Query 004734
Match_columns 732
No_of_seqs 315 out of 1613
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 12:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0782 Predicted diacylglycer 100.0 2E-100 5E-105 819.1 15.4 504 76-690 166-697 (1004)
2 KOG1169 Diacylglycerol kinase 100.0 2.7E-99 6E-104 843.5 24.0 603 41-701 3-631 (634)
3 KOG1170 Diacylglycerol kinase 100.0 5E-77 1.1E-81 660.4 10.2 493 49-690 9-793 (1099)
4 PRK13057 putative lipid kinase 100.0 5.5E-42 1.2E-46 365.4 30.1 274 367-690 1-286 (287)
5 PRK11914 diacylglycerol kinase 100.0 1.6E-41 3.6E-46 364.9 29.5 284 363-690 8-305 (306)
6 PRK13337 putative lipid kinase 100.0 1.3E-40 2.8E-45 357.6 29.8 285 363-693 1-298 (304)
7 PRK13059 putative lipid kinase 100.0 3.8E-40 8.3E-45 352.6 30.8 280 363-690 1-294 (295)
8 PRK13054 lipid kinase; Reviewe 100.0 4.7E-40 1E-44 352.7 31.1 282 363-691 3-296 (300)
9 PRK13055 putative lipid kinase 100.0 4.2E-40 9E-45 358.0 31.0 287 363-693 2-305 (334)
10 TIGR03702 lip_kinase_YegS lipi 100.0 3.6E-40 7.8E-45 352.5 29.5 280 365-690 1-289 (293)
11 PRK00861 putative lipid kinase 100.0 6.2E-40 1.3E-44 351.7 31.2 281 363-691 2-299 (300)
12 TIGR00147 lipid kinase, YegS/R 100.0 1.4E-39 3E-44 347.7 29.2 279 363-687 1-293 (293)
13 COG1597 LCB5 Sphingosine kinas 100.0 9.7E-38 2.1E-42 334.1 27.8 284 363-692 2-299 (301)
14 PRK12361 hypothetical protein; 100.0 5.2E-37 1.1E-41 354.4 30.4 280 363-691 242-544 (547)
15 PLN02958 diacylglycerol kinase 100.0 6.9E-37 1.5E-41 346.2 26.5 287 362-688 110-465 (481)
16 PF00609 DAGK_acc: Diacylglyce 100.0 8E-37 1.7E-41 298.9 14.0 158 511-668 1-161 (161)
17 PLN02204 diacylglycerol kinase 100.0 7.8E-33 1.7E-37 312.4 31.4 308 361-691 157-600 (601)
18 KOG1116 Sphingosine kinase, in 99.9 1.1E-24 2.4E-29 242.0 23.1 291 362-689 178-567 (579)
19 smart00045 DAGKa Diacylglycero 99.9 6.7E-24 1.5E-28 207.5 10.5 158 511-668 1-160 (160)
20 smart00046 DAGKc Diacylglycero 99.9 5.4E-21 1.2E-25 179.3 13.1 101 367-468 1-103 (124)
21 PF00781 DAGK_cat: Diacylglyce 99.8 9.4E-20 2E-24 172.0 10.9 99 365-465 1-104 (130)
22 KOG0696 Serine/threonine prote 99.8 4.7E-21 1E-25 203.9 1.3 119 70-210 36-159 (683)
23 KOG1115 Ceramide kinase [Lipid 99.8 5.7E-19 1.2E-23 187.2 14.0 298 352-688 147-508 (516)
24 KOG4236 Serine/threonine prote 99.5 2.1E-15 4.5E-20 165.1 -1.9 116 73-210 139-316 (888)
25 KOG0694 Serine/threonine prote 99.5 1.4E-14 3E-19 164.1 1.4 118 71-210 150-279 (694)
26 KOG1169 Diacylglycerol kinase 99.4 3.9E-14 8.5E-19 160.5 3.7 131 78-234 97-235 (634)
27 KOG4435 Predicted lipid kinase 99.1 3.7E-10 8E-15 120.6 12.1 170 348-526 43-221 (535)
28 PF00130 C1_1: Phorbol esters/ 98.7 9.3E-09 2E-13 81.8 4.2 49 153-210 1-49 (53)
29 PF00130 C1_1: Phorbol esters/ 98.7 1.1E-08 2.4E-13 81.4 2.6 50 80-142 1-52 (53)
30 cd00029 C1 Protein kinase C co 98.6 1.5E-08 3.3E-13 79.3 2.0 48 80-140 1-50 (50)
31 PRK03708 ppnK inorganic polyph 98.5 1.9E-06 4.1E-11 91.9 16.0 246 365-689 2-262 (277)
32 smart00109 C1 Protein kinase C 98.5 6.6E-08 1.4E-12 75.0 2.3 48 80-140 1-49 (49)
33 cd00029 C1 Protein kinase C co 98.4 1.6E-07 3.5E-12 73.4 2.8 49 153-210 1-49 (50)
34 PRK02645 ppnK inorganic polyph 98.4 2.6E-05 5.6E-10 84.4 20.2 255 363-688 3-276 (305)
35 smart00109 C1 Protein kinase C 98.3 5.2E-07 1.1E-11 70.0 2.6 48 153-210 1-48 (49)
36 PRK03378 ppnK inorganic polyph 98.2 6.4E-05 1.4E-09 80.8 18.1 242 363-689 5-273 (292)
37 PRK14075 pnk inorganic polypho 98.1 0.00028 6.2E-09 74.5 20.5 233 365-690 2-238 (256)
38 PRK01231 ppnK inorganic polyph 98.0 0.0002 4.3E-09 77.1 16.2 251 363-688 4-272 (295)
39 PRK02155 ppnK NAD(+)/NADH kina 97.7 0.0027 5.7E-08 68.4 19.4 252 363-689 5-272 (291)
40 PRK14077 pnk inorganic polypho 97.7 0.0031 6.7E-08 67.7 19.5 248 363-687 10-269 (287)
41 KOG0695 Serine/threonine prote 97.5 9.8E-06 2.1E-10 86.0 -2.0 56 74-142 125-182 (593)
42 KOG4236 Serine/threonine prote 97.5 2.4E-05 5.2E-10 87.3 -0.3 68 56-145 253-322 (888)
43 PRK03372 ppnK inorganic polyph 97.5 0.0046 1E-07 67.0 17.1 253 363-690 5-283 (306)
44 PRK04539 ppnK inorganic polyph 97.4 0.012 2.7E-07 63.4 19.3 250 363-688 5-276 (296)
45 KOG0696 Serine/threonine prote 97.3 4.7E-05 1E-09 83.0 -0.3 56 75-143 106-163 (683)
46 PRK01911 ppnK inorganic polyph 97.3 0.029 6.2E-07 60.5 20.5 249 365-688 2-271 (292)
47 PRK03501 ppnK inorganic polyph 97.3 0.022 4.7E-07 60.5 19.1 240 363-689 2-251 (264)
48 PRK02649 ppnK inorganic polyph 97.1 0.032 6.9E-07 60.5 18.3 105 568-689 166-277 (305)
49 COG3199 Predicted inorganic po 96.9 0.0029 6.4E-08 68.2 8.1 47 407-458 89-138 (355)
50 PF01513 NAD_kinase: ATP-NAD k 96.8 0.006 1.3E-07 65.5 10.0 68 415-497 76-143 (285)
51 PRK04885 ppnK inorganic polyph 96.8 0.071 1.5E-06 56.7 17.4 232 366-689 3-248 (265)
52 PLN02727 NAD kinase 96.6 0.12 2.5E-06 62.7 19.4 105 568-689 848-961 (986)
53 PRK14076 pnk inorganic polypho 96.6 0.09 2E-06 62.0 18.2 248 363-686 290-553 (569)
54 PLN02935 Bifunctional NADH kin 96.5 0.12 2.5E-06 59.3 17.9 106 567-689 364-478 (508)
55 PRK01185 ppnK inorganic polyph 96.4 0.16 3.5E-06 54.2 17.2 242 365-689 2-254 (271)
56 KOG1011 Neurotransmitter relea 96.2 0.00094 2E-08 75.8 -1.0 52 77-141 170-223 (1283)
57 PRK00561 ppnK inorganic polyph 96.1 0.37 8E-06 51.1 18.0 99 568-684 122-237 (259)
58 PRK02231 ppnK inorganic polyph 94.8 0.78 1.7E-05 49.1 15.1 105 568-688 141-253 (272)
59 KOG0193 Serine/threonine prote 94.7 0.0096 2.1E-07 68.4 0.5 80 48-141 144-226 (678)
60 KOG4239 Ras GTPase effector RA 94.6 0.0048 1E-07 65.2 -2.2 67 64-143 36-104 (348)
61 PRK04761 ppnK inorganic polyph 94.3 2.2 4.7E-05 45.0 16.8 34 416-453 26-59 (246)
62 KOG1170 Diacylglycerol kinase 94.1 0.023 4.9E-07 66.7 1.6 83 50-142 78-160 (1099)
63 KOG0695 Serine/threonine prote 93.9 0.021 4.5E-07 61.4 0.7 42 166-210 138-179 (593)
64 KOG2996 Rho guanine nucleotide 93.8 0.016 3.4E-07 65.7 -0.3 76 50-140 495-572 (865)
65 KOG0694 Serine/threonine prote 93.4 0.028 6E-07 65.6 0.7 50 165-221 165-214 (694)
66 KOG1011 Neurotransmitter relea 93.0 0.018 4E-07 65.7 -1.5 52 150-210 170-221 (1283)
67 KOG0957 PHD finger protein [Ge 92.6 0.05 1.1E-06 60.8 1.2 35 93-136 120-154 (707)
68 COG0061 nadF NAD kinase [Coenz 91.9 7.4 0.00016 41.8 16.7 107 569-691 152-266 (281)
69 PF03107 C1_2: C1 domain; Int 91.0 0.11 2.5E-06 36.4 1.2 29 94-133 2-30 (30)
70 PLN02929 NADH kinase 90.4 6.7 0.00015 42.6 14.6 63 416-487 65-138 (301)
71 PF07649 C1_3: C1-like domain; 88.6 0.11 2.3E-06 36.4 -0.5 29 94-133 2-30 (30)
72 PF07649 C1_3: C1-like domain; 86.0 0.39 8.5E-06 33.6 1.2 29 171-204 2-30 (30)
73 PF03107 C1_2: C1 domain; Int 84.3 0.67 1.5E-05 32.5 1.7 29 171-204 2-30 (30)
74 KOG3564 GTPase-activating prot 82.7 0.36 7.9E-06 54.1 -0.3 53 78-143 285-338 (604)
75 PF10254 Pacs-1: PACS-1 cytoso 81.5 4.5 9.7E-05 45.6 7.7 46 416-462 76-127 (414)
76 PF01102 Glycophorin_A: Glycop 80.4 2.4 5.1E-05 39.9 4.3 33 22-54 62-94 (122)
77 KOG1244 Predicted transcriptio 76.7 1 2.2E-05 47.2 0.7 88 91-205 222-312 (336)
78 KOG0193 Serine/threonine prote 75.9 1.6 3.5E-05 50.9 2.1 41 166-216 186-226 (678)
79 KOG2996 Rho guanine nucleotide 73.1 1.4 3E-05 50.7 0.7 42 165-209 530-571 (865)
80 KOG0954 PHD finger protein [Ge 72.1 0.83 1.8E-05 53.8 -1.3 134 50-206 234-412 (893)
81 PF14446 Prok-RING_1: Prokaryo 71.7 3.1 6.7E-05 33.4 2.2 36 169-208 5-40 (54)
82 cd08180 PDD 1,3-propanediol de 69.4 20 0.00044 39.2 8.9 90 364-458 23-126 (332)
83 cd08181 PPD-like 1,3-propanedi 66.6 23 0.0005 39.2 8.6 93 364-460 26-143 (357)
84 cd08197 DOIS 2-deoxy-scyllo-in 64.5 25 0.00055 39.1 8.4 87 364-456 24-125 (355)
85 KOG3564 GTPase-activating prot 64.5 2.2 4.7E-05 48.2 -0.0 49 151-209 284-333 (604)
86 cd07766 DHQ_Fe-ADH Dehydroquin 63.0 32 0.0007 37.5 8.8 87 364-456 24-117 (332)
87 PF13831 PHD_2: PHD-finger; PD 61.7 1.7 3.6E-05 32.0 -1.1 20 117-136 3-22 (36)
88 KOG4239 Ras GTPase effector RA 60.7 1.3 2.7E-05 47.5 -2.6 42 166-210 59-100 (348)
89 PF00628 PHD: PHD-finger; Int 59.5 5.1 0.00011 31.1 1.3 33 94-137 1-33 (51)
90 cd08186 Fe-ADH8 Iron-containin 59.1 29 0.00062 38.9 7.7 95 364-461 27-147 (383)
91 cd08185 Fe-ADH1 Iron-containin 58.8 42 0.00092 37.5 9.0 94 364-460 26-149 (380)
92 cd08176 LPO Lactadehyde:propan 58.7 33 0.00072 38.3 8.1 94 364-461 29-147 (377)
93 cd08172 GlyDH-like1 Glycerol d 58.4 49 0.0011 36.5 9.3 88 364-459 24-118 (347)
94 PF00731 AIRC: AIR carboxylase 56.7 26 0.00055 34.3 5.8 74 375-454 8-89 (150)
95 cd08171 GlyDH-like2 Glycerol d 55.6 32 0.00069 38.0 7.2 80 364-451 23-110 (345)
96 cd08169 DHQ-like Dehydroquinat 55.3 46 0.001 36.8 8.4 88 364-457 24-125 (344)
97 KOG2807 RNA polymerase II tran 55.2 8.6 0.00019 41.6 2.5 77 119-206 277-362 (378)
98 PF12273 RCR: Chitin synthesis 54.4 9.7 0.00021 36.0 2.5 10 75-84 32-41 (130)
99 TIGR03405 Phn_Fe-ADH phosphona 54.3 75 0.0016 35.2 9.9 93 364-460 24-145 (355)
100 cd08551 Fe-ADH iron-containing 52.5 53 0.0011 36.5 8.4 91 364-459 24-140 (370)
101 PRK10624 L-1,2-propanediol oxi 52.5 60 0.0013 36.4 8.8 93 363-460 30-150 (382)
102 cd08179 NADPH_BDH NADPH-depend 52.2 44 0.00096 37.3 7.7 91 364-458 24-143 (375)
103 cd08174 G1PDH-like Glycerol-1- 51.8 68 0.0015 35.1 9.0 83 364-455 26-111 (331)
104 PF00628 PHD: PHD-finger; Int 51.6 12 0.00026 29.0 2.2 31 171-206 1-31 (51)
105 cd08173 Gro1PDH Sn-glycerol-1- 51.5 51 0.0011 36.3 8.0 84 364-456 26-115 (339)
106 KOG0955 PHD finger protein BR1 51.5 6.9 0.00015 49.0 1.2 35 91-134 218-252 (1051)
107 KOG1453 Chimaerin and related 51.4 6.8 0.00015 49.0 1.2 42 91-144 555-596 (918)
108 PTZ00286 6-phospho-1-fructokin 48.9 50 0.0011 38.2 7.5 52 405-458 166-220 (459)
109 KOG0956 PHD finger protein AF1 48.9 7.3 0.00016 45.9 0.8 35 94-137 7-43 (900)
110 cd08192 Fe-ADH7 Iron-containin 48.7 63 0.0014 35.9 8.2 68 364-435 25-100 (370)
111 KOG4323 Polycomb-like PHD Zn-f 48.6 6.2 0.00014 45.0 0.2 61 82-175 161-221 (464)
112 cd08182 HEPD Hydroxyethylphosp 48.4 68 0.0015 35.6 8.4 50 407-457 69-139 (367)
113 COG4306 Uncharacterized protei 48.2 8.8 0.00019 35.9 1.1 24 156-179 55-78 (160)
114 COG1979 Uncharacterized oxidor 47.9 67 0.0014 35.4 7.7 62 359-424 26-94 (384)
115 PRK15138 aldehyde reductase; P 46.9 81 0.0018 35.5 8.8 94 364-460 30-149 (387)
116 PRK00002 aroB 3-dehydroquinate 46.9 49 0.0011 36.7 7.0 88 363-456 31-133 (358)
117 PF10367 Vps39_2: Vacuolar sor 46.0 14 0.0003 33.1 2.0 33 167-205 76-108 (109)
118 cd08189 Fe-ADH5 Iron-containin 44.9 77 0.0017 35.4 8.2 92 364-459 27-144 (374)
119 PLN00180 NDF6 (NDH-dependent f 44.8 4.9 0.00011 38.8 -1.1 17 421-437 130-146 (180)
120 KOG0954 PHD finger protein [Ge 44.8 18 0.00038 43.3 3.1 71 166-248 268-342 (893)
121 cd08550 GlyDH-like Glycerol_de 44.8 40 0.00087 37.2 5.8 87 364-458 23-118 (349)
122 PRK11572 copper homeostasis pr 43.8 47 0.001 35.2 5.8 71 383-454 106-179 (248)
123 PF14446 Prok-RING_1: Prokaryo 43.7 12 0.00025 30.2 1.0 35 92-136 5-39 (54)
124 TIGR01357 aroB 3-dehydroquinat 43.7 84 0.0018 34.6 8.2 82 364-451 21-115 (344)
125 PF07015 VirC1: VirC1 protein; 42.6 1.9E+02 0.0041 30.4 9.9 94 364-460 1-101 (231)
126 PRK00843 egsA NAD(P)-dependent 42.3 82 0.0018 34.9 7.8 87 364-456 35-124 (350)
127 KOG0955 PHD finger protein BR1 41.8 14 0.00031 46.3 1.9 54 166-222 216-273 (1051)
128 cd08194 Fe-ADH6 Iron-containin 41.8 80 0.0017 35.3 7.7 90 364-457 24-138 (375)
129 cd08184 Fe-ADH3 Iron-containin 41.4 1.2E+02 0.0026 33.7 8.9 92 364-460 26-142 (347)
130 PF10367 Vps39_2: Vacuolar sor 41.3 98 0.0021 27.4 6.9 31 93-135 79-109 (109)
131 KOG4180 Predicted kinase [Gene 41.0 14 0.0003 40.2 1.4 60 416-487 106-167 (395)
132 cd08187 BDH Butanol dehydrogen 40.2 77 0.0017 35.5 7.3 94 364-460 29-147 (382)
133 PF08746 zf-RING-like: RING-li 40.1 17 0.00037 27.7 1.4 31 172-209 1-33 (43)
134 PLN02564 6-phosphofructokinase 39.6 63 0.0014 37.5 6.4 53 404-458 165-220 (484)
135 PF08746 zf-RING-like: RING-li 39.5 10 0.00022 28.9 0.1 29 95-136 1-31 (43)
136 cd08195 DHQS Dehydroquinate sy 38.2 72 0.0016 35.2 6.5 82 364-451 25-119 (345)
137 smart00249 PHD PHD zinc finger 37.9 23 0.0005 26.0 1.9 31 171-206 1-31 (47)
138 PF13831 PHD_2: PHD-finger; PD 37.6 15 0.00033 26.9 0.8 19 189-207 4-22 (36)
139 TIGR02483 PFK_mixed phosphofru 37.5 97 0.0021 34.1 7.3 50 404-458 83-132 (324)
140 smart00249 PHD PHD zinc finger 37.5 20 0.00043 26.4 1.4 32 94-136 1-32 (47)
141 PF07227 DUF1423: Protein of u 37.1 24 0.00051 40.1 2.5 49 91-143 122-171 (446)
142 PRK09423 gldA glycerol dehydro 36.1 1.2E+02 0.0025 33.8 7.8 80 364-451 30-116 (366)
143 cd08183 Fe-ADH2 Iron-containin 36.1 1.4E+02 0.0031 33.2 8.6 87 364-459 23-139 (374)
144 PRK06830 diphosphate--fructose 35.2 80 0.0017 36.3 6.4 52 405-458 162-216 (443)
145 KOG4628 Predicted E3 ubiquitin 35.0 57 0.0012 36.2 4.9 32 93-135 230-261 (348)
146 cd08188 Fe-ADH4 Iron-containin 34.7 1.9E+02 0.0041 32.3 9.3 52 407-459 77-145 (377)
147 cd08178 AAD_C C-terminal alcoh 34.5 1.5E+02 0.0032 33.5 8.4 29 406-435 69-97 (398)
148 cd08549 G1PDH_related Glycerol 34.4 1.1E+02 0.0025 33.5 7.3 80 364-452 25-113 (332)
149 COG5151 SSL1 RNA polymerase II 33.8 19 0.0004 38.8 1.0 83 119-206 309-405 (421)
150 TIGR02638 lactal_redase lactal 33.2 1.5E+02 0.0033 33.1 8.2 94 363-460 29-149 (379)
151 PF03932 CutC: CutC family; I 33.0 16 0.00035 37.4 0.3 53 400-452 125-177 (201)
152 cd00763 Bacterial_PFK Phosphof 32.7 1.6E+02 0.0034 32.4 7.9 51 404-459 81-131 (317)
153 KOG0782 Predicted diacylglycer 32.1 12 0.00027 43.1 -0.7 52 151-209 168-219 (1004)
154 PF12219 End_tail_spike: Catal 31.7 24 0.00052 33.6 1.2 14 416-429 85-98 (160)
155 cd08191 HHD 6-hydroxyhexanoate 31.5 2.1E+02 0.0045 32.1 9.0 93 364-460 23-140 (386)
156 cd00363 PFK Phosphofructokinas 31.1 1.4E+02 0.0031 32.9 7.4 52 405-458 82-136 (338)
157 cd02340 ZZ_NBR1_like Zinc fing 30.8 38 0.00082 25.8 2.0 30 171-206 2-32 (43)
158 KOG2178 Predicted sugar kinase 30.8 23 0.0005 39.6 1.1 57 416-487 169-225 (409)
159 cd08177 MAR Maleylacetate redu 29.8 93 0.002 34.2 5.7 84 364-455 24-114 (337)
160 cd08170 GlyDH Glycerol dehydro 28.6 82 0.0018 34.7 5.0 88 364-459 23-119 (351)
161 TIGR02482 PFKA_ATP 6-phosphofr 28.3 1.1E+02 0.0023 33.4 5.7 51 405-459 81-131 (301)
162 PF13901 DUF4206: Domain of un 27.9 45 0.00096 34.1 2.6 41 91-141 151-193 (202)
163 PF13685 Fe-ADH_2: Iron-contai 27.2 1.3E+02 0.0028 31.9 5.9 85 364-456 20-112 (250)
164 PF08308 PEGA: PEGA domain; I 27.1 87 0.0019 25.8 3.8 40 651-690 3-44 (71)
165 PF13824 zf-Mss51: Zinc-finger 27.1 43 0.00093 27.1 1.8 29 94-135 1-29 (55)
166 PLN02834 3-dehydroquinate synt 26.3 2.3E+02 0.0049 32.6 8.1 83 364-452 101-198 (433)
167 KOG4718 Non-SMC (structural ma 25.5 18 0.00039 37.0 -0.8 30 93-135 182-211 (235)
168 PLN02884 6-phosphofructokinase 25.5 1.4E+02 0.0031 33.9 6.2 52 404-458 132-187 (411)
169 PRK13305 sgbH 3-keto-L-gulonat 25.4 3E+02 0.0064 28.6 8.1 71 379-449 43-117 (218)
170 smart00661 RPOL9 RNA polymeras 24.9 53 0.0011 25.4 1.9 29 94-128 2-30 (52)
171 PRK14071 6-phosphofructokinase 24.8 1.2E+02 0.0027 33.8 5.5 52 404-459 96-147 (360)
172 cd08199 EEVS 2-epi-5-epi-valio 24.7 2.8E+02 0.0061 30.8 8.3 82 364-451 27-122 (354)
173 KOG1044 Actin-binding LIM Zn-f 23.7 26 0.00056 40.9 -0.1 94 91-206 132-249 (670)
174 COG0353 RecR Recombinational D 23.3 82 0.0018 32.1 3.3 40 41-103 26-65 (198)
175 PF11682 DUF3279: Protein of u 23.1 50 0.0011 31.4 1.7 26 188-220 96-121 (128)
176 PRK03202 6-phosphofructokinase 22.5 1.5E+02 0.0032 32.7 5.5 50 405-459 83-132 (320)
177 PF00465 Fe-ADH: Iron-containi 22.5 2E+02 0.0042 31.9 6.6 91 365-459 23-139 (366)
178 PF01363 FYVE: FYVE zinc finge 22.2 37 0.00081 28.0 0.6 36 168-207 8-43 (69)
179 PRK14072 6-phosphofructokinase 21.6 1.4E+02 0.0029 34.2 5.1 55 404-459 92-148 (416)
180 PF15050 SCIMP: SCIMP protein 21.6 1E+02 0.0022 28.9 3.3 36 23-58 6-41 (133)
181 TIGR01053 LSD1 zinc finger dom 21.6 66 0.0014 22.9 1.7 27 171-199 3-29 (31)
182 cd08198 DHQS-like2 Dehydroquin 21.2 3.1E+02 0.0067 30.8 7.8 87 363-452 30-134 (369)
183 TIGR03142 cytochro_ccmI cytoch 20.8 1E+02 0.0022 28.6 3.3 27 705-731 47-73 (117)
184 PRK09860 putative alcohol dehy 20.8 1.2E+02 0.0026 34.1 4.5 56 406-462 79-151 (383)
185 PRK06203 aroB 3-dehydroquinate 20.7 3.7E+02 0.008 30.4 8.3 90 364-456 43-152 (389)
186 KOG3362 Predicted BBOX Zn-fing 20.6 40 0.00086 32.5 0.5 22 91-127 117-138 (156)
187 PRK00536 speE spermidine synth 20.5 65 0.0014 34.4 2.1 18 416-433 74-92 (262)
188 PF13240 zinc_ribbon_2: zinc-r 20.2 64 0.0014 21.3 1.3 22 94-127 1-22 (23)
189 KOG4443 Putative transcription 20.2 48 0.0011 39.3 1.2 18 118-135 35-52 (694)
190 PRK06756 flavodoxin; Provision 20.1 3.2E+02 0.0069 25.8 6.7 27 364-392 2-28 (148)
No 1
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-100 Score=819.08 Aligned_cols=504 Identities=34% Similarity=0.612 Sum_probs=433.3
Q ss_pred CCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh---cCCCccceecC-----
Q 004734 76 PLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA---HKDCKCVSMIG----- 147 (732)
Q Consensus 76 ~~~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~---~~~Ck~~~~~~----- 147 (732)
..++|.|..++.++ .+|.|=++-..- .+.+++.+.+|.+|+++||..|.... ...||.+....
T Consensus 166 ~~gEHvWletnvsg---d~CYvGE~~C~~------r~~kS~~rRkCAaCkIVvHT~CieqLeKiNfrCKptFRe~gsr~~ 236 (1004)
T KOG0782|consen 166 GDGEHVWLETNVSG---DECYVGEKDCRV------RFAKSGERRKCAACKIVVHTNCIEQLEKINFRCKPTFREYGSRKT 236 (1004)
T ss_pred CCceeEEEecccCC---ceeeechHHHHH------HHhhhhhhccceeeeEEEechHHHHHHHhccccccchhhccccCc
Confidence 36899999998864 599885543320 11234456799999999999999765 56899986421
Q ss_pred --ccceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCC---ceEecccccccchhhhccCCCCCCCCCCCCCCCC
Q 004734 148 --FEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSP---IWCCLWCQRLVHVDCHNNMSNETGDICDLGPFRR 222 (732)
Q Consensus 148 --~~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~---~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r~ 222 (732)
...+.|||+|+| ...++|.+|+|.+.+.|.+.+. +..|+||+..+|.+-.++|...+++.|.+|.|+.
T Consensus 237 rE~~fvrHHWVHrr-------RqeGkC~~CgKgFQQKf~FhsKEivAisCSWCKqayH~KvtCFml~~iEEpCslGahaa 309 (1004)
T KOG0782|consen 237 RESGFVRHHWVHRR-------RQEGKCNTCGKGFQQKFFFHSKEIVAISCSWCKQAYHLKVTCFMLDKIEEPCSLGAHAA 309 (1004)
T ss_pred ccccchHHhHhhHh-------hhccccchhhhhhhhheeeccccEEEEEehHHHHHhhcchhhhhhhhhhccccccccce
Confidence 235899999987 4578999999999988766544 6899999999999998999998999999999999
Q ss_pred eeeCCCceeeccccccCCccccccccchhhhhhhHHhHhhccccccCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 004734 223 LILSPLYVKELNHTLAGGILSSITHGANEIASQVRASIRSQSKKYKHGNEPSVDPVDSGSTGDTSSESMADAHKTVHSSN 302 (732)
Q Consensus 223 ~IlpP~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (732)
+|+||+||..+.+.+ . ++.++ ||
T Consensus 310 vivPPTWIlr~~~pq--n--------------slkas-----kk------------------------------------ 332 (1004)
T KOG0782|consen 310 VIVPPTWILRLANPQ--N--------------SLKAS-----KK------------------------------------ 332 (1004)
T ss_pred eecCchHheeecCcc--c--------------hhhhh-----hh------------------------------------
Confidence 999999997664311 0 01111 11
Q ss_pred ccccccCCCCCCCCCCCccccccccccCcccccCCCCCcchhhHHHhhhccceeccCCC-CCCcEEEEEcCCCCCCChhh
Q 004734 303 RVEENCNGGTNVGDHYQDGELDKKIESKPSFKRSGSINQKDESQILQLKQKYELIDMPP-DARPLLVFINKKSGAQRGDS 381 (732)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~pllV~vNPkSG~~~g~~ 381 (732)
++..+|+|+++++..++ +.+++|.|.|+++ .|+|+||||||||||++|.+
T Consensus 333 -------------------------kkRtsfkRKasKkg~ee----~k~rpFvikPtsSplmkPLLVFVNPKSGGNqGsK 383 (1004)
T KOG0782|consen 333 -------------------------KKRTSFKRKASKKGHEE----NKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQGSK 383 (1004)
T ss_pred -------------------------cccCchhhhhhhccchh----ccCCceEEccCCCCCCCceEEEecCCCCCcchHH
Confidence 12234667777666543 4578898888886 59999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhh
Q 004734 382 LRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVL 461 (732)
Q Consensus 382 ~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~L 461 (732)
+++.|-+||||+|||||+. .||..|++++|++.+.||++|||||||+|||+.|+..++.+.||||||||||||||||+|
T Consensus 384 ~lq~f~WyLNPRQVFDlsq-~GPK~aLEmyRKV~nLRILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtl 462 (1004)
T KOG0782|consen 384 ALQTFCWYLNPRQVFDLSQ-LGPKFALEMYRKVVNLRILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTL 462 (1004)
T ss_pred HHHHHHHhcChhhheehhc-cCcHHHHHHHHhccceEEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhc
Confidence 9999999999999999986 799999999999999999999999999999999999999899999999999999999999
Q ss_pred cCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccC---------Ccc-cCCCceeeeeeccchhHHHHHHHHhh
Q 004734 462 FWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQ---------GKL-LEPPKFLNNYLGVGCDAKVALDIHNL 531 (732)
Q Consensus 462 gwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~---------g~~-~~~~~~f~NyfsIG~DA~V~~~fh~~ 531 (732)
+||+||++ +++.+||..++++.++.||||++++.++. |.. ..+..+|+||||+||||.|+++||+.
