Query 004733
Match_columns 733
No_of_seqs 595 out of 3943
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 04:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-38 7.1E-43 345.4 39.2 493 133-702 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-37 5.2E-42 338.6 41.9 478 187-722 82-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-25 8.8E-30 227.6 41.1 370 231-706 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 3.6E-24 1.2E-28 219.1 40.8 351 330-721 6-369 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.7E-26 5.7E-31 239.1 22.2 182 454-637 28-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 2E-25 6.8E-30 231.0 20.6 179 423-602 28-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.6E-22 5.4E-27 215.7 35.3 252 465-722 202-480 (514)
8 3fp2_A TPR repeat-containing p 99.9 2.3E-21 7.7E-26 208.0 37.5 420 224-720 26-491 (537)
9 2gw1_A Mitochondrial precursor 99.9 4.3E-21 1.5E-25 204.6 39.3 450 156-699 8-491 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4E-25 197.4 34.4 342 322-726 25-416 (450)
11 1xi4_A Clathrin heavy chain; a 99.9 4.9E-17 1.7E-21 177.7 59.2 636 22-715 608-1340(1630)
12 2y4t_A DNAJ homolog subfamily 99.9 8.1E-20 2.8E-24 191.0 32.9 296 420-722 25-360 (450)
13 3fp2_A TPR repeat-containing p 99.9 7.6E-19 2.6E-23 188.3 40.6 437 155-697 26-502 (537)
14 1xi4_A Clathrin heavy chain; a 99.9 5.6E-16 1.9E-20 169.4 59.8 611 60-720 546-1309(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 8.6E-18 3E-22 169.7 34.7 296 421-722 3-337 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 4.5E-17 1.6E-21 164.4 33.8 309 355-705 4-354 (359)
17 3hym_B Cell division cycle pro 99.8 2.2E-17 7.6E-22 164.5 30.3 287 418-708 19-322 (330)
18 3hym_B Cell division cycle pro 99.8 6.1E-17 2.1E-21 161.3 28.7 267 449-721 19-300 (330)
19 1fch_A Peroxisomal targeting s 99.8 3.4E-17 1.2E-21 166.0 23.8 283 430-716 34-355 (368)
20 3mkr_A Coatomer subunit epsilo 99.8 1.4E-16 4.9E-21 153.9 26.4 269 431-714 9-288 (291)
21 2ooe_A Cleavage stimulation fa 99.8 3.3E-15 1.1E-19 158.9 38.8 211 505-722 256-494 (530)
22 2xm6_A Protein corresponding t 99.8 9.8E-15 3.4E-19 153.6 41.3 350 322-722 38-434 (490)
23 2xm6_A Protein corresponding t 99.8 7.9E-15 2.7E-19 154.3 40.4 193 500-703 236-452 (490)
24 4g1t_A Interferon-induced prot 99.7 6.9E-16 2.3E-20 162.2 29.2 366 323-732 51-471 (472)
25 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4.1E-21 156.8 21.0 376 200-682 15-413 (449)
26 4eqf_A PEX5-related protein; a 99.7 1.7E-16 5.9E-21 160.4 21.8 262 451-716 64-352 (365)
27 2ooe_A Cleavage stimulation fa 99.7 1.3E-14 4.3E-19 154.4 36.6 215 470-690 256-496 (530)
28 3cv0_A Peroxisome targeting si 99.7 4E-16 1.4E-20 155.1 22.9 256 457-718 26-313 (327)
29 3mkr_A Coatomer subunit epsilo 99.7 7E-16 2.4E-20 149.0 21.4 248 459-722 6-266 (291)
30 1fch_A Peroxisomal targeting s 99.7 8.1E-16 2.8E-20 155.8 22.1 278 434-722 14-316 (368)
31 1b89_A Protein (clathrin heavy 99.7 1.3E-15 4.3E-20 149.6 21.9 284 335-650 15-307 (449)
32 4eqf_A PEX5-related protein; a 99.7 1.3E-15 4.4E-20 154.0 21.8 233 486-722 64-312 (365)
33 2pl2_A Hypothetical conserved 99.7 5.7E-15 2E-19 136.2 19.7 194 519-717 2-211 (217)
34 3uq3_A Heat shock protein STI1 99.6 1.7E-14 5.6E-19 137.8 21.1 214 493-721 11-237 (258)
35 3cv0_A Peroxisome targeting si 99.6 9E-15 3.1E-19 145.3 19.6 264 421-690 21-319 (327)
36 4g1t_A Interferon-induced prot 99.6 3.2E-13 1.1E-17 141.7 32.0 382 255-698 50-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 3.1E-14 1.1E-18 135.9 19.5 233 454-700 7-256 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 1.4E-15 4.9E-20 161.2 9.0 144 123-270 127-286 (1134)
39 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-15 6E-20 160.5 8.8 121 521-643 126-254 (1134)
40 3u4t_A TPR repeat-containing p 99.6 3.1E-13 1.1E-17 130.0 22.8 240 460-705 11-269 (272)
41 2ho1_A Type 4 fimbrial biogene 99.6 3.1E-13 1.1E-17 128.4 22.4 198 522-722 37-240 (252)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.7E-13 9.1E-18 130.8 22.0 239 466-714 19-269 (275)
43 2q7f_A YRRB protein; TPR, prot 99.6 1E-13 3.5E-18 130.9 18.4 198 521-722 22-224 (243)
44 2vq2_A PILW, putative fimbrial 99.6 6.7E-13 2.3E-17 123.5 23.0 199 521-722 7-213 (225)
45 3vtx_A MAMA; tetratricopeptide 99.5 5.1E-13 1.7E-17 119.8 20.4 167 552-722 4-172 (184)
46 1ouv_A Conserved hypothetical 99.5 3.4E-12 1.2E-16 122.7 26.4 224 451-722 5-253 (273)
47 3u4t_A TPR repeat-containing p 99.5 6.3E-13 2.2E-17 127.9 20.2 229 489-723 5-253 (272)
48 3e4b_A ALGK; tetratricopeptide 99.5 8.1E-12 2.8E-16 129.0 29.1 248 425-720 145-421 (452)
49 2q7f_A YRRB protein; TPR, prot 99.5 5.6E-13 1.9E-17 125.8 18.6 213 453-705 24-241 (243)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.3E-13 3.2E-17 126.9 20.0 221 497-722 15-246 (275)
51 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-12 1.1E-16 131.9 23.5 343 360-722 9-389 (452)
52 2ho1_A Type 4 fimbrial biogene 99.5 7E-12 2.4E-16 118.9 23.6 207 452-697 37-249 (252)
53 2h6f_A Protein farnesyltransfe 99.5 3.2E-12 1.1E-16 127.5 22.0 228 453-722 98-350 (382)
54 2h6f_A Protein farnesyltransfe 99.5 6.1E-12 2.1E-16 125.5 23.9 244 420-704 96-366 (382)
55 1ouv_A Conserved hypothetical 99.5 1.9E-11 6.5E-16 117.5 25.9 227 420-692 5-257 (273)
56 4abn_A Tetratricopeptide repea 99.5 9.4E-13 3.2E-17 136.9 17.1 191 521-716 101-317 (474)
57 2vq2_A PILW, putative fimbrial 99.5 1.6E-11 5.4E-16 114.1 23.3 208 452-698 8-223 (225)
58 2pl2_A Hypothetical conserved 99.5 4.6E-12 1.6E-16 116.6 19.3 166 551-722 3-182 (217)
59 3sf4_A G-protein-signaling mod 99.4 1.6E-12 5.6E-17 133.3 17.9 271 420-690 8-340 (406)
60 4a1s_A PINS, partner of inscut 99.4 7.4E-13 2.5E-17 136.1 14.9 260 458-720 54-372 (411)
61 4e6h_A MRNA 3'-END-processing 99.4 3.8E-09 1.3E-13 112.6 42.4 217 471-693 328-577 (679)
62 3ro2_A PINS homolog, G-protein 99.4 1.9E-12 6.4E-17 129.0 15.2 258 461-721 14-333 (338)
63 3as5_A MAMA; tetratricopeptide 99.4 7.4E-12 2.5E-16 112.3 17.6 167 555-725 10-178 (186)
64 3sf4_A G-protein-signaling mod 99.4 3E-12 1E-16 131.4 14.8 267 452-719 9-335 (406)
65 3vtx_A MAMA; tetratricopeptide 99.4 2.2E-11 7.4E-16 109.0 18.7 168 521-692 4-176 (184)
66 4gyw_A UDP-N-acetylglucosamine 99.4 1.5E-11 5.1E-16 132.8 19.4 161 553-719 9-173 (723)
67 3ulq_A Response regulator aspa 99.4 1.3E-11 4.4E-16 125.3 17.3 226 493-719 109-367 (383)
68 2ond_A Cleavage stimulation fa 99.3 2.4E-10 8.2E-15 111.7 23.6 185 504-692 81-276 (308)
69 3nf1_A KLC 1, kinesin light ch 99.3 4.3E-12 1.5E-16 124.7 10.9 240 452-720 27-307 (311)
70 2ond_A Cleavage stimulation fa 99.3 1.9E-10 6.4E-15 112.5 22.4 213 505-723 34-273 (308)
71 4abn_A Tetratricopeptide repea 99.3 3.4E-11 1.2E-15 125.2 17.8 181 537-722 83-289 (474)
72 4i17_A Hypothetical protein; T 99.3 5.8E-11 2E-15 110.5 17.7 188 522-722 7-211 (228)
73 4a1s_A PINS, partner of inscut 99.3 2.5E-11 8.7E-16 124.6 16.0 265 425-689 52-375 (411)
74 4e6h_A MRNA 3'-END-processing 99.3 1.7E-08 5.7E-13 107.7 36.9 217 505-723 327-573 (679)
75 4i17_A Hypothetical protein; T 99.3 2.5E-10 8.6E-15 106.1 19.5 204 485-701 5-224 (228)
76 3ro2_A PINS homolog, G-protein 99.3 5.9E-11 2E-15 118.0 16.1 265 425-689 9-335 (338)
77 1hz4_A MALT regulatory protein 99.3 2.3E-09 8E-14 108.2 27.6 191 527-718 98-320 (373)
78 3q15_A PSP28, response regulat 99.3 1.7E-10 5.8E-15 116.7 19.0 301 418-719 7-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.3 4.2E-10 1.4E-14 100.6 19.4 167 523-693 9-180 (186)
80 3ulq_A Response regulator aspa 99.2 3.2E-10 1.1E-14 115.0 18.9 228 460-688 111-370 (383)
81 3nf1_A KLC 1, kinesin light ch 99.2 2.9E-11 9.8E-16 118.8 10.3 241 420-689 26-310 (311)
82 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.5E-09 5.2E-14 100.4 18.6 181 524-725 6-218 (225)
83 3mv2_B Coatomer subunit epsilo 99.1 4E-09 1.4E-13 99.2 20.7 246 428-696 20-292 (310)
84 3q15_A PSP28, response regulat 99.1 4.3E-09 1.5E-13 106.3 22.3 228 427-686 107-365 (378)
85 3qky_A Outer membrane assembly 99.1 1.5E-09 5E-14 103.3 17.8 183 522-722 15-226 (261)
86 3edt_B KLC 2, kinesin light ch 99.1 3E-10 1E-14 109.7 13.2 199 522-720 43-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.1 5.3E-09 1.8E-13 98.4 20.5 241 459-722 20-284 (310)
88 2fo7_A Synthetic consensus TPR 99.1 2.4E-09 8.2E-14 89.8 15.7 128 592-721 4-133 (136)
89 4ga2_A E3 SUMO-protein ligase 99.1 1.9E-10 6.5E-15 98.4 8.4 141 560-706 4-149 (150)
90 3qou_A Protein YBBN; thioredox 99.1 3.3E-09 1.1E-13 102.1 17.9 176 539-719 103-283 (287)
91 1qqe_A Vesicular transport pro 99.1 1.3E-09 4.5E-14 105.3 14.8 202 502-718 32-267 (292)
92 4gyw_A UDP-N-acetylglucosamine 99.1 2E-09 6.8E-14 116.3 16.6 163 521-689 8-177 (723)
93 3qky_A Outer membrane assembly 99.0 5.1E-09 1.7E-13 99.5 17.1 205 485-711 13-252 (261)
94 1qqe_A Vesicular transport pro 99.0 4.2E-09 1.4E-13 101.8 16.5 174 524-700 79-283 (292)
95 2pzi_A Probable serine/threoni 99.0 1.2E-09 4E-14 119.0 13.8 168 533-706 402-583 (681)
96 2r5s_A Uncharacterized protein 99.0 2.7E-09 9.4E-14 94.2 13.6 159 556-719 9-172 (176)
97 1hz4_A MALT regulatory protein 99.0 1E-07 3.4E-12 96.1 25.5 194 525-720 56-282 (373)
98 3rjv_A Putative SEL1 repeat pr 99.0 3.7E-08 1.3E-12 89.8 20.0 172 541-722 5-199 (212)
99 2vsy_A XCC0866; transferase, g 99.0 4.3E-09 1.5E-13 112.7 16.0 160 535-698 2-169 (568)
100 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.8E-13 84.5 16.2 131 555-689 3-135 (136)
101 4ga2_A E3 SUMO-protein ligase 98.9 1.4E-09 4.7E-14 93.0 7.5 125 595-722 3-131 (150)
102 3gyz_A Chaperone protein IPGC; 98.9 7.7E-09 2.6E-13 87.7 11.2 101 621-721 31-134 (151)
103 3urz_A Uncharacterized protein 98.9 2.8E-08 9.5E-13 90.4 15.6 159 526-690 8-190 (208)
104 2pzi_A Probable serine/threoni 98.9 7.3E-09 2.5E-13 112.7 13.7 152 564-721 402-564 (681)
105 3edt_B KLC 2, kinesin light ch 98.9 2E-08 6.7E-13 96.7 14.6 166 522-687 85-282 (283)
106 3u3w_A Transcriptional activat 98.9 1.7E-07 5.9E-12 90.5 21.1 161 559-719 81-265 (293)
107 4gco_A Protein STI-1; structur 98.9 1.5E-08 5E-13 83.4 11.3 107 591-699 15-123 (126)
108 3urz_A Uncharacterized protein 98.9 9.3E-08 3.2E-12 86.9 17.0 159 557-722 8-188 (208)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 7.2E-08 2.5E-12 93.9 16.9 220 465-713 4-254 (307)
110 4gco_A Protein STI-1; structur 98.8 3.7E-08 1.3E-12 80.9 12.6 102 621-722 8-112 (126)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.4E-08 2.9E-12 87.8 16.4 129 555-690 8-154 (213)
112 2vsy_A XCC0866; transferase, g 98.8 5.8E-08 2E-12 103.9 17.0 153 566-723 2-160 (568)
113 3qou_A Protein YBBN; thioredox 98.8 4.7E-08 1.6E-12 94.0 14.0 134 587-723 115-251 (287)
114 2qfc_A PLCR protein; TPR, HTH, 98.8 2.5E-07 8.7E-12 89.3 19.3 163 555-719 77-265 (293)
115 2vgx_A Chaperone SYCD; alterna 98.8 1.3E-08 4.4E-13 86.5 8.7 94 627-720 23-118 (148)
116 3dra_A Protein farnesyltransfe 98.8 1.9E-06 6.3E-11 82.2 24.5 179 537-719 84-286 (306)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 3E-08 1E-12 96.5 12.6 197 500-718 4-222 (307)
118 1a17_A Serine/threonine protei 98.8 1.3E-07 4.3E-12 82.5 15.0 127 591-719 15-145 (166)
119 2e2e_A Formate-dependent nitri 98.8 4.2E-08 1.4E-12 86.7 10.8 124 565-692 22-150 (177)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.7E-07 1.3E-11 84.2 17.6 184 487-692 4-219 (225)
121 2c2l_A CHIP, carboxy terminus 98.7 3.9E-08 1.3E-12 94.1 10.9 191 522-720 4-199 (281)
122 2r5s_A Uncharacterized protein 98.7 8.2E-08 2.8E-12 84.6 11.7 130 592-724 9-141 (176)
123 2vyi_A SGTA protein; chaperone 98.7 2E-07 7E-12 77.2 13.2 116 590-707 13-130 (131)
124 1na0_A Designed protein CTPR3; 98.7 3.2E-07 1.1E-11 75.2 14.3 114 590-705 10-125 (125)
125 2lni_A Stress-induced-phosphop 98.7 1.8E-07 6E-12 77.9 12.8 115 590-706 17-133 (133)
126 4f3v_A ESX-1 secretion system 98.7 1.6E-07 5.4E-12 87.2 13.2 184 534-723 18-240 (282)
127 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-07 5.5E-12 92.5 14.1 125 591-718 149-292 (336)
128 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.7E-12 79.7 11.6 89 631-719 24-114 (142)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.3E-07 2.8E-11 81.0 17.5 128 526-657 10-154 (213)
130 2uy1_A Cleavage stimulation fa 98.7 4.4E-05 1.5E-09 79.0 32.2 125 554-685 287-412 (493)
131 1hxi_A PEX5, peroxisome target 98.7 1.2E-07 4E-12 77.3 10.0 96 627-722 19-116 (121)
132 3upv_A Heat shock protein STI1 98.7 1.9E-07 6.5E-12 76.9 11.2 94 627-720 6-101 (126)
133 3rjv_A Putative SEL1 repeat pr 98.6 1.8E-06 6.1E-11 78.6 18.6 173 506-689 5-200 (212)
134 2kck_A TPR repeat; tetratricop 98.6 2.2E-07 7.4E-12 74.5 11.1 100 625-724 6-110 (112)
135 2vgx_A Chaperone SYCD; alterna 98.6 8.4E-08 2.9E-12 81.5 8.9 119 575-698 9-130 (148)
136 2fbn_A 70 kDa peptidylprolyl i 98.6 3.4E-08 1.1E-12 89.2 6.5 97 626-722 89-188 (198)
137 3gyz_A Chaperone protein IPGC; 98.6 3.4E-07 1.2E-11 77.5 12.2 104 585-691 31-138 (151)
138 3q49_B STIP1 homology and U bo 98.6 5.7E-07 2E-11 75.3 12.5 96 625-720 9-106 (137)
139 3sz7_A HSC70 cochaperone (SGT) 98.6 3E-07 1E-11 79.9 10.7 111 588-700 10-122 (164)
140 2e2e_A Formate-dependent nitri 98.6 6E-07 2E-11 79.2 12.7 124 599-724 20-148 (177)
141 3u3w_A Transcriptional activat 98.6 5.9E-06 2E-10 79.6 20.7 159 528-686 81-266 (293)
142 1elw_A TPR1-domain of HOP; HOP 98.6 7E-07 2.4E-11 72.2 12.1 92 629-720 8-101 (118)
143 2xcb_A PCRH, regulatory protei 98.6 2.7E-07 9.1E-12 77.9 9.6 108 591-700 20-129 (142)
144 3dra_A Protein farnesyltransfe 98.6 3.9E-05 1.3E-09 73.0 25.5 160 536-699 124-301 (306)
145 3gw4_A Uncharacterized protein 98.5 9.2E-07 3.1E-11 80.0 13.5 129 591-719 28-175 (203)
146 1elw_A TPR1-domain of HOP; HOP 98.5 2.1E-06 7.3E-11 69.3 13.6 110 590-701 5-116 (118)
147 4gcn_A Protein STI-1; structur 98.5 4E-07 1.4E-11 74.9 9.0 92 628-719 11-111 (127)
148 2lni_A Stress-induced-phosphop 98.5 7.6E-07 2.6E-11 74.0 10.7 98 625-722 16-115 (133)
149 3upv_A Heat shock protein STI1 98.5 1.4E-06 4.7E-11 71.6 12.1 110 591-702 6-123 (126)
150 1na0_A Designed protein CTPR3; 98.5 1.4E-06 4.7E-11 71.3 12.1 98 625-722 9-108 (125)
151 3sz7_A HSC70 cochaperone (SGT) 98.5 4E-06 1.4E-10 72.7 15.1 93 555-651 13-105 (164)
152 2xev_A YBGF; tetratricopeptide 98.5 8.8E-07 3E-11 73.2 10.3 60 660-719 42-104 (129)
153 2uy1_A Cleavage stimulation fa 98.5 0.00021 7E-09 74.0 29.9 334 106-480 28-412 (493)
154 2dba_A Smooth muscle cell asso 98.4 1.9E-06 6.5E-11 73.1 12.3 109 589-700 28-142 (148)
155 2qfc_A PLCR protein; TPR, HTH, 98.4 1E-05 3.5E-10 78.0 18.8 163 524-686 77-266 (293)
156 2dba_A Smooth muscle cell asso 98.4 4E-06 1.4E-10 71.1 13.9 98 624-721 27-129 (148)
157 4f3v_A ESX-1 secretion system 98.4 3.5E-06 1.2E-10 78.2 14.2 137 557-699 106-249 (282)
158 2vyi_A SGTA protein; chaperone 98.4 2.4E-06 8.2E-11 70.5 12.0 98 625-722 12-111 (131)
159 1a17_A Serine/threonine protei 98.4 6.6E-06 2.3E-10 71.3 15.1 127 555-685 15-145 (166)
160 3q49_B STIP1 homology and U bo 98.4 3.1E-06 1.1E-10 70.6 12.0 113 588-702 8-127 (137)
161 2hr2_A Hypothetical protein; a 98.4 1.8E-06 6.3E-11 71.9 9.7 62 659-720 59-131 (159)
162 3gw4_A Uncharacterized protein 98.4 4.2E-06 1.5E-10 75.5 13.2 154 534-687 4-177 (203)
163 3q7a_A Farnesyltransferase alp 98.4 7E-05 2.4E-09 72.1 21.8 178 538-719 105-330 (349)
164 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.1E-06 1.1E-10 87.1 13.1 94 625-718 317-413 (457)
165 3k9i_A BH0479 protein; putativ 98.3 6.1E-07 2.1E-11 72.6 6.0 83 638-720 3-90 (117)
166 2if4_A ATFKBP42; FKBP-like, al 98.3 1.6E-06 5.6E-11 85.2 10.1 152 553-725 179-333 (338)
167 1elr_A TPR2A-domain of HOP; HO 98.3 2.6E-06 9E-11 70.3 9.8 109 590-701 5-122 (131)
168 2fbn_A 70 kDa peptidylprolyl i 98.3 6.7E-07 2.3E-11 80.6 6.0 65 658-722 89-153 (198)
169 1wao_1 Serine/threonine protei 98.3 1.9E-06 6.3E-11 89.2 10.0 116 597-715 14-134 (477)
170 3rkv_A Putative peptidylprolyl 98.3 2.9E-06 1E-10 73.3 9.5 102 590-691 12-131 (162)
171 2xev_A YBGF; tetratricopeptide 98.3 1.7E-05 5.9E-10 65.2 13.8 103 595-700 8-119 (129)
172 2c2l_A CHIP, carboxy terminus 98.3 6.7E-06 2.3E-10 78.5 12.6 110 588-700 3-115 (281)
173 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4.2E-10 82.7 15.3 190 530-719 12-244 (434)
174 3ro3_A PINS homolog, G-protein 98.2 4.1E-06 1.4E-10 72.2 9.8 129 592-720 12-158 (164)
175 1hxi_A PEX5, peroxisome target 98.2 7.2E-06 2.5E-10 66.5 10.2 95 594-691 22-119 (121)
176 3dss_A Geranylgeranyl transfer 98.2 8.3E-05 2.8E-09 71.2 19.0 189 534-730 41-273 (331)
177 1elr_A TPR2A-domain of HOP; HO 98.2 7E-06 2.4E-10 67.7 10.4 92 628-719 7-107 (131)
178 1ihg_A Cyclophilin 40; ppiase 98.2 6.1E-06 2.1E-10 82.0 11.3 89 625-713 273-363 (370)
179 1p5q_A FKBP52, FK506-binding p 98.2 1.5E-05 5E-10 78.4 13.8 127 554-685 148-293 (336)
180 2kck_A TPR repeat; tetratricop 98.2 9E-06 3.1E-10 64.8 10.1 98 592-691 9-111 (112)
181 3dss_A Geranylgeranyl transfer 98.2 0.0004 1.4E-08 66.5 22.9 181 538-722 90-306 (331)
182 4gcn_A Protein STI-1; structur 98.2 1.5E-05 5.1E-10 65.3 11.1 61 555-618 10-71 (127)
183 3k9i_A BH0479 protein; putativ 98.1 2E-06 6.9E-11 69.5 5.2 95 602-697 3-101 (117)
184 3n71_A Histone lysine methyltr 98.1 1.3E-05 4.5E-10 82.1 11.7 124 600-723 320-467 (490)
185 3q7a_A Farnesyltransferase alp 98.1 0.0018 6.3E-08 62.3 25.8 229 432-700 65-346 (349)
186 2l6j_A TPR repeat-containing p 98.1 1.4E-06 4.7E-11 69.7 3.3 91 625-715 4-102 (111)
187 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.3E-10 61.9 9.2 66 655-720 5-70 (100)
188 3rkv_A Putative peptidylprolyl 98.1 1.4E-05 4.6E-10 69.1 9.8 62 659-720 65-126 (162)
189 3bee_A Putative YFRE protein; 98.1 2.5E-05 8.5E-10 59.2 9.6 73 654-727 3-78 (93)
190 1dce_A Protein (RAB geranylger 98.1 0.00014 4.9E-09 76.5 18.7 171 535-709 42-244 (567)
191 4b4t_Q 26S proteasome regulato 98.1 3.8E-05 1.3E-09 78.9 14.2 160 560-719 11-203 (434)
192 2kat_A Uncharacterized protein 98.0 1.6E-05 5.5E-10 63.8 8.5 63 657-719 19-81 (115)
193 1zu2_A Mitochondrial import re 98.0 5.8E-06 2E-10 68.7 5.5 50 673-722 62-122 (158)
194 2hr2_A Hypothetical protein; a 98.0 1.5E-05 5.1E-10 66.4 7.8 73 627-699 59-144 (159)
195 3ro3_A PINS homolog, G-protein 98.0 2.5E-05 8.5E-10 67.2 9.6 134 555-688 11-160 (164)
196 2if4_A ATFKBP42; FKBP-like, al 98.0 2E-05 6.8E-10 77.4 9.9 153 522-692 179-334 (338)
197 1wao_1 Serine/threonine protei 98.0 3.1E-05 1.1E-09 80.0 11.1 113 532-649 16-134 (477)
198 1na3_A Designed protein CTPR2; 98.0 4.9E-05 1.7E-09 57.7 9.6 80 626-705 10-91 (91)
199 1klx_A Cysteine rich protein B 97.9 6E-05 2E-09 62.6 10.1 111 604-722 10-128 (138)
200 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.1E-05 1.4E-09 78.7 10.6 134 568-723 249-383 (457)
201 1ihg_A Cyclophilin 40; ppiase 97.8 5.6E-05 1.9E-09 75.0 9.9 114 590-722 224-338 (370)
202 1dce_A Protein (RAB geranylger 97.8 0.00047 1.6E-08 72.5 16.9 153 566-723 42-224 (567)
203 2l6j_A TPR repeat-containing p 97.8 8.7E-05 3E-09 58.8 8.9 68 656-723 3-70 (111)
204 1na3_A Designed protein CTPR2; 97.7 0.00015 5.1E-09 54.9 8.2 66 657-722 9-74 (91)
205 1klx_A Cysteine rich protein B 97.5 0.0011 3.7E-08 54.9 12.1 112 567-688 9-128 (138)
206 1zu2_A Mitochondrial import re 97.5 0.00018 6.1E-09 59.8 6.8 124 564-720 13-147 (158)
207 2kc7_A BFR218_protein; tetratr 97.5 0.00019 6.6E-09 55.4 6.7 78 631-716 6-86 (99)
208 2kat_A Uncharacterized protein 97.5 0.00051 1.8E-08 54.8 9.4 65 625-689 19-85 (115)
209 2kc7_A BFR218_protein; tetratr 97.5 0.0002 6.7E-09 55.4 6.4 61 663-723 6-67 (99)
210 3n71_A Histone lysine methyltr 97.4 0.00048 1.6E-08 70.6 10.4 86 634-719 318-421 (490)
211 3qww_A SET and MYND domain-con 97.4 0.00049 1.7E-08 69.2 9.6 61 659-719 342-410 (433)
212 3lvg_A Clathrin heavy chain 1; 97.4 3.5E-05 1.2E-09 75.0 1.2 419 20-508 53-533 (624)
213 1qsa_A Protein (soluble lytic 97.3 0.2 6.7E-06 52.6 28.3 238 425-685 76-347 (618)
214 3lvg_A Clathrin heavy chain 1; 97.3 7.6E-06 2.6E-10 79.5 -5.1 430 122-685 53-524 (624)
215 3qwp_A SET and MYND domain-con 97.2 0.0016 5.5E-08 65.6 11.1 85 635-719 297-399 (429)
216 3ly7_A Transcriptional activat 97.2 0.0084 2.9E-07 57.6 15.1 143 551-722 192-341 (372)
217 3ma5_A Tetratricopeptide repea 97.2 0.0011 3.9E-08 51.1 7.7 65 552-618 6-70 (100)
218 1pc2_A Mitochondria fission pr 97.1 0.0012 4E-08 54.2 7.1 93 603-697 12-111 (152)
219 3ly7_A Transcriptional activat 97.1 0.0052 1.8E-07 59.0 12.5 111 586-721 191-307 (372)
220 3u64_A Protein TP_0956; tetrat 97.0 0.0028 9.5E-08 58.1 9.0 87 642-728 180-277 (301)
221 3qww_A SET and MYND domain-con 97.0 0.0043 1.5E-07 62.4 11.2 37 659-695 384-425 (433)
222 1wy6_A Hypothetical protein ST 96.9 0.11 3.6E-06 40.9 15.7 141 563-723 17-157 (172)
223 3qwp_A SET and MYND domain-con 96.9 0.0077 2.6E-07 60.6 12.2 70 627-696 331-415 (429)
224 1pc2_A Mitochondria fission pr 96.6 0.012 4.2E-07 48.2 9.2 82 641-722 14-102 (152)
225 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0094 3.2E-07 46.1 8.2 75 624-698 4-87 (104)
226 3mkq_A Coatomer beta'-subunit; 96.5 0.073 2.5E-06 59.4 18.3 139 531-710 661-802 (814)
227 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.3E-06 57.5 19.4 152 333-547 609-761 (814)
228 2v5f_A Prolyl 4-hydroxylase su 96.3 0.021 7.3E-07 44.1 9.0 59 661-719 9-74 (104)
229 4gns_B Protein CSD3, chitin bi 96.2 0.022 7.5E-07 60.8 10.9 54 664-717 344-397 (754)
230 4h7y_A Dual specificity protei 96.2 0.03 1E-06 45.1 8.9 106 588-695 12-132 (161)
231 3bee_A Putative YFRE protein; 95.9 0.066 2.2E-06 40.1 9.5 69 623-691 4-77 (93)
232 1nzn_A CGI-135 protein, fissio 95.8 0.031 1.1E-06 43.9 7.5 99 597-697 9-114 (126)
233 1nzn_A CGI-135 protein, fissio 95.8 0.12 4.2E-06 40.6 10.7 82 640-721 16-104 (126)
234 1y8m_A FIS1; mitochondria, unk 95.2 0.2 6.7E-06 40.1 10.0 72 622-693 36-113 (144)
235 3mkq_B Coatomer subunit alpha; 95.1 0.92 3.2E-05 38.2 14.4 104 530-652 13-116 (177)
236 3u64_A Protein TP_0956; tetrat 95.0 0.062 2.1E-06 49.4 7.7 75 570-650 180-265 (301)
237 3o48_A Mitochondria fission 1 94.9 0.087 3E-06 41.6 7.2 71 623-693 38-114 (134)
238 4h7y_A Dual specificity protei 94.6 0.32 1.1E-05 39.2 9.8 51 671-721 74-124 (161)
239 3mkq_B Coatomer subunit alpha; 94.5 1.2 4.2E-05 37.5 13.7 128 131-282 13-141 (177)
240 3ffl_A Anaphase-promoting comp 93.8 0.2 6.9E-06 41.4 7.5 28 690-717 121-148 (167)
241 1qsa_A Protein (soluble lytic 93.3 9.3 0.00032 40.1 34.5 324 323-683 72-439 (618)
242 2ff4_A Probable regulatory pro 92.3 0.33 1.1E-05 48.0 8.1 68 660-727 174-246 (388)
243 3lpz_A GET4 (YOR164C homolog); 92.0 8.3 0.00028 36.4 19.9 109 225-346 37-159 (336)
244 1wy6_A Hypothetical protein ST 91.9 3.8 0.00013 32.4 13.5 139 463-621 18-156 (172)
245 1wdy_A 2-5A-dependent ribonucl 91.7 3.9 0.00013 38.0 14.8 210 25-247 6-240 (285)
246 4b4t_P 26S proteasome regulato 91.6 2.6 8.7E-05 42.5 13.8 91 629-719 141-246 (445)
247 4b4t_P 26S proteasome regulato 91.1 14 0.00046 37.2 21.8 162 260-448 141-322 (445)
248 1zbp_A Hypothetical protein VP 91.0 2.6 8.8E-05 38.2 11.4 54 563-618 7-60 (273)
249 1y8m_A FIS1; mitochondria, unk 90.9 3.6 0.00012 33.0 10.9 70 653-722 35-108 (144)
250 3o48_A Mitochondria fission 1 90.6 3 0.0001 33.0 10.1 70 653-722 36-109 (134)
251 2qx5_A Nucleoporin NIC96; mRNA 90.1 16 0.00055 38.5 18.2 81 360-448 300-383 (661)
252 4ady_A RPN2, 26S proteasome re 90.0 26 0.00088 38.6 43.4 165 498-667 501-671 (963)
253 4fhn_B Nucleoporin NUP120; pro 90.0 7 0.00024 45.0 17.1 140 492-641 817-987 (1139)
254 3ffl_A Anaphase-promoting comp 89.9 1.5 5.2E-05 36.2 8.3 28 625-652 122-149 (167)
255 1zbp_A Hypothetical protein VP 89.6 0.93 3.2E-05 41.0 7.4 113 597-721 5-130 (273)
256 3lpz_A GET4 (YOR164C homolog); 89.4 15 0.0005 34.8 21.8 125 330-465 42-180 (336)
257 2wpv_A GET4, UPF0363 protein Y 89.2 15 0.0005 34.5 19.0 109 226-347 36-158 (312)
258 2wpv_A GET4, UPF0363 protein Y 87.9 18 0.0006 34.0 19.1 124 330-464 40-177 (312)
259 4gns_B Protein CSD3, chitin bi 87.8 1.8 6.3E-05 46.3 9.5 122 159-282 253-397 (754)
260 2ff4_A Probable regulatory pro 87.8 3.1 0.00011 41.0 10.7 77 557-635 175-255 (388)
261 4ady_A RPN2, 26S proteasome re 87.7 37 0.0013 37.4 43.8 249 431-685 384-657 (963)
262 3txn_A 26S proteasome regulato 86.1 27 0.00091 34.1 17.1 56 595-650 105-164 (394)
263 1v54_E Cytochrome C oxidase po 86.1 4.4 0.00015 30.0 7.6 62 569-633 26-87 (109)
264 1v54_E Cytochrome C oxidase po 85.2 4.7 0.00016 29.9 7.4 49 650-698 38-86 (109)
265 2qx5_A Nucleoporin NIC96; mRNA 84.8 41 0.0014 35.4 17.6 39 329-367 158-199 (661)
266 3ltm_A Alpha-REP4; protein eng 84.6 20 0.00067 31.3 18.0 153 55-216 31-184 (211)
267 3ltj_A Alpharep-4; protein eng 84.0 20 0.00068 30.9 17.3 50 120-169 56-105 (201)
268 4fhn_B Nucleoporin NUP120; pro 82.1 11 0.00037 43.4 13.2 145 128-274 817-989 (1139)
269 3ltm_A Alpha-REP4; protein eng 81.9 25 0.00086 30.6 17.0 82 90-171 31-112 (211)
270 3ltj_A Alpharep-4; protein eng 81.2 26 0.00088 30.2 16.5 139 91-237 58-197 (201)
271 1wdy_A 2-5A-dependent ribonucl 80.6 34 0.0012 31.3 15.8 57 233-290 155-213 (285)
272 3esl_A Checkpoint serine/threo 80.3 19 0.00067 30.9 10.7 28 659-686 117-144 (202)
273 2uwj_G Type III export protein 79.5 16 0.00056 26.9 9.1 61 529-593 46-106 (115)
274 2p58_C Putative type III secre 78.8 17 0.00059 26.8 9.8 61 529-593 47-107 (116)
275 2y69_E Cytochrome C oxidase su 78.2 13 0.00043 29.3 8.0 60 571-633 71-130 (152)
276 4b4t_R RPN7, 26S proteasome re 77.4 13 0.00044 37.2 10.5 59 591-650 133-193 (429)
277 2uwj_G Type III export protein 76.3 21 0.00071 26.4 9.7 85 402-491 22-106 (115)
278 2p58_C Putative type III secre 75.5 22 0.00075 26.3 10.3 85 402-491 23-107 (116)
279 2y69_E Cytochrome C oxidase su 74.7 28 0.00094 27.5 9.0 52 648-699 79-130 (152)
280 4a1g_A Mitotic checkpoint seri 71.4 35 0.0012 27.8 9.5 49 676-724 84-134 (152)
281 3txn_A 26S proteasome regulato 70.9 81 0.0028 30.8 19.8 27 422-448 20-46 (394)
282 4b4t_R RPN7, 26S proteasome re 68.9 29 0.001 34.5 10.7 95 524-618 133-237 (429)
283 3b7b_A Euchromatic histone-lys 68.7 38 0.0013 29.9 10.8 22 263-284 214-235 (237)
284 2wvi_A Mitotic checkpoint seri 67.6 45 0.0015 27.6 9.6 29 659-687 98-126 (164)
285 1n11_A Ankyrin; clathrin, BAND 65.6 1.1E+02 0.0037 30.2 15.9 203 28-248 18-234 (437)
286 3esl_A Checkpoint serine/threo 64.7 63 0.0022 27.7 10.2 67 555-624 82-149 (202)
287 3ljn_A Hypothetical protein; a 64.3 25 0.00086 33.9 9.2 17 232-248 179-195 (364)
288 1oyz_A Hypothetical protein YI 64.0 87 0.003 28.6 19.4 56 324-382 207-262 (280)
289 2rfa_A Transient receptor pote 63.9 60 0.0021 28.5 11.1 86 28-122 7-102 (232)
290 3jxi_A Vanilloid receptor-rela 62.9 32 0.0011 31.1 9.2 119 28-147 9-161 (260)
291 4b4t_S RPN3, 26S proteasome re 62.9 94 0.0032 31.4 12.6 32 16-47 226-257 (523)
292 3kea_A K1L; tropism, ANK repea 61.6 89 0.003 28.7 12.1 40 82-121 49-88 (285)
293 1k1a_A B-cell lymphoma 3-encod 56.7 1E+02 0.0035 27.0 13.1 81 69-149 18-102 (241)
294 3eu9_A Huntingtin-interacting 53.9 48 0.0016 29.2 8.7 21 98-118 79-99 (240)
295 2b7e_A PRE-mRNA processing pro 51.8 21 0.00073 23.3 3.9 36 37-73 2-38 (59)
296 3jxi_A Vanilloid receptor-rela 49.8 38 0.0013 30.6 7.2 88 61-150 7-117 (260)
297 4a1g_A Mitotic checkpoint seri 48.7 1.1E+02 0.0037 24.9 9.4 53 570-624 82-135 (152)
298 2pnn_A Transient receptor pote 48.5 1.1E+02 0.0036 27.8 10.2 119 28-147 17-169 (273)
299 4b4t_S RPN3, 26S proteasome re 46.5 51 0.0018 33.3 7.7 67 625-691 231-304 (523)
300 3ljn_A Hypothetical protein; a 45.5 92 0.0032 29.8 9.7 16 333-348 180-195 (364)
301 3mv2_A Coatomer subunit alpha; 42.6 1.6E+02 0.0054 27.6 9.7 59 648-720 196-256 (325)
302 1k1a_A B-cell lymphoma 3-encod 42.4 54 0.0018 29.0 7.0 28 161-188 13-40 (241)
303 2ion_A PDCD4, programmed cell 42.2 1.3E+02 0.0044 24.5 8.3 66 326-391 12-82 (152)
304 3bqo_A Telomeric repeat-bindin 42.2 74 0.0025 27.0 6.7 37 664-700 124-160 (211)
305 2wvi_A Mitotic checkpoint seri 41.8 1.5E+02 0.0051 24.5 9.6 52 571-624 78-130 (164)
306 4aez_C MAD3, mitotic spindle c 40.2 1.2E+02 0.0042 26.5 8.2 33 655-687 148-180 (223)
307 1ya0_A SMG-7 transcript varian 39.8 78 0.0027 32.1 8.0 52 667-718 162-213 (497)
308 4gq2_M Nucleoporin NUP120; bet 39.6 2.3E+02 0.0078 31.7 12.6 129 559-705 816-950 (950)
309 3kea_A K1L; tropism, ANK repea 39.5 1.6E+02 0.0056 26.8 10.0 143 28-179 35-183 (285)
310 3kae_A CDC27, possible protein 39.0 1.7E+02 0.0057 24.3 10.8 76 638-716 46-139 (242)
311 1bd8_A P19INK4D CDK4/6 inhibit 38.2 1E+02 0.0035 24.6 7.6 114 27-148 5-123 (156)
312 2nsz_A Programmed cell death p 38.1 1.4E+02 0.0049 23.3 9.5 65 327-391 11-80 (129)
313 2etb_A Transient receptor pote 38.1 2.1E+02 0.0071 25.4 10.4 116 27-147 5-157 (256)
314 2d2s_A Exocyst complex compone 37.2 1.9E+02 0.0064 25.7 9.2 28 690-717 90-117 (235)
315 3eu9_A Huntingtin-interacting 36.5 2.1E+02 0.0072 24.8 12.1 176 97-282 44-233 (240)
316 3ygs_P Procaspase 9; apoptosis 34.8 55 0.0019 24.2 4.6 39 536-574 51-89 (97)
317 3aji_A 26S proteasome non-ATPa 34.6 1.7E+02 0.0059 25.3 9.0 115 28-148 10-128 (231)
318 2nsz_A Programmed cell death p 34.2 1.7E+02 0.0057 23.0 8.3 65 226-292 10-79 (129)
319 3hra_A Ankyrin repeat family p 34.1 2.1E+02 0.0071 24.0 11.7 112 31-149 12-129 (201)
320 3aji_A 26S proteasome non-ATPa 34.0 2.3E+02 0.0078 24.5 11.0 19 130-148 10-28 (231)
321 2d2s_A Exocyst complex compone 33.6 1.2E+02 0.0041 26.9 7.4 24 26-49 23-46 (235)
322 1bpo_A Protein (clathrin); cla 33.4 2.5E+02 0.0086 27.9 9.9 71 412-482 352-425 (494)
323 1bd8_A P19INK4D CDK4/6 inhibit 33.2 64 0.0022 26.0 5.4 18 103-120 43-60 (156)
324 1oyz_A Hypothetical protein YI 32.3 2.8E+02 0.0096 25.0 22.9 127 550-689 139-266 (280)
325 2ion_A PDCD4, programmed cell 32.2 1.4E+02 0.0047 24.3 6.9 65 226-292 12-81 (152)
326 2zu6_B Programmed cell death p 32.1 3.1E+02 0.011 25.5 10.3 216 23-240 5-254 (307)
327 3eiq_C Programmed cell death p 30.9 3.6E+02 0.012 25.7 15.9 239 358-618 58-321 (358)
328 2r9g_A AAA ATPase, central reg 30.7 2.3E+02 0.0078 24.2 8.0 99 449-548 8-114 (204)
329 2ko4_A Mediator of RNA polymer 30.5 72 0.0025 22.2 4.0 40 244-283 24-63 (81)
330 4aez_C MAD3, mitotic spindle c 30.3 2.1E+02 0.0071 25.1 8.0 52 570-623 131-183 (223)
331 1oy3_D Transcription factor in 30.1 2.2E+02 0.0076 25.5 9.3 52 97-149 47-101 (282)
332 4ets_A Ferric uptake regulatio 29.6 1.1E+02 0.0038 25.2 6.1 71 37-108 13-85 (162)
333 2p1h_A APAF-1, apoptotic prote 29.5 1.6E+02 0.0055 21.3 6.4 38 535-572 49-86 (94)
334 3d9h_A CDNA FLJ77766, highly s 27.8 2.5E+02 0.0085 25.5 9.1 31 16-46 7-37 (285)
335 2etb_A Transient receptor pote 26.7 1.1E+02 0.0038 27.3 6.3 55 66-120 8-71 (256)
336 1te4_A Conserved protein MTH18 26.5 2E+02 0.0068 22.2 7.0 16 92-107 56-71 (131)
337 2xai_A ASB-9, ankyrin repeat a 26.2 3.4E+02 0.012 24.0 10.5 16 233-248 141-156 (261)
338 3ygs_P Procaspase 9; apoptosis 26.1 61 0.0021 23.9 3.5 38 137-174 51-88 (97)
339 3bu8_A Telomeric repeat-bindin 26.0 1.8E+02 0.0062 25.1 6.6 50 605-654 88-143 (235)
340 3bge_A Predicted ATPase; struc 25.6 2.4E+02 0.0082 24.0 7.2 46 457-502 9-57 (201)
341 4g8k_A 2-5A-dependent ribonucl 25.4 4.1E+02 0.014 24.7 14.1 288 96-391 26-331 (337)
342 2rfa_A Transient receptor pote 24.4 3.4E+02 0.012 23.3 11.6 56 233-289 128-184 (232)
343 2dzn_A Probable 26S proteasome 24.1 3.4E+02 0.012 23.2 9.4 85 28-118 6-95 (228)
344 3ctd_A Putative ATPase, AAA fa 23.6 2.9E+02 0.0099 23.8 7.4 49 454-502 34-85 (213)
345 3bu8_A Telomeric repeat-bindin 23.5 3.4E+02 0.012 23.5 7.7 24 229-252 120-143 (235)
346 3b7b_A Euchromatic histone-lys 22.9 2E+02 0.0067 25.1 7.2 23 98-120 47-69 (237)
347 3d9h_A CDNA FLJ77766, highly s 22.6 1.5E+02 0.005 27.1 6.4 180 97-290 61-249 (285)
348 2p1h_A APAF-1, apoptotic prote 22.0 98 0.0034 22.5 4.0 36 136-171 49-84 (94)
349 1oai_A Nuclear RNA export fact 21.8 69 0.0024 21.0 2.6 25 34-58 33-57 (59)
350 3utm_A Tankyrase-1; tankyrase, 21.8 4.8E+02 0.016 24.1 11.6 220 158-388 25-307 (351)
351 1ug3_A EIF4GI, eukaryotic prot 21.6 5.1E+02 0.018 24.4 10.1 62 227-290 15-80 (339)
352 3hra_A Ankyrin repeat family p 21.5 3.5E+02 0.012 22.5 9.7 52 332-388 11-66 (201)
353 1wty_A Hypothetical protein TT 21.2 2.6E+02 0.0088 21.4 6.4 68 568-642 3-70 (119)
354 2ijq_A Hypothetical protein; s 20.3 3.6E+02 0.012 22.1 8.5 51 669-719 44-103 (161)
355 2fe3_A Peroxide operon regulat 20.1 2E+02 0.007 23.0 5.9 37 202-238 35-71 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-38 Score=345.39 Aligned_cols=493 Identities=9% Similarity=-0.029 Sum_probs=334.7
Q ss_pred hhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHH
Q 004733 133 CTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLH 211 (733)
Q Consensus 133 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~ 211 (733)
+.+.|....+...++.++.+++..|+.++..+.+.|++++|..+|++|.. ..|+..++..+..++ ..|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34566777777788888878888899999999999999999999999985 457888888888888 899999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhh-cC----------------CCCccchHHHHHHHHhcCChHH
Q 004733 212 SLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAK-GY----------------VCDHISYNVMMDGLASVGRVEE 274 (733)
Q Consensus 212 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~----------------~~~~~~~~~li~~~~~~g~~~~ 274 (733)
+.+... ++++.+++.++.+|.+.|++++|.++|+++. .. .++..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 887543 6788899999999999999999999998532 21 1247789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhh-HHHHHHHccCch-hHHHH-----HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHH
Q 004733 275 ALIRFRDMLVASLRPSELT-FVSVMSACLCPR-VGYQV-----HAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFA 347 (733)
Q Consensus 275 a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~-~~~~~-----~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 347 (733)
|+++|++|.+.+ |+..+ +..+........ ..... +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998864 44333 333322221111 11111 2223333344445556666777778888888888888
Q ss_pred hccc--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHH
Q 004733 348 RLQE--KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSN 425 (733)
Q Consensus 348 ~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (733)
++.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+.. +..++ .
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~--------------------------------~ 343 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVY--------------------------------P 343 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTH--------------------------------H
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHH--------------------------------H
Confidence 8776 67777888888888888888888888877764311 22222 4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 426 ALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 426 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
.++.++.+.|++++|.++++.+. +.+..+|+.++..|.+.|++++|.++|+++.+.. |
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----------------- 404 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--P----------------- 404 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----------------
Confidence 55566666666666666666553 3345555556666666666666666666555421 2
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 503 LRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAM 579 (733)
Q Consensus 503 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 579 (733)
.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++
T Consensus 405 -----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 405 -----------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp -----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1344556666777777777777777776642 35667777788888888888888888888
Q ss_pred HHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC--chHHHHHHHHhhhcCChHHHHHHHHhcC--
Q 004733 580 QDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDY---GFIPA--EDHLSCMLDLLGRAGYLDEAERVINSQH-- 652 (733)
Q Consensus 580 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 652 (733)
.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..++..++.+|.+.|++++|.+.++++.
T Consensus 468 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 468 YALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7754 4456777788888888888888888888776542 44565 5677777788888888888887777655
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
.+.+...|..+..+|...|++++|...++++.+.+|+++..+..|+.+|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 33456677777788888888888888888888888888888887777653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-37 Score=338.55 Aligned_cols=478 Identities=10% Similarity=-0.017 Sum_probs=358.7
Q ss_pred CChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHH
Q 004733 187 RDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDG 265 (733)
Q Consensus 187 ~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~ 265 (733)
++...|+.++..+ +.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+....++..+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 3455555555555 556666666666655533 2444555555566666666666666665554333555555555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 004733 266 LASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMI 345 (733)
Q Consensus 266 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 345 (733)
|.+.|++++|+.+|+++ .|+... ...+.+.++.+
T Consensus 160 ~~~~g~~~~A~~~~~~~-----~~~~~~------------------------------------~~~~~~~~~~~----- 193 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGET-----NPFRKD------------------------------------EKNANKLLMQD----- 193 (597)
T ss_dssp HHHTTCHHHHHHHHCSS-----CTTC----------------------------------------------CCC-----
T ss_pred HHHHhhHHHHHHHHhcc-----CCcccc------------------------------------ccccccccccc-----
Confidence 55556655555555531 111100 00000000000
Q ss_pred HHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHhhcc-----hHHHHHH-HHHHHHhCCc
Q 004733 346 FARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFT-FGSLLASSGF-----IEMVEMI-HAFVFINGII 418 (733)
Q Consensus 346 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~-----~~~~~~~-~~~~~~~~~~ 418 (733)
.-...+..+|+.++.+|.+.|++++|++.|++|.+.+ |+... +..+...... ......+ +..+...+..
T Consensus 194 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 194 --GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp --SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred --cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 0001145678888888888888888888888887743 43322 2222221111 1111111 3334444555
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004733 419 TNIQVSNALISAYAKNERIKQAYQIFHNMSP--RNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSS 496 (733)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 496 (733)
+...+++.++..|.+.|++++|.++|+.+.. ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH
Confidence 5666777888999999999999999999985 788999999999999999999999999999876 3477889999999
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHH
Q 004733 497 CARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAV 573 (733)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 573 (733)
+.+.|+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998653 55788899999999999999999999998863 46779999999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-
Q 004733 574 SCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH- 652 (733)
Q Consensus 574 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 652 (733)
++|+++.+.+ +++..+|..++.+|.+.|++++|.++|+++.+. .+.+..++..++.+|.+.|++++|.++|+++.
T Consensus 428 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 428 SAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999865 457789999999999999999999999999976 34467899999999999999999999999874
Q ss_pred ------CCCC--hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 653 ------IQAR--SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 653 ------~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|+ ...|..++.+|.+.|++++|+..++++.+.+|+++.+|..++.+|...|++++|.++++++.+..+
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 3676 678999999999999999999999999999999999999999999999999999999999998654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.6e-25 Score=227.60 Aligned_cols=370 Identities=12% Similarity=0.129 Sum_probs=258.3
Q ss_pred HHhHhcCChHHHHHHHHhhhcCCCCc-cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHH
Q 004733 231 TMYFNCGNVVDACKVFEEAKGYVCDH-ISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQ 309 (733)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 309 (733)
..+.+.|++++|.+.++.+....|+. ..+..+...+.+.|++++|...++...+..
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----------------------- 63 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----------------------- 63 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 33445566666666665554433432 334444455556666666666665554431
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004733 310 VHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE--K-DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIR 386 (733)
Q Consensus 310 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 386 (733)
+.+...+..+...|.+.|++++|...|+++.. | +..+|..+..++...|++++|...|+++.+. .
T Consensus 64 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 131 (388)
T 1w3b_A 64 ----------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--N 131 (388)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--C
T ss_pred ----------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 12223334455556666666666666666544 3 3345667777777777777777777776653 3
Q ss_pred CChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHH
Q 004733 387 PDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFL 463 (733)
Q Consensus 387 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 463 (733)
|+.... +..+...+...|++++|.+.|+.+. +.+..+|..+...+.
T Consensus 132 p~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 180 (388)
T 1w3b_A 132 PDLYCV-------------------------------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180 (388)
T ss_dssp TTCTHH-------------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCcHHH-------------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 433322 1345555666666666666666553 334456666666666
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 464 LNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 464 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
..|++++|...|+++...+ |+ +...+..+...+...|++++|..
T Consensus 181 ~~g~~~~A~~~~~~al~~~--p~----------------------------------~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTLD--PN----------------------------------FLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CC----------------------------------cHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666532 32 23345566777777888888888
Q ss_pred HHHhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 004733 544 VFNMMI--EK-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG 620 (733)
Q Consensus 544 ~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 620 (733)
.|++.. .| +..++..+..++...|++++|++.|+++.+.. +.+..+|..+...+.+.|++++|...++++.+.
T Consensus 225 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 300 (388)
T 1w3b_A 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-- 300 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 877665 23 46778889999999999999999999999854 334677888999999999999999999999876
Q ss_pred CCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 621 FIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 621 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
.+.+..++..+..++.+.|++++|.+.++++. ..| +...+..+...+...|++++|...++++.+..|+++.++..++
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence 35567789999999999999999999999876 444 4667888999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 004733 699 NIYAAAGL 706 (733)
Q Consensus 699 ~~~~~~g~ 706 (733)
.++...|+
T Consensus 381 ~~~~~~~~ 388 (388)
T 1w3b_A 381 NTLKEMQD 388 (388)
T ss_dssp HHHHHTCC
T ss_pred HHHHHccC
Confidence 99888774
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.6e-24 Score=219.09 Aligned_cols=351 Identities=13% Similarity=0.069 Sum_probs=299.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHH
Q 004733 330 ITMYSSCGKIDEACMIFARLQE--K-DIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVE 406 (733)
Q Consensus 330 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 406 (733)
...+.+.|++++|...++.+.+ | +...+..+...+...|++++|...++...+.. |+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~------------------ 65 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL------------------ 65 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC------------------
Confidence 4556788999999999988765 4 34456677778888999999999988877642 22
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 004733 407 MIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSEL 483 (733)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 483 (733)
+...+..+...+.+.|++++|...|+.+. +.+..+|..+..++.+.|++++|.+.|+++.+..
T Consensus 66 -------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 131 (388)
T 1w3b_A 66 -------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN- 131 (388)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-
T ss_pred -------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 22334788899999999999999999875 4456689999999999999999999999998864
Q ss_pred CCC-HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH
Q 004733 484 RPD-EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNAL 559 (733)
Q Consensus 484 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l 559 (733)
|+ ...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+.+.|++++|...|+++.+ | +...|..+
T Consensus 132 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 132 -PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp -TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 54 4456677788888999999999999998764 33567888999999999999999999999863 3 45678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhc
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRA 638 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 638 (733)
...+...|++++|+..+++..+.. +.+..++..+...|...|++++|...++++.+. .| +...+..++.++.+.
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999854 334678889999999999999999999999975 44 466899999999999
Q ss_pred CChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 639 GYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 639 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
|++++|.+.++++. .+++...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|.+.+++
T Consensus 285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999876 5566778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 004733 717 LKRTG 721 (733)
Q Consensus 717 ~~~~~ 721 (733)
+.+..
T Consensus 365 a~~~~ 369 (388)
T 1w3b_A 365 AIRIS 369 (388)
T ss_dssp HHTTC
T ss_pred HHhhC
Confidence 98754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.7e-26 Score=239.08 Aligned_cols=182 Identities=12% Similarity=0.174 Sum_probs=129.8
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC---------hHHHHHHHHHHHHcCCCCchhH
Q 004733 454 TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS---------LRHGKQIHGYVLKNNLISKMSL 524 (733)
Q Consensus 454 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 524 (733)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566667777777777777777777777777777777777777765443 4566777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMI----EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACS 600 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 600 (733)
|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..||+.|+.+|+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-VVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHh
Confidence 7777777777777777777777764 3677777777777777777777777777777777 7777777777777777
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh
Q 004733 601 HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR 637 (733)
Q Consensus 601 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 637 (733)
+.|++++|.+++++|.+. |..|+..||+.++..+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 777777777777777766 777777777777666654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=2e-25 Score=231.01 Aligned_cols=179 Identities=11% Similarity=0.162 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhhHHHHHHHHHhCCC---------chHHHHHHHHHHHCCCCCCHHh
Q 004733 423 VSNALISAYAKNERIKQAYQIFHNMS----PRNIITWNTLINGFLLNGF---------PVQGLQHFSELLMSELRPDEYT 489 (733)
Q Consensus 423 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~~~ 489 (733)
+++.+|++|++.|++++|.++|++|. .||..+|++||.+|++.+. .++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45788999999999999999999996 6899999999999987765 5789999999999999999999
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHh
Q 004733 490 LSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI----EKDTISWNALISAYAQ 565 (733)
Q Consensus 490 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 565 (733)
|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999996 5899999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA 602 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 602 (733)
.|+.++|.++|++|.+.| +.|+..||+.++..|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence 999999999999999999 999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.6e-22 Score=215.72 Aligned_cols=252 Identities=8% Similarity=-0.034 Sum_probs=187.2
Q ss_pred CCCchHHHHHHHHHHH-----CCCCC--------CHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004733 465 NGFPVQGLQHFSELLM-----SELRP--------DEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITL 531 (733)
Q Consensus 465 ~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (733)
.|++++|...|+++.. ....| +...+..+...+...|++++|...++.+.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 6777777777777766 31122 2345566666777778888888887777765544 6667777788
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDG 608 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A 608 (733)
+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887653 345677778888888888888888888888744 33456777777888888888888
Q ss_pred HHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-------hhhHHHHHHHHHh---hCCHHHHH
Q 004733 609 TRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-------SDNWWALFSACAA---HGNLRLGR 677 (733)
Q Consensus 609 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~~~~~~l~~~~~~---~g~~~~A~ 677 (733)
...++++.+. .+.+...+..+..++.+.|++++|...++++. ..|+ ...+..+...+.. .|++++|.
T Consensus 358 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 358 ETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 8888888765 23346677788888888888888888887654 1222 2267777777888 88888888
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 678 IIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..++++.+..|+++.++..++.+|...|++++|.+++++..+...
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 888888888888888888888888888888888888888877543
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.3e-21 Score=207.96 Aligned_cols=420 Identities=13% Similarity=0.083 Sum_probs=190.3
Q ss_pred HHHHHHHHHhHhcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHcc
Q 004733 224 SVVNALITMYFNCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACL 302 (733)
Q Consensus 224 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 302 (733)
..+..+...+.+.|++++|.+.|+++....| +...|..+..++.+.|++++|+..++++.+.+ |+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~------------ 91 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PD------------ 91 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc------------
Confidence 3455566667777777777777777554444 45566667777777777777777777766542 22
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 303 CPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQS 382 (733)
Q Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 382 (733)
+..++..+..++...|++++|...|+.+.. +....+..+..+...+....+...++++..
T Consensus 92 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 151 (537)
T 3fp2_A 92 -------------------HSKALLRRASANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLS 151 (537)
T ss_dssp -------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC
T ss_pred -------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334456666777777777777753322 222222233444555555667777777644
Q ss_pred C------CCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchh---HHHHHHHHHHh--------cCCHHHHHHHHh
Q 004733 383 V------GIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQ---VSNALISAYAK--------NERIKQAYQIFH 445 (733)
Q Consensus 383 ~------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~ 445 (733)
. ...|+.......+..... +... ... ......+.. ....+...+.. .|++++|..+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 152 KDEGRGSQVLPSNTSLASFFGIFDS-HLEV---SSV-NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp -------CCCCCHHHHHHHHHTSCH-HHHH---HTS-CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred hCccccccccchHhHHHHHHHhcCh-HHHH---HHH-hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 2 122333222221111100 0000 000 000000000 11111111111 124455555555
Q ss_pred hcCC--C-Ch-------hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHH
Q 004733 446 NMSP--R-NI-------ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLK 515 (733)
Q Consensus 446 ~~~~--~-~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 515 (733)
.+.. | +. .++..+...+...|++++|...+++..... |+...+..+...+...|++++|...++...+
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 4431 1 11 123333444445555555555555554432 3344444444444555555555555444443
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004733 516 NNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAV 595 (733)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 595 (733)
... .+..+|..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 305 ~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 350 (537)
T 3fp2_A 305 LNP--------------------------------EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQL 350 (537)
T ss_dssp HCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHH
T ss_pred cCC--------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 321 223344444455555555555555555554432 1223344444
Q ss_pred HHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-------hhhHHHHHHHH
Q 004733 596 LSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-------SDNWWALFSAC 667 (733)
Q Consensus 596 l~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~~~~~~l~~~~ 667 (733)
...+...|++++|...++++.+. .+.+...+..+..++...|++++|...++++. ..|+ ...+......+
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 44555555555555555555443 12223344445555555555555555544432 0000 01122223334
Q ss_pred Hhh----------CCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 668 AAH----------GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 668 ~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
... |++++|+..++++.+..|+++.++..++.+|...|++++|.+++++..+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 444 55555555555555555555555555555555555555555555555443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.3e-21 Score=204.55 Aligned_cols=450 Identities=9% Similarity=-0.040 Sum_probs=287.1
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhH
Q 004733 156 VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYF 234 (733)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 234 (733)
.+......+.+.|++++|+..|+++.+.+ |+...+..+...+ ..|++++|...++.+++.+ +.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45666778888888888888888888754 6777777776666 8888888888888888765 445667788888888
Q ss_pred hcCChHHHHHHHHhhhcCCC-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHH
Q 004733 235 NCGNVVDACKVFEEAKGYVC-DHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQ 313 (733)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~ 313 (733)
+.|++++|...|+++....| +......++..+........+.+.+..+...+..|+...+..-.. .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~ 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE-------------R 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH-------------H
Confidence 88888888888888665444 444455555555544444444444444433332232222111000 0
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhccc---------C-CcccHHHHHHHHHh---cCChHHHHHHHHHH
Q 004733 314 AMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQE---------K-DIVSWNTMISTYAQ---RNLGRSAILAYLEM 380 (733)
Q Consensus 314 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m 380 (733)
.......|+. ......+..... | +...+......+.. .|++++|+..|+++
T Consensus 152 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 152 KDKQENLPSV----------------TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----CCCCH----------------HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred HhhccCCchh----------------HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 0000011111 111111111111 1 12233334444443 78999999999998
Q ss_pred HH-----CCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChh
Q 004733 381 QS-----VGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS--PRNII 453 (733)
Q Consensus 381 ~~-----~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 453 (733)
.. ....|+..... +.+...+..+...+...|++++|...|+.+. .|+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~ 271 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLK------------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271 (514)
T ss_dssp HHHHHHHTTTSTTCHHHH------------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHhhhhhccCccccccC------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHH
Confidence 77 32233332110 0122233455666666666666666666543 22244
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004733 454 TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYA 533 (733)
Q Consensus 454 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (733)
.+..+...+...|++++|...++++.... | .+...+..+...+.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD--S----------------------------------NNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC--T----------------------------------TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC--c----------------------------------CCHHHHHHHHHHHH
Confidence 55555566666666666666666655432 1 13344566777777
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004733 534 KCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTR 610 (733)
Q Consensus 534 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 610 (733)
..|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888888888877642 355678888888889999999999999998854 3356778888889999999999999
Q ss_pred HHHHhHhhcCCCCC----chHHHHHHHHhhh---cCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHH
Q 004733 611 IFDSMVNDYGFIPA----EDHLSCMLDLLGR---AGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAG 681 (733)
Q Consensus 611 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 681 (733)
.++++.+...-.++ ...+..+..++.. .|++++|...++++. .+.+...+..+...+...|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998875222222 3378888999999 999999999998765 34456678888999999999999999999
Q ss_pred HHhccCCCCchHHHHHHH
Q 004733 682 LLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 682 ~~~~~~p~~~~~~~~l~~ 699 (733)
++.+..|+++..+..+..
T Consensus 474 ~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 474 ESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHCSSHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHH
Confidence 999999999888776643
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=197.37 Aligned_cols=342 Identities=11% Similarity=0.047 Sum_probs=238.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHh
Q 004733 322 YTSVSNAAITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLAS 398 (733)
Q Consensus 322 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 398 (733)
+...+..+...+.+.|++++|..+|+++.. .+..+|..+..++...|++++|+..|+++.+.+ |+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~--------- 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDF--------- 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCc---------
Confidence 445566667777777777777777776654 345566667777777777777777777766542 221
Q ss_pred hcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch---hhHHHHHHHHHhCCCchHHH
Q 004733 399 SGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSP--R-NI---ITWNTLINGFLLNGFPVQGL 472 (733)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~~~~~~a~ 472 (733)
...+..+..+|.+.|++++|.+.|+.+.. | +. ..+..+...+...
T Consensus 94 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 144 (450)
T 2y4t_A 94 ----------------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ------- 144 (450)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------
Confidence 11224555666666666666666666542 1 22 3333332221000
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 004733 473 QHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE-- 550 (733)
Q Consensus 473 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 550 (733)
.+......+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|+++.+
T Consensus 145 ----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 145 ----------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp ----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 01111223444566666666666555432 23456677788888888888888888888753
Q ss_pred -CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhH
Q 004733 551 -KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAV------------LSACSHAGLVDDGTRIFDSMV 616 (733)
Q Consensus 551 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l------------l~~~~~~~~~~~A~~~~~~~~ 616 (733)
.+..+|..+...|...|++++|+..|+++.+. .|+. ..+..+ ...|...|++++|...++++.
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778899999999999999999999999884 4554 344444 678899999999999999998
Q ss_pred hhcCCCCC-----chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 617 NDYGFIPA-----EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 617 ~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
+. .|+ ...+..++.++.+.|++++|...++++. .+.+...+..+..+|...|++++|+..++++++..|+
T Consensus 285 ~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 285 KT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred hc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 76 454 3477888999999999999999999865 3446778999999999999999999999999999999
Q ss_pred CchHHHHHHHH------------HHhcC-----ChHHHHHHHHH-HHhCCCcCCC
Q 004733 690 KPSVYVLLSNI------------YAAAG-----LWEEAANIREL-LKRTGVIKQP 726 (733)
Q Consensus 690 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 726 (733)
++.++..++.+ |...| +.+++.+.+++ ..+..+.+.|
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999844 55556 56677888776 4555444433
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=4.9e-17 Score=177.66 Aligned_cols=636 Identities=10% Similarity=0.045 Sum_probs=425.6
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHH
Q 004733 22 LKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIY--SLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTIL 99 (733)
Q Consensus 22 ~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (733)
.-|..+.+-|-++|-++.|++.|..+.....+..++. .-.-|..-+.+ =+.+.+.++++.|+..+.+.+.++.-.+.
T Consensus 608 yd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva 686 (1630)
T 1xi4_A 608 YDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVA 686 (1630)
T ss_pred ccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHH
Confidence 3477788889999999999999986643322222221 11223333333 45688899999999877776666666566
Q ss_pred HHHhhccChHHHHHHHHhcCC---------------CCcchhhHHHHHhhccCChhHHHHHhccCCC-------------
Q 004733 100 SLYKNARDLVSVKRVFSEIQN---------------PDVYSWTTFLSACTKMGHVDYACEVFDKMPD------------- 151 (733)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------- 151 (733)
.-|...=..+...++|++... .|+.+....|.++++.|++.+++++.++-.-
T Consensus 687 ~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~ 766 (1630)
T 1xi4_A 687 SKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 766 (1630)
T ss_pred HHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhC
Confidence 666666556666666665432 6788889999999999999999999876431
Q ss_pred --CChh----------------------hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCC-----------hhhHHHHH
Q 004733 152 --RDLP----------------------VYNAMITGCTENGYEDIGIGLFREMHKLDVRRD-----------NYSFASVL 196 (733)
Q Consensus 152 --~~~~----------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll 196 (733)
+|.. .....|.+|.+.-++..+-.+...+.+.+...| .....-++
T Consensus 767 kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv 846 (1630)
T 1xi4_A 767 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELV 846 (1630)
T ss_pred CCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHH
Confidence 1110 012234555555555544444444443222111 11123334
Q ss_pred Hhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhh------------hcCCCCc-------
Q 004733 197 SVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEA------------KGYVCDH------- 256 (733)
Q Consensus 197 ~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~------------~~~~~~~------- 256 (733)
..+ +.+++..-...++.-+..| ..++.++|.|...|...++-.+ +.+.+- ....|..
T Consensus 847 ~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~iay~~ 923 (1630)
T 1xi4_A 847 AEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACVAYER 923 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHHHhcc
Confidence 444 5555666666677777777 5688899999999987654222 222110 1111211
Q ss_pred -cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCC--CcchHHHHHHHHHH
Q 004733 257 -ISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGF--EAYTSVSNAAITMY 333 (733)
Q Consensus 257 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~li~~~ 333 (733)
..-.-||....+++-++.--+++- + +-|...|..++.. +...-+++.++.....+ ..++.-....++.|
T Consensus 924 g~~d~eli~vt~~n~l~k~~arylv---~---r~d~~lW~~vl~~--~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf 995 (1630)
T 1xi4_A 924 GQCDLELINVCNENSLFKSLSRYLV---R---RKDPELWGSVLLE--SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF 995 (1630)
T ss_pred cCCcHHHHHHHhcchhHHHHHHHHH---H---hcCHHHHHHHhcC--CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence 112234444444444443222221 1 2355555555532 11222334444333332 23555567778888
Q ss_pred HhcCCHHHHHHHHHhccc-CC-----cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHH
Q 004733 334 SSCGKIDEACMIFARLQE-KD-----IVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEM 407 (733)
Q Consensus 334 ~~~g~~~~a~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 407 (733)
...|.+.+|.++++++.- ++ ...-+.++.+..+. +..+..+...+... .+..-...+....+..++|..
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----YDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----ccHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999874 22 23455666666666 55666666666542 223334455555566788877
Q ss_pred HHHHHHHhCCccchhHHHHHHHHH-HhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 004733 408 IHAFVFINGIITNIQVSNALISAY-AKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPD 486 (733)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 486 (733)
+++.... +...+..+ ...+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|
T Consensus 1071 IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD 1133 (1630)
T 1xi4_A 1071 IFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD 1133 (1630)
T ss_pred HHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC
Confidence 7776521 11212222 37888999999998774 3568889999999999999999999653 56
Q ss_pred HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 004733 487 EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQH 566 (733)
Q Consensus 487 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (733)
...|..++.+|.+.|+++++.+++...++.. ++....+.++.+|++.+++++...+. ..++...|..+...|...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhc
Confidence 7788889999999999999999999888765 33333446899999999998655553 355666777888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHH
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..++...|++..|..
T Consensus 1209 g~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred CCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999984 378889999999999999999998773 45788889999999999999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc--CChHHHHHHHH
Q 004733 647 VINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA--GLWEEAANIRE 715 (733)
Q Consensus 647 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 715 (733)
....+ ..++..+..++..|...|.+++|+.+++.++.++|.+...+..|+.+|.+- ++..++.++|.
T Consensus 1272 cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1272 CGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 87653 345566778899999999999999999999999999999999998888764 56667777665
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=8.1e-20 Score=191.02 Aligned_cols=296 Identities=14% Similarity=0.105 Sum_probs=252.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 004733 420 NIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSS 496 (733)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 496 (733)
+...+..+...+.+.|++++|..+|+.+. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 44556788899999999999999999875 5577889999999999999999999999999875 3457788889999
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhhHHH
Q 004733 497 CARISSLRHGKQIHGYVLKNNLISKM---SLGNAM------------ITLYAKCGDLDCSLRVFNMMIE---KDTISWNA 558 (733)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 558 (733)
+...|++++|...++.+.+.... +. ..+..+ ...+...|++++|...|+.+.+ .+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999875432 22 444444 4458899999999999999863 46778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hHHHHH------
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAE-DHLSCM------ 631 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l------ 631 (733)
++.+|...|++++|++.|+++.+.. +.+..++..+...|...|++++|...++++.+. .|+. ..+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 9999999999999999999999864 456788999999999999999999999999865 4543 344444
Q ss_pred ------HHHhhhcCChHHHHHHHHhcC-CCCC-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 632 ------LDLLGRAGYLDEAERVINSQH-IQAR-----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 632 ------~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
+..+.+.|++++|...++++. ..|+ ...+..+..++.+.|++++|+..++++.+..|+++.++..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 788999999999999999876 4454 3367778888999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 004733 700 IYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+|...|++++|...++++.+..+
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHhcCHHHHHHHHHHHHHhCc
Confidence 99999999999999999988643
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=7.6e-19 Score=188.26 Aligned_cols=437 Identities=9% Similarity=-0.033 Sum_probs=288.7
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Q 004733 155 PVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMY 233 (733)
Q Consensus 155 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 233 (733)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+...+ ..|++++|...++.+++.+ +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456777788888888999999888888753 22444555555555 8888888888888888775 44677888888889
Q ss_pred HhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHccCchhH
Q 004733 234 FNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVAS------LRPSELTFVSVMSACLCPRVG 307 (733)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~ 307 (733)
...|++++|...|+.+ ...|+.. ...+..+...+...+|+..++++.... ..|+...
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~-------------- 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS-------------- 166 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH--------------
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH--------------
Confidence 9999999999999643 3224322 223445555666678888888875531 2222222
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcc---cHHHHHHHHH--------hcCChHHHHHH
Q 004733 308 YQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIV---SWNTMISTYA--------QRNLGRSAILA 376 (733)
Q Consensus 308 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~g~~~~a~~~ 376 (733)
+..+....+.+.+...+......+.. ....+...+. ..|++++|..+
T Consensus 167 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 167 ----------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp ----------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 23344555566555555544443332 2222222221 12578888888
Q ss_pred HHHHHHCCCCCChhh-HHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChh
Q 004733 377 YLEMQSVGIRPDEFT-FGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS--PRNII 453 (733)
Q Consensus 377 ~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 453 (733)
++++.+.. |+... +.. -...+..+...+...|++++|...|+... .|+..
T Consensus 225 ~~~~l~~~--p~~~~~~~~-------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 225 YHSLLSAN--TVDDPLREN-------------------------AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHHHHC----CCCHHHHHH-------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHC--CCcchhhHH-------------------------HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 88887643 33211 100 01123566778889999999999999875 45577
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 004733 454 TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYA 533 (733)
Q Consensus 454 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (733)
.+..+...+...|++++|...++++.... +.+...+.. +...+.
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-----------------------------------l~~~~~ 321 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH-----------------------------------RGQMYF 321 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH-----------------------------------HHHHHH
Confidence 88889999999999999999999998764 223444433 444555
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004733 534 KCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTR 610 (733)
Q Consensus 534 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 610 (733)
..|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 55666666666665542 245567778888888888888888888888754 3345677778888888888888888
Q ss_pred HHHHhHhhcCCCCC----chHHHHHHHHhhhc----------CChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHH
Q 004733 611 IFDSMVNDYGFIPA----EDHLSCMLDLLGRA----------GYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLR 674 (733)
Q Consensus 611 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 674 (733)
.++++.+...-.++ ...+.....++... |++++|...++++. .+.+...+..+...+...|+++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 88888765211111 12234455667777 88999999888766 3445667888888899999999
Q ss_pred HHHHHHHHHhccCCCCchHHHHH
Q 004733 675 LGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 675 ~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
+|...++++.+..|+++.....+
T Consensus 480 ~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 480 EAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999887765533
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=5.6e-16 Score=169.45 Aligned_cols=611 Identities=13% Similarity=0.082 Sum_probs=312.2
Q ss_pred HHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCCh
Q 004733 60 LSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHV 139 (733)
Q Consensus 60 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 139 (733)
++.+...+...+...++..++...++.+.+-+....+.++.+-... ...-|..++....- +..-+..+...|-+.|-+
T Consensus 546 ~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~-~pqvadail~~~~f-thyd~~~IA~LCE~aGl~ 623 (1630)
T 1xi4_A 546 ITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMH-APQVADAILGNQMF-THYDRAHIAQLCEKAGLL 623 (1630)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhcc-chhHHHHHHhcCcc-ccccHHHHHHHHHHcCcH
Confidence 4444444444455555555554444444443444444444444332 33334444433221 333456677888899999
Q ss_pred hHHHHHhccCCCC-------ChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhH-------------HHHHHhh
Q 004733 140 DYACEVFDKMPDR-------DLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSF-------------ASVLSVC 199 (733)
Q Consensus 140 ~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------------~~ll~~~ 199 (733)
+.|++.+..+... +...-.-++.. ...=+.+.++++++.|.+.+++-+.... ..++..+
T Consensus 624 qrale~y~d~~dikR~~~~~~~~~~~~l~~~-fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~f 702 (1630)
T 1xi4_A 624 QRALEHFTDLYDIKRAVVHTHLLNPEWLVNY-FGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELF 702 (1630)
T ss_pred HHHHHhcCCHHHHHHHhhccCcCCHHHHHHH-HhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHH
Confidence 9999999866421 11112223333 3335778999999999876655443222 2233333
Q ss_pred -ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhh-----------------cCCC-----Cc
Q 004733 200 -DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAK-----------------GYVC-----DH 256 (733)
Q Consensus 200 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----------------~~~~-----~~ 256 (733)
+.+.++.-.-++..++. ...|+.+....|.+.++.|++.+..++.++-. ...| |.
T Consensus 703 e~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr 780 (1630)
T 1xi4_A 703 ESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR 780 (1630)
T ss_pred HHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccc
Confidence 33344433334443333 45578888899999999999888888776421 1112 11
Q ss_pred cc-hHHHHHHHHhcCChH------------HHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHH------------HH
Q 004733 257 IS-YNVMMDGLASVGRVE------------EALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQ------------VH 311 (733)
Q Consensus 257 ~~-~~~li~~~~~~g~~~------------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~------------~~ 311 (733)
.. ..-|+..+.+++... .+-.+...+.. +..+......++.+....--..+ ++
T Consensus 781 ~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld--~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll 858 (1630)
T 1xi4_A 781 FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLD--VDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLL 858 (1630)
T ss_pred cccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhc--CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 11 122333333333322 22222222211 12333444444443331000111 11
Q ss_pred HHHHH---hCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcc------------cCCccc----------HHHHHHHHHh
Q 004733 312 AQAMK---SGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQ------------EKDIVS----------WNTMISTYAQ 366 (733)
Q Consensus 312 ~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------~~~~~~----------~~~li~~~~~ 366 (733)
.-+++ ..-..++.++|+|...|...++-.+ +++.+=. ++|+.. -.-||...-+
T Consensus 859 ~p~LE~~~~~g~~~~~~hnalakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~ 936 (1630)
T 1xi4_A 859 LPWLEARIHEGCEEPATHNALAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNE 936 (1630)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhc
Confidence 11111 1235577888999998887664332 2222111 122211 1223333333
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc--hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHH
Q 004733 367 RNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF--IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIF 444 (733)
Q Consensus 367 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 444 (733)
++.+...-+.+ .+ +-|...|..++..... .+............... +.-....+.+|...|.+.+|++++
T Consensus 937 n~l~k~~aryl---v~---r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~--PeeVs~~vKaf~~aglp~EaieLL 1008 (1630)
T 1xi4_A 937 NSLFKSLSRYL---VR---RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQD--PEEVSVTVKAFMTADLPNELIELL 1008 (1630)
T ss_pred chhHHHHHHHH---HH---hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccC--HHHhHHHHHHHHhCCCHHHHHHHH
Confidence 33332221111 11 1344445444422221 12222222222222233 333356677788888888888888
Q ss_pred hhcC-CCC-----hhhHHHHH---------------------------HHHHhCCCchHHHHHHHHHHHCCCCCCHHhHH
Q 004733 445 HNMS-PRN-----IITWNTLI---------------------------NGFLLNGFPVQGLQHFSELLMSELRPDEYTLS 491 (733)
Q Consensus 445 ~~~~-~~~-----~~~~~~li---------------------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 491 (733)
+++. .++ ....+.++ ..+...|.+++|..+|++.. -......
T Consensus 1009 EKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~ 1083 (1630)
T 1xi4_A 1009 EKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQ 1083 (1630)
T ss_pred HHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHH
Confidence 8775 222 12223333 33455566666666666531 0111111
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHH
Q 004733 492 VALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKE 571 (733)
Q Consensus 492 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (733)
.++. ..+++++|.++.++. .++.+|..+..++...|++++|...|.+. .|...|..++.++.+.|++++
T Consensus 1084 VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1084 VLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHH
Confidence 1111 445555555555533 34666777777777777777777777664 556666777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhc
Q 004733 572 AVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQ 651 (733)
Q Consensus 572 A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (733)
|++.+...++.. +++.....++.+|.+.+++++...+. + .|+...+..+.+.|...|++++|..+|..+
T Consensus 1153 AIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 777777766532 33322333555566655555322221 1 223344445666666666666666666553
Q ss_pred CCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC-------------------------CCchHHHHHHHHHHhcCC
Q 004733 652 HIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQ-------------------------DKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 652 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------------------------~~~~~~~~l~~~~~~~g~ 706 (733)
..|..++.++.+.|+++.|+..++++....+ .++..+..++..|.+.|.
T Consensus 1222 ------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred ------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC
Confidence 2555556666666666666666655533322 355567788888999999
Q ss_pred hHHHHHHHHHHHhC
Q 004733 707 WEEAANIRELLKRT 720 (733)
Q Consensus 707 ~~~A~~~~~~~~~~ 720 (733)
+++|+.+++.....
T Consensus 1296 feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1296 FEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999876543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=8.6e-18 Score=169.69 Aligned_cols=296 Identities=14% Similarity=0.093 Sum_probs=243.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 004733 421 IQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSC 497 (733)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 497 (733)
...+..+...+...|++++|...|+.+. +.+...+..+...+...|++++|...++++.+.. +-+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 3445677888999999999999999874 4567788889999999999999999999998764 33567788888999
Q ss_pred cccCChHHHHHHHHHHHHcCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHH
Q 004733 498 ARISSLRHGKQIHGYVLKNNLI--SKMSLGNAM------------ITLYAKCGDLDCSLRVFNMMIE---KDTISWNALI 560 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 560 (733)
...|++++|...++...+.... .+...+..+ ...+...|++++|.+.++++.+ .+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999998876431 233344433 5788899999999999998863 4667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hHHH----------
Q 004733 561 SAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAE-DHLS---------- 629 (733)
Q Consensus 561 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~---------- 629 (733)
..+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+. ..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHH
Confidence 99999999999999999999854 445678889999999999999999999999976 3443 3332
Q ss_pred --HHHHHhhhcCChHHHHHHHHhcC-CCCChh-----hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 004733 630 --CMLDLLGRAGYLDEAERVINSQH-IQARSD-----NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIY 701 (733)
Q Consensus 630 --~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 701 (733)
.+...+.+.|++++|...++++. ..|+.. .+..+..++...|++++|...++++.+..|+++.++..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 23677899999999999999866 344432 2445677889999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 004733 702 AAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 702 ~~~g~~~~A~~~~~~~~~~~~ 722 (733)
...|++++|.+.++++.+..+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999987654
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.5e-17 Score=164.36 Aligned_cols=309 Identities=11% Similarity=0.034 Sum_probs=237.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhc
Q 004733 355 VSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKN 434 (733)
Q Consensus 355 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (733)
..+..+...+...|++++|+..|+++.... |+. ...+..+...+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~-------------------------------~~~~~~~a~~~~~~ 50 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDN-------------------------------YIAYYRRATVFLAM 50 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccc-------------------------------HHHHHHHHHHHHHc
Confidence 345556667777777777777777776632 221 11225566777778
Q ss_pred CCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC---C-HHhHHHH------------HH
Q 004733 435 ERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRP---D-EYTLSVA------------LS 495 (733)
Q Consensus 435 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~l------------l~ 495 (733)
|++++|...++.+. +.+...+..+...+...|++++|...+++..+.. | + ...+..+ ..
T Consensus 51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (359)
T 3ieg_A 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQAL 128 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877764 3455677778888888888888888888887653 4 2 2233222 46
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHH
Q 004733 496 SCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEA 572 (733)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 572 (733)
.+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 77888999999999988887643 4567788899999999999999999998864 3567888999999999999999
Q ss_pred HHHHHHHHHcCCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-----hHHHHHHHH
Q 004733 573 VSCFKAMQDVGRIKPD-QATFT------------AVLSACSHAGLVDDGTRIFDSMVNDYGFIPAE-----DHLSCMLDL 634 (733)
Q Consensus 573 ~~~~~~~~~~~~~~p~-~~~~~------------~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~ 634 (733)
...+++..+.. |+ ...+. .+...+...|++++|...++++.+. .|+. ..+..+..+
T Consensus 208 ~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 208 LSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence 99999999854 44 33332 2255688999999999999999976 3442 235567889
Q ss_pred hhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC
Q 004733 635 LGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
+.+.|++++|...+++.. .+.++..+..+...+...|++++|...++++.+.+|+++.++..+..++...+
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999876 34467788999999999999999999999999999999999999887765443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.2e-17 Score=164.48 Aligned_cols=287 Identities=12% Similarity=0.001 Sum_probs=224.2
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004733 418 ITNIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVAL 494 (733)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 494 (733)
..+...+..+...+...|++++|.++|+.+. +.+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3445555677888888899999999998875 4455677778888889999999999999988764 33566777788
Q ss_pred HHhcccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChH
Q 004733 495 SSCARIS-SLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGK 570 (733)
Q Consensus 495 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 570 (733)
..+...| ++++|...++...+.. +.+...+..+...+...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8899999888887654 33456778888888899999999999888763 34566777888888899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC-------CCCCchHHHHHHHHhhhcCChHH
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYG-------FIPAEDHLSCMLDLLGRAGYLDE 643 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 643 (733)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..++...|++++
T Consensus 177 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999988854 34456788888888889999999999988876521 13335688888888999999999
Q ss_pred HHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH-hcCChH
Q 004733 644 AERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA-AAGLWE 708 (733)
Q Consensus 644 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 708 (733)
|...+++.. .+.+...+..+..++...|++++|...++++.+..|+++..+..++.++. ..|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 998888765 34456677888888888999999999999999999999988888888884 556543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=6.1e-17 Score=161.31 Aligned_cols=267 Identities=12% Similarity=-0.009 Sum_probs=228.3
Q ss_pred CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 004733 449 PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAM 528 (733)
Q Consensus 449 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 528 (733)
+.+...+..+...+...|++++|+.+++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3456677888889999999999999999998865 3345566677888899999999999999998764 3356778888
Q ss_pred HHHHHhcC-CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 004733 529 ITLYAKCG-DLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGL 604 (733)
Q Consensus 529 ~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 604 (733)
...+...| ++++|.+.|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999998864 356688999999999999999999999999854 3345677778889999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C----------CCChhhHHHHHHHHHhhCCH
Q 004733 605 VDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I----------QARSDNWWALFSACAAHGNL 673 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~~~~~~~~~l~~~~~~~g~~ 673 (733)
+++|...++++.+. .+.+...+..+..++...|++++|...++++. . +.....+..+..++...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999865 23446788999999999999999999998755 1 33356788999999999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 674 RLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
++|+..++++.+..|+++.++..++.+|...|++++|.+++++..+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999877654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.4e-17 Score=165.96 Aligned_cols=283 Identities=8% Similarity=-0.070 Sum_probs=224.0
Q ss_pred HHHhcCCHHHHHH-HHhhcC---CC----ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccC
Q 004733 430 AYAKNERIKQAYQ-IFHNMS---PR----NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARIS 501 (733)
Q Consensus 430 ~~~~~g~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 501 (733)
++...|++++|.. .++... +. +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445688888888 887553 21 34568888999999999999999999999875 446678888889999999
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHH---------------HHHHH
Q 004733 502 SLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNA---------------LISAY 563 (733)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~ 563 (733)
++++|...++.+.+.. +.+..++..+...+...|++++|.+.++++.+ | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999988765 34677888899999999999999999998863 2 2222211 13334
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDE 643 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (733)
...|++++|...|+++.+...-.++..++..+...|...|++++|...++++.+. .+.+...+..+..++.+.|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 4889999999999999985411114778889999999999999999999999976 23346789999999999999999
Q ss_pred HHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-----------chHHHHHHHHHHhcCChHHH
Q 004733 644 AERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK-----------PSVYVLLSNIYAAAGLWEEA 710 (733)
Q Consensus 644 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 710 (733)
|...++++. .+.+...+..+..++...|++++|...++++.+..|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 999999866 34456788899999999999999999999999999888 88999999999999999999
Q ss_pred HHHHHH
Q 004733 711 ANIREL 716 (733)
Q Consensus 711 ~~~~~~ 716 (733)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998763
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.4e-16 Score=153.85 Aligned_cols=269 Identities=13% Similarity=0.031 Sum_probs=188.0
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh----hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHH
Q 004733 431 YAKNERIKQAYQIFHNMSPRNI----ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHG 506 (733)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 506 (733)
....|++..|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345555555555555442221 1223344555556665555554432 1234445555555555566666666
Q ss_pred HHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 004733 507 KQIHGYVLKNNLIS-KMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRI 585 (733)
Q Consensus 507 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 585 (733)
.+.++.+...+..| +...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 159 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--- 159 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence 66666655554333 344556677889999999999999998 457778889999999999999999999999984
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhH
Q 004733 586 KPDQATF---TAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNW 660 (733)
Q Consensus 586 ~p~~~~~---~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~ 660 (733)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++. . +.++.++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664322 22334455668999999999999987 45567788999999999999999999999866 3 4456688
Q ss_pred HHHHHHHHhhCCHHH-HHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 004733 661 WALFSACAAHGNLRL-GRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
..++..+...|+..+ +..+++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 888888999998865 67899999999999988755 344566666665543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=3.3e-15 Score=158.90 Aligned_cols=211 Identities=9% Similarity=0.008 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---C-ChhhHHHHHHHHHhc
Q 004733 505 HGKQIHGYVLKNNLISKMSLGNAMITLYAK-------CGDLD-------CSLRVFNMMIE---K-DTISWNALISAYAQH 566 (733)
Q Consensus 505 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 566 (733)
++..+++...... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6667788777652 3456777777777765 68887 89999998864 3 466888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH-hhhcCChH
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQ--ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDL-LGRAGYLD 642 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 642 (733)
|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+. .|. ...+...+.. +...|+.+
T Consensus 335 g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 999999999999998 45653 47888888888899999999999999865 343 3333332222 34689999
Q ss_pred HHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch----HHHHHHHHHHhcCChHHHHHHHHH
Q 004733 643 EAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS----VYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 643 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
+|..+|++.. ..| ++..|..++..+...|+.++|..+++++.+..|.++. +|...+......|+.+.+..++++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999765 334 5678889999999999999999999999998877765 777778878888999999999998
Q ss_pred HHhCCC
Q 004733 717 LKRTGV 722 (733)
Q Consensus 717 ~~~~~~ 722 (733)
+.+.-+
T Consensus 489 ~~~~~p 494 (530)
T 2ooe_A 489 RFTAFR 494 (530)
T ss_dssp HHHHTH
T ss_pred HHHHCc
Confidence 876543
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=9.8e-15 Score=153.58 Aligned_cols=350 Identities=11% Similarity=0.012 Sum_probs=254.9
Q ss_pred chHHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCcccHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhH
Q 004733 322 YTSVSNAAITMYSS----CGKIDEACMIFARLQE-KDIVSWNTMISTYAQ----RNLGRSAILAYLEMQSVGIRPDEFTF 392 (733)
Q Consensus 322 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 392 (733)
++.....+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+.+|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555566666776 7899999999988765 466677888888888 889999999999887754 22222
Q ss_pred HHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh----cCCHHHHHHHHhhcC-CCChhhHHHHHHHHHh---
Q 004733 393 GSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAK----NERIKQAYQIFHNMS-PRNIITWNTLINGFLL--- 464 (733)
Q Consensus 393 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~--- 464 (733)
..+...|.. .+++++|...|+... ..+...+..+...|..