T Consensus 463 nWGGgytD----EPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~LPL~VfnNYFSlGfDAHVtLeFHeS 538 (1004)
T KOG0782|consen 463 NWGGGYTD----EPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSALPLTVFNNYFSLGFDAHVTLEFHES 538 (1004)
T ss_pred ccCCCcCc----chHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhccchhHhhccccccccceEEEEeccc
Confidence 99999985 67999999999999999999999998762 221 23557999999999999999999999
Q ss_pred hhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecC----CeeEEEEeccCcccCCcccCCCCCC
Q 004734 532 REENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPE----DAEGVLVANIGSYMGGVDLWQNEDE 607 (732)
Q Consensus 532 Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~----~~~~l~v~Nip~~gGG~~l~~~a~~ 607 (732)
||+||++|||||.|||+|+..|+.++++++.+++.+.|+|+|||.+++ |. .++.|+++|||+|.+|..+|++..+
T Consensus 539 ReANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCDG~DlT-PkIqeLK~qCivFlNIprYcaGTmPWG~pgd 617 (1004)
T KOG0782|consen 539 REANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCDGVDLT-PKIQELKLQCIVFLNIPRYCAGTMPWGEPGD 617 (1004)
T ss_pred cccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEecCccCC-hhhhhcccceEEEecchhhhcCccCCCCCCc
Confidence 999999999999999999999999999999999999999999998876 32 5789999999999999999998754
Q ss_pred CCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeCCCccEEEcCCCCCCCceEEEEEecceeEEE
Q 004734 608 NYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLFAPLPVQIDGEPWFQQPCTLAISHHGQAFML 687 (732)
Q Consensus 608 ~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~~~P~~I~I~~~~~~~ml 687 (732)
+ ..|.+|..+||.+||+||+.. .++.+|+|. .+.|++||++|++.+.+.+||||||||+...|..|+|..++++.|+
T Consensus 618 h-hDfePqrhdDGyvEViGFTma-sLAALQvGG-hGERl~QCreV~l~T~KaIPmQVDGEPC~LAps~Iri~lrnqa~Mv 694 (1004)
T KOG0782|consen 618 H-HDFEPQRHDDGYVEVIGFTMA-SLAALQVGG-HGERLAQCREVRLITNKAIPMQVDGEPCLLAPSIIRIGLRNQAPMV 694 (1004)
T ss_pred c-ccCCccccCCceEEEEeeeHH-HHHHHhhcC-cchhhhhceeEEEEeccccceeecCcchhcchhheEEeecccchHH
Confidence 4 368999999999999999954 578899975 7889999999999999999999999999999999999999999999
Q ss_pred ecC
Q 004734 688 KRA 690 (732)
Q Consensus 688 ~~~ 690 (732)
.+.
T Consensus 695 qk~ 697 (1004)
T KOG0782|consen 695 QKE 697 (1004)
T ss_pred HHH
Confidence 764
No 2
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-99 Score=843.45 Aligned_cols=603 Identities=36% Similarity=0.585 Sum_probs=468.9
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCccc
Q 004734 41 LTIAYTAFQWRRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHR 120 (732)
Q Consensus 41 ~~~~~~~~~~~r~~~~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~ 120 (732)
..++|..++|.|...+.|-.++++.++.. ..|.|...... +-.+|+||+.... .+.+.
T Consensus 3 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 60 (634)
T KOG1169|consen 3 EVIYLKDIVCYRSLLETGTPVAKLEFKFP--------ILHSSEPDCII--RQMVCCVCLWSEM------------APSVD 60 (634)
T ss_pred ceEeechhhhhhhhhccCchhhhhhhccc--------cCcccCCchhH--hhhhhhhhhhccc------------ccccc
Confidence 45778889999999999999998877765 47999998775 3349999998332 23469
Q ss_pred ccccccccCccchhhhcCCCccceecCccceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccc
Q 004734 121 CSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVH 200 (732)
Q Consensus 121 C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH 200 (732)
|++|+.++|..|...+.++|++....+..+..|+|.+.|+...+++..+++|.+|.+.|++.+...++|++|.||+++||
T Consensus 61 ~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh 140 (634)
T KOG1169|consen 61 CDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVH 140 (634)
T ss_pred eeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHH
Confidence 99999999999999999999998877777777888777777778999999999999999887765567999999999999
Q ss_pred hhhhccCCCCCCCCCCCCCCCCeeeCCCceeeccccccCCccccccccchhhh--hhhHHhHhhccccccCCCCCCCCCC
Q 004734 201 VDCHNNMSNETGDICDLGPFRRLILSPLYVKELNHTLAGGILSSITHGANEIA--SQVRASIRSQSKKYKHGNEPSVDPV 278 (732)
Q Consensus 201 ~~C~~~~~~~~~~~CdlG~~r~~IlpP~~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~ 278 (732)
+.|+..+.++....||+|.+|..+++|.|++....+...+....+....+.+. ......+|-..+.++..++....+.
T Consensus 141 ~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~h~~~~~~~~~~~~~~~ 220 (634)
T KOG1169|consen 141 ERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVKADQGLTGPRCGWCQIRVHDKCKSELSQECDLGE 220 (634)
T ss_pred HHHHhhcCcccccccccccccceeecCcccccccCCccchhhhccccccccccccccceeeeeeecchHHHHhhhccChh
Confidence 99999999999999999999999999999875442222233333322211111 0011111111100111111111111
Q ss_pred CCCCCCCCCcccccccccccccccccccccCCCCCCCCCCCccccccccccCcccccCCCCCcchhhHHHhhhccceecc
Q 004734 279 DSGSTGDTSSESMADAHKTVHSSNRVEENCNGGTNVGDHYQDGELDKKIESKPSFKRSGSINQKDESQILQLKQKYELID 358 (732)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (732)
-++.....++-....+ ++ . ...+....+.+.++. +......+.+.+
T Consensus 221 ~~~~i~p~~~~~~~~~--------~~-------~----------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 266 (634)
T KOG1169|consen 221 LKDHILPPSTLRPART--------AR-------V----------------ASDHSGLPGEKSEEV---TDAKKMQQLLVT 266 (634)
T ss_pred hhhccCCceeeecccc--------cc-------c----------------ccccccccccccccc---cccccccccccC
Confidence 1111100000000000 00 0 000000000000000 000012245667
Q ss_pred CCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhc
Q 004734 359 MPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 359 ~p~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
.|++++|++||||||||+++|+.++++|+++|||.|||||...++|..++.++++++.+||+||||||||+|||+.+++.
T Consensus 267 ~~~~~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QVfdl~~~~~p~~gL~l~~~~~~~riLVcGGDGTvGWVL~~i~~~ 346 (634)
T KOG1169|consen 267 DPPDWRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQVFDLLKRGGPRPGLTLFRDVPDFRILVCGGDGTVGWVLGCIDKL 346 (634)
T ss_pred CCCCCcceEEEEecCCcccccHHHHHHHHHhcChhhEEecccCCCCchhHHHHHhCCcceEEEecCCCcchhhhhhHHHh
Confidence 88899999999999999999999999999999999999999866799999999999999999999999999999999997
Q ss_pred CCC---CCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcc----------
Q 004734 439 NFV---SPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKL---------- 505 (732)
Q Consensus 439 ~~~---~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~---------- 505 (732)
+.. ..||||||||||||||||+|+||+||++.+.. +.++|++|++|.++.||||+|.+...++..
T Consensus 347 n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~--~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~ 424 (634)
T KOG1169|consen 347 NKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRN--LIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEK 424 (634)
T ss_pred hccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhh--HHHHHHhhhhccceecceeeEEeeccccccccccccCCCc
Confidence 543 48999999999999999999999999875542 899999999999999999999987653221
Q ss_pred --cCCCceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcC--CCcEEEEEECCEEEEec
Q 004734 506 --LEPPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFED--FPWQVRVVVDGTEIEVP 581 (732)
Q Consensus 506 --~~~~~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~--l~~~v~v~~DG~~i~lp 581 (732)
..+..+|+||||||+||.|+++||.+||++|++|+||++||++|+.+|+++.|...|++ ++.+++++.|++++.+|
T Consensus 425 ~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i~i~~~~d~~dl~~p 504 (634)
T KOG1169|consen 425 GDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHIKIELDGDGEDLELP 504 (634)
T ss_pred CCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccceEEEEcccceEccCC
Confidence 13456899999999999999999999999999999999999999999988888888887 66666666788888888
Q ss_pred CCeeEEEEeccCcccCCcccCCCCCCCCCCCCCccc---CCCeEEEEEEcCcccchhhhhccCCceEEeE----eeEEEE
Q 004734 582 EDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSM---HDKVLEVVSISGTWHLGKLQVGLSRARRLAQ----GQSIRI 654 (732)
Q Consensus 582 ~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~---~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q----~~~I~I 654 (732)
.++++|+|+||||||||.++|++.++.+..|..+.+ +||++||+++++.+|++++++|+..++|++| +.+++|
T Consensus 505 ~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvgv~~~~h~~~~qvgL~~a~rigQ~~a~~~~~~i 584 (634)
T KOG1169|consen 505 KSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVGVQDSWHLLQEQVGLESALRIGQRLAQCSERVI 584 (634)
T ss_pred CCceeEEEEcccccccCcccccccCccccccccccccCCCcCeEEEEEeccchhhhhhhhccchhhHHHHHhhccEEEEe
Confidence 789999999999999999999998777766654444 4599999999999999999999999998885 455668
Q ss_pred EeCCCccEEEcCCCCCCCceEEEEEecceeEEEecCCCCcchhhHHH
Q 004734 655 QLFAPLPVQIDGEPWFQQPCTLAISHHGQAFMLKRAAEEPLGHAAAI 701 (732)
Q Consensus 655 ~~~~~~pvqiDGE~~~~~P~~I~I~~~~~~~ml~~~~~~~~~~~~~~ 701 (732)
.+.+++|||||||||+|+|++|+|+|++|+.|+.++.+++++++...
T Consensus 585 ~~~k~~PMQiDGEPW~Q~p~tI~Ithk~q~~mL~~~~~~~~~~~~~~ 631 (634)
T KOG1169|consen 585 GTKKTFPMQIDGEPWMQPPCTIEITHKNQAPMLMKAAKEKRRRFGNT 631 (634)
T ss_pred ccccCcceecCCccccCCCceEEEEecchHhhhhcccccccCccccc
Confidence 99999999999999999999999999999999999998888776654
No 3
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=5e-77 Score=660.39 Aligned_cols=493 Identities=36% Similarity=0.636 Sum_probs=406.6
Q ss_pred HHHhhhhHHHHHHHHhhccCCcccCcc-CCCCCeeEeeeeC--CCCCccccccCCCCCCCCCCCCcccCCcCcccccccc
Q 004734 49 QWRRNINLGWMKAIARSKKNPKTRHKV-PLAPHTWVLESVS--RGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICG 125 (732)
Q Consensus 49 ~~~r~~~~~w~~~~~r~k~~~~~~~~~-~~~~H~w~~~~~~--~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~ 125 (732)
..+-|+.+.|...+-+.|.+....... ..+.|-+...-.+ ..-.+.|++|.. .|.+|.
T Consensus 9 ~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g~~~~~~d~t~a~~~eSs~~n~~~s-------------------f~vi~~ 69 (1099)
T KOG1170|consen 9 NDVDNEREAWKQSILRAKDRMPEKVAKTASGPLFALLDLTSAHVAESSTNNPRPS-------------------FCVITP 69 (1099)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHhcccccccccccCCCCCC-------------------eeEecc
Confidence 345567788887777777554222111 1222322221111 112245666653 556788
Q ss_pred cccCccchhhhcCCCccceecC-----------ccceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecc
Q 004734 126 AAAHLSCSLSAHKDCKCVSMIG-----------FEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLW 194 (732)
Q Consensus 126 ~~vH~~C~~~~~~~Ck~~~~~~-----------~~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~W 194 (732)
...|..|++.-...|++..... ...|+|+|+|+ |++.+++|.+|+++|++... +++|+|.|
T Consensus 70 ~rk~r~~adn~ke~e~wi~~~kt~q~~e~~s~~~a~mphqw~Eg------nlpvsskc~vc~k~cgs~~r--lqd~rclw 141 (1099)
T KOG1170|consen 70 VRKHRLCADNRKEMEKWINQSKTPQHLEFISPENAIMPHQWMEG------NLPVSSKCSVCEKPCGSVLR--LQDYRCLW 141 (1099)
T ss_pred cHHhhhhccchhHHHHhhccccchhhccccCCCcccCchhhhhc------CCCccccccccccccccccc--cCCcceEe
Confidence 8899999999888899875321 12699999995 99999999999999998643 47999999
Q ss_pred cccccchhhhccCCCCCCCCCCCCCCCCeeeCCCceeeccccccCCccccccccchhhhhhhHHhHhhccccccCCCCCC
Q 004734 195 CQRLVHVDCHNNMSNETGDICDLGPFRRLILSPLYVKELNHTLAGGILSSITHGANEIASQVRASIRSQSKKYKHGNEPS 274 (732)
Q Consensus 195 C~~~vH~~C~~~~~~~~~~~CdlG~~r~~IlpP~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 274 (732)
|+-.||.+|..++..+ |.||..+-..+||++++++..+ |.+ + .+.
T Consensus 142 c~~~vh~~c~~~~~~~----cs~~~~~~svi~ptal~~~~~d---g~~-------------v---~~~------------ 186 (1099)
T KOG1170|consen 142 CGCCVHDTCIGNLARA----CSLGHSALSVIPPTALKEVTPD---GTA-------------V---FWE------------ 186 (1099)
T ss_pred eccEeehhhhhhHHhh----cccccccccccChhhhcccCCC---cce-------------e---ehh------------
Confidence 9999999999999887 9999999999999998766521 100 0 000
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccccccCCCCCCCCCCCccccccccccCcccccCCCCCcchhhHHHhhhccc
Q 004734 275 VDPVDSGSTGDTSSESMADAHKTVHSSNRVEENCNGGTNVGDHYQDGELDKKIESKPSFKRSGSINQKDESQILQLKQKY 354 (732)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (732)
..|
T Consensus 187 -----------------------------------------------------------------------------~a~ 189 (1099)
T KOG1170|consen 187 -----------------------------------------------------------------------------EAY 189 (1099)
T ss_pred -----------------------------------------------------------------------------hhc
Confidence 001
Q ss_pred eeccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 355 ELIDMPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 355 ~~~~~p~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
.++...|++||+|.|||..+|.+++++|+++|||.|||+|.. ++|.-||.+|..+..+||+||||||+|+||+..
T Consensus 190 ----~~~~~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~-~gp~~gL~~f~~~d~friLvcggdGsv~wvls~ 264 (1099)
T KOG1170|consen 190 ----GGPCGSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIA-GGPDFGLTFFSHFESFRILVCGGDGSVGWVLSA 264 (1099)
T ss_pred ----CCCCCCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHc-cCcchhhhhhhcccceEEEEecCCCCCcchHHH
Confidence 134568999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred HHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccC------------
Q 004734 435 IDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQ------------ 502 (732)
Q Consensus 435 l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~------------ 502 (732)
++..++..++.+||||+|||||+||+||||..+. +...+.+||+..+.|.+.+||||.+......
T Consensus 265 ~ds~~lh~kcql~vlplgtgndlarvlgwg~a~~---ddt~~p~il~~~eRastkmldrwsvm~~e~~~~~~~~~~~~~v 341 (1099)
T KOG1170|consen 265 IDRLNLHSKCQLAVLPLGTGNDLARVLGWGHAFY---DDTLLPQILRTMERASTKMLDRWSVMAIEGPQADAVRRYIEKV 341 (1099)
T ss_pred HHhccchhhcccccccCCChHHHHHHhcccccCc---hhhccHHHHHHHHhhhhhhhhcchhhhhhccccchHHHHHHHH
Confidence 9999999999999999999999999999996543 3355679999999999999999976531000
Q ss_pred --------------------------------------------------------------------------------
Q 004734 503 -------------------------------------------------------------------------------- 502 (732)
Q Consensus 503 -------------------------------------------------------------------------------- 502 (732)
T Consensus 342 ~~~~~~~e~~~i~~~e~q~~t~l~kiL~s~~~t~~i~~~~~~c~~~~~f~~k~~ka~~s~~~nl~~s~a~~~k~spa~e~ 421 (1099)
T KOG1170|consen 342 ETFLEAEETWDIIHAENQLATTLRKILHSVSHTYSILENNTLCTKREDFVKKRSKATPSVLSNLSSSSACSPKCSPAGED 421 (1099)
T ss_pred HHhcccchhhhhhhhhhhhhhhHHhhhccccchhhhhhhccccchHHHHHHHHhhcccchhccCCchhhccccCCccccc
Confidence
Q ss_pred ---------------------------------------C----------------------------------------
Q 004734 503 ---------------------------------------G---------------------------------------- 503 (732)
Q Consensus 503 ---------------------------------------g---------------------------------------- 503 (732)
|
T Consensus 422 ~~~~~~~~~~es~assv~~~~t~~~~~~l~~gt~~~~~~g~t~~p~~~~~~~~~~~i~~~r~eL~~kans~kks~s~~i~ 501 (1099)
T KOG1170|consen 422 LPQLFEILHSESSASSVLTALSARTYDELEIGTVHPPTPGATREPSTAYDDDEENEIVENRKELDQKANSLKKSVSTIID 501 (1099)
T ss_pred hhHHHHHhhhhhhhhhccCCCchhhhhhhhhccccCCCCCccCCCCccccchhhhhhcccHHHHhHHhhhhhccHHHhHH
Confidence 0
Q ss_pred ---------------------------------------cc---------------------------------------
Q 004734 504 ---------------------------------------KL--------------------------------------- 505 (732)
Q Consensus 504 ---------------------------------------~~--------------------------------------- 505 (732)
++
T Consensus 502 ~te~a~De~~~~~~~~L~eseekm~~ks~~~~~~se~d~~~~~~s~~~~~~spl~rl~s~~~ls~ggs~~s~~~~~d~dt 581 (1099)
T KOG1170|consen 502 ITEGAPDEPRIYSDTTLNESEEKMKSKSLHPICSSEDDMKQHSDSSLYADYSPLERLSSGGGLSAGGSTLSPARASDSDT 581 (1099)
T ss_pred HhhcCCCcccccchhhhhhhHhhhhhccCCCcccCccccccccchhhccccchhhccCCCCCcccCccccCcccccccch
Confidence 00
Q ss_pred --------cCC----------C---------ceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHH
Q 004734 506 --------LEP----------P---------KFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIM 558 (732)
Q Consensus 506 --------~~~----------~---------~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~ 558 (732)
..+ . -+||||||||+||+|.++||+.||+||+|++||..|+|||.+.|.++++
T Consensus 582 l~al~~~~~~p~~d~g~seS~L~sa~~y~EkCVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLL 661 (1099)
T KOG1170|consen 582 LSALKERKRTPGSDLGLSESHLRSAGQYKEKCVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELL 661 (1099)
T ss_pred hhhhhccccCCcccccccccccccccchhhhhhhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHH
Confidence 000 0 1699999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhh
Q 004734 559 DRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQV 638 (732)
Q Consensus 559 ~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~ 638 (732)
.++|+++..+|.+||||+++.+| .+++|+|+|||+|+||+++|+.. ..++.|.++++||++||||++.++.+|+.-++
T Consensus 662 hrTyrnLEQRV~LECDG~~i~lP-~LQGIviLNIpSyaGGtNFWGsn-k~dd~f~apSfDDriLEVVAvFGsvqMA~SRv 739 (1099)
T KOG1170|consen 662 HRTYRNLEQRVKLECDGVPIDLP-SLQGIVILNIPSYAGGTNFWGSN-KDDDEFTAPSFDDRILEVVAVFGSVQMATSRV 739 (1099)
T ss_pred HHHHHhHHHHeeeecCCcccCCc-ccceeEEEecccccCcccccCCC-CCCCcccCCCcccceeEEeeeehhHHHHHHHH
Confidence 99999999999999999999998 59999999999999999999986 45789999999999999999999988887665
Q ss_pred ccCCceEEeEeeEEEEEeC--CCccEEEcCCCCCCCceEEEEEecceeEEEecC
Q 004734 639 GLSRARRLAQGQSIRIQLF--APLPVQIDGEPWFQQPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 639 gl~~~vrl~q~~~I~I~~~--~~~pvqiDGE~~~~~P~~I~I~~~~~~~ml~~~ 690 (732)
-..+++|++||++|+|.+. +.+|||+|||+|.|+|..|+|.|++.+.||.+.
T Consensus 740 I~LqhHRIAQCr~V~I~IlGDE~IPVQvDGEaWlQPPG~irIvHKNRaQmL~Rn 793 (1099)
T KOG1170|consen 740 IRLQHHRIAQCRHVRIVILGDEGIPVQVDGEAWLQPPGIIRIVHKNRAQMLARN 793 (1099)
T ss_pred HHhhhhhhhhceEEEEEEecCCCCceeecCccccCCCceeeeehhhhHHHhhcc
Confidence 4457899999999999984 799999999999999999999999999999875
No 4
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.5e-42 Score=365.38 Aligned_cols=274 Identities=21% Similarity=0.243 Sum_probs=225.1
Q ss_pred EEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC--CCCeEEEEcCchhHHHHHHHHHhcCCCCC
Q 004734 367 LVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV--PHFRVLVCGGDGTVGWVLNAIDKQNFVSP 443 (732)
Q Consensus 367 lV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~--~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ 443 (732)
++|+||.||++. +.+.+++.+|..... +.+..|+.++++.+++++. ..+.|+|+||||||++|+|++.. .+
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~----~~ 74 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVE----TG 74 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhc----CC
Confidence 579999999875 467788888865543 5555677888888888764 35789999999999999999975 46
Q ss_pred CcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccchhHH
Q 004734 444 PPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGCDAK 523 (732)
Q Consensus 444 ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG~DA~ 523 (732)
+|+||||+||||||||+||++. ++.+.++.+..+..+.+|.+++ +.+||+|++|+|+||+
T Consensus 75 ~~lgiiP~GT~Ndfar~Lg~~~---------~~~~a~~~i~~~~~~~vD~g~~-----------~~~~f~n~~g~G~da~ 134 (287)
T PRK13057 75 LPLGILPLGTANDLARTLGIPL---------DLEAAARVIATGQVRRIDLGWV-----------NGHYFFNVASLGLSAE 134 (287)
T ss_pred CcEEEECCCCccHHHHHcCCCC---------CHHHHHHHHHcCCeEEeeEEEE-----------CCEEEEEEEecCccHH
Confidence 8999999999999999999863 3667777787777777776554 3479999999999999
Q ss_pred HHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCCcccCC
Q 004734 524 VALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGGVDLWQ 603 (732)
Q Consensus 524 V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~l~~ 603 (732)
|+...+..+ ++.+|+++|+..+++.+++ ..+++++++.||+.+.. +...++|+|.++||||+.++|
T Consensus 135 v~~~~~~~~--------k~~~G~~aY~~~~~~~l~~----~~~~~~~l~~d~~~~~~--~~~~~~v~N~~~~gg~~~~~p 200 (287)
T PRK13057 135 LARRLTKEL--------KRRWGTLGYAIAALRVLRR----SRPFTAEIEHDGRTERV--KTLQVAVGNGRYYGGGMTVAH 200 (287)
T ss_pred HHHHhhHHh--------hccCChhHHHHHHHHHHhh----CCCeEEEEEECCEEEEE--EEEEEEEecCcccCCCcccCC
Confidence 998775321 3457999999999988763 56789999999998874 577889999999999999999
Q ss_pred CCCCCCCCCCCcccCCCeEEEEEEcCcccchhhh------hc---cCCceEEeEeeEEEEEeCCCccEEEcCCCCCCCce
Q 004734 604 NEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQ------VG---LSRARRLAQGQSIRIQLFAPLPVQIDGEPWFQQPC 674 (732)
Q Consensus 604 ~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~------~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~~~P~ 674 (732)
.+ +++||+|||+.+.....+..+. .| ..+.+++.++++++|++.+++++|+|||.+...|+
T Consensus 201 ~a----------~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~~DGE~~~~~p~ 270 (287)
T PRK13057 201 DA----------TIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRKPRPINTDGELTTYTPA 270 (287)
T ss_pred CC----------CCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCCCcEEeeCCccCCCCCE
Confidence 88 6899999999998653322221 12 24569999999999999999999999999999999
Q ss_pred EEEEEecceeEEEecC
Q 004734 675 TLAISHHGQAFMLKRA 690 (732)
Q Consensus 675 ~I~I~~~~~~~ml~~~ 690 (732)
+|+|.|+++.+++|.+
T Consensus 271 ~i~v~p~al~v~~p~~ 286 (287)
T PRK13057 271 HFRVLPKALRVLAPPP 286 (287)
T ss_pred EEEEECCeEEEEcCCC
Confidence 9999999999999763
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1.6e-41 Score=364.86 Aligned_cols=284 Identities=20% Similarity=0.218 Sum_probs=230.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
++++++|+||.||++.+.+.++++...|..... +.+..|+.++++.++++++ ..+.|||+|||||||+|+|++..
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~- 86 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAG- 86 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhcc-
Confidence 578999999999999888888888877765433 4545567788998888775 35789999999999999999974
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeecc
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsI 518 (732)
.++||||||+||||||||+||++. .++.++++.+..+.+..+|.++++..+ ...++|+|++|+
T Consensus 87 ---~~~~lgiiP~GT~NdfAr~lg~~~--------~~~~~a~~~i~~g~~~~iDlg~v~~~~------~~~~~f~n~~~~ 149 (306)
T PRK11914 87 ---TDIPLGIIPAGTGNDHAREFGIPT--------GDPEAAADVIVDGWTETVDLGRIQDDD------GIVKWFGTVAAT 149 (306)
T ss_pred ---CCCcEEEEeCCCcchhHHHcCCCC--------CCHHHHHHHHHcCCceEEEEEEEecCC------CCcEEEEEEEee
Confidence 468999999999999999999863 135667777888888899988775321 134799999999
Q ss_pred chhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECC-EEEEecCCeeEEEEeccCcccC
Q 004734 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDG-TEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 519 G~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG-~~i~lp~~~~~l~v~Nip~~gG 597 (732)
|+||.|+...++.| ..+|+++|...+++.+++ ..++++++++|| +.++ .++..++|+|.++|||
T Consensus 150 G~~a~v~~~~~~~k---------~~~G~~aY~~~~l~~l~~----~~~~~~~i~~dg~~~~~--~~~~~~~v~N~~~~GG 214 (306)
T PRK11914 150 GFDSLVTDRANRMR---------WPHGRMRYNLAMLAELSK----LRPLPFRLVLDGTEEIV--TDLTLAAFGNTRSYGG 214 (306)
T ss_pred ehHHHHHHHHHhcc---------ccCCchhhHHHHHHHHHh----cCCCcEEEEEeCCeEEE--eeEEEEEEeCcccccC
Confidence 99999997765432 225899999999988864 567889999999 6655 3688899999999999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhh------hc---cCCceEEeEeeEEEEEeCCCccEEEcCCC
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQ------VG---LSRARRLAQGQSIRIQLFAPLPVQIDGEP 668 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~------~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~ 668 (732)
|+.++|.+ +++||+|||+.+.....+..+. .| ..+.+.+.++++++|+.. ++++++|||+
T Consensus 215 ~~~~~p~a----------~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-~~~~~~DGE~ 283 (306)
T PRK11914 215 GMLICPNA----------DHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-GINAYADGDF 283 (306)
T ss_pred CceeCCCC----------cCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-CcceecCCCc
Confidence 99999998 6899999999998654333221 12 134688899999999986 5799999999
Q ss_pred CCCCceEEEEEecceeEEEecC
Q 004734 669 WFQQPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 669 ~~~~P~~I~I~~~~~~~ml~~~ 690 (732)
....|++|++.|+++.+++|.+
T Consensus 284 ~~~~p~~i~v~p~al~v~vp~~ 305 (306)
T PRK11914 284 ACPLPAEISAVPGALQILRPRP 305 (306)
T ss_pred CCCCceEEEEEcCeEEEECCCC
Confidence 9888999999999999999764
No 6
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.3e-40 Score=357.61 Aligned_cols=285 Identities=18% Similarity=0.228 Sum_probs=230.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
++++++|+||+||++++.+.+..+...|..... +++..|+.++++.++++++ ..+.||++||||||++|+|++...
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~ 80 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEK 80 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhC
Confidence 367999999999998877777777777765543 5666677889998888775 357899999999999999999764
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeecc
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsI 518 (732)
. .++||||||.||||||||+||++. ++.++++.+..+....+|..++ +.++|+|.+|+
T Consensus 81 ~--~~~~lgiiP~GT~NdfAr~lgi~~---------~~~~a~~~i~~g~~~~vDlg~v-----------n~~~fln~~g~ 138 (304)
T PRK13337 81 E--NRPKLGIIPVGTTNDFARALHVPR---------DIEKAADVIIEGHTVPVDIGKA-----------NNRYFINIAGG 138 (304)
T ss_pred C--CCCcEEEECCcCHhHHHHHcCCCC---------CHHHHHHHHHcCCeEEEEEEEE-----------CCEEEEeeehh
Confidence 2 358999999999999999999863 3566777777777776776444 35799999999
Q ss_pred chhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCC
Q 004734 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGG 598 (732)
Q Consensus 519 G~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG 598 (732)
|+||.|+.+... + .++.+|+++|...+++.+.+ ..++++++++||+.+.. +...++|+|.++||||
T Consensus 139 G~~a~v~~~~~~-~-------~k~~~G~~aY~~~~~~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~gg~ 204 (304)
T PRK13337 139 GRLTELTYEVPS-K-------LKTMLGQLAYYLKGIEMLPS----LKATDVRIEYDGKLFQG--EIMLFLLGLTNSVGGF 204 (304)
T ss_pred hHHHHHHHhcCH-H-------HhcCcccHHHHHHHHHHHhh----CCCceEEEEECCeEEEe--EEEEEEEEcCcccCCc
Confidence 999999976542 1 13457899999999877653 56788999999997763 5788999999999999
Q ss_pred cccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhh------hhc---cCCceEEeEeeEEEEEeCCCccEEEcCCCC
Q 004734 599 VDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKL------QVG---LSRARRLAQGQSIRIQLFAPLPVQIDGEPW 669 (732)
Q Consensus 599 ~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l------~~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~~ 669 (732)
+.++|.+ +++||+|||+.+.....+..+ ..| ..+.+.+.++++++|+..+++++|+|||+.
T Consensus 205 ~~~~p~a----------~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~~~~~iDGE~~ 274 (304)
T PRK13337 205 EKLAPDA----------SLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFDKMQLNLDGEYG 274 (304)
T ss_pred cccCCcc----------cCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCCCCeEEeCCCcC
Confidence 9999987 689999999999875333222 112 235688999999999999999999999999
Q ss_pred CCCceEEEEEecceeEEEecCCCC
Q 004734 670 FQQPCTLAISHHGQAFMLKRAAEE 693 (732)
Q Consensus 670 ~~~P~~I~I~~~~~~~ml~~~~~~ 693 (732)
...|++|++.|+++.+++|...+.
T Consensus 275 ~~~p~~i~v~p~al~v~~p~~~~~ 298 (304)
T PRK13337 275 GKLPAEFENLYRHIEVFVPKDQEN 298 (304)
T ss_pred CCCCEEEEEecceEEEEecccccc
Confidence 999999999999999999776543
No 7
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.8e-40 Score=352.57 Aligned_cols=280 Identities=21% Similarity=0.169 Sum_probs=218.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
++++++|+||.||++++.+.+..++..|..... +.+..+....+ .+.+++. ..+.|+++|||||||+|+|++...
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~ 79 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYD-LKNAFKDIDESYKYILIAGGDGTVDNVVNAMKKL 79 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcch-HHHHHHHhhcCCCEEEEECCccHHHHHHHHHHhc
Confidence 357999999999999887777788877764431 22211222222 2333332 357899999999999999999864
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeecc
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsI 518 (732)
+ .++||||||+||||||||+||++. ++.+.++.+..+....+|.+++ +.+||+|++|+
T Consensus 80 ~--~~~~lgviP~GTgNdfAr~lgi~~---------~~~~a~~~i~~g~~~~vDlg~v-----------~~~~f~n~~~~ 137 (295)
T PRK13059 80 N--IDLPIGILPVGTANDFAKFLGMPT---------DIGEACEQILKSKPKKVDLGKI-----------NDKYFINVAST 137 (295)
T ss_pred C--CCCcEEEECCCCHhHHHHHhCCCC---------CHHHHHHHHHhCCcEEeeEEEE-----------CCEEEEEEEee
Confidence 3 468999999999999999999863 3566777777787777787554 34799999999
Q ss_pred chhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCC
Q 004734 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGG 598 (732)
Q Consensus 519 G~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG 598 (732)
|+||+|+...+.. .++.+|+++|+..+++.++. ..+++++++.||+.++. +...++|+|.+++| |
T Consensus 138 G~~a~v~~~~~~~--------~k~~~G~~aY~~~~~~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~N~~~~G-g 202 (295)
T PRK13059 138 GLFTDVSQKTDVN--------LKNTIGKLAYYLKGLEELPN----FRKLKVKVTSEEVNFDG--DMYLMLVFNGQTAG-N 202 (295)
T ss_pred eechhhhhhccHH--------HhhCcchHHHHHHHHHHHhc----CCCeeEEEEECCEEEEe--eEEEEEEEcCcccc-C
Confidence 9999999876421 13457999999999998763 56788999999998774 57888999999876 5
Q ss_pred cccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhh------hc---cCCc-eEEeEeeEEEEEeCCCccEEEcCCC
Q 004734 599 VDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQ------VG---LSRA-RRLAQGQSIRIQLFAPLPVQIDGEP 668 (732)
Q Consensus 599 ~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~------~g---l~~~-vrl~q~~~I~I~~~~~~pvqiDGE~ 668 (732)
+.++|.+ +++||+|||+.+.....+..+. .| ..+. +.+.++++++|+..+++++|+|||+
T Consensus 203 ~~~~p~a----------~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~~~~~~~DGE~ 272 (295)
T PRK13059 203 FNLAYKA----------EVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNEEIVTDIDGER 272 (295)
T ss_pred cccCCcc----------cCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCCCceEEeCCCc
Confidence 7898887 6899999999998754433221 12 1245 8999999999999999999999999
Q ss_pred CCCCceEEEEEecceeEEEecC
Q 004734 669 WFQQPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 669 ~~~~P~~I~I~~~~~~~ml~~~ 690 (732)
....|++|++.|+++.+++|..
T Consensus 273 ~~~~p~~i~v~p~al~v~~p~~ 294 (295)
T PRK13059 273 GPDFPLNIECIKGGLKVLGILD 294 (295)
T ss_pred CCCCcEEEEEecCeeEEEecCC
Confidence 9999999999999999999753
No 8
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=4.7e-40 Score=352.69 Aligned_cols=282 Identities=19% Similarity=0.148 Sum_probs=224.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
|+++++|+||++++. +.+..+...|....+ |++..|+.++++.++++++ ..+.||++|||||||+|+|+|.+.
T Consensus 3 ~~~~~~i~N~~~~~~---~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~ 79 (300)
T PRK13054 3 FPKSLLILNGKSAGN---EELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQL 79 (300)
T ss_pred CceEEEEECCCccch---HHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhh
Confidence 578999999998642 344445555654433 5666677888888888765 357899999999999999999865
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCc-eeeeeec
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK-FLNNYLG 517 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~-~f~Nyfs 517 (732)
....++||||||+||||||||+||++. ++.++++.+..+....+|.+.+ +.+ ||+|.+|
T Consensus 80 ~~~~~~~lgiiP~GTgNdfar~lgi~~---------~~~~a~~~i~~g~~~~iDlg~v-----------~~~~~f~n~~~ 139 (300)
T PRK13054 80 EGDARPALGILPLGTANDFATAAGIPL---------EPDKALKLAIEGRAQPIDLARV-----------NDRTYFINMAT 139 (300)
T ss_pred ccCCCCcEEEEeCCcHhHHHHhcCCCC---------CHHHHHHHHHhCCceEEEEEEE-----------cCceEEEEEee
Confidence 333468999999999999999999873 3677788888888888887655 224 9999999
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccC
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gG 597 (732)
+||||+|+.+..+. .++.+|+++|...+++.+++ ..+++++++.||+.++. +...++|+|.++|||
T Consensus 140 ~G~~a~v~~~~~~~--------~k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~N~~~~gg 205 (300)
T PRK13054 140 GGFGTRVTTETPEK--------LKAALGGVAYLIHGLMRMDT----LKPDRCEIRGPDFHWQG--DALVIGIGNGRQAGG 205 (300)
T ss_pred cchhHHHHHhhHHH--------HHhccchHHHHHHHHHHHhh----CCCeEEEEEeCCcEEEe--eEEEEEEECCCcCCC
Confidence 99999999876431 13457999999999988763 56788999999987763 688999999999999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCccc-chhh---hhc---cCCceEEeEeeEEEEEeCCCccEEEcCCCCC
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWH-LGKL---QVG---LSRARRLAQGQSIRIQLFAPLPVQIDGEPWF 670 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~-l~~l---~~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~ 670 (732)
|+.++|++ +++||+|||+.+..... +..+ ..+ ..+.+++.++++++|+..+++++|+|||+..
T Consensus 206 g~~~~p~a----------~~~DG~ldv~~~~~~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~~~~~~~iDGE~~~ 275 (300)
T PRK13054 206 GQQLCPEA----------LINDGLLDLRILPAPQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAPHELTFNLDGEPLS 275 (300)
T ss_pred CcccCCCC----------cCCCCeEEEEEECCHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcCCCCEEEeCCCcCC
Confidence 99999988 68999999999987111 1111 112 2356888999999999988999999999999
Q ss_pred CCceEEEEEecceeEEEecCC
Q 004734 671 QQPCTLAISHHGQAFMLKRAA 691 (732)
Q Consensus 671 ~~P~~I~I~~~~~~~ml~~~~ 691 (732)
..|++|++.|+++.+++|...
T Consensus 276 ~~p~~i~v~p~al~vl~p~~~ 296 (300)
T PRK13054 276 GRHFRIEVLPAALRCRLPPDC 296 (300)
T ss_pred CccEEEEEEcCeeEEEeCCCC
Confidence 999999999999999998654
No 9
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.2e-40 Score=358.04 Aligned_cols=287 Identities=18% Similarity=0.190 Sum_probs=229.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEecc-CCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHh
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSST-QGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t-~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
+++++||+||+||++++.+.+.+++.+|..... +++..+ ..++++.++++++ ..+.|||+|||||||+|+|+|..
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~ 81 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAP 81 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhh
Confidence 468999999999999988888999988876543 444323 3566787777665 35789999999999999999986
Q ss_pred cCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeec
Q 004734 438 QNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLG 517 (732)
Q Consensus 438 ~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~Nyfs 517 (732)
.. ..+||||||+||||||||+||++. .++.++++.+..+....+|...+. +.+||+|.+|
T Consensus 82 ~~--~~~~LgiiP~GTgNdfAr~Lgi~~--------~~~~~a~~~l~~g~~~~vD~g~v~----------~~~~F~n~ag 141 (334)
T PRK13055 82 LE--KRPKMAIIPAGTTNDYARALKIPR--------DNPVEAAKVILKNQTIKMDIGRAN----------EDKYFINIAA 141 (334)
T ss_pred cC--CCCcEEEECCCchhHHHHHcCCCC--------cCHHHHHHHHHcCCcEEeeEEEEC----------CCcEEEEEeh
Confidence 42 468999999999999999999863 135667777777777778876542 2479999999
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccC
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gG 597 (732)
+|+||.|+...+.. .++.+|+++|...+++.+++ ..++++++++||..... ...++++.|.++|||
T Consensus 142 ~G~da~v~~~~~~~--------~k~~~G~laY~~~~~~~l~~----~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~Gg 207 (334)
T PRK13055 142 GGSLTELTYSVPSQ--------LKSMFGYLAYLAKGAELLPR----VSPVPVRITYDEGVFEG--KISMFFLALTNSVGG 207 (334)
T ss_pred hccchHHHHhcCHH--------HHhhccHHHHHHHHHHHHHh----cCCeeEEEEECCEEEEE--EEEEEEEEcCcccCC
Confidence 99999999765432 13457999999999888764 56788999999987663 577888999999999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchh------hhh-c---cCCceEEeEeeEEEEEeCC--CccEEEc
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGK------LQV-G---LSRARRLAQGQSIRIQLFA--PLPVQID 665 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~------l~~-g---l~~~vrl~q~~~I~I~~~~--~~pvqiD 665 (732)
|+.++|.+ +++||.|||+.+.....+.. +.. | ..+.+++.++++++|+... ++++|+|
T Consensus 208 ~~~~~p~a----------~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~~~~~~~iD 277 (334)
T PRK13055 208 FEQIVPDA----------KLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLGDDRLMVNLD 277 (334)
T ss_pred ccccCCCC----------cCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCCCCcceEeeC
Confidence 99999987 68999999999987533221 223 3 1356889999999999853 5999999
Q ss_pred CCCCCCCceEEEEEecceeEEEecCCCC
Q 004734 666 GEPWFQQPCTLAISHHGQAFMLKRAAEE 693 (732)
Q Consensus 666 GE~~~~~P~~I~I~~~~~~~ml~~~~~~ 693 (732)
||+....|++|++.|+++.+++|....+
T Consensus 278 GE~~~~~pv~i~v~p~al~v~~p~~~~~ 305 (334)
T PRK13055 278 GEYGGDAPMTFENLKQHIEFFANTDEIS 305 (334)
T ss_pred CCcCCCCcEEEEEEcCeEEEEeCcccCc
Confidence 9999999999999999999999766544
No 10
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=3.6e-40 Score=352.45 Aligned_cols=280 Identities=19% Similarity=0.149 Sum_probs=219.3
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhcCC
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQNF 440 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~~~ 440 (732)
++++|+||+||..+ .+.++...|....+ |++..|+.++++.++++++ ..+.|+|+|||||||+|+|+|...+.
T Consensus 1 ~~~~I~N~~~~~~~---~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~ 77 (293)
T TIGR03702 1 KALLILNGKQADNE---DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRD 77 (293)
T ss_pred CEEEEEeCCccchh---HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCC
Confidence 37899999988433 34444555554443 5555677888888888774 35789999999999999999986543
Q ss_pred CCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccch
Q 004734 441 VSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGC 520 (732)
Q Consensus 441 ~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG~ 520 (732)
..++|+||||+||||||||+||++. ++.++++.+..+....+|...+. + .+||+|.+|+||
T Consensus 78 ~~~~~lgiiP~GTgNdfAr~l~ip~---------~~~~a~~~i~~g~~~~iDlg~v~-----~-----~~~f~n~~~~G~ 138 (293)
T TIGR03702 78 DAAPALGLLPLGTANDFATAAGIPL---------EPAKALKLALNGAAQPIDLARVN-----G-----KHYFLNMATGGF 138 (293)
T ss_pred CCCCcEEEEcCCchhHHHHhcCCCC---------CHHHHHHHHHhCCceeeeEEEEC-----C-----ccEEEEEeeccc
Confidence 3457999999999999999999873 35667777777888888875541 1 269999999999
Q ss_pred hHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCCcc
Q 004734 521 DAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGGVD 600 (732)
Q Consensus 521 DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~ 600 (732)
||+|+.+.+.. .++.+|+++|+.++++.+++ ..+++++++.|+..+. .+...++|+|.++||||+.
T Consensus 139 da~v~~~~~~~--------~k~~~G~~aY~~~~l~~l~~----~~~~~~~i~~~~~~~~--~~~~~~~v~N~~~~GGg~~ 204 (293)
T TIGR03702 139 GTRVTTETSEK--------LKKALGGAAYLITGLTRFSE----LTAASCEFRGPDFHWE--GDFLALGIGNGRQAGGGQV 204 (293)
T ss_pred chHhhhhhhHH--------HHhccchHHHHHHHHHHHhh----CCCeEEEEEECCEEEE--eeEEEEEEECCCcCCCCce
Confidence 99999876532 13457999999999988763 4568888888887765 3578889999999999999
Q ss_pred cCCCCCCCCCCCCCcccCCCeEEEEEEcCcccch----hhhhcc-CCceEEeEeeEEEEEeCCCccEEEcCCCCCCCceE
Q 004734 601 LWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLG----KLQVGL-SRARRLAQGQSIRIQLFAPLPVQIDGEPWFQQPCT 675 (732)
Q Consensus 601 l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~----~l~~gl-~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~~~P~~ 675 (732)
+.|.+ +++||.|||+.+.....+- .+..|. .+.+...++++++|+..+++++|+|||+....|++
T Consensus 205 i~P~A----------~~~DG~Ldv~~v~~~~~~~~~l~~~~~g~~~~~~~~~~~~~i~i~~~~~~~~~vDGE~~~~~p~~ 274 (293)
T TIGR03702 205 LCPDA----------LINDGLLDVRILPAPELLPATLSTLFGGDKNPEFVRARLPWLEIEAPQPLTFNLDGEPLSGRHFR 274 (293)
T ss_pred eCCCC----------ccCCceEEEEEeCCHHHHHHHHHHHhcCCCCCcEEEEEcCEEEEEeCCCcEEEECCCcCCCceEE
Confidence 99998 6899999999998732211 111232 23456677899999999999999999999999999
Q ss_pred EEEEecceeEEEecC
Q 004734 676 LAISHHGQAFMLKRA 690 (732)
Q Consensus 676 I~I~~~~~~~ml~~~ 690 (732)
|++.|+++.+++|..
T Consensus 275 i~v~p~al~v~~p~~ 289 (293)
T TIGR03702 275 IEVLPGALRCHLPPG 289 (293)
T ss_pred EEEEcCeEEEEcCCC
Confidence 999999999999754
No 11
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=6.2e-40 Score=351.71 Aligned_cols=281 Identities=17% Similarity=0.153 Sum_probs=224.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhcC
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQN 439 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~~ 439 (732)
+++++||+||.||++++.+.+++++.+|...--|++..|+.++++.++++++ ..+.|+++|||||||+|+|++..
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~-- 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG-- 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc--
Confidence 4689999999999998878888888888764225666677888898888775 35789999999999999999975
Q ss_pred CCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccc
Q 004734 440 FVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVG 519 (732)
Q Consensus 440 ~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG 519 (732)
..+||||||+||||||||+||++. ++.+.++.+.++....+|...+ +.++|+|.+|+|
T Consensus 80 --~~~~lgviP~GTgNdfAr~lgi~~---------~~~~a~~~i~~g~~~~iDlg~v-----------n~~~fin~a~~G 137 (300)
T PRK00861 80 --TDIPLGIIPRGTANAFAAALGIPD---------TIEEACRTILQGKTRRVDVAYC-----------NGQPMILLAGIG 137 (300)
T ss_pred --CCCcEEEEcCCchhHHHHHcCCCC---------CHHHHHHHHHcCCcEEeeEEEE-----------CCEEEEEEEecc
Confidence 468999999999999999999873 3667778888888888887554 347999999999
Q ss_pred hhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCCc
Q 004734 520 CDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGGV 599 (732)
Q Consensus 520 ~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~ 599 (732)
+||+|+....+. .++.+|+++|++.+++.+++ ..+++++++.||+.++. ...+++|+|.+++++.+
T Consensus 138 ~~a~v~~~~~~~--------~k~~~G~~aY~~~~l~~l~~----~~~~~~~i~~dg~~~~~--~~~~i~v~N~~~~~~~~ 203 (300)
T PRK00861 138 FEAETVEEADRE--------AKNRFGILAYILSGLQQLRE----LESFEVEIETEDQIITT--NAVAVTVANAAPPTSVL 203 (300)
T ss_pred HHHHHHHHhhHH--------HHhcccHHHHHHHHHHHhcc----CCCeeEEEEECCeEEEE--EEEEEEEECCCCccccc
Confidence 999999876432 13457899999999988763 56789999999998764 57789999997543221
Q ss_pred c-cCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhh----------hhc---cCCceEEeEeeEEEEEeCCCccEEEc
Q 004734 600 D-LWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKL----------QVG---LSRARRLAQGQSIRIQLFAPLPVQID 665 (732)
Q Consensus 600 ~-l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l----------~~g---l~~~vrl~q~~~I~I~~~~~~pvqiD 665 (732)
. -.|.+ .++||+|||+.+.....+..+ ..| ..+.+++.++++++|++.+++++|+|
T Consensus 204 ~~g~p~a----------~~~DG~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~~~~~~~D 273 (300)
T PRK00861 204 AQGPGAV----------IPDDGLLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTDPPQKVVID 273 (300)
T ss_pred ccCCCCC----------CCCCceEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeCCCeEEEEC
Confidence 1 02333 689999999999865433221 112 23568999999999999999999999
Q ss_pred CCCCCCCceEEEEEecceeEEEecCC
Q 004734 666 GEPWFQQPCTLAISHHGQAFMLKRAA 691 (732)
Q Consensus 666 GE~~~~~P~~I~I~~~~~~~ml~~~~ 691 (732)
||+....|++|+|.|+++.+++|.+.
T Consensus 274 GE~~~~~p~~i~v~p~al~v~~p~~~ 299 (300)
T PRK00861 274 GEVVGTTPIEIECLPRSLKVFAPLQA 299 (300)
T ss_pred CccCCCceEEEEEECCEEEEEeCCCC
Confidence 99999999999999999999997764
No 12
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=1.4e-39 Score=347.68 Aligned_cols=279 Identities=21% Similarity=0.239 Sum_probs=223.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
|+++++|+||.||++.+.+.++++...|....+ +.+..++.++++.+++++. ..+.|+++|||||+++|++++...
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~ 80 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQL 80 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcC
Confidence 468999999999998888888888888866544 5555555665555555433 357899999999999999999763
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCce-eeeeec
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKF-LNNYLG 517 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~-f~Nyfs 517 (732)
...|||||||+||+|||||+||++. ++.+.++.+.++....+|...+ +.++ |+|++|
T Consensus 81 --~~~~~lgiiP~Gt~N~~a~~l~i~~---------~~~~~~~~l~~~~~~~~Dlg~v-----------~~~~~fln~~g 138 (293)
T TIGR00147 81 --DDIPALGILPLGTANDFARSLGIPE---------DLDKAAKLVIAGDARAIDMGQV-----------NKQYCFINMAG 138 (293)
T ss_pred --CCCCcEEEEcCcCHHHHHHHcCCCC---------CHHHHHHHHHcCCceEEEEEEE-----------CCeEEEEEEEe
Confidence 2357999999999999999999863 3566777777777777776543 3478 999999
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccC
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gG 597 (732)
+|+||+++.+++.. .++.+|+++|..++++.+. +..++++++++||+.++. +...++++|.++|||
T Consensus 139 ~G~~a~v~~~~~~~--------~k~~~g~~~Y~~~~l~~l~----~~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~gg 204 (293)
T TIGR00147 139 GGFGTEITTETPEK--------LKAALGSLSYILSGLMRMD----TLQPFRCEIRGEGEHWQG--EAVVFLVGNGRQAGG 204 (293)
T ss_pred echhhHhHhhCCHH--------HHhccchHHHHHHHHHHHh----hCCCeeEEEEECCeEEEe--eEEEEEEeCCcccCC
Confidence 99999999876421 2345799999999988875 356788999999998874 567788889999999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhh------hhc---cCCceEEeEeeEEEEEeCCCccEEEcCCC
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKL------QVG---LSRARRLAQGQSIRIQLFAPLPVQIDGEP 668 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l------~~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~ 668 (732)
|+.++|.+ +++||.|||+.+.....+..+ ..| ..+.+++.++++++|++++++++|+|||+
T Consensus 205 ~~~~~p~a----------~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~~~~~iDGE~ 274 (293)
T TIGR00147 205 GQKLAPDA----------SINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTPHKITFNLDGEP 274 (293)
T ss_pred CcccCCcc----------ccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcCCCcEEEeCCCc
Confidence 99999887 689999999999865433222 122 24568999999999999999999999999
Q ss_pred CCCCceEEEEEecceeEEE
Q 004734 669 WFQQPCTLAISHHGQAFML 687 (732)
Q Consensus 669 ~~~~P~~I~I~~~~~~~ml 687 (732)
+...|++|+|.|+++.+++
T Consensus 275 ~~~~p~~i~v~p~al~~~~ 293 (293)
T TIGR00147 275 LGGTPFHIEILPAHLRCRL 293 (293)
T ss_pred CCCCcEEEEEEhhccEEeC
Confidence 9999999999999998874
No 13
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=9.7e-38 Score=334.11 Aligned_cols=284 Identities=25% Similarity=0.356 Sum_probs=233.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
++++.+|+||.||.+.+.++++.++..|..+.+ +....++.+++|.++++++ ..+.|+++|||||||+|+|+|.+.
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~ 81 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGT 81 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcC
Confidence 578999999999999999999999998876643 4445556668999999886 478999999999999999999985
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCc-eeeeeec
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK-FLNNYLG 517 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~-~f~Nyfs 517 (732)
+. ++|||||+||+|||||+|||+. .++.++++-+.++..+.+|..+ .+.+ ||+|.+|
T Consensus 82 ~~---~~LgilP~GT~NdfAr~Lgip~--------~~~~~Al~~i~~g~~~~vDlg~-----------~~~~~~fin~a~ 139 (301)
T COG1597 82 DD---PPLGILPGGTANDFARALGIPL--------DDIEAALELIKSGETRKVDLGQ-----------VNGRRYFINNAG 139 (301)
T ss_pred CC---CceEEecCCchHHHHHHcCCCc--------hhHHHHHHHHHcCCeEEEeehh-----------cCCcceEEEEee
Confidence 42 3399999999999999999984 2367777777777777766541 1334 9999999
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccC
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gG 597 (732)
+|++|+++.+.+..|. +.+|.++|+..++..+. ...++.+++++|++.++. ....+++.|.+++||
T Consensus 140 ~G~~a~~~~~~~~~~k--------~~~g~~~y~~~~~~~l~----~~~~~~~~i~~d~~~~~~--~~~~~~~~~~~~~gg 205 (301)
T COG1597 140 IGFDAEVVAAVEEERK--------KGFGRLAYALAGLAVLA----RLKPFRIEIEYDGKTFEG--EALALLVFNGNSYGG 205 (301)
T ss_pred cchhHHHHHhhcHHHH--------hccchHHHHHHHHHhcc----ccCCCcEEEEEcCcEEEE--EEEEEEEecCccccc
Confidence 9999999998775543 34789999999887764 357889999999999984 577788888889999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchh------hhhc---cCCceEEeEeeEEEEEeCCCccEEEcCCC
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGK------LQVG---LSRARRLAQGQSIRIQLFAPLPVQIDGEP 668 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~------l~~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~ 668 (732)
+..+.|++ +++||+|+++.+........ +..| ....+.+.+++.++|++..++++++|||+
T Consensus 206 ~~~~~p~a----------~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~~~~~~DGE~ 275 (301)
T COG1597 206 GMKLAPDA----------SLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSDPPIPVNLDGEY 275 (301)
T ss_pred ccccCCcC----------CCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcCCCceEeeCCcc
Confidence 99999988 79999999999997532221 1222 12348999999999999999999999999
Q ss_pred CCCCceEEEEEecceeEEEecCCC
Q 004734 669 WFQQPCTLAISHHGQAFMLKRAAE 692 (732)
Q Consensus 669 ~~~~P~~I~I~~~~~~~ml~~~~~ 692 (732)
....|++|++.|+++.+++|....
T Consensus 276 ~~~~p~~i~~~p~al~vl~p~~~~ 299 (301)
T COG1597 276 LGKTPVTIEVLPGALRVLVPPDRP 299 (301)
T ss_pred CCCCcEEEEEecccEEEEcCCCCC
Confidence 999999999999999999998654
No 14
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=5.2e-37 Score=354.37 Aligned_cols=280 Identities=19% Similarity=0.250 Sum_probs=223.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhcC
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQN 439 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~~ 439 (732)
.+++++|+||+||++++.+.+++++..|...--+++..|+.++++.++++++ ..+.|+|+||||||++|+|++.+
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l~~-- 319 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASELVN-- 319 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHhc--
Confidence 4789999999999999999999999988865225566677788888888776 34789999999999999999985
Q ss_pred CCCCCcEEEeeCCCcchhhHhh-cCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeecc
Q 004734 440 FVSPPPVAILPAGTGNDLARVL-FWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (732)
Q Consensus 440 ~~~~ppvaILPlGTGNDlAR~L-gwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsI 518 (732)
.++++||||+||||||||+| |++..+ .++.+.++.+.++....+|...+ +.++|+|++|+
T Consensus 320 --~~~~lgiiP~GTgNdfAr~L~gi~~~~------~~~~~a~~~i~~g~~~~iD~g~v-----------n~~~fln~agi 380 (547)
T PRK12361 320 --TDITLGIIPLGTANALSHALFGLGSKL------IPVEQACDNIIQGHTQRIDTARC-----------NDRLMLLLVGI 380 (547)
T ss_pred --CCCCEEEecCCchhHHHHHhcCCCCCC------ccHHHHHHHHHhCCCeEEEEEEE-----------cCeEEEEEEee
Confidence 46899999999999999999 887321 24677777888888888887544 35799999999
Q ss_pred chhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcc---
Q 004734 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSY--- 595 (732)
Q Consensus 519 G~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~--- 595 (732)
|+||+|+.+.+..+ ++.+|+++|...+++.+.+ ..++++++++||++... .+...++|+|.++|
T Consensus 381 G~da~v~~~~~~~~--------k~~~G~laY~~~~~~~l~~----~~~~~l~i~~dg~~~~~-~~~~~l~v~N~~~~~~~ 447 (547)
T PRK12361 381 GFEQKMIESADRER--------KNALGQLAYLDGLWRAVNE----NETLTLTVTLDDAEPQT-ISTHSLVVANAAPFTSL 447 (547)
T ss_pred chhHHHHHhccHHH--------HhccCHHHHHHHHHHHhhc----CCCeeEEEEECCCCceE-EEEEEEEEEcCCCcccc
Confidence 99999998765322 3457999999988888763 57789999999975432 25778889998665
Q ss_pred ---cCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc----cchh----hhhc-----cCCceEEeEeeEEEEEeCCC
Q 004734 596 ---MGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW----HLGK----LQVG-----LSRARRLAQGQSIRIQLFAP 659 (732)
Q Consensus 596 ---gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~----~l~~----l~~g-----l~~~vrl~q~~~I~I~~~~~ 659 (732)
|||. ++++||.|||+.+.... ++.. +..+ ..+.+++.++++++|+..++
T Consensus 448 ~~~Ggg~---------------~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~~~ 512 (547)
T PRK12361 448 LAQGGGE---------------PNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQKP 512 (547)
T ss_pred cccCCCC---------------CCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeCCc
Confidence 3331 26899999999998642 1111 1111 24568999999999999999
Q ss_pred ccEEEcCCCCCCCceEEEEEecceeEEEecCC
Q 004734 660 LPVQIDGEPWFQQPCTLAISHHGQAFMLKRAA 691 (732)
Q Consensus 660 ~pvqiDGE~~~~~P~~I~I~~~~~~~ml~~~~ 691 (732)
+++|+|||+....|++|+|.|+++.+++|...
T Consensus 513 ~~~~iDGE~~~~~p~~i~v~p~al~vlvp~~~ 544 (547)
T PRK12361 513 IKYVIDGELFEDEDLTIEVQPASLKVFVPYQE 544 (547)
T ss_pred eEEEECCccCCceEEEEEEecCceEEEecCcc
Confidence 99999999999999999999999999998654
No 15
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=6.9e-37 Score=346.17 Aligned_cols=287 Identities=18% Similarity=0.152 Sum_probs=219.3
Q ss_pred CCCcEEEEEcCCCCCCChhhHHH-HHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHH
Q 004734 362 DARPLLVFINKKSGAQRGDSLRQ-RLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 362 ~~~pllV~vNPkSG~~~g~~~~~-~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
.+++++||+||.||++++.+++. .++.+|....+ +++..|+.+++|.++++++ .++.|||+|||||||+|+|+|.
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL~ 189 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGLL 189 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHh
Confidence 45789999999999999888764 68888877654 6777788999999999876 3678999999999999999997
Q ss_pred hcCC---CCCCcEEEeeCCCcchhhHhh----cCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCC
Q 004734 437 KQNF---VSPPPVAILPAGTGNDLARVL----FWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPP 509 (732)
Q Consensus 437 ~~~~---~~~ppvaILPlGTGNDlAR~L----gwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~ 509 (732)
..+. ..++||||||+||||||||+| |++. ++.+.+..|..+....+|.+.+.- +. ..
T Consensus 190 ~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~---------~~~~A~~~I~~g~~~~vDlg~v~~----~~---~~ 253 (481)
T PLN02958 190 EREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPC---------SATNAVLAIIRGHKCSLDVATILQ----GE---TK 253 (481)
T ss_pred hCccccccccCceEEecCcCcchhhhhhccccCCCc---------CHHHHHHHHHcCCceEEeEEEEEc----CC---ce
Confidence 6421 236899999999999999999 7652 356666778888889999887641 11 12
Q ss_pred ceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEE---------------C
Q 004734 510 KFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVV---------------D 574 (732)
Q Consensus 510 ~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~---------------D 574 (732)
.||+|.+|+||||+|....+. +|++|+++|..++++.++. ...++++|.. +
T Consensus 254 ~f~vn~~g~GfdAdV~~~se~----------kr~lG~lrY~~~~l~~l~~----~r~y~~~I~~~~a~~~~~~~~~~~~~ 319 (481)
T PLN02958 254 FFSVLMLAWGLVADIDIESEK----------YRWMGSARLDFYGLQRILC----LRQYNGRISFVPAPGFEAYGEPTSYN 319 (481)
T ss_pred EEEEEeeeeehhhhhhccccc----------ccccchHHHHHHHHHHHHh----cCCcceEEEEEecccccccccccccc
Confidence 345899999999999654221 3568999999999999874 3445555542 2
Q ss_pred CE----E---------EEe-------------cCCeeEEEEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEc
Q 004734 575 GT----E---------IEV-------------PEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSIS 628 (732)
Q Consensus 575 G~----~---------i~l-------------p~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~ 628 (732)
++ + ++. ...+.+++++|.++||||+.+.|++ +++||+|||+.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A----------~l~DG~LDlviv~ 389 (481)
T PLN02958 320 GESTSKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDA----------KFSDGYLDLILIK 389 (481)
T ss_pred ccccccccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcc----------cCCCCeEEEEEEc
Confidence 22 0 000 0012335589999999999999998 6999999999999
Q ss_pred Ccccchhhh------hc---cCCceEEeEeeEEEEEeC-------CCccEEEcCCCCCCCceEEEEEecceeEEEe
Q 004734 629 GTWHLGKLQ------VG---LSRARRLAQGQSIRIQLF-------APLPVQIDGEPWFQQPCTLAISHHGQAFMLK 688 (732)
Q Consensus 629 ~~~~l~~l~------~g---l~~~vrl~q~~~I~I~~~-------~~~pvqiDGE~~~~~P~~I~I~~~~~~~ml~ 688 (732)
....+..+. .| ..+.+.+.++++++|+.. ++.++++|||+....|++|++.|+++.++-|
T Consensus 390 ~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~~~ 465 (481)
T PLN02958 390 DCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSYDK 465 (481)
T ss_pred CCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeeccccccccCc
Confidence 765433322 12 135689999999999983 3468999999999999999999999888754
No 16
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=100.00 E-value=8e-37 Score=298.90 Aligned_cols=158 Identities=46% Similarity=0.832 Sum_probs=149.9
Q ss_pred eeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEe
Q 004734 511 FLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVA 590 (732)
Q Consensus 511 ~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~ 590 (732)
+|+||||||+||+|+++||+.|+++|++|+||+.||++|+..|+++++.+.+++++..+++++||+.+++|.++++|+++
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~l 80 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFL 80 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEE
Confidence 49999999999999999999999999999999999999999999999988888999999999999999998789999999
Q ss_pred ccCcccCCcccCCCCCCCCC--CCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeCC-CccEEEcCC
Q 004734 591 NIGSYMGGVDLWQNEDENYD--NFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLFA-PLPVQIDGE 667 (732)
Q Consensus 591 Nip~~gGG~~l~~~a~~~~~--~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~~-~~pvqiDGE 667 (732)
|||||+||.++|+....... .|..++++||+|||+++++.+|+++++.++..++|++||++|+|++.+ ++|||||||
T Consensus 81 NIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~~~~~hl~~~~~g~~~~~rl~Q~~~i~i~~~~~~~~~QvDGE 160 (161)
T PF00609_consen 81 NIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGFRGSFHLGQIQAGLSSAKRLAQGRPIRIETKENKVPFQVDGE 160 (161)
T ss_pred ccccccCCcccccCCcccccccccccccccCceEEEEEEcCchhhhhhhhccCCceEeecCCEEEEEECCCceeEEeCCC
Confidence 99999999999998754332 588899999999999999999999999999999999999999999999 999999999
Q ss_pred C
Q 004734 668 P 668 (732)
Q Consensus 668 ~ 668 (732)
|
T Consensus 161 p 161 (161)
T PF00609_consen 161 P 161 (161)
T ss_pred C
Confidence 7
No 17
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=7.8e-33 Score=312.45 Aligned_cols=308 Identities=17% Similarity=0.165 Sum_probs=225.3
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC------CCCeEEEEcCchhHHHHHH
Q 004734 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV------PHFRVLVCGGDGTVGWVLN 433 (732)
Q Consensus 361 ~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~------~~~~Ivv~GGDGTV~~VLn 433 (732)
...++++|||||.||++++.+.++.+..+|..+.+ +++..|+.+++|.++++++ .++.||++|||||+|+|+|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlN 236 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILN 236 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHH
Confidence 45689999999999999999999999999987665 6777788999999887542 3578999999999999999
Q ss_pred HHHhcCC----------------------------------------------------------------------CCC
Q 004734 434 AIDKQNF----------------------------------------------------------------------VSP 443 (732)
Q Consensus 434 ~l~~~~~----------------------------------------------------------------------~~~ 443 (732)
+|..... ...