T Consensus 115 --------------------------------~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 115 --------------------------------QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp --------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred --------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 345555665 678888888887765 3355566777777776
Q ss_pred -CCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c
Q 004733 465 -NGFPVQGLQHFSELLMSELRPDEYTLSVALSSCAR----ISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAK----C 535 (733)
Q Consensus 465 -~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 535 (733)
.++.++|.+.|++..+.| +...+..+-..+.. .++.++|...++...+.+ +...+..+...|.. .
T Consensus 163 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 677888888888887764 45555666666655 778888888888877765 44556666777765 6
Q ss_pred CCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc-----CCH
Q 004733 536 GDLDCSLRVFNMMIE-KDTISWNALISAYAQ----HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHA-----GLV 605 (733)
Q Consensus 536 ~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~~~ 605 (733)
+++++|...|++..+ .+...+..+...|.. .+++++|+++|++..+.| +...+..+...|... +++
T Consensus 237 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCH
Confidence 788888888887764 345566667777766 788888888888887755 345555666666655 788
Q ss_pred HHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC---ChHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHH
Q 004733 606 DDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG---YLDEAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRI 678 (733)
Q Consensus 606 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 678 (733)
++|...+++..+. + +...+..+..+|...| ++++|.+.+++.....++..+..+...|.. .+++++|..
T Consensus 313 ~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 313 EQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 8888888888765 3 3456667777777656 678888888876644667777777777777 788888888
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 004733 679 IAGLLLEREQDKPSVYVLLSNIYAA----AGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 679 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 722 (733)
.++++.+.. ++.++..|+.+|.. .++.++|...|++..+.+.
T Consensus 389 ~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 389 WMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888887754 57788888888887 7888888888888887663
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=7.9e-15 Score=154.31 Aligned_cols=193 Identities=9% Similarity=0.007 Sum_probs=141.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhc-----CCh
Q 004733 500 ISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAK----CGDLDCSLRVFNMMIEK-DTISWNALISAYAQH-----GEG 569 (733)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~ 569 (733)
.++.++|..+++...+.+ +...+..+...|.. .++.++|...|++..+. ++..+..+...|... +++
T Consensus 236 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCH
Confidence 344455555554444432 22334445555555 67888888888877643 556677777777776 899
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh----cCChH
Q 004733 570 KEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG---LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR----AGYLD 642 (733)
Q Consensus 570 ~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 642 (733)
++|+.+|++..+.| +...+..+...|...| ++++|.+.|++..+. + ++..+..+..+|.. .++++
T Consensus 313 ~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 313 EQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999998865 3456666666666555 788999999998875 3 56778888888888 78999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHHHhccCCC---CchHHHHHHHHHHh
Q 004733 643 EAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRIIAGLLLEREQD---KPSVYVLLSNIYAA 703 (733)
Q Consensus 643 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 703 (733)
+|...+++.....++..+..+...|.. .+|+++|...++++.+.+|+ ++.....|+.++..
T Consensus 385 ~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 385 QAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999887745567778888888887 89999999999999999854 77777777776554
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=6.9e-16 Score=162.17 Aligned_cols=366 Identities=12% Similarity=0.057 Sum_probs=231.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-----------C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCC
Q 004733 323 TSVSNAAITMYSSCGKIDEACMIFARLQE-----------K-DIVSWNTMISTYAQRNLGRSAILAYLEMQSVG---IRP 387 (733)
Q Consensus 323 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p 387 (733)
...|+.+...+...|++++|++.|++..+ + ...+|+.+...|...|++++|...+++..... ..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45678888899999999999999987642 1 23568889999999999999999998875421 111
Q ss_pred ChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh--cCCHHHHHHHHhhcC---CCChhhHHHHHHH-
Q 004733 388 DEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAK--NERIKQAYQIFHNMS---PRNIITWNTLING- 461 (733)
Q Consensus 388 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~li~~- 461 (733)
... ....++.....++.+ .+++++|...|++.. +.++..+..+...
T Consensus 131 ~~~----------------------------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 131 YRI----------------------------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp SCC----------------------------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cch----------------------------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000 011122333333433 456889999998764 3445555544444
Q ss_pred --HHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHh----cccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004733 462 --FLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSC----ARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKC 535 (733)
Q Consensus 462 --~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (733)
+...++.++|++.+++.++.. +.+...+..+...+ ...++.++|.+.++...... +.+..++..+...|...
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHc
Confidence 445677888999888887754 22334444443333 34567788888888877654 33456677888899999
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 004733 536 GDLDCSLRVFNMMIE--K-DTISWNALISAYAQ-------------------HGEGKEAVSCFKAMQDVGRIKPDQATFT 593 (733)
Q Consensus 536 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 593 (733)
|++++|...+++..+ | +..++..+..+|.. .+.++.|...+++..+.. +.+..++.
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 338 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCS 338 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHH
T ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--Cchhhhhh
Confidence 999999999998763 3 34456555555432 234677888888888854 33455678
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch----HHHHHHH-HhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 004733 594 AVLSACSHAGLVDDGTRIFDSMVNDYGFIPAED----HLSCMLD-LLGRAGYLDEAERVINSQH-IQARSDNWWALFSAC 667 (733)
Q Consensus 594 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 667 (733)
.+...|...|++++|...|++..+. .|+.. .+..+.. .+...|++++|+..+++.. ..|+......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----- 410 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----- 410 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-----
Confidence 8888999999999999999999865 34332 2233333 2346789999999988755 6666543322
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCcccccC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPGCSWIG 732 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 732 (733)
....+..++++.++.+|+++.++..||.+|...|++++|++.|++..+.+.......+|++
T Consensus 411 ----~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 411 ----MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ----HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ----HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2345667788889999999999999999999999999999999999999988777899987
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.2e-16 Score=156.76 Aligned_cols=376 Identities=12% Similarity=0.066 Sum_probs=178.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHH
Q 004733 200 DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRF 279 (733)
Q Consensus 200 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 279 (733)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 556777777777776 23358888888898999999998888653 56778888888888889999988876
Q ss_pred HHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHH
Q 004733 280 RDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNT 359 (733)
Q Consensus 280 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 359 (733)
+...+. .++ +.+.+.++.+|.+.|+++++.++++ .|+..+|+.
T Consensus 85 ~~ark~--~~~--------------------------------~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~ 127 (449)
T 1b89_A 85 QMARKK--ARE--------------------------------SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQ 127 (449)
T ss_dssp ----------------------------------------------------------CHHHHTTTTT---CC-------
T ss_pred HHHHHh--Ccc--------------------------------chhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHH
Confidence 655543 222 2333667888999999999887775 377779999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHH
Q 004733 360 MISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQ 439 (733)
Q Consensus 360 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 439 (733)
+...|...|++++|...|..+. .| ..+..++.+.|++++
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a~---------n~--------------------------------~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNVS---------NF--------------------------------GRLASTLVHLGEYQA 166 (449)
T ss_dssp ---------CTTTHHHHHHHTT---------CH--------------------------------HHHHHHHHTTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhh---------hH--------------------------------HHHHHHHHHhccHHH
Confidence 9999999999999999999761 23 688899999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCC
Q 004733 440 AYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLI 519 (733)
Q Consensus 440 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 519 (733)
|.+.+..+. ++.+|..++.+|...|+++.|......+. +.|+ -...++..|.+.|.++++..+++...... +
T Consensus 167 AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ 238 (449)
T 1b89_A 167 AVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-R 238 (449)
T ss_dssp HHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST-T
T ss_pred HHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-H
Confidence 999999883 78899999999999999999965544322 2343 35568888999999999999998887655 4
Q ss_pred CchhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----
Q 004733 520 SKMSLGNAMITLYAK--CGDLDCSLRVFNMMIE--------KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRI---- 585 (733)
Q Consensus 520 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---- 585 (733)
-....|+-+.-+|++ .+++.+..+.|..-.. .+...|.-+...|...++++.|.. .|.++...
T Consensus 239 ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~ 315 (449)
T 1b89_A 239 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKE 315 (449)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhh
Confidence 456677777777765 4566677777765432 256789999999999999998876 34442101
Q ss_pred ---------CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCC
Q 004733 586 ---------KPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQAR 656 (733)
Q Consensus 586 ---------~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 656 (733)
..+...|...+..|.. ....++.-+-..... .+. ....+..+.+.|.+.-+..++..+.....
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~-~ld-----~~r~v~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSP-RLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGG-GCC-----HHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHh-ccC-----cHHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 1223344444444441 111122111111111 111 13445566666666666666666664445
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHH
Q 004733 657 SDNWWALFSACAAHGNLRLGRIIAGL 682 (733)
Q Consensus 657 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 682 (733)
..+-.++-..|....|++.-+...+.
T Consensus 388 ~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 388 KSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55566777778888888876665553
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.7e-16 Score=160.43 Aligned_cols=262 Identities=9% Similarity=-0.058 Sum_probs=209.2
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004733 451 NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMIT 530 (733)
Q Consensus 451 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 530 (733)
+...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567888888888899999999998888764 3456778888888888899999998888888764 335677888899
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 531 LYAKCGDLDCSLRVFNMMIEKD-------------TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 531 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+...-.++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999886421 122334578889999999999999999996511115778999999
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 675 (733)
.|...|++++|...++++.+. .+.+...+..+..+|.+.|++++|+..++++. ..| +...+..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999976 33457789999999999999999999999866 344 46788899999999999999
Q ss_pred HHHHHHHHhccCCC------------CchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 676 GRIIAGLLLEREQD------------KPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 676 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
|...++++++..|+ +..++..|+.++...|+.+.|..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998877 367899999999999999998887753
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.3e-14 Score=154.43 Aligned_cols=215 Identities=8% Similarity=0.040 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhcc-------cCChH-------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 004733 470 QGLQHFSELLMSELRPDEYTLSVALSSCAR-------ISSLR-------HGKQIHGYVLKNNLISKMSLGNAMITLYAKC 535 (733)
Q Consensus 470 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (733)
++..+|++.+... +-+...|......+.. .|+++ +|..+++...+.-.+.+...+..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6777888877753 3345666666666654 68876 7888888887643445678888999999999
Q ss_pred CCHHHHHHHHHhcCC--CC-h-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HhccCCHHHHH
Q 004733 536 GDLDCSLRVFNMMIE--KD-T-ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSA-CSHAGLVDDGT 609 (733)
Q Consensus 536 ~~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~-~~~~~~~~~A~ 609 (733)
|++++|..+|+++.+ |+ . ..|..++..+.+.|++++|..+|++..+.. |+ ...|...... +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHcCChhHHH
Confidence 999999999998863 43 3 478888888889999999999999999843 43 3333332222 33689999999
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-C----hhhHHHHHHHHHhhCCHHHHHHHHHHH
Q 004733 610 RIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-R----SDNWWALFSACAAHGNLRLGRIIAGLL 683 (733)
Q Consensus 610 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 683 (733)
.+|++..+. .+.+...+..+++.+.+.|+.++|..+|++.. ..| + ...|..++......|+.+.+..+.+++
T Consensus 412 ~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999977 23357789999999999999999999999865 222 2 237888888888999999999999999
Q ss_pred hccCCCC
Q 004733 684 LEREQDK 690 (733)
Q Consensus 684 ~~~~p~~ 690 (733)
.+..|++
T Consensus 490 ~~~~p~~ 496 (530)
T 2ooe_A 490 FTAFREE 496 (530)
T ss_dssp HHHTHHH
T ss_pred HHHCchh
Confidence 9999853
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=4e-16 Score=155.14 Aligned_cols=256 Identities=7% Similarity=-0.081 Sum_probs=177.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004733 457 TLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCG 536 (733)
Q Consensus 457 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 536 (733)
.+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 1233333444444444444444444444444332 123444555666666666
Q ss_pred CHHHHHHHHHhcCC--C-ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004733 537 DLDCSLRVFNMMIE--K-DTISWNAL--------------IS-AYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSA 598 (733)
Q Consensus 537 ~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 598 (733)
++++|.+.++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Confidence 66666666666542 1 12222222 22 3677889999999999999865 4467788889999
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHH
Q 004733 599 CSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLG 676 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 676 (733)
|...|++++|...++++.+. .+.+...+..+..++...|++++|...++++. .+.+...+..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999876 23446788899999999999999999998865 344567888899999999999999
Q ss_pred HHHHHHHhccCCC------------CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 677 RIIAGLLLEREQD------------KPSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 677 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
...++++.+..|+ ++.++..++.+|...|++++|..++++..
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999 78899999999999999999999987443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=7e-16 Score=149.03 Aligned_cols=248 Identities=10% Similarity=0.016 Sum_probs=203.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 004733 459 INGFLLNGFPVQGLQHFSELLMSELRPDE--YTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCG 536 (733)
Q Consensus 459 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 536 (733)
++-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 3543 3446678899999999999976543 24567778888999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004733 537 DLDCSLRVFNMMI----EK-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRI 611 (733)
Q Consensus 537 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 611 (733)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999874 24 455667778899999999999999987 25677888899999999999999999
Q ss_pred HHHhHhhcCCCCCchHH---HHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 612 FDSMVNDYGFIPAEDHL---SCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 612 ~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
++++.+. .|+.... ..++..+...|++++|..+|+++. .+.++..+..+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999976 4654321 233455556699999999999877 5566778899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcCChHH-HHHHHHHHHhCCC
Q 004733 687 EQDKPSVYVLLSNIYAAAGLWEE-AANIRELLKRTGV 722 (733)
Q Consensus 687 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 722 (733)
+|+++.++..++.++...|+.++ +.++++++.+..+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999976 5789999887553
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=8.1e-16 Score=155.78 Aligned_cols=278 Identities=12% Similarity=-0.016 Sum_probs=203.8
Q ss_pred cCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHH-HHHHHHHCCC-CC--CHHhHHHHHHHhcccCChHHHHHH
Q 004733 434 NERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQ-HFSELLMSEL-RP--DEYTLSVALSSCARISSLRHGKQI 509 (733)
Q Consensus 434 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~ 509 (733)
.+.++.+...|+.+...+.. ++...|++++|+. .+++...... .| +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555555433322 3344578888988 8876654321 12 345677888999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004733 510 HGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIK 586 (733)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (733)
++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..++..+...+...|++++|.+.++++.+..
T Consensus 87 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 162 (368)
T 1fch_A 87 FEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--- 162 (368)
T ss_dssp HHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 99999864 34677888999999999999999999998863 467789999999999999999999999999854
Q ss_pred CCHH-HHHH---------------HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 587 PDQA-TFTA---------------VLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 587 p~~~-~~~~---------------ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
|+.. .+.. .+..+...|++++|...++++.+.....++...+..+..++.+.|++++|...+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4432 2221 23334488999999999999997722222477889999999999999999999998
Q ss_pred cC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 651 QH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 651 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+. .+.+...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|..+++++.+..+
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 66 3445678899999999999999999999999999999999999999999999999999999999887543
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.3e-15 Score=149.58 Aligned_cols=284 Identities=12% Similarity=0.091 Sum_probs=116.9
Q ss_pred hcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc---hHHHHHHHHH
Q 004733 335 SCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF---IEMVEMIHAF 411 (733)
Q Consensus 335 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~ 411 (733)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..+...+.. .+.+...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 556667777777766444 36667777777777777777766542 344455444443333 4444444443
Q ss_pred HHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHH
Q 004733 412 VFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLS 491 (733)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 491 (733)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 3332 2334555777788888888888777665 356667888888888888888888888765 3677
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHH
Q 004733 492 VALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKE 571 (733)
Q Consensus 492 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 571 (733)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 7888888888888887777766 367777888888888888888866655543 344444457777788888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC------CchHHHHHHHHhhhcCChHHHH
Q 004733 572 AVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP------AEDHLSCMLDLLGRAGYLDEAE 645 (733)
Q Consensus 572 A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 645 (733)
|+.+++...... +-....|.-|..+|++- .+++..+.++....+-.++| +...|..++..|...++++.|.
T Consensus 226 ai~lLe~aL~le--~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLE--RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTST--TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCc--HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 888888776533 22345566665566544 34444444444333324444 3556777777788888887776
Q ss_pred HHHHh
Q 004733 646 RVINS 650 (733)
Q Consensus 646 ~~~~~ 650 (733)
...-.
T Consensus 303 ~tm~~ 307 (449)
T 1b89_A 303 ITMMN 307 (449)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65443
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.3e-15 Score=153.98 Aligned_cols=233 Identities=11% Similarity=-0.008 Sum_probs=195.6
Q ss_pred CHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 004733 486 DEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISA 562 (733)
Q Consensus 486 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 562 (733)
+...+......+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999998865 34677889999999999999999999998863 357789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHH-----------HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQA-----------TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCM 631 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~-----------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 631 (733)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|...++++.+...-.++...+..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999984 35432 22334778899999999999999999872222257789999
Q ss_pred HHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHH
Q 004733 632 LDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEE 709 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 709 (733)
..++...|++++|.+.++++. .+.+...+..+..++...|++++|+..++++++..|+++.++..++.+|...|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999866 445577899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004733 710 AANIRELLKRTGV 722 (733)
Q Consensus 710 A~~~~~~~~~~~~ 722 (733)
|..+++++.+...
T Consensus 300 A~~~~~~al~~~~ 312 (365)
T 4eqf_A 300 AVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999887543
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=5.7e-15 Score=136.18 Aligned_cols=194 Identities=15% Similarity=0.062 Sum_probs=157.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 004733 519 ISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAV 595 (733)
Q Consensus 519 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 595 (733)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 45666778888899999999999999998864 356688889999999999999999999999954 3345678888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHH
Q 004733 596 LSACSHA-----------GLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWA 662 (733)
Q Consensus 596 l~~~~~~-----------~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 662 (733)
...+... |++++|...+++..+. .|+ ...+..+..++...|++++|+..+++.. ...++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999999976 454 6688899999999999999999999866 2267778899
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
+..++...|++++|+..++++++.+|+++.++..++.++...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.7e-14 Score=137.80 Aligned_cols=214 Identities=8% Similarity=0.039 Sum_probs=152.9
Q ss_pred HHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhhHHHHHHH
Q 004733 493 ALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K----D----TISWNALISA 562 (733)
Q Consensus 493 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~l~~~ 562 (733)
+...+...|++++|...++...+.. .+...+..+..++...|++++|.+.+++..+ | + ...|..+...
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 3333344444444444444444333 3444555566666666666666666666542 1 1 4567777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCCh
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYL 641 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 641 (733)
+...|++++|...|+++.+ +.|+.. .+...|++++|...++++... .| +...+..+...+...|++
T Consensus 89 ~~~~~~~~~A~~~~~~a~~---~~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLT---EHRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHh---cCchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888887 446533 345567788888888888754 33 355777788888888888
Q ss_pred HHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 642 DEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 642 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++|...++++. .+.+...+..+..++...|++++|+..++++.+..|+++..+..++.+|...|++++|...+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888765 3445667788888888999999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 004733 720 TG 721 (733)
Q Consensus 720 ~~ 721 (733)
..
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 54
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=9e-15 Score=145.27 Aligned_cols=264 Identities=10% Similarity=0.012 Sum_probs=212.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 004733 421 IQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSC 497 (733)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 497 (733)
...+-.+...+...|++++|..+|+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3344567788899999999999998875 4566788888999999999999999999998864 34677888888999
Q ss_pred cccCChHHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHHhcCC---CChhhHHHH
Q 004733 498 ARISSLRHGKQIHGYVLKNNLISKMSLGNAM--------------IT-LYAKCGDLDCSLRVFNMMIE---KDTISWNAL 559 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 559 (733)
...|++++|...++...+..... ...+..+ .. .+...|++++|.+.++++.+ .+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQY-EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTT-TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 99999999999999988754322 2222222 22 36778899999999998863 356788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG 639 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 639 (733)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..++.+.|
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999854 445678889999999999999999999999876 2345678899999999999
Q ss_pred ChHHHHHHHHhcC-CCCC-------------hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 640 YLDEAERVINSQH-IQAR-------------SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 640 ~~~~A~~~~~~~~-~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
++++|.+.++++. ..|+ ...+..+..++...|++++|...++++++..|++
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999998765 3333 5678888999999999999999998877765543
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=3.2e-13 Score=141.72 Aligned_cols=382 Identities=12% Similarity=-0.031 Sum_probs=194.8
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 004733 255 DHISYNVMMDGLASVGRVEEALIRFRDMLVAS--LRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITM 332 (733)
Q Consensus 255 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~ 332 (733)
....||.+...+...|++++|++.|++..+.- ..++ ..-+....+|+.+..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--------------------------~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--------------------------QAEIRSLVTWGNYAWV 103 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--------------------------GCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--------------------------ccchHHHHHHHHHHHH
Confidence 45578999999999999999999998875420 0000 0011123455777888
Q ss_pred HHhcCCHHHHHHHHHhccc-----C------CcccHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCChhhHHHHHH--
Q 004733 333 YSSCGKIDEACMIFARLQE-----K------DIVSWNTMISTYAQ--RNLGRSAILAYLEMQSVGIRPDEFTFGSLLA-- 397 (733)
Q Consensus 333 ~~~~g~~~~a~~~~~~~~~-----~------~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-- 397 (733)
|...|++++|...+++... . ...+++....++.. .+++++|+..|++..+. .|+...+...+.
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIA 181 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999999887653 1 12345555555554 45789999999998874 455433221111
Q ss_pred -----hhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh----cCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhC
Q 004733 398 -----SSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAK----NERIKQAYQIFHNMS---PRNIITWNTLINGFLLN 465 (733)
Q Consensus 398 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 465 (733)
.....+.+...++...+... .+...+..+...+.. .|+.++|.+.++... +.+...+..+...|...
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred HHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc
Confidence 01112222233332222211 112222222222222 234445555554432 33344455555555555
Q ss_pred CCchHHHHHHHHHHHCCCCCC-HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 004733 466 GFPVQGLQHFSELLMSELRPD-EYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRV 544 (733)
Q Consensus 466 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 544 (733)
|++++|...+++..+.. |+ ...+..+...+...+. ...... ...........+..+.|...
T Consensus 261 ~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVF---------QVMNLR-------ENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHH---------HHHHC-------------CHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHH---------HhhhHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 55555555555554432 22 2222222211110000 000000 00000001112335677777
Q ss_pred HHhcC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHH-HHhccCCHHHHHHHHHHhH
Q 004733 545 FNMMI---EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA----TFTAVLS-ACSHAGLVDDGTRIFDSMV 616 (733)
Q Consensus 545 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~-~~~~~~~~~~A~~~~~~~~ 616 (733)
++... ..+...+..+...+...|++++|+..|++..+.. |+.. .+..+.. .....|++++|+..|++..
T Consensus 323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77765 2356678889999999999999999999999854 4432 2233332 3457899999999999998
Q ss_pred hhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHH
Q 004733 617 NDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVY 694 (733)
Q Consensus 617 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 694 (733)
+ +.|+........ ..+.+++++.. .+.++.++..+..++...|++++|+..++++++..|.+|.+.
T Consensus 400 ~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 400 K---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp H---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred h---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 5 466644332222 23334444332 345567899999999999999999999999999999998877
Q ss_pred HHHH
Q 004733 695 VLLS 698 (733)
Q Consensus 695 ~~l~ 698 (733)
.-+|
T Consensus 468 ~~~G 471 (472)
T 4g1t_A 468 SWNG 471 (472)
T ss_dssp ----
T ss_pred hcCC
Confidence 6655
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3.1e-14 Score=135.89 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=180.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCC--Cc----hhHHHH
Q 004733 454 TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLI--SK----MSLGNA 527 (733)
Q Consensus 454 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 527 (733)
.+..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++...+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45556666666777777777777766655 56666666777777777777777777666543211 11 467778
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCC
Q 004733 528 MITLYAKCGDLDCSLRVFNMMIE--KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGL 604 (733)
Q Consensus 528 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 604 (733)
+...+...|++++|...|++..+ |+. ..+...|++++|...++++... .|+ ...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcC
Confidence 88889999999999999988764 442 3456678899999999999884 454 4567888889999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHH
Q 004733 605 VDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGL 682 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 682 (733)
+++|...++++.+. .+.+...+..+..++.+.|++++|...+++.. .+.+...+..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999876 23456788899999999999999999998866 344567888899999999999999999999
Q ss_pred HhccC------CCCchHHHHHHHH
Q 004733 683 LLERE------QDKPSVYVLLSNI 700 (733)
Q Consensus 683 ~~~~~------p~~~~~~~~l~~~ 700 (733)
+.+.. |++..++..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99999 8888887777654
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=161.18 Aligned_cols=144 Identities=14% Similarity=0.118 Sum_probs=119.7
Q ss_pred cchhhHHHHHhhccCChhHHHHHhccCC-------CCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 004733 123 VYSWTTFLSACTKMGHVDYACEVFDKMP-------DRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASV 195 (733)
Q Consensus 123 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 195 (733)
..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997753 689999999999999999999999999999999999999999999
Q ss_pred HHhh-ccCch-HHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhh-cCCCC------ccchHHHHHHH
Q 004733 196 LSVC-DAGLL-EFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAK-GYVCD------HISYNVMMDGL 266 (733)
Q Consensus 196 l~~~-~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~------~~~~~~li~~~ 266 (733)
|.++ +.|.. +.|.+++++|.+.|+.||..+|++++....+.+ +++.++++. +..|+ ..+...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9877 88874 789999999999999999999999987665543 333333332 23332 44556666777
Q ss_pred HhcC
Q 004733 267 ASVG 270 (733)
Q Consensus 267 ~~~g 270 (733)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 7665
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=160.52 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMI-------EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFT 593 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 593 (733)
-..+||++|++||+.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.| +.||..||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 34567777788888888888887776542 4778888888888888888888888888888888 888888888
Q ss_pred HHHHHHhccCCH-HHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHH
Q 004733 594 AVLSACSHAGLV-DDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDE 643 (733)
Q Consensus 594 ~ll~~~~~~~~~-~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 643 (733)
++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHH
Confidence 888888877764 6777888888877 888888888777765555433333
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=3.1e-13 Score=130.03 Aligned_cols=240 Identities=8% Similarity=-0.056 Sum_probs=144.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCC
Q 004733 460 NGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS--KMSLGNAMITLYAKCGD 537 (733)
Q Consensus 460 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 537 (733)
..+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++...+....+ ....+..+...+...|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 33444444444444444444432 1112233344444444444444444444444421111 12235666777777777
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004733 538 LDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDS 614 (733)
Q Consensus 538 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~ 614 (733)
+++|.+.|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.+++
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777652 345677778888888888888888888887743 22345555555233344588888888888
Q ss_pred hHhhcCCCCC-chHHHHHHHHhhhcCC---hHHHHHHHHhcC----CCCCh------hhHHHHHHHHHhhCCHHHHHHHH
Q 004733 615 MVNDYGFIPA-EDHLSCMLDLLGRAGY---LDEAERVINSQH----IQARS------DNWWALFSACAAHGNLRLGRIIA 680 (733)
Q Consensus 615 ~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~~------~~~~~l~~~~~~~g~~~~A~~~~ 680 (733)
+.+. .|+ ...+..+..++...|+ +++|...+++.. ..|+. ..+..+...+...|++++|...+
T Consensus 168 a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 168 VLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8765 333 5566667777777776 666777666544 22332 35666777888899999999999
Q ss_pred HHHhccCCCCchHHHHHHHHHHhcC
Q 004733 681 GLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 681 ~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
+++.+.+|+++.++..+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999988888876655443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=3.1e-13 Score=128.39 Aligned_cols=198 Identities=10% Similarity=-0.025 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSA 598 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 598 (733)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 44556677788888888888888887752 356678888888999999999999999998854 3456778888888
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHH
Q 004733 599 CSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 675 (733)
|...|++++|.++++++.+. +..|+ ...+..+..++...|++++|...++++. .+.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998862 34554 5577888889999999999999998765 33456678888889999999999
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 676 GRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
|...++++.+..|+++..+..++.+|...|++++|.++++++.+..+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999987654
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=2.7e-13 Score=130.78 Aligned_cols=239 Identities=10% Similarity=-0.029 Sum_probs=174.8
Q ss_pred CCchHHHHHHHHHHHCCCC---CCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004733 466 GFPVQGLQHFSELLMSELR---PDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSL 542 (733)
Q Consensus 466 ~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 542 (733)
|++++|+..++++.+.... .+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4556666666666554211 123445555566666666666666666665543 224566777888888999999999
Q ss_pred HHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 543 RVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 543 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
..|+++.+ .+...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99988763 35678889999999999999999999999984 466655555556667779999999999888876
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.+++...+ .++..+...++.++|.+.+++.. ..|. ...+..+...+...|++++|...++++.+.+|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 47777888888899999998766 3332 4567888889999999999999999999999988654
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 004733 694 YVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~ 714 (733)
+ +.++...|++++|++.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788999999998876
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1e-13 Score=130.86 Aligned_cols=198 Identities=11% Similarity=0.108 Sum_probs=142.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHH
Confidence 344556667777788888888888887753 245677778888888888888888888888754 345667778888
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 675 (733)
.+...|++++|.+.++++.+. .+.+...+..+..++.+.|++++|...++++. .+.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888888889999888888876 23456677888888888889999888888765 34456677788888888899999
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 676 GRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
|+..++++.+..|+++.++..++.+|...|++++|.++++++.+..+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999988888888888999999999999999999988877544
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=6.7e-13 Score=123.52 Aligned_cols=199 Identities=12% Similarity=0.024 Sum_probs=167.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 355667778888889999999999988753 356678888899999999999999999998854 445677888888
Q ss_pred HHhcc-CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCH
Q 004733 598 ACSHA-GLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNL 673 (733)
Q Consensus 598 ~~~~~-~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 673 (733)
.+... |++++|...++++.+. +..|+ ...+..+..++...|++++|...++++. .+.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 9999999999999873 34444 5678888999999999999999998766 334466788888999999999
Q ss_pred HHHHHHHHHHhccCC-CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 674 RLGRIIAGLLLEREQ-DKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
++|...++++.+..| +++..+..++.++...|+.++|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999999999 9999999999999999999999999999876543
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=5.1e-13 Score=119.79 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=143.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 004733 552 DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCM 631 (733)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l 631 (733)
+...|..+...|...|++++|++.|++.++.. +-+..++..+..+|...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 45678889999999999999999999999854 334567888888999999999999999999876 23345577778
Q ss_pred HHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHH
Q 004733 632 LDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEE 709 (733)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 709 (733)
...+...++++.|...+.+.. .+.+...+..+...+...|++++|+..++++.+.+|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999988766 444566788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 004733 710 AANIRELLKRTGV 722 (733)
Q Consensus 710 A~~~~~~~~~~~~ 722 (733)
|++.+++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999987653
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=3.4e-12 Score=122.74 Aligned_cols=224 Identities=10% Similarity=-0.040 Sum_probs=160.2
Q ss_pred ChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 004733 451 NIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMIT 530 (733)
Q Consensus 451 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 530 (733)
+..++..+...+...|++++|+..|++..+.+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 44455666666666677777777776666522 2223344555
Q ss_pred HHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 531 LYAK----CGDLDCSLRVFNMMIE-KDTISWNALISAYAQ----HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 531 ~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
.|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHc
Confidence 5555 6677777777766553 355566677777777 788888888888887744 56667777777777
Q ss_pred ----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh----cCChHHHHHHHHhcCCCCChhhHHHHHHHHHh----
Q 004733 602 ----AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR----AGYLDEAERVINSQHIQARSDNWWALFSACAA---- 669 (733)
Q Consensus 602 ----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 669 (733)
.+++++|...+++..+. + +...+..+..+|.. .+++++|...+++.....++..+..+...+..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred CCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence 78888888888888765 3 45566677777777 78888888888776534456667777777888
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA----AGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 722 (733)
.+++++|...++++.+.+| +..+..++.+|.. .|++++|.+++++..+.|.
T Consensus 199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888888888888765 6778888888888 8888889888888887764
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=6.3e-13 Score=127.88 Aligned_cols=229 Identities=9% Similarity=-0.019 Sum_probs=186.5
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh----hHHHHHHH
Q 004733 489 TLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KDTI----SWNALISA 562 (733)
Q Consensus 489 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 562 (733)
.+......+...|++++|...++...+... .+...+..+...+...|++++|...+++..+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 445566778899999999999999987643 3455778888899999999999999998864 3333 37889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCCh
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYL 641 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 641 (733)
+...|++++|+..|++..+.. +.+...+..+...|...|++++|...+++..+. .|+ ...+..+...+...+++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999954 345578889999999999999999999999854 444 55677777344455699
Q ss_pred HHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCC---HHHHHHHHHHHhccC---CCC-----chHHHHHHHHHHhcCChH
Q 004733 642 DEAERVINSQH-IQA-RSDNWWALFSACAAHGN---LRLGRIIAGLLLERE---QDK-----PSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 642 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 708 (733)
++|.+.++++. ..| +...+..+..++...|+ +++|...++++.+.. |+. ..++..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999876 344 45677778888888888 888999999999876 442 257889999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 004733 709 EAANIRELLKRTGVI 723 (733)
Q Consensus 709 ~A~~~~~~~~~~~~~ 723 (733)
+|.+++++..+..+.
T Consensus 239 ~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 239 KADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999886643
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=8.1e-12 Score=128.98 Aligned_cols=248 Identities=9% Similarity=0.066 Sum_probs=148.6
Q ss_pred HHHHHHHHhcC----CHHHHHHHHhhcCCCChhhHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 004733 425 NALISAYAKNE----RIKQAYQIFHNMSPRNIITWNTLINGFLLNG---FPVQGLQHFSELLMSELRPDEYTLSVALSSC 497 (733)
Q Consensus 425 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 497 (733)
..+...|...+ ..+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+.
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~------ 217 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVD------ 217 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHH------
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHH------
Confidence 34445555555 3444555555555555556667777777777 6777777777776665 23333222
Q ss_pred cccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HhcCChH
Q 004733 498 ARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKC----GDLDCSLRVFNMMIEKDTISWNALISA-Y--AQHGEGK 570 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~ 570 (733)
.+...|... +++++|...|++....++..+..+... + ...++++
T Consensus 218 -----------------------------~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 218 -----------------------------SVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp -----------------------------HHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHH
T ss_pred -----------------------------HHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Confidence 233333322 566666666666652244455555555 3 3567788
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh----cCCh
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG-----LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR----AGYL 641 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 641 (733)
+|+++|++..+.| +...+..|...|. .| ++++|...|++.. . | ++.....|..+|.. ..++
T Consensus 269 ~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 269 QMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCH
Confidence 8888888877755 4555555555555 44 7888888887775 2 2 44566666666655 3377
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCchHHHHHHHHH--HhcCChHHHHHHHH
Q 004733 642 DEAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIY--AAAGLWEEAANIRE 715 (733)
Q Consensus 642 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~ 715 (733)
++|...+++.....++.....+...|.. .+|.++|...++++.+..+.+. ...+..+. ...++.++|..+.+
T Consensus 339 ~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 339 QKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8888888776644555556666666553 4578888888888887765443 33333332 23356677777777
Q ss_pred HHHhC
Q 004733 716 LLKRT 720 (733)
Q Consensus 716 ~~~~~ 720 (733)
+.++.
T Consensus 417 ~~~~~ 421 (452)
T 3e4b_A 417 QELAA 421 (452)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=5.6e-13 Score=125.79 Aligned_cols=213 Identities=12% Similarity=0.030 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004733 453 ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLY 532 (733)
Q Consensus 453 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (733)
..|..+...+...|++++|...|+++.+.. |+ +...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~~~ 67 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFANLL 67 (243)
T ss_dssp ------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHHH
Confidence 345555556666666666666666665532 21 334455666777
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 004733 533 AKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGT 609 (733)
Q Consensus 533 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~ 609 (733)
...|++++|...++++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHH
Confidence 777888888888777652 356678888889999999999999999998864 446677888888999999999999
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 610 RIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 610 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
..++++.+. .+.+...+..+..++.+.|++++|...++++. .+.+...+..+..++...|++++|...++++.+..
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999876 33456788889999999999999999998766 34456688889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhcC
Q 004733 688 QDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 688 p~~~~~~~~l~~~~~~~g 705 (733)
|+++.++..++.+....|
T Consensus 224 p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCHHHHHHHTC------
T ss_pred cchHHHHHHHHHHHhhcc
Confidence 999999888876554433
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=9.3e-13 Score=126.94 Aligned_cols=221 Identities=13% Similarity=0.009 Sum_probs=182.8
Q ss_pred hcccCChHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChH
Q 004733 497 CARISSLRHGKQIHGYVLKNNL---ISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGK 570 (733)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 570 (733)
....+++++|...++.+.+... +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999987642 22467788899999999999999999999863 35778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
+|...|+++.+.. +.+...+..+...|...|++++|...++++.+. .|+..........+...|++++|...+++
T Consensus 95 ~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999954 345678889999999999999999999999976 56655555555666788999999999976
Q ss_pred cC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC----chHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 651 QH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK----PSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 651 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.. ..|+......++..+...++.++|...++++.+..|.. +..+..++.+|...|++++|..++++..+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 54 33433444457777888899999999999999887743 68899999999999999999999999988653
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=3.3e-12 Score=131.90 Aligned_cols=343 Identities=10% Similarity=-0.004 Sum_probs=196.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcch---HHHHHHHHHHHHhCCccchhHHHHHHHHHHhcC-
Q 004733 360 MISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFI---EMVEMIHAFVFINGIITNIQVSNALISAYAKNE- 435 (733)
Q Consensus 360 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 435 (733)
+...+.+.|++++|+.+|++..+.|..+-...+..+....+.. +.+...++...+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4556677888888888888887766433333222222222223 5555555555433 3344445555444444
Q ss_pred ----CHHHHHHHHhhcC-CCChhhHHHHHHHHHhCCCch---HHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHH
Q 004733 436 ----RIKQAYQIFHNMS-PRNIITWNTLINGFLLNGFPV---QGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGK 507 (733)
Q Consensus 436 ----~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 507 (733)
+.++|...|+... ..+...+..|...|...+... ++.+.+......|. ......+...+...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 5667777777654 233446666666666655433 34444444444442 233344445555555555544
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHhc----CChHHHHHHHH
Q 004733 508 QIHGYVLKNNLISKMSLGNAMITLYAKCG---DLDCSLRVFNMMIEK---DTISWNALISAYAQH----GEGKEAVSCFK 577 (733)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~ 577 (733)
.....+.+.-...++..+..+...|...| +.++|.+.|++..+. +...+..+...|... +++++|+++|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44333333222333446677777777777 777888888776532 223335566666544 57888888888
Q ss_pred HHHHcCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC-----ChHHHHHHHH
Q 004733 578 AMQDVGRIKPDQATFTAVLSA-C--SHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG-----YLDEAERVIN 649 (733)
Q Consensus 578 ~~~~~~~~~p~~~~~~~ll~~-~--~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 649 (733)
+.. .| +...+..+... + ...+++++|...|++..+. | +...+..|..+|. .| ++++|...|+
T Consensus 242 ~aa-~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 242 KIA-PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHG-GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHc-CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 876 44 23344444444 3 4577888888888887765 4 5556666777766 44 7888888888
Q ss_pred hcCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 004733 650 SQHIQARSDNWWALFSACAA----HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA----AGLWEEAANIRELLKRTG 721 (733)
Q Consensus 650 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 721 (733)
+.. ..++.....+...|.. ..|+++|...++++.+. .++.....|+..|.. ..+.++|...+++..+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 777 5566666666665554 33788888888887664 456677788877764 447888888888887776
Q ss_pred C
Q 004733 722 V 722 (733)
Q Consensus 722 ~ 722 (733)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=7e-12 Score=118.94 Aligned_cols=207 Identities=10% Similarity=-0.010 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004733 452 IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITL 531 (733)
Q Consensus 452 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (733)
...|..+...+...|++++|...|+++.... |+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 3456666777777777777777777766543 21 23344556666
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDD 607 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 607 (733)
+...|++++|.+.++++.+ .+...+..+...+...|++++|.++++++.+.+ ..|+ ...+..+...+...|++++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT-LYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT-TCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc-cCcccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777776642 355677788888889999999999999988743 3454 4567778888889999999
Q ss_pred HHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 608 GTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 608 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
|...++++.+. .+.+...+..+..++...|++++|...++++. .+.+...+..+...+...|++++|...++++.+
T Consensus 160 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 160 AKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998876 23346678888999999999999999998765 334455677888888999999999999999999
Q ss_pred cCCCCchHHHHH
Q 004733 686 REQDKPSVYVLL 697 (733)
Q Consensus 686 ~~p~~~~~~~~l 697 (733)
..|+++.....+
T Consensus 238 ~~p~~~~~~~~l 249 (252)
T 2ho1_A 238 LYPGSLEYQEFQ 249 (252)
T ss_dssp HCTTSHHHHHHH
T ss_pred HCCCCHHHHHHH
Confidence 999998776543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=3.2e-12 Score=127.49 Aligned_cols=228 Identities=11% Similarity=0.090 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 004733 453 ITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLY 532 (733)
Q Consensus 453 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 532 (733)
..|..+...+...|++++|+..+++.+... |+ +...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~----------------------------------~~~a~~~~g~~l 141 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AA----------------------------------NYTVWHFRRVLL 141 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--cc----------------------------------CHHHHHHHHHHH
Confidence 456667777777788888888888777643 44 333456667777
Q ss_pred HhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004733 533 AKCGD-LDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDG 608 (733)
Q Consensus 533 ~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A 608 (733)
...|+ +++|+..|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|
T Consensus 142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHH
Confidence 77886 8888888888763 356788888999999999999999999999954 33567788888899999999999
Q ss_pred HHHHHHhHhhcCCCC-CchHHHHHHHHhhh-cCChHHH-----HHHHHhcC-CCCC-hhhHHHHHHHHHhhC--CHHHHH
Q 004733 609 TRIFDSMVNDYGFIP-AEDHLSCMLDLLGR-AGYLDEA-----ERVINSQH-IQAR-SDNWWALFSACAAHG--NLRLGR 677 (733)
Q Consensus 609 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~-~~~~-~~~~~~l~~~~~~~g--~~~~A~ 677 (733)
+..++++++. .| +...|..+..++.+ .|..++| ++.+++.. ..|+ ...|..+...+...| ++++|+
T Consensus 220 l~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 9999999976 44 46688888889988 6665777 46676654 4454 557788888888877 689999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HhCCC
Q 004733 678 IIAGLLLEREQDKPSVYVLLSNIYAAAG--------L-WEEAANIRELL-KRTGV 722 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~ 722 (733)
..++++ +.+|+++.++..|+.+|.+.| + +++|+++++++ .+..+
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 999998 889999999999999999975 2 58999999998 65543
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=6.1e-12 Score=125.47 Aligned_cols=244 Identities=10% Similarity=0.091 Sum_probs=194.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 004733 420 NIQVSNALISAYAKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNGF-PVQGLQHFSELLMSELRPDEYTLSVALS 495 (733)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 495 (733)
+...+..+...+.+.|++++|++.++.+. +.+...|+.+...+...|+ +++|+..|++.+... |+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~--------- 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PK--------- 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TT---------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CC---------
Confidence 35677888889999999999999999875 5567889999999999997 999999999998854 44
Q ss_pred HhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHH
Q 004733 496 SCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEA 572 (733)
Q Consensus 496 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 572 (733)
+...|..+..++...|++++|+..|+++.+ .+...|..+..++...|++++|
T Consensus 165 -------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 165 -------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred -------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 233445566667777888888888887763 3567888889999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCCHHHH-----HHHHHHhHhhcCCCCC-chHHHHHHHHhhhcC--ChHH
Q 004733 573 VSCFKAMQDVGRIKPDQATFTAVLSACSH-AGLVDDG-----TRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAG--YLDE 643 (733)
Q Consensus 573 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~ 643 (733)
+..|+++++.. +-+...|+.+..++.. .|..++| +..+++.++. .|+ ...|..+..++.+.| ++++
T Consensus 220 l~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 220 LQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHH
Confidence 99999999954 3346778888888888 6665777 5888888865 454 557888888888888 6899
Q ss_pred HHHHHHhcCCCCC-hhhHHHHHHHHHhhC--------C-HHHHHHHHHHH-hccCCCCchHHHHHHHHHHhc
Q 004733 644 AERVINSQHIQAR-SDNWWALFSACAAHG--------N-LRLGRIIAGLL-LEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 644 A~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 704 (733)
|.+.+.++...|+ ...+..++.++...| + +++|+.+++++ .+.+|.....|..++..+..+
T Consensus 295 a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 295 LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999888764444 446778888887764 3 58999999999 899999999999998877654
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.9e-11 Score=117.48 Aligned_cols=227 Identities=11% Similarity=-0.007 Sum_probs=165.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC-CCChhhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHhHHHHH
Q 004733 420 NIQVSNALISAYAKNERIKQAYQIFHNMS-PRNIITWNTLINGFLL----NGFPVQGLQHFSELLMSELRPDEYTLSVAL 494 (733)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 494 (733)
+...+..+...+...|++++|...|+... +.+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~-- 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL-- 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH--
Confidence 45667788889999999999999999876 3455678888888888 899999999999888765 3344433
Q ss_pred HHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHh----
Q 004733 495 SSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAK----CGDLDCSLRVFNMMIE-KDTISWNALISAYAQ---- 565 (733)
Q Consensus 495 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---- 565 (733)
+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 80 ---------------------------------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 80 ---------------------------------LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ---------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ---------------------------------HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 4444444 5666666666665543 245566667777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh----
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH----AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR---- 637 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 637 (733)
.+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+..+|..
T Consensus 127 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSS
T ss_pred ccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCC
Confidence 788888888888887754 44556666666666 78888888888888765 3 35667777778877
Q ss_pred cCChHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCch
Q 004733 638 AGYLDEAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
.+++++|...+++.....+...+..+...+.. .+++++|...++++.+.+|+++.