T Consensus 237 GL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (601)
T PLN02204 237 GYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNER 316 (601)
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9963210 135
Q ss_pred CcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccC--CcccCCCceeeeeeccchh
Q 004734 444 PPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQ--GKLLEPPKFLNNYLGVGCD 521 (732)
Q Consensus 444 ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~--g~~~~~~~~f~NyfsIG~D 521 (732)
++|||||.|||||||+++..+ .++.+.+..|..+..+.||..++.-.... .......+||.|.+|+||+
T Consensus 317 ~~lGIIPaGSgN~~a~~~~g~---------~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~ 387 (601)
T PLN02204 317 FRFGIIPAGSTDAIVMCTTGE---------RDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFY 387 (601)
T ss_pred ceEEEECCccHHHHHHHccCC---------CCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchH
Confidence 789999999999999998643 23566777788899999999887532110 0001134899999999999
Q ss_pred HHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecC------------C---e--
Q 004734 522 AKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPE------------D---A-- 584 (732)
Q Consensus 522 A~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~------------~---~-- 584 (732)
|+|+.+.++ +|++|+++|..+|++.+++ ...+.++|.+|+...+... + +
T Consensus 388 gdVi~esek----------~R~mG~~rY~~~g~k~~~~----~r~y~~~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~c 453 (601)
T PLN02204 388 GDVISESEK----------YRWMGPKRYDYAGTKVFLK----HRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKIVC 453 (601)
T ss_pred HHHHHHhhh----------hcccchHHHHHHHHHHHHh----CCCceEEEEECCeEeeecccccccccccccccccchhh
Confidence 999977433 3458999999999999874 6778999999998765311 0 0
Q ss_pred -eEEEEeccCc---------------------cc----CCcccCCCC--CCCCCCCCCcccCCCeEEEEEEcCcccchh-
Q 004734 585 -EGVLVANIGS---------------------YM----GGVDLWQNE--DENYDNFDPQSMHDKVLEVVSISGTWHLGK- 635 (732)
Q Consensus 585 -~~l~v~Nip~---------------------~g----GG~~l~~~a--~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~- 635 (732)
..+.|+|.++ +| +|..+.+.. ...+.......++||.|||+.++...++..
T Consensus 454 ~~~c~Vcn~~~~~~~~~~~p~~~~~~~~W~~~~G~f~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L 533 (601)
T PLN02204 454 RTNCSVCNTKVSTNSPSTTPNSCPEETRWLRSKGRFLSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYL 533 (601)
T ss_pred hhheeeecccccccccccccccccccccceeecCceEEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHH
Confidence 1366777541 12 221111110 000111122478999999999987653322
Q ss_pred -----hh-hc-c---CCceEEeEeeEEEEEeC-CCccEEEcCCCCCCCceEEEEEecceeEEEecCC
Q 004734 636 -----LQ-VG-L---SRARRLAQGQSIRIQLF-APLPVQIDGEPWFQQPCTLAISHHGQAFMLKRAA 691 (732)
Q Consensus 636 -----l~-~g-l---~~~vrl~q~~~I~I~~~-~~~pvqiDGE~~~~~P~~I~I~~~~~~~ml~~~~ 691 (732)
+. .| . .+.+.+.++++++|+.. ...++++|||++...|++++|.++.+.++.+.+.
T Consensus 534 ~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~~~~~~niDGE~~~~~~v~v~V~~~al~lfa~g~e 600 (601)
T PLN02204 534 WHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFGDESVWNLDGEIFQAHQLSAQVFRGLVNLFASGPE 600 (601)
T ss_pred HHHHHHHhhcCccCCCCcEEEEEeeEEEEEECCCCceEEeCCCcCCCccEEEEEEcCeeEEEecCCC
Confidence 22 12 1 24589999999999985 5678999999999999999999999999987653
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-24 Score=241.95 Aligned_cols=291 Identities=20% Similarity=0.217 Sum_probs=210.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHH-HHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHH
Q 004734 362 DARPLLVFINKKSGAQRGDSLR-QRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 362 ~~~pllV~vNPkSG~~~g~~~~-~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
..+++||||||++|.+++.+++ ..++.+|..+.+ |++..|++|.||.++++.. .++.|+++||||+++||||||.
T Consensus 178 r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEVlNGLl 257 (579)
T KOG1116|consen 178 RPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEVLNGLL 257 (579)
T ss_pred CCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHhhhccc
Confidence 4688999999999999997765 467888887777 8999999999999999987 4688999999999999999998
Q ss_pred hcCC---CCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceee
Q 004734 437 KQNF---VSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLN 513 (732)
Q Consensus 437 ~~~~---~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~ 513 (732)
.... ....|||+||+||||+||.+++|-.|+. -++...| .+.++....+|...+... ++ ...|++
T Consensus 258 ~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~~-----~~~~a~l-~iirg~~t~~dv~~v~~~---~~---~~~fSf 325 (579)
T KOG1116|consen 258 ERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGPD-----LPLLATL-LIIRGRLTPMDVSVVEYA---GK---DRHFSF 325 (579)
T ss_pred cccchhhHhcCceeEeecCCccHHHHHhhcccCcc-----cchHHHH-HHHccCCCchheeehhhc---cC---cceEEE
Confidence 7532 2468999999999999999999976641 1234444 455677788887766554 22 237888
Q ss_pred eeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECC---E--------------
Q 004734 514 NYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDG---T-------------- 576 (732)
Q Consensus 514 NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG---~-------------- 576 (732)
+..++||.|+|-.+.++.|+ +|.+.|.+.++..++.- ..++-+++... +
T Consensus 326 Ls~~wGlIADiDI~SEk~R~----------mG~~Rf~lg~~~rl~~l----r~Y~gri~ylp~~~k~~~~~~~~~~~~~~ 391 (579)
T KOG1116|consen 326 LSAAWGLIADVDIESEKYRW----------MGPARFTLGAFLRLIQL----RKYKGRIEYLPAKGKSAEPLPAHELEAAD 391 (579)
T ss_pred EeeeeeeEEecccchHHHHh----------hcchhhhHHHHHHHHhc----cCCCceEEEecccccccCcccchhhcccc
Confidence 99999999999988766554 67788888777777642 22222222211 0
Q ss_pred -----------------------------------------------------------EEEecC-CeeEE-EEeccCcc
Q 004734 577 -----------------------------------------------------------EIEVPE-DAEGV-LVANIGSY 595 (732)
Q Consensus 577 -----------------------------------------------------------~i~lp~-~~~~l-~v~Nip~~ 595 (732)
....++ ++..+ .+.+ .|.
T Consensus 392 ~~~~~~~~a~~~~s~~~~~~~~~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~-sy~ 470 (579)
T KOG1116|consen 392 SEGCLSTHADTEPSEYPRLSVPKMSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILL-SYL 470 (579)
T ss_pred ccccccccccccccccccccccccCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhh-hhc
Confidence 001111 12221 1222 356
Q ss_pred cCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccch---hhhhc---------cCCceEEeEeeEEEEEeC-CCccE
Q 004734 596 MGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLG---KLQVG---------LSRARRLAQGQSIRIQLF-APLPV 662 (732)
Q Consensus 596 gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~---~l~~g---------l~~~vrl~q~~~I~I~~~-~~~pv 662 (732)
++.+.+.|.+ .++||.++++.+....... .+... ..+.+.+..++.++++.. .+..+
T Consensus 471 ~~d~~~~P~A----------~~~dg~I~lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~~~~~~ 540 (579)
T KOG1116|consen 471 GADMKFAPAA----------RPDDGLIHLVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVTPSGYF 540 (579)
T ss_pred cCCccccccc----------ccCCCeEEEEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEecCCceE
Confidence 6666666665 6899999999988652211 11111 234567788888988775 44899
Q ss_pred EEcCCCCCCCceEEEEEecceeEEEec
Q 004734 663 QIDGEPWFQQPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 663 qiDGE~~~~~P~~I~I~~~~~~~ml~~ 689 (732)
++|||.+...|..+++.|+....+..+
T Consensus 541 ~vDGE~~~~ep~q~~v~p~~i~~~s~~ 567 (579)
T KOG1116|consen 541 AVDGELVPLEPLQVQVLPGLILTLSGR 567 (579)
T ss_pred EecccEeeccceeEEecccceeEEecc
Confidence 999999999999999999999888874
No 19
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.90 E-value=6.7e-24 Score=207.50 Aligned_cols=158 Identities=40% Similarity=0.703 Sum_probs=133.4
Q ss_pred eeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEe
Q 004734 511 FLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVA 590 (732)
Q Consensus 511 ~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~ 590 (732)
+|+|++|+||||+|+..++..|+++|.+++++++|+++|+..+++.++...++..+++++|++||++...+..+..++++
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~~~~~~~~v~v~ 80 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDLPNSLEGIAVL 80 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEeccCCCCccEEEEE
Confidence 48999999999999999999998888888888899999999999999754444455789999999988764347899999
Q ss_pred ccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEE--EEeCCCccEEEcCCC
Q 004734 591 NIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIR--IQLFAPLPVQIDGEP 668 (732)
Q Consensus 591 Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~--I~~~~~~pvqiDGE~ 668 (732)
|+++||||+.+||.++..+..|..++++||+|||+.+.+..++..+.....+.+++.|+++++ |++++++++|+|||+
T Consensus 81 N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~~~~~~~~~~~~~~~~~~v~~~~~~~v~i~i~~~~~~~~q~DGE~ 160 (160)
T smart00045 81 NIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVGLTGAMHMAQIRQVGLAGRRIAQCSEVRITIKTSKTIPMQVDGEP 160 (160)
T ss_pred CCCccccCcccccCCcccccccCCCCCCCceEEEEEEcCchhhhhhhhccCCCceeecCceEEEEEecCCceeeecCCCC
Confidence 999999999999876555556666799999999999998777665543345678999999999 667889999999996
No 20
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.85 E-value=5.4e-21 Score=179.26 Aligned_cols=101 Identities=60% Similarity=1.087 Sum_probs=83.7
Q ss_pred EEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCC-CCeEEEEcCchhHHHHHHHHHhcCCCC-CC
Q 004734 367 LVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVP-HFRVLVCGGDGTVGWVLNAIDKQNFVS-PP 444 (732)
Q Consensus 367 lV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~-~~~Ivv~GGDGTV~~VLn~l~~~~~~~-~p 444 (732)
+||+||+||++++.++++.++..+.+.+++.... ...+++.+++++.. ++.|+++|||||+++|+|++.+..... .+
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~-~~~~~~~~~~~~~~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~ 79 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTK-KGPAAALVIFRDLPKFDRVLVCGGDGTVGWVLNALDKRELPLPEP 79 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEec-CChHHHHHHHhhcCcCCEEEEEccccHHHHHHHHHHhcccccCCC
Confidence 5899999999999999999999999888765543 55667777777764 468999999999999999998654221 28
Q ss_pred cEEEeeCCCcchhhHhhcCCCCCC
Q 004734 445 PVAILPAGTGNDLARVLFWGGGLS 468 (732)
Q Consensus 445 pvaILPlGTGNDlAR~Lgwg~g~~ 468 (732)
||||||+||||||||+|||+....
T Consensus 80 plgiiP~GTgNdfar~lgi~~~~~ 103 (124)
T smart00046 80 PVAVLPLGTGNDLARSLGWGGGYD 103 (124)
T ss_pred cEEEeCCCChhHHHHHcCCCCCcc
Confidence 999999999999999999986543
No 21
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.81 E-value=9.4e-20 Score=171.96 Aligned_cols=99 Identities=34% Similarity=0.460 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCc-EEEEeccCCccHHHHHhh--hC-CC-CeEEEEcCchhHHHHHHHHHhcC
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQ-VVELSSTQGPEVGLFLFR--KV-PH-FRVLVCGGDGTVGWVLNAIDKQN 439 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~q-V~dl~~t~~p~~al~l~r--~~-~~-~~Ivv~GGDGTV~~VLn~l~~~~ 439 (732)
+++||+||+||++++. +++++.+|.... -+++..++..+++.++.+ +. .. +.|+++||||||++|++++.+..
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~ 78 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSD 78 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTST
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcC
Confidence 5899999999999988 345544443321 133333444555444443 33 33 79999999999999999998876
Q ss_pred CCCCCcEEEeeCCCcchhhHhhcCCC
Q 004734 440 FVSPPPVAILPAGTGNDLARVLFWGG 465 (732)
Q Consensus 440 ~~~~ppvaILPlGTGNDlAR~Lgwg~ 465 (732)
....|||||||+||||||||+||++.
T Consensus 79 ~~~~~~l~iiP~GT~N~~ar~lg~~~ 104 (130)
T PF00781_consen 79 REDKPPLGIIPAGTGNDFARSLGIPS 104 (130)
T ss_dssp SSS--EEEEEE-SSS-HHHHHTT--S
T ss_pred CCccceEEEecCCChhHHHHHcCCCC
Confidence 54578999999999999999999985
No 22
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.81 E-value=4.7e-21 Score=203.94 Aligned_cols=119 Identities=18% Similarity=0.336 Sum_probs=105.0
Q ss_pred cccCccCCCCCeeEeeeeCCCCCccccccCCCCC--CCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceec-
Q 004734 70 KTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMS--PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMI- 146 (732)
Q Consensus 70 ~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~--~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~- 146 (732)
+++..+.+..|.|.+.+|. |||||++|.++|| |+||+ +|++|.++||++|+.++...|.+....
T Consensus 36 rqKnvhevk~HkF~aRFFK--qPTfCsHCkDFiwGfgKQGf-----------QCqvC~fvvHkrChefVtF~CPGadkg~ 102 (683)
T KOG0696|consen 36 RQKNVHEVKSHKFIARFFK--QPTFCSHCKDFIWGFGKQGF-----------QCQVCCFVVHKRCHEFVTFSCPGADKGP 102 (683)
T ss_pred hhcchhhhccceeeehhcc--CCchhhhhhhheeccccCce-----------eeeEEeehhhhhhcceEEEECCCCCCCC
Confidence 5566778899999999998 9999999999999 58885 999999999999999999999986532
Q ss_pred --CccceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 147 --GFEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 147 --~~~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
......|.|... .|.+++||++||..+++...| |++|.-|.++||.+|..++++.
T Consensus 103 dtDdpr~kHkf~~~------tYssPTFCDhCGsLLyGl~HQ---GmKC~~C~mNVH~rCv~nVPsl 159 (683)
T KOG0696|consen 103 DTDDPRSKHKFKIH------TYSSPTFCDHCGSLLYGLIHQ---GMKCDTCDMNVHHRCVENVPSL 159 (683)
T ss_pred CCCCcccccceeee------ecCCCchhhhHHHHHHHHHhc---ccccccccchHHHHHhhcCCcc
Confidence 223478999664 899999999999999998877 8999999999999999998876
No 23
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.79 E-value=5.7e-19 Score=187.16 Aligned_cols=298 Identities=17% Similarity=0.192 Sum_probs=207.7
Q ss_pred ccceeccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhCC------CCeEEEEcC
Q 004734 352 QKYELIDMPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVP------HFRVLVCGG 424 (732)
Q Consensus 352 ~~~~~~~~p~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~~------~~~Ivv~GG 424 (732)
..|-++......+.++|||||.+|+++|.++++.+..++--..| +++..|+..++|.+.+.+.+ +|-||++||
T Consensus 147 l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGG 226 (516)
T KOG1115|consen 147 LNYSLIKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGG 226 (516)
T ss_pred HHHHHHHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecC
Confidence 34445555566789999999999999999999999888865556 77777899999999887764 578999999
Q ss_pred chhHHHHHHHHHhc-------CC--------CCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhh
Q 004734 425 DGTVGWVLNAIDKQ-------NF--------VSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVT 489 (732)
Q Consensus 425 DGTV~~VLn~l~~~-------~~--------~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~ 489 (732)
||-.||+|+++.-. +. .+.|.+||||.|+.|.+.-+.. |. .|+ +..+| .|.-+...
T Consensus 227 DG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~-gt----~D~---~TSAl-HI~lG~~l 297 (516)
T KOG1115|consen 227 DGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT-GT----RDP---VTSAL-HIILGRKL 297 (516)
T ss_pred chhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec-cC----Ccc---cccee-eeEeccce
Confidence 99999999998532 11 2457899999999999877764 11 122 22233 45556777
Q ss_pred hccceEEEEEccCCcccCCCceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEE
Q 004734 490 ILDRWKVAILNQQGKLLEPPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQV 569 (732)
Q Consensus 490 ~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v 569 (732)
.+|...+.-. ++ -.||-.|.+|.||.++|..+.+++|+ +|...|-++|++.+++.. .++-
T Consensus 298 ~vDVctVht~---~k---LiRysaSa~gYGFyGDvl~dSEKYRW----------mGp~RYDfsglKtflkH~----~Yeg 357 (516)
T KOG1115|consen 298 FVDVCTVHTI---EK---LIRYSASAAGYGFYGDVLSDSEKYRW----------MGPKRYDFSGLKTFLKHR----SYEG 357 (516)
T ss_pred eeeeeeeeec---ch---heeeehhhhcccccchhhhhhhhhhc----------cCchhhhhHHHHHHHhcc----ccce
Confidence 8887766532 22 35788899999999999999877665 677889999999998643 3333
Q ss_pred EEEE---------------------CCEEEE-ecCCeeEEEEeccCcccCCc--ccCCCCCCCCCCCCCcccCCCeEEEE
Q 004734 570 RVVV---------------------DGTEIE-VPEDAEGVLVANIGSYMGGV--DLWQNEDENYDNFDPQSMHDKVLEVV 625 (732)
Q Consensus 570 ~v~~---------------------DG~~i~-lp~~~~~l~v~Nip~~gGG~--~l~~~a~~~~~~f~~~~~~DGlLeVv 625 (732)
+|.. +.+..+ .-.....|.+.|+|....-. .+.|. ..++||-++++
T Consensus 358 eVsFlpa~sen~~qe~~~~g~~~~~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrGLaP~----------T~LndGs~dLi 427 (516)
T KOG1115|consen 358 EVSFLPAESENPCQEPCPSGASLHTRSKTWQRNTGRFLKVLCRAIPCICNSKPRGLAPS----------TTLNDGSEDLI 427 (516)
T ss_pred EEEecccccCCchhccccccCCcccCcchhhhhhhheeeeeEeeccccccCCCCCcCCc----------cccCCCcccee
Confidence 3321 111111 11235677778888753211 02222 27899999999
Q ss_pred EEcCcccchhhhhc----------cCCceEEeEeeEEEEEeC-------CCccEEEcCCCCCCC-ceEEEEEecceeEEE
Q 004734 626 SISGTWHLGKLQVG----------LSRARRLAQGQSIRIQLF-------APLPVQIDGEPWFQQ-PCTLAISHHGQAFML 687 (732)
Q Consensus 626 ~l~~~~~l~~l~~g----------l~~~vrl~q~~~I~I~~~-------~~~pvqiDGE~~~~~-P~~I~I~~~~~~~ml 687 (732)
.++...++-.++.. .-..+..+.+..+..... .....++|||...+. |+.|++.|+-..++-
T Consensus 428 l~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~~d~~~~d~~eWN~DGeile~p~~lh~rlHpqLIslfg 507 (516)
T KOG1115|consen 428 LCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLIKDCSRPDYLEWNLDGEILEQPKPLHFRLHPQLISLFG 507 (516)
T ss_pred eeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEeecCCCCCCCcceeccCcchhcCCcceEEEechhhHhHhc
Confidence 99877654443321 112355566677776652 345689999999985 999999988776654
Q ss_pred e
Q 004734 688 K 688 (732)
Q Consensus 688 ~ 688 (732)
.
T Consensus 508 r 508 (516)
T KOG1115|consen 508 R 508 (516)
T ss_pred c
Confidence 3
No 24
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=99.49 E-value=2.1e-15 Score=165.12 Aligned_cols=116 Identities=24% Similarity=0.462 Sum_probs=99.9
Q ss_pred CccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccceec----
Q 004734 73 HKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMI---- 146 (732)
Q Consensus 73 ~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~---- 146 (732)
+.+.+..|.....+.. .|+||.+|.|+||| +||+ +|..||...|++|+.+++++|.++.+.
T Consensus 139 ed~~i~PH~l~vhSY~--~PtFCD~CGEmL~GLvrQGl-----------KC~gCglNyHKRCa~kipNNCsG~r~rr~sa 205 (888)
T KOG4236|consen 139 EDFQIRPHTLFVHSYK--APTFCDFCGEMLFGLVRQGL-----------KCEGCGLNYHKRCAFKIPNNCSGVRKRRLSA 205 (888)
T ss_pred cceeeecceeeeeccc--CchHHHHHHHHHHHHHHccc-----------cccCCCCcHhhhhhhcCCCCCCcccccCCCC
Confidence 4556788999887765 89999999999997 8997 999999999999999999999764210
Q ss_pred ------C-------c-------------c------------------------------ceeeeeEeeeecccCCCCCCC
Q 004734 147 ------G-------F-------------E------------------------------HVIHQWSVRWTEITDQPSEAS 170 (732)
Q Consensus 147 ------~-------~-------------~------------------------------~~~H~W~~~~~~~~~n~~~~~ 170 (732)
. . . .+||.|.+. +|..++
T Consensus 206 ~~l~~~~s~~l~~s~~~p~~p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~vH------SY~rpT 279 (888)
T KOG4236|consen 206 VSLQPSRSNRLNLSPSSPLEPLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIVH------SYTRPT 279 (888)
T ss_pred CCCCCCCccccccCCCCCCCccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEEe------eccCch
Confidence 0 0 0 189999775 899999
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
.|.+|++.+-+.|+| |++|..|+.++|.+|...++++
T Consensus 280 VCq~CkkLLkGL~rQ---GlqCkDCk~NcHkrCa~~v~~d 316 (888)
T KOG4236|consen 280 VCQYCKKLLKGLFRQ---GLQCKDCKFNCHKRCAMKVPND 316 (888)
T ss_pred HHHHHHHHHHHHHhc---CcccccCCcchhhhhhhhcccc
Confidence 999999999999987 8999999999999999999887
No 25
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-14 Score=164.07 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=101.4
Q ss_pred ccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCcccee-cC
Q 004734 71 TRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSM-IG 147 (732)
Q Consensus 71 ~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~-~~ 147 (732)
.++++.+.+|.|.++++. ||++|++|.+++|+ +||| +|++|..++|++|+.++.+.|..... ..
T Consensus 150 ~~kVhei~gH~F~aT~l~--Qpt~Cs~C~kFi~gL~kqGy-----------QCqvC~~vvHKkCh~kvv~~C~~~~~~n~ 216 (694)
T KOG0694|consen 150 QSKVHEIDGHKFGATSLR--QPTFCSWCQKFIWGLRKQGY-----------QCQVCWRVVHKKCHVKVVTLCDFLDNLNS 216 (694)
T ss_pred cceeEEeeCcEEEEeecc--CcchhhhhhhheeccCCCce-----------EEeeeeehHhhhhHHHHHHhccCcCccCc
Confidence 345578899999999997 99999999999997 9997 99999999999999999999887653 11
Q ss_pred ---------ccceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 148 ---------FEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 148 ---------~~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
.-.+||+++.. |+..++||++|++.++....+ ++.|.-|.++||++|..+++..
T Consensus 217 e~q~~~~~~~~~~Phrf~~~------~~q~ptFc~hCGs~L~r~~qq---GlkCs~Cg~n~H~~c~~~va~~ 279 (694)
T KOG0694|consen 217 EPQGFLFEFTFRNPHRFVKL------NRQRPTFCDHCGSVLYRLRQQ---GLKCSTCGRNVHNRCVENLAPN 279 (694)
T ss_pred CCccccccccccCCCcchhh------hccCccHHHhcchhhhhhccc---CeeehhhhccccHHHHHhcccC
Confidence 11367999775 888999999999999876554 8999999999999999998765
No 26
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.44 E-value=3.9e-14 Score=160.46 Aligned_cols=131 Identities=29% Similarity=0.572 Sum_probs=105.0
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCC-----CCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceec---Ccc
Q 004734 78 APHTWVLESVSRGKNLNCCVCLKSMS-----PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMI---GFE 149 (732)
Q Consensus 78 ~~H~w~~~~~~~~~p~~C~vC~~~l~-----~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~---~~~ 149 (732)
..|.|...++. +|+||++|.++.. .+|| ++|+.|++.||..|+..+.+.|.++... ...
T Consensus 97 ~~~~~~~~~~~--~~~~c~~c~~~c~~~~~~~~~g-----------~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~ 163 (634)
T KOG1169|consen 97 GDHVWRPKHLW--KPAYCFVCPKSCGSCGVGIKQG-----------LCCDWCGRTVHERCVRRADPECQCKCDLGRLRKI 163 (634)
T ss_pred CceeccCCCCC--CCceEEeccccccchhhcccCc-----------eeeccccchHHHHHHhhcCcccccccccccccce
Confidence 57999999887 9999999999873 2455 5999999999999999999887666432 234
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCCCCCCCCCCCCCCeeeCCCc
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDLGPFRRLILSPLY 229 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r~~IlpP~~ 229 (732)
.+.|+|+++ ......|..|.+.+...- +.++++|.||++.+|++|......+ ||+|+|+++|+||+.
T Consensus 164 v~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~c~~~~~~~h~~~~~~~~~~----~~~~~~~~~i~p~~~ 230 (634)
T KOG1169|consen 164 VLDHPWVKG-------NAGEAKCDQCLKSVKADQ--GLTGPRCGWCQIRVHDKCKSELSQE----CDLGELKDHILPPST 230 (634)
T ss_pred eecCccccc-------ccCCccchhhhccccccc--cccccccceeeeeeecchHHHHhhh----ccChhhhhccCCcee
Confidence 678888885 344678888888754321 1258999999999999999877665 999999999999999
Q ss_pred eeecc
Q 004734 230 VKELN 234 (732)
Q Consensus 230 i~~~~ 234 (732)
+....
T Consensus 231 ~~~~~ 235 (634)
T KOG1169|consen 231 LRPAR 235 (634)
T ss_pred eeccc
Confidence 87544
No 27
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.12 E-value=3.7e-10 Score=120.56 Aligned_cols=170 Identities=21% Similarity=0.316 Sum_probs=110.3
Q ss_pred HhhhccceeccCCCC--CCcEEEEEcCCCCCCCh-hhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhCC--CCeEEE
Q 004734 348 LQLKQKYELIDMPPD--ARPLLVFINKKSGAQRG-DSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVP--HFRVLV 421 (732)
Q Consensus 348 ~~~~~~~~~~~~p~~--~~pllV~vNPkSG~~~g-~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~~--~~~Ivv 421 (732)
....++|.+.++|+. .++++||+||.+..+.. ..+......+|+-+.+ +++-+|...++|..++..++ .|.|+|
T Consensus 43 a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t~~Dii~V 122 (535)
T KOG4435|consen 43 AKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDTQEDIIYV 122 (535)
T ss_pred HHHHHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhccCCCeEEE
Confidence 344577877788864 57899999998865432 2234555666665554 57777888889888887764 589999
Q ss_pred EcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhh---hhccceEEEE
Q 004734 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAV---TILDRWKVAI 498 (732)
Q Consensus 422 ~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~---~~lDrw~v~i 498 (732)
+|||||+++|+.|+.+.. ....||+++|+|--|--..+.- +.-+++.|....+.+.+..+.+... ..+| +
T Consensus 123 aGGDGT~~eVVTGi~Rrr-~~~~pv~~~P~G~~~l~~~s~l-~~vfe~~d~V~h~~~a~~avikde~ksv~~fd-----v 195 (535)
T KOG4435|consen 123 AGGDGTIGEVVTGIFRRR-KAQLPVGFYPGGYDNLWLKSML-PSVFENSDDVRHACEAAMAVIKDEKKSVYAFD-----V 195 (535)
T ss_pred ecCCCcHHHhhHHHHhcc-cccCceeeccCccchHhhhhhc-hhhhccchHHHHHHHHHHHHhcccccceEEEE-----e
Confidence 999999999999999864 4678999999999987555543 2223332322333333333333222 2222 2
Q ss_pred EccCCcccCCCceeeeeeccchhHHHHH
Q 004734 499 LNQQGKLLEPPKFLNNYLGVGCDAKVAL 526 (732)
Q Consensus 499 ~~~~g~~~~~~~~f~NyfsIG~DA~V~~ 526 (732)
.. .|. ....-|-+|-+++|.--+|-.
T Consensus 196 ~~-~gs-~l~P~fgl~glswG~frdi~~ 221 (535)
T KOG4435|consen 196 TT-EGS-TLAPEFGLGGLSWGWFRDIED 221 (535)
T ss_pred cc-CCC-ccccccccCccchhhhhhhhh
Confidence 22 233 234456778888888666543
No 28
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.74 E-value=9.3e-09 Score=81.81 Aligned_cols=49 Identities=20% Similarity=0.507 Sum_probs=40.7
Q ss_pred eeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
|+|+.. ++..+++|++|++.+++... +|++|.||++.+|.+|..+++..
T Consensus 1 H~f~~~------~~~~~~~C~~C~~~i~g~~~---~g~~C~~C~~~~H~~C~~~~~~~ 49 (53)
T PF00130_consen 1 HHFVPT------TFSKPTYCDVCGKFIWGLGK---QGYRCSWCGLVCHKKCLSKVPPS 49 (53)
T ss_dssp -EEEEE------ESSSTEB-TTSSSBECSSSS---CEEEETTTT-EEETTGGCTSSSB
T ss_pred CeEEEc------cCCCCCCCcccCcccCCCCC---CeEEECCCCChHhhhhhhhcCCC
Confidence 899886 78889999999999987544 49999999999999999999876
No 29
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=98.67 E-value=1.1e-08 Score=81.42 Aligned_cols=50 Identities=36% Similarity=0.642 Sum_probs=42.1
Q ss_pred CeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCcc
Q 004734 80 HTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (732)
Q Consensus 80 H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 142 (732)
|.|....+. +|++|.+|.+.||+ +|| ++|+.|++++|++|..+++..|.+
T Consensus 1 H~f~~~~~~--~~~~C~~C~~~i~g~~~~g-----------~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTFS--KPTYCDVCGKFIWGLGKQG-----------YRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEESS--STEB-TTSSSBECSSSSCE-----------EEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccCC--CCCCCcccCcccCCCCCCe-----------EEECCCCChHhhhhhhhcCCCCCC
Confidence 899999886 99999999999974 565 499999999999999999998864
No 30
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.61 E-value=1.5e-08 Score=79.26 Aligned_cols=48 Identities=38% Similarity=0.620 Sum_probs=43.6
Q ss_pred CeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCC
Q 004734 80 HTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDC 140 (732)
Q Consensus 80 H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~C 140 (732)
|.|....+. +|++|++|.+.||+ +||| +|+.|++++|++|..++.+.|
T Consensus 1 H~f~~~~~~--~~~~C~~C~~~i~~~~~~~~-----------~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 1 HRFVRKSFF--KPTFCDVCRKSIWGLFKQGL-----------RCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CccEEeeCC--CCCChhhcchhhhcccccee-----------EcCCCCCchhhhhhccCCCCC
Confidence 889998776 89999999999996 5775 999999999999999998877
No 31
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.54 E-value=1.9e-06 Score=91.85 Aligned_cols=246 Identities=16% Similarity=0.127 Sum_probs=132.3
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEec--cCCccHHHH----HhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSS--TQGPEVGLF----LFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~--t~~p~~al~----l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++.+|+|+.. ....++++++...|....+ +.+.. +....++.. -..+...+.|++.|||||+.++++ +..
T Consensus 2 ~v~iv~~~~k--~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~~~ 78 (277)
T PRK03708 2 RFGIVARRDK--EEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-KTK 78 (277)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-hcC
Confidence 4778888744 4566788888887755432 22221 111111100 111113578999999999999999 654
Q ss_pred cCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeec
Q 004734 438 QNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLG 517 (732)
Q Consensus 438 ~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~Nyfs 517 (732)
..+||..+|.||. +|...+.. +.+...|.++.++.-..-.|-.+++.- .|+ ...+.+|-+.