T Consensus 199 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 199 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888776533336667777777877 88888999999998888876544
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=9.4e-13 Score=136.92 Aligned_cols=191 Identities=8% Similarity=-0.039 Sum_probs=164.7
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDL-DCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVL 596 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll 596 (733)
+...+..+...+...|++ ++|++.|++..+ | +...|..+...|...|++++|.+.|++..+ +.|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHH
Confidence 455666777778888888 888888887752 3 467889999999999999999999999998 568888888888
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc--------CChHHHHHHHHhcC-CCC---
Q 004733 597 SACSHA---------GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA--------GYLDEAERVINSQH-IQA--- 655 (733)
Q Consensus 597 ~~~~~~---------~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~--- 655 (733)
..|... |++++|...+++..+. .+.+...+..+..+|... |++++|++.+++.. ..|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999999976 233467888999999988 99999999999876 455
Q ss_pred -ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 004733 656 -RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIREL 716 (733)
Q Consensus 656 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 716 (733)
+...+..+..++...|++++|+..++++.+.+|+++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6678899999999999999999999999999999999999999999999999999976543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.6e-11 Score=114.09 Aligned_cols=208 Identities=11% Similarity=0.003 Sum_probs=156.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004733 452 IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITL 531 (733)
Q Consensus 452 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (733)
...+..+...+...|++++|...++++.... |+ +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHHH
Confidence 3455666666666666666666666665532 22 23345566677
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHH
Q 004733 532 YAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQH-GEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVD 606 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 606 (733)
+...|++++|.+.++++.+ .+...+..+...+... |++++|...++++.+.+ ..|+ ...+..+...+...|+++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADP-TYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTST-TCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCc-CCcchHHHHHHHHHHHHHcCCHH
Confidence 7777788888777777652 3556778888888999 99999999999998843 3454 456778888899999999
Q ss_pred HHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C-C-CChhhHHHHHHHHHhhCCHHHHHHHHHHH
Q 004733 607 DGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I-Q-ARSDNWWALFSACAAHGNLRLGRIIAGLL 683 (733)
Q Consensus 607 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 683 (733)
+|...++++.+. .+.+...+..+..++.+.|++++|...++++. . + .+...+..+...+...|+.+.|...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999876 23346788889999999999999999998765 3 3 45556777777788999999999999999
Q ss_pred hccCCCCchHHHHHH
Q 004733 684 LEREQDKPSVYVLLS 698 (733)
Q Consensus 684 ~~~~p~~~~~~~~l~ 698 (733)
.+..|+++.....+.
T Consensus 209 ~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 209 QANFPYSEELQTVLT 223 (225)
T ss_dssp HHHCTTCHHHHHHHC
T ss_pred HHhCCCCHHHHHHhc
Confidence 999999988766553
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=4.6e-12 Score=116.61 Aligned_cols=166 Identities=16% Similarity=0.108 Sum_probs=146.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 004733 551 KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLS 629 (733)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~ 629 (733)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVAR---TPRYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 356678888899999999999999999999854 334677888889999999999999999999976 454 66888
Q ss_pred HHHHHhhhc-----------CChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHH
Q 004733 630 CMLDLLGRA-----------GYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVL 696 (733)
Q Consensus 630 ~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 696 (733)
.+..++... |++++|+..+++.. ..| +...+..+..++...|++++|+..++++++.+ +++.++..
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 999999999 99999999999876 445 46678888999999999999999999999999 99999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 697 LSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
++.+|...|++++|...+++..+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987643
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.6e-12 Score=133.30 Aligned_cols=271 Identities=11% Similarity=0.027 Sum_probs=123.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-H
Q 004733 420 NIQVSNALISAYAKNERIKQAYQIFHNMS---PRN----IITWNTLINGFLLNGFPVQGLQHFSELLMS----ELRPD-E 487 (733)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~ 487 (733)
....+......+...|++++|...|+... +.+ ...+..+...+...|++++|...+++.... +..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33444555666677777777777776653 222 135566666677777777777777665432 11111 2
Q ss_pred HhHHHHHHHhcccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCC--------------------HHHHH
Q 004733 488 YTLSVALSSCARISSLRHGKQIHGYVLKN----NLI-SKMSLGNAMITLYAKCGD--------------------LDCSL 542 (733)
Q Consensus 488 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~~A~ 542 (733)
..+..+...+...|++++|...++...+. +.. ....++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 23444445555555555555555544331 100 012244444445555555 55554
Q ss_pred HHHHhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCHHHHH
Q 004733 543 RVFNMMIE-----KD----TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLSACSHAGLVDDGT 609 (733)
Q Consensus 543 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~ 609 (733)
..+++..+ ++ ..++..+...+...|++++|...+++..+...-.++. .++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44444321 11 1234444444555555555555555544321001111 13444444455555555555
Q ss_pred HHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC----CCCC----hhhHHHHHHHHHhhCCHHHHH
Q 004733 610 RIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH----IQAR----SDNWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 610 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~ 677 (733)
..+++..+...-.++ ..++..+...+...|++++|...+++.. ..++ ...+..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555544432110111 2233444444555555555555444322 0111 123334444444555555555
Q ss_pred HHHHHHhccCCCC
Q 004733 678 IIAGLLLEREQDK 690 (733)
Q Consensus 678 ~~~~~~~~~~p~~ 690 (733)
..++++.+..+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544444
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=7.4e-13 Score=136.15 Aligned_cols=260 Identities=12% Similarity=0.018 Sum_probs=175.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC-H----HhHHHHHHHhcccCChHHHHHHHHHHHHc----C-CCCchhHHHH
Q 004733 458 LINGFLLNGFPVQGLQHFSELLMSELRPD-E----YTLSVALSSCARISSLRHGKQIHGYVLKN----N-LISKMSLGNA 527 (733)
Q Consensus 458 li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 527 (733)
+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...++...+. + .......+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555555555555555555542 22 1 23444555555556666666555544432 1 1123445666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 004733 528 MITLYAKCGDLDCSLRVFNMMIEK---------DTISWNALISAYAQHGE-----------------GKEAVSCFKAMQD 581 (733)
Q Consensus 528 l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~ 581 (733)
+...|...|++++|...+++..+- ...++..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 777778888888888887776421 23366777788888888 8888888887755
Q ss_pred c----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 582 V----GRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 582 ~----~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
. + -.|. ..++..+...|...|++++|...+++..+...-.++ ...+..+..+|...|++++|...+++..
T Consensus 212 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 212 LMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 1121 235777778888999999999999988765111112 2267788889999999999999888654
Q ss_pred -C---CCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------chHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 653 -I---QAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK------PSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 653 -~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
. ..+ ...+..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 111 3456778888999999999999999998875433 4478899999999999999999999887
Q ss_pred hC
Q 004733 719 RT 720 (733)
Q Consensus 719 ~~ 720 (733)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=3.8e-09 Score=112.61 Aligned_cols=217 Identities=7% Similarity=-0.046 Sum_probs=148.1
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 004733 471 GLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGK-QIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI 549 (733)
Q Consensus 471 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 549 (733)
+..+|++.+..- .-....|.....-+...|+.++|. .+++..... .+.+...+-..+....+.|+++.|.++|+.+.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455554432 234455555555555556666664 666666542 23344555566666666777777777777664
Q ss_pred C-------------C------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHhc-c
Q 004733 550 E-------------K------------DTISWNALISAYAQHGEGKEAVSCFKAMQDV-GRIKPDQATFTAVLSACSH-A 602 (733)
Q Consensus 550 ~-------------~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~-~ 602 (733)
+ | ....|...+....+.|+.+.|..+|+++++. + .+....|...+..-.+ .
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhC
Confidence 2 2 1235777788888889999999999999885 3 2223344333222223 3
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC----ChhhHHHHHHHHHhhCCHHHHH
Q 004733 603 GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA----RSDNWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~ 677 (733)
++.+.|..+|+..++. ++-+...+..+++.....|+.+.|..+|++.. ..| ....|..++..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5589999999999987 33455677788888889999999999999876 333 2346788888888999999999
Q ss_pred HHHHHHhccCCCCchH
Q 004733 678 IIAGLLLEREQDKPSV 693 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~ 693 (733)
.+.+++.+..|+++.+
T Consensus 562 ~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHhCCCCcHH
Confidence 9999999999998654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=1.9e-12 Score=128.96 Aligned_cols=258 Identities=12% Similarity=0.050 Sum_probs=170.5
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCC-----HHhHHHHHHHhcccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHH
Q 004733 461 GFLLNGFPVQGLQHFSELLMSELRPD-----EYTLSVALSSCARISSLRHGKQIHGYVLKN----NLI-SKMSLGNAMIT 530 (733)
Q Consensus 461 ~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 530 (733)
.+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++...+. +.. ....++..+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3444444444544444444432 21 123334444444455555555544443321 111 12445566777
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 004733 531 LYAKCGDLDCSLRVFNMMIE-----KD----TISWNALISAYAQHGE--------------------GKEAVSCFKAMQD 581 (733)
Q Consensus 531 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~ 581 (733)
.+...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77788888888887777642 22 2366777788888888 8888888887754
Q ss_pred c----CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 582 V----GRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 582 ~----~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
. + -.|. ...+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|...+++..
T Consensus 172 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 172 LVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 1 1111 235777777888999999999999988754111122 2267788888999999999999888654
Q ss_pred ----CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------chHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 653 ----IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK------PSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 653 ----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
..++ ...+..+...+...|++++|...++++.+..|.. ..++..++.+|...|++++|..++++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1122 3356677888999999999999999998875443 4478899999999999999999999988
Q ss_pred hCC
Q 004733 719 RTG 721 (733)
Q Consensus 719 ~~~ 721 (733)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 754
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=7.4e-12 Score=112.28 Aligned_cols=167 Identities=15% Similarity=0.023 Sum_probs=121.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 34455556666667777777776666532 234455666666666777777777777776654 22345566666777
Q ss_pred hhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 635 LGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|+++.++..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776654 344556677788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcCC
Q 004733 713 IRELLKRTGVIKQ 725 (733)
Q Consensus 713 ~~~~~~~~~~~~~ 725 (733)
++++..+......
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 9999887654433
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=131.37 Aligned_cols=267 Identities=12% Similarity=0.027 Sum_probs=186.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHhHHHHHHHhcccCChHHHHHHHHHHHHc----CCCC-ch
Q 004733 452 IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPD----EYTLSVALSSCARISSLRHGKQIHGYVLKN----NLIS-KM 522 (733)
Q Consensus 452 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 522 (733)
...+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...++..... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445566677888888888888888887763 122 245667777888888888888887766532 2222 24
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 004733 523 SLGNAMITLYAKCGDLDCSLRVFNMMIE-----KD----TISWNALISAYAQHGE--------------------GKEAV 573 (733)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 573 (733)
.++..+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5667777888888888888888887652 22 3367777778888888 88888
Q ss_pred HHHHHHHHcCC---CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHH
Q 004733 574 SCFKAMQDVGR---IKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAE 645 (733)
Q Consensus 574 ~~~~~~~~~~~---~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~ 645 (733)
..+++..+... -.|. ..++..+...|...|++++|...+++..+...-.++ ...+..+..++...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 88877654210 1122 235777777888888888888888887754222222 226777888888888888888
Q ss_pred HHHHhcC----CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------chHHHHHHHHHHhcCChHHHH
Q 004733 646 RVINSQH----IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK------PSVYVLLSNIYAAAGLWEEAA 711 (733)
Q Consensus 646 ~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 711 (733)
..+++.. ..++ ...+..+...+...|++++|...++++.+..+.. +.++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8887644 1111 3355677777888888888888888888865433 557778888888888888888
Q ss_pred HHHHHHHh
Q 004733 712 NIRELLKR 719 (733)
Q Consensus 712 ~~~~~~~~ 719 (733)
+++++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=2.2e-11 Score=109.03 Aligned_cols=168 Identities=13% Similarity=0.062 Sum_probs=143.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLS 597 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~ 597 (733)
+..+|..+...|.+.|++++|.+.|++..+ .++..|..+..++.+.|++++|...+++..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHHH
Confidence 456788899999999999999999998863 356788899999999999999999999998854 344566777778
Q ss_pred HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHH
Q 004733 598 ACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 598 ~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 675 (733)
.+...++++.|...+++..+. .+.+...+..+..++.+.|++++|++.+++.. .+.+...+..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999999876 33446788899999999999999999999866 44456688899999999999999
Q ss_pred HHHHHHHHhccCCCCch
Q 004733 676 GRIIAGLLLEREQDKPS 692 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~ 692 (733)
|+..++++++.+|+++.
T Consensus 160 A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhCCccCHH
Confidence 99999999999997643
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.5e-11 Score=132.78 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSC 630 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 630 (733)
...|+.|...+.+.|++++|++.|++.++ +.|+ ..+|..+..+|.+.|++++|++.|++.++. .|+ ...+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 45788899999999999999999999998 4565 567888999999999999999999999876 555 668899
Q ss_pred HHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChH
Q 004733 631 MLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 708 (733)
+..+|.+.|++++|++.+++.. ..| +...+..+..++...|++++|+..++++++++|+++.++..|+.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998866 444 46688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 004733 709 EAANIRELLKR 719 (733)
Q Consensus 709 ~A~~~~~~~~~ 719 (733)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.3e-11 Score=125.27 Aligned_cols=226 Identities=9% Similarity=-0.015 Sum_probs=170.3
Q ss_pred HHHHhcccCChHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhhHH
Q 004733 493 ALSSCARISSLRHGKQIHGYVLKN----NLIS-KMSLGNAMITLYAKCGDLDCSLRVFNMMIE-----KD-----TISWN 557 (733)
Q Consensus 493 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~ 557 (733)
....+...|++++|...++...+. +-.+ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444567788999999988888763 1111 346778888999999999999998887752 12 24678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCC-CchHHH
Q 004733 558 ALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLSACSHAGLVDDGTRIFDSMVNDY---GFIP-AEDHLS 629 (733)
Q Consensus 558 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~p-~~~~~~ 629 (733)
.+...|...|++++|+..+++..+...-.++. .++..+...|...|++++|...+++..+.. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 88899999999999999999987632011222 367888889999999999999999988621 1213 255788
Q ss_pred HHHHHhhhcCChHHHHHHHHhcC------CCCChh-hHHHHHHHHHhhCC---HHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 630 CMLDLLGRAGYLDEAERVINSQH------IQARSD-NWWALFSACAAHGN---LRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~-~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
.+..++.+.|++++|...+++.. ..|... .+..+...+...|+ +++|...+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998754 122222 24556666778888 78888888776 344556678889999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 004733 700 IYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~~~~ 719 (733)
+|...|++++|..++++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=2.4e-10 Score=111.69 Aligned_cols=185 Identities=9% Similarity=0.061 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 504 RHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTI-SWNALISAYAQHGEGKEAVSCFKAM 579 (733)
Q Consensus 504 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 579 (733)
++|..+++...+.-.+.+...|..++..+.+.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555422222344566666666677777777777776653 2 233 5677777777777777777777777
Q ss_pred HHcCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCC----C
Q 004733 580 QDVGRIKPDQATFTAVLSAC-SHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHI----Q 654 (733)
Q Consensus 580 ~~~~~~~p~~~~~~~ll~~~-~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 654 (733)
.+.. +++...|....... ...|++++|..+|++..+. .+-+...+..++..+.+.|++++|..+|++... +
T Consensus 161 ~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 7643 22333343332221 2357777777777777765 122455667777777777777777777776542 3
Q ss_pred CC--hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 655 AR--SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 655 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
|+ ...|..++......|+.+.|..+++++.+..|+++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 32 335666677777777777777777777777776553
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=124.73 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=133.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 004733 452 IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITL 531 (733)
Q Consensus 452 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (733)
..++..+...+...|++++|..+++++.+.... ......+.....+..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK----------------------------TSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------------HcCCCCHHHHHHHHHHHHH
Confidence 346777777888888888888888877652000 0000011112233444445
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCC-HHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIE-------K----DTISWNALISAYAQHGEGKEAVSCFKAMQDV------GRIKPD-QATFT 593 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~p~-~~~~~ 593 (733)
+...|++++|...+++..+ + ....+..+...+...|++++|...++++.+. + -.|+ ...+.
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 157 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQLN 157 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 5555555555555554431 1 1234555666666777777777777766653 1 1222 23455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhc-----CCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC----------CCCCh
Q 004733 594 AVLSACSHAGLVDDGTRIFDSMVNDY-----GFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH----------IQARS 657 (733)
Q Consensus 594 ~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~ 657 (733)
.+...+...|++++|.++++++.+.. +..|. ...+..+..++...|++++|.+.++++. ..+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 66667777777777777777765431 00121 3355666777777777777777766543 11111
Q ss_pred h-------hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 658 D-------NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 658 ~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
. .+......+...+.+.+|...++.+....|..+.++..++.+|...|++++|.+++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 12222333445666777778888888888888999999999999999999999999988764
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.9e-10 Score=112.48 Aligned_cols=213 Identities=9% Similarity=0.002 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChhhHHHHHHHHHhc
Q 004733 505 HGKQIHGYVLKNNLISKMSLGNAMITLYA-------KCGDL-------DCSLRVFNMMIE---K-DTISWNALISAYAQH 566 (733)
Q Consensus 505 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 566 (733)
+|..+|+...... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+.
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3444444444321 223444555554443 35775 899999998764 3 455889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhh-hcCChHH
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQ-A-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLG-RAGYLDE 643 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~-~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 643 (733)
|++++|..+|+++.+ +.|+. . .|..+...+.+.|++++|..+|++..+. . +++...|...+.... ..|++++
T Consensus 113 ~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred CCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 55653 3 7888999999999999999999999865 2 233445544333322 3799999
Q ss_pred HHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc---CCC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 644 AERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLER---EQD-KPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 644 A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
|..+|++.. .+.++..|..++..+...|++++|+.+++++++. .|+ ...+|..++..+...|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999865 3445678889999999999999999999999996 443 6678999999999999999999999999
Q ss_pred HhCCCc
Q 004733 718 KRTGVI 723 (733)
Q Consensus 718 ~~~~~~ 723 (733)
.+..+.
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 886654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=3.4e-11 Score=125.16 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=157.1
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 004733 537 DLDCSLRVFNMMIE---KDTISWNALISAYAQHGEG-KEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIF 612 (733)
Q Consensus 537 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 612 (733)
+++++...++.... .+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665542 3567888899999999999 99999999999954 334678999999999999999999999
Q ss_pred HHhHhhcCCCCCchHHHHHHHHhhhc---------CChHHHHHHHHhcC--CCCChhhHHHHHHHHHhh--------CCH
Q 004733 613 DSMVNDYGFIPAEDHLSCMLDLLGRA---------GYLDEAERVINSQH--IQARSDNWWALFSACAAH--------GNL 673 (733)
Q Consensus 613 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~ 673 (733)
++..+. .|+...+..+..+|... |++++|++.+++.. .+.+...|..+..++... |++
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999955 68878899999999999 99999999999866 444567888899999888 999
Q ss_pred HHHHHHHHHHhccCC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 674 RLGRIIAGLLLEREQ---DKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
++|+..++++.+.+| +++.++..++.+|...|++++|++.|++..+..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999 9999999999999999999999999999987643
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=5.8e-11 Score=110.51 Aligned_cols=188 Identities=9% Similarity=0.023 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE----KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVL 596 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll 596 (733)
+..+......+...|++++|...|++..+ ++...+..+..++...|++++|++.|++..+ ..|+ ...+..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHH
Confidence 34445555555555666666665555431 3444444455555555666666666665555 2343 23455555
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCC-c-------hHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC---hhhHHHHH
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPA-E-------DHLSCMLDLLGRAGYLDEAERVINSQH-IQAR---SDNWWALF 664 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~ 664 (733)
..|...|++++|...+++..+. .|+ . ..+..+...+...|++++|++.+++.. ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555556666666666555544 222 2 234444455555555555555555443 3333 22333333
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 665 SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
.++... +...++++....+.++..+..+ .....|.+++|+.++++..+..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC
Confidence 333322 2233344444444443333222 23334445999999999988654
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=2.5e-11 Score=124.61 Aligned_cols=265 Identities=11% Similarity=0.049 Sum_probs=201.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC---CCCh----hhHHHHHHHHHhCCCchHHHHHHHHHHHC----CC-CCCHHhHHH
Q 004733 425 NALISAYAKNERIKQAYQIFHNMS---PRNI----ITWNTLINGFLLNGFPVQGLQHFSELLMS----EL-RPDEYTLSV 492 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~~ 492 (733)
..+...+...|++++|...|+... +.+. ..+..+...|...|++++|+..+++.... +. ......+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 456677889999999999998875 2333 46788888899999999999999887653 11 123456777
Q ss_pred HHHHhcccCChHHHHHHHHHHHHc----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC
Q 004733 493 ALSSCARISSLRHGKQIHGYVLKN----N-LISKMSLGNAMITLYAKCGD-----------------LDCSLRVFNMMIE 550 (733)
Q Consensus 493 ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~ 550 (733)
+...+...|++++|...++...+. + ......++..+...|...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 788888999999999998877653 2 12235577788889999999 9999998887642
Q ss_pred -----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 004733 551 -----K----DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD----QATFTAVLSACSHAGLVDDGTRIFDSMVN 617 (733)
Q Consensus 551 -----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 617 (733)
. ....+..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 1236778888999999999999999998773200112 12677888899999999999999999876
Q ss_pred hcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC-C---CCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 618 DYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH-I---QAR----SDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 618 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
...-..+ ...+..+..++...|++++|...+++.. . .++ ...+..+...+...|++++|...++++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5211111 4567888999999999999999998755 1 111 23567788889999999999999999999
Q ss_pred cCCC
Q 004733 686 REQD 689 (733)
Q Consensus 686 ~~p~ 689 (733)
+.+.
T Consensus 372 ~~~~ 375 (411)
T 4a1s_A 372 LAXX 375 (411)
T ss_dssp HCCH
T ss_pred HHhh
Confidence 8764
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.29 E-value=1.7e-08 Score=107.69 Aligned_cols=217 Identities=6% Similarity=-0.050 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 505 HGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSL-RVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQ 580 (733)
Q Consensus 505 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 580 (733)
.+..+|++.... .+....+|-..+..+...|+.++|. ++|++... | +...|-..+...-+.|++++|.++|++++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345567766654 2346777777888888889998896 99988763 3 45567778888889999999999999998
Q ss_pred HcCC--------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC-
Q 004733 581 DVGR--------IKPD------------QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG- 639 (733)
Q Consensus 581 ~~~~--------~~p~------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 639 (733)
+... -.|+ ...|...+....+.|..+.|..+|+++.+. ...+....|...+..-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCC
Confidence 6310 0142 235777777778889999999999999865 11223445544444444444
Q ss_pred ChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC---CchHHHHHHHHHHhcCChHHHHHHH
Q 004733 640 YLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD---KPSVYVLLSNIYAAAGLWEEAANIR 714 (733)
Q Consensus 640 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 714 (733)
+.+.|.++|+... .+.++..|..++......|+.+.|..++++++...|+ ...+|..+...-...|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5899999998765 3445667778888888899999999999999998884 4456777777777889999999999
Q ss_pred HHHHhCCCc
Q 004733 715 ELLKRTGVI 723 (733)
Q Consensus 715 ~~~~~~~~~ 723 (733)
+++.+.-+.
T Consensus 565 ~R~~~~~P~ 573 (679)
T 4e6h_A 565 KRFFEKFPE 573 (679)
T ss_dssp HHHHHHSTT
T ss_pred HHHHHhCCC
Confidence 999887654
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=2.5e-10 Score=106.13 Aligned_cols=204 Identities=9% Similarity=0.040 Sum_probs=160.8
Q ss_pred CCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHH
Q 004733 485 PDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNALIS 561 (733)
Q Consensus 485 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 561 (733)
.|+..+......+...|++++|...++...+...+++...+..+..++...|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888889999999999999999999887656667777799999999999999999999864 3 4557888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHH
Q 004733 562 AYAQHGEGKEAVSCFKAMQDVGRIKPD-Q-------ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA---EDHLSC 630 (733)
Q Consensus 562 ~~~~~~~~~~A~~~~~~~~~~~~~~p~-~-------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~ 630 (733)
.+...|++++|+..+++..+.. |+ . ..|..+...+...|++++|.+.++++.+. .|+ ...+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~ 158 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYS 158 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHH
Confidence 9999999999999999999954 54 4 34777778889999999999999999854 665 457777
Q ss_pred HHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 004733 631 MLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIY 701 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 701 (733)
+..++...|+. .++++. ...+...+.... ....+.+++|+..++++.+++|+++.+...++.+.
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88888766543 233322 122333333322 34567799999999999999999999988887764
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=5.9e-11 Score=117.98 Aligned_cols=265 Identities=11% Similarity=0.051 Sum_probs=196.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC---CCC----hhhHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHhHHH
Q 004733 425 NALISAYAKNERIKQAYQIFHNMS---PRN----IITWNTLINGFLLNGFPVQGLQHFSELLMS----ELRP-DEYTLSV 492 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ 492 (733)
......+...|++++|...|+... +.+ ...+..+...+...|++++|...+++.... +..| ....+..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 345667888999999999998864 233 256778888899999999999999886543 1112 2456677
Q ss_pred HHHHhcccCChHHHHHHHHHHHHc----CCC-CchhHHHHHHHHHHhcCC--------------------HHHHHHHHHh
Q 004733 493 ALSSCARISSLRHGKQIHGYVLKN----NLI-SKMSLGNAMITLYAKCGD--------------------LDCSLRVFNM 547 (733)
Q Consensus 493 ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 547 (733)
+...+...|++++|...++...+. +-. ....++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 788888999999999988876642 111 113477788888999999 9999988887
Q ss_pred cCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 004733 548 MIE-----KD----TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD----QATFTAVLSACSHAGLVDDGTRIFDS 614 (733)
Q Consensus 548 ~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~ 614 (733)
..+ ++ ...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 642 12 336777888899999999999999998763200112 23677788899999999999999999
Q ss_pred hHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC-C---CCC----hhhHHHHHHHHHhhCCHHHHHHHHHH
Q 004733 615 MVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH-I---QAR----SDNWWALFSACAAHGNLRLGRIIAGL 682 (733)
Q Consensus 615 ~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 682 (733)
..+...-.++ ...+..+..++...|++++|...+++.. . .++ ...+..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 8765211222 4467788999999999999999998754 1 111 23567788889999999999999999
Q ss_pred HhccCCC
Q 004733 683 LLEREQD 689 (733)
Q Consensus 683 ~~~~~p~ 689 (733)
+.+..+.
T Consensus 329 a~~~~~~ 335 (338)
T 3ro2_A 329 HLEISRE 335 (338)
T ss_dssp HHHC---
T ss_pred HHHHHHh
Confidence 9988764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=2.3e-09 Score=108.19 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C--CHHH
Q 004733 527 AMITLYAKCGDLDCSLRVFNMMIE----------K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIK--P--DQAT 591 (733)
Q Consensus 527 ~l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--p--~~~~ 591 (733)
.+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+.. -. + ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHHH
Confidence 344444555555555555544421 0 01123344455555566666666665555422 10 0 1123
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH-----HHHHHhhhcCChHHHHHHHHhcC-CCCC-----hhhH
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLS-----CMLDLLGRAGYLDEAERVINSQH-IQAR-----SDNW 660 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~ 660 (733)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44455555555666666666655543311111111111 12233445566666666655544 1111 1123
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCC------chHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDK------PSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
..+...+...|++++|...++++.+..+.. ...+..++.++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555666666666666555533211 1244555556666666666666655544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1.7e-10 Score=116.69 Aligned_cols=301 Identities=10% Similarity=0.002 Sum_probs=199.7
Q ss_pred ccchhHHHHHHHHH--HhcCCHHHHHHHHhhcC--------CCChhhHHHHHHH--HHhCCCchHHH---------HHHH
Q 004733 418 ITNIQVSNALISAY--AKNERIKQAYQIFHNMS--------PRNIITWNTLING--FLLNGFPVQGL---------QHFS 476 (733)
Q Consensus 418 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~--~~~~~~~~~a~---------~~~~ 476 (733)
.|+..+-+.+-+.| .+.+++++|..+++++. ..++..|-.++.. ....+...... +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34455556666666 78889999988887653 1223333333332 11112222222 5555
Q ss_pred HHHHCCCCCCH--H--hHHHHHHHhcccCChHHHHHHHHHHHHcCC-CC----chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004733 477 ELLMSELRPDE--Y--TLSVALSSCARISSLRHGKQIHGYVLKNNL-IS----KMSLGNAMITLYAKCGDLDCSLRVFNM 547 (733)
Q Consensus 477 ~m~~~~~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 547 (733)
.+.......+. . .+......+...|++++|...++...+... .+ ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54432111111 1 112233345678999999999998875321 11 245777888899999999999988887
Q ss_pred cCC-----CC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 004733 548 MIE-----KD-----TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD----QATFTAVLSACSHAGLVDDGTRIFD 613 (733)
Q Consensus 548 ~~~-----~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~ 613 (733)
..+ ++ ..+++.+...|...|++++|.+.|++..+...-.++ ..++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 652 22 336778889999999999999999998763100122 2457778889999999999999999
Q ss_pred HhHhhc---CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC----C--CCChh-hHHHHHHHHHhhCC---HHHHHHHH
Q 004733 614 SMVNDY---GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH----I--QARSD-NWWALFSACAAHGN---LRLGRIIA 680 (733)
Q Consensus 614 ~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~~~-~~~~l~~~~~~~g~---~~~A~~~~ 680 (733)
+..+.. +.+....++..+..++.+.|++++|...+++.. . .|... .+..+...+...|+ +.+|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 998721 122225578889999999999999999998754 1 22222 34444455667777 77788777
Q ss_pred HHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 681 GLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 681 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
++. ...|.....+..++.+|...|++++|..++++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 762 23355566788999999999999999999998765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=4.2e-10 Score=100.65 Aligned_cols=167 Identities=11% Similarity=-0.061 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004733 523 SLGNAMITLYAKCGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSAC 599 (733)
Q Consensus 523 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 599 (733)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 3456677888899999999999999874 356678888999999999999999999999854 44567788888999
Q ss_pred hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHH
Q 004733 600 SHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 600 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 677 (733)
...|++++|.+.++++.+. .+.+...+..+..++...|++++|...++++. .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999876 34456788889999999999999999998866 4445678888999999999999999
Q ss_pred HHHHHHhccCCCCchH
Q 004733 678 IIAGLLLEREQDKPSV 693 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~ 693 (733)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887654
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=3.2e-10 Score=114.99 Aligned_cols=228 Identities=10% Similarity=-0.003 Sum_probs=156.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCC-CCCC----HHhHHHHHHHhcccCChHHHHHHHHHHHHc--CC----CCchhHHHHH
Q 004733 460 NGFLLNGFPVQGLQHFSELLMSE-LRPD----EYTLSVALSSCARISSLRHGKQIHGYVLKN--NL----ISKMSLGNAM 528 (733)
Q Consensus 460 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~~l 528 (733)
..+...|++++|...+++....- -.++ ...+..+...+...|+++.|...++...+. .. .....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34445555555555555554421 0111 234444555555556666666555554431 11 1123456777
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCC-HHHHHH
Q 004733 529 ITLYAKCGDLDCSLRVFNMMIE-----KDT----ISWNALISAYAQHGEGKEAVSCFKAMQDV----GRIKPD-QATFTA 594 (733)
Q Consensus 529 ~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~p~-~~~~~~ 594 (733)
...|...|++++|...|++..+ ++. .++..+...|...|++++|++.+++..+. + ..|+ ..++..
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~ 269 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cchhHHHHHHH
Confidence 8888899999999998887752 221 36788899999999999999999998772 2 2243 456888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHhhhcCC---hHHHHHHHHhcCCCCCh-hhHHHHHHHH
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYGFIPA---EDHLSCMLDLLGRAGY---LDEAERVINSQHIQARS-DNWWALFSAC 667 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~~~ 667 (733)
+...|...|++++|...+++..+...-..+ ...+..+...+...|+ +++|+.++++....|+. ..+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888999999999999999998764211112 2235678888999999 89999999987644443 3567788889
Q ss_pred HhhCCHHHHHHHHHHHhccCC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p 688 (733)
...|++++|...++++.+...
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988543
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=2.9e-11 Score=118.80 Aligned_cols=241 Identities=11% Similarity=0.087 Sum_probs=150.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CC---hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 004733 420 NIQVSNALISAYAKNERIKQAYQIFHNMSP--------RN---IITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEY 488 (733)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 488 (733)
...++..+...+...|++++|...++.+.. .+ ...+..+...|...|++++|...+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 456778899999999999999999987642 12 2467777788888888888888888776531
Q ss_pred hHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHH
Q 004733 489 TLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE-------K----DTISWN 557 (733)
Q Consensus 489 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~ 557 (733)
........+.....+..+...+...|++++|...+++..+ + ....+.
T Consensus 100 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 100 ----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 0000000011223344555556666666666666655431 1 223567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc------CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc------CCCCC
Q 004733 558 ALISAYAQHGEGKEAVSCFKAMQDV------GRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDY------GFIPA 624 (733)
Q Consensus 558 ~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~p~ 624 (733)
.+...+...|++++|+++++++.+. + ..|+ ..++..+...|...|++++|...++++.+.. ...+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGP-DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT-TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 7788888889999999998888764 2 1333 2457778888899999999999999887531 11122
Q ss_pred ch-H------HHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 625 ED-H------LSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 625 ~~-~------~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
.. . +..+...+...+.+.+|...+.... ..|+ ...+..+..+|...|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1 2222333445556666666666655 2333 446788889999999999999999999998775
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=1.5e-09 Score=100.36 Aligned_cols=181 Identities=11% Similarity=0.059 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHH
Q 004733 524 LGNAMITLYAKCGDLDCSLRVFNMMIE--KD----TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA----TFT 593 (733)
Q Consensus 524 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~ 593 (733)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+.. |+.. .+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---P~~~~~~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCCcHHHHHH
Confidence 344455667777777777777777653 32 1345666777777777777777777777743 4421 333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHhhcCCCCCch-HHHHHHHHhhhcCChHHHHHHHHhcCCC
Q 004733 594 AVLSACSH------------------AGLVDDGTRIFDSMVNDYGFIPAED-HLSCMLDLLGRAGYLDEAERVINSQHIQ 654 (733)
Q Consensus 594 ~ll~~~~~------------------~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (733)
.+..++.. .|++++|...|+++++. .|+.. ........ +......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33444432 35566666666666644 33322 11111000 0000000
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCC
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP---SVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQ 725 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 725 (733)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...++...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 00113456678899999999999999999999987 5699999999999999999999999998766443
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4e-09 Score=99.19 Aligned_cols=246 Identities=12% Similarity=0.013 Sum_probs=137.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHH
Q 004733 428 ISAYAKNERIKQAYQIFHNMSPRNII-TWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHG 506 (733)
Q Consensus 428 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 506 (733)
++-..-.|++..++.-...+.+.+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34555678888888866666533322 223344677777776631 11234433343333333 211 4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 507 KQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK-----DTISWNALISAYAQHGEGKEAVSCFKAMQD 581 (733)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 581 (733)
...++.....+ .++......+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555443 333444456666677777777777777766432 233455566677777777777777777766
Q ss_pred cCCCCC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 582 VGRIKP-----DQATFTAVLSA--CSHAG--LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 582 ~~~~~p-----~~~~~~~ll~~--~~~~~--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
..| +..+...+..+ ....| ++++|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445 24444455544 22223 677777777776544 3442233333336677777777777766533
Q ss_pred C-----------CC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHH
Q 004733 653 I-----------QA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVL 696 (733)
Q Consensus 653 ~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 696 (733)
. .| ++.+...++......|+ .|.++++++.+..|++|.+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 13 33344355555555565 6677777777777777665443
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=4.3e-09 Score=106.33 Aligned_cols=228 Identities=9% Similarity=0.052 Sum_probs=154.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHHhHHHHHHH
Q 004733 427 LISAYAKNERIKQAYQIFHNMSP-----RN----IITWNTLINGFLLNGFPVQGLQHFSELLMSEL-RPDEYTLSVALSS 496 (733)
Q Consensus 427 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~ 496 (733)
....+...|++++|...|+.... ++ ..++..+...|...|+++.|+..+.+..+... .++..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-------- 178 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS-------- 178 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH--------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch--------
Confidence 34456677888888888876531 22 23566667777777777777777776554210 01100
Q ss_pred hcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcC
Q 004733 497 CARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE-----KD----TISWNALISAYAQHG 567 (733)
Q Consensus 497 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~ 567 (733)
.....+++.+...|...|++++|.+.|++..+ ++ ..++..+...|...|
T Consensus 179 ----------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 179 ----------------------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00123445666777777777777777766542 12 235677888888999
Q ss_pred ChHHHHHHHHHHHH-----cCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHhhhcC
Q 004733 568 EGKEAVSCFKAMQD-----VGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA---EDHLSCMLDLLGRAG 639 (733)
Q Consensus 568 ~~~~A~~~~~~~~~-----~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 639 (733)
++++|++.+++..+ .. +....++..+...|.+.|++++|...+++..+...-.++ ...+..+...+...|
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 99999999998876 32 222456778888999999999999999998876222222 234566667777888
Q ss_pred C---hHHHHHHHHhcCCCCCh-hhHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 640 Y---LDEAERVINSQHIQARS-DNWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 640 ~---~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
+ +++|+.++++....|+. ..+..+...|...|++++|...++++.+.
T Consensus 315 ~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8 88899988886544433 35567788899999999999999988764
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=1.5e-09 Score=103.31 Aligned_cols=183 Identities=11% Similarity=0.052 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHH
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-D---TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTA 594 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ 594 (733)
...+-.....+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|+..|++..+...-.|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444455555566666666666666542 2 1 234455555666666666666666666653200111 223444
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHH
Q 004733 595 VLSACSH--------AGLVDDGTRIFDSMVNDYGFIPAE-DHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFS 665 (733)
Q Consensus 595 ll~~~~~--------~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 665 (733)
+..++.. .|++++|...|+++.+. .|+. .....+.......++ + ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~-------~--------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAK-------L--------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHH-------H--------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHH-------H--------HHHHHHHHH
Confidence 4445555 56666666666666554 2221 111111100000000 0 011345667
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCC---chHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCC
Q 004733 666 ACAAHGNLRLGRIIAGLLLEREQDK---PSVYVLLSNIYAAA----------GLWEEAANIRELLKRTGV 722 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 722 (733)
.+...|++++|+..++++++..|++ +.++..++.+|... |++++|...++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888899999999999999988884 45788888888876 888999999988887543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=3e-10 Score=109.65 Aligned_cols=199 Identities=15% Similarity=0.204 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE-------K----DTISWNALISAYAQHGEGKEAVSCFKAMQDV-----GRI 585 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~ 585 (733)
..++..+...+...|++++|...+++..+ + ...++..+...+...|++++|.+.++++.+. +.-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44556666677777777777777666541 1 1335667777778888888888888777653 101
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc----C-CCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC------
Q 004733 586 KPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDY----G-FIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH------ 652 (733)
Q Consensus 586 ~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------ 652 (733)
.|+ ..++..+...|...|++++|...++++.+.. + ..|. ...+..+..++.+.|++++|...++++.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122 3456677777888888888888888776541 1 0222 3466777788888888888888877543
Q ss_pred ----CCCChh-hHHHHHHHHHhhC------CHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 653 ----IQARSD-NWWALFSACAAHG------NLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 653 ----~~~~~~-~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
..+... .+..+.......+ .+..+...++......|..+.++..++.+|...|++++|..++++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122222 2333332333222 2344444444444455666778999999999999999999999988753
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=5.3e-09 Score=98.42 Aligned_cols=241 Identities=12% Similarity=0.081 Sum_probs=167.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 004733 459 INGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDL 538 (733)
Q Consensus 459 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 538 (733)
++-..-.|++..++.-..++ .............+++...|+.... ..-.|....+..+..- ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 34455678888877733332 1122223344455777777765532 1122333233333333 3322
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 004733 539 DCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKP-DQATFTAVLSACSHAGLVDDGTRIFDS 614 (733)
Q Consensus 539 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~ 614 (733)
|...|++..+ ++..++..+..++...|++++|++++.+.+..+ -.+ +...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-EAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777887663 455566678888999999999999999998765 112 345678888899999999999999999
Q ss_pred hHhhcCCCC-----CchHHHHHHHH--hhh--cCChHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 004733 615 MVNDYGFIP-----AEDHLSCMLDL--LGR--AGYLDEAERVINSQH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLL 684 (733)
Q Consensus 615 ~~~~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 684 (733)
|.+. .| +..+...++.+ ... .+++++|..+|+++. ..|+......++.++...|++++|+..++.+.
T Consensus 162 ~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9865 66 34555556555 333 348999999999987 44543344445558899999999999999888
Q ss_pred cc----------CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 685 ER----------EQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 685 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+. +|+++.++..++.+....|+ +|.++++++++..+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 76 48899999888888888897 89999999998653
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=2.4e-09 Score=89.77 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=86.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAA 669 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 669 (733)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|...++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555543 12233444555555555555666555555443 23334456667777888
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.|++++|...++++.+..|+++..+..++.+|...|++++|..+++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888889888889999999999999999999999887654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=1.9e-10 Score=98.38 Aligned_cols=141 Identities=9% Similarity=-0.032 Sum_probs=102.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhh
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGR 637 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 637 (733)
...+...|++++|+..+++... ..|+. ..+..+...|.+.|++++|++.|++.++. .| +...+..+..+|.+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 3444556777788877777755 33443 34556677778888888888888888765 34 45677778888888
Q ss_pred cCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHH-HHHHHHhccCCCCchHHHHHHHHHHhcCC
Q 004733 638 AGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGR-IIAGLLLEREQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 706 (733)
.|++++|+..+++.. ..| ++..+..+...+...|++++|. ..++++.+++|+++.++...+.++...|+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888887755 344 4567788888888888887655 45689999999999999999998888886
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=3.3e-09 Score=102.12 Aligned_cols=176 Identities=7% Similarity=-0.073 Sum_probs=140.9
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 004733 539 DCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 539 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 618 (733)
+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 344455555554455567778888899999999999999999854 334567888888999999999999999999865
Q ss_pred cCCCCCchHHH-HHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--chH
Q 004733 619 YGFIPAEDHLS-CMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK--PSV 693 (733)
Q Consensus 619 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 693 (733)
.|+..... .....+...++.++|...+++.. .+.+...+..+...+...|++++|+..++++++.+|++ +.+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 55544332 23334667788888988888765 44456788899999999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 694 YVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+..|+.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887653
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.3e-09 Score=105.35 Aligned_cols=202 Identities=8% Similarity=-0.034 Sum_probs=144.9
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 004733 502 SLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIE-----KD----TISWNALISAYAQHGEGKEA 572 (733)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A 572 (733)
++++|...++.. ...|...|++++|...|.+..+ .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776654 4567788999999988887642 12 35788899999999999999
Q ss_pred HHHHHHHHHcCCC--CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHH
Q 004733 573 VSCFKAMQDVGRI--KPD--QATFTAVLSACSHA-GLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDE 643 (733)
Q Consensus 573 ~~~~~~~~~~~~~--~p~--~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 643 (733)
+..+++..+...- .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999998763200 111 24678888899886 9999999999999865211111 3467888999999999999
Q ss_pred HHHHHHhcC-CCCChh--------hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH-----HHHHHHHHH--hcCCh
Q 004733 644 AERVINSQH-IQARSD--------NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV-----YVLLSNIYA--AAGLW 707 (733)
Q Consensus 644 A~~~~~~~~-~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 707 (733)
|+..+++.. ..|+.. .+..+..++...|+++.|+..++++.+++|+.+.. +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998765 333321 45667778889999999999999999999986653 344556554 45778
Q ss_pred HHHHHHHHHHH
Q 004733 708 EEAANIRELLK 718 (733)
Q Consensus 708 ~~A~~~~~~~~ 718 (733)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888886544
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=2e-09 Score=116.32 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVL 596 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll 596 (733)
+...++.+...+.+.|++++|++.|++..+ | +...|..+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 356678888999999999999999998863 3 5678889999999999999999999999984 465 56788999
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCH
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-SDNWWALFSACAAHGNL 673 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~ 673 (733)
.+|...|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|++.+++.. ..|+ ...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999876 454 6688999999999999999999998866 4554 56788899999999999
Q ss_pred HHHHHHHHHHhccCCC
Q 004733 674 RLGRIIAGLLLEREQD 689 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p~ 689 (733)
++|.+.++++.++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999998886543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=5.1e-09 Score=99.55 Aligned_cols=205 Identities=11% Similarity=0.029 Sum_probs=143.8
Q ss_pred CCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhH
Q 004733 485 PDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS--KMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KD----TISW 556 (733)
Q Consensus 485 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~ 556 (733)
.+...+-.....+...|++++|...++.+.+..... ....+..+..++.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345667777888899999999999999998764322 156777888999999999999999999873 32 2356
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH
Q 004733 557 NALISAYAQ--------HGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDH 627 (733)
Q Consensus 557 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~ 627 (733)
..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 677788888 99999999999999985 4553 222111 111111111 0112
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhh----------CCHHHHHHHHHHHhccCCCCch
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAH----------GNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
+..+..+|.+.|++++|+..++++. ..|+ ...+..+..++... |++++|+..++++.+..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4556777778888888888877654 3333 33556666667655 8899999999999999999964
Q ss_pred ---HHHHHHHHHHhcCChHHHH
Q 004733 693 ---VYVLLSNIYAAAGLWEEAA 711 (733)
Q Consensus 693 ---~~~~l~~~~~~~g~~~~A~ 711 (733)
+...+..++...|+++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 4555666666666655443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=4.2e-09 Score=101.80 Aligned_cols=174 Identities=9% Similarity=-0.016 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCC-----
Q 004733 524 LGNAMITLYAKCGDLDCSLRVFNMMIE-----KD----TISWNALISAYAQH-GEGKEAVSCFKAMQDVGRIKPD----- 588 (733)
Q Consensus 524 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~p~----- 588 (733)
+|+.+..+|.+.|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~---~~~~~~~~ 155 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW---YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---HHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH---HHhCCChH
Confidence 445556666666666666666665542 11 23577788888886 9999999999998773 221
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-----hHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh--
Q 004733 589 --QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAE-----DHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-- 658 (733)
Q Consensus 589 --~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-- 658 (733)
..++..+...+...|++++|+..+++..+...-.+.. ..+..+..++...|++++|...+++.. ..|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2457788889999999999999999998751111121 146777888899999999999998866 455432
Q ss_pred ----hHHHHHHHHH--hhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 659 ----NWWALFSACA--AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 659 ----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
.+..++.++. ..+++++|+..++++..++|.....+..+-..
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 2334455554 45678889999888888888765555544433
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=1.2e-09 Score=118.96 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=112.3
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 533 AKCGDLDCSLRVFNMMI-----------EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 533 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHH
Confidence 45566666666666654 2244566666777777777777777777777743 2344566666777777
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRI 678 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~ 678 (733)
.|++++|...|+++.+. .| +...+..+..++.+.|++++ ++.+++.. ..| +...+..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777765 34 35566777777777777777 77776654 333 44566777777777777777777
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHhcCC
Q 004733 679 IAGLLLEREQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 679 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 706 (733)
.++++.+++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777766444
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=2.7e-09 Score=94.24 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH-
Q 004733 556 WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL- 634 (733)
Q Consensus 556 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~- 634 (733)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+. .|+......+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 3445556667777777777777776632 223455666777777777777777777777654 3333322222211
Q ss_pred hhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--chHHHHHHHHHHhcCChHHH
Q 004733 635 LGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK--PSVYVLLSNIYAAAGLWEEA 710 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 710 (733)
+...+...+|...+++.. ..| +...+..+..++...|++++|+..++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 122223344666666654 344 46678888889999999999999999999999875 56899999999999999999
Q ss_pred HHHHHHHHh
Q 004733 711 ANIRELLKR 719 (733)
Q Consensus 711 ~~~~~~~~~ 719 (733)
...+++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.00 E-value=1e-07 Score=96.10 Aligned_cols=194 Identities=12% Similarity=0.016 Sum_probs=141.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC--CC-
Q 004733 525 GNAMITLYAKCGDLDCSLRVFNMMIE-----KDT----ISWNALISAYAQHGEGKEAVSCFKAMQDV----GRIK--PD- 588 (733)
Q Consensus 525 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~--p~- 588 (733)
++.+...+...|++++|.+.+++... .+. .++..+...+...|++++|...+++..+. + .. |.
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~ 134 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-LEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CTTSTHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-cccCcHH
Confidence 34556667777888888888877642 222 23566778889999999999999988753 2 11 32
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC----CchHHHHHHHHhhhcCChHHHHHHHHhcC---CCCC-hhhH
Q 004733 589 QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP----AEDHLSCMLDLLGRAGYLDEAERVINSQH---IQAR-SDNW 660 (733)
Q Consensus 589 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~ 660 (733)
...+..+...+...|++++|...+++.... .... ....+..+...+...|++++|...+++.. ..++ +..+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 213 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 213 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhH
Confidence 235666777889999999999999998865 2111 12457778889999999999999998754 1222 1222
Q ss_pred H-----HHHHHHHhhCCHHHHHHHHHHHhccCCCCc----hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 661 W-----ALFSACAAHGNLRLGRIIAGLLLEREQDKP----SVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 661 ~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
. ..+..+...|++++|...++++.+..|.++ ..+..++.++...|++++|...+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 214 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 223447789999999999999998776542 24678899999999999999999987653
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=3.7e-08 Score=89.81 Aligned_cols=172 Identities=9% Similarity=-0.020 Sum_probs=137.6
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHh
Q 004733 541 SLRVFNMMI-EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG----LVDDGTRIFDSM 615 (733)
Q Consensus 541 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~A~~~~~~~ 615 (733)
|.+.|++.. ..++..+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|...|++.
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 444444443 3466777778888888899999999999998866 55667777777777 6 899999999999
Q ss_pred HhhcCCCCCchHHHHHHHHhhh----cCChHHHHHHHHhcC-CCCC---hhhHHHHHHHHHh----hCCHHHHHHHHHHH
Q 004733 616 VNDYGFIPAEDHLSCMLDLLGR----AGYLDEAERVINSQH-IQAR---SDNWWALFSACAA----HGNLRLGRIIAGLL 683 (733)
Q Consensus 616 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 683 (733)
.+. | ++..+..|..+|.. .+++++|.+.+++.. ..|. +..+..+...|.. .+++++|+..++++
T Consensus 80 ~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 765 3 56677778888877 889999999999877 3332 6778888888887 78999999999999
Q ss_pred hccCCCCchHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 004733 684 LEREQDKPSVYVLLSNIYAAA-G-----LWEEAANIRELLKRTGV 722 (733)
Q Consensus 684 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 722 (733)
.+. |.++..+..|+.+|..- | +.++|...+++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 998 77788999999998764 4 89999999999988774
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=4.3e-09 Score=112.68 Aligned_cols=160 Identities=10% Similarity=0.027 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 004733 535 CGDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRI 611 (733)
Q Consensus 535 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 611 (733)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888887763 245677778888888888888888888888743 23456677777888888888888888
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhHHHHHHHHHhh---CCHHHHHHHHHHHhcc
Q 004733 612 FDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNWWALFSACAAH---GNLRLGRIIAGLLLER 686 (733)
Q Consensus 612 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 686 (733)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++.. . +.+...+..+..++... |++++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888866 22345677788888888888888888887755 3 33455677777778887 8888888888888888
Q ss_pred CCCCchHHHHHH
Q 004733 687 EQDKPSVYVLLS 698 (733)
Q Consensus 687 ~p~~~~~~~~l~ 698 (733)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 888877777666
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.7e-08 Score=84.46 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=96.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 45666777777788888888888877754 334566777777777788888888888887765 23345567777788
Q ss_pred hhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 635 LGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888887655 3344566777788888888888888888888888775
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.94 E-value=1.4e-09 Score=92.97 Aligned_cols=125 Identities=10% Similarity=-0.071 Sum_probs=103.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-CC-CChhhHHHHHHHHHhhC
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-IQ-ARSDNWWALFSACAAHG 671 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g 671 (733)
|...+...|++++|+..++..... .|+ ...+..+..+|.+.|++++|++.|++.. .. .++..|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445667788999999999988643 444 3356678999999999999999999876 44 45668899999999999
Q ss_pred CHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHH-HHHHHhCCC
Q 004733 672 NLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANI-RELLKRTGV 722 (733)
Q Consensus 672 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 722 (733)
++++|+..++++++++|+++.++..++.+|...|++++|.+. +++..+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 588776543
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=7.7e-09 Score=87.69 Aligned_cols=101 Identities=10% Similarity=-0.041 Sum_probs=82.6
Q ss_pred CCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 621 FIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 621 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
+.|+ ...+..+...+.+.|++++|...|+++. .+.++..|..+..++...|++++|+..++++.+++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 3456667777788888888888887765 344566788888889999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 004733 698 SNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+.+|...|++++|+..|++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999888754
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.8e-08 Score=90.41 Aligned_cols=159 Identities=10% Similarity=0.005 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004733 526 NAMITLYAKCGDLDCSLRVFNMMIEK---DTISWNA----------------LISAYAQHGEGKEAVSCFKAMQDVGRIK 586 (733)
Q Consensus 526 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 586 (733)
-.....+...|++++|...|++..+. +...|.. +..++.+.|++++|+..|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C
Confidence 34455677889999999999988743 2345666 7888888999999999999998854 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCC--hHHHHHHHHhcCCCCChh--hHH
Q 004733 587 PDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGY--LDEAERVINSQHIQARSD--NWW 661 (733)
Q Consensus 587 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~--~~~ 661 (733)
-+...+..+...+...|++++|...|+++++. .|+ ...+..+..+|...|+ .+.+...++... .|++. .+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 34567888888888999999999999998876 444 5677778877766554 445556666654 34433 334
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 662 ALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 662 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
....++...|++++|+..+++++++.|++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 45556677889999999999999999864
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=7.3e-09 Score=112.75 Aligned_cols=152 Identities=13% Similarity=-0.027 Sum_probs=132.6
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 564 AQHGEGKEAVSCFKAMQ--------DVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~--------~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
...|++++|++.+++.. + ..|+ ...+..+..++...|++++|...++++.+. -+.+...+..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV---DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc---ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHH
Confidence 67899999999999998 4 3354 567888888999999999999999999976 23346688899999
Q ss_pred hhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 635 LGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
+...|++++|++.|++.. ..| +...+..+..++...|++++ +..++++++.+|+++.++..++.+|...|++++|++
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999866 444 56678889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 004733 713 IRELLKRTG 721 (733)
Q Consensus 713 ~~~~~~~~~ 721 (733)
.|++..+..
T Consensus 556 ~~~~al~l~ 564 (681)
T 2pzi_A 556 TLDEVPPTS 564 (681)
T ss_dssp HHHTSCTTS
T ss_pred HHHhhcccC
Confidence 999766543
No 105
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.89 E-value=2e-08 Score=96.72 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIE-------K----DTISWNALISAYAQHGEGKEAVSCFKAMQDV-----GRI 585 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~ 585 (733)
..++..+...+...|++++|.+.+++..+ + ...++..+...+...|++++|...++++.+. +.-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556677777777777777777776642 1 1346777888899999999999999998874 101
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc------CCCCC-chHHHHHHHHhhhcCC------hHHHHHHHHhc
Q 004733 586 KPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDY------GFIPA-EDHLSCMLDLLGRAGY------LDEAERVINSQ 651 (733)
Q Consensus 586 ~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 651 (733)
.|+ ..++..+...|...|++++|...++++.+.. ...+. ...+..+.......+. +.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 3467788889999999999999999987641 11222 2234444433333332 34444444444
Q ss_pred C-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 652 H-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 652 ~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
. ..|+ ...+..+...+...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 2233 3367788889999999999999999988753
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=1.7e-07 Score=90.53 Aligned_cols=161 Identities=7% Similarity=-0.070 Sum_probs=120.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHH
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA----TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSC 630 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~ 630 (733)
.+..+...|++++|..++++..+.....|+.. .+..+...+...|++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35677888999999999999887431223321 2334566777888999999999999874122223 226788
Q ss_pred HHHHhhhcCChHHHHHHHHhcC-----CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------chHHH
Q 004733 631 MLDLLGRAGYLDEAERVINSQH-----IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK------PSVYV 695 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 695 (733)
+..+|...|++++|...++++. .+.+ ..++..+...|...|++++|+..++++++..+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999999888754 1112 2256788888999999999999999999865433 67899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHh
Q 004733 696 LLSNIYAAAGL-WEEAANIRELLKR 719 (733)
Q Consensus 696 ~l~~~~~~~g~-~~~A~~~~~~~~~ 719 (733)
.+|.+|...|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988764
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.5e-08 Score=83.36 Aligned_cols=107 Identities=8% Similarity=-0.115 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACA 668 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 668 (733)
.+......|.+.|++++|++.|++.++. -+.+...+..+..+|.+.|++++|+..+++.. .+.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3445555555556666666666555544 12234445555555555555555555555433 2223334455555555
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
..|++++|+..++++++++|+++.++..|+.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 5555555555555555555555555544443
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=9.3e-08 Score=86.90 Aligned_cols=159 Identities=14% Similarity=0.018 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHH----------------HHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 557 NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTA----------------VLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 557 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~----------------ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
......+...|++++|+..|++..+. .|+. ..|.. +..+|...|++++|...+++..+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 34455677889999999999999884 4654 45666 788899999999999999999876
Q ss_pred CCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCC--HHHHHHHHHHHhccCCCCchHH
Q 004733 620 GFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGN--LRLGRIIAGLLLEREQDKPSVY 694 (733)
Q Consensus 620 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 694 (733)
.| +...+..+..++...|++++|+..++++. ..| +...+..+..++...|+ .+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 44 46788899999999999999999999876 444 45677778777766554 45566666666433222 2346
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 695 VLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 695 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..++.++...|++++|+..|++..+..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 6778889999999999999998887654
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=7.2e-08 Score=93.87 Aligned_cols=220 Identities=8% Similarity=-0.011 Sum_probs=151.3
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcc-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 004733 465 NGFPVQGLQHFSELLMSELRPDEYTLSVALSSCAR-ISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLR 543 (733)
Q Consensus 465 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 543 (733)
.|++++|.+++++..+... .. +.. .++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3556677777776654321 10 112 46777777766543 456777888888888
Q ss_pred HHHhcCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 004733 544 VFNMMIE-----KD----TISWNALISAYAQHGEGKEAVSCFKAMQDVGR--IKPD--QATFTAVLSACSHAGLVDDGTR 610 (733)
Q Consensus 544 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~p~--~~~~~~ll~~~~~~~~~~~A~~ 610 (733)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+... -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877642 12 34678888899999999999999998865310 0222 2467778888888 99999999
Q ss_pred HHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC-C---CCC----hhhHHHHHHHHHhhCCHHHHHH
Q 004733 611 IFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH-I---QAR----SDNWWALFSACAAHGNLRLGRI 678 (733)
Q Consensus 611 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~ 678 (733)
.+++..+.+.-..+ ..++..+..+|.+.|++++|+..+++.. . .+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998865211111 3567888999999999999999998755 1 121 1244556666778899999999
Q ss_pred HHHHHhccCCCCchH-----HHHHHHHHHhcCChHHHHHH
Q 004733 679 IAGLLLEREQDKPSV-----YVLLSNIYAAAGLWEEAANI 713 (733)
Q Consensus 679 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 713 (733)
.+++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 88875533 34455544 67887766663
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=3.7e-08 Score=80.90 Aligned_cols=102 Identities=10% Similarity=-0.050 Sum_probs=89.7
Q ss_pred CCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 621 FIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 621 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
+.|+ ...+......|.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555 3467778899999999999999999866 444567888899999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 698 SNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 698 ~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+.+|...|++++|++.|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999987654
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=8.4e-08 Score=87.77 Aligned_cols=129 Identities=11% Similarity=-0.021 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.+..+...+...|++++|+..|++. +.|+...+..+...|...|++++|...+++..+. .+.+...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 3445566667777777777777655 4566677777777777777777777777777765 22335566677777
Q ss_pred hhhcCChHHHHHHHHhcC-CCCC-h----------------hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 635 LGRAGYLDEAERVINSQH-IQAR-S----------------DNWWALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~-~~~~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
+...|++++|.+.+++.. ..|+ . ..+..+..++...|++++|...++++.+..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777777777777776644 2221 1 455666666777777777777777777777765
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=5.8e-08 Score=103.92 Aligned_cols=153 Identities=11% Similarity=-0.002 Sum_probs=99.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHhhhcCChHHH
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-EDHLSCMLDLLGRAGYLDEA 644 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 644 (733)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+. .|+ ...+..+..+|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 367777888888777633 223556777777777888888888888887754 343 55777777888888888888
Q ss_pred HHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 004733 645 ERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA---GLWEEAANIRELLKR 719 (733)
Q Consensus 645 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 719 (733)
.+.+++.. .+.+...+..+..++...|++++|+..++++.+.+|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 88877655 3334556777777788888888888888888888888888888888888888 888888888887776
Q ss_pred CCCc
Q 004733 720 TGVI 723 (733)
Q Consensus 720 ~~~~ 723 (733)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6544
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=4.7e-08 Score=94.00 Aligned_cols=134 Identities=8% Similarity=-0.068 Sum_probs=113.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHH
Q 004733 587 PDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALF 664 (733)
Q Consensus 587 p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 664 (733)
.+...+..+...+...|++++|...++++.+. .| +...+..+..++.+.|++++|...++++. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34456777788899999999999999999976 45 46688889999999999999999999987 566655443333
Q ss_pred H-HHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 665 S-ACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 665 ~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
. .+...++.+.|+..++++.+.+|+++..+..|+.+|...|++++|+..|+++.+..+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 3667888899999999999999999999999999999999999999999999886543
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=2.5e-07 Score=89.35 Aligned_cols=163 Identities=7% Similarity=-0.094 Sum_probs=116.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ------ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA---- 624 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~---- 624 (733)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|...+++..+...-..+
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34445667778888888888888887743 1222 12334555667788899999988888754111111
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC----CCCC-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC------
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH----IQAR-----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQD------ 689 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------ 689 (733)
...++.+...|...|++++|...+++.. ..|+ ...+..+...|...|++++|+..++++.+..++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3367788888889999999888887644 1222 146778888899999999999999998886532
Q ss_pred CchHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 004733 690 KPSVYVLLSNIYAAAGLWEEA-ANIRELLKR 719 (733)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 719 (733)
-+.++..++.+|...|++++| ..++++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156789999999999999999 777876643
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=1.3e-08 Score=86.55 Aligned_cols=94 Identities=15% Similarity=0.032 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
.+..+...+.+.|++++|...|++.. .+.++..|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 33444445555555555555555433 2223444555555555556666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhC
Q 004733 705 GLWEEAANIRELLKRT 720 (733)
Q Consensus 705 g~~~~A~~~~~~~~~~ 720 (733)
|++++|+..|++..+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666555543
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=1.9e-06 Score=82.21 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=103.6
Q ss_pred CHHHHHHHHHhcCC---CChhhHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHH
Q 004733 537 DLDCSLRVFNMMIE---KDTISWNALISAY----AQH---GEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVD 606 (733)
Q Consensus 537 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 606 (733)
++++++++++.+.. .+..+|+.-...+ ... +++++++.+++++.+.. +.+..+|..-...+...|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccC
Confidence 55555555555542 2333444332222 333 56667777777776643 334555555555555555555
Q ss_pred --HHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCC------hHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCC-HHH
Q 004733 607 --DGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGY------LDEAERVINSQH--IQARSDNWWALFSACAAHGN-LRL 675 (733)
Q Consensus 607 --~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-~~~ 675 (733)
+++++++++.+. -.-+...|+.-..++.+.|+ ++++++.++++. .+.+...|..+...+.+.|. .+.
T Consensus 162 ~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 677777777655 12233444444444444444 666666666544 33344456555556666665 344
Q ss_pred HHHHHHHHhccC---CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 676 GRIIAGLLLERE---QDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 676 A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
...+++++.+++ |.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 556666666655 66777777777777777888888888777765
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=3e-08 Score=96.54 Aligned_cols=197 Identities=7% Similarity=-0.080 Sum_probs=147.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 500 ISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAM 579 (733)
Q Consensus 500 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 579 (733)
.|++.+|.+++++..+.... . .+...++++.|...|... ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 46677888888877653211 0 011147888888887653 56788899999999999988
Q ss_pred HHcCC-C-CCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhc
Q 004733 580 QDVGR-I-KPD--QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQ 651 (733)
Q Consensus 580 ~~~~~-~-~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (733)
.+... . .+. ..+|..+...|...|++++|+..+++..+.+.-..+ ...+..+..+|.. |++++|+..+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76320 0 111 246888888999999999999999998765211111 3467788899988 9999999999875
Q ss_pred C-CCC---C----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc------hHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 652 H-IQA---R----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP------SVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 652 ~-~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
. ..| + ...+..+...+...|++++|+..++++++..|++. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 111 1 34677888899999999999999999999876543 36777888888999999999999988
Q ss_pred H
Q 004733 718 K 718 (733)
Q Consensus 718 ~ 718 (733)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=1.3e-07 Score=82.47 Aligned_cols=127 Identities=7% Similarity=-0.053 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACA 668 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 668 (733)
.+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++.. .+.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666677777777777776654 22245566667777777777777777776654 3334567778888889
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI--YAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 719 (733)
..|++++|...++++.+..|+++..+..++.+ +...|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999888655555 8888999999999887654
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=4.2e-08 Score=86.71 Aligned_cols=124 Identities=4% Similarity=0.005 Sum_probs=62.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH-hhhcCCh--
Q 004733 565 QHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL-LGRAGYL-- 641 (733)
Q Consensus 565 ~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-- 641 (733)
..|++++|+..+++..+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..+..+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4456666666666665533 233455555666666666666666666666554 11233444445555 4455555
Q ss_pred HHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 642 DEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 642 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
++|...++++. ..| +...+..+...+...|++++|...++++.+..|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 55555555433 222 2334444555555555555555555555555555543
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=3.7e-07 Score=84.19 Aligned_cols=184 Identities=10% Similarity=-0.009 Sum_probs=128.8
Q ss_pred HHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh----hHHH
Q 004733 487 EYTLSVALSSCARISSLRHGKQIHGYVLKNNLIS--KMSLGNAMITLYAKCGDLDCSLRVFNMMIE--KDTI----SWNA 558 (733)
Q Consensus 487 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~ 558 (733)
...+......+...|++++|...++.+.+..... ....+..+..++.+.|++++|...|+++.+ |+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888999999999999998754322 245677788999999999999999999863 4321 3444
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 004733 559 LISAYAQ------------------HGEGKEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDY 619 (733)
Q Consensus 559 l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 619 (733)
+..++.. .|++++|+..|+++++. .|+.. .+..... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 5555543 57899999999999984 46643 2221111 001111111
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCCh----hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCch
Q 004733 620 GFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARS----DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPS 692 (733)
Q Consensus 620 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 692 (733)
.....+...|.+.|++++|+..++++. ..|+. ..+..+..++.+.|++++|+..++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112346678888999999999988766 34442 35677888899999999999999999888887654
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=3.9e-08 Score=94.13 Aligned_cols=191 Identities=6% Similarity=-0.054 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMI--EK-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSA 598 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~ 598 (733)
...+..+...+.+.|++++|...|++.. .| +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 4455667788888999999999999876 34 66788889999999999999999999998843 3345678888889
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHH
Q 004733 599 CSHAGLVDDGTRIFDSMVNDYGFIPAE-DHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 677 (733)
|...|++++|...+++..+. .|+. ..+...+....+..+...... .......++..... .+..+ ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~-~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHS-YLTRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHH-HHHHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHH-HHHHH-HHHHHHHHH
Confidence 99999999999999998865 2321 111111121111111111111 12222333333333 33333 378999999
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 004733 678 IIAGLLLEREQDKPSVYVLLSNIYAAA-GLWEEAANIRELLKRT 720 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 720 (733)
..++++.+.+|++......+...+... +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999988888888777776 7899999999988764
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=8.2e-08 Score=84.64 Aligned_cols=130 Identities=11% Similarity=0.010 Sum_probs=104.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHH-HH
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSA-CA 668 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~~ 668 (733)
+..+...+...|++++|...+++..+. .| +...+..+..++.+.|++++|+..++++. ..|++..+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 455667788999999999999999875 44 46688899999999999999999999877 45544333222222 22
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (733)
..++...|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 33344568999999999999999999999999999999999999999999876543
No 123
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=2e-07 Score=77.17 Aligned_cols=116 Identities=8% Similarity=-0.107 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSAC 667 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 667 (733)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44556666677777777777777777655 22345566677777777777777777776654 333456777788888
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCCh
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLW 707 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 707 (733)
...|++++|...++++.+..|+++..+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988875
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=3.2e-07 Score=75.22 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSAC 667 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 667 (733)
..+..+...+...|++++|.+.++++.+. .+.+...+..+..++.+.|++++|...++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45566666677777777777777777655 22345566667777777777777777776654 334455677778888
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG 705 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 705 (733)
...|++++|...++++.+..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88889999999999999999999988888888877654
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=1.8e-07 Score=77.90 Aligned_cols=115 Identities=7% Similarity=-0.112 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSAC 667 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 667 (733)
..+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++.. .+.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555555666666666666666666543 12234555666666666666666666666544 233455677777788
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCC
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 706 (733)
...|++++|+..++++.+..|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888887764
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=1.6e-07 Score=87.22 Aligned_cols=184 Identities=11% Similarity=-0.044 Sum_probs=126.2
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhhHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCCH--------------
Q 004733 534 KCGDLDCSLRVFNMMIE--K-DTISWNAL-------ISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-------------- 589 (733)
Q Consensus 534 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-------------- 589 (733)
..++.+.|.+.|.++.. | ....|..+ ...+.+.++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCccccc
Confidence 46778888888887763 3 34567666 4555555566666666665554 33322
Q ss_pred --------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCCh----
Q 004733 590 --------ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARS---- 657 (733)
Q Consensus 590 --------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 657 (733)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|++
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12234556677888888888888888754 344335555666788888888888888866644433
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccC--CC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLERE--QD-KPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
..+..+..++...|++++|+..++++.... |. .+.....++.++.++|+.++|..+|+++.+..+.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 256667777888888888888888887543 44 4457788888888888888888888888876553
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=1.6e-07 Score=92.46 Aligned_cols=125 Identities=8% Similarity=-0.100 Sum_probs=95.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----------------chHHHHHHHHhhhcCChHHHHHHHHhcC--
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----------------EDHLSCMLDLLGRAGYLDEAERVINSQH-- 652 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 652 (733)
.+..+...|.+.|++++|...|++.++. .|+ ...+..+..+|.+.|++++|+..++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555544 222 3577778888888888888888888765
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEA-ANIRELLK 718 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 718 (733)
.+.+...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++| ...+++|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888889999999999999999999999999999999999999999999999 44566553
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.4e-07 Score=79.66 Aligned_cols=89 Identities=10% Similarity=-0.044 Sum_probs=43.5
Q ss_pred HHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChH
Q 004733 631 MLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWE 708 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 708 (733)
+...+.+.|++++|...|++.. .+.+...|..+..++...|++++|+..++++.+.+|+++..+..++.+|...|+++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 3444444444444444444433 12233344444444555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 004733 709 EAANIRELLKR 719 (733)
Q Consensus 709 ~A~~~~~~~~~ 719 (733)
+|++.|++..+
T Consensus 104 ~A~~~~~~al~ 114 (142)
T 2xcb_A 104 GAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=8.3e-07 Score=81.03 Aligned_cols=128 Identities=11% Similarity=0.021 Sum_probs=108.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCH
Q 004733 526 NAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLV 605 (733)
Q Consensus 526 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 605 (733)
..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcccH
Confidence 4566778889999999999999998888899999999999999999999999999854 44567788899999999999
Q ss_pred HHHHHHHHHhHhhcCCCCCc----------------hHHHHHHHHhhhcCChHHHHHHHHhcC-CCCCh
Q 004733 606 DDGTRIFDSMVNDYGFIPAE----------------DHLSCMLDLLGRAGYLDEAERVINSQH-IQARS 657 (733)
Q Consensus 606 ~~A~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 657 (733)
++|...++++.+. .+.+. ..+..+..++.+.|++++|.+.+++.. ..|+.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999875 12222 678889999999999999999998865 55654
No 130
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=4.4e-05 Score=79.01 Aligned_cols=125 Identities=12% Similarity=0.015 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 554 ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACS-HAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
..|...+....+.++.+.|..+|+++ ... ..+...|......-. ..++.+.|..+|+...+.++ -++..+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yi 361 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 45666777777788899999999998 322 223444432222111 23368999999999988732 2344566678
Q ss_pred HHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 633 DLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
+...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888999999999999974 3456778888777888999999888888775
No 131
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=1.2e-07 Score=77.25 Aligned_cols=96 Identities=13% Similarity=-0.059 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
.+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45556778888999999999988766 344 5667888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 004733 705 GLWEEAANIRELLKRTGV 722 (733)
Q Consensus 705 g~~~~A~~~~~~~~~~~~ 722 (733)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887543
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.9e-07 Score=76.90 Aligned_cols=94 Identities=7% Similarity=-0.055 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA 704 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 704 (733)
.+..+...+.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..++++++.+|+++.++..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34445555556666666666665543 2333455666666666677777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhC
Q 004733 705 GLWEEAANIRELLKRT 720 (733)
Q Consensus 705 g~~~~A~~~~~~~~~~ 720 (733)
|++++|...+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 7777777777666554
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.65 E-value=1.8e-06 Score=78.57 Aligned_cols=173 Identities=8% Similarity=-0.067 Sum_probs=129.5
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 004733 506 GKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK-DTISWNALISAYAQHG----EGKEAVSCFKAMQ 580 (733)
Q Consensus 506 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~ 580 (733)
|.+.++...+.| ++..+..+...|...+++++|.+.|++..+. ++..+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444444443 4555666777787888888888888887643 56677777777777 6 8999999999998
Q ss_pred HcCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHhhh----cCChHHHHHHHH
Q 004733 581 DVGRIKPDQATFTAVLSACSH----AGLVDDGTRIFDSMVNDYGFIPA---EDHLSCMLDLLGR----AGYLDEAERVIN 649 (733)
Q Consensus 581 ~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 649 (733)
+.| +...+..|...|.. .+++++|...|++..+. .|+ +..+..|..+|.. .+++++|...++
T Consensus 81 ~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 81 EAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 865 56677777777776 78999999999999865 342 6778888888888 788999999998
Q ss_pred hcC-CCCChhhHHHHHHHHHhh-C-----CHHHHHHHHHHHhccCCC
Q 004733 650 SQH-IQARSDNWWALFSACAAH-G-----NLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 650 ~~~-~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 689 (733)
+.. ..+++..+..+...|... | ++++|...++++.+....
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 876 335566777777776543 3 899999999999887643
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=2.2e-07 Score=74.51 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=83.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CchHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD--KPSVYVLLSNI 700 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 700 (733)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..++++.+..|+ ++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4456667777778888888888877655 3445567778888899999999999999999999999 99999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCCcC
Q 004733 701 YAAA-GLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 701 ~~~~-g~~~~A~~~~~~~~~~~~~~ 724 (733)
|... |++++|.+.+++........
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999 99999999999998776543
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=8.4e-08 Score=81.46 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=88.4
Q ss_pred HHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-
Q 004733 575 CFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH- 652 (733)
Q Consensus 575 ~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 652 (733)
.|+++.+ +.|+. ..+..+...+...|++++|...|++.... -+.+...+..+..++...|++++|+..+++..
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455544 34543 45666677788888888888888888765 23346677778888888888888888888765
Q ss_pred C-CCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 653 I-QARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 653 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
. +.++..+..+..++...|++++|+..++++++..|+++.......
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 3 345567788888899999999999999999999998887654443
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=3.4e-08 Score=89.19 Aligned_cols=97 Identities=6% Similarity=-0.169 Sum_probs=71.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 004733 626 DHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA 703 (733)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 703 (733)
..+..+..++.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..++++.+..|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 456667777888888888888877655 344566788888889999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCCC
Q 004733 704 AGLWEEAA-NIRELLKRTGV 722 (733)
Q Consensus 704 ~g~~~~A~-~~~~~~~~~~~ 722 (733)
.|+.+++. ..+..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 99888887 55666655443
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=3.4e-07 Score=77.47 Aligned_cols=104 Identities=8% Similarity=0.015 Sum_probs=71.3
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhH
Q 004733 585 IKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNW 660 (733)
Q Consensus 585 ~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~ 660 (733)
+.|+. ..+..+...+.+.|++++|...|+++.+. .| +...|..+..+|...|++++|+..|++.. . +.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 34443 34555666667777777777777777755 33 35566677777777777777777777655 3 3345567
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 7777778888888888888888888887754
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=5.7e-07 Score=75.28 Aligned_cols=96 Identities=9% Similarity=-0.116 Sum_probs=55.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|+..++++.+.+|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3344455555555555555555555433 22234455555555666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHHHhC
Q 004733 703 AAGLWEEAANIRELLKRT 720 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~ 720 (733)
..|++++|...+++..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 666666666666665543
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=3e-07 Score=79.92 Aligned_cols=111 Identities=11% Similarity=-0.025 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhHHHHHH
Q 004733 588 DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNWWALFS 665 (733)
Q Consensus 588 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~ 665 (733)
+...+..+...+...|++++|+..|++.++. .+.+...+..+..+|.+.|++++|+..+++.. . +.+...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456778888899999999999999999876 23356788889999999999999999998866 3 444667888889
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 666 ACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
++...|++++|+..++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999876666543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=6e-07 Score=79.16 Aligned_cols=124 Identities=6% Similarity=-0.004 Sum_probs=97.6
Q ss_pred HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHH-HHhhCCH--
Q 004733 599 CSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSA-CAAHGNL-- 673 (733)
Q Consensus 599 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~-- 673 (733)
+...|++++|...+++..+. .+.+...+..+..+|...|++++|...+++.. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888899999888876 23456788888999999999999999988765 33455667777777 6788888
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 004733 674 RLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (733)
++|+..++++.+.+|+++.++..++.+|...|++++|...++++.+..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999988876543
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=5.9e-06 Score=79.65 Aligned_cols=159 Identities=8% Similarity=-0.090 Sum_probs=118.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---Chh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHH
Q 004733 528 MITLYAKCGDLDCSLRVFNMMIEK---DTI------SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTA 594 (733)
Q Consensus 528 l~~~~~~~~~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ 594 (733)
.+..+...|++++|...+++..+. +.. .+..+...+...+++++|+..++++.+...-.++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778889999999999987642 111 23346666677789999999999998843112332 36888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcC----CCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-------CCCC-hhhHH
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYG----FIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-------IQAR-SDNWW 661 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~ 661 (733)
+...|...|++++|...++++.+... ..+. ..++..+..+|.+.|++++|...+++.. ..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999985311 1111 2367889999999999999999988644 1122 45678
Q ss_pred HHHHHHHhhC-CHHHHHHHHHHHhcc
Q 004733 662 ALFSACAAHG-NLRLGRIIAGLLLER 686 (733)
Q Consensus 662 ~l~~~~~~~g-~~~~A~~~~~~~~~~ 686 (733)
.+..++...| ++++|...++++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888899999 579999999998874
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=7e-07 Score=72.24 Aligned_cols=92 Identities=13% Similarity=-0.032 Sum_probs=43.8
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCC
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGL 706 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 706 (733)
..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|+++..+..++.+|...|+
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence 333444444444444444444332 122333444444444555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHhC
Q 004733 707 WEEAANIRELLKRT 720 (733)
Q Consensus 707 ~~~A~~~~~~~~~~ 720 (733)
+++|.+.+++..+.
T Consensus 88 ~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 88 FEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 55555555554443
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=2.7e-07 Score=77.87 Aligned_cols=108 Identities=12% Similarity=-0.046 Sum_probs=79.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACA 668 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 668 (733)
.+..+...+...|++++|...|+++... -+.+...+..+..++.+.|++++|...+++.. .+.++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555566777778888888888887765 22345567777778888888888888877655 3344556777888888
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
..|++++|+..++++.+..|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999888776655443
No 144
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.55 E-value=3.9e-05 Score=73.05 Aligned_cols=160 Identities=9% Similarity=0.037 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC------
Q 004733 536 GDLDCSLRVFNMMIE---KDTISWNALISAYAQHGEGK--EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGL------ 604 (733)
Q Consensus 536 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~------ 604 (733)
+++++++.+++.+.+ ++..+|+.-.-.+.+.|+++ ++++.++++++.. +-|...|+.-.......+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhh
Confidence 678889999888874 45667777777777888888 9999999999965 4566777766666666665
Q ss_pred HHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChH-HHHHHHHhcC-C----CCChhhHHHHHHHHHhhCCHHHHHH
Q 004733 605 VDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLD-EAERVINSQH-I----QARSDNWWALFSACAAHGNLRLGRI 678 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~-~----~~~~~~~~~l~~~~~~~g~~~~A~~ 678 (733)
++++++.+++++.. .+-|...|+.+...+.+.|+.. ++..+..+.. . ..++..+..++.++.+.|+.++|+.
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999999999876 3345667888888888888844 4566777655 1 3355677888888999999999999
Q ss_pred HHHHHhc-cCCCCchHHHHHHH
Q 004733 679 IAGLLLE-REQDKPSVYVLLSN 699 (733)
Q Consensus 679 ~~~~~~~-~~p~~~~~~~~l~~ 699 (733)
+++.+.+ .+|-....|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999997 79999888887664
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=9.2e-07 Score=79.98 Aligned_cols=129 Identities=16% Similarity=0.060 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC----CCC-C----h
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDY---GFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH----IQA-R----S 657 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~----~ 657 (733)
.+..+...+...|++++|...+++..+.. +..| ....+..+...+...|++++|.+.+++.. ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444455555555444444310 0111 12234444445555555555555544322 011 1 1
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCC--CCc----hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQ--DKP----SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
..+..+...+...|++++|...++++.+..+ .++ .++..++.+|...|++++|.+++++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2344555556666666666666666665321 121 2346777777777777777777776654
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=2.1e-06 Score=69.28 Aligned_cols=110 Identities=11% Similarity=-0.006 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSAC 667 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 667 (733)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555556666667777777777776654 22245566666677777777777777766544 233455677788888
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 004733 668 AAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIY 701 (733)
Q Consensus 668 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 701 (733)
...|++++|...++++.+..|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8899999999999999999999988888777653
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=4e-07 Score=74.88 Aligned_cols=92 Identities=4% Similarity=-0.109 Sum_probs=52.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc-------hHHHHHH
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP-------SVYVLLS 698 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~ 698 (733)
+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|+..+++++++.|++. .+|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344555555555555555555433 222 334455555666666666666666666666655543 2455566
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 004733 699 NIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+|...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 666666777777776666554
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=7.6e-07 Score=73.96 Aligned_cols=98 Identities=7% Similarity=-0.095 Sum_probs=87.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++.+..|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5577888999999999999999999865 444 56678888888999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 004733 703 AAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|++++|.+.+++..+...
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCG
T ss_pred HHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999887654
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.4e-06 Score=71.65 Aligned_cols=110 Identities=8% Similarity=-0.092 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhHHHHHHHHH
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNWWALFSACA 668 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 668 (733)
.+..+...+...|++++|...|++..+. .+.+...+..+..++.+.|++++|+..+++.. . +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666666777777777666654 12234566666667777777777777666544 2 334556777777888
Q ss_pred hhCCHHHHHHHHHHHhccC------CCCchHHHHHHHHHH
Q 004733 669 AHGNLRLGRIIAGLLLERE------QDKPSVYVLLSNIYA 702 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 702 (733)
..|++++|+..++++.+.+ |+++.++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 8888888888888888888 888877777776543
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=1.4e-06 Score=71.32 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=88.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|+..++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4577888899999999999999999876 34456678888999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 004733 703 AAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=4e-06 Score=72.66 Aligned_cols=93 Identities=9% Similarity=-0.063 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.|..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.++. .+.+...+..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34444445555555555555555555532 123344444444555555555555555555543 11123344455555
Q ss_pred hhhcCChHHHHHHHHhc
Q 004733 635 LGRAGYLDEAERVINSQ 651 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~ 651 (733)
|...|++++|...+++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555443
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=8.8e-07 Score=73.17 Aligned_cols=60 Identities=17% Similarity=0.047 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDK---PSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+..+..++...|++++|+..++++.+..|++ +.++..++.+|...|++++|...++++.+
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444455555555544444444 34444445555555555555555544443
No 153
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=0.00021 Score=73.97 Aligned_cols=334 Identities=10% Similarity=0.032 Sum_probs=163.1
Q ss_pred cChHHHHHHHHhcCC--CCcchhhHHHHHhhccCC-hhHHHHHhccCC------CCChhhHHHHHHHHh----hcCChhH
Q 004733 106 RDLVSVKRVFSEIQN--PDVYSWTTFLSACTKMGH-VDYACEVFDKMP------DRDLPVYNAMITGCT----ENGYEDI 172 (733)
Q Consensus 106 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~------~~~~~~~~~li~~~~----~~~~~~~ 172 (733)
++++.+..+|++... |++..|...+....+.++ .+.+..+|+... ..+...|...+..+. .+++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 566667777776654 666666666655555442 233444444322 124455666665443 2355667
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHhhc--------------cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcC-
Q 004733 173 GIGLFREMHKLDVRRDNYSFASVLSVCD--------------AGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCG- 237 (733)
Q Consensus 173 a~~~~~~m~~~~~~~~~~~~~~ll~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 237 (733)
+..+|++........-...|......-. .+.+..|..+++.+...-...+...|...+..-...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 7777777766211100111111111001 1223333444444332110113345555555432221
Q ss_pred -C-----hHHHHHHHHhhhc-CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHH
Q 004733 238 -N-----VVDACKVFEEAKG-YVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQV 310 (733)
Q Consensus 238 -~-----~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~ 310 (733)
- .+.+..+|++... ...+...|-..+..+.+.|+.++|..++++.... |....+......+...+. +
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~---~ 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA---V 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH---H
T ss_pred cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH---H
Confidence 1 2345667777543 3235566777777788889999999999988877 544433222111111111 1
Q ss_pred HHHHHHhCC------------CcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHH---HHH-hcCChHHHH
Q 004733 311 HAQAMKSGF------------EAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMIS---TYA-QRNLGRSAI 374 (733)
Q Consensus 311 ~~~~~~~g~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~-~~g~~~~a~ 374 (733)
+..+...-. .....+|...+....+.++.+.|..+|++...+. .++...+. .-. ..++.+.|.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHH
Confidence 222221100 0012344555555555555666666666552222 12221111 011 122455555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhh
Q 004733 375 LAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIIT 454 (733)
Q Consensus 375 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 454 (733)
.+|+...+.. |+. +..+...++...+.|+.+.|..+|+.+. .....
T Consensus 341 ~ife~al~~~--~~~-------------------------------~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~l 386 (493)
T 2uy1_A 341 NIFSSGLLKH--PDS-------------------------------TLLKEEFFLFLLRIGDEENARALFKRLE-KTSRM 386 (493)
T ss_dssp HHHHHHHHHC--TTC-------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHH
T ss_pred HHHHHHHHHC--CCC-------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHH
Confidence 5555554421 111 1122345566667788888888888874 34556
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHH
Q 004733 455 WNTLINGFLLNGFPVQGLQHFSELLM 480 (733)
Q Consensus 455 ~~~li~~~~~~~~~~~a~~~~~~m~~ 480 (733)
|...+..=...|+.+.+..++++...
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666665666777777777766653
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.9e-06 Score=73.10 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC-C-CCChhhHHH
Q 004733 589 QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH-I-QARSDNWWA 662 (733)
Q Consensus 589 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~ 662 (733)
...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++.. . +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 345555666666666777777766666643 444 3455555556666666666666655443 2 223444555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
+..++...|++++|...++++.+..|+++.++..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 55555566666666666666666666655555555443
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=1e-05 Score=77.98 Aligned_cols=163 Identities=7% Similarity=-0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCC--HH
Q 004733 524 LGNAMITLYAKCGDLDCSLRVFNMMIE--K-DT------ISWNALISAYAQHGEGKEAVSCFKAMQDVGR--IKPD--QA 590 (733)
Q Consensus 524 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~p~--~~ 590 (733)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|+..+++..+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334566778888999999998876542 1 11 1234455667788899999999999876420 1111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC-------h
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA-----EDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR-------S 657 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-------~ 657 (733)
+|+.+...|...|++++|...++++.+.....|+ ..++..+..+|.+.|++++|+..+++.. ..++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6888888999999999999999998833111232 1477888999999999999999988754 1111 4
Q ss_pred hhHHHHHHHHHhhCCHHHH-HHHHHHHhcc
Q 004733 658 DNWWALFSACAAHGNLRLG-RIIAGLLLER 686 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 686 (733)
..+..+..++...|++++| ...++++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5677888889999999999 7778887763
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=4e-06 Score=71.07 Aligned_cols=98 Identities=10% Similarity=-0.044 Sum_probs=72.1
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 624 AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
+...+..+...+...|++++|...+++.. ..|+ ...+..+..++...|++++|+..++++.+..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 35566667777777888888887777654 4555 455666677777778888888888888887777777777788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 004733 699 NIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888888888888877776654
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=3.5e-06 Score=78.18 Aligned_cols=137 Identities=15% Similarity=0.036 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHH
Q 004733 557 NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA--EDHLSCMLDL 634 (733)
Q Consensus 557 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~ 634 (733)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 34566777888999999988888763 365545555555778889999999999866432 1 121 2356778888
Q ss_pred hhhcCChHHHHHHHHhcCCC---CC--hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 635 LGRAGYLDEAERVINSQHIQ---AR--SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
+.+.|++++|+..|++.... |. .........++.+.|+.++|...++++.+.+|+ +.+...|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999999887522 32 335667777888999999999999999999998 777666643
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=2.4e-06 Score=70.52 Aligned_cols=98 Identities=9% Similarity=-0.058 Sum_probs=87.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..++++.+..|+++.++..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4567778889999999999999999866 34456778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCC
Q 004733 703 AAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 703 ~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|++++|..++++..+..+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999987653
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=6.6e-06 Score=71.32 Aligned_cols=127 Identities=6% Similarity=-0.101 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 45556666777777777777777777743 334566667777777777777777777777765 22345567777777
Q ss_pred hhhcCChHHHHHHHHhcC-CCC-ChhhHH--HHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 635 LGRAGYLDEAERVINSQH-IQA-RSDNWW--ALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
+...|++++|...+++.. ..| +...+. ..+..+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777788888777777654 233 333442 233335667788888777776554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=3.1e-06 Score=70.64 Aligned_cols=113 Identities=3% Similarity=-0.188 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHH
Q 004733 588 DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFS 665 (733)
Q Consensus 588 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 665 (733)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666777777777777777777655 12235566677777777777777777776654 3334556777778
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCC-----CchHHHHHHHHHH
Q 004733 666 ACAAHGNLRLGRIIAGLLLEREQD-----KPSVYVLLSNIYA 702 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 702 (733)
++...|++++|+..++++.+..|+ +..+...+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888877 5555555555433
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.37 E-value=1.8e-06 Score=71.91 Aligned_cols=62 Identities=16% Similarity=-0.020 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhcc-------CCCCchHH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLER-------EQDKPSVY----VLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
.|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6677777777888888888888888888 99998888 99999999999999999999887664
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=4.2e-06 Score=75.51 Aligned_cols=154 Identities=15% Similarity=0.007 Sum_probs=94.5
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-CHHHHHHHHHHHhccCCHH
Q 004733 534 KCGDLDCSLR---VFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGR---IKP-DQATFTAVLSACSHAGLVD 606 (733)
Q Consensus 534 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~p-~~~~~~~ll~~~~~~~~~~ 606 (733)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+... ..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 44332222345666777777777888888877777665210 111 1234666666777788888
Q ss_pred HHHHHHHHhHhhcCCCC-C----chHHHHHHHHhhhcCChHHHHHHHHhcC----CCCCh----hhHHHHHHHHHhhCCH
Q 004733 607 DGTRIFDSMVNDYGFIP-A----EDHLSCMLDLLGRAGYLDEAERVINSQH----IQARS----DNWWALFSACAAHGNL 673 (733)
Q Consensus 607 ~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~ 673 (733)
+|...+++..+...-.+ + ...+..+..++...|++++|...+++.. ..++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888777765422122 1 2346667777788888888887776543 11221 1245666777888888
Q ss_pred HHHHHHHHHHhccC
Q 004733 674 RLGRIIAGLLLERE 687 (733)
Q Consensus 674 ~~A~~~~~~~~~~~ 687 (733)
++|...++++.+..
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877653
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=7e-05 Score=72.07 Aligned_cols=178 Identities=11% Similarity=0.026 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCC---ChhhHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHH------
Q 004733 538 LDCSLRVFNMMIEK---DTISWNALISAYAQH-G-EGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVD------ 606 (733)
Q Consensus 538 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~------ 606 (733)
+++++++++.+... +..+|+.-...+.+. + ++++++++++++.+.. +.|..+|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhh
Confidence 55555555555422 233444444344333 4 5566666666665532 223344443333333333333
Q ss_pred --HHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCC-------hHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCH--
Q 004733 607 --DGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGY-------LDEAERVINSQH-IQAR-SDNWWALFSACAAHGNL-- 673 (733)
Q Consensus 607 --~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~-- 673 (733)
++++.++++++. -.-+...|+....++.+.++ ++++++.++++. ..|+ ...|.-+-+.+.+.|..