T Consensus 79 ----~~~pi~gIn~G~l-GFl~~~~~----------~~~~~~l~~i~~g~~~~~~r~~l~~~~-~~~---~~~~alNdv~ 139 (277)
T PRK03708 79 ----KDIPILGINMGTL-GFLTEVEP----------EETFFALSRLLEGDYFIDERIKLRVYI-NGE---NVPDALNEVV 139 (277)
T ss_pred ----CCCeEEEEeCCCC-CccccCCH----------HHHHHHHHHHHcCCceEEEeEEEEEEE-CCe---EeEEEeeeEE
Confidence 4689999999998 77777642 346677777776643222222222211 121 0122333211
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEec-cCccc
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVAN-IGSYM 596 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~N-ip~~g 596 (732)
+. |. ....-..+++.+||+.+.- ...-+|+|.. ..|.+
T Consensus 140 v~------------~~----------------------------~~~~~~~~~v~idg~~~~~-~~gDGvIvsTptGSTA 178 (277)
T PRK03708 140 IL------------TG----------------------------IPGKIIHLKYYVDGELADE-VRADGLIISTPTGSTA 178 (277)
T ss_pred Ee------------cC----------------------------CCCcEEEEEEEECCEEEEE-EecCEEEEeCCCchHH
Confidence 10 00 0011236788999998762 2466777754 22211
Q ss_pred CCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeC---CCccEEEcCCCCCC--
Q 004734 597 GGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLF---APLPVQIDGEPWFQ-- 671 (732)
Q Consensus 597 GG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~---~~~pvqiDGE~~~~-- 671 (732)
.++.... -+-+..++++.++...-+. ...+++-+.....|+|+.. .+..+.+||+....
T Consensus 179 --Y~lSaGG----------pIv~p~~~~~~vtPi~p~~----l~~rplV~~~~~~i~l~~~~~~~~~~l~~DG~~~~~l~ 242 (277)
T PRK03708 179 --YAMSAGG----------PFVDPRLDAILIAPLCPFK----LSSRPMVVPSSSRIDVKLLRTGREIILVIDGQYYEELP 242 (277)
T ss_pred --HHhhCCC----------cccCCCCCeEEEEeccccc----CCCCCEEECCCCEEEEEEecCCCcEEEEECCCeeEecC
Confidence 1222111 1122234566666432111 1125555666667777753 35678999997532
Q ss_pred --CceEEEEEecceeEEEec
Q 004734 672 --QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 672 --~P~~I~I~~~~~~~ml~~ 689 (732)
..++|+..++...++...
T Consensus 243 ~~~~v~i~~s~~~~~~~~~~ 262 (277)
T PRK03708 243 PDTEITIKKSPRKTKFVRFS 262 (277)
T ss_pred CCCEEEEEECCCeEEEEecC
Confidence 346666666666666543
No 32
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.48 E-value=6.6e-08 Score=75.04 Aligned_cols=48 Identities=40% Similarity=0.782 Sum_probs=42.1
Q ss_pred CeeEeeeeCCCCCccccccCCCCCCC-CCCCCcccCCcCcccccccccccCccchhhhcCCC
Q 004734 80 HTWVLESVSRGKNLNCCVCLKSMSPS-QTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDC 140 (732)
Q Consensus 80 H~w~~~~~~~~~p~~C~vC~~~l~~~-qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~C 140 (732)
|.|....+. +|+||++|.+.||+. ||+ +|..|++++|++|+.++...|
T Consensus 1 H~~~~~~~~--~~~~C~~C~~~i~~~~~~~-----------~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 1 HHFVERTFK--KPTKCCVCRKSIWGSFQGL-----------RCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CceEEeccC--CCCCccccccccCcCCCCc-----------CCCCCCchHHHHHHhhcCCCC
Confidence 788888765 899999999999964 464 999999999999999998876
No 33
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=98.40 E-value=1.6e-07 Score=73.37 Aligned_cols=49 Identities=22% Similarity=0.602 Sum_probs=41.5
Q ss_pred eeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
|+|... ++..+++|.+|++.+++... ++++|.||++.+|.+|..+++..
T Consensus 1 H~f~~~------~~~~~~~C~~C~~~i~~~~~---~~~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T cd00029 1 HRFVRK------SFFKPTFCDVCRKSIWGLFK---QGLRCSWCKVKCHKKCADKVPPS 49 (50)
T ss_pred CccEEe------eCCCCCChhhcchhhhcccc---ceeEcCCCCCchhhhhhccCCCC
Confidence 788775 66778999999999987422 59999999999999999998754
No 34
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.38 E-value=2.6e-05 Score=84.42 Aligned_cols=255 Identities=12% Similarity=0.144 Sum_probs=131.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEeccCCccHHHH-HhhhC--CCCeEEEEcCchhHHHHHHHHHh
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVGLF-LFRKV--PHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~t~~p~~al~-l~r~~--~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++++|+|| |.....+++.++...|... +++ +..+.....+.. +.... ..+.|+++|||||+..+++.+..
T Consensus 3 ~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~-v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~~ 79 (305)
T PRK02645 3 LKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVL-MGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLAP 79 (305)
T ss_pred cCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEE-EecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhcc
Confidence 5789999999 4445556777777766533 332 222211111111 11222 35789999999999999999864
Q ss_pred cCCCCCCcEEEeeC-CCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEcc-CCcc----cCCCce
Q 004734 438 QNFVSPPPVAILPA-GTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ-QGKL----LEPPKF 511 (732)
Q Consensus 438 ~~~~~~ppvaILPl-GTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~-~g~~----~~~~~~ 511 (732)
..+||..|.+ |+-.=|+..-.. ... .++|+++.++.-..-.|..+++.-. .|+. .....+
T Consensus 80 ----~~~pv~gin~~G~lGFL~~~~~~---------~~~-~~~l~~i~~g~~~i~~r~~L~~~~~~~~~~~~~~~~~~~~ 145 (305)
T PRK02645 80 ----HDIPILSVNVGGHLGFLTHPRDL---------LQD-ESVWDRLQEDRYAIERRMMLQARVFEGDRSNEEPVSESYY 145 (305)
T ss_pred ----CCCCEEEEecCCcceEecCchhh---------cch-HHHHHHHHcCCceEEEeeEEEEEEEeCCcccccccccceE
Confidence 4678888888 765444422100 012 5677888777655445544443311 1110 001123
Q ss_pred eeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEec
Q 004734 512 LNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVAN 591 (732)
Q Consensus 512 f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~N 591 (732)
.+|=+.|. |.. +. +.....++|++||+.+.- -..-+|+|..
T Consensus 146 AlNev~i~------------~~~-~~-------------------------~~~~~~~~v~id~~~~~~-~~gDGlIVsT 186 (305)
T PRK02645 146 ALNDFYLK------------PAS-ED-------------------------RSPTCILELEIDGEVVDQ-YQGDGLIVST 186 (305)
T ss_pred EEeeEEEe------------ccC-cc-------------------------cccceEEEEEECCEEEEE-EecCEEEEec
Confidence 44433221 000 00 011235788999988752 2466777764
Q ss_pred cCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeCC----CccEEEcCC
Q 004734 592 IGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLFA----PLPVQIDGE 667 (732)
Q Consensus 592 ip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~~----~~pvqiDGE 667 (732)
|.-.-+..+.... -+-+.-++++.++...-+. ...+++-+.....|+|+... +..+.+||.
T Consensus 187 -PtGSTAYslSAGG----------PIv~P~~~~~~vtPi~ph~----l~~rplVlp~~~~i~i~~~~~~~~~~~l~~DG~ 251 (305)
T PRK02645 187 -PTGSTAYTMAAGG----------PILHPGIDAIIVTPICPMS----LSSRPIVIPPGSRVVIWPLGDYDLNIKLWKDGV 251 (305)
T ss_pred -CCChhhhhhhcCC----------cccCCCCCeEEEEecCccc----ccCCCEEECCCCEEEEEEcCCCCCcEEEEECCC
Confidence 2211112222111 0112234555555432111 11245666666778887542 345899999
Q ss_pred CCCC----CceEEEEEecceeEEEe
Q 004734 668 PWFQ----QPCTLAISHHGQAFMLK 688 (732)
Q Consensus 668 ~~~~----~P~~I~I~~~~~~~ml~ 688 (732)
.... ..++|+.......++..
T Consensus 252 ~~~~l~~~~~i~i~~s~~~~~~v~~ 276 (305)
T PRK02645 252 LATSIWPGQRCVIQKARHPAKFIIL 276 (305)
T ss_pred cceecCCCCEEEEEECCCceEEEEe
Confidence 7432 23555555555555543
No 35
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.26 E-value=5.2e-07 Score=69.97 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=40.5
Q ss_pred eeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
|+|... ++..+++|.+|++.+++.+ ++++|.||++.+|.+|..+++..
T Consensus 1 H~~~~~------~~~~~~~C~~C~~~i~~~~----~~~~C~~C~~~~H~~C~~~v~~~ 48 (49)
T smart00109 1 HHFVER------TFKKPTKCCVCRKSIWGSF----QGLRCSWCKVKCHKKCAEKVPQP 48 (49)
T ss_pred CceEEe------ccCCCCCccccccccCcCC----CCcCCCCCCchHHHHHHhhcCCC
Confidence 778765 5667899999999998754 38999999999999999998754
No 36
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.21 E-value=6.4e-05 Score=80.80 Aligned_cols=242 Identities=13% Similarity=0.138 Sum_probs=129.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCc--EEEEeccCCccHHHH-----H--hhhC--CCCeEEEEcCchhHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ--VVELSSTQGPEVGLF-----L--FRKV--PHFRVLVCGGDGTVGWV 431 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~q--V~dl~~t~~p~~al~-----l--~r~~--~~~~Ivv~GGDGTV~~V 431 (732)
++.+++|.|+.. ....++.+++..+|.... ++ +... ....+. . ..+. ..+.|++.|||||+-.+
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~-~~~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L~a 79 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVI-VEQQ--IAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNMLGA 79 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEE-Eecc--hhhhcCcccccccchhhcCCCCCEEEEECCcHHHHHH
Confidence 567999999755 345667788887775443 33 2110 000000 0 0122 24789999999999999
Q ss_pred HHHHHhcCCCCCCcEEEeeCCCcc-hhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEcc-CCcccCCC
Q 004734 432 LNAIDKQNFVSPPPVAILPAGTGN-DLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ-QGKLLEPP 509 (732)
Q Consensus 432 Ln~l~~~~~~~~ppvaILPlGTGN-DlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~-~g~~~~~~ 509 (732)
+..+... .+.|||.++|| +|...+.. +++.+.|+++.++.-..-+|..+++.-. .++ ....
T Consensus 80 a~~~~~~------~~Pilgin~G~lGFl~~~~~----------~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~~-~~~~ 142 (292)
T PRK03378 80 ARVLARY------DIKVIGINRGNLGFLTDLDP----------DNALQQLSDVLEGHYISEKRFLLEAQVCRHGQ-QKRI 142 (292)
T ss_pred HHHhcCC------CCeEEEEECCCCCcccccCH----------HHHHHHHHHHHcCCceEEEEEEEEEEEEeCCc-eEEe
Confidence 9887642 25578888888 66666541 3466777777666433323333332210 011 0011
Q ss_pred ceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEE
Q 004734 510 KFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLV 589 (732)
Q Consensus 510 ~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v 589 (732)
.+.+|-+.+- |. .+. .-.++++.+||+.+.. ....+++|
T Consensus 143 ~~aLNdvvi~------------~~------------~~~----------------~~i~~~v~idg~~~~~-~~~DGlIv 181 (292)
T PRK03378 143 STAINEVVLH------------PG------------KVA----------------HMIEFEVYIDDNFAFS-QRSDGLII 181 (292)
T ss_pred EEEEEEEEEc------------cC------------CCc----------------cEEEEEEEECCEEEEE-EEccEEEE
Confidence 2344432110 00 000 1126788899987652 23556666
Q ss_pred ec--c-Ccc---cCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceEEeEeeEEEEEeC---CC
Q 004734 590 AN--I-GSY---MGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARRLAQGQSIRIQLF---AP 659 (732)
Q Consensus 590 ~N--i-p~~---gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vrl~q~~~I~I~~~---~~ 659 (732)
.- + ..| +||--+.|.. +++.++... |. ...+++-+....+|+|+.. ..
T Consensus 182 sTptGSTAYslSAGGPii~P~~-----------------~~~~itPI~Phs-----l~~rplVl~~~~~i~i~~~~~~~~ 239 (292)
T PRK03378 182 STPTGSTAYSLSAGGPILTPSL-----------------DAITLVPMFPHT-----LSARPLVIDSSSTIRLKFSPNRSD 239 (292)
T ss_pred eCCCchHHhHhhcCCceeCCCC-----------------CeEEEEeccccc-----CCCCCEEECCCCEEEEEEccCCCc
Confidence 43 2 235 6665555543 455555431 21 1124555556667777664 35
Q ss_pred ccEEEcCCCCC-C---CceEEEEEecceeEEEec
Q 004734 660 LPVQIDGEPWF-Q---QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 660 ~pvqiDGE~~~-~---~P~~I~I~~~~~~~ml~~ 689 (732)
..+.+||.... . ..++|+..+....++-++
T Consensus 240 ~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~ 273 (292)
T PRK03378 240 LEISCDSQIALPIQPGEEVLIRRSDYHLNLIHPK 273 (292)
T ss_pred EEEEECCceEEEcCCCcEEEEEECCCEEEEEEcC
Confidence 67899998642 2 235555565555555433
No 37
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.12 E-value=0.00028 Score=74.51 Aligned_cols=233 Identities=17% Similarity=0.148 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCC
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSP 443 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ 443 (732)
++.|+.+|. ..+..+++...|..... ..... + .. -.....+.|++.|||||+=.++..+ .
T Consensus 2 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~-~-~~-----~~~~~~d~vi~iGGDGT~L~a~~~~-------~ 62 (256)
T PRK14075 2 KLGIFYREE-----KEKEAKFLKEKISKEHEVVEFCE-A-SA-----SGKVTADLIIVVGGDGTVLKAAKKV-------G 62 (256)
T ss_pred EEEEEeCcc-----HHHHHHHHHHHHHHcCCeeEeec-c-cc-----cccCCCCEEEEECCcHHHHHHHHHc-------C
Confidence 355554444 44566777766654432 11111 1 11 1112347899999999997766654 2
Q ss_pred CcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccchhHH
Q 004734 444 PPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGCDAK 523 (732)
Q Consensus 444 ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG~DA~ 523 (732)
+||-=+..|+ ||.=..+ +. +++.++|.++.++.-....|..+++... + ...+.+|=+.+.
T Consensus 63 ~Pilgin~G~-------lGfl~~~---~~-~~~~~~l~~~~~g~~~~~~r~~l~~~~~-~----~~~~alNev~i~---- 122 (256)
T PRK14075 63 TPLVGFKAGR-------LGFLSSY---TL-EEIDRFLEDLKNWNFREEKRWFLKIESE-L----GNHLALNDVTLE---- 122 (256)
T ss_pred CCEEEEeCCC-------Ccccccc---CH-HHHHHHHHHHHcCCcEEEEeeEEEEEEc-C----CcEEEEEEEEEe----
Confidence 4443345554 4432211 21 4567777777776544444444444321 0 112344432221
Q ss_pred HHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEec-cCcccCCcccC
Q 004734 524 VALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVAN-IGSYMGGVDLW 602 (732)
Q Consensus 524 V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~N-ip~~gGG~~l~ 602 (732)
|. ....-..+.+.+||+.+.. ...-+|+|.. ..|.+ .++.
T Consensus 123 --------~~----------------------------~~~~~~~~~v~i~~~~~~~-~~~DG~ivsTptGSTa--Y~lS 163 (256)
T PRK14075 123 --------RD----------------------------PSQKMVEIEVSFEDHSSMW-FFADGVVISTPTGSTA--YSLS 163 (256)
T ss_pred --------cC----------------------------CCCcEEEEEEEECCEEEEE-EecCEEEEeCCCchHH--HHhh
Confidence 00 0012236788899876552 2466777754 22211 1121
Q ss_pred CCCCCCCCCCCCcccCCCeEEEEEEcCc-ccchhhhhccCCceEEeEeeEEEEEeCCCccEEEcCCCCCCC-ceEEEEEe
Q 004734 603 QNEDENYDNFDPQSMHDKVLEVVSISGT-WHLGKLQVGLSRARRLAQGQSIRIQLFAPLPVQIDGEPWFQQ-PCTLAISH 680 (732)
Q Consensus 603 ~~a~~~~~~f~~~~~~DGlLeVv~l~~~-~~l~~l~~gl~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~~~-P~~I~I~~ 680 (732)
.... +-+..++++.+... .|. ...+++-+.+.++|+|++.++..+++|||..... +++|++.+
T Consensus 164 aGGp----------iv~p~~~~l~ItPI~Ph~-----L~~rpiVlp~~~~I~I~~~~~~~l~iDGe~~~~~~~I~I~~s~ 228 (256)
T PRK14075 164 LGGP----------IILPNCEVFEITPIAPQF-----LATRSIVIPSNEKVTVESQRDINLIVDGVLVGKTNRITVKKSR 228 (256)
T ss_pred CCCc----------eeCCCCCeEEeeeeehhh-----cCCCceEcCCCCEEEEEECCceEEEECCCCcCCCcEEEEEECC
Confidence 1110 00111233333322 111 1124555667889999988889999999998765 99999999
Q ss_pred cceeEEEecC
Q 004734 681 HGQAFMLKRA 690 (732)
Q Consensus 681 ~~~~~ml~~~ 690 (732)
+...++.++.
T Consensus 229 ~~l~li~~~~ 238 (256)
T PRK14075 229 RYVRILRPKD 238 (256)
T ss_pred CEEEEEEcCC
Confidence 9999988664
No 38
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.97 E-value=0.0002 Score=77.15 Aligned_cols=251 Identities=16% Similarity=0.124 Sum_probs=127.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEeccCC---ccHHHHHh--hhC--CCCeEEEEcCchhHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQG---PEVGLFLF--RKV--PHFRVLVCGGDGTVGWVLN 433 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~t~~---p~~al~l~--r~~--~~~~Ivv~GGDGTV~~VLn 433 (732)
++.+.||+|+... ...++++++...|... +++ +..+.. ++.+.... ... ..+.|++.|||||+..+++
T Consensus 4 ~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~giev~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 80 (295)
T PRK01231 4 FRNIGLIGRLGSS--SVVETLRRLKDFLLDRGLEVI-LDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAAR 80 (295)
T ss_pred CCEEEEEecCCCH--HHHHHHHHHHHHHHHCCCEEE-EecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHH
Confidence 5679999998774 4556777777766443 332 221111 11111111 111 3578999999999999998
Q ss_pred HHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEcc-CCcccCCCcee
Q 004734 434 AIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ-QGKLLEPPKFL 512 (732)
Q Consensus 434 ~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~-~g~~~~~~~~f 512 (732)
.+.. ..+||--+.+|+ ||.=..+ + .+.+.++|.++.++.-..-.|..+++.-. .|+ .....+.
T Consensus 81 ~~~~----~~~Pvlgin~G~-------lGFl~~~---~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~-~~~~~~A 144 (295)
T PRK01231 81 ALAR----HNVPVLGINRGR-------LGFLTDI---R-PDELEFKLAEVLDGHYQEEERFLLEAEVRRGGE-VIGQGDA 144 (295)
T ss_pred HhcC----CCCCEEEEeCCc-------ccccccC---C-HHHHHHHHHHHHcCCceEEEEEEEEEEEEECCc-EEeeeeE
Confidence 8753 345655566664 3321111 1 13566677777666433334444433211 111 0001234
Q ss_pred eeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEecc
Q 004734 513 NNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANI 592 (732)
Q Consensus 513 ~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Ni 592 (732)
+|-+-+- |.. + ..--++++.+||+.+.- ....+|+|..
T Consensus 145 LNevvi~------------~~~-~---------------------------~~~~~~~v~id~~~~~~-~~~DGlivsT- 182 (295)
T PRK01231 145 LNDVVLH------------PGK-S---------------------------TRMIEFELYIDGQFVCS-QRSDGLIVST- 182 (295)
T ss_pred EEEEEEc------------cCC-C---------------------------CcEEEEEEEECCEEEEE-EEcceEEEeC-
Confidence 4432210 000 0 11236788899988752 2466777754
Q ss_pred CcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeCC----CccEEEcCCC
Q 004734 593 GSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLFA----PLPVQIDGEP 668 (732)
Q Consensus 593 p~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~~----~~pvqiDGE~ 668 (732)
|.-.-+.++.... -+-+..++++.++...-.. ...+++-+...++|+|+... ...+.+||..
T Consensus 183 ptGSTAY~lSAGG----------pIv~p~~~~~~itPI~ph~----l~~rpiVl~~~~~I~i~~~~~~~~~~~l~~DG~~ 248 (295)
T PRK01231 183 PTGSTAYALSGGG----------PIMHPKLDAIVLVPMFPHT----LSSRPIVVDGNSEIKIVISKDNRTYPRVSCDGQN 248 (295)
T ss_pred CCCchhhhhhcCC----------ceecCCCCeEEEEecCCCc----cCCCCEEECCCCEEEEEEccCCCCceEEEeCCCc
Confidence 2211111222111 1122234566666432111 11356666666788887742 3568999997
Q ss_pred CC-C---CceEEEEEecceeEEEe
Q 004734 669 WF-Q---QPCTLAISHHGQAFMLK 688 (732)
Q Consensus 669 ~~-~---~P~~I~I~~~~~~~ml~ 688 (732)
.. . ..++|+..+....++.+
T Consensus 249 ~~~l~~g~~i~i~~s~~~~~l~~~ 272 (295)
T PRK01231 249 SVTLAPGDTVTIRKKPQKLRLIHP 272 (295)
T ss_pred eEecCCCCEEEEEECCCeEEEEEc
Confidence 42 2 34666666665555543
No 39
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.71 E-value=0.0027 Score=68.44 Aligned_cols=252 Identities=15% Similarity=0.068 Sum_probs=124.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEeccCCcc-HHHH----HhhhC--CCCeEEEEcCchhHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPE-VGLF----LFRKV--PHFRVLVCGGDGTVGWVLN 433 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~t~~p~-~al~----l~r~~--~~~~Ivv~GGDGTV~~VLn 433 (732)
++.+++|.|+.. ....++++.+...|... .++ +....... .+.. -..+. ..+.||+.|||||+..++.
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~-v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 81 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVV-FEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLGIGR 81 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEE-EecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHHHHH
Confidence 456899988765 34556777777766543 332 21111000 0000 01122 3578999999999999999
Q ss_pred HHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEcc-CCcccCCCcee
Q 004734 434 AIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ-QGKLLEPPKFL 512 (732)
Q Consensus 434 ~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~-~g~~~~~~~~f 512 (732)
.+.. ..+||-=+.+|+-.=|+ ..+. +++.+.|.++.++.-..-.|..+++.-. .++. ....+.
T Consensus 82 ~~~~----~~~pilGIn~G~lGFL~----------~~~~-~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-~~~~~A 145 (291)
T PRK02155 82 QLAP----YGVPLIGINHGRLGFIT----------DIPL-DDMQETLPPMLAGNYEEEERMLLEARVVRDGEP-IFHALA 145 (291)
T ss_pred HhcC----CCCCEEEEcCCCccccc----------cCCH-HHHHHHHHHHHcCCceEEEeEEEEEEEEECCeE-EEeeee
Confidence 8864 23454445666543222 1111 3466677777666433333443332210 1110 000122
Q ss_pred eeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEecc
Q 004734 513 NNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANI 592 (732)
Q Consensus 513 ~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Ni 592 (732)
+|-+. +.+.....--.+++.+||+.+.. ...-+|+|..
T Consensus 146 lNev~----------------------------------------v~~~~~~~~~~~~v~i~~~~~~~-~~gDGlIVsT- 183 (291)
T PRK02155 146 FNDVV----------------------------------------VNRSGFSGMVELRVSVDGRFMYN-QRSDGLIVAT- 183 (291)
T ss_pred eehee----------------------------------------eccCCCCceEEEEEEECCEEEEE-EecCeEEEEC-
Confidence 22111 00000011246788899988752 2466777754
Q ss_pred CcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeC--CCccEEEcCCCCC
Q 004734 593 GSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLF--APLPVQIDGEPWF 670 (732)
Q Consensus 593 p~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~--~~~pvqiDGE~~~ 670 (732)
|.-.-+..+.... -+-+..++++.++...-.. + ..+++-+...+.|+|+.. .+..+.+||+...
T Consensus 184 PtGSTAYslSaGG----------PIv~p~~~~~~ltPI~p~~-l---~~rpiVl~~~~~i~i~~~~~~~~~l~~DG~~~~ 249 (291)
T PRK02155 184 PTGSTAYALSAGG----------PILHPQLPGWVLVPIAPHT-L---SNRPIVLPDDSEVAIQIVGGRDVSVNFDMQSLT 249 (291)
T ss_pred CCchhhhhhhcCC----------cccCCCCCeEEEEecCcCc-c---CCCCEEECCCCEEEEEEcCCCcEEEEEcCCcce
Confidence 2211112222111 1122235566666432111 1 124555666667777664 3567999998763
Q ss_pred -C---CceEEEEEecceeEEEec
Q 004734 671 -Q---QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 671 -~---~P~~I~I~~~~~~~ml~~ 689 (732)
. ..+.|+.......++.+.
T Consensus 250 ~l~~~d~i~i~~s~~~~~~~~~~ 272 (291)
T PRK02155 250 SLELGDRIEVRRSPHTVRFLHPV 272 (291)
T ss_pred eCCCCCEEEEEECCCeEEEEecC
Confidence 2 235666666555555443
No 40
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.69 E-value=0.0031 Score=67.75 Aligned_cols=248 Identities=15% Similarity=0.150 Sum_probs=124.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCC---ccHHHHHhhhC--CCCeEEEEcCchhHHHHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQG---PEVGLFLFRKV--PHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~---p~~al~l~r~~--~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++.+.+|.|+.. ...++++++...|...++ +.+..... ....... .+. ..+.|++.|||||+=.++..+.
T Consensus 10 ~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dlvi~iGGDGT~L~aa~~~~ 85 (287)
T PRK14077 10 IKKIGLVTRPNV---SLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGL-DELFKISDFLISLGGDGTLISLCRKAA 85 (287)
T ss_pred CCEEEEEeCCcH---HHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccch-hhcccCCCEEEEECCCHHHHHHHHHhc
Confidence 567999999863 566788888877754432 11211000 0000000 111 3578999999999888887765
Q ss_pred hcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEE--ccCCcccCCCceeee
Q 004734 437 KQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAIL--NQQGKLLEPPKFLNN 514 (732)
Q Consensus 437 ~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~--~~~g~~~~~~~~f~N 514 (732)
. ..+||--+-+|+ ||. +...++ +.+.+.|.++.++.-..-.|-.+++. ...+. ....+.+|
T Consensus 86 ~----~~~PilGIN~G~-------lGF---Lt~~~~-~~~~~~l~~i~~g~y~ie~r~~L~~~v~~~~~~--~~~~~AlN 148 (287)
T PRK14077 86 E----YDKFVLGIHAGH-------LGF---LTDITV-DEAEKFFQAFFQGEFEIEKPYMLSVFLEKKQGK--ILEKLAFN 148 (287)
T ss_pred C----CCCcEEEEeCCC-------ccc---CCcCCH-HHHHHHHHHHHcCCCeEEEEEEEEEEEEeCCce--EEEEEEee
Confidence 4 234544446665 443 222222 34666777776654222222222221 11010 00112222
Q ss_pred eeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCc
Q 004734 515 YLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGS 594 (732)
Q Consensus 515 yfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~ 594 (732)
-+ + +.+.-...--.+++++||+.+.- -..-+|+|.. |.
T Consensus 149 ev--------v--------------------------------i~~~~~~~~~~~~v~id~~~~~~-~~~DGlIVST-PT 186 (287)
T PRK14077 149 DV--------V--------------------------------ISKNNQASMAHIEAFLNEKYFNE-YFGDGVIVAT-PA 186 (287)
T ss_pred ee--------e--------------------------------eccCCCccEEEEEEEECCEEEEE-EEcCEEEEeC-CC
Confidence 11 0 00000011236788899988762 2466777764 22
Q ss_pred ccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeCCCccEEEcCCCCC-C--
Q 004734 595 YMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLFAPLPVQIDGEPWF-Q-- 671 (732)
Q Consensus 595 ~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~-~-- 671 (732)
-.-+..+..... +-+..++++.++...-.. ...+++-+....+|+|+...+..+.+||.... .
T Consensus 187 GSTAYslSAGGP----------Iv~P~~~~~~ltPI~Phs----l~~rpiVl~~~~~I~i~~~~~~~l~~DG~~~~~l~~ 252 (287)
T PRK14077 187 GSTAYNMSANGP----------IIYPLSQVFILTPVCSHS----LTQRPIVLPKGFEVEFKTKSDCILCIDGQDRYKMND 252 (287)
T ss_pred chhHhHhhcCCc----------ccCCCCCeEEEEeccccc----ccCCCEEECCCCEEEEEECCCEEEEEcCCeeEecCC
Confidence 111122222110 111234566666532111 12355556666778888777888999999753 2
Q ss_pred -CceEEEEEecceeEEE
Q 004734 672 -QPCTLAISHHGQAFML 687 (732)
Q Consensus 672 -~P~~I~I~~~~~~~ml 687 (732)
..++|+..+....++-
T Consensus 253 ~d~i~I~~s~~~~~lv~ 269 (287)
T PRK14077 253 FKSIKVGLSDKNVALIR 269 (287)
T ss_pred CCEEEEEECCCEEEEEE
Confidence 4466666665555544
No 41
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.55 E-value=9.8e-06 Score=86.04 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=49.9
Q ss_pred ccCCCCCeeEeeeeCCCCCccccccCCCCC--CCCCCCCcccCCcCcccccccccccCccchhhhcCCCcc
Q 004734 74 KVPLAPHTWVLESVSRGKNLNCCVCLKSMS--PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (732)
Q Consensus 74 ~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~--~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 142 (732)
.+...+|.|.++.|+ +..+|.+|.+.|| |.||| +|..|++.||++|+..+...|-.
T Consensus 125 ly~~ngh~fqakr~n--rr~~c~ic~d~iwglgrqgy-----------rcinckl~vhkkch~~v~~~cg~ 182 (593)
T KOG0695|consen 125 LYRANGHLFQAKRFN--RRAYCGICSDRIWGLGRQGY-----------RCINCKLLVHKKCHGLVPLTCGK 182 (593)
T ss_pred HHhhcCcchhhhhhc--cceeeeechhhhhhcccccc-----------eeecceeehhhhhcccccchhhh
Confidence 455689999999987 7899999999999 58886 99999999999999999888853
No 42
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=97.47 E-value=2.4e-05 Score=87.35 Aligned_cols=68 Identities=26% Similarity=0.552 Sum_probs=54.9
Q ss_pred HHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccch
Q 004734 56 LGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCS 133 (732)
Q Consensus 56 ~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~ 133 (732)
.-||..+--+|.+ -.|.|...+.. +||-|-+|.+.|.| +||+ +|..|++.+|++|+
T Consensus 253 pi~~ek~~~~rvk---------vPHTf~vHSY~--rpTVCq~CkkLLkGL~rQGl-----------qCkDCk~NcHkrCa 310 (888)
T KOG4236|consen 253 PIWMEKMLMSRVK---------VPHTFIVHSYT--RPTVCQYCKKLLKGLFRQGL-----------QCKDCKFNCHKRCA 310 (888)
T ss_pred Cchhhhhhhhccc---------CCeeEEEeecc--CchHHHHHHHHHHHHHhcCc-----------ccccCCcchhhhhh
Confidence 4466555444443 25999987664 99999999999886 8997 99999999999999
Q ss_pred hhhcCCCcccee
Q 004734 134 LSAHKDCKCVSM 145 (732)
Q Consensus 134 ~~~~~~Ck~~~~ 145 (732)
.++.++|-....
T Consensus 311 ~~v~~dClge~~ 322 (888)
T KOG4236|consen 311 MKVPNDCLGEVT 322 (888)
T ss_pred hhccccccccee
Confidence 999999987654
No 43
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.46 E-value=0.0046 Score=66.99 Aligned_cols=253 Identities=15% Similarity=0.125 Sum_probs=128.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEecc-CC-c--cHHH---------HHhhhC--CCCeEEEEcCc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSST-QG-P--EVGL---------FLFRKV--PHFRVLVCGGD 425 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~t-~~-p--~~al---------~l~r~~--~~~~Ivv~GGD 425 (732)
++.+.+|.|+.. ....++.+++...|... +++-.... .. . .... ...... ..+.|++.|||
T Consensus 5 ~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 82 (306)
T PRK03372 5 SRRVLLVAHTGR--DEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGD 82 (306)
T ss_pred ccEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCC
Confidence 467999988744 34566777777766543 33211110 00 0 0000 000111 24789999999
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEc-cCCc
Q 004734 426 GTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILN-QQGK 504 (732)
Q Consensus 426 GTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~-~~g~ 504 (732)
||+=.++..+.. ..+||--+.+|+-.=|+.. ++ +++.++|.++.++.-..-.|-.+++.- ..|+
T Consensus 83 GT~L~aar~~~~----~~~PilGIN~G~lGFL~~~----------~~-~~~~~~l~~i~~g~y~i~~R~~L~~~v~~~g~ 147 (306)
T PRK03372 83 GTILRAAELARA----ADVPVLGVNLGHVGFLAEA----------EA-EDLDEAVERVVDRDYRVEERMTLDVTVRVGGE 147 (306)
T ss_pred HHHHHHHHHhcc----CCCcEEEEecCCCceeccC----------CH-HHHHHHHHHHHcCCceEEEeeeEEEEEEECCE
Confidence 999888887664 3456666788774333221 11 356677777776654333333332210 0121
Q ss_pred ccCCCceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCe
Q 004734 505 LLEPPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDA 584 (732)
Q Consensus 505 ~~~~~~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~ 584 (732)
. ....+.+|-+.+. |.. ...-..+++.+||+.+.- ...
T Consensus 148 ~-~~~~~ALNdvvi~------------r~~----------------------------~~~~~~~~v~idg~~~~~-~~~ 185 (306)
T PRK03372 148 I-VWRGWALNEASLE------------KAD----------------------------REGMLEVVLEVDGRPVSS-FGC 185 (306)
T ss_pred E-EeeeeEEEeEEee------------cCC----------------------------CCcEEEEEEEECCEEEEE-Eec
Confidence 0 0011233322110 100 011236788899998752 246
Q ss_pred eEEEEec-cCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeC---CCc
Q 004734 585 EGVLVAN-IGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLF---APL 660 (732)
Q Consensus 585 ~~l~v~N-ip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~---~~~ 660 (732)
-+|+|.. ..|.+ ..+.... -+-+-.++++.++...-. ....+++-+....+|+|+.. +..
T Consensus 186 DGlIVsTPTGSTA--YslSAGG----------PIv~P~~~~~~itPI~Ph----~l~~RplVv~~~~~I~i~~~~~~~~~ 249 (306)
T PRK03372 186 DGVLVSTPTGSTA--YAFSAGG----------PVVWPDLEALLVVPLNAH----ALFARPLVVSPTSTVAVEILADTSDA 249 (306)
T ss_pred CEEEEeCCCchHH--HHhhcCC----------cccCCCCCeEEEEecccc----cCCCCCeEECCCCEEEEEEecCCCcE
Confidence 7787764 22221 1222111 011223456666643211 11235666666777888764 356
Q ss_pred cEEEcCCCCCC----CceEEEEEecceeEEEecC
Q 004734 661 PVQIDGEPWFQ----QPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 661 pvqiDGE~~~~----~P~~I~I~~~~~~~ml~~~ 690 (732)
.+.+||..... ..++|+..+....++-.+.
T Consensus 250 ~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~ 283 (306)
T PRK03372 250 VLWCDGRRSVDLPPGARVEVRRGATPVRLARLDS 283 (306)
T ss_pred EEEEcCCeeEecCCCCEEEEEECCCeEEEEEeCC
Confidence 79999997532 3466666666666665443
No 44
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.39 E-value=0.012 Score=63.41 Aligned_cols=250 Identities=14% Similarity=0.113 Sum_probs=122.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEeccC-CccHHH-------HH--hhhC--CCCeEEEEcCchhH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQ-GPEVGL-------FL--FRKV--PHFRVLVCGGDGTV 428 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~t~-~p~~al-------~l--~r~~--~~~~Ivv~GGDGTV 428 (732)
++++++|.|+.. ....++..++...|... +++ +.... .++... .. ..+. ..+.|++.|||||+
T Consensus 5 ~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~ 81 (296)
T PRK04539 5 FHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVY-LDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTF 81 (296)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEE-EecccccccchhccccccccccchhhcCcCCCEEEEECCcHHH
Confidence 678999999855 34556777777766543 333 21100 000000 00 0112 24789999999999
Q ss_pred HHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEcc-CCcccC
Q 004734 429 GWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ-QGKLLE 507 (732)
Q Consensus 429 ~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~-~g~~~~ 507 (732)
=.++..+.. ..+||-=+-+|+ ||+=..++ + +++.+.|.++.++.-..-.|..+++.-. .|.. .
T Consensus 82 L~aa~~~~~----~~~PilGIN~G~-------lGFL~~~~---~-~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~~~-~ 145 (296)
T PRK04539 82 LSVAREIAP----RAVPIIGINQGH-------LGFLTQIP---R-EYMTDKLLPVLEGKYLAEERILIEAALIREGKT-A 145 (296)
T ss_pred HHHHHHhcc----cCCCEEEEecCC-------CeEeeccC---H-HHHHHHHHHHHcCCceEEEeeeEEEEEEECCee-e
Confidence 888887764 234544456665 55422222 1 3456666666655322222222222100 0100 0
Q ss_pred CCceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEE
Q 004734 508 PPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGV 587 (732)
Q Consensus 508 ~~~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l 587 (732)
...+. +|-+.- .+.....--.+++.+||+.+.- ...-++
T Consensus 146 ~~~~A-------------------------------LNdvvi---------~~~~~~~~~~~~v~id~~~~~~-~~~DGl 184 (296)
T PRK04539 146 ERALA-------------------------------LNDAVL---------SRGGAGQMIEFEVFVNREFVYT-QRSDGL 184 (296)
T ss_pred eeeee-------------------------------ehhhhh---------ccCCcCceEEEEEEECCEEEEE-EecCeE
Confidence 00011 122211 1100112246788899988752 246778
Q ss_pred EEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceEEeEeeEEEEEeC--CCccEEE
Q 004734 588 LVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARRLAQGQSIRIQLF--APLPVQI 664 (732)
Q Consensus 588 ~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vrl~q~~~I~I~~~--~~~pvqi 664 (732)
+|.. |.-.-+.++.... -+-+..++++.++... |. ...+++-+....+|+|+.. ....+.+
T Consensus 185 IVsT-PTGSTAYslSAGG----------PIv~P~~~~~~itPI~Phs-----l~~rplVl~~~~~i~i~~~~~~~~~l~~ 248 (296)
T PRK04539 185 IVST-PTGSTAYSLAAGG----------PIMQAGLHAFTLVPICPQS-----MTNRPIAIPDTSEIEILVTQGGDARVHF 248 (296)
T ss_pred EEEC-CCcHHHHHhhCCC----------ceeCCCCCeEEEEecCcCc-----ccCCCEEECCCCEEEEEEcCCCcEEEEE
Confidence 7764 2211111222111 0111224566666432 21 1135666666677877664 3566999
Q ss_pred cCCCCC-C---CceEEEEEecceeEEEe
Q 004734 665 DGEPWF-Q---QPCTLAISHHGQAFMLK 688 (732)
Q Consensus 665 DGE~~~-~---~P~~I~I~~~~~~~ml~ 688 (732)
||.... . ..++|+..+....++-+
T Consensus 249 DG~~~~~l~~~d~i~i~~s~~~~~li~~ 276 (296)
T PRK04539 249 DGQTHIDVQNLDRITIRRYRNPLRILHP 276 (296)
T ss_pred cCCceeecCCCCEEEEEECCCceEEEEc
Confidence 999753 2 33555555555555443
No 45
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.32 E-value=4.7e-05 Score=83.00 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=48.9
Q ss_pred cCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 75 ~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
-|...|.|.....+ .||||.+|...|.| -||+ +|+.|.+.||.+|+..++.-|-.-
T Consensus 106 dpr~kHkf~~~tYs--sPTFCDhCGsLLyGl~HQGm-----------KC~~C~mNVH~rCv~nVPslCG~D 163 (683)
T KOG0696|consen 106 DPRSKHKFKIHTYS--SPTFCDHCGSLLYGLIHQGM-----------KCDTCDMNVHHRCVENVPSLCGTD 163 (683)
T ss_pred CcccccceeeeecC--CCchhhhHHHHHHHHHhccc-----------ccccccchHHHHHhhcCCcccCCc
Confidence 35778999998776 89999999998886 5775 999999999999999999988653
No 46
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.28 E-value=0.029 Score=60.55 Aligned_cols=249 Identities=16% Similarity=0.121 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCc--cHH------HHHh---hhC--CCCeEEEEcCchhHHH
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGP--EVG------LFLF---RKV--PHFRVLVCGGDGTVGW 430 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p--~~a------l~l~---r~~--~~~~Ivv~GGDGTV~~ 430 (732)
.+.+|.|+.. ....++.+++...|....+ +.+...... ... ...+ .+. ..+.|++.|||||+=.
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~ 79 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFLR 79 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHHH
Confidence 4788888744 3455677787776654432 222110000 000 0000 122 3478999999999988
Q ss_pred HHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCc
Q 004734 431 VLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK 510 (732)
Q Consensus 431 VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~ 510 (732)
++..+.. ..+||-=+-+|+ ||+= ...++ +++.+.|.++.++.-..-.|-.+++.- .++......
T Consensus 80 aa~~~~~----~~~PilGIN~G~-------lGFL---t~~~~-~~~~~~l~~i~~g~~~i~~r~~L~~~~-~~~~~~~~~ 143 (292)
T PRK01911 80 TATYVGN----SNIPILGINTGR-------LGFL---ATVSK-EEIEETIDELLNGDYTIEERSLLQLES-NPKLFGELN 143 (292)
T ss_pred HHHHhcC----CCCCEEEEecCC-------CCcc---cccCH-HHHHHHHHHHHcCCceEEEEeeEEEEE-cCCcceeee
Confidence 8887754 235544456666 4432 22222 456777777776653332333333221 111000012
Q ss_pred eeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEe
Q 004734 511 FLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVA 590 (732)
Q Consensus 511 ~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~ 590 (732)
+.+|=+.+. |.. ...-..+++++||+.+.. ...-+|+|.
T Consensus 144 ~alNdvvi~------------r~~----------------------------~~~~i~~~v~idg~~~~~-~~~DGlIVs 182 (292)
T PRK01911 144 FALNEIAIL------------KRD----------------------------TSSMITVHTYLNGEYLNS-YWADGLIVA 182 (292)
T ss_pred EEEEEEEEe------------cCC----------------------------CCcEEEEEEEECCEEEEE-EeeceeEEC
Confidence 333322221 100 001136788999997752 246778875
Q ss_pred ccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceEEeEeeEEEEEeC---CCccEEEcC
Q 004734 591 NIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARRLAQGQSIRIQLF---APLPVQIDG 666 (732)
Q Consensus 591 Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vrl~q~~~I~I~~~---~~~pvqiDG 666 (732)
. |.-.-+..+.... -+-+.-++++.++... |.- ..+++-+....+|+|+.. ....+.+||
T Consensus 183 T-PTGSTAYslSAGG----------PIv~P~~~~~~ltPI~Ph~l-----~~RplVl~~~~~I~i~~~~~~~~~~l~~DG 246 (292)
T PRK01911 183 T-PTGSTGYSLSCGG----------PIIVPDAKSFVITPIAPHNL-----NVRPLVIPDDTEITLEVESRSDNFLVSLDS 246 (292)
T ss_pred C-CCcHHHHHhhCCC----------cccCCCCCEEEEEecccCcc-----CCCCEEECCCCEEEEEEecCCCceEEEEeC
Confidence 4 2211111222111 0112234566665431 211 124555555667777654 245689999
Q ss_pred CCCCC---CceEEEEEecceeEEEe
Q 004734 667 EPWFQ---QPCTLAISHHGQAFMLK 688 (732)
Q Consensus 667 E~~~~---~P~~I~I~~~~~~~ml~ 688 (732)
..+.. ..++|+..+....++-.
T Consensus 247 ~~~~l~~gd~v~i~~s~~~~~lv~~ 271 (292)
T PRK01911 247 RSETVDNGTELTIKKADFTIKLVEL 271 (292)
T ss_pred CeeecCCCCEEEEEECCCeEEEEEe
Confidence 98643 33556656555555543
No 47
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.27 E-value=0.022 Score=60.54 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=120.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCC
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVS 442 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~ 442 (732)
++.+.+|.|+.. ...++.+++..+|....+ ++.. . . ...+.|++.|||||+=.++..+... .
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g~-~~~~-~-~---------~~~D~vi~lGGDGT~L~a~~~~~~~---~ 63 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYGF-TVVD-H-P---------KNANIIVSIGGDGTFLQAVRKTGFR---E 63 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCCC-EEEc-C-C---------CCccEEEEECCcHHHHHHHHHhccc---C
Confidence 456888888776 456788888887765443 1111 1 0 1247899999999997777665431 1
Q ss_pred CCcEEEeeC-CCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccchh
Q 004734 443 PPPVAILPA-GTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGCD 521 (732)
Q Consensus 443 ~ppvaILPl-GTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG~D 521 (732)
.+||-=+.+ | .||. +.+.++ +++.+.+.++.++.-..-.|..+++.- .|+ ...+.+|-+.+ -
T Consensus 64 ~~pilgIn~~G-------~lGF---L~~~~~-~~~~~~l~~i~~g~~~~~~r~~l~~~v-~~~---~~~~alNevvi-~- 126 (264)
T PRK03501 64 DCLYAGISTKD-------QLGF---YCDFHI-DDLDKMIQAITKEEIEVRKYPTIEVTV-DGS---TSFYCLNEFSI-R- 126 (264)
T ss_pred CCeEEeEecCC-------CCeE---cccCCH-HHHHHHHHHHHcCCcEEEEeeeEEEEE-CCc---cceEEEEEEEE-c-
Confidence 345322444 4 3332 111122 356677777766543222222222221 111 01223332221 0
Q ss_pred HHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEec-cCcccCCcc
Q 004734 522 AKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVAN-IGSYMGGVD 600 (732)
Q Consensus 522 A~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~N-ip~~gGG~~ 600 (732)
+. ...-..+++.+||+.+.- ...-+|+|.. ..|.+ .+
T Consensus 127 --------------------------------------~~-~~~~~~~~v~id~~~~~~-~~~DGlIVsTPtGSTA--Y~ 164 (264)
T PRK03501 127 --------------------------------------SS-IIKTFVIDVYIDDLHFET-FRGDGMVVSTPTGSTA--YN 164 (264)
T ss_pred --------------------------------------CC-CCceEEEEEEECCEEeEE-EecCEEEEeCCCchHH--HH
Confidence 00 011235788999988762 2467787764 22221 12
Q ss_pred cCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhh-hhccCCceEEeEeeEEEEEeCC----CccEEEcCCCCCCC---
Q 004734 601 LWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKL-QVGLSRARRLAQGQSIRIQLFA----PLPVQIDGEPWFQQ--- 672 (732)
Q Consensus 601 l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l-~~gl~~~vrl~q~~~I~I~~~~----~~pvqiDGE~~~~~--- 672 (732)
+.... -+-+..++++.++...-+... ...+.+++-+....+|+|+... ...+.+||+.....
T Consensus 165 lSAGG----------PIv~P~~~~~~itPI~P~~~~~~~~l~rpiVl~~~~~I~i~~~~~~~~~~~l~~DG~~~~l~~~d 234 (264)
T PRK03501 165 KSVRG----------AVVDPLIPCFQVSELASLNNNTYRTLGSPFILSHERKLTLKIVQDGNDYPIIGMDNEALSIKHVE 234 (264)
T ss_pred hhcCC----------cccCCCCCeEEEEeccccCccccccCCCCEEECCCCEEEEEEecCCCCcEEEEEeCCEEEcCCCC
Confidence 22111 011223455556543221111 1123366667777788887642 34578999975433
Q ss_pred ceEEEEEecceeEEEec
Q 004734 673 PCTLAISHHGQAFMLKR 689 (732)
Q Consensus 673 P~~I~I~~~~~~~ml~~ 689 (732)
.+.|+..+....++-.+
T Consensus 235 ~i~I~~s~~~~~lv~~~ 251 (264)
T PRK03501 235 KIDIRLSDKQIKTVKLK 251 (264)
T ss_pred EEEEEECCCEEEEEEeC
Confidence 35555565555555544
No 48
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.07 E-value=0.032 Score=60.54 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=57.0
Q ss_pred EEEEEECCEEEEecCCeeEEEEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceEE
Q 004734 568 QVRVVVDGTEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARRL 646 (732)
Q Consensus 568 ~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vrl 646 (732)
.+++.+||+.+.- ...-+|+|.. |.-.-+.++.... -+-+-.++++.++... |. ...+++-+
T Consensus 166 ~~~v~id~~~~~~-~~~DGlIVsT-PTGSTAYslSAGG----------PIv~P~~~~~~itPI~Phs-----l~~RplVl 228 (305)
T PRK02649 166 HFEIAIGRHAPVD-IAADGVILST-PTGSTAYSLSAGG----------PVITPDVPVLQLTPICPHS-----LASRALVF 228 (305)
T ss_pred EEEEEECCEEEEE-EecCeEEEeC-CCcHHHHHhhCCC----------cccCCCCCeEEEEecCcCC-----CCCCCEEE
Confidence 5678899987652 2466777764 2211112222221 1112235666666542 21 12245555
Q ss_pred eEeeEEEEEeC--CCccEEEcCCCCC-C---CceEEEEEecceeEEEec
Q 004734 647 AQGQSIRIQLF--APLPVQIDGEPWF-Q---QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 647 ~q~~~I~I~~~--~~~pvqiDGE~~~-~---~P~~I~I~~~~~~~ml~~ 689 (732)
.....|+|+.. ....+.+||.... . ..++|+..+....++-.+
T Consensus 229 p~~~~I~i~~~~~~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~~ 277 (305)
T PRK02649 229 SDSEPVTVFPATPERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRLQ 277 (305)
T ss_pred CCCCEEEEEecCCCcEEEEEecceeEecCCCCEEEEEECCCEEEEEEcC
Confidence 55566777654 3466899998843 2 346677776666666544
No 49
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=96.88 E-value=0.0029 Score=68.20 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=36.5
Q ss_pred HHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhh
Q 004734 407 GLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 407 al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
...+++.. .-+.|+.+|||||...|++++. .+.||-=||.||-|-..
T Consensus 89 T~~~~r~~~~~gVdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~Sg 138 (355)
T COG3199 89 TINAVRRMVERGVDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSG 138 (355)
T ss_pred HHHHHHHHHhcCceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceecc
Confidence 33444444 2477999999999999999994 35788888999999864
No 50
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=96.81 E-value=0.006 Score=65.48 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccce
Q 004734 415 PHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRW 494 (732)
Q Consensus 415 ~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw 494 (732)
..+.|++.|||||+-.++..+.. ..+||-=+++||-|=|+.. . .+++...+.++.++....-.|.
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~~----~~~Pilgin~G~lgfl~~~-~----------~~~~~~~l~~~~~g~~~~~~r~ 140 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFGD----YDIPILGINTGTLGFLTEF-E----------PEDIEEALEKILAGEYSIEERM 140 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCTT----ST-EEEEEESSSSTSSSSE-E----------GCGHHHHHHHHHHTHCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHhcc----CCCcEEeecCCCccccccC-C----------HHHHHHHHHHHhcCCeEEEEee
Confidence 56889999999999999988764 3578888899985544322 1 2457778888877654444444
Q ss_pred EEE
Q 004734 495 KVA 497 (732)
Q Consensus 495 ~v~ 497 (732)
.++
T Consensus 141 ~l~ 143 (285)
T PF01513_consen 141 RLE 143 (285)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 51
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.76 E-value=0.071 Score=56.74 Aligned_cols=232 Identities=14% Similarity=0.162 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCc
Q 004734 366 LLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPP 445 (732)
Q Consensus 366 llV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~pp 445 (732)
+.+|.|+ ..+..++.+++...|....+ ++. ....+.|++.|||||+=.++..+.... .++|
T Consensus 3 i~Ii~~~---~~~~~~~~~~l~~~l~~~g~-~~~-------------~~~~Dlvi~iGGDGT~L~a~~~~~~~~--~~iP 63 (265)
T PRK04885 3 VAIISNG---DPKSKRVASKLKKYLKDFGF-ILD-------------EKNPDIVISVGGDGTLLSAFHRYENQL--DKVR 63 (265)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHHcCC-ccC-------------CcCCCEEEEECCcHHHHHHHHHhcccC--CCCe
Confidence 6777773 33466788888887754443 111 013478999999999988887765410 2345
Q ss_pred EEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEE--EEEccCCcccCCCceeeeeeccchhHH
Q 004734 446 VAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKV--AILNQQGKLLEPPKFLNNYLGVGCDAK 523 (732)
Q Consensus 446 vaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v--~i~~~~g~~~~~~~~f~NyfsIG~DA~ 523 (732)
|-=+.+|+-.=|+ ..++ +++.++|.++.++.-..-.|-.+ .+....+. ....+.+|-+.+.
T Consensus 64 ilGIN~G~lGFL~----------~~~~-~~~~~~l~~i~~g~y~i~~r~~L~~~v~~~~~~--~~~~~alNev~i~---- 126 (265)
T PRK04885 64 FVGVHTGHLGFYT----------DWRP-FEVDKLVIALAKDPGQVVSYPLLEVKITYEDGE--KEKYLALNEATIK---- 126 (265)
T ss_pred EEEEeCCCceecc----------cCCH-HHHHHHHHHHHcCCceEEEEeeEEEEEEeCCCc--Eeeeeeeeeeeec----
Confidence 4445565532222 1111 34677777777664322222112 21111010 0011233321110
Q ss_pred HHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEec-cCcc-----cC
Q 004734 524 VALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVAN-IGSY-----MG 597 (732)
Q Consensus 524 V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~N-ip~~-----gG 597 (732)
| . .....+++.+||+.+.- ...-+|+|.. ..|. +|
T Consensus 127 --------~----------------------------~--~~~~~~~v~id~~~~~~-~~gDGlIVsTptGSTAYslSaG 167 (265)
T PRK04885 127 --------R----------------------------I--EGTLVADVYINGVLFER-FRGDGLCVSTPTGSTAYNKSLG 167 (265)
T ss_pred --------c----------------------------C--CceEEEEEEECCEEEEE-EEcCEEEEECCCChHHHHhhCC
Confidence 0 0 01236788899988752 2466777754 2221 23
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccch-hhhhccCCceEEeEeeEEEEEeC--CCccEEEcCCCCCC---
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLG-KLQVGLSRARRLAQGQSIRIQLF--APLPVQIDGEPWFQ--- 671 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~-~l~~gl~~~vrl~q~~~I~I~~~--~~~pvqiDGE~~~~--- 671 (732)
|--++| .++++.++....+. ....+..+++-+...+.|+|+.. ....+.+||..+..
T Consensus 168 GPIv~P-----------------~~~~~~ltPI~~l~~r~~~~~~~plVl~~~~~I~i~~~~~~~~~l~~DG~~~~l~~~ 230 (265)
T PRK04885 168 GAVLHP-----------------SIEALQLTEIASINNRVFRTLGSPLILPKHHTITLKPVNDDDYQITVDHLTIKHKNV 230 (265)
T ss_pred CceeCC-----------------CCCeEEEEeeccccccccccCCCCEEECCCCEEEEEEcCCCcEEEEECCCEeecCCC
Confidence 322222 23444444322111 11112334566666677888764 35668999998433
Q ss_pred CceEEEEEecceeEEEec
Q 004734 672 QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 672 ~P~~I~I~~~~~~~ml~~ 689 (732)
..++|+..+....++-++
T Consensus 231 d~i~i~~s~~~~~li~~~ 248 (265)
T PRK04885 231 KSIEYRVANEKIRFARFR 248 (265)
T ss_pred CEEEEEECCceEEEEEcC
Confidence 346666666666555544
No 52
>PLN02727 NAD kinase
Probab=96.61 E-value=0.12 Score=62.74 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=58.9
Q ss_pred EEEEEECCEEEEecCCeeEEEEec-cCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEE
Q 004734 568 QVRVVVDGTEIEVPEDAEGVLVAN-IGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRL 646 (732)
Q Consensus 568 ~v~v~~DG~~i~lp~~~~~l~v~N-ip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl 646 (732)
.+++++||+.+.- ...-+|+|.. .+|.+ ..+.... .+-+..++++.++...-.. + ..+++-+
T Consensus 848 ~ieVyIDg~~l~t-yrgDGLIVSTPTGSTA--YSLSAGG----------PIVhP~v~aIvITPIcPHS-L---s~RPIVL 910 (986)
T PLN02727 848 KIECYEHDRLITK-VQGDGVIVATPTGSTA--YSTAAGG----------SMVHPNVPCMLFTPICPHS-L---SFRPVIL 910 (986)
T ss_pred EEEEEECCEEeEE-eecceEEEECCCchHH--hHhhcCC----------ceeCCCCCeEEEEecCccc-C---CCCCEEE
Confidence 5778899998863 2467888764 22221 1222111 1112234566666542111 1 1256667
Q ss_pred eEeeEEEEEeCC----CccEEEcCCCCCC----CceEEEEEecceeEEEec
Q 004734 647 AQGQSIRIQLFA----PLPVQIDGEPWFQ----QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 647 ~q~~~I~I~~~~----~~pvqiDGE~~~~----~P~~I~I~~~~~~~ml~~ 689 (732)
.....|+|++.. ...+.+||..... ..++|+..+....++-+.
T Consensus 911 p~ds~I~IkI~~~sr~~a~Ls~DGq~~~~L~~GD~I~Ir~S~~~v~lVr~~ 961 (986)
T PLN02727 911 PDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKS 961 (986)
T ss_pred CCCCeEEEEEccCCCCceEEEECCCeeeecCCCCEEEEEECCceEEEEEeC
Confidence 777788887742 4668999998632 346666666666666543
No 53
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.56 E-value=0.09 Score=61.96 Aligned_cols=248 Identities=17% Similarity=0.160 Sum_probs=121.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHH------HHHhhhC-CCCeEEEEcCchhHHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVG------LFLFRKV-PHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~a------l~l~r~~-~~~~Ivv~GGDGTV~~VLn~ 434 (732)
.+++.||.|+.. ....++.+++...|....+ +.+......... .....+. ..+.||+.|||||+=.++..
T Consensus 290 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~ 367 (569)
T PRK14076 290 PTKFGIVSRIDN--EEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVLRASKL 367 (569)
T ss_pred CcEEEEEcCCCC--HHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHHHHHHH
Confidence 356888888743 3456677777776643332 222110000000 0000111 24789999999999888887
Q ss_pred HHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEE--ccCCcccCCCcee
Q 004734 435 IDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAIL--NQQGKLLEPPKFL 512 (732)
Q Consensus 435 l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~--~~~g~~~~~~~~f 512 (732)
+.. ..+||-=+-+|+ ||.=..+ ++ +++.+.|.++.++.-..-.|-.+++. .. +. .....+.
T Consensus 368 ~~~----~~~PilGin~G~-------lGFL~~~---~~-~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~-~~-~~~~~~a 430 (569)
T PRK14076 368 VNG----EEIPIICINMGT-------VGFLTEF---SK-EEIFKAIDSIISGEYEIEKRTKLSGFILKD-GH-QNILPSA 430 (569)
T ss_pred hcC----CCCCEEEEcCCC-------CCcCccc---CH-HHHHHHHHHHHcCCceEEEeEEEEEEEEEC-Cc-ceeeeEE
Confidence 654 345555577777 4432211 11 45667777777664332222222221 11 11 0011234
Q ss_pred eeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEecc
Q 004734 513 NNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANI 592 (732)
Q Consensus 513 ~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Ni 592 (732)
+|=+.+- |.. + ..-..++|.+||+.+.- ...-+|+|..
T Consensus 431 lNdv~i~------------~~~-~---------------------------~~~~~~~v~i~~~~~~~-~~~DGlivsT- 468 (569)
T PRK14076 431 LNEVVIT------------TKN-P---------------------------AKMLHFEVYVNGELVEE-VRADGIIIST- 468 (569)
T ss_pred EEEEEEc------------cCC-C---------------------------CceEEEEEEECCEEEEE-EECCEEEEeC-
Confidence 4422110 100 0 11236788899998752 2466777754
Q ss_pred CcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceEEeEeeEEEEEeC-CCccEEEcCCCC-
Q 004734 593 GSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARRLAQGQSIRIQLF-APLPVQIDGEPW- 669 (732)
Q Consensus 593 p~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vrl~q~~~I~I~~~-~~~pvqiDGE~~- 669 (732)
|.-.-+.++..... +-+..++++.++... |. ...+++-+...+.|+|+.. .+..+.+||...
T Consensus 469 ptGSTaYslSAGGP----------iv~p~~~~~~~tPI~ph~-----l~~rplV~~~~~~i~i~~~~~~~~l~~DG~~~~ 533 (569)
T PRK14076 469 PTGSTAYSLSAGGP----------IVEPTVDGFIIVPICPFK-----LSSRPLVVSANSEIKIKLLKKSALVVIDGSIEF 533 (569)
T ss_pred CCchHHHHhhCCCc----------eeCCCCCeEEEEeeccCC-----CCCCCEEECCCCEEEEEEeCCcEEEEECCceee
Confidence 22111122221110 111124555555431 21 1235666666677887764 566789999864
Q ss_pred CC---CceEEEEEecceeEE
Q 004734 670 FQ---QPCTLAISHHGQAFM 686 (732)
Q Consensus 670 ~~---~P~~I~I~~~~~~~m 686 (732)
.. ..++|+..+....++
T Consensus 534 ~l~~gd~I~I~~s~~~~~~v 553 (569)
T PRK14076 534 EAKKGDEIIFRKSDSYAYFV 553 (569)
T ss_pred ecCCCCEEEEEECCceEEEE
Confidence 22 345555555555444
No 54
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.51 E-value=0.12 Score=59.25 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=57.1
Q ss_pred cEEEEEECCEEEEecCCeeEEEEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceE
Q 004734 567 WQVRVVVDGTEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARR 645 (732)
Q Consensus 567 ~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vr 645 (732)
..+++.+||+.+.. ...-+|+|.. |.-.-+..+.... .+-+..++++.++..- |. ...+++-
T Consensus 364 i~l~V~Idg~~v~~-~rgDGLIVST-PTGSTAYsLSAGG----------PIV~P~l~~ivlTPIcPHs-----Ls~RPIV 426 (508)
T PLN02935 364 TNLECYCDNSFVTC-VQGDGLILST-TSGSTAYSLAAGG----------SMVHPQVPGILFTPICPHS-----LSFRPLI 426 (508)
T ss_pred EEEEEEECCEeEEE-EECCcEEEec-CccHHHHHHhcCC----------cccCCCCCeEEEEecCCCc-----CCCCCeE
Confidence 35778899988762 2466777754 2211111222111 1112234566666542 21 1124566
Q ss_pred EeEeeEEEEEeC----CCccEEEcCCCCCC----CceEEEEEecceeEEEec
Q 004734 646 LAQGQSIRIQLF----APLPVQIDGEPWFQ----QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 646 l~q~~~I~I~~~----~~~pvqiDGE~~~~----~P~~I~I~~~~~~~ml~~ 689 (732)
+.....|+|+.. ....+.+||..... ..++|+..+....++...
T Consensus 427 lp~~s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~l~ 478 (508)
T PLN02935 427 LPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQV 478 (508)
T ss_pred ECCCCEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEeeC
Confidence 666677887754 24668999987532 346666666666655543
No 55
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.39 E-value=0.16 Score=54.19 Aligned_cols=242 Identities=16% Similarity=0.164 Sum_probs=116.7
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCC-CcEEEEeccCCccHHHH----HhhhCCCCeEEEEcCchhHHHHHHHHHhcC
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNP-VQVVELSSTQGPEVGLF----LFRKVPHFRVLVCGGDGTVGWVLNAIDKQN 439 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p-~qV~dl~~t~~p~~al~----l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~ 439 (732)
++.+|+|+.. ....++..++...|.. .+++ +.. .....+. -..+...+.|++.|||||+=.++. ..