T Consensus 183 ~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc
Confidence 566666666554 12233445544445444443 455555555443 3333 33444444444443332
Q ss_pred ------------------HHHHHHHHHHhccC------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 674 ------------------RLGRIIAGLLLERE------QDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 674 ------------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.........+.... +..+.++..|+.+|...|+.++|.++++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22233333332222 56677889999999999999999999999864
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=3.1e-06 Score=87.12 Aligned_cols=94 Identities=10% Similarity=-0.077 Sum_probs=73.8
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..+|...|++++|+..++++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567778888888888888888888765 34456678888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHH
Q 004733 703 AAGLWEEAAN-IRELLK 718 (733)
Q Consensus 703 ~~g~~~~A~~-~~~~~~ 718 (733)
..|++++|.+ .++.|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988775 344443
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.34 E-value=6.1e-07 Score=72.61 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=47.8
Q ss_pred cCChHHHHHHHHhcC-C---CCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 638 AGYLDEAERVINSQH-I---QAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~-~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
.|++++|+..+++.. . .|+ ...+..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455555555555544 2 122 22445555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q 004733 713 IRELLKRT 720 (733)
Q Consensus 713 ~~~~~~~~ 720 (733)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666553
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=1.6e-06 Score=85.23 Aligned_cols=152 Identities=11% Similarity=-0.034 Sum_probs=83.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 553 TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
...+..+...+.+.|++++|+..|++..+ ..|+... +...|+.+++...+. ...+..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 34566667777788889999998888887 4465442 223344444332221 13677888
Q ss_pred HHhhhcCChHHHHHHHHhcC-C-CCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH-hcCChHH
Q 004733 633 DLLGRAGYLDEAERVINSQH-I-QARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA-AAGLWEE 709 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~ 709 (733)
.+|.+.|++++|+..+++.. . +.+...+..+..++...|++++|+..++++++++|+++.++..|+.+.. ..+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765 3 3456688899999999999999999999999999999999999988744 4578888
Q ss_pred HHHHHHHHHhCCCcCC
Q 004733 710 AANIRELLKRTGVIKQ 725 (733)
Q Consensus 710 A~~~~~~~~~~~~~~~ 725 (733)
+...+++|.+......
T Consensus 318 a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHhhCCCCCCC
Confidence 8999998887655443
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=2.6e-06 Score=70.30 Aligned_cols=109 Identities=6% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-C----CCC----hhhH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-I----QAR----SDNW 660 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~ 660 (733)
..+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++.. . .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34556666667777777777777777655 22344556666666666777777766666543 1 111 3445
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIY 701 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 701 (733)
..+..++...|++++|...++++.+..| ++.....+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 5556666666666666666666666665 655555555443
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=6.7e-07 Score=80.55 Aligned_cols=65 Identities=12% Similarity=-0.027 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 658 DNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 658 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..+..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 56777888899999999999999999999999999999999999999999999999999887643
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=1.9e-06 Score=89.19 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=90.7
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCH
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNL 673 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 673 (733)
..+.+.|++++|.+.+++..+. .| +...+..+..+|.+.|++++|++.+++.. ..| +...+..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456677888888888888765 34 35677778888888888888888887655 344 455778888889999999
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHH--HHhcCChHHHHHHHH
Q 004733 674 RLGRIIAGLLLEREQDKPSVYVLLSNI--YAAAGLWEEAANIRE 715 (733)
Q Consensus 674 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 715 (733)
++|+..++++++..|+++..+..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888 888999999999988
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=2.9e-06 Score=73.32 Aligned_cols=102 Identities=13% Similarity=0.007 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcC-----CCCC-----------chHHHHHHHHhhhcCChHHHHHHHHhcC-
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYG-----FIPA-----------EDHLSCMLDLLGRAGYLDEAERVINSQH- 652 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-----~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 652 (733)
..+......+.+.|++++|+..|++.+.... -.|+ ...+..+..+|.+.|++++|+..+++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3466666677777888888888877765300 0111 1233444444444444444444444333
Q ss_pred -CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 653 -IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 653 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
.+.+...+..+..++...|++++|+..++++++++|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 122233344444444444444444444444444444444
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.27 E-value=1.7e-05 Score=65.17 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=66.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c---hHHHHHHHHhhhcCChHHHHHHHHhcC-CCCC----hhhHHHHHH
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYGFIPA-E---DHLSCMLDLLGRAGYLDEAERVINSQH-IQAR----SDNWWALFS 665 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~ 665 (733)
+...+...|++++|...++.+.+. .|+ . ..+..+..++.+.|++++|...++++. ..|+ +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666654 222 2 355556666666666666666666544 2233 345666777
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 666 ACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 666 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
++...|++++|...++++.+..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 78888889999999999999888887766655543
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=6.7e-06 Score=78.50 Aligned_cols=110 Identities=3% Similarity=-0.153 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHH
Q 004733 588 DQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALF 664 (733)
Q Consensus 588 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 664 (733)
+...+..+...+...|++++|...|++..+. .| +...+..+..+|.+.|++++|...+++.. ..| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4456677777788888888888888888765 34 45677778888888888888888887755 444 345667777
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 665 SACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 665 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
.++...|++++|+..++++.+++|+++..+...++.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 115 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHH
Confidence 778888888888888888888887765444433333
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.2e-05 Score=82.65 Aligned_cols=190 Identities=8% Similarity=-0.071 Sum_probs=131.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-----C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH
Q 004733 530 TLYAKCGDLDCSLRVFNMMIEK-----D---------------TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ 589 (733)
Q Consensus 530 ~~~~~~~~~~~A~~~~~~~~~~-----~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~ 589 (733)
..+.+.|++++|.+.|..+.+. + ...+..++..|...|++++|.+.+.++.+.-...++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455667777777777766421 0 0135678888999999999999998876532011222
Q ss_pred H----HHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC-------CC
Q 004733 590 A----TFTAVLSACSHAGLVDDGTRIFDSMVNDY---GFIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH-------IQ 654 (733)
Q Consensus 590 ~----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 654 (733)
. ..+.+-..+...|+++.|..+++...... +..+. ..++..++..|...|++++|..+++++. ..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 23333345567789999999988876531 22222 3467788999999999999999988644 12
Q ss_pred CC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccC---CCC----chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 655 AR-SDNWWALFSACAAHGNLRLGRIIAGLLLERE---QDK----PSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 655 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+. ...+...+..|...|++++|...++++.... +++ ..++..++..+...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2356778888999999999999999988754 332 24566778888889999999998877754
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=4.1e-06 Score=72.25 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=75.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHhcC----CCCC----hhh
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINSQH----IQAR----SDN 659 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~ 659 (733)
+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444445555555555555554432110011 1244445555555666666655555432 1111 224
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCC------CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQ------DKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
+..+...+...|++++|...++++.+..+ ..+..+..++.+|...|++++|.+++++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55566667778888888888887776532 12456888999999999999999999887653
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=7.2e-06 Score=66.50 Aligned_cols=95 Identities=9% Similarity=-0.034 Sum_probs=55.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhh
Q 004733 594 AVLSACSHAGLVDDGTRIFDSMVNDYGFIP-AEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAH 670 (733)
Q Consensus 594 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 670 (733)
.+...+.+.|++++|...+++..+. .| +...+..+..++...|++++|+..+++.. ..| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444555666666666666666654 23 34455566666666666666666666544 333 344566667777777
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 004733 671 GNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 671 g~~~~A~~~~~~~~~~~p~~~ 691 (733)
|++++|+..++++++.+|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 777777777887777777654
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=8.3e-05 Score=71.24 Aligned_cols=189 Identities=10% Similarity=0.057 Sum_probs=132.9
Q ss_pred hcCCH-HHHHHHHHhcCCCCh---hhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 004733 534 KCGDL-DCSLRVFNMMIEKDT---ISWNALISAYAQHGE----------GKEAVSCFKAMQDVGRIKPDQATFTAVLSAC 599 (733)
Q Consensus 534 ~~~~~-~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~ 599 (733)
+.|.+ ++|+.+++.+..-++ ..|+.--..+...+. +++++.+++.+.... +.+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34444 478888888875443 344443223322222 678889999988854 44666777666666
Q ss_pred hccC--CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCC-hHHHHHHHHhcC--CCCChhhHHHHHHHHHhh----
Q 004733 600 SHAG--LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGY-LDEAERVINSQH--IQARSDNWWALFSACAAH---- 670 (733)
Q Consensus 600 ~~~~--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---- 670 (733)
...+ .+++++.+++.+.+. -+-+...|+.-..++...|. ++++++.++++. .+-+...|......+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 6666 488999999999876 23355677766667777787 588888888766 344455676665555544
Q ss_pred ----------CCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCcCCCccc
Q 004733 671 ----------GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA-----------GLWEEAANIRELLKRTGVIKQPGCS 729 (733)
Q Consensus 671 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~ 729 (733)
+.+++++..+++++..+|+|.++|+.+..++... +.++++++.++++.+.. |.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~----pd~~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE----PENK 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC----TTCH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC----cccc
Confidence 4578999999999999999999999888777776 46889999999998754 4556
Q ss_pred c
Q 004733 730 W 730 (733)
Q Consensus 730 ~ 730 (733)
|
T Consensus 273 w 273 (331)
T 3dss_A 273 W 273 (331)
T ss_dssp H
T ss_pred h
Confidence 6
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=7e-06 Score=67.66 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-------chHHHHHH
Q 004733 628 LSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK-------PSVYVLLS 698 (733)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~ 698 (733)
+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|++ +.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 3344444444555555555444433 22233344444444445555555555555555544433 44444455
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 004733 699 NIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.+|...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555554444
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.21 E-value=6.1e-06 Score=82.00 Aligned_cols=89 Identities=4% Similarity=-0.115 Sum_probs=76.2
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA 702 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 702 (733)
...+..+..+|.+.|++++|++.++++. ..| +...+..+..++...|++++|+..+++++++.|+++.++..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567778888888999999998888765 444 45678888889999999999999999999999999999999999999
Q ss_pred hcCChHHHHHH
Q 004733 703 AAGLWEEAANI 713 (733)
Q Consensus 703 ~~g~~~~A~~~ 713 (733)
..|+.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99988887663
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.20 E-value=1.5e-05 Score=78.35 Aligned_cols=127 Identities=9% Similarity=-0.059 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 004733 554 ISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----------------ATFTAVLSACSHAGLVDDGTRIFDSMVN 617 (733)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 617 (733)
..|..+...+.+.|++++|+..|++.++.. |+. ..|..+..+|.+.|++++|+..++++++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566666777777777777777777633 432 5666777777777777777777777776
Q ss_pred hcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhhCCHHHH-HHHHHHHhc
Q 004733 618 DYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA-RSDNWWALFSACAAHGNLRLG-RIIAGLLLE 685 (733)
Q Consensus 618 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 685 (733)
. .+.+...+..+..+|...|++++|+..|+++. ..| +...+..+..++...|+.++| ...++++.+
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 22345567777777777777777777777655 333 344566666667777777766 345555443
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=9e-06 Score=64.77 Aligned_cols=98 Identities=13% Similarity=-0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCC---ChhhHHHHHHHH
Q 004733 592 FTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQA---RSDNWWALFSAC 667 (733)
Q Consensus 592 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 667 (733)
+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++.. ..| +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 333444444444555555554444433 11223344444444555555555555544433 222 234455555555
Q ss_pred Hhh-CCHHHHHHHHHHHhccCCCCc
Q 004733 668 AAH-GNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 668 ~~~-g~~~~A~~~~~~~~~~~p~~~ 691 (733)
... |++++|+..++++.+..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 556 666666666666666665543
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.0004 Score=66.48 Aligned_cols=181 Identities=10% Similarity=0.042 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC-HHHHHHH
Q 004733 538 LDCSLRVFNMMIE---KDTISWNALISAYAQHG--EGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGL-VDDGTRI 611 (733)
Q Consensus 538 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~A~~~ 611 (733)
+++++.+++.+.. ++..+|+.-.-.+...+ ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4556666665542 34455655555555555 3677777777777754 3455556555555555565 4777777
Q ss_pred HHHhHhhcCCCCCchHHHHHHHHhhhc--------------CChHHHHHHHHhcC-CCCChh-hHHHHHHHHHhh-----
Q 004733 612 FDSMVNDYGFIPAEDHLSCMLDLLGRA--------------GYLDEAERVINSQH-IQARSD-NWWALFSACAAH----- 670 (733)
Q Consensus 612 ~~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~----- 670 (733)
++.+++. .+-+...|+....++.+. +.++++++.+.+.. ..|+.. .|.-+-+.+...
T Consensus 168 ~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 7777765 222344455444444333 34667777776655 444443 444333333333
Q ss_pred ------CCHHHHHHHHHHHhccCCCCchHHHHHHHHHH---hcCChHHHHHHHHHHHhCCC
Q 004733 671 ------GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYA---AAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 671 ------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~ 722 (733)
+-+++++..++++.+..|++.-.+..++.... ..|..++....+.++++.++
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 34678888888888888887554444433221 35777788888888876544
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=1.5e-05 Score=65.30 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 618 (733)
.+..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.+++.++.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3445566666666666666666666663 333 445566666666666666666666666543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=2e-06 Score=69.45 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHHHhHhhcCC-CC-CchHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGF-IP-AEDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGR 677 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 677 (733)
.|++++|+..|++.++. +. .| +...+..+..+|...|++++|+..+++.. .+.++..+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666665532 10 12 23355556666666666666666666544 2333456667777788888888888
Q ss_pred HHHHHHhccCCCCchHHHHH
Q 004733 678 IIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 678 ~~~~~~~~~~p~~~~~~~~l 697 (733)
..++++++..|+++......
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 88888888888887765433
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=1.3e-05 Score=82.08 Aligned_cols=124 Identities=9% Similarity=0.029 Sum_probs=77.4
Q ss_pred hccCCHHHHHHHHHHhHhhc----C-CCCC-chHHHHHHHHhhhcCChHHHHHHHHhcC---------CCCChh-hHHHH
Q 004733 600 SHAGLVDDGTRIFDSMVNDY----G-FIPA-EDHLSCMLDLLGRAGYLDEAERVINSQH---------IQARSD-NWWAL 663 (733)
Q Consensus 600 ~~~~~~~~A~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~l 663 (733)
..+|++++|..++++.++.. | -.|+ ..+++.|..+|...|++++|..++++.. ..|+.. +++.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34555555555555554331 1 0111 2345556666666666666665555422 222222 45667
Q ss_pred HHHHHhhCCHHHHHHHHHHHhc-----cCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 664 FSACAAHGNLRLGRIIAGLLLE-----REQDKPSV---YVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
...|...|++++|+.+++++++ ++|++|.+ ...|..++..+|++++|...+.++++.-..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777888888887777776 56776654 567888888999999999999998875433
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=0.0018 Score=62.25 Aligned_cols=229 Identities=10% Similarity=0.035 Sum_probs=142.2
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhhHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHH
Q 004733 432 AKNERIKQAYQIFHNMS---PRNIITWNTLINGFLLNG-FPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGK 507 (733)
Q Consensus 432 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 507 (733)
.+.+..++|+++++.+. +.+..+|+.--..+...| .+++++..++.++... |.
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PK--------------------- 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LK--------------------- 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CC---------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CC---------------------
Confidence 33444456666666554 333445555555555555 3666666666666543 22
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhc-C-CHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCChH--------HHHH
Q 004733 508 QIHGYVLKNNLISKMSLGNAMITLYAKC-G-DLDCSLRVFNMMIEKD---TISWNALISAYAQHGEGK--------EAVS 574 (733)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~A~~ 574 (733)
+..+|+.-...+.+. + ++++++++++.+.+.+ ...|+.-.-.+.+.|.++ ++++
T Consensus 122 -------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 122 -------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp -------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 222333333333333 4 6788888888887644 445555444444545555 8999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCCh------
Q 004733 575 CFKAMQDVGRIKPDQATFTAVLSACSHAGL-------VDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYL------ 641 (733)
Q Consensus 575 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~------ 641 (733)
.++++++.. +-|...|+.....+.+.+. ++++++.+++++.. .+-|...|+.+-..+.+.|+.
T Consensus 189 ~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 189 WCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 999999865 4566778777777777665 68899999888865 233455676666667666653
Q ss_pred --------------HHHHHHHHhcCC--------CCChhhHHHHHHHHHhhCCHHHHHHHHHHHh-ccCCCCchHHHHHH
Q 004733 642 --------------DEAERVINSQHI--------QARSDNWWALFSACAAHGNLRLGRIIAGLLL-EREQDKPSVYVLLS 698 (733)
Q Consensus 642 --------------~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 698 (733)
.+..++...+.. .+.+..+..++..|...|+.++|..+++.+. +.+|-....|...+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 344444444441 2455567888889999999999999999987 67888777777665
Q ss_pred HH
Q 004733 699 NI 700 (733)
Q Consensus 699 ~~ 700 (733)
..
T Consensus 345 ~~ 346 (349)
T 3q7a_A 345 RE 346 (349)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.4e-06 Score=69.66 Aligned_cols=91 Identities=11% Similarity=-0.054 Sum_probs=72.8
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------chHHHH
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK------PSVYVL 696 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~ 696 (733)
...+..+...+.+.|++++|.+.+++.. .+.++..+..+..++...|++++|+..++++++.+|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4456667777778888888888777655 33456677888888999999999999999999999998 778888
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 004733 697 LSNIYAAAGLWEEAANIRE 715 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~ 715 (733)
++.++...|++++|.+.++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 9999998888887776654
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.10 E-value=1.6e-05 Score=61.88 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
.++..+..+..++...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345577888888999999999999999999999999999999999999999999999999887754
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=1.4e-05 Score=69.06 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
.+..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44445555555555555555555555555555555555555555555555555555555543
No 189
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.07 E-value=2.5e-05 Score=59.17 Aligned_cols=73 Identities=12% Similarity=-0.035 Sum_probs=62.9
Q ss_pred CCChhhHHHHHHHHHhhCC---HHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcCCCc
Q 004733 654 QARSDNWWALFSACAAHGN---LRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIKQPG 727 (733)
Q Consensus 654 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 727 (733)
++++..+..+..++...++ .++|..+++++++.+|+++.....++..+...|++++|+.+|+++.+..+. .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4566677778888765554 689999999999999999999999999999999999999999999998765 543
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=0.00014 Score=76.46 Aligned_cols=171 Identities=8% Similarity=-0.047 Sum_probs=133.0
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 535 CGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGE----------GKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 535 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
....++|.+.++.+.. | +...|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3445678898888874 3 34567666666666666 899999999999865 4456778887778888
Q ss_pred cC--CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC-ChHHHHHHHHhcC-CCC-ChhhHHHHHHHHHhh------
Q 004733 602 AG--LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG-YLDEAERVINSQH-IQA-RSDNWWALFSACAAH------ 670 (733)
Q Consensus 602 ~~--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------ 670 (733)
.+ +++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++. ..| +...|......+...
T Consensus 120 l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 88 779999999999987 2335667777777788888 8999999998877 445 455676666665552
Q ss_pred --------CCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHH
Q 004733 671 --------GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEE 709 (733)
Q Consensus 671 --------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 709 (733)
+.++++++.++++...+|++..+|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888554
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.8e-05 Score=78.87 Aligned_cols=160 Identities=9% Similarity=-0.008 Sum_probs=120.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 004733 560 ISAYAQHGEGKEAVSCFKAMQDVGRIKPD---------------QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA 624 (733)
Q Consensus 560 ~~~~~~~~~~~~A~~~~~~~~~~~~~~p~---------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 624 (733)
...+.+.|++++|++.|.++.+...-..+ ...+..+...|...|++++|.+.+..+....+-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567789999999999999885411111 124677888999999999999999999875333333
Q ss_pred ch----HHHHHHHHhhhcCChHHHHHHHHhcC-------CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhcc------
Q 004733 625 ED----HLSCMLDLLGRAGYLDEAERVINSQH-------IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLER------ 686 (733)
Q Consensus 625 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 686 (733)
.. +.+.+...+...|++++|..+++... ..+. ...+..+...+...|++++|...++.+...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 33445556667889999999887643 2222 446778889999999999999999998774
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 687 EQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 687 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.|....++..++.+|...|++++|..++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 233346788999999999999999999988765
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=1.6e-05 Score=63.80 Aligned_cols=63 Identities=13% Similarity=-0.022 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 657 SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 657 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666666666666666666666665544
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=5.8e-06 Score=68.74 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCCC
Q 004733 673 LRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAG-----------LWEEAANIRELLKRTGV 722 (733)
Q Consensus 673 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 722 (733)
+++|+..++++++++|+++.+|+.++.+|...| ++++|++.|++..+..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 568888888899999998888888998888774 78888888888887644
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.01 E-value=1.5e-05 Score=66.44 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC-C-------CCCh-hhH----HHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH-I-------QARS-DNW----WALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.|..+..++.+.|++++|+..+++.. . .|+. ..| .....++...|++++|+..+++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 55666666666666666666665543 3 6654 367 788889999999999999999999999999887
Q ss_pred HHHHHH
Q 004733 694 YVLLSN 699 (733)
Q Consensus 694 ~~~l~~ 699 (733)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 665543
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2.5e-05 Score=67.20 Aligned_cols=134 Identities=13% Similarity=0.056 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----ch
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ----ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA----ED 626 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~ 626 (733)
++..+...+...|++++|+..+++..+...-.++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34555566666677777777666665421000111 24555666667777777777777776543111111 23
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC----CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH----IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 688 (733)
.+..+..++...|++++|.+.+++.. ..++ ...+..+...+...|++++|...++++.+...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45566677777777777777766543 1111 22456667778888888888888888876543
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=2e-05 Score=77.42 Aligned_cols=153 Identities=8% Similarity=0.006 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 004733 522 MSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSH 601 (733)
Q Consensus 522 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 601 (733)
...+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..+|.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~-----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK-----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH-----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34566777888899999999999998763222111 1122233333322111 1356677778888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh-hHHHHHHH-HHhhCCHHHHHH
Q 004733 602 AGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD-NWWALFSA-CAAHGNLRLGRI 678 (733)
Q Consensus 602 ~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~-~~~~g~~~~A~~ 678 (733)
.|++++|+..+++.++. .+.+...+..+..+|...|++++|...|++.. ..|+.. .+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765 22345677888888888888888888888766 455443 34444444 234566778888
Q ss_pred HHHHHhccCCCCch
Q 004733 679 IAGLLLEREQDKPS 692 (733)
Q Consensus 679 ~~~~~~~~~p~~~~ 692 (733)
.++++++..|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 88888888887653
No 197
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=3.1e-05 Score=79.98 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHH
Q 004733 532 YAKCGDLDCSLRVFNMMIE--K-DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDG 608 (733)
Q Consensus 532 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A 608 (733)
+.+.|++++|.+.|++..+ | +...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4445555555555555432 2 34455555555555555555555555555532 12234455555555555555555
Q ss_pred HHHHHHhHhhcCCCCC-chHHHHHHHH--hhhcCChHHHHHHHH
Q 004733 609 TRIFDSMVNDYGFIPA-EDHLSCMLDL--LGRAGYLDEAERVIN 649 (733)
Q Consensus 609 ~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 649 (733)
.+.++++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555544 221 2233333333 445555555555554
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=4.9e-05 Score=57.70 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=53.4
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 004733 626 DHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA 703 (733)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 703 (733)
..+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|+..++++.+.+|+++.++..++.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 344555556666666666666665543 223344566667777777888888888888888888888888777777766
Q ss_pred cC
Q 004733 704 AG 705 (733)
Q Consensus 704 ~g 705 (733)
.|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=6e-05 Score=62.64 Aligned_cols=111 Identities=8% Similarity=-0.101 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHHH
Q 004733 604 LVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRII 679 (733)
Q Consensus 604 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 679 (733)
++++|.+.|++..+. | .|. .. +..+|...+..++|.+.+++.....++.....+...|.. .+|+++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666666554 3 222 22 555555555566666666655544555566666666665 6778888888
Q ss_pred HHHHhccCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 004733 680 AGLLLEREQDKPSVYVLLSNIYAA----AGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 680 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 722 (733)
++++.+. .++..+..|+.+|.. .++.++|.+++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887766 567778888888888 7888888888888877764
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=4.1e-05 Score=78.74 Aligned_cols=134 Identities=10% Similarity=-0.052 Sum_probs=90.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHH
Q 004733 568 EGKEAVSCFKAMQDVGRIKPD-QATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAER 646 (733)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 646 (733)
++++|...|+...+ ..|+ ...+..+...|.+.|++++|...|++.++. .|+...+ ..+...+
T Consensus 249 ~~~~A~~~~~~~~~---~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~-----------~~~~~~~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTK---EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW---LEMEYGL-----------SEKESKA 311 (457)
T ss_dssp EEECCCCGGGSCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTCCSC-----------CHHHHHH
T ss_pred hcccCcchhhcCHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccC-----------ChHHHHH
Confidence 34445444444333 1233 334666666677777777777777777654 2221100 0001100
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 647 VINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 647 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
. . .-....|..+..++.+.|++++|+..++++++++|+++.+|+.++.+|...|++++|+..|++..+..+.
T Consensus 312 ~-~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 S-E----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp H-H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred H-H----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0 0 0113567788889999999999999999999999999999999999999999999999999999886543
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=5.6e-05 Score=75.04 Aligned_cols=114 Identities=4% Similarity=-0.052 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCC-ChhhHHHHHHHHH
Q 004733 590 ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQA-RSDNWWALFSACA 668 (733)
Q Consensus 590 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 668 (733)
..+..+...+.+.|++++|+..|++.++. .+... .....+++.. ..| +...+..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34666666777778888888888777653 11100 0001111111 122 3456788888999
Q ss_pred hhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 669 AHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+.|++++|+..++++++.+|+++.++..++.+|...|++++|++.|++..+...
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999987643
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.00047 Score=72.54 Aligned_cols=153 Identities=10% Similarity=-0.036 Sum_probs=122.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 004733 566 HGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGL----------VDDGTRIFDSMVNDYGFIPAEDHLSCMLDL 634 (733)
Q Consensus 566 ~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 634 (733)
....++|++.++++.+. .|+. ..|+.--.++...|+ ++++++.++.+.+. .+-+...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34557889999999994 5665 457665556655566 89999999999976 23345577777778
Q ss_pred hhhcC--ChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhC-CHHHHHHHHHHHhccCCCCchHHHHHHHHHHhc-----
Q 004733 635 LGRAG--YLDEAERVINSQH--IQARSDNWWALFSACAAHG-NLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAA----- 704 (733)
Q Consensus 635 ~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 704 (733)
+.+.| +++++++.++++. .+.+...|..-...+...| .++++.+.++++.+.+|.+.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88888 6799999999877 4445667887778888888 899999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHHHhCCCc
Q 004733 705 ---------GLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 705 ---------g~~~~A~~~~~~~~~~~~~ 723 (733)
+++++|++++++.....+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999988876543
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.7e-05 Score=58.85 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 656 RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 656 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45567788888999999999999999999999999999999999999999999999999999876543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00015 Score=54.90 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 657 SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 657 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
...+..+...+...|++++|+..++++.+..|+++.++..++.+|...|++++|...+++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 446777888899999999999999999999999999999999999999999999999999987643
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.54 E-value=0.0011 Score=54.88 Aligned_cols=112 Identities=8% Similarity=-0.088 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhh----cCChH
Q 004733 567 GEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGR----AGYLD 642 (733)
Q Consensus 567 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 642 (733)
+++++|+++|++..+.| .|+.. +...|...+.+++|.+.|++..+. | ++.....|..+|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHH
Confidence 46788999999998877 44443 666777777888899999998876 3 56677778888877 78999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHh----hCCHHHHHHHHHHHhccCC
Q 004733 643 EAERVINSQHIQARSDNWWALFSACAA----HGNLRLGRIIAGLLLEREQ 688 (733)
Q Consensus 643 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 688 (733)
+|.+.+++.....++.....+...|.. .+|+++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999887755677778888888887 8899999999999988753
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.52 E-value=0.00018 Score=59.83 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=69.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 004733 564 AQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLV----------DDGTRIFDSMVNDYGFIPA-EDHLSCML 632 (733)
Q Consensus 564 ~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~l~ 632 (733)
.+.+.+++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++.++. .|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence 34556666777777766643 23445565566666655543 3555555555543 333 33444555
Q ss_pred HHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHH
Q 004733 633 DLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
.+|...|++ .|+.. ...|++++|+..++++++++|++......+- ..++|.+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 555444432 12211 1126899999999999999999865544443 2344555
Q ss_pred HHHHHHhC
Q 004733 713 IRELLKRT 720 (733)
Q Consensus 713 ~~~~~~~~ 720 (733)
+.-++...
T Consensus 140 l~~~~~~~ 147 (158)
T 1zu2_A 140 LHAEAYKQ 147 (158)
T ss_dssp HHHHHHHS
T ss_pred ccCccccc
Confidence 55444443
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=0.00019 Score=55.42 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=54.4
Q ss_pred HHHHhhhcCChHHHHHHHHhcC-CCC-Chh-hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCCh
Q 004733 631 MLDLLGRAGYLDEAERVINSQH-IQA-RSD-NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLW 707 (733)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 707 (733)
....+.+.|++++|...+++.. ..| +.. .+..+..++...|++++|+..++++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3456667777777777777655 333 445 66777777888888888888888888888888876632 445
Q ss_pred HHHHHHHHH
Q 004733 708 EEAANIREL 716 (733)
Q Consensus 708 ~~A~~~~~~ 716 (733)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555665543
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.51 E-value=0.00051 Score=54.76 Aligned_cols=65 Identities=14% Similarity=-0.061 Sum_probs=35.6
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH--IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
...+..+..++...|++++|+..+++.. .+.+...+..+..++...|++++|+..++++.+..|.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3344445555555555555555554433 2223345555666666666666666666666666553
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.48 E-value=0.0002 Score=55.36 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCch-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 004733 663 LFSACAAHGNLRLGRIIAGLLLEREQDKPS-VYVLLSNIYAAAGLWEEAANIRELLKRTGVI 723 (733)
Q Consensus 663 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 723 (733)
....+...|++++|+..++++.+.+|+++. ++..++.+|...|++++|++.|++..+..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 456678999999999999999999999999 9999999999999999999999999886543
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00048 Score=70.55 Aligned_cols=86 Identities=7% Similarity=-0.098 Sum_probs=70.0
Q ss_pred HhhhcCChHHHHHHHHhcC------C---CCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCch---HHH
Q 004733 634 LLGRAGYLDEAERVINSQH------I---QAR-SDNWWALFSACAAHGNLRLGRIIAGLLLE-----REQDKPS---VYV 695 (733)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~------~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~ 695 (733)
.+..+|++++|+.++++.. . .|+ ..+++.+..+|...|++++|+.+++++++ +.|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999998887543 2 232 23578889999999999999999999988 4566654 588
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 004733 696 LLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 696 ~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
.|+.+|..+|++++|+.++++..+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.40 E-value=0.00049 Score=69.18 Aligned_cols=61 Identities=7% Similarity=0.022 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLE-----REQDKP---SVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+++.+..+|...|++++|+.+++++++ +.|++| ..+..|+.+|..+|++++|+.++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456667777777777777777777766 345555 4588899999999999999999987765
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.40 E-value=3.5e-05 Score=74.97 Aligned_cols=419 Identities=11% Similarity=0.044 Sum_probs=249.0
Q ss_pred chhhHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHH
Q 004733 20 LLLKLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTIL 99 (733)
Q Consensus 20 ~~~~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 99 (733)
....|..+.++..+.+...+|++.|-+. -|+..|..++.++.+.|.++.-.+.+.+..+... ++.+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 3457888999999999999998776533 5777889999999999999999988877765533 446667999
Q ss_pred HHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCC------------------------CChh
Q 004733 100 SLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPD------------------------RDLP 155 (733)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~ 155 (733)
.+|++.+++.+.++++.. |+..-...+..-|-..|.++.|.-+|..+.. .++.
T Consensus 124 ~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 124 FALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp HHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred HHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 999999998887666553 6666666777777788888888888776652 3667
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhH
Q 004733 156 VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYF 234 (733)
Q Consensus 156 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 234 (733)
+|..+-.+|...+.+.-|.-.--.+.- .+.....++..+ ..|.+++-..+++.-+.. -.....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 899999999999998887665444432 222333456667 889999999988887632 2456788888888887
Q ss_pred hcCChHHHHHHHHhhh---cCC------CCccchHHHHHHHHhcCChHHHHHHHHHHHHc-------C-------CCCCh
Q 004733 235 NCGNVVDACKVFEEAK---GYV------CDHISYNVMMDGLASVGRVEEALIRFRDMLVA-------S-------LRPSE 291 (733)
Q Consensus 235 ~~~~~~~a~~~~~~~~---~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~-------~~p~~ 291 (733)
+- +.++..+.++..- .++ -....|.-++-.|.+-.+++.|... |.++ + -..|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchH
Confidence 76 3344444443211 110 1345577777777777777766543 2111 0 02333
Q ss_pred hhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHh-------------cccCCcccHH
Q 004733 292 LTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFAR-------------LQEKDIVSWN 358 (733)
Q Consensus 292 ~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-------------~~~~~~~~~~ 358 (733)
..|-..|.-+. .-.+...+.|+..+...=|...+.++|++ +...|...-|
T Consensus 351 EiyYKAi~FYL-----------------~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVN 413 (624)
T 3lvg_A 351 ELYYRAIQFYL-----------------EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVN 413 (624)
T ss_dssp HHHHHHHHHHT-----------------TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHH
T ss_pred HHHHHHHHHHH-----------------HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHH
Confidence 34433333332 22233334444444333344444444443 3333443333
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCH
Q 004733 359 -TMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERI 437 (733)
Q Consensus 359 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (733)
++-..|....+++.- +.-.+.--..|...+..-+... +-...-..-...|.+.+++
T Consensus 414 eAln~L~IEEEDy~~L----R~SId~ydNFD~i~LA~rLEkH-------------------eL~eFRrIAA~LYkkn~rw 470 (624)
T 3lvg_A 414 ESLNNLFITEEDYQAL----RTSIDAYDNFDNISLAQRLEKH-------------------ELIEFRRIAAYLFKGNNRW 470 (624)
T ss_dssp HHHHHHHHHTTCCHHH----HHTTSSCCCSCTTHHHHHHHTC-------------------SSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhhhhHHHH----HHHHHHhccccHHHHHHHHhhC-------------------chHHHHHHHHHHHHhcccH
Confidence 333455555555432 2222222233333332222110 0111112334456777777
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHH
Q 004733 438 KQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQ 508 (733)
Q Consensus 438 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 508 (733)
+++..+.++=. .|.-.|...+..|+.+-+.++++-..+.| +...|...+-.|...=+++-+.+
T Consensus 471 ~qsi~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 471 KQSVELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHSSCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHHHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 77766554322 22223334455677777777777777655 34456666666666655555544
No 213
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.32 E-value=0.2 Score=52.64 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=118.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChH
Q 004733 425 NALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLR 504 (733)
Q Consensus 425 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 504 (733)
+.-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+=..| ...+.....++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 5566777788889888887766 45555555667777888888877777777665554 222333445555555444332
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---------------------------CCChhh--
Q 004733 505 HGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI---------------------------EKDTIS-- 555 (733)
Q Consensus 505 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------------------~~~~~~-- 555 (733)
.. .++.-+ ......|+...|..+...+. .++...
T Consensus 154 ~~----------------~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~ 216 (618)
T 1qsa_A 154 PL----------------AYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQ 216 (618)
T ss_dssp HH----------------HHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHH
T ss_pred HH----------------HHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHH
Confidence 21 111111 22222233333333333321 111110
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 004733 556 -WNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA--TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCML 632 (733)
Q Consensus 556 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 632 (733)
+...+.-+.+ ++.+.|...|....+...+.+... ....+.......+...++...+...... .++.....-.+
T Consensus 217 ~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~ 292 (618)
T 1qsa_A 217 MAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHH
Confidence 1111122222 366777777776654431222111 1222222333444344555555554332 23333333344
Q ss_pred HHhhhcCChHHHHHHHHhcCCCC-C-hhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 633 DLLGRAGYLDEAERVINSQHIQA-R-SDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
....+.|+++.|...|+.|...+ + .....-+..++...|+.++|...++.+.+
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44456677777777777776332 1 22223334455666777777777777764
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.25 E-value=7.6e-06 Score=79.50 Aligned_cols=430 Identities=10% Similarity=0.065 Sum_probs=233.7
Q ss_pred CcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhhcc
Q 004733 122 DVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVCDA 201 (733)
Q Consensus 122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 201 (733)
.+..|..|..+..+.+++.+|+..| +...|...|..+|.+..+.|.+++-+.++...++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----------------- 113 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----------------- 113 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-----------------
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----------------
Confidence 3455677777777777777776654 333455566777777777777777777766555432
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHH
Q 004733 202 GLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRD 281 (733)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 281 (733)
-++.+-+.|+-+|++.+++.+..+++ .+ ||......+.+-|...|.++.|.-+|..
T Consensus 114 -------------------ke~~IDteLi~ayAk~~rL~elEefl---~~--~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 114 -------------------RESYVETELIFALAKTNRLAELEEFI---NG--PNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp -------------------CSTTTTHHHHHHHHTSCSSSTTTSTT---SC--CSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred -------------------cccccHHHHHHHHHhhCcHHHHHHHH---cC--CCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 12233356778888888766544433 23 7777778888888888888887777665
Q ss_pred HHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHH
Q 004733 282 MLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMI 361 (733)
Q Consensus 282 m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 361 (733)
+... ..|..++.+.|++..|.+.-++. .++.+|..+-
T Consensus 170 isN~-----------------------------------------akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~ 206 (624)
T 3lvg_A 170 VSNF-----------------------------------------GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVC 206 (624)
T ss_dssp SCCC-----------------------------------------TTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHT
T ss_pred CccH-----------------------------------------HHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHH
Confidence 4322 22233345666666655432221 5778899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHH
Q 004733 362 STYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAY 441 (733)
Q Consensus 362 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 441 (733)
.+|...+++.-|.-.--.+.- .||.. ..++..|-..|-+++.+
T Consensus 207 ~ACvd~~EfrLAqicGLniIv---hadeL----------------------------------~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV---HADEL----------------------------------EELINYYQDRGYFEELI 249 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC---CSSCC----------------------------------SGGGSSSSTTCCCTTST
T ss_pred HHHhCchHHHHHHHhcchhcc---cHHHH----------------------------------HHHHHHHHhCCCHHHHH
Confidence 999999888766544333321 12211 23555677788888877
Q ss_pred HHHhhcC---CCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcC-
Q 004733 442 QIFHNMS---PRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNN- 517 (733)
Q Consensus 442 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 517 (733)
.+++.-. ......|+.|.-.|++- ++++.++.++-.-.+ .| ..-++++|.....|.++.-++..-.+.+
T Consensus 250 sLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iN---ipKviracE~ahLW~ElvfLY~~ydE~Dn 322 (624)
T 3lvg_A 250 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VN---IPKVLRAAEQAHLWAELVFLYDKYEEYDN 322 (624)
T ss_dssp TTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHHTTTTCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHHHHHhhHHHHHHHHhcchhHHH
Confidence 7777643 45566788887777776 466666655543221 11 1236677777666666544433221100
Q ss_pred -----CC--CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----
Q 004733 518 -----LI--SKMSLGNAMITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIK---- 586 (733)
Q Consensus 518 -----~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---- 586 (733)
+. ++..-...+-+...+..+.|--.+.++--.+..+...+-|+.++...=|...+.++|++.-...-++
T Consensus 323 A~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~ 402 (624)
T 3lvg_A 323 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLR 402 (624)
T ss_dssp HHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGT
T ss_pred HHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHH
Confidence 00 0000000011111122222221111111112222333445555544445555555555432111011
Q ss_pred ----CCH-HHHHHHHHHHhccCCHHHHHH------------HHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHH
Q 004733 587 ----PDQ-ATFTAVLSACSHAGLVDDGTR------------IFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVIN 649 (733)
Q Consensus 587 ----p~~-~~~~~ll~~~~~~~~~~~A~~------------~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 649 (733)
-|. ..-.++-+.|...++++.-+. +-+++.+ .+-.+.-..-...|.+.++|+++.++.+
T Consensus 403 ~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 403 SVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp SCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred HHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 122 333344456666666654433 2222222 1222333344566788888999887765
Q ss_pred h-------cC---CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 004733 650 S-------QH---IQARSDNWWALFSACAAHGNLRLGRIIAGLLLE 685 (733)
Q Consensus 650 ~-------~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 685 (733)
+ |. ...+......|+..+...|+.+--...+-.+..
T Consensus 479 kDklykDAietAa~S~~~elaeeLL~yFv~~g~~EcF~a~LytCYd 524 (624)
T 3lvg_A 479 KDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYD 524 (624)
T ss_dssp TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHHHHTSS
T ss_pred hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHhh
Confidence 3 11 456666777888888888877765554444444
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.0016 Score=65.62 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=55.4
Q ss_pred hhhcCChHHHHHHHHhcC------CCCC----hhhHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCc---hHHHH
Q 004733 635 LGRAGYLDEAERVINSQH------IQAR----SDNWWALFSACAAHGNLRLGRIIAGLLLE-----REQDKP---SVYVL 696 (733)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~---~~~~~ 696 (733)
+.+.|++++|+.++++.. ..|+ ..+++.+..+|...|++++|+.+++++++ ..|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666655422 2222 12456666677777777777777777665 345554 44778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 004733 697 LSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 697 l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
|+.+|..+|++++|+.++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888888887654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.0084 Score=57.59 Aligned_cols=143 Identities=13% Similarity=0.033 Sum_probs=79.3
Q ss_pred CChhhHHHHHHHHH--hc---CChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 004733 551 KDTISWNALISAYA--QH---GEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA 624 (733)
Q Consensus 551 ~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 624 (733)
.+...|...+++.. .. .+..+|..+|++.++ ..|+. ..|..+..+|.. . ... + |.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~----------~---~~~-~--~~ 252 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIV----------R---HSQ-H--PL 252 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH----------H---HHH-S--CC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH----------H---hcc-C--CC
Confidence 46677777766543 22 245788999999988 55774 345544444430 0 000 1 11
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHh
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAA 703 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 703 (733)
.... + . ....+.+....+. .+.++..+..+...+...|+++.|...++++++++|+ ...|..+++++..
T Consensus 253 ~~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred chhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1000 0 0 0112222222222 2334445555555556667777777777777777753 4556677777777
Q ss_pred cCChHHHHHHHHHHHhCCC
Q 004733 704 AGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 704 ~g~~~~A~~~~~~~~~~~~ 722 (733)
.|++++|.+.+++....++
T Consensus 323 ~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 7777777777777766544
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.19 E-value=0.0011 Score=51.06 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=41.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 004733 552 DTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 618 (733)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34456666666677777777777777776643 223455666666777777777777777766643
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0012 Score=54.23 Aligned_cols=93 Identities=12% Similarity=-0.058 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcC---ChHHHHHHHHhcC-CC-C--ChhhHHHHHHHHHhhCCHHH
Q 004733 603 GLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAG---YLDEAERVINSQH-IQ-A--RSDNWWALFSACAAHGNLRL 675 (733)
Q Consensus 603 ~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~ 675 (733)
+....+.+.|.+..+. + .++..+...+..++++.+ +.++++.+++.+. .. | +...+..+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3455666666666554 3 367777777777777777 5557777777655 22 4 23455566666778888888
Q ss_pred HHHHHHHHhccCCCCchHHHHH
Q 004733 676 GRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 676 A~~~~~~~~~~~p~~~~~~~~l 697 (733)
|++.++.+++.+|++..+....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888776655443
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.09 E-value=0.0052 Score=59.02 Aligned_cols=111 Identities=14% Similarity=0.006 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHH--hccC---CHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhh
Q 004733 586 KPDQATFTAVLSAC--SHAG---LVDDGTRIFDSMVNDYGFIPAE-DHLSCMLDLLGRAGYLDEAERVINSQHIQARSDN 659 (733)
Q Consensus 586 ~p~~~~~~~ll~~~--~~~~---~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 659 (733)
+.+...|...+++. ...+ +..+|+.+|++.++. .|+. ..+..+..+|. ...... ......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~----------~~~~~~-~~~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDI----------VRHSQH-PLDEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH----------HHHHHS-CCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----------HHhccC-CCchhh
Confidence 55666777777643 3333 357888999999866 6763 34444444443 111111 001111
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
... ...+... .......|.++.++..++..+...|++++|...++++.+.+
T Consensus 257 ~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 257 LAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 010 1122221 13446779999999999998888999999999999999876
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.98 E-value=0.0028 Score=58.13 Aligned_cols=87 Identities=10% Similarity=0.036 Sum_probs=62.0
Q ss_pred HHHHHHHHhcC-CCCC---hhhHHHHHHHHHh-----hCCHHHHHHHHHHHhccCCCC-chHHHHHHHHHHhc-CChHHH
Q 004733 642 DEAERVINSQH-IQAR---SDNWWALFSACAA-----HGNLRLGRIIAGLLLEREQDK-PSVYVLLSNIYAAA-GLWEEA 710 (733)
Q Consensus 642 ~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 710 (733)
..|...+++.. ..|+ ...|..+...|.. -|+.++|++.++++++++|+. ..++..++..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 34444444433 4555 3345555555655 488888888888888888874 88888888888774 888888
Q ss_pred HHHHHHHHhCCCcCCCcc
Q 004733 711 ANIRELLKRTGVIKQPGC 728 (733)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~ 728 (733)
.+++++..+..+..+|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888888888877765664
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.0043 Score=62.37 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCchHHH
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLE-----REQDKPSVYV 695 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 695 (733)
+++.+...|...|++++|+.+++++++ .+|++|.+-.
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 355666666666666666666666665 4576665543
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.90 E-value=0.11 Score=40.88 Aligned_cols=141 Identities=10% Similarity=0.058 Sum_probs=100.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChH
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLD 642 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 642 (733)
+.-.|..++..++..+..... +..-|+.++--....-+-+-..++++.+=+-|.+.+- .....++.+|.+.|.
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~~~~n~-- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT-- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC--
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHHHHhcc--
Confidence 345688888999988887643 4555666665555556667777777777544332221 123344445544443
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 643 EAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 643 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
+....+..+..+..+|.-++-..++...+...|.+|.++..++.+|.+.|+..+|-+++.+.=++|+
T Consensus 90 -------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 -------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp -------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344555677788899999999999988778888899999999999999999999999999999997
Q ss_pred c
Q 004733 723 I 723 (733)
Q Consensus 723 ~ 723 (733)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.0077 Score=60.64 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhcC---------CCCChh-hHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCc
Q 004733 627 HLSCMLDLLGRAGYLDEAERVINSQH---------IQARSD-NWWALFSACAAHGNLRLGRIIAGLLLE-----REQDKP 691 (733)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~ 691 (733)
+++.++.+|...|++++|+.++++.. ..|+.. .+..+...|...|++++|+.+++++++ .+|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 44555555555555555555554322 222222 456666777777777777777777776 567777
Q ss_pred hHHHH
Q 004733 692 SVYVL 696 (733)
Q Consensus 692 ~~~~~ 696 (733)
.+-..