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~~g~~~~-~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~---~~- 72 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLPPDWEII-YEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQ---RA- 72 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHhcCCEEE-Eec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHH---Hc-
Confidence 4788888744 3455677777765632 2332 211 1111110 001124578999999999755544 32
Q ss_pred CCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccc
Q 004734 440 FVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVG 519 (732)
Q Consensus 440 ~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG 519 (732)
..|-+| +-+|+= |+=..+ ++ +++.+.|+++.++.-..-.|..+++.- .|+ ...+.+|=+.+-
T Consensus 73 --~~PilG-IN~G~l-------GFL~~~---~~-~~~~~~l~~i~~g~~~i~~r~~L~~~v-~g~---~~~~aLNdvvv~ 134 (271)
T PRK01185 73 --KGPILG-INMGGL-------GFLTEI---EI-DEVGSAIKKLIRGEYFIDERMKLKVYI-NGE---RLEDCTNEAVIH 134 (271)
T ss_pred --CCCEEE-EECCCC-------ccCccc---CH-HHHHHHHHHHHcCCcEEEEeeEEEEEE-CCc---EeEEEEEEEEEe
Confidence 124454 466653 322212 11 456777777777643333333333321 121 011233322210
Q ss_pred hhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCCc
Q 004734 520 CDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGGV 599 (732)
Q Consensus 520 ~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~ 599 (732)
|.. + ..--.+++.+||+.+.- ...-+|+|.. |.-.-+.
T Consensus 135 ------------~~~-~---------------------------~~~i~~~v~i~~~~~~~-~~~DGlIVsT-PTGSTAY 172 (271)
T PRK01185 135 ------------TDR-I---------------------------AKIRQFKIYYDGHFLDT-FKADGVIVAT-PTGSTSY 172 (271)
T ss_pred ------------cCC-C---------------------------CcEEEEEEEECCEEEEE-EEeeEEEEeC-CCchHHH
Confidence 100 0 01125688899988752 2467787764 2211111
Q ss_pred ccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeEeeEEEEEeC--CCccEEEcCCCCC-C---Cc
Q 004734 600 DLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQGQSIRIQLF--APLPVQIDGEPWF-Q---QP 673 (732)
Q Consensus 600 ~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q~~~I~I~~~--~~~pvqiDGE~~~-~---~P 673 (732)
++.... -+-+..++++.++...-.. ...+++-+.....|+|+.. ....+.+||+... . ..
T Consensus 173 slSAGG----------PIv~P~~~~~~ltPI~Ph~----l~~rplVl~~~~~I~i~~~~~~~~~l~~DG~~~~~l~~~d~ 238 (271)
T PRK01185 173 SSSAGG----------PILLPNLEGMVISYIAPYS----SRPKSVVVPSESTVEIKIAGDQSSLLILDGQYEYKISKGDT 238 (271)
T ss_pred HhhCCC----------ceeCCCCCeEEEEecccCC----CCCCCEEECCCCEEEEEEcCCCCEEEEECCCceEecCCCCE
Confidence 222111 0112234555555432111 1235555555667777764 3567899999642 2 34
Q ss_pred eEEEEEecceeEEEec
Q 004734 674 CTLAISHHGQAFMLKR 689 (732)
Q Consensus 674 ~~I~I~~~~~~~ml~~ 689 (732)
++|+..++...++-.+
T Consensus 239 i~i~~s~~~~~~v~~~ 254 (271)
T PRK01185 239 VEISKSENYARFISFR 254 (271)
T ss_pred EEEEECCCeeEEEEcC
Confidence 6666666665555543
No 56
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.00094 Score=75.75 Aligned_cols=52 Identities=25% Similarity=0.495 Sum_probs=45.7
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCc
Q 004734 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 77 ~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 141 (732)
..+|+|..+.|- -|+||.-|+..||| .||+ +|..|++.+|.+|......+|-
T Consensus 170 ttphnf~~~t~~--tpt~cyecegllwglarqgl-----------rctqc~vk~hdkc~ell~adcl 223 (1283)
T KOG1011|consen 170 TTPHNFATTTFQ--TPTFCYECEGLLWGLARQGL-----------RCTQCQVKVHDKCRELLSADCL 223 (1283)
T ss_pred CCCCceeeeecc--CCchhhhhhhHHHHHhhccc-----------chhhccccHHHHHHHHhhhHHH
Confidence 468999988875 89999999999996 7886 9999999999999988777664
No 57
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.11 E-value=0.37 Score=51.12 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=56.5
Q ss_pred EEEEEECCEEEEecCCeeEEEEec-cCcc-----cCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhcc
Q 004734 568 QVRVVVDGTEIEVPEDAEGVLVAN-IGSY-----MGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGL 640 (732)
Q Consensus 568 ~v~v~~DG~~i~lp~~~~~l~v~N-ip~~-----gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl 640 (732)
.+++.+||+.+.- -..-+|+|.. ..|. +||--+.| .++++.++... |....+...
T Consensus 122 ~~~v~idg~~~~~-~~gDGlIVsTPtGSTAYslSAGGPIv~P-----------------~~~~~~itPI~Ph~~~~~~~~ 183 (259)
T PRK00561 122 PINIFIDNEFWEK-YRGSGLLIGPRTGSTALAKSAKGAVIFP-----------------RIDVIQIIELNPLLHPNQTTI 183 (259)
T ss_pred EEEEEECCEEEEE-EecCEEEEeCchHHHHHHHhCCCCccCC-----------------CCCeEEEEeeCCCCccccccc
Confidence 6788999988652 2466777754 2221 23322222 34566666532 221111122
Q ss_pred CCceEEeEeeEEEEEeCC------CccEEEcCCCCCC-Cc---eEEEEEeccee
Q 004734 641 SRARRLAQGQSIRIQLFA------PLPVQIDGEPWFQ-QP---CTLAISHHGQA 684 (732)
Q Consensus 641 ~~~vrl~q~~~I~I~~~~------~~pvqiDGE~~~~-~P---~~I~I~~~~~~ 684 (732)
.+++-+.....|+|+... ...+.+||+.... .+ +.|+.......
T Consensus 184 ~rplVl~~~~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~ 237 (259)
T PRK00561 184 QSPIILPIDTKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAM 237 (259)
T ss_pred CCCeEECCCCEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccce
Confidence 366667777788887653 3458999999754 22 55666655555
No 58
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.81 E-value=0.78 Score=49.05 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=55.9
Q ss_pred EEEEEECCEEEEecCCeeEEEEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEe
Q 004734 568 QVRVVVDGTEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLA 647 (732)
Q Consensus 568 ~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~ 647 (732)
.+++.+||+.+.- ...-+|+|.. |.-.-+.++.... -+-+.-++++.++...-. ....+++-+.
T Consensus 141 ~~~v~i~~~~~~~-~~~DGlIVsT-PtGSTAY~lSAGG----------PIv~P~~~~~~itPI~Ph----sl~~RpiVl~ 204 (272)
T PRK02231 141 DFHVYIDDKFAFS-QRSDGLIIST-PTGSTAYSLSAGG----------PILTPNLNAIALVPMFPH----TLSSRPLVID 204 (272)
T ss_pred EEEEEECCEEEEE-EecCeEEEEC-CCcHHHHHhhCCC----------ceeCCCCCeEEEEecccc----ccCCCCEEEC
Confidence 5788899987763 2466777764 2211111221111 011222455555543211 1123566666
Q ss_pred EeeEEEEEeCC----CccEEEcCCCCC-C---CceEEEEEecceeEEEe
Q 004734 648 QGQSIRIQLFA----PLPVQIDGEPWF-Q---QPCTLAISHHGQAFMLK 688 (732)
Q Consensus 648 q~~~I~I~~~~----~~pvqiDGE~~~-~---~P~~I~I~~~~~~~ml~ 688 (732)
....|+|+... ...+.+||.... . ..++|+..+....++-.
T Consensus 205 ~~~~I~i~~~~~~~~~~~l~~DG~~~~~l~~~d~v~I~~s~~~~~lv~~ 253 (272)
T PRK02231 205 GDSKISLRFAEYNTPQLEVSCDSQIALPFTPDDRVHVQKSPDKLRLLHL 253 (272)
T ss_pred CCCEEEEEEcCCCCccEEEEECCCeEEEeCCCcEEEEEEcCCEEEEEEc
Confidence 77788887642 366899999743 2 23566666665555543
No 59
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=94.75 E-value=0.0096 Score=68.40 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=60.4
Q ss_pred HHHHhhhhHHHHHHHHhhc---cCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCccccccc
Q 004734 48 FQWRRNINLGWMKAIARSK---KNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSIC 124 (732)
Q Consensus 48 ~~~~r~~~~~w~~~~~r~k---~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C 124 (732)
.+.-|++...|...+..-. ..+.-.+.+|...|.+.-+.|- -..||.+|..-++ .+| ++|+.|
T Consensus 144 ~~~~~r~~~~~~~~~~~l~geE~~ve~l~~vpl~~H~~~rktf~--~~~fC~~~~~~~l-~~g-----------frC~~C 209 (678)
T KOG0193|consen 144 LTKGRRTRLPWDTIASPLDGEELHVEPLENVPLTTHNFVRKTFF--PLAFCDSCCNKFL-FTG-----------FRCQTC 209 (678)
T ss_pred hhhccccccCcccCCCCCCccceeeeeccCCCccceeeeecccc--chhhhhhhcchhh-hcc-----------cccCCC
Confidence 3455667888888886655 4445557778889988877664 6789995554443 134 599999
Q ss_pred ccccCccchhhhcCCCc
Q 004734 125 GAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 125 ~~~vH~~C~~~~~~~Ck 141 (732)
+|.+|.+|..++...|-
T Consensus 210 ~~KfHq~Cs~~vp~~C~ 226 (678)
T KOG0193|consen 210 GYKFHQSCSPRVPTSCV 226 (678)
T ss_pred CCccccccCCCCCCCCC
Confidence 99999999999999997
No 60
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=94.57 E-value=0.0048 Score=65.18 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=54.6
Q ss_pred hhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCc
Q 004734 64 RSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 64 r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 141 (732)
++|--.+.+.-++..+|.+...... -|+.|.-|++++|+ ++|| +|..||+++|.+|...+..+|.
T Consensus 36 ~s~~~~p~~~lv~~r~~~~~~~g~~--~~~~~~~c~~~~~~vl~egL-----------~c~~c~~tch~rcr~lv~ldc~ 102 (348)
T KOG4239|consen 36 DSKHIQPLELLVPLRGHNFYTAGLL--LPTWCDKCGDFIWGVLREGL-----------LCIHCKFTCHIRCRMLVDLDCR 102 (348)
T ss_pred cccccCcccceeecccccccccccc--ccccchhhhHHHHHHHHHHH-----------hhhhcCCccCHHHHhhhhhhhc
Confidence 3443334556677889999887665 89999999999996 6776 9999999999999999999986
Q ss_pred cc
Q 004734 142 CV 143 (732)
Q Consensus 142 ~~ 143 (732)
.-
T Consensus 103 ~p 104 (348)
T KOG4239|consen 103 SP 104 (348)
T ss_pred CC
Confidence 43
No 61
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=94.34 E-value=2.2 Score=45.04 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCC
Q 004734 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGT 453 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGT 453 (732)
.+.|++.|||||+=.++..+.. ..+||-=+.+|+
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~----~~~PvlGIN~G~ 59 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMN----SGKPVYGMNRGS 59 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcC----CCCeEEEEeCCC
Confidence 3689999999999888877654 245544456665
No 62
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=94.06 E-value=0.023 Score=66.66 Aligned_cols=83 Identities=20% Similarity=0.404 Sum_probs=61.5
Q ss_pred HHhhhhHHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccC
Q 004734 50 WRRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAH 129 (732)
Q Consensus 50 ~~r~~~~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH 129 (732)
=+|+.|+.||.+++.-.....-.-....-.|+|..-... .+..|.||.+....++++ .-++|-.|+.+||
T Consensus 78 dn~ke~e~wi~~~kt~q~~e~~s~~~a~mphqw~Egnlp--vsskc~vc~k~cgs~~rl--------qd~rclwc~~~vh 147 (1099)
T KOG1170|consen 78 DNRKEMEKWINQSKTPQHLEFISPENAIMPHQWMEGNLP--VSSKCSVCEKPCGSVLRL--------QDYRCLWCGCCVH 147 (1099)
T ss_pred cchhHHHHhhccccchhhccccCCCcccCchhhhhcCCC--cccccccccccccccccc--------CCcceEeeccEee
Confidence 457789999998755443222111223678999998765 789999999987655544 2369999999999
Q ss_pred ccchhhhcCCCcc
Q 004734 130 LSCSLSAHKDCKC 142 (732)
Q Consensus 130 ~~C~~~~~~~Ck~ 142 (732)
..|..+..+.|.-
T Consensus 148 ~~c~~~~~~~cs~ 160 (1099)
T KOG1170|consen 148 DTCIGNLARACSL 160 (1099)
T ss_pred hhhhhhHHhhccc
Confidence 9999998887764
No 63
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.87 E-value=0.021 Score=61.42 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=36.6
Q ss_pred CCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 166 ~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
+.....|..|.--+|+..++ |++|.-|+..||.+|+..+..+
T Consensus 138 ~nrr~~c~ic~d~iwglgrq---gyrcinckl~vhkkch~~v~~~ 179 (593)
T KOG0695|consen 138 FNRRAYCGICSDRIWGLGRQ---GYRCINCKLLVHKKCHGLVPLT 179 (593)
T ss_pred hccceeeeechhhhhhcccc---cceeecceeehhhhhcccccch
Confidence 34568999999999987665 9999999999999999998755
No 64
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=93.80 E-value=0.016 Score=65.73 Aligned_cols=76 Identities=22% Similarity=0.465 Sum_probs=60.6
Q ss_pred HHhhhhHHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccc
Q 004734 50 WRRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAA 127 (732)
Q Consensus 50 ~~r~~~~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~ 127 (732)
..+..-..||.+..-++-+... +......|.|...+|. .++.|-+|..+|-| -||| +|..|+.-
T Consensus 495 Kte~~kkkWmeqfema~SNi~P-dya~an~H~fqmhtF~--~~tsCkvC~mllrGtfYQGY-----------~C~~c~~~ 560 (865)
T KOG2996|consen 495 KTEDLKKKWMEQFEMAKSNISP-DYARANNHDFQMHTFK--NTTSCKVCQMLLRGTFYQGY-----------KCEKCGAD 560 (865)
T ss_pred ecHHHHHHHHHHHHHHHhcCCc-ccccccCcceEEEecc--CCcchHHHHHHhhhhhhcce-----------eeeecccc
Confidence 3445566899998777766543 6667789999988775 89999999998886 4665 99999999
Q ss_pred cCccchhhhcCCC
Q 004734 128 AHLSCSLSAHKDC 140 (732)
Q Consensus 128 vH~~C~~~~~~~C 140 (732)
+|+.|...++ +|
T Consensus 561 ahkecl~~vp-~c 572 (865)
T KOG2996|consen 561 AHKECLGRVP-PC 572 (865)
T ss_pred HHHHhccCCC-Cc
Confidence 9999999865 45
No 65
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.37 E-value=0.028 Score=65.58 Aligned_cols=50 Identities=28% Similarity=0.573 Sum_probs=43.6
Q ss_pred CCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCCCCCCCCCCCCC
Q 004734 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDLGPFR 221 (732)
Q Consensus 165 n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~r 221 (732)
.+..+++|++|.+.+++. +.+|++|.-|...+|.+|+.++... |++..-.
T Consensus 165 ~l~Qpt~Cs~C~kFi~gL---~kqGyQCqvC~~vvHKkCh~kvv~~----C~~~~~~ 214 (694)
T KOG0694|consen 165 SLRQPTFCSWCQKFIWGL---RKQGYQCQVCWRVVHKKCHVKVVTL----CDFLDNL 214 (694)
T ss_pred eccCcchhhhhhhheecc---CCCceEEeeeeehHhhhhHHHHHHh----ccCcCcc
Confidence 567889999999999876 3469999999999999999998776 9999864
No 66
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=0.018 Score=65.70 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=43.8
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
+.||.|.. | ....++||.-|.-.+|+.-++ |+||.-|+..||++|...++.+
T Consensus 170 ttphnf~~-~-----t~~tpt~cyecegllwglarq---glrctqc~vk~hdkc~ell~ad 221 (1283)
T KOG1011|consen 170 TTPHNFAT-T-----TFQTPTFCYECEGLLWGLARQ---GLRCTQCQVKVHDKCRELLSAD 221 (1283)
T ss_pred CCCCceee-e-----eccCCchhhhhhhHHHHHhhc---ccchhhccccHHHHHHHHhhhH
Confidence 47898865 2 556789999999999997776 8999999999999999887654
No 67
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=92.58 E-value=0.05 Score=60.75 Aligned_cols=35 Identities=34% Similarity=0.710 Sum_probs=26.2
Q ss_pred ccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 93 ~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
..||||..-=. -.-+..++|+.||+.||+.|....
T Consensus 120 ~iCcVClg~rs---------~da~ei~qCd~CGi~VHEgCYGv~ 154 (707)
T KOG0957|consen 120 VICCVCLGQRS---------VDAGEILQCDKCGINVHEGCYGVL 154 (707)
T ss_pred eEEEEeecCcc---------ccccceeeccccCceecccccccc
Confidence 48999985321 112456899999999999998765
No 68
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=91.86 E-value=7.4 Score=41.80 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=55.6
Q ss_pred EEEEECCEEEEecCCeeEEEEeccCcccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhhccCCceEEeE
Q 004734 569 VRVVVDGTEIEVPEDAEGVLVANIGSYMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQVGLSRARRLAQ 648 (732)
Q Consensus 569 v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~gl~~~vrl~q 648 (732)
+++++||+.++- -..-+|+|.. |.-.-+.++.... .+-+-.++++.+.....+... .+++-+-.
T Consensus 152 ~~v~id~~~~~~-~r~DGliVsT-PTGSTAY~lSAGG----------PIv~P~l~ai~ltpi~p~~l~----~Rpiv~p~ 215 (281)
T COG0061 152 FEVYIDDEFFES-FRGDGLIVST-PTGSTAYNLSAGG----------PILHPGLDAIQLTPICPHSLS----FRPLVLPS 215 (281)
T ss_pred EEEEECCEEEEE-EecCEEEEEc-CCcHHHHhhhcCC----------CccCCCCCeEEEeecCCCccc----CCCEEECC
Confidence 678899988763 3567787764 3211112222221 122234667777654221110 23334444
Q ss_pred eeEEEEEeC----CCccEEEcCCCCCC----CceEEEEEecceeEEEecCC
Q 004734 649 GQSIRIQLF----APLPVQIDGEPWFQ----QPCTLAISHHGQAFMLKRAA 691 (732)
Q Consensus 649 ~~~I~I~~~----~~~pvqiDGE~~~~----~P~~I~I~~~~~~~ml~~~~ 691 (732)
...++++.. .+.-+-+||..... ..++++..+....+.-+...
T Consensus 216 ~~~v~i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~~ 266 (281)
T COG0061 216 SSTVRIEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRSY 266 (281)
T ss_pred CceEEEEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCCc
Confidence 445666653 22356799999753 23556666666666554443
No 69
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=91.03 E-value=0.11 Score=36.35 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.2
Q ss_pred cccccCCCCCCCCCCCCcccCCcCcccccccccccCccch
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCS 133 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~ 133 (732)
.|.+|++.+.+..+ +.|+.|.+.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~-----------Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYF-----------YHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEe-----------EEeCCCCCeEcCccC
Confidence 59999998875434 599999999999995
No 70
>PLN02929 NADH kinase
Probab=90.43 E-value=6.7 Score=42.59 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCC---------cchh--hHhhcCCCCCCCccccchHHHHHHHHH
Q 004734 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGT---------GNDL--ARVLFWGGGLSSVERNGGLCTMLQHIE 484 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGT---------GNDl--AR~Lgwg~g~~~~~~~~~~~~iL~~i~ 484 (732)
.+.||+.|||||+=.++..+ +. ..|-+| +-.|+ .|.| .|.+|.=..+ + .+++.+.|.++.
T Consensus 65 ~Dlvi~lGGDGT~L~aa~~~-~~---~iPvlG-IN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~---~-~~~~~~~L~~il 135 (301)
T PLN02929 65 VDLVVAVGGDGTLLQASHFL-DD---SIPVLG-VNSDPTQKDEVEEYSDEFDARRSTGHLCAA---T-AEDFEQVLDDVL 135 (301)
T ss_pred CCEEEEECCcHHHHHHHHHc-CC---CCcEEE-EECCCcccccccccccccccccCccccccC---C-HHHHHHHHHHHH
Confidence 47899999999998887776 32 234455 45563 1223 3456542222 2 245667777777
Q ss_pred Hhh
Q 004734 485 HAA 487 (732)
Q Consensus 485 ~a~ 487 (732)
++.
T Consensus 136 ~g~ 138 (301)
T PLN02929 136 FGR 138 (301)
T ss_pred cCC
Confidence 664
No 71
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=88.63 E-value=0.11 Score=36.42 Aligned_cols=29 Identities=31% Similarity=0.725 Sum_probs=12.6
Q ss_pred cccccCCCCCCCCCCCCcccCCcCcccccccccccCccch
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCS 133 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~ 133 (732)
.|.+|.+.+.+. ..+.|..|.+.+|..|+
T Consensus 2 ~C~~C~~~~~~~-----------~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-----------WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-----------ceEECccCCCccChhcC
Confidence 589999887641 24699999999999985
No 72
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=85.99 E-value=0.39 Score=33.57 Aligned_cols=29 Identities=28% Similarity=0.690 Sum_probs=13.3
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhh
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCH 204 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~ 204 (732)
.|..|++...+. ..++|.-|...+|.+|+
T Consensus 2 ~C~~C~~~~~~~-----~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-----WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-----ceEECccCCCccChhcC
Confidence 589999988762 16999999999999995
No 73
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=84.34 E-value=0.67 Score=32.47 Aligned_cols=29 Identities=28% Similarity=0.800 Sum_probs=24.5
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhh
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCH 204 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~ 204 (732)
.|++|++...+.. .++|.-|...+|.+|+
T Consensus 2 ~C~~C~~~~~~~~-----~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-----FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-----eEEeCCCCCeEcCccC
Confidence 6999999887642 4899999999999985
No 74
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=82.67 E-value=0.36 Score=54.08 Aligned_cols=53 Identities=25% Similarity=0.478 Sum_probs=45.9
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCC-CCCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 78 APHTWVLESVSRGKNLNCCVCLKSMS-PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 78 ~~H~w~~~~~~~~~p~~C~vC~~~l~-~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
..|.|..+.+. +|-+|..|.+.|- ++-+ ++|..|-+.+|..|-.+..-+|.++
T Consensus 285 r~htfi~kt~~--~~~~Cv~C~krIkfg~~s-----------LkCRdC~v~~H~~Cr~~l~lpCIP~ 338 (604)
T KOG3564|consen 285 RLHTFISKTVI--KPENCVPCGKRIKFGKLS-----------LKCRDCPVVCHIECRDKLTLPCIPT 338 (604)
T ss_pred ccchhhHhhcc--Ccccchhhhhhhhhhhcc-----------cccccCCeeechhHHhcCCCCCcCc
Confidence 46888888877 8999999999986 5444 4999999999999999999999875
No 75
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=81.46 E-value=4.5 Score=45.61 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=37.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCC------CCcEEEeeCCCcchhhHhhc
Q 004734 416 HFRVLVCGGDGTVGWVLNAIDKQNFVS------PPPVAILPAGTGNDLARVLF 462 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~~VLn~l~~~~~~~------~ppvaILPlGTGNDlAR~Lg 462 (732)
...|+|+|||--++.||....+.--.+ -..+-|||+|+ |.+||.||
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLg 127 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLG 127 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHh
Confidence 467999999999999999987642211 23578999999 99999998
No 76
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.43 E-value=2.4 Score=39.91 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred cCcchhhHHHHHHHHHHHHHHHhHHHHHHHhhh
Q 004734 22 MTESRLFILSCFIAALIGILTIAYTAFQWRRNI 54 (732)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 54 (732)
...-...|+.++++|.+|+|.+++|+++++||.
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344578899999999999999999988777744
No 77
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=76.71 E-value=1 Score=47.24 Aligned_cols=88 Identities=24% Similarity=0.488 Sum_probs=55.2
Q ss_pred CC-ccccccCCCC--CCCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceecCccceeeeeEeeeecccCCCC
Q 004734 91 KN-LNCCVCLKSM--SPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPS 167 (732)
Q Consensus 91 ~p-~~C~vC~~~l--~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~ 167 (732)
+| .||..|.--- --+.|. --....|+.||.--|..|.++-..--..+ -.-+|.. -
T Consensus 222 ~Pn~YCDFclgdsr~nkkt~~------peelvscsdcgrsghpsclqft~nm~~av-------k~yrwqc---------i 279 (336)
T KOG1244|consen 222 QPNPYCDFCLGDSRENKKTGM------PEELVSCSDCGRSGHPSCLQFTANMIAAV-------KTYRWQC---------I 279 (336)
T ss_pred cCCcccceeccccccccccCC------chhhcchhhcCCCCCcchhhhhHHHHHHH-------Hhheeee---------e
Confidence 44 4999998422 112221 22357999999999999999854321111 1335632 1
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
....|+.||.+=.-- +-+-|-.|.+-+|-.|.+
T Consensus 280 eck~csicgtsendd-----qllfcddcdrgyhmycls 312 (336)
T KOG1244|consen 280 ECKYCSICGTSENDD-----QLLFCDDCDRGYHMYCLS 312 (336)
T ss_pred ecceeccccCcCCCc-----eeEeecccCCceeeEecC
Confidence 246788887754321 246799999999999974
No 78
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=75.91 E-value=1.6 Score=50.86 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=29.5
Q ss_pred CCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCCCCCCCC
Q 004734 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICD 216 (732)
Q Consensus 166 ~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cd 216 (732)
+....||+.| ...|+. .+++|.-|+..+|..|...++.- |.
T Consensus 186 f~~~~fC~~~----~~~~l~--~gfrC~~C~~KfHq~Cs~~vp~~----C~ 226 (678)
T KOG0193|consen 186 FFPLAFCDSC----CNKFLF--TGFRCQTCGYKFHQSCSPRVPTS----CV 226 (678)
T ss_pred ccchhhhhhh----cchhhh--cccccCCCCCccccccCCCCCCC----CC
Confidence 3444566544 333433 48999999999999999998865 76
No 79
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=73.08 E-value=1.4 Score=50.66 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=37.5
Q ss_pred CCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCC
Q 004734 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (732)
Q Consensus 165 n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~ 209 (732)
.+...+.|.+|...+-+.|-| |++|.-|..-.|..|...+++
T Consensus 530 tF~~~tsCkvC~mllrGtfYQ---GY~C~~c~~~ahkecl~~vp~ 571 (865)
T KOG2996|consen 530 TFKNTTSCKVCQMLLRGTFYQ---GYKCEKCGADAHKECLGRVPP 571 (865)
T ss_pred eccCCcchHHHHHHhhhhhhc---ceeeeeccccHHHHhccCCCC
Confidence 556789999999999998887 899999999999999988764
No 80
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=72.05 E-value=0.83 Score=53.75 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=71.9
Q ss_pred HHhhhhHHHHHHH-HhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCccccccccccc
Q 004734 50 WRRNINLGWMKAI-ARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAA 128 (732)
Q Consensus 50 ~~r~~~~~w~~~~-~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~v 128 (732)
|.-.+++..|.-. ++.+++.. +-.....|.-.... --..|.||+..=... + ..-..|+.|+++|
T Consensus 234 l~~~~~eRiieelE~~c~kqi~--~~l~~eeglgie~d----edviCDvCrspD~e~-~--------neMVfCd~Cn~cV 298 (893)
T KOG0954|consen 234 LDEGTFERIIEELERRCKKQIN--HALETEEGLGIEYD----EDVICDVCRSPDSEE-A--------NEMVFCDKCNICV 298 (893)
T ss_pred cchHHHHHHHHHHHHHHHHHHH--hhhhhcccceeecc----ccceeceecCCCccc-c--------ceeEEeccchhHH
Confidence 3344455555555 44444422 22223344443321 347999999753310 0 1225999999999
Q ss_pred CccchhhhcC-----CCccce----------------ec---CccceeeeeEeeeec---ccCCC------------CC-
Q 004734 129 HLSCSLSAHK-----DCKCVS----------------MI---GFEHVIHQWSVRWTE---ITDQP------------SE- 168 (732)
Q Consensus 129 H~~C~~~~~~-----~Ck~~~----------------~~---~~~~~~H~W~~~~~~---~~~n~------------~~- 168 (732)
|..|..-..- -|.+-+ +. ....-.|+.-.-||. +. ++ +.
T Consensus 299 HqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHvsCALwIPEVsie-~~ekmePItkfs~Ipes 377 (893)
T KOG0954|consen 299 HQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHVSCALWIPEVSIE-CPEKMEPITKFSHIPES 377 (893)
T ss_pred HHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEeeeeeccceeecc-CHhhcCcccccCCCcHH
Confidence 9999876532 133211 10 111234444334431 10 11 00
Q ss_pred --CCcccccCCCccccCCCCCCceEec--ccccccchhhhcc
Q 004734 169 --ASFCSYCEEPCSGSFLGGSPIWCCL--WCQRLVHVDCHNN 206 (732)
Q Consensus 169 --~~~C~~C~~~c~~~~~~~~~~~~C~--WC~~~vH~~C~~~ 206 (732)
.-.|..|++..|. -.+|. -|...+|.-|.-.
T Consensus 378 RwslvC~LCk~k~GA-------CIqCs~k~C~t~fHv~CA~~ 412 (893)
T KOG0954|consen 378 RWSLVCNLCKVKSGA-------CIQCSNKTCRTAFHVTCAFE 412 (893)
T ss_pred HHHHHHHHhcccCcc-------eEEecccchhhhccchhhhh
Confidence 1259999887654 35777 4999999999854
No 81
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.72 E-value=3.1 Score=33.40 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=28.7
Q ss_pred CCcccccCCCccccCCCCCCceEecccccccchhhhccCC
Q 004734 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (732)
Q Consensus 169 ~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~ 208 (732)
..+|..|++.+-.. -....|.-|+..+|.+|-...-
T Consensus 5 ~~~C~~Cg~~~~~~----dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFKDG----DDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCcccCC----CCEEECCCCCCcccHHHHhhCC
Confidence 57999999988321 1368999999999999997654
No 82
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=69.43 E-value=20 Score=39.21 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC---CcEEEEeccCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP---VQVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p---~qV~dl~~t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++.+|+..+..... .+.+++...|+. ..+|+-.. ..| +++.+.+++...+.||+.|| |++-.+.-++
T Consensus 23 ~~~lvv~~~~~~~~---g~~~~v~~~l~~~~~~~~~~~v~-~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aKa~ 97 (332)
T cd08180 23 KRVLIVTDPFMVKS---GMLDKVTDHLDSSIEVEIFSDVV-PDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAKAI 97 (332)
T ss_pred CeEEEEeCchhhhC---ccHHHHHHHHHhcCcEEEeCCCC-CCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHHHH
Confidence 57788877543321 134444444433 22342111 122 24556677777889999999 5555555443
Q ss_pred ---Hhc-CCCCCCcEEEeeC--CCcchhh
Q 004734 436 ---DKQ-NFVSPPPVAILPA--GTGNDLA 458 (732)
Q Consensus 436 ---~~~-~~~~~ppvaILPl--GTGNDlA 458 (732)
... ...+..|+..+|. |||--..
T Consensus 98 a~~~~~~~~~~~~p~i~VPTtagtgse~t 126 (332)
T cd08180 98 IYFAKKLGKKKKPLFIAIPTTSGTGSEVT 126 (332)
T ss_pred HHHHhCCCCCCCCCEEEeCCCCcchHhhC
Confidence 221 1234578999996 6664443
No 83
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=66.56 E-value=23 Score=39.24 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC----CcEEEEeccCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP----VQVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p----~qV~dl~~t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++.+|+.-+.+-...| ++.++...|.. ..+|+-.. ..| .++.+.+++...+.||+.|| |++-.+.-+
T Consensus 26 ~r~lvVt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SLDDVTKALEELGIEYEIFDEVE-ENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcC--cHHHHHHHHHHcCCeEEEeCCCC-CCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6788887776644333 23344444432 22342111 122 23455667777889999999 655555544
Q ss_pred HHh--------------cCCCCCCcEEEeeC--CCcchhhHh
Q 004734 435 IDK--------------QNFVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 435 l~~--------------~~~~~~ppvaILPl--GTGNDlAR~ 460 (732)
+.- ....+.+|+..+|. |||-..++.