T Consensus 411 ~~~~~ 415 (429)
T 3qwp_A 411 LIEDL 415 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.012 Score=48.22 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcC--CCCChhhHHHHHHHHHhhC---CHHHHHHHHHHHhccC-C-CCchHHHHHHHHHHhcCChHHHHHH
Q 004733 641 LDEAERVINSQH--IQARSDNWWALFSACAAHG---NLRLGRIIAGLLLERE-Q-DKPSVYVLLSNIYAAAGLWEEAANI 713 (733)
Q Consensus 641 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 713 (733)
...+.+.+.+.. ..++..+...+.+++.+.+ ++++++.+++.+.+.+ | +....++.|+.+|++.|++++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 334444444322 3466777777888888777 6668888888888877 6 4567788888888888888888888
Q ss_pred HHHHHhCCC
Q 004733 714 RELLKRTGV 722 (733)
Q Consensus 714 ~~~~~~~~~ 722 (733)
++.+.+..+
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 888876543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.57 E-value=0.0094 Score=46.13 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=58.5
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHhcC----C-----CCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHH
Q 004733 624 AEDHLSCMLDLLGRAGYLDEAERVINSQH----I-----QARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVY 694 (733)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 694 (733)
+..-...+...+.+.|+++.|...++... . .+....+..+..++.+.|+++.|...++++.+..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555678888889999999998887644 1 12355678888889999999999999999999999998876
Q ss_pred HHHH
Q 004733 695 VLLS 698 (733)
Q Consensus 695 ~~l~ 698 (733)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6554
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.073 Score=59.39 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=86.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 004733 531 LYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTR 610 (733)
Q Consensus 531 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 610 (733)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...|...|+.+...+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHH
Confidence 3456788898888877663 567888899999999999999998887643 2233444444666666555
Q ss_pred HHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 004733 611 IFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDK 690 (733)
Q Consensus 611 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 690 (733)
+.+..... | -++.-..+|.+.|++++|.+++.+ .+++++|..+.+. ..|..
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~-------------------~~~~~~A~~lA~~---~~~~~ 779 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK-------------------SQRFSEAAFLGST---YGLGD 779 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH-------------------TTCHHHHHHHHHH---TTCCH
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH-------------------cCChHHHHHHHHH---hCCCh
Confidence 55444433 2 123334455666777777666554 4577777776554 44433
Q ss_pred ---chHHHHHHHHHHhcCChHHH
Q 004733 691 ---PSVYVLLSNIYAAAGLWEEA 710 (733)
Q Consensus 691 ---~~~~~~l~~~~~~~g~~~~A 710 (733)
+.+......-+...|+.+.|
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHH
Confidence 24445555555666765433
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.13 Score=57.47 Aligned_cols=152 Identities=12% Similarity=0.070 Sum_probs=89.4
Q ss_pred HHhcCCHHHHHH-HHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHH
Q 004733 333 YSSCGKIDEACM-IFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAF 411 (733)
Q Consensus 333 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 411 (733)
....+++++|.+ ++..++ +......++..+.+.|.++.|+++.++-.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------------------------ 656 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------------------------ 656 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------------------------
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------------------------
Confidence 345688888877 654433 01122666677777788887776653211
Q ss_pred HHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHH
Q 004733 412 VFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLS 491 (733)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 491 (733)
.-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |.
T Consensus 657 --------------~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~ 711 (814)
T 3mkq_A 657 --------------QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LE 711 (814)
T ss_dssp --------------HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HH
T ss_pred --------------hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hh
Confidence 11234567889999998887764 456888899999999999999998887643 22
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 004733 492 VALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNM 547 (733)
Q Consensus 492 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 547 (733)
.+...+...++.+...++-+.....|. ++....+|.+.|++++|.+++.+
T Consensus 712 ~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 712 SLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333335555544444333333221 12233344445555555554433
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.34 E-value=0.021 Score=44.06 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccC-------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 661 WALFSACAAHGNLRLGRIIAGLLLERE-------QDKPSVYVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 661 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
..+...+...|++..|...++.+++.. +..+.++..|+.+|.+.|++++|..+++++.+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344555555556666655555555532 22334555555556666666666655555554
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.022 Score=60.80 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=50.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 664 FSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
...|...|+++.|+.+.+++....|.+...|..|+.+|...|+++.|+=.++-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445678899999999999999999999999999999999999999999988865
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.19 E-value=0.03 Score=45.11 Aligned_cols=106 Identities=8% Similarity=0.073 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHhHhhcCCCCCch-HHHHHHHH------hhhcCChHHHHHHHHhcC--
Q 004733 588 DQATFTAVLSACSHAGLV------DDGTRIFDSMVNDYGFIPAED-HLSCMLDL------LGRAGYLDEAERVINSQH-- 652 (733)
Q Consensus 588 ~~~~~~~ll~~~~~~~~~------~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~-- 652 (733)
|..+|-..+....+.|++ ++.+++|++.... ++|+.. .+...+.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455666666666666777 7777777777765 555422 12222211 223456666666666543
Q ss_pred CCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHH
Q 004733 653 IQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYV 695 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 695 (733)
.+.=...|......-.++|++..|..++.++....|.+...+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 1111344555555555666666666666666666665544433
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.91 E-value=0.066 Score=40.10 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHhhhcCC---hHHHHHHHHhcC-CCCC-hhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 623 PAEDHLSCMLDLLGRAGY---LDEAERVINSQH-IQAR-SDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 623 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
.++..+..+..++...++ .++|..++++.. ..|+ +.....+...+...|++++|+..++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 345566666666644333 567777776655 3343 44555666667778888888888888888887743
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.82 E-value=0.031 Score=43.95 Aligned_cols=99 Identities=13% Similarity=-0.020 Sum_probs=65.5
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHH---HHHHHHhcCCC--C--ChhhHHHHHHHHHh
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDE---AERVINSQHIQ--A--RSDNWWALFSACAA 669 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~ 669 (733)
..-........+.+-|.+.... |. |+..+--.+..++.+..+..+ ++.+++.+... | .......+.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333344555666666666554 43 777777777888888776655 77777776622 3 12234556666788
Q ss_pred hCCHHHHHHHHHHHhccCCCCchHHHHH
Q 004733 670 HGNLRLGRIIAGLLLEREQDKPSVYVLL 697 (733)
Q Consensus 670 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l 697 (733)
.|++++|+..++.+++..|++..+..+.
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8888888888888888888887665544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.79 E-value=0.12 Score=40.59 Aligned_cols=82 Identities=13% Similarity=0.025 Sum_probs=53.6
Q ss_pred ChHHHHHHHHhcC--CCCChhhHHHHHHHHHhhCCHH---HHHHHHHHHhccC-C-CCchHHHHHHHHHHhcCChHHHHH
Q 004733 640 YLDEAERVINSQH--IQARSDNWWALFSACAAHGNLR---LGRIIAGLLLERE-Q-DKPSVYVLLSNIYAAAGLWEEAAN 712 (733)
Q Consensus 640 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 712 (733)
....+.+-+.+.. ..++..+-..+.+++.+.++.. +++.+++.+...+ | ..-..++.|+.++++.|++++|++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444322 3466677777777777766544 4777777777766 4 344567777888888888888888
Q ss_pred HHHHHHhCC
Q 004733 713 IRELLKRTG 721 (733)
Q Consensus 713 ~~~~~~~~~ 721 (733)
+++.+.+..
T Consensus 96 ~~~~lL~~e 104 (126)
T 1nzn_A 96 YVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 888777644
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.17 E-value=0.2 Score=40.15 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHhhhcCChH---HHHHHHHhcC-CCC--ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 622 IPAEDHLSCMLDLLGRAGYLD---EAERVINSQH-IQA--RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 622 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
.|+..+--.+..++.+..+.+ +++.+++.+. ..| ......-+.-++.+.|++++|++..+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 445555555555555555433 3444444433 222 12233344445556666666666666666666655444
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.92 Score=38.21 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=61.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 004733 530 TLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGT 609 (733)
Q Consensus 530 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~ 609 (733)
+.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++...- ..+.-.|...|+.+...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------DKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------HHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------HHHHHHHHHhCCHHHHH
Confidence 3445667777777776665 35567777777777777777777777765431 23333444556665555
Q ss_pred HHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 610 RIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 610 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
++-+....+ | -++.-...+.-.|+++++.+++.+..
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544444333 2 13333444555677777766665533
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.02 E-value=0.062 Score=49.35 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhc-----cCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHhhhc-
Q 004733 570 KEAVSCFKAMQDVGRIKPD---QATFTAVLSACSH-----AGLVDDGTRIFDSMVNDYGFIPA--EDHLSCMLDLLGRA- 638 (733)
Q Consensus 570 ~~A~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~-----~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~- 638 (733)
..|...+++.++ +.|+ -..|..+...|.. -|+.++|.+.|++.++. .|+ ..++..+.+.++..
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhc
Confidence 344455555555 3344 2344445444544 25555555555555543 331 34444444444442
Q ss_pred CChHHHHHHHHh
Q 004733 639 GYLDEAERVINS 650 (733)
Q Consensus 639 g~~~~A~~~~~~ 650 (733)
|+.++|.+.+++
T Consensus 254 gd~~~a~~~L~k 265 (301)
T 3u64_A 254 NNRAGFDEALDR 265 (301)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444444
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.89 E-value=0.087 Score=41.56 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCchHHHHHHHHhhhcCCh---HHHHHHHHhcC-CCC--ChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchH
Q 004733 623 PAEDHLSCMLDLLGRAGYL---DEAERVINSQH-IQA--RSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSV 693 (733)
Q Consensus 623 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 693 (733)
|+..+--.+..++.+..+. .+++.+++.+. ..| ....+.-+.-++.+.|++++|++..+.+++..|++..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444444444444432 23344443332 122 12233344444555555555555555555555555443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.59 E-value=0.32 Score=39.23 Aligned_cols=51 Identities=8% Similarity=-0.020 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 004733 671 GNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 671 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+|.++|..+|+.+.+....-+.+|...++--.++|+...|++++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444444444444444322223333344443444444444444444444433
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.50 E-value=1.2 Score=37.47 Aligned_cols=128 Identities=12% Similarity=0.171 Sum_probs=82.7
Q ss_pred HHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHH
Q 004733 131 SACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQ 209 (733)
Q Consensus 131 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~ 209 (733)
......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.+ ..|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3446788888888887766 3566788888888889999998888887654 33444444 5666666665
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHH
Q 004733 210 LHSLVTKSGFSCLVSVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDM 282 (733)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 282 (733)
+-+.....|- ++.....+...|+++++.++|.+.... | --+-.....|..+.|.++.+++
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~-~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSL-P------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCH-H------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCCh-H------HHHHHHHHcCcHHHHHHHHHHh
Confidence 5555554441 344445566778888888888775541 1 1111122356667777776655
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.84 E-value=0.2 Score=41.39 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 690 KPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
+.+.-+.++.+|.+.|++++|+.+++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4467788999999999999999998754
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.28 E-value=9.3 Score=40.10 Aligned_cols=324 Identities=8% Similarity=-0.067 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHhhcc
Q 004733 323 TSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVG-IRPDEFTFGSLLASSGF 401 (733)
Q Consensus 323 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~ 401 (733)
...-+..+..+.+.+++.....++.. ...+...-.....+....|+..+|....+++-..| ..|+. ...++..+.
T Consensus 72 ~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~- 147 (618)
T 1qsa_A 72 RTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWR- 147 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHH-
Confidence 33445556667778888877776655 32344444556667777888777777777765544 22332 223332222
Q ss_pred hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcC---------------------------CCChhh
Q 004733 402 IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMS---------------------------PRNIIT 454 (733)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------------------~~~~~~ 454 (733)
+.|...+..++. -+......|+...|..+...+. .++...
T Consensus 148 ------------~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~ 214 (618)
T 1qsa_A 148 ------------ASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFT 214 (618)
T ss_dssp ------------HTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHH
T ss_pred ------------HCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhh
Confidence 111111111111 1122223333333333333321 111111
Q ss_pred ---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHh----HHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 004733 455 ---WNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYT----LSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNA 527 (733)
Q Consensus 455 ---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 527 (733)
+...+.-+.+ .+++.|...+....... ..+... ...+.......+...++...+....... .+......
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~ 290 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHH
Confidence 1111222222 36677777777775433 223222 2223334444453445555555433322 22223344
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 004733 528 MITLYAKCGDLDCSLRVFNMMIEKD---TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGL 604 (733)
Q Consensus 528 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 604 (733)
.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|+.+.+ +. +|..++.+ .+.|.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-----~~--~fYg~lAa-~~Lg~ 362 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-----QR--GFYPMVAA-QRIGE 362 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SC--SHHHHHHH-HHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-----CC--ChHHHHHH-HHcCC
Confidence 4445556788888888888876432 11112234556677888888888887754 11 23332221 11221
Q ss_pred HHHHHHHHHHhHhhcCCCCC-ch-----HHHHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHH
Q 004733 605 VDDGTRIFDSMVNDYGFIPA-ED-----HLSCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRI 678 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 678 (733)
.-. . ......+. .. .-..-+..+...|....|...+..+....+......+.......|....++.
T Consensus 363 ~~~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 363 EYE-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp CCC-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCC-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHH
Confidence 000 0 00001110 00 1112345567788888888777665533444444455555567777777776
Q ss_pred HHHHH
Q 004733 679 IAGLL 683 (733)
Q Consensus 679 ~~~~~ 683 (733)
.....
T Consensus 435 ~~~~~ 439 (618)
T 1qsa_A 435 ATIAG 439 (618)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.29 E-value=0.33 Score=47.98 Aligned_cols=68 Identities=16% Similarity=0.032 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCcCCCc
Q 004733 660 WWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKR-----TGVIKQPG 727 (733)
Q Consensus 660 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 727 (733)
...++.++...|++.+|+..+..+...+|-+...+..|..+|...|+..+|+++|+++++ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667788899999999999999999999999999999999999999999999987654 47666553
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.02 E-value=8.3 Score=36.42 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=68.1
Q ss_pred HHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChhhHHHHHHH
Q 004733 225 VVNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIR----FRDMLVASLRPSELTFVSVMSA 300 (733)
Q Consensus 225 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~ 300 (733)
+|.++..-|.+.+++++|.+++..-. ..+.+.|+...+-++ ++.+.+.++++|..+...++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44556666888999999999876532 235556666555444 4566677888888877777666
Q ss_pred cc--Cc------hhHHHHHHHHHHhC--CCcchHHHHHHHHHHHhcCCHHHHHHHH
Q 004733 301 CL--CP------RVGYQVHAQAMKSG--FEAYTSVSNAAITMYSSCGKIDEACMIF 346 (733)
Q Consensus 301 ~~--~~------~~~~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 346 (733)
+. .. .-......+-.+.| -.-|+.....+...|.+.+++.+|+..|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55 11 11222333334444 2345667777777777777777777766
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.94 E-value=3.8 Score=32.37 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=74.2
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 004733 463 LLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSL 542 (733)
Q Consensus 463 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 542 (733)
.-.|..++..++..+..... +..-++-++--....-+.+-..+.++.+-+ ..|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHH
Confidence 34566677777777666542 333444444444333444433333333221 1111 1233333333
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 004733 543 RVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGF 621 (733)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 621 (733)
.-+-.+-. +.......+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++ |+
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 33333322 2233444556666777777777777775443 3667777777777777777777777777777766 54
No 245
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=91.71 E-value=3.9 Score=37.97 Aligned_cols=210 Identities=12% Similarity=0.035 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhcCCCCCC----cccHHHHHHHHhccchhhhhhhHHHHHHHcccccCch--hhHhH
Q 004733 25 NISLANLSRSGHYQDALHLFVQIHSSHKLKPD----IYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH--VANTI 98 (733)
Q Consensus 25 n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 98 (733)
++.+...++.|+.+....+++. |..++ ..-.+.|..+ +..|+.+ +.+.+++.|..++.. .....
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTPLHNA-VQMSRED----IVELLLRHGADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCH
T ss_pred chHHHHHHHcCCHHHHHHHHHc-----CCCcccccCCCCCcHHHHH-HHcCCHH----HHHHHHHcCCCCcccCCCCCCH
Confidence 3456666788888766555543 22332 2223333333 4456554 445556667666542 23456
Q ss_pred HHHHhhccChHHHHHHHHhcCCCCcch--hhHHHHHhhccCChhHHHHHhccCCCCChh------------hHHHHHHHH
Q 004733 99 LSLYKNARDLVSVKRVFSEIQNPDVYS--WTTFLSACTKMGHVDYACEVFDKMPDRDLP------------VYNAMITGC 164 (733)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~li~~~ 164 (733)
+......|+.+-++.+++.+..++... -...+...+..|+.+-+..+++.-..++.. .-...+...
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A 155 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHH
Confidence 666777889988888888876644321 122344556778888888877765433221 011233334
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHH--HHHHHHHhHhcCCh
Q 004733 165 TENGYEDIGIGLFREMHKLDVRRD---NYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSV--VNALITMYFNCGNV 239 (733)
Q Consensus 165 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~ 239 (733)
++.|+.+-+..+++. .|..++ ..-.+.+..++..++.....++.+.+.+.|..++... -.+.+...++.|+.
T Consensus 156 ~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 232 (285)
T 1wdy_A 156 AEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232 (285)
T ss_dssp HHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 455665444433332 143333 2223344444445555455666777777776554321 11233444566776
Q ss_pred HHHHHHHH
Q 004733 240 VDACKVFE 247 (733)
Q Consensus 240 ~~a~~~~~ 247 (733)
+-+..+++
T Consensus 233 ~~v~~Ll~ 240 (285)
T 1wdy_A 233 GLVQRLLE 240 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666665
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=2.6 Score=42.48 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcC---CCCC-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhc---cCCCCc----hH
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQH---IQAR-----SDNWWALFSACAAHGNLRLGRIIAGLLLE---REQDKP----SV 693 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~----~~ 693 (733)
..|...+...|++.+|.+++..+. ...+ ...+..-++.|...+|+.+|..++.++.. ..+.++ .+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 456777888888888888877755 1111 12345556677788888888888887643 223332 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004733 694 YVLLSNIYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 694 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 719 (733)
+...+..+...++|.+|.+.|.++-+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66677777888888888887776643
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.14 E-value=14 Score=37.17 Aligned_cols=162 Identities=10% Similarity=0.133 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHccCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCH
Q 004733 260 NVMMDGLASVGRVEEALIRFRDMLVASLRPSELTFVSVMSACLCPRVGYQVHAQAMKSGFEAYTSVSNAAITMYSSCGKI 339 (733)
Q Consensus 260 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 339 (733)
..|...+...|++.+|..++.++...-...+..... ...+...++.|...+++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k---------------------------ve~~l~q~rl~l~~~d~ 193 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK---------------------------IQFILEQMELSILKGDY 193 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH---------------------------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH---------------------------HHHHHHHHHHHHHCCCH
Confidence 567788999999999999999986542222222111 12234457788888999
Q ss_pred HHHHHHHHhccc-----CC-----cccHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHh-----h-cc-
Q 004733 340 DEACMIFARLQE-----KD-----IVSWNTMISTYAQRNLGRSAILAYLEMQSV-GIRPDEFTFGSLLAS-----S-GF- 401 (733)
Q Consensus 340 ~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~-----~-~~- 401 (733)
..|..+++++.. +. ...|...+..+...+++.+|...|.+.... ....|...+..++.. . +.
T Consensus 194 ~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~ 273 (445)
T 4b4t_P 194 SQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPY 273 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 999888887643 11 123566677777888898888887776542 122233222222111 0 00
Q ss_pred hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhc--CCHHHHHHHHhhcC
Q 004733 402 IEMVEMIHAFVFINGIITNIQVSNALISAYAKN--ERIKQAYQIFHNMS 448 (733)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 448 (733)
.+.-..+.........-++...+..++.+|... .+++...+.|....
T Consensus 274 ~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 274 GNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp SSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred CchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 111111222222222234556677788887654 45666666666544
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.95 E-value=2.6 Score=38.16 Aligned_cols=54 Identities=7% Similarity=0.051 Sum_probs=30.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 004733 563 YAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 563 ~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 618 (733)
..+.|++++|++....-++.. +-|...-..++..+|-.|+|+.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345566666666666555543 333444445555666666666666666666543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.90 E-value=3.6 Score=32.96 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=56.7
Q ss_pred CCCChhhHHHHHHHHHhhCC---HHHHHHHHHHHhccCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 653 IQARSDNWWALFSACAAHGN---LRLGRIIAGLLLEREQD-KPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|+..+-..+.+++.++.+ ..+++.+++......|. .-..++.|+.++++.|++++|+++.+.+.+..+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 35777788888888887764 56788899998888885 446788889999999999999999999987554
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.60 E-value=3 Score=32.95 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=54.3
Q ss_pred CCCChhhHHHHHHHHHhhCC---HHHHHHHHHHHhccCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 004733 653 IQARSDNWWALFSACAAHGN---LRLGRIIAGLLLEREQD-KPSVYVLLSNIYAAAGLWEEAANIRELLKRTGV 722 (733)
Q Consensus 653 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 722 (733)
..|++.+-..+.+++.+..+ ..+++.+++.+...+|. .-..++.|+.++++.|++++|+++.+.+.+..+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 45667777778888887664 45788888888887774 456788888889999999999999988886543
No 251
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=90.07 E-value=16 Score=38.48 Aligned_cols=81 Identities=14% Similarity=0.017 Sum_probs=41.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcchHHHHHHHHHHHHhCCccchhHHHHHHHHHHh---cCC
Q 004733 360 MISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGFIEMVEMIHAFVFINGIITNIQVSNALISAYAK---NER 436 (733)
Q Consensus 360 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 436 (733)
....+.-.|+++.|++++-.. ...+.+.+...+..++.+.....+...- .+ .| ..-+..++..|.+ ..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSFRYSD 371 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccCCCcccccC--CC-cc-cccHHHHHHHHHHHhhcCC
Confidence 455666788888888877644 3455666666666555533211111100 00 11 2224566666654 567
Q ss_pred HHHHHHHHhhcC
Q 004733 437 IKQAYQIFHNMS 448 (733)
Q Consensus 437 ~~~A~~~~~~~~ 448 (733)
+..|.+.|--+.
T Consensus 372 ~~~Al~Y~~li~ 383 (661)
T 2qx5_A 372 PRVAVEYLVLIT 383 (661)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh
Confidence 777777776664
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.04 E-value=26 Score=38.56 Aligned_cols=165 Identities=11% Similarity=0.040 Sum_probs=78.4
Q ss_pred cccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhh-HH---HHHHHHHhcCChHHH
Q 004733 498 ARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMI-EKDTIS-WN---ALISAYAQHGEGKEA 572 (733)
Q Consensus 498 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~-~~---~l~~~~~~~~~~~~A 572 (733)
...|+.+....++..+.+.. ..+..-..++.-++.-.|+.+.+..+++.+. ..++.. |. ++.-+|+-.|+....
T Consensus 501 vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH
T ss_pred cccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 34555555555555554422 1111111222223335566666666666554 233322 22 233345566676655
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCCh-HHHHHHHHhc
Q 004733 573 VSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYL-DEAERVINSQ 651 (733)
Q Consensus 573 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 651 (733)
.++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+. ..|....-..+.-+....|.. .+|.+.+..+
T Consensus 580 q~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 580 KRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56777776532 222222222222444455555556666555443 234433333344444444443 5677777777
Q ss_pred CCCCChhhHHHHHHHH
Q 004733 652 HIQARSDNWWALFSAC 667 (733)
Q Consensus 652 ~~~~~~~~~~~l~~~~ 667 (733)
...++..+-...+.++
T Consensus 656 ~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 656 TKDPVDFVRQAAMIAL 671 (963)
T ss_dssp HTCSSHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH
Confidence 6666665544444443
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.96 E-value=7 Score=44.99 Aligned_cols=140 Identities=12% Similarity=0.067 Sum_probs=71.6
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----C---------------
Q 004733 492 VALSSCARISSLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK----D--------------- 552 (733)
Q Consensus 492 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--------------- 552 (733)
.++..+...+..+.+.++.... +.++...-.+..++...|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445555555555555433221 223333334556677788888888888776310 0
Q ss_pred -------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHH-----HHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 004733 553 -------TISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQA-----TFTAVLSACSHAGLVDDGTRIFDSMVNDYG 620 (733)
Q Consensus 553 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 620 (733)
..-|..++..+.+.+.++.+.++-+..++.. .++.. .|..+..++...|++++|-..+-.+-..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~--~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-- 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK--ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-- 967 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC--CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--
Confidence 0113445555556666666666665555543 12211 2445555666666666666555555322
Q ss_pred CCCCchHHHHHHHHhhhcCCh
Q 004733 621 FIPAEDHLSCMLDLLGRAGYL 641 (733)
Q Consensus 621 ~~p~~~~~~~l~~~~~~~g~~ 641 (733)
.--...+..|+..++..|..
T Consensus 968 -~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 968 -PLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp -SSCHHHHHHHHHHHHHHCCH
T ss_pred -HHHHHHHHHHHHHHHhCCCh
Confidence 22234555555555555443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.88 E-value=1.5 Score=36.21 Aligned_cols=28 Identities=4% Similarity=-0.108 Sum_probs=19.6
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcC
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQH 652 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (733)
.+.--.+..+|.+.|++++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444456777777788888888777776
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.59 E-value=0.93 Score=40.98 Aligned_cols=113 Identities=9% Similarity=0.071 Sum_probs=75.8
Q ss_pred HHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHHHhcC-CCCChh----hHHHHHHHHHhhC
Q 004733 597 SACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVINSQH-IQARSD----NWWALFSACAAHG 671 (733)
Q Consensus 597 ~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----~~~~l~~~~~~~g 671 (733)
....+.|++++|++....-++. -+-|...-..+++.||-.|+++.|.+-++.+. ..|+.. .|..++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3466889999999999888876 34566777889999999999999999888655 455543 33444433
Q ss_pred CHHHHHHHHHHHhc-----cCCCCchHHH-HHHHH--HHhcCChHHHHHHHHHHHhCC
Q 004733 672 NLRLGRIIAGLLLE-----REQDKPSVYV-LLSNI--YAAAGLWEEAANIRELLKRTG 721 (733)
Q Consensus 672 ~~~~A~~~~~~~~~-----~~p~~~~~~~-~l~~~--~~~~g~~~~A~~~~~~~~~~~ 721 (733)
+..=+++.+ ..+..+..|. .|..+ ....|+.++|.++..++.+..
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 222223333 2233333333 33333 445799999999999987753
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.40 E-value=15 Score=34.79 Aligned_cols=125 Identities=15% Similarity=0.107 Sum_probs=67.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCChhhHHHHHHhhcc----
Q 004733 330 ITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILA----YLEMQSVGIRPDEFTFGSLLASSGF---- 401 (733)
Q Consensus 330 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~---- 401 (733)
..-|.+.+++++|.+++-.- ...+.+.|+...+-++ ++-..+.++++|..+...++..+..
T Consensus 42 ~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 33356666666666654322 2234445554443333 3444455666666655555444333
Q ss_pred ----hHHHHHHHHHHHHhC--CccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhC
Q 004733 402 ----IEMVEMIHAFVFING--IITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLN 465 (733)
Q Consensus 402 ----~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 465 (733)
.........+..+.| ..-++.....+...|.+.+++.+|...|-.-..+....+..++.-+...
T Consensus 111 ~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 111 EPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 223333444444444 3456777778888888889988888887532222334555544444433
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.17 E-value=15 Score=34.51 Aligned_cols=109 Identities=9% Similarity=0.021 Sum_probs=67.0
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCChhhHHHHHHHc
Q 004733 226 VNALITMYFNCGNVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALI----RFRDMLVASLRPSELTFVSVMSAC 301 (733)
Q Consensus 226 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~t~~~ll~~~ 301 (733)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +++.+.+.++.++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455567788888888888765322 3455666655544 455566677888877777666655
Q ss_pred c-----Cc---hhHHHHHHHHHHhCC--CcchHHHHHHHHHHHhcCCHHHHHHHHH
Q 004733 302 L-----CP---RVGYQVHAQAMKSGF--EAYTSVSNAAITMYSSCGKIDEACMIFA 347 (733)
Q Consensus 302 ~-----~~---~~~~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 347 (733)
. .. .-......+..+.|- .-++.....+...|.+.|++.+|+..|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4 11 112233333333332 2466777788888888888888877664
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.94 E-value=18 Score=33.96 Aligned_cols=124 Identities=10% Similarity=0.121 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCChhhHHHHHHhhcc----
Q 004733 330 ITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAIL----AYLEMQSVGIRPDEFTFGSLLASSGF---- 401 (733)
Q Consensus 330 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~---- 401 (733)
..-|.+.+++++|.+++..- ...+.+.|+...+-+ +++-..+.++.++......++..+..
T Consensus 40 ~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 33356666777776665432 223445555544443 34444555666766655555443322
Q ss_pred ----hHHHHHHHHHHHHhCC--ccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 004733 402 ----IEMVEMIHAFVFINGI--ITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLL 464 (733)
Q Consensus 402 ----~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 464 (733)
.........+..+.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+..
T Consensus 109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 2334444555555433 34677778888888899999888887763322244455554444433
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.81 E-value=1.8 Score=46.28 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=75.1
Q ss_pred HHHHHHhhcCC-hhHHHHHHHHHHHcCCCCChhhH--HHHHHhh-ccC-chHHHHHHHHHHHHh------CCCC-c----
Q 004733 159 AMITGCTENGY-EDIGIGLFREMHKLDVRRDNYSF--ASVLSVC-DAG-LLEFGRQLHSLVTKS------GFSC-L---- 222 (733)
Q Consensus 159 ~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~-~~~-~~~~a~~~~~~~~~~------~~~~-~---- 222 (733)
.++..+...|+ ++.|..+|+++.... |....+ ..++..+ ..+ +--+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 577899999987753 433322 2233333 222 222344444333321 1111 1
Q ss_pred ------hHHHHHHHHHhHhcCChHHHHHHHHhhhcCCCC-ccchHHHHHHHHhcCChHHHHHHHHHH
Q 004733 223 ------VSVVNALITMYFNCGNVVDACKVFEEAKGYVCD-HISYNVMMDGLASVGRVEEALIRFRDM 282 (733)
Q Consensus 223 ------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 282 (733)
......-.+.+...|+++-|+++-++.....|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112333345577789999999999998777785 558999999999999999999988876
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.75 E-value=3.1 Score=40.98 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhh----cCCCCCchHHHHHH
Q 004733 557 NALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVND----YGFIPAEDHLSCML 632 (733)
Q Consensus 557 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~p~~~~~~~l~ 632 (733)
..++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|++.|+.+.+. .|+.|+..+-...-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445677778899999999999888754 446778999999999999999999998887553 58999877655443
Q ss_pred HHh
Q 004733 633 DLL 635 (733)
Q Consensus 633 ~~~ 635 (733)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.67 E-value=37 Score=37.36 Aligned_cols=249 Identities=11% Similarity=0.002 Sum_probs=127.9
Q ss_pred HHhcCCHHHHHHHHhhcCC----CChh--hHHHHHHHHHhCCCchHHHHHHHHHHHCCC-------CCCHHhHHHHHHHh
Q 004733 431 YAKNERIKQAYQIFHNMSP----RNII--TWNTLINGFLLNGFPVQGLQHFSELLMSEL-------RPDEYTLSVALSSC 497 (733)
Q Consensus 431 ~~~~g~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll~~~ 497 (733)
....|+.++++.+++.... .+.. .-..+.-+....|..+++..++...+...- .+....-..+--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456777777777776553 1222 222333455666666678887777654321 01111112222222
Q ss_pred cccCC-hHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhhHH--HHHHHHHhcCChHHH
Q 004733 498 ARISS-LRHGKQIHGYVLKNNLIS-KMSLGNAMITLYAKCGDLDCSLRVFNMMIE-KDTISWN--ALISAYAQHGEGKEA 572 (733)
Q Consensus 498 ~~~~~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~A 572 (733)
...|. -+++.+.+..+....-.. ....--++...+...|+-+....++..+.+ .+..... .+.-++...|+.+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 22332 234444444444322110 001112233345566777777777776542 2222222 233344577888888
Q ss_pred HHHHHHHHHcCCCCCCHH-HHH---HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChHHHHHHH
Q 004733 573 VSCFKAMQDVGRIKPDQA-TFT---AVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLDEAERVI 648 (733)
Q Consensus 573 ~~~~~~~~~~~~~~p~~~-~~~---~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (733)
..+.+.+... .++. -|. .+.-+|+-.|+.....+++..+... ...+..-...+.-++...|+.+.+.+++
T Consensus 544 ~~li~~L~~~----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 544 DDLITKMLAS----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp HHHHHHHHHC----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888763 2332 233 2334677888887777788888764 2223333333444445567766677777
Q ss_pred HhcCCCCChhhHHHHHHH--HHhhCCH-HHHHHHHHHHhc
Q 004733 649 NSQHIQARSDNWWALFSA--CAAHGNL-RLGRIIAGLLLE 685 (733)
Q Consensus 649 ~~~~~~~~~~~~~~l~~~--~~~~g~~-~~A~~~~~~~~~ 685 (733)
+.+....++.+-.....+ ....|.. .+++..+..+..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 655534444433322222 3334432 567777777753
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.12 E-value=27 Score=34.13 Aligned_cols=56 Identities=7% Similarity=0.039 Sum_probs=24.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 595 VLSACSHAGLVDDGTRIFDSMVNDYGFIPA----EDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 595 ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
++..|...|++.+|.+++.++.+...-..+ .+++..-+++|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 444555555555555555555443111111 11233334445555555555554443
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.10 E-value=4.4 Score=30.01 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 004733 569 GKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLD 633 (733)
Q Consensus 569 ~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 633 (733)
.=+..+-++.+.... +.|++......+.+|.+.+++..|.++++.+..+ ..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 335556666666666 7788888888888888888888888888888766 3333445665554
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.24 E-value=4.7 Score=29.87 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=40.8
Q ss_pred hcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHH
Q 004733 650 SQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLS 698 (733)
Q Consensus 650 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 698 (733)
.+..-|++....+.+.+|.+.+|+..|+++++-+...-.+...+|..+.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3447899999999999999999999999999998887766666677665
No 265
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=84.82 E-value=41 Score=35.44 Aligned_cols=39 Identities=26% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCcccHHHHHHHHHhc
Q 004733 329 AITMYSSCGKIDEACMIFARLQE---KDIVSWNTMISTYAQR 367 (733)
Q Consensus 329 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 367 (733)
+|-.+.++|++++|.++.++... .-...+...+..|+..
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 45667899999999999988764 1224666677777643
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=84.62 E-value=20 Score=31.30 Aligned_cols=153 Identities=15% Similarity=0.099 Sum_probs=82.8
Q ss_pred CCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhh
Q 004733 55 PDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACT 134 (733)
Q Consensus 55 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 134 (733)
++...-...+.++...|....... +..++. .++..+-...+.++...++.+....+.+...++++..-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~-L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEP-LIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHH-HHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHH-HHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555444322222 222222 3455666666777777776666666666666677777777777777
Q ss_pred ccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHH
Q 004733 135 KMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSL 213 (733)
Q Consensus 135 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~ 213 (733)
+.|+.+....+.+.+..++...-...+.++.+.|..+ +...+..+.+ .++...-...+.++ ..+. ..+...+..
T Consensus 107 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 107 QIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 7777666666666666666666666666666666543 3333444433 24444444444444 3333 334444444
Q ss_pred HHH
Q 004733 214 VTK 216 (733)
Q Consensus 214 ~~~ 216 (733)
+.+
T Consensus 182 ~l~ 184 (211)
T 3ltm_A 182 LAE 184 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 267
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=84.05 E-value=20 Score=30.94 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=19.9
Q ss_pred CCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCC
Q 004733 120 NPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGY 169 (733)
Q Consensus 120 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (733)
.+++......+.++.+.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34443333344444444443333333333333443333334444444333
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.07 E-value=11 Score=43.44 Aligned_cols=145 Identities=5% Similarity=-0.039 Sum_probs=85.0
Q ss_pred HHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCC-------------------
Q 004733 128 TFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGIGLFREMHKLDVRRD------------------- 188 (733)
Q Consensus 128 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------------------- 188 (733)
.++..+.+.|..+-+.++....+.. ....-.+..++...|++++|.++|++... |+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 3555566677777777766555543 33333556677888888888888876521 11111
Q ss_pred ----hhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCch----HHHHHHHHHhHhcCChHHHHHHHHhhhcCCCCccch
Q 004733 189 ----NYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLV----SVVNALITMYFNCGNVVDACKVFEEAKGYVCDHISY 259 (733)
Q Consensus 189 ----~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 259 (733)
..-|..++..+ +.+.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.++....-....
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 11244555666 667777777666666554322221 245666677777777777777776665433334455
Q ss_pred HHHHHHHHhcCChHH
Q 004733 260 NVMMDGLASVGRVEE 274 (733)
Q Consensus 260 ~~li~~~~~~g~~~~ 274 (733)
+.|+..+|..|..+.
T Consensus 975 r~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCChhh
Confidence 666666666665444
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.93 E-value=25 Score=30.57 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=50.3
Q ss_pred cCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCC
Q 004733 90 AYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGY 169 (733)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 169 (733)
++..+-...+..+...++.+....+.+...++++..-...+.++.+.++.+....+.+.+..++...-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34455555566666666655555555555566666666666777777766555555555666666666666666666665
Q ss_pred hh
Q 004733 170 ED 171 (733)
Q Consensus 170 ~~ 171 (733)
.+
T Consensus 111 ~~ 112 (211)
T 3ltm_A 111 ER 112 (211)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.20 E-value=26 Score=30.20 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=85.6
Q ss_pred CchhhHhHHHHHhhccChHHHHHHHHhcCCCCcchhhHHHHHhhccCChhHHHHHhccCCCCChhhHHHHHHHHhhcCCh
Q 004733 91 YPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYE 170 (733)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 170 (733)
+..+-...+.++...++.+....+.+.+..+++......+.++.+.|+.+....+.+.+..++...-...+.++.+.+..
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH
Confidence 44455556666666666666666666666677777777788888888776666666666677776666777777777764
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhh-ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcC
Q 004733 171 DIGIGLFREMHKLDVRRDNYSFASVLSVC-DAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCG 237 (733)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 237 (733)
+ +...+..+.. .++...-...+.++ ..|+ +.+...+..+.+. ++..+-...+.++.+..
T Consensus 138 ~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 R-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp G-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 4 4444444443 24555555555555 5554 4456666666654 34555555555555443
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.59 E-value=34 Score=31.25 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=25.7
Q ss_pred hHhcCChHHHHHHHHhhh-c-CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 004733 233 YFNCGNVVDACKVFEEAK-G-YVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPS 290 (733)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 290 (733)
.+..|+.+-+..+++... . ..++....+.+. ..+..++.....++++.+.+.|..++
T Consensus 155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCC
Confidence 344556555555554311 1 011222233332 33445554445556666666665554
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.27 E-value=19 Score=30.86 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLER 686 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 686 (733)
.|......+...|++++|..+++...+.
T Consensus 117 fYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 117 FYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444444444555555555555554443
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.46 E-value=16 Score=26.87 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 004733 529 ITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFT 593 (733)
Q Consensus 529 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 593 (733)
+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++...+.++-..| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg--~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS--DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS--SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 344667899999999999888888888876644 47788888888887887776 55555543
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.82 E-value=17 Score=26.79 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=45.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH
Q 004733 529 ITLYAKCGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFT 593 (733)
Q Consensus 529 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~ 593 (733)
+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++...+.++-..| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg--~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ--DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 344667899999999999988888888876644 46677788888777777766 55554443
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.23 E-value=13 Score=29.35 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 004733 571 EAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLD 633 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 633 (733)
+..+-++.+.... +.|++......+.+|-+.+++..|.++++.++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~D-lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 4555566666666 7888888888888888888888888888888776 3444556666654
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.40 E-value=13 Score=37.15 Aligned_cols=59 Identities=7% Similarity=-0.005 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHhhhcCChHHHHHHHHh
Q 004733 591 TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA--EDHLSCMLDLLGRAGYLDEAERVINS 650 (733)
Q Consensus 591 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (733)
+...+...|.+.|+++.|.+.+.++... ...+. ...+-.++..+...+++..+...+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444555555555555555555555543 21111 22344444555555555555555544
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.31 E-value=21 Score=26.35 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 004733 402 IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMS 481 (733)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 481 (733)
-+++..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-. .+.|..+++...+..+..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444444444444333 22222234456778999999999999999999999877644 5678888888888888887
Q ss_pred CCCCCHHhHH
Q 004733 482 ELRPDEYTLS 491 (733)
Q Consensus 482 ~~~p~~~~~~ 491 (733)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 7 56655554
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.46 E-value=22 Score=26.26 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 004733 402 IEMVEMIHAFVFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMS 481 (733)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 481 (733)
-+++..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|.+|-. .+.|..+++...+..+..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444444444444333 22222234456778999999999999999999999887754 4667888888888888777
Q ss_pred CCCCCHHhHH
Q 004733 482 ELRPDEYTLS 491 (733)
Q Consensus 482 ~~~p~~~~~~ 491 (733)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 56555554
No 279
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.69 E-value=28 Score=27.52 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=43.2
Q ss_pred HHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHH
Q 004733 648 INSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSN 699 (733)
Q Consensus 648 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 699 (733)
+-.+..-|++....+.+.+|.+.+|+..|+++++-+...-.+...+|..+.+
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3344478999999999999999999999999999998877666777776653
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.42 E-value=35 Score=27.79 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=30.8
Q ss_pred HHHHHHHHhccC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcC
Q 004733 676 GRIIAGLLLERE--QDKPSVYVLLSNIYAAAGLWEEAANIRELLKRTGVIK 724 (733)
Q Consensus 676 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 724 (733)
+..+++.+...+ -.-+..|...+..+...|++++|.++|+.-++.+.+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555666655543 3445556666777777777777777777666665544
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.93 E-value=81 Score=30.75 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 004733 422 QVSNALISAYAKNERIKQAYQIFHNMS 448 (733)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 448 (733)
.....+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445677788888888888888888765
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.90 E-value=29 Score=34.53 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHH----
Q 004733 524 LGNAMITLYAKCGDLDCSLRVFNMMIE------KDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFT---- 593 (733)
Q Consensus 524 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~---- 593 (733)
+...+.+.|.+.|+++.|.+.|.++.. .-...+-..++.+...+++..+...++++...-.-.+|....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566666666666666666666542 1223455556666666666666666666543210112221111
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhh
Q 004733 594 AVLSACSHAGLVDDGTRIFDSMVND 618 (733)
Q Consensus 594 ~ll~~~~~~~~~~~A~~~~~~~~~~ 618 (733)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234455666666665555443
No 283
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=68.65 E-value=38 Score=29.93 Aligned_cols=22 Identities=14% Similarity=-0.009 Sum_probs=13.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 004733 263 MDGLASVGRVEEALIRFRDMLV 284 (733)
Q Consensus 263 i~~~~~~g~~~~a~~~~~~m~~ 284 (733)
+...+..|+...++++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4445566667777777666654
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.57 E-value=45 Score=27.57 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 659 NWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 659 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
.|......+-..|++.+|..+++..++..
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444444555555555555555555433
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.57 E-value=1.1e+02 Score=30.25 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=104.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCccc--HHHHHHHHhccchhhhhhhHHHHHHHcccccCch--hhHhHHHHHh
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDIYS--LSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH--VANTILSLYK 103 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 103 (733)
|..-+..|+.+-+..+++. |..|+... ..+.+...+..|+.+.+.. +++.|..++.. ...+.+...+
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT-----TCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHH
Confidence 4445667777755555442 34444321 1222333345666655444 44456555432 2345667777
Q ss_pred hccChHHHHHHHHhcCCCCcch--hhHHHHHhhccCChhHHHHHhccCCCCC---hhhHHHHHHHHhhcCChhHHHHHHH
Q 004733 104 NARDLVSVKRVFSEIQNPDVYS--WTTFLSACTKMGHVDYACEVFDKMPDRD---LPVYNAMITGCTENGYEDIGIGLFR 178 (733)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~ 178 (733)
..|+.+-++-+++.+..++... -...+...++.|+.+.+..+++.-...+ ..-+ +.+...++.|+.+ +.+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~ 163 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVR----VAE 163 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHH----HHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHH----HHH
Confidence 8899998888888876654321 1223445567788888888887644322 1112 2233345556654 344
Q ss_pred HHHHcCCCCChh---hHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHH--HHHHHHhHhcCChHHHHHHHHh
Q 004733 179 EMHKLDVRRDNY---SFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVV--NALITMYFNCGNVVDACKVFEE 248 (733)
Q Consensus 179 ~m~~~~~~~~~~---~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~ 248 (733)
.+.+.|..++.. ..+.+..++..|+.+. ++.+.+.|..++...+ ...+...+..|+.+-+..+++.
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 444555544432 2233444445565543 3444445544332110 1223444566777666666654
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.75 E-value=63 Score=27.75 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 004733 555 SWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQ-ATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA 624 (733)
Q Consensus 555 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 624 (733)
.|-..+..+ ..+....+..+|..|..+| +--.. .-|......+...|++++|.++|+.-++. +-.|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKG-IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHT-SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 344444433 2344668888888888888 65554 34677777788888888898888888877 55663
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=64.35 E-value=25 Score=33.94 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=9.4
Q ss_pred HhHhcCChHHHHHHHHh
Q 004733 232 MYFNCGNVVDACKVFEE 248 (733)
Q Consensus 232 ~~~~~~~~~~a~~~~~~ 248 (733)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455666655555554
No 288
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.97 E-value=87 Score=28.56 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004733 324 SVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQS 382 (733)
Q Consensus 324 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 382 (733)
.+-...+.++.+.|+......+.+.+..++ .....+.++.+.|+. .++..+.++..
T Consensus 207 ~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 207 EVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 333444555555565444444444444444 233445566666653 45555555544
No 289
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=63.89 E-value=60 Score=28.47 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=43.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCc---ccHHHHHHHHhccchhhhhhhHHHHHHHcccccC-----c--hhhHh
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDI---YSLSTTLAACANLRNAAFGNQLHAYALRAGLKAY-----P--HVANT 97 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~--~~~~~ 97 (733)
|...++.|+.+....+++. .|..++. .-.+.|..| +..|+.+.+..++ +.|..+. . ..-..