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 102 IAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred HHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 321 01124578889997 777766653
No 84
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=64.52 E-value=25 Score=39.09 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC----cEEEEecc-CCcc-----HHHHHhhhCCCC---eEEEEcCchhHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSST-QGPE-----VGLFLFRKVPHF---RVLVCGGDGTVGW 430 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~----qV~dl~~t-~~p~-----~al~l~r~~~~~---~Ivv~GGDGTV~~ 430 (732)
++++|+..+.-.. .+...+...|... .++.+... ..|. .+.+.+++...+ .||++|| |++..
T Consensus 24 ~rvlvVtd~~v~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~D 98 (355)
T cd08197 24 DKYLLVTDSNVED----LYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVGN 98 (355)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHH
Confidence 5788888755332 2444555555422 22333211 1121 233444444433 6787877 88888
Q ss_pred HHHHHHhcCCCCCCcEEEeeC--CCcch
Q 004734 431 VLNAIDKQNFVSPPPVAILPA--GTGND 456 (732)
Q Consensus 431 VLn~l~~~~~~~~ppvaILPl--GTGND 456 (732)
+.-.+... +....|+..+|. |++.|
T Consensus 99 ~ak~~A~~-~~rgip~I~IPTTlla~~d 125 (355)
T cd08197 99 IAGLLAAL-LFRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHH-hccCCCEEEecCccccccc
Confidence 77665432 124679999998 66766
No 85
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=64.50 E-value=2.2 Score=48.18 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=35.9
Q ss_pred eeeee-EeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCC
Q 004734 151 VIHQW-SVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (732)
Q Consensus 151 ~~H~W-~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~ 209 (732)
|.||. +.. .+..+.+|..|+|.+- |.. -+++|..|...+|-.|..++.-
T Consensus 284 mr~htfi~k------t~~~~~~Cv~C~krIk--fg~--~sLkCRdC~v~~H~~Cr~~l~l 333 (604)
T KOG3564|consen 284 MRLHTFISK------TVIKPENCVPCGKRIK--FGK--LSLKCRDCPVVCHIECRDKLTL 333 (604)
T ss_pred cccchhhHh------hccCcccchhhhhhhh--hhh--cccccccCCeeechhHHhcCCC
Confidence 55554 443 4556789999999863 211 2789999999999999987543
No 86
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=63.00 E-value=32 Score=37.48 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC---CcEEEEeccCCc----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP---VQVVELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p---~qV~dl~~t~~p----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++++|+..+..-.+ +..++...|.. ..+|+....+.. ..+.+.+++...+.||+.|| |++..+.-.+.
T Consensus 24 ~~~liv~~~~~~~~----~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK~ia 98 (332)
T cd07766 24 DRALVVSDEGVVKG----VGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAKAVA 98 (332)
T ss_pred CeEEEEeCCchhhh----HHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHHHHH
Confidence 67888887655442 34444444432 233432211111 12344555556778888887 77777766654
Q ss_pred hcCCCCCCcEEEeeCCCcch
Q 004734 437 KQNFVSPPPVAILPAGTGND 456 (732)
Q Consensus 437 ~~~~~~~ppvaILPlGTGND 456 (732)
-. +.+.+|+..+|.=.|.+
T Consensus 99 ~~-~~~~~p~i~iPTt~~tg 117 (332)
T cd07766 99 AL-LNRGLPIIIVPTTAATG 117 (332)
T ss_pred HH-hcCCCCEEEEeCCCchh
Confidence 32 12368999999744443
No 87
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=61.73 E-value=1.7 Score=31.97 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=13.4
Q ss_pred CcccccccccccCccchhhh
Q 004734 117 FIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 117 ~~~~C~~C~~~vH~~C~~~~ 136 (732)
+.++|+.|++.||..|..-.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S
T ss_pred ceEEeCCCCCcCChhhCCcc
Confidence 34799999999999998754
No 88
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=60.67 E-value=1.3 Score=47.51 Aligned_cols=42 Identities=17% Similarity=0.403 Sum_probs=35.6
Q ss_pred CCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 166 ~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
+..++.|+.|+.-.++.+.. |++|.-|+.++|-+|...+..+
T Consensus 59 ~~~~~~~~~c~~~~~~vl~e---gL~c~~c~~tch~rcr~lv~ld 100 (348)
T KOG4239|consen 59 LLLPTWCDKCGDFIWGVLRE---GLLCIHCKFTCHIRCRMLVDLD 100 (348)
T ss_pred ccccccchhhhHHHHHHHHH---HHhhhhcCCccCHHHHhhhhhh
Confidence 45578999999988887665 8999999999999999887544
No 89
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.48 E-value=5.1 Score=31.08 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=25.2
Q ss_pred cccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhc
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~ 137 (732)
||.+|.+.-. .+..++|+.|+..+|..|+....
T Consensus 1 ~C~vC~~~~~-----------~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 1 YCPVCGQSDD-----------DGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp EBTTTTSSCT-----------TSSEEEBSTTSCEEETTTSTSSH
T ss_pred eCcCCCCcCC-----------CCCeEEcCCCChhhCcccCCCCh
Confidence 6888988322 23457999999999999998753
No 90
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=59.15 E-value=29 Score=38.94 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEec-cCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~-t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+..+.+-...| +++++...|... ++..+.. ...| ..+.+.+++...+.||+.|| |++..+.-.+
T Consensus 27 kr~livtd~~~~~~~g--~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 103 (383)
T cd08186 27 SKVLLVTGKSAYKKSG--AWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKSA 103 (383)
T ss_pred CEEEEEcCccHHhhcC--hHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 6788888776654333 344444444322 2222211 1122 23455666667788999998 6665555444
Q ss_pred Hhc--------------C--CCCCCcEEEeeC--CCcchhhHhh
Q 004734 436 DKQ--------------N--FVSPPPVAILPA--GTGNDLARVL 461 (732)
Q Consensus 436 ~~~--------------~--~~~~ppvaILPl--GTGNDlAR~L 461 (732)
.-. . ..+.+|+..+|. |||-..++.-
T Consensus 104 a~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~a 147 (383)
T cd08186 104 AILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFA 147 (383)
T ss_pred HHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeE
Confidence 210 0 013468888897 8887665543
No 91
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=58.77 E-value=42 Score=37.48 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--c--EEE-Eecc---CCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--Q--VVE-LSST---QGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--q--V~d-l~~t---~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++||.-+.+-... .++.++...|+.. + +|+ +... +.-+++.+++++...+.||++|| |++-.+.-++
T Consensus 26 ~r~livt~~~~~~~~--g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~i 102 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKAI 102 (380)
T ss_pred CeEEEEeCCCchhhc--cHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHHH
Confidence 678888876652222 2455555555432 2 232 2110 11223456677777889999998 5554444443
Q ss_pred Hhc-------------------C-CCCCCcEEEeeC--CCcchhhHh
Q 004734 436 DKQ-------------------N-FVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 436 ~~~-------------------~-~~~~ppvaILPl--GTGNDlAR~ 460 (732)
.-. . ..+..|+..+|. |||--..+.
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 149 (380)
T cd08185 103 AFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPW 149 (380)
T ss_pred HHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCe
Confidence 210 0 113568999996 777665544
No 92
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=58.71 E-value=33 Score=38.31 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC--CcEEEEecc-CCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSST-QGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p--~qV~dl~~t-~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+..+..-. ..+++++...|.. .++..+... ..| +.+.+.+++...+.||++|| |++-.+.-++
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 104 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKAI 104 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHH
Confidence 5677776654432 1244555555543 233222111 112 23455666667788999998 5555444433
Q ss_pred Hh---c------------CCCCCCcEEEeeC--CCcchhhHhh
Q 004734 436 DK---Q------------NFVSPPPVAILPA--GTGNDLARVL 461 (732)
Q Consensus 436 ~~---~------------~~~~~ppvaILPl--GTGNDlAR~L 461 (732)
.- . .....+|+..+|. |||-...+.-
T Consensus 105 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~a 147 (377)
T cd08176 105 GIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINY 147 (377)
T ss_pred HHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcE
Confidence 21 0 0124578999997 7776655443
No 93
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.43 E-value=49 Score=36.52 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EE-EeccCC---ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhc
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VE-LSSTQG---PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~d-l~~t~~---p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
++++|+..+..- ..+.+++...|....+ +. ...... -+++.+.+++...+.||++|| |++..+.-.+...
T Consensus 24 ~~~liv~d~~~~----~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~~ 98 (347)
T cd08172 24 KRPLIVTGPRSW----AAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVADR 98 (347)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHHH
Confidence 678888877662 3567777777744333 11 221111 122445556666788999998 7777776666442
Q ss_pred CCCCCCcEEEeeC--CCcchhhH
Q 004734 439 NFVSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 439 ~~~~~ppvaILPl--GTGNDlAR 459 (732)
..+|+..+|. |||-..++
T Consensus 99 ---~~~p~i~VPTT~gtgse~t~ 118 (347)
T cd08172 99 ---LGVPVITVPTLAATCAAWTP 118 (347)
T ss_pred ---hCCCEEEecCccccCcccce
Confidence 2568888886 56655543
No 94
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=56.73 E-value=26 Score=34.28 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=46.2
Q ss_pred CCCChhhHHHHHHHhhCCCcE-EEEe---ccCCccHHHHHhhhCCC----CeEEEEcCchhHHHHHHHHHhcCCCCCCcE
Q 004734 375 GAQRGDSLRQRLNLLLNPVQV-VELS---STQGPEVGLFLFRKVPH----FRVLVCGGDGTVGWVLNAIDKQNFVSPPPV 446 (732)
Q Consensus 375 G~~~g~~~~~~~~~lL~p~qV-~dl~---~t~~p~~al~l~r~~~~----~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppv 446 (732)
|+.....+.+++...|+...+ |++. ....|+..++++++... ..|.++|+++-+.-|+.++.. .|-|
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~-----~PVI 82 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTT-----LPVI 82 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSS-----S-EE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccC-----CCEE
Confidence 444444566666666665544 5543 33468888888887742 337788999999999999874 4667
Q ss_pred EEeeCCCc
Q 004734 447 AILPAGTG 454 (732)
Q Consensus 447 aILPlGTG 454 (732)
|+ |.-++
T Consensus 83 gv-P~~~~ 89 (150)
T PF00731_consen 83 GV-PVSSG 89 (150)
T ss_dssp EE-EE-ST
T ss_pred Ee-ecCcc
Confidence 76 76554
No 95
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=55.58 E-value=32 Score=37.97 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE--EEEeccCCc----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV--~dl~~t~~p----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++||..+.+- .....++...|+.. .+ |+....+.. +.+.+++++...+.||+.|| |++..+.-.+
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 567777665443 23456666666533 32 332211111 22445555556788999999 6766666655
Q ss_pred HhcCCCCCCcEEEeeC
Q 004734 436 DKQNFVSPPPVAILPA 451 (732)
Q Consensus 436 ~~~~~~~~ppvaILPl 451 (732)
.-. ...|+..+|.
T Consensus 98 a~~---~~~p~i~VPT 110 (345)
T cd08171 98 ADK---LGKPVFTFPT 110 (345)
T ss_pred HHH---cCCCEEEecC
Confidence 432 2468888887
No 96
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=55.28 E-value=46 Score=36.81 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC---CcEEEEecc-CCcc-----HHHHHhhhCC---CCeEEEEcCchhHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP---VQVVELSST-QGPE-----VGLFLFRKVP---HFRVLVCGGDGTVGWV 431 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p---~qV~dl~~t-~~p~-----~al~l~r~~~---~~~Ivv~GGDGTV~~V 431 (732)
++++|+..+.-.. .+.+.+...|+. ..++.+... ..|. .+.+.+++.. .+.||+.|| |++..+
T Consensus 24 ~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D~ 98 (344)
T cd08169 24 DQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATGDV 98 (344)
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHHH
Confidence 5778887754433 245555555532 333333211 1111 2233444433 566888887 777777
Q ss_pred HHHHHhcCCCCCCcEEEeeC--CCcchh
Q 004734 432 LNAIDKQNFVSPPPVAILPA--GTGNDL 457 (732)
Q Consensus 432 Ln~l~~~~~~~~ppvaILPl--GTGNDl 457 (732)
.-.+... +.+..|+..+|. ++++|-
T Consensus 99 ak~vA~~-~~rgip~i~VPTTlla~~ds 125 (344)
T cd08169 99 AGFVAST-LFRGIAFIRVPTTLLAQSDS 125 (344)
T ss_pred HHHHHHH-hccCCcEEEecCCccccccc
Confidence 6665432 124679999998 677773
No 97
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=55.22 E-value=8.6 Score=41.61 Aligned_cols=77 Identities=27% Similarity=0.518 Sum_probs=41.6
Q ss_pred ccccccccccCccchhhhcCCCccce--ecCc----cceeeee-Eeeeeccc-CCCCCCCccccc-CCCccccCCCCCCc
Q 004734 119 HRCSICGAAAHLSCSLSAHKDCKCVS--MIGF----EHVIHQW-SVRWTEIT-DQPSEASFCSYC-EEPCSGSFLGGSPI 189 (732)
Q Consensus 119 ~~C~~C~~~vH~~C~~~~~~~Ck~~~--~~~~----~~~~H~W-~~~~~~~~-~n~~~~~~C~~C-~~~c~~~~~~~~~~ 189 (732)
+.|..|+..| |.- +..|+.-. .... ...+|-+ ...|.++. +.+....+|..| ++... +..
T Consensus 277 y~CP~Ckakv---CsL--P~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~------~~~ 345 (378)
T KOG2807|consen 277 YFCPQCKAKV---CSL--PIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLS------SGR 345 (378)
T ss_pred eeCCcccCee---ecC--CccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCC------CCc
Confidence 5999999765 543 34454322 1111 1223333 22232221 123345689999 33222 237
Q ss_pred eEecccccccchhhhcc
Q 004734 190 WCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 190 ~~C~WC~~~vH~~C~~~ 206 (732)
++|.-||..+=.+|--+
T Consensus 346 y~C~~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 346 YRCESCKNVFCLDCDVF 362 (378)
T ss_pred EEchhccceeeccchHH
Confidence 89999998888888644
No 98
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=54.40 E-value=9.7 Score=35.99 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=7.7
Q ss_pred cCCCCCeeEe
Q 004734 75 VPLAPHTWVL 84 (732)
Q Consensus 75 ~~~~~H~w~~ 84 (732)
-+..+|.|..
T Consensus 32 ~P~~gt~w~~ 41 (130)
T PF12273_consen 32 QPIYGTRWMA 41 (130)
T ss_pred CCcCCceecC
Confidence 4667899987
No 99
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=54.33 E-value=75 Score=35.24 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=50.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEec-cCCc-----cHHHHHhhhCC--CCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSS-TQGP-----EVGLFLFRKVP--HFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~-t~~p-----~~al~l~r~~~--~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+..+.... ..++.++...|....++.+.. ...| +++.+.+++.. .+.||+.|| |++-.+.-.+
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~aK~i 99 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTAKVL 99 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHH
Confidence 6788887654322 125556666664333322211 1122 23455666655 788999998 6665555443
Q ss_pred Hhc---C----------------CCCCCcEEEeeC--CCcchhhHh
Q 004734 436 DKQ---N----------------FVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 436 ~~~---~----------------~~~~ppvaILPl--GTGNDlAR~ 460 (732)
.-. . ..+.+|+..+|. |||-...+.
T Consensus 100 a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 100 AVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 111 0 113468888886 777665554
No 100
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=52.50 E-value=53 Score=36.49 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--c--EEEEeccCCcc-----HHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--Q--VVELSSTQGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--q--V~dl~~t~~p~-----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++++|+.-+.+-. . .+.+.+...|... + +|+-. ...|. .+.+.+++...+.||+.|| |++-.+.-.
T Consensus 24 ~~~lvv~~~~~~~-~--~~~~~v~~~L~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVK-T--GVLDKVIDSLKEAGIEVVIFDGV-EPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhh-C--ccHHHHHHHHHHcCCeEEEECCC-CCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 5788887766654 1 2344444444322 2 23211 11122 2445556656788999998 565555544
Q ss_pred HHhc---------------CCCCCCcEEEeeC--CCcchhhH
Q 004734 435 IDKQ---------------NFVSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 435 l~~~---------------~~~~~ppvaILPl--GTGNDlAR 459 (732)
+.-. ...+..|+..+|. |||--..+
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~ 140 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTP 140 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCC
Confidence 4211 0013568999998 55544333
No 101
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=52.47 E-value=60 Score=36.37 Aligned_cols=93 Identities=16% Similarity=0.265 Sum_probs=49.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCC----CcEEEEeccCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNP----VQVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLN 433 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p----~qV~dl~~t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn 433 (732)
.++++|+.-+..-.. .+.+++...|.. ..+|+-. ...| .++.+.+++...+.||+.|| |++-.+.-
T Consensus 30 ~~~~lvvtd~~~~~~---g~~~~v~~~L~~~g~~~~~~~~v-~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 104 (382)
T PRK10624 30 FKKALIVTDKTLVKC---GVVAKVTDVLDAAGLAYEIYDGV-KPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCK 104 (382)
T ss_pred CCEEEEEeCcchhhC---cchHHHHHHHHHCCCeEEEeCCC-CCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 367888876533321 144455555532 2234211 1222 23556677777788999998 55555553
Q ss_pred HHH---hc--------------CCCCCCcEEEeeC--CCcchhhHh
Q 004734 434 AID---KQ--------------NFVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 434 ~l~---~~--------------~~~~~ppvaILPl--GTGNDlAR~ 460 (732)
++. .. ...+.+|+..+|. |||--..+.
T Consensus 105 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~ 150 (382)
T PRK10624 105 AIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTIN 150 (382)
T ss_pred HHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcce
Confidence 321 10 0123478888996 666555443
No 102
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=52.21 E-value=44 Score=37.28 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE--EEEeccCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV--~dl~~t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++++|+.-+.+-...| ++.++...|+.. .+ |+-.. ..| +++.+.+++...+.||+.|| |++-.+.-+
T Consensus 24 ~r~livt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFG--FLDKVEAYLKEAGIEVEVFEGVE-PDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCC--hHHHHHHHHHHcCCeEEEeCCCC-CCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 5677776554433222 445555555432 22 32111 122 23456667767788999999 555444444
Q ss_pred HH---hc---------------CCCCCCcEEEeeC--CCcchhh
Q 004734 435 ID---KQ---------------NFVSPPPVAILPA--GTGNDLA 458 (732)
Q Consensus 435 l~---~~---------------~~~~~ppvaILPl--GTGNDlA 458 (732)
+. .. ...+..|+..+|. |||--..
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t 143 (375)
T cd08179 100 MWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVT 143 (375)
T ss_pred HHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhC
Confidence 32 00 0112458888886 6665444
No 103
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=51.81 E-value=68 Score=35.10 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEec--cCCccHHHHHhhhCC-CCeEEEEcCchhHHHHHHHHHhcCC
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSS--TQGPEVGLFLFRKVP-HFRVLVCGGDGTVGWVLNAIDKQNF 440 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~--t~~p~~al~l~r~~~-~~~Ivv~GGDGTV~~VLn~l~~~~~ 440 (732)
++++|+..+.. .+++.+.++.... ..++.+.. ....+...+.++... .+.||+.|| |++..+.-.+..
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA~--- 96 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAAF--- 96 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHHh---
Confidence 67888887665 3445555544322 12322221 122334455566553 678888988 777777766654
Q ss_pred CCCCcEEEeeCCCcc
Q 004734 441 VSPPPVAILPAGTGN 455 (732)
Q Consensus 441 ~~~ppvaILPlGTGN 455 (732)
....|+..+|.=.++
T Consensus 97 ~~~~p~i~vPTt~~t 111 (331)
T cd08174 97 LRGIPLSVPTTNLND 111 (331)
T ss_pred hcCCCEEEecCcccc
Confidence 256899999975444
No 104
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=51.62 E-value=12 Score=28.96 Aligned_cols=31 Identities=23% Similarity=0.641 Sum_probs=23.5
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhhcc
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~ 206 (732)
+|.+|++.-... .-+.|.-|.+.+|..|...
T Consensus 1 ~C~vC~~~~~~~-----~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDDG-----DMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTTS-----SEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCCcCCCC-----CeEEcCCCChhhCcccCCC
Confidence 588898822211 2689999999999999864
No 105
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=51.54 E-value=51 Score=36.25 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC-c--EEEEeccCCccH---HHHHhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV-Q--VVELSSTQGPEV---GLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~-q--V~dl~~t~~p~~---al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++|+..+.... .+.+++...|... . +| +......+. +.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a~ 99 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVV-IVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAAY 99 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCeEEE-EeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHHH
Confidence 5788888765533 3556666666432 2 23 222112222 333444445688998988 777777776652
Q ss_pred cCCCCCCcEEEeeCCCcch
Q 004734 438 QNFVSPPPVAILPAGTGND 456 (732)
Q Consensus 438 ~~~~~~ppvaILPlGTGND 456 (732)
...+|+..+|.=.++|
T Consensus 100 ---~~~~p~i~iPTT~~t~ 115 (339)
T cd08173 100 ---KLGIPFISVPTAASHD 115 (339)
T ss_pred ---hcCCCEEEecCcccCC
Confidence 2467899999755543
No 106
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=51.53 E-value=6.9 Score=48.98 Aligned_cols=35 Identities=31% Similarity=0.711 Sum_probs=28.4
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSL 134 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~ 134 (732)
-+..|++|.+--. |. .+..++|+.|+++||..|..
T Consensus 218 ~D~~C~iC~~~~~--~n-------~n~ivfCD~Cnl~VHq~Cyg 252 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC--QN-------SNVIVFCDGCNLAVHQECYG 252 (1051)
T ss_pred CCccceeeccccc--CC-------CceEEEcCCCcchhhhhccC
Confidence 4579999999765 22 24568999999999999998
No 107
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=51.36 E-value=6.8 Score=48.99 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=35.2
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCccce
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVS 144 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~ 144 (732)
.|++|-.|...+|. +++ .|..|.+++|++|...+...|.-..
T Consensus 555 ~P~~c~~c~~~~~~-~~~-----------~c~~c~~~chkkc~~~~~~~~~~~~ 596 (918)
T KOG1453|consen 555 KPAPCRTCETYSWF-MEL-----------ECELCRLVCHKKCLEALKSLCGHER 596 (918)
T ss_pred CCcccccccccchh-hhc-----------ccceeeeeccccchhhccccCcccc
Confidence 49999999999984 223 9999999999999999988885443
No 108
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=48.94 E-value=50 Score=38.15 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=37.3
Q ss_pred cHHHHHhhhCCCCeEEEEcCchhHHHHHH---HHHhcCCCCCCcEEEeeCCCcchhh
Q 004734 405 EVGLFLFRKVPHFRVLVCGGDGTVGWVLN---AIDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 405 ~~al~l~r~~~~~~Ivv~GGDGTV~~VLn---~l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
+.+.+.+++..-+.+++.|||||..-+.. .+.+.+ .+.+|.-||-==-||+.
T Consensus 166 ~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g--~~I~VIGIPKTIDNDI~ 220 (459)
T PTZ00286 166 KVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRK--LNISVVGIPKTIDNDIP 220 (459)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--CCceEEEeccccCCCCC
Confidence 34455556666788999999999976543 333333 35788999999999987
No 109
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=48.90 E-value=7.3 Score=45.90 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=26.4
Q ss_pred cccccCCCCCCCCCCCCcccCCcCccccc--ccccccCccchhhhc
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCS--ICGAAAHLSCSLSAH 137 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~--~C~~~vH~~C~~~~~ 137 (732)
=||||.+-=-+ .+++...|+ .|.++||..|..-+.
T Consensus 7 GCCVCSDErGW---------aeNPLVYCDG~nCsVAVHQaCYGIvq 43 (900)
T KOG0956|consen 7 GCCVCSDERGW---------AENPLVYCDGHNCSVAVHQACYGIVQ 43 (900)
T ss_pred ceeeecCcCCC---------ccCceeeecCCCceeeeehhcceeEe
Confidence 49999975321 245668897 899999999987764
No 110
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=48.66 E-value=63 Score=35.93 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC--Cc--EEEEeccCC----ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQ--VVELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p--~q--V~dl~~t~~----p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+.-+..-.. .+.+++...|.. .+ +|+-..... -+++.+.+++...+.||+.|| |++-.+.-.+
T Consensus 25 ~~~liv~~~~~~~~---~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~i 100 (370)
T cd08192 25 KRPLIVTDPGLAAL---GLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKAV 100 (370)
T ss_pred CeEEEEcCcchhhC---ccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 56777766544221 134455555543 22 342111111 123455666667788999999 6665555443
No 111
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=48.59 E-value=6.2 Score=44.95 Aligned_cols=61 Identities=25% Similarity=0.508 Sum_probs=0.0
Q ss_pred eEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceecCccceeeeeEeeeec
Q 004734 82 WVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTE 161 (732)
Q Consensus 82 w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~ 161 (732)
|...+...-+ |+||.....+... +| ++|.-|+--.|..|++-..++ .....+.--|
T Consensus 161 wD~~~~~n~q---c~vC~~g~~~~~N--rm-------lqC~~C~~~fHq~Chqp~i~~------~l~~D~~~~w------ 216 (464)
T KOG4323|consen 161 WDSGHKVNLQ---CSVCYCGGPGAGN--RM-------LQCDKCRQWYHQACHQPLIKD------ELAGDPFYEW------ 216 (464)
T ss_pred cCccccccce---eeeeecCCcCccc--ee-------eeecccccHHHHHhccCCCCH------hhccCccceE------
Q ss_pred ccCCCCCCCccccc
Q 004734 162 ITDQPSEASFCSYC 175 (732)
Q Consensus 162 ~~~n~~~~~~C~~C 175 (732)
+|++|
T Consensus 217 ---------~C~~C 221 (464)
T KOG4323|consen 217 ---------FCDVC 221 (464)
T ss_pred ---------eehhh
No 112
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=48.39 E-value=68 Score=35.64 Aligned_cols=50 Identities=32% Similarity=0.480 Sum_probs=30.8
Q ss_pred HHHHhhhCCCCeEEEEcCchhHHHHHHHHHhc-------------------CCCCCCcEEEeeC--CCcchh
Q 004734 407 GLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ-------------------NFVSPPPVAILPA--GTGNDL 457 (732)
Q Consensus 407 al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~-------------------~~~~~ppvaILPl--GTGNDl 457 (732)
+.+++++...+.||+.|| |++..+.-.+.-. ...+.+|+..+|. |||--.
T Consensus 69 ~~~~~~~~~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 69 GIRLLREFGPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred HHHHHHhcCcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 556667767788999988 6665555444211 0124578888897 454433
No 113
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.16 E-value=8.8 Score=35.90 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=18.0
Q ss_pred EeeeecccCCCCCCCcccccCCCc
Q 004734 156 SVRWTEITDQPSEASFCSYCEEPC 179 (732)
Q Consensus 156 ~~~~~~~~~n~~~~~~C~~C~~~c 179 (732)
+|+-....|.|..++||..||+.+
T Consensus 55 vegvlglg~dye~psfchncgs~f 78 (160)
T COG4306 55 VEGVLGLGGDYEPPSFCHNCGSRF 78 (160)
T ss_pred eeeeeccCCCCCCcchhhcCCCCC
Confidence 444444557889999999998865
No 114
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=47.89 E-value=67 Score=35.39 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=43.7
Q ss_pred CCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCcc-------HHHHHhhhCCCCeEEEEcC
Q 004734 359 MPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPE-------VGLFLFRKVPHFRVLVCGG 424 (732)
Q Consensus 359 ~p~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~-------~al~l~r~~~~~~Ivv~GG 424 (732)
+|.+ +++|+++---|=...| +..++...|...+++++.-.+ |. .|.+++|+-.-+-|+++||
T Consensus 26 i~~~-~kVLi~YGGGSIKrnG--vydqV~~~Lkg~~~~E~~GVE-PNP~~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 26 IPKD-AKVLIVYGGGSIKKNG--VYDQVVEALKGIEVIEFGGVE-PNPRLETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred cccc-CeEEEEecCccccccc--hHHHHHHHhcCceEEEecCCC-CCchHHHHHHHHHHHHHcCceEEEEecC
Confidence 4555 7888888544433333 778888888888999986543 33 3566777767778899888
No 115
>PRK15138 aldehyde reductase; Provisional
Probab=46.94 E-value=81 Score=35.47 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEec-cCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHH-
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID- 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~-t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~- 436 (732)
++++|+.-+.+=.. ..++.++...|....+..+.. ...| +++.+++++...+.||+.|| |++-.+.-++.
T Consensus 30 ~~~livt~~~~~~~--~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ia~ 106 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKFIAA 106 (387)
T ss_pred CeEEEECCCchHHh--cCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHHHH
Confidence 56777654433221 224556666665444422221 1122 24566777777899999999 33332222221
Q ss_pred --hc---------------CCCCCCcEEEeeC--CCcchhhHh
Q 004734 437 --KQ---------------NFVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 437 --~~---------------~~~~~ppvaILPl--GTGNDlAR~ 460 (732)
.. ...+.+|+..+|. |||-.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~ 149 (387)
T PRK15138 107 AANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAG 149 (387)
T ss_pred HHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCC
Confidence 00 0112468888887 777655443
No 116
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=46.89 E-value=49 Score=36.72 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCc----EEEEeccC-Cc-----cHHHHHhhhCC---CCeEEEEcCchhHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ----VVELSSTQ-GP-----EVGLFLFRKVP---HFRVLVCGGDGTVG 429 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~q----V~dl~~t~-~p-----~~al~l~r~~~---~~~Ivv~GGDGTV~ 429 (732)
.++++|+..+.... .+.+++...|.... ++.+...+ .| ..+.+.+++.. .+.||+.|| |++.
T Consensus 31 ~~~~livtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~ 105 (358)
T PRK00002 31 GKKVAIVTDETVAP----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVIG 105 (358)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHHH
Confidence 36788888655532 36666666665432 22222111 12 12334444443 367888887 7887
Q ss_pred HHHHHHHhcCCCCCCcEEEeeC--CCcch
Q 004734 430 WVLNAIDKQNFVSPPPVAILPA--GTGND 456 (732)
Q Consensus 430 ~VLn~l~~~~~~~~ppvaILPl--GTGND 456 (732)
.+.-.+... +...+|+..+|. ++.+|
T Consensus 106 D~aK~iA~~-~~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 106 DLAGFAAAT-YMRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred HHHHHHHHH-hcCCCCEEEcCchhhhccc
Confidence 777666421 124678999997 44444
No 117
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=46.02 E-value=14 Score=33.07 Aligned_cols=33 Identities=30% Similarity=0.712 Sum_probs=22.9
Q ss_pred CCCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 167 ~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
.....|.+|++.++.+. +---=|+..||..|..
T Consensus 76 ~~~~~C~vC~k~l~~~~------f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSV------FVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCce------EEEeCCCeEEeccccc
Confidence 34678999999998642 1122256889999974
No 118
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=44.94 E-value=77 Score=35.38 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEec-cCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~-t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+..+..-.. .+++++...|... ++..+.. ...| +++.+.+++...+.||+.|| |++-.+.-++
T Consensus 27 ~~~lvvt~~~~~~~---g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~i 102 (374)
T cd08189 27 KKVLIVTDKGLVKL---GLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKAI 102 (374)
T ss_pred CeEEEEeCcchhhc---ccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHHH
Confidence 67888876544321 1445555555432 2221211 1122 24566777777888999998 5555444433
Q ss_pred H---hcC-------------CCCCCcEEEeeC--CCcchhhH
Q 004734 436 D---KQN-------------FVSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 436 ~---~~~-------------~~~~ppvaILPl--GTGNDlAR 459 (732)
. ... ..+.+|+..+|. |||-...+
T Consensus 103 a~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~ 144 (374)
T cd08189 103 AARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTI 144 (374)
T ss_pred HHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCC
Confidence 1 110 012368888886 56654443
No 119
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=44.83 E-value=4.9 Score=38.82 Aligned_cols=17 Identities=41% Similarity=0.687 Sum_probs=13.3
Q ss_pred EEcCchhHHHHHHHHHh
Q 004734 421 VCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 421 v~GGDGTV~~VLn~l~~ 437 (732)
-.|||||++|+-+.-.+
T Consensus 130 gdGGDGT~hW~Yd~QEd 146 (180)
T PLN00180 130 GDGGDGTGHWVYERQED 146 (180)
T ss