T Consensus 7 L~~A~~~g~~~~v~~Ll~~----~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF----EGCEVHQRGAMGETALHIA-ALYDNLEAAMVLM----EAAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT----TCSCTTCCCTTSCCHHHHH-HHTTCHHHHHHHH----HHCGGGGGCCCCSTTTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHh----cCCCcccCCCCCCCHHHHH-HHcCCHHHHHHHH----HcCchhccccccccCCCCcC
Confidence 4445667776655555443 2333332 223344434 3455555444433 3443321 0 12334
Q ss_pred HHHHHhhccChHHHHHHHHhcCCCC
Q 004733 98 ILSLYKNARDLVSVKRVFSEIQNPD 122 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~ 122 (733)
.+......|+.+-++.+++.+..++
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~~ 102 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASVS 102 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 5555566777777777777765544
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=62.89 E-value=32 Score=31.13 Aligned_cols=119 Identities=12% Similarity=-0.045 Sum_probs=60.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCcc-------cHHHHHHHHh--ccchhhhhhhHHHHHHHccc---------c
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDIY-------SLSTTLAACA--NLRNAAFGNQLHAYALRAGL---------K 89 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~ 89 (733)
|...++.|+.+....+++.+... |..++.. -.+.|..|+. +.|+.+.+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34456677888777777655332 3333322 2234444432 45666666555554322110 0
Q ss_pred cCchhhHhHHHHHhhccChHHHHHHHHhcCCCCcch----------------hhHHHHHhhccCChhHHHHHhc
Q 004733 90 AYPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYS----------------WTTFLSACTKMGHVDYACEVFD 147 (733)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~ 147 (733)
.....-.+.+...+..|+.+-++-+++.+..++... -...+...+..|+.+-+..+++
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 000122344555566677777777777665544332 2223344455666666666666
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.87 E-value=94 Score=31.44 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCCcchhhHHHHHHHHHcCCChHHHHHHHHHH
Q 004733 16 TSKELLLKLNISLANLSRSGHYQDALHLFVQI 47 (733)
Q Consensus 16 ~~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~~ 47 (733)
....-...+|.+++.|...+.++.|..+.++.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 33445678999999999999999999999988
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.61 E-value=89 Score=28.68 Aligned_cols=40 Identities=18% Similarity=-0.041 Sum_probs=21.5
Q ss_pred HHHHcccccCchhhHhHHHHHhhccChHHHHHHHHhcCCC
Q 004733 82 YALRAGLKAYPHVANTILSLYKNARDLVSVKRVFSEIQNP 121 (733)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (733)
.+++.|..++..--.+.+...+..|+.+-++.+++.+..+
T Consensus 49 ~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 88 (285)
T 3kea_A 49 TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDD 88 (285)
T ss_dssp HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCT
T ss_pred HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 3344455554443444555555666666666666655443
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.68 E-value=1e+02 Score=27.03 Aligned_cols=81 Identities=12% Similarity=-0.039 Sum_probs=36.6
Q ss_pred ccchhhhhhhHHHHHHHcccccCch--hhHhHHHHHhhccChHHHHHHHHhcCCCCcch--hhHHHHHhhccCChhHHHH
Q 004733 69 NLRNAAFGNQLHAYALRAGLKAYPH--VANTILSLYKNARDLVSVKRVFSEIQNPDVYS--WTTFLSACTKMGHVDYACE 144 (733)
Q Consensus 69 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 144 (733)
..|+.+....+++...+.|..++.. ...+.+......|+.+-++.+++.+..++... -...+...+..|+.+-+..
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 97 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 3455555555544444444433321 12233444445556655555555554433211 1122333345566665555
Q ss_pred HhccC
Q 004733 145 VFDKM 149 (733)
Q Consensus 145 ~~~~~ 149 (733)
+++..
T Consensus 98 Ll~~~ 102 (241)
T 1k1a_A 98 LLDSA 102 (241)
T ss_dssp HHHHS
T ss_pred HHHcC
Confidence 55543
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.94 E-value=48 Score=29.19 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=9.2
Q ss_pred HHHHHhhccChHHHHHHHHhc
Q 004733 98 ILSLYKNARDLVSVKRVFSEI 118 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~ 118 (733)
.+......|+.+-++.+++.+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g 99 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYG 99 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT
T ss_pred hhHHHHHcCCHHHHHHHHHcC
Confidence 333334444444444444443
No 295
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=51.82 E-value=21 Score=23.35 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHH-hccchh
Q 004733 37 YQDALHLFVQIHSSHKLKPDIYSLSTTLAAC-ANLRNA 73 (733)
Q Consensus 37 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 73 (733)
.++|++.|-+|++..++ ++..||...++.+ +.-.++
T Consensus 2 ~eEae~aF~~lL~~~~V-~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQV-DSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTC-CSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCC-CCCCcHHHHHHHhccCCCcc
Confidence 46899999999988776 5668999999998 655443
No 296
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.78 E-value=38 Score=30.61 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=54.0
Q ss_pred HHHHHHHhccchhhhhhhHHHHHHHcccccCchhh------HhHHHHHh---hccChHHHHHHHHhcCCCC---------
Q 004733 61 STTLAACANLRNAAFGNQLHAYALRAGLKAYPHVA------NTILSLYK---NARDLVSVKRVFSEIQNPD--------- 122 (733)
Q Consensus 61 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~~---~~~~~~~a~~~~~~~~~~~--------- 122 (733)
..|..+ ++.|+.+....+++.+.+.|..++...+ .+.+.... +.|+.+-++.+++.+..++
T Consensus 7 ~~L~~A-~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 7 PILFDI-VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHH-HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHH-HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 344444 4678999999999988888887775442 23344333 6688888888887653211
Q ss_pred -----cchhhHHHHHhhccCChhHHHHHhccCC
Q 004733 123 -----VYSWTTFLSACTKMGHVDYACEVFDKMP 150 (733)
Q Consensus 123 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 150 (733)
..-.+ .+...+..|+.+-+..+++.-.
T Consensus 86 ~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 86 FRDVYYRGQT-ALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp BCCSSEESBC-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccccCCCC-HHHHHHHcCCHHHHHHHHhCCC
Confidence 12222 3344456677777777666543
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=48.66 E-value=1.1e+02 Score=24.92 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 004733 570 KEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA 624 (733)
Q Consensus 570 ~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 624 (733)
+.+..+|..|..+| +-.... -|......+...|++++|.++|+.-++. +-.|-
T Consensus 82 ~dp~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHG-IGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTT-TTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 34778888888887 655543 4667777777888888888888888776 55553
No 298
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=48.50 E-value=1.1e+02 Score=27.78 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=63.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCC-------CcccHHHHHHHHh--ccchhhhhhhHHHHHHHcc-----ccc---
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKP-------DIYSLSTTLAACA--NLRNAAFGNQLHAYALRAG-----LKA--- 90 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-----~~~--- 90 (733)
|...++.|+.+....+++..... +... +..-.+.|..++. +.|+.+.+..+++.-...+ +..
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRS-KKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHS-CCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHhhc-ccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 34457788988888888766333 2221 3344555655654 3466666655555432211 000
Q ss_pred -CchhhHhHHHHHhhccChHHHHHHHHhcCCCCcch----------------hhHHHHHhhccCChhHHHHHhc
Q 004733 91 -YPHVANTILSLYKNARDLVSVKRVFSEIQNPDVYS----------------WTTFLSACTKMGHVDYACEVFD 147 (733)
Q Consensus 91 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~a~~~~~ 147 (733)
.-..-.+.+...+..|+.+-++.+++.+..++... -...+...+..|+.+-+..+++
T Consensus 96 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01123345555566778887877777766544321 1223344455666666666666
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.52 E-value=51 Score=33.31 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=44.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHhcCCCCChh------hHH-HHHHHHHhhCCHHHHHHHHHHHhccCCCCc
Q 004733 625 EDHLSCMLDLLGRAGYLDEAERVINSQHIQARSD------NWW-ALFSACAAHGNLRLGRIIAGLLLEREQDKP 691 (733)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 691 (733)
...++.+++.|...+.++.|..++.+...+.... .|. -+...+...+++.+|.+.+..+...-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3366778888888888888888888876332211 122 123345567788888888888887777654
No 300
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.51 E-value=92 Score=29.81 Aligned_cols=16 Identities=0% Similarity=-0.041 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHHHh
Q 004733 333 YSSCGKIDEACMIFAR 348 (733)
Q Consensus 333 ~~~~g~~~~a~~~~~~ 348 (733)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3455666555555554
No 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=42.64 E-value=1.6e+02 Score=27.56 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHhcCCCCChh--hHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 004733 648 INSQHIQARSD--NWWALFSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLKRT 720 (733)
Q Consensus 648 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 720 (733)
|......|... +.+..+....+.+++..|-.+.++++++.|... ..++|++++..-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 44444445433 456777788999999999999999999998632 234566666655543
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.43 E-value=54 Score=28.96 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=16.2
Q ss_pred HHHHhhcCChhHHHHHHHHHHHcCCCCC
Q 004733 161 ITGCTENGYEDIGIGLFREMHKLDVRRD 188 (733)
Q Consensus 161 i~~~~~~~~~~~a~~~~~~m~~~~~~~~ 188 (733)
+...++.|+.+-+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344556676666666666655555443
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.19 E-value=1.3e+02 Score=24.50 Aligned_cols=66 Identities=9% Similarity=0.052 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCC---cccHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChhh
Q 004733 326 SNAAITMYSSCGKIDEACMIFARLQEKD---IVSWNTMISTYAQRNL--GRSAILAYLEMQSVGIRPDEFT 391 (733)
Q Consensus 326 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 391 (733)
.+.++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3677888999999999999999997652 1223344444444332 4567788888887776554443
No 304
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.18 E-value=74 Score=27.02 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHH
Q 004733 664 FSACAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNI 700 (733)
Q Consensus 664 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 700 (733)
+..|.+.|.+++|..++++.....|.+...-..|..+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3446666666666666666666555544444444433
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.76 E-value=1.5e+02 Score=24.51 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 004733 571 EAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPA 624 (733)
Q Consensus 571 ~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~ 624 (733)
.+..+|..|..+| +-.... -|......+...|++.+|.++|+.-++. +-.|.
T Consensus 78 ~p~~if~~L~~~~-IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQG-IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTT-SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 3667888888888 655543 4666777777888888888888888877 65664
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.18 E-value=1.2e+02 Score=26.49 Aligned_cols=33 Identities=6% Similarity=-0.139 Sum_probs=21.7
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 004733 655 ARSDNWWALFSACAAHGNLRLGRIIAGLLLERE 687 (733)
Q Consensus 655 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 687 (733)
.-...|......+...|++++|..+++..++..
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 334456666666777777777777777776654
No 307
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.84 E-value=78 Score=32.06 Aligned_cols=52 Identities=6% Similarity=-0.157 Sum_probs=37.5
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 667 CAAHGNLRLGRIIAGLLLEREQDKPSVYVLLSNIYAAAGLWEEAANIRELLK 718 (733)
Q Consensus 667 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 718 (733)
..-...++.|...|.++....|++...|+.||.+....|+.-+|.-+|-+-.
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444566778888888888888888888888887777777777665554433
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.58 E-value=2.3e+02 Score=31.68 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=73.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhc
Q 004733 559 LISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRA 638 (733)
Q Consensus 559 l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 638 (733)
++..+...|.++-|.++..- ++.++..-..+..+|...|++++|..+|+++-. |+..+.....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~--------- 878 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFA--------- 878 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCG---------
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCccccc---------
Confidence 55666677777655543321 233443333556677888888888888887642 4433221100
Q ss_pred CChHHHHHHHHhcCCCC-ChhhHHHHHHHHHhhCCHHHHHHHHHHHhcc-CCCCch----HHHHHHHHHHhcC
Q 004733 639 GYLDEAERVINSQHIQA-RSDNWWALFSACAAHGNLRLGRIIAGLLLER-EQDKPS----VYVLLSNIYAAAG 705 (733)
Q Consensus 639 g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~----~~~~l~~~~~~~g 705 (733)
..+....++....... ...-|..++..+-+++-++-+.++.+.+++. .++++. .|..+..+.+..|
T Consensus 879 -~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 -VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -chhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011222222222111 1225677888888999999999999999874 355554 4555555555554
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.52 E-value=1.6e+02 Score=26.82 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=78.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCch--hhHhHHHHHhhc
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH--VANTILSLYKNA 105 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 105 (733)
|...+..|+.+-+..+++. |..++...-.+.+...+..|+.+.+ +.+++.|..++.. .-.+.+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT-----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC-----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3345667887765555543 3333332112233334455665544 4455667766542 223456666778
Q ss_pred cChHHHHHHHHhcCCCCcc---hhhHHHHHhhccCChhHHHHHhccCCCC-ChhhHHHHHHHHhhcCChhHHHHHHHH
Q 004733 106 RDLVSVKRVFSEIQNPDVY---SWTTFLSACTKMGHVDYACEVFDKMPDR-DLPVYNAMITGCTENGYEDIGIGLFRE 179 (733)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 179 (733)
|+.+-++-+++.+..++.. -+...+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++.
T Consensus 106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 8888888888887654432 2234555666778888777777665433 221233344444566666555444443
No 310
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=39.00 E-value=1.7e+02 Score=24.32 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhc-----------------cCCCCchH-HHHHHH
Q 004733 638 AGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLE-----------------REQDKPSV-YVLLSN 699 (733)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------~~p~~~~~-~~~l~~ 699 (733)
.|.+..++-++.. -....+..--.-+|.+.+|+..|+..++..++ .+|.|... +..++.
T Consensus 46 ngEY~R~Lf~L~~---lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 46 NGEYTRALFHLHK---LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp TTCHHHHHHHHHT---CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred cchHhHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Q ss_pred HHHhcCChHHHHHHHHH
Q 004733 700 IYAAAGLWEEAANIREL 716 (733)
Q Consensus 700 ~~~~~g~~~~A~~~~~~ 716 (733)
++...|+.+||++++..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
No 311
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=38.15 E-value=1e+02 Score=24.63 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=55.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCch--hhHhHHHHHhh
Q 004733 27 SLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH--VANTILSLYKN 104 (733)
Q Consensus 27 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 104 (733)
.+...+..|+.+....+++.. .......+..-.+.|.. +..|+.+.+ +.+++.|..++.. .-.+.+.....
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~--~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV--MMFGSTAIA----LELLKQGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH--SCTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH--HHcCCHHHH----HHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 344456677877777766651 11111222222333332 445555433 3344455554432 22344555556
Q ss_pred ccChHHHHHHHHhcCCCCc---chhhHHHHHhhccCChhHHHHHhcc
Q 004733 105 ARDLVSVKRVFSEIQNPDV---YSWTTFLSACTKMGHVDYACEVFDK 148 (733)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 148 (733)
.|+.+-++-+++.+..++. .-.+ .+...++.|+.+-+.-+++.
T Consensus 78 ~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHcCCCCCCcCCCCCc-HHHHHHHhChHHHHHHHHhc
Confidence 6777777766666554332 1222 23333455666666655554
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.13 E-value=1.4e+02 Score=23.34 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCc---ccHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChhh
Q 004733 327 NAAITMYSSCGKIDEACMIFARLQEKDI---VSWNTMISTYAQRNL--GRSAILAYLEMQSVGIRPDEFT 391 (733)
Q Consensus 327 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 391 (733)
..++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 6678889999999999999999976521 223344444444432 3567788888887776555443
No 313
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=38.08 E-value=2.1e+02 Score=25.37 Aligned_cols=116 Identities=13% Similarity=-0.002 Sum_probs=61.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCCCCC-------cccHHHHHHHHhc--cchhhhhhhHHHHHHHcccccCc-----
Q 004733 27 SLANLSRSGHYQDALHLFVQIHSSHKLKPD-------IYSLSTTLAACAN--LRNAAFGNQLHAYALRAGLKAYP----- 92 (733)
Q Consensus 27 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~----- 92 (733)
.|...++.|+.+....+++.+... |..++ ..-.+.|..|+.. .|+.+.+..+++. |..++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~----g~~~~~~~~~~ 79 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI----DKDSGNPKPLV 79 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH----HHHTTCSSCGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc----CCcccchhhhc
Confidence 344456777877666666655332 33333 2334444444432 2565555544443 332221
Q ss_pred --------hhhHhHHHHHhhccChHHHHHHHHhcCCCCcch---------------hhHHHHHhhccCChhHHHHHhc
Q 004733 93 --------HVANTILSLYKNARDLVSVKRVFSEIQNPDVYS---------------WTTFLSACTKMGHVDYACEVFD 147 (733)
Q Consensus 93 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~a~~~~~ 147 (733)
..-.+.+...+..|+.+-++.+++.+..++... -...+...+..|+.+-+.-+++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 123455566667778887887777766544321 1233344455667776666666
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.25 E-value=1.9e+02 Score=25.68 Aligned_cols=28 Identities=14% Similarity=-0.105 Sum_probs=16.6
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 004733 690 KPSVYVLLSNIYAAAGLWEEAANIRELL 717 (733)
Q Consensus 690 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 717 (733)
.+.........+.+.|+-++|.++|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444555666777777777766443
No 315
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.47 E-value=2.1e+02 Score=24.75 Aligned_cols=176 Identities=14% Similarity=-0.007 Sum_probs=89.2
Q ss_pred hHHHHHhhccChHHHHHHHHhcCCCCcch---hhHHHHHhhccCChhHHHHHhccCCCCC---hhhHHHHHHHHhhcCCh
Q 004733 97 TILSLYKNARDLVSVKRVFSEIQNPDVYS---WTTFLSACTKMGHVDYACEVFDKMPDRD---LPVYNAMITGCTENGYE 170 (733)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 170 (733)
..+......|+.+-++.+++.+..++... -...+...+..|+.+-+..+++.-..++ ...++ .+...++.|+.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~ 122 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS-CIHLAAQFGHT 122 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCHH
Confidence 45556666777777777777765533211 2234555667888888888877543332 22222 23334455665
Q ss_pred hHHHHHHHHHHHcCCCCCh---hhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHH---HHHHHHHhHhcCChHHHHH
Q 004733 171 DIGIGLFREMHKLDVRRDN---YSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSV---VNALITMYFNCGNVVDACK 244 (733)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~ 244 (733)
+ +++.+.+.|..++. .-.+.+..++..+.... +.+.+.+.|..++... -.+.+...+..|+.+-+.-
T Consensus 123 ~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~---~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 195 (240)
T 3eu9_A 123 S----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD---PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195 (240)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST---THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred H----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH---HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH
Confidence 4 44445555655433 22334444442233222 2233444454333211 1123455567788777766
Q ss_pred HHHhhhcCCCCccc--hHHHHHHHHhcCChHHHHHHHHHH
Q 004733 245 VFEEAKGYVCDHIS--YNVMMDGLASVGRVEEALIRFRDM 282 (733)
Q Consensus 245 ~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m 282 (733)
+++.-.. ++... -.+-+....+.|+.+-+..+++..
T Consensus 196 Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 196 LLEAGAN--VDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHTCC--TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHcCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 6665322 32221 123455567777776655555443
No 316
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.78 E-value=55 Score=24.16 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHHHH
Q 004733 536 GDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEAVS 574 (733)
Q Consensus 536 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 574 (733)
...+.|.++++.++.+++..|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467889999999999999999999999987777655543
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.56 E-value=1.7e+02 Score=25.31 Aligned_cols=115 Identities=16% Similarity=0.142 Sum_probs=54.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCch--hhHhHHHHHhhc
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH--VANTILSLYKNA 105 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 105 (733)
+...++.|+.+....++..-... ...++..-.+.|..++ ..|+.+ +.+.+++.|..++.. .-.+.+......
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~-~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWAC-SAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHH-HcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 55567778887777776653111 1122333333333333 344443 333444556555432 223344555566
Q ss_pred cChHHHHHHHHhcCCCCcch--hhHHHHHhhccCChhHHHHHhcc
Q 004733 106 RDLVSVKRVFSEIQNPDVYS--WTTFLSACTKMGHVDYACEVFDK 148 (733)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 148 (733)
|+.+-++.+++.+..++... -...+...+..|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 67666666666655433211 11223333455555555555543
No 318
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.23 E-value=1.7e+02 Score=22.95 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=41.3
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhhhcCCC---CccchHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChh
Q 004733 226 VNALITMYFNCGNVVDACKVFEEAKGYVC---DHISYNVMMDGLASVGR--VEEALIRFRDMLVASLRPSEL 292 (733)
Q Consensus 226 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 292 (733)
...++.-|...|+.++|.+.++++.. | .......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35577788888999999999988764 4 12233344444444432 356777888887776554443
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.10 E-value=2.1e+02 Score=23.99 Aligned_cols=112 Identities=7% Similarity=0.033 Sum_probs=52.9
Q ss_pred HHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchh--hHhHHHHHhhccCh
Q 004733 31 LSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHV--ANTILSLYKNARDL 108 (733)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 108 (733)
.+..|+.+....++..- ...--..|..-.+.|..++ ..|+.+ +.+.+++.|..++... -...+......|+.
T Consensus 12 A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAV-HNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHH-HcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 45677777666665432 1001112222233444343 344443 3344455566554322 23445555566777
Q ss_pred HHHHHHHHhcC-CCC---cchhhHHHHHhhccCChhHHHHHhccC
Q 004733 109 VSVKRVFSEIQ-NPD---VYSWTTFLSACTKMGHVDYACEVFDKM 149 (733)
Q Consensus 109 ~~a~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (733)
+-++.+++... .++ ..-.+ .+...++.|+.+-+..+++.-
T Consensus 86 ~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 86 EILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcC
Confidence 77777764432 221 11112 233344566666666666554
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.04 E-value=2.3e+02 Score=24.45 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=10.2
Q ss_pred HHHhhccCChhHHHHHhcc
Q 004733 130 LSACTKMGHVDYACEVFDK 148 (733)
Q Consensus 130 ~~~~~~~g~~~~a~~~~~~ 148 (733)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444555666666555543
No 321
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.61 E-value=1.2e+02 Score=26.94 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHh
Q 004733 26 ISLANLSRSGHYQDALHLFVQIHS 49 (733)
Q Consensus 26 ~~l~~~~~~~~~~~a~~~~~~~~~ 49 (733)
--|.++....++++|++++++...
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457788999999999999998743
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.38 E-value=2.5e+02 Score=27.86 Aligned_cols=71 Identities=17% Similarity=0.035 Sum_probs=40.6
Q ss_pred HHHhCCccchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 004733 412 VFINGIITNIQVSNALISAYAKNERIKQAYQIFHNMSP---RNIITWNTLINGFLLNGFPVQGLQHFSELLMSE 482 (733)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 482 (733)
..+.|++-....|..-.+.+...|++++|-++-...+. ++..|.+.+-..-...|+..-.+.+|..+.+.|
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34445555555556666777788888888887766652 344444433333333455555555666555554
No 323
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=33.18 E-value=64 Score=25.96 Aligned_cols=18 Identities=0% Similarity=-0.167 Sum_probs=8.9
Q ss_pred hhccChHHHHHHHHhcCC
Q 004733 103 KNARDLVSVKRVFSEIQN 120 (733)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~ 120 (733)
+..|+.+-++.+++.+..
T Consensus 43 ~~~~~~~~v~~Ll~~g~~ 60 (156)
T 1bd8_A 43 MMFGSTAIALELLKQGAS 60 (156)
T ss_dssp SCTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHCCCC
Confidence 444555555555554433
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=32.34 E-value=2.8e+02 Score=24.97 Aligned_cols=127 Identities=12% Similarity=0.002 Sum_probs=57.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHhhcCCCCCchHH
Q 004733 550 EKDTISWNALISAYAQHGEGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAG-LVDDGTRIFDSMVNDYGFIPAEDHL 628 (733)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~p~~~~~ 628 (733)
.++...-...+.++...++.+ +...+.++.+ .++...-...+.++...| ....+...+..+.. .++..+-
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR 209 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVR 209 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHH
Confidence 455444444455555555422 3344444433 344443333333333333 12344444444432 3455555
Q ss_pred HHHHHHhhhcCChHHHHHHHHhcCCCCChhhHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 004733 629 SCMLDLLGRAGYLDEAERVINSQHIQARSDNWWALFSACAAHGNLRLGRIIAGLLLEREQD 689 (733)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 689 (733)
...+.++.+.|+.+-...+...+. .++ .-...+.++...|+ ..+...+..+++..++
T Consensus 210 ~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 210 IEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCCC
Confidence 556666666665433333333333 333 22344555666666 3455666666554443
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.23 E-value=1.4e+02 Score=24.33 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=40.4
Q ss_pred HHHHHHHhHhcCChHHHHHHHHhhhcCCC---CccchHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChh
Q 004733 226 VNALITMYFNCGNVVDACKVFEEAKGYVC---DHISYNVMMDGLASVGR--VEEALIRFRDMLVASLRPSEL 292 (733)
Q Consensus 226 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 292 (733)
...++.-|...|+.++|.+.++++.. | ...+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35577778888899999999988764 4 12233344444444322 455777777777766544433
No 326
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.10 E-value=3.1e+02 Score=25.46 Aligned_cols=216 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCchhhHhHHHHH
Q 004733 23 KLNISLANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPHVANTILSLY 102 (733)
Q Consensus 23 ~~n~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (733)
....+|+-|...|+.++|...++++ ..+...|.......-+..=.+....+.+..++..+. .++-...++...+...+
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el-~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDL-NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTT-CCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh-CCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q ss_pred hhccChHH-------------HHHHHHhcCC-----------CCcchhhHHHHHhhccCChhHHHHHhccCCCCChh---
Q 004733 103 KNARDLVS-------------VKRVFSEIQN-----------PDVYSWTTFLSACTKMGHVDYACEVFDKMPDRDLP--- 155 (733)
Q Consensus 103 ~~~~~~~~-------------a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--- 155 (733)
....++.- |..+.+.... .+...-..+-.+-..........++-+-...++..
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ 162 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSV 162 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCH
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCH
Q ss_pred -----hHHHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhh-c-cCchHHHHHHHHHHHHhCCCCchHHHHH
Q 004733 156 -----VYNAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVC-D-AGLLEFGRQLHSLVTKSGFSCLVSVVNA 228 (733)
Q Consensus 156 -----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 228 (733)
..+.++.-|...|+.++|.+.++++..-...+........+..= . ....+....++..+.+.|+-+.......
T Consensus 163 eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 163 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_pred HHHHhHhcCChH
Q 004733 229 LITMYFNCGNVV 240 (733)
Q Consensus 229 li~~~~~~~~~~ 240 (733)
+...+....+..
T Consensus 243 f~~vl~~l~Dl~ 254 (307)
T 2zu6_B 243 YERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhccHhh
No 327
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.86 E-value=3.6e+02 Score=25.75 Aligned_cols=239 Identities=9% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHhhcc---hHHHHHHHHHHHHhCCccchhHHHHHHHHHHhc
Q 004733 358 NTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFTFGSLLASSGF---IEMVEMIHAFVFINGIITNIQVSNALISAYAKN 434 (733)
Q Consensus 358 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (733)
..+|.-|...++.++|...++++......|.......-...-.+ .+.+-.++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CCHH-------------HHHHHHhhcCCCChhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccC
Q 004733 435 ERIK-------------QAYQIFHNMSPRNIITWNTLINGFLLNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARIS 501 (733)
Q Consensus 435 g~~~-------------~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 501 (733)
.+.. -|..+.+.+.++.-..-...-. ....+.++++.....=-.+ .....+-+.....+
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~------~~~~~~~~l~~a~~~L~~~--~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV------DCVQARAALDKATVLLSMS--KGGKRKDSVWGSGG 208 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---------CCHHHHHHHHHHHHHHTC-----------CCCCCC
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc------cchHHHHHHHHHHHHHhcc--chHHHHHHhcCCCC
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCh--HHHHHHH
Q 004733 502 SLRHGKQIHGYVLKNNLISKMSLGNAMITLYAKCGDLDCSLRVFNMMIEK---DTISWNALISAYAQHGEG--KEAVSCF 576 (733)
Q Consensus 502 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~A~~~~ 576 (733)
......++-+.+ +.++.=|...|+.++|.+.++++..| .......+..++-+.++. +....++
T Consensus 209 ~~~~veelkkki------------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL 276 (358)
T 3eiq_C 209 GQQPVNHLVKEI------------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLL 276 (358)
T ss_dssp SSSCHHHHHHHH------------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCccHHHHHHHH------------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHH
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHhccCCHH----HHHHHHHHhHhh
Q 004733 577 KAMQDVGRIKPDQATFTAVLSACSHAGLVD----DGTRIFDSMVND 618 (733)
Q Consensus 577 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~----~A~~~~~~~~~~ 618 (733)
..+...| +-+.......+...+....+.. .|..++.++..+
T Consensus 277 ~~L~~~g-lls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 277 KSLWKSS-TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHCC-CCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 328
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.71 E-value=2.3e+02 Score=24.24 Aligned_cols=99 Identities=8% Similarity=-0.057 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHhC---CCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC-----hHHHHHHHHHHHHcCCCC
Q 004733 449 PRNIITWNTLINGFLLN---GFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS-----LRHGKQIHGYVLKNNLIS 520 (733)
Q Consensus 449 ~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 520 (733)
.++...+-.+|+++.+. .+++.|+-.+.+|++.| .|....-..++.+....|. ...|...++....-|.+-
T Consensus 8 Dk~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 8 DKNGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 004733 521 KMSLGNAMITLYAKCGDLDCSLRVFNMM 548 (733)
Q Consensus 521 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 548 (733)
........+--++.+-+-..+...++..
T Consensus 87 ~~i~LaqaviyLA~aPKSNs~y~A~~~A 114 (204)
T 2r9g_A 87 ARIPLADVVVDLCLSPKSNSAYMALDAA 114 (204)
T ss_dssp THHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHH
No 329
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.52 E-value=72 Score=22.18 Aligned_cols=40 Identities=0% Similarity=-0.042 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 004733 244 KVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDML 283 (733)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 283 (733)
.++.+++++.|++.||+-+...+-+..-..+++.+.+++-
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5677888998999999998876655555566666666543
No 330
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.30 E-value=2.1e+02 Score=25.08 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 004733 570 KEAVSCFKAMQDVGRIKPDQA-TFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIP 623 (733)
Q Consensus 570 ~~A~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p 623 (733)
+.+..+|..|..+| +--... -|......+...|++.+|.++|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~-IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHH-IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTT-CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCC-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 46678888888887 655543 4666777777888888888888888777 5555
No 331
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=30.08 E-value=2.2e+02 Score=25.50 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=26.1
Q ss_pred hHHHHHhhccChHHHHHHHHhcCCCCcc---hhhHHHHHhhccCChhHHHHHhccC
Q 004733 97 TILSLYKNARDLVSVKRVFSEIQNPDVY---SWTTFLSACTKMGHVDYACEVFDKM 149 (733)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 149 (733)
+.+...+..|+.+-++.+++.+..++.. -++ .+...++.|+.+-+..+++.-
T Consensus 47 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-pL~~A~~~~~~~~v~~Ll~~~ 101 (282)
T 1oy3_D 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHT-ALHLACRVRAHTCACVLLQPR 101 (282)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC-HHHHHTTTTCHHHHHHHSSSC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCcchhHhhhccC
Confidence 3444445556666666666655443321 222 233344556666666665543
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.59 E-value=1.1e+02 Score=25.20 Aligned_cols=71 Identities=18% Similarity=0.067 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHc--ccccCchhhHhHHHHHhhccCh
Q 004733 37 YQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRA--GLKAYPHVANTILSLYKNARDL 108 (733)
Q Consensus 37 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 108 (733)
...+++-+.+..+..|..+.. .-..++..+...+.+..|.++++.+.+. +..++..|.-.-+..+.+.|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 456677777766776776643 3455666676767778888888888776 6666655555555555555533
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.52 E-value=1.6e+02 Score=21.32 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.6
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHhcCChHHH
Q 004733 535 CGDLDCSLRVFNMMIEKDTISWNALISAYAQHGEGKEA 572 (733)
Q Consensus 535 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 572 (733)
....++|.++++.+..++...|..++.++...+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 46678888888888888888888888888877654433
No 334
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=27.81 E-value=2.5e+02 Score=25.52 Aligned_cols=31 Identities=6% Similarity=-0.271 Sum_probs=0.0
Q ss_pred CCCcchhhHHHHHHHHHcCCChHHHHHHHHH
Q 004733 16 TSKELLLKLNISLANLSRSGHYQDALHLFVQ 46 (733)
Q Consensus 16 ~~~~~~~~~n~~l~~~~~~~~~~~a~~~~~~ 46 (733)
..+.+.....+.+...+..|+..+..++...
T Consensus 7 ~~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~ 37 (285)
T 3d9h_A 7 HHHHSSGLVPRGSHMASMDGKQGGMDGSKPA 37 (285)
T ss_dssp -------------------------------
T ss_pred cccccchHHHHHHHHHhhcCCCCCcccCCCC
Confidence 3445556666777777778887776665544
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=26.71 E-value=1.1e+02 Score=27.29 Aligned_cols=55 Identities=7% Similarity=-0.141 Sum_probs=37.1
Q ss_pred HHhccchhhhhhhHHHHHHHcccccCc------hhhHhHHHHHhhc---cChHHHHHHHHhcCC
Q 004733 66 ACANLRNAAFGNQLHAYALRAGLKAYP------HVANTILSLYKNA---RDLVSVKRVFSEIQN 120 (733)
Q Consensus 66 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 120 (733)
..+..|+.+....+++.+.+.|..++. ..-.+.+...+.. |+.+-++.+++.+..
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 345678888888888888888877654 1223445555555 777777777776543
No 336
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.46 E-value=2e+02 Score=22.24 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=6.3
Q ss_pred chhhHhHHHHHhhccC
Q 004733 92 PHVANTILSLYKNARD 107 (733)
Q Consensus 92 ~~~~~~l~~~~~~~~~ 107 (733)
+.+-...+.++.+.++
T Consensus 56 ~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 56 WRIRGAAAWIIGNFQD 71 (131)
T ss_dssp HHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3333334444444433
No 337
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=26.19 E-value=3.4e+02 Score=24.02 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=7.9
Q ss_pred hHhcCChHHHHHHHHh
Q 004733 233 YFNCGNVVDACKVFEE 248 (733)
Q Consensus 233 ~~~~~~~~~a~~~~~~ 248 (733)
.+..|+.+-+..+++.
T Consensus 141 A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 141 ACENQQRACVKKLLES 156 (261)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHc
Confidence 3345555555555444
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.14 E-value=61 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.9
Q ss_pred CChhHHHHHhccCCCCChhhHHHHHHHHhhcCChhHHH
Q 004733 137 GHVDYACEVFDKMPDRDLPVYNAMITGCTENGYEDIGI 174 (733)
Q Consensus 137 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 174 (733)
.+.+.|.++++.++.++..+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888888888888888886656554443
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.03 E-value=1.8e+02 Score=25.13 Aligned_cols=50 Identities=4% Similarity=0.215 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhHhhcCCCCCc-hHHH-----HHHHHhhhcCChHHHHHHHHhcCCC
Q 004733 605 VDDGTRIFDSMVNDYGFIPAE-DHLS-----CMLDLLGRAGYLDEAERVINSQHIQ 654 (733)
Q Consensus 605 ~~~A~~~~~~~~~~~~~~p~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~ 654 (733)
++.|+.+|+.+.+...+..+. .... ..+-.|.+.|.+++|.+++++.-..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 678899999888772221111 1122 2344567788888888888876633
No 340
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.65 E-value=2.4e+02 Score=24.04 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=34.2
Q ss_pred HHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 457 TLINGFL---LNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 457 ~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
.+|+++. +..+++.|+-.+.+|++.|..|....-..++.+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3455553 467899999999999999988877777777766665553
No 341
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.38 E-value=4.1e+02 Score=24.65 Aligned_cols=288 Identities=11% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HhHHHHHhhccChHHHHHHHHhcCCCCcchhh---HHHHHhhccCChhHHHHHhccCCCCChh--hHHHHHHHHhhcCCh
Q 004733 96 NTILSLYKNARDLVSVKRVFSEIQNPDVYSWT---TFLSACTKMGHVDYACEVFDKMPDRDLP--VYNAMITGCTENGYE 170 (733)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~ 170 (733)
+..+....+.|+.+-++.+++.+..++...-. +-+...++.|+.+-+.-+++.-..++.. .....+......+..
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 105 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSV 105 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccc
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHH--------HHHHhHhcCChHHH
Q 004733 171 DIGIGLFREMHKLDVRRDNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNA--------LITMYFNCGNVVDA 242 (733)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------li~~~~~~~~~~~a 242 (733)
.....+...-.... ..|..-.+.+..++..|..+.+..+++.-..-........... .+...++.|+.+-+
T Consensus 106 ~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v 184 (337)
T 4g8k_A 106 KLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 184 (337)
T ss_dssp HHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred hhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Q ss_pred HHHHHh-hhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHcc-CchhHHHHHHHHHHh
Q 004733 243 CKVFEE-AKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRP---SELTFVSVMSACL-CPRVGYQVHAQAMKS 317 (733)
Q Consensus 243 ~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~t~~~ll~~~~-~~~~~~~~~~~~~~~ 317 (733)
..++++ -..+..-...-.+-+...+..+.......+.+.+.+.|..+ +..-.+.+..++. ........+-.....
T Consensus 185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~ 264 (337)
T 4g8k_A 185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264 (337)
T ss_dssp HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC
T ss_pred HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC
Q ss_pred CCCcchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 004733 318 GFEAYTSVSNAAITMYSSCGKIDEACMIFARLQEKDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPDEFT 391 (733)
Q Consensus 318 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 391 (733)
.+.....--.+-+...++.|+.+-+.-+++.-..+|..+ .+..-++.|+.+ +++.+.+.|-.||...
T Consensus 265 ~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 265 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDFHP 331 (337)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC----
T ss_pred cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCCCC
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.38 E-value=3.4e+02 Score=23.32 Aligned_cols=56 Identities=11% Similarity=-0.061 Sum_probs=29.3
Q ss_pred hHhcCChHHHHHHHHhhhcC-CCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 004733 233 YFNCGNVVDACKVFEEAKGY-VCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRP 289 (733)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 289 (733)
.+..|+.+-+..+++.-..+ ..|..-. +-+...+..|+.+-+..+++.+.+.|..+
T Consensus 128 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 128 AACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34455555555555432210 0122222 33455567777777777777777776544
No 343
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.14 E-value=3.4e+02 Score=23.20 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=36.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHhccchhhhhhhHHHHHHHcccccCch-----hhHhHHHHH
Q 004733 28 LANLSRSGHYQDALHLFVQIHSSHKLKPDIYSLSTTLAACANLRNAAFGNQLHAYALRAGLKAYPH-----VANTILSLY 102 (733)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~ 102 (733)
+...++.|+.+....+++.-... ....|..-.+.|..++ ..|+.+ +.+.+++.|..++.. .-...+...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSV-SFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHH-HTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHH-HcCCHH----HHHHHHhccccccccccCCCCCCCHHHHH
Confidence 34455667766666555543111 1112333233333333 334433 333444445222221 122334444
Q ss_pred hhccChHHHHHHHHhc
Q 004733 103 KNARDLVSVKRVFSEI 118 (733)
Q Consensus 103 ~~~~~~~~a~~~~~~~ 118 (733)
...|+.+-++.+++.+
T Consensus 80 ~~~~~~~~~~~Ll~~g 95 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRP 95 (228)
T ss_dssp HHHCCHHHHHHHHSSS
T ss_pred HHcCCHHHHHHHHhCC
Confidence 4555555555555554
No 344
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.58 E-value=2.9e+02 Score=23.83 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=36.7
Q ss_pred hHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHhHHHHHHHhcccCC
Q 004733 454 TWNTLINGFL---LNGFPVQGLQHFSELLMSELRPDEYTLSVALSSCARISS 502 (733)
Q Consensus 454 ~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 502 (733)
.+-.+|+++. +..+++.|+-.+.+|++.|..|....-..++.+....|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3445566654 468899999999999999988887777777777666553
No 345
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.47 E-value=3.4e+02 Score=23.53 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=17.7
Q ss_pred HHHHhHhcCChHHHHHHHHhhhcC
Q 004733 229 LITMYFNCGNVVDACKVFEEAKGY 252 (733)
Q Consensus 229 li~~~~~~~~~~~a~~~~~~~~~~ 252 (733)
.+-.|.+.|.+++|.++|++.-+-
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 344577888888888888886653
No 346
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.93 E-value=2e+02 Score=25.06 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=11.7
Q ss_pred HHHHHhhccChHHHHHHHHhcCC
Q 004733 98 ILSLYKNARDLVSVKRVFSEIQN 120 (733)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~ 120 (733)
.+......|+.+-++.+++.+..
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~g~~ 69 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKAGAL 69 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCHHHHHHHHhCCCC
Confidence 44444455555555555555433
No 347
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.56 E-value=1.5e+02 Score=27.14 Aligned_cols=180 Identities=7% Similarity=-0.039 Sum_probs=75.6
Q ss_pred hHHHHHhhccChHHHHHHHHhcCCCCcch--hhHHHHHhhccCChhHHHHHhccCCCC---ChhhHHHHHHHHhhcCChh
Q 004733 97 TILSLYKNARDLVSVKRVFSEIQNPDVYS--WTTFLSACTKMGHVDYACEVFDKMPDR---DLPVYNAMITGCTENGYED 171 (733)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 171 (733)
+.+...+..|+.+.++.+++.+..++... -...+...+..|+.+-+..+++.-... +..-++.+ ...+..|+.+
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~~~~~ 139 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL-FNACVSGSWD 139 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH-HHHHHHTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCHHH
Confidence 34455555666666666666554433211 112233344556666666665543222 11111222 2223334433
Q ss_pred HHHHHHHHHHHcCCCCCh--hhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchH--HHHHHHHHhHhcCChHHHHHHHH
Q 004733 172 IGIGLFREMHKLDVRRDN--YSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVS--VVNALITMYFNCGNVVDACKVFE 247 (733)
Q Consensus 172 ~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 247 (733)
+.+.+.+.|..++. .-.+.+..++..|+.+.+ +.+++.|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 140 ----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 140 ----CVNLLLQHGASVQPESDLASPIHEAARRGHVECV----NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp ----HHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHH----HHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 33333344433321 122233334455555433 3333444333211 00122334456677666666665
Q ss_pred hhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 004733 248 EAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPS 290 (733)
Q Consensus 248 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 290 (733)
.-.....+..-. +.+...++.|+.+ +++.+.+.|..++
T Consensus 212 ~ga~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 212 SGADVNQGKGQD-SPLHAVVRTASEE----LACLLMDFGADTQ 249 (285)
T ss_dssp TTCCTTCCBTTB-CHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred CCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHHCCCCCC
Confidence 533321222222 3344445666654 3333444555443
No 348
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.01 E-value=98 Score=22.50 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=27.6
Q ss_pred cCChhHHHHHhccCCCCChhhHHHHHHHHhhcCChh
Q 004733 136 MGHVDYACEVFDKMPDRDLPVYNAMITGCTENGYED 171 (733)
Q Consensus 136 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 171 (733)
....+.|.++++.++..+..+|..++.++...+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 566778888888888888888888888887766533
No 349
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.83 E-value=69 Score=21.01 Aligned_cols=25 Identities=8% Similarity=0.273 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCcc
Q 004733 34 SGHYQDALHLFVQIHSSHKLKPDIY 58 (733)
Q Consensus 34 ~~~~~~a~~~~~~~~~~~~~~~~~~ 58 (733)
.-+++.|+..|.++.....++|+..
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 5578899999999966656776643
No 350
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.82 E-value=4.8e+02 Score=24.13 Aligned_cols=220 Identities=9% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHhhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcC
Q 004733 158 NAMITGCTENGYEDIGIGLFREMHKLDVRRDNYSFASVLSVCDAGLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCG 237 (733)
Q Consensus 158 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 237 (733)
..-+...++.|+.+....++......--..|..-.+.+..++..|+.+.+..+++. ...+......-.+.+...+..|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g 102 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYG 102 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHCC
Q ss_pred ChHHHHHHHHhhhcCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------------------------
Q 004733 238 NVVDACKVFEEAKGYVCDHISYNVMMDGLASVGRVEEALIRFRDMLVASLRPS--------------------------- 290 (733)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------------------- 290 (733)
+.+-+..+++.-.........-.+.+...+..|+ .++++.+.+.|..|+
T Consensus 103 ~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~ 178 (351)
T 3utm_A 103 HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178 (351)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Q ss_pred ------------------------------hhhHHHHHHHcc-CchhHHHHHHHHHHhCCCcchHHH--HHHHHHHHhcC
Q 004733 291 ------------------------------ELTFVSVMSACL-CPRVGYQVHAQAMKSGFEAYTSVS--NAAITMYSSCG 337 (733)
Q Consensus 291 ------------------------------~~t~~~ll~~~~-~~~~~~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g 337 (733)
....+.+..++. .......+.+.+.+.|..++.... .+.+...++.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 258 (351)
T 3utm_A 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258 (351)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHHhccc---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004733 338 KIDEACMIFARLQE---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPD 388 (733)
Q Consensus 338 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 388 (733)
+.+-+.-+++.-.. .|..-.+.+..+..... .++++.+.+.|..|+
T Consensus 259 ~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~-----~~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH-----LQTCRLLLSYGSDPS 307 (351)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-----HHHHHHHHHcCCCCC
No 351
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.57 E-value=5.1e+02 Score=24.39 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHhHhcCChHHHHHHHHhhhcCCCC---ccchHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC
Q 004733 227 NALITMYFNCGNVVDACKVFEEAKGYVCD---HISYNVMMDGLASV-GRVEEALIRFRDMLVASLRPS 290 (733)
Q Consensus 227 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~ 290 (733)
..++.-|...|+.++|.+.++++.. |. ......+..++-+. ...+.+..++..+.+.|+-+.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~--p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS--PSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC--GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC--cccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 4577778888899998888888764 32 11222222222221 123455667777776665433
No 352
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.55 E-value=3.5e+02 Score=22.46 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=27.9
Q ss_pred HHHhcCCHHHHHHHHHhcc-c---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004733 332 MYSSCGKIDEACMIFARLQ-E---KDIVSWNTMISTYAQRNLGRSAILAYLEMQSVGIRPD 388 (733)
Q Consensus 332 ~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 388 (733)
..+..|+.+....++..-. . .|..-++.+.. .+..|+.+ +++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADIN 66 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCC
Confidence 3456788888888877554 2 23333344433 34455543 4444555565554
No 353
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.19 E-value=2.6e+02 Score=21.41 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHhhhcCChH
Q 004733 568 EGKEAVSCFKAMQDVGRIKPDQATFTAVLSACSHAGLVDDGTRIFDSMVNDYGFIPAEDHLSCMLDLLGRAGYLD 642 (733)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 642 (733)
.+.+|+.-+++... ..+|......++..+... ++.++++.+...+..|+ .+.++...+..+.+.|-.+
T Consensus 3 ~~~~al~~L~e~~~---~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 3 SLARAVERLKAALE---RPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp CHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 45666666666654 345655566666655432 56667777766665566 3556666666666666543
No 354
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.31 E-value=3.6e+02 Score=22.12 Aligned_cols=51 Identities=2% Similarity=-0.259 Sum_probs=28.4
Q ss_pred hhCCHHHHHHHHHHHhccCCCC---chHHHHHHH------HHHhcCChHHHHHHHHHHHh
Q 004733 669 AHGNLRLGRIIAGLLLEREQDK---PSVYVLLSN------IYAAAGLWEEAANIRELLKR 719 (733)
Q Consensus 669 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 719 (733)
..|++=+|-.+++.++...+.. ...|.-|++ .+.+.|+..-|..++++...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466666766777666655433 223333333 23345777777777666544
No 355
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.14 E-value=2e+02 Score=22.95 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHhHhcCC
Q 004733 202 GLLEFGRQLHSLVTKSGFSCLVSVVNALITMYFNCGN 238 (733)
Q Consensus 202 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 238 (733)
+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3344455555555554444444444444455555544
Done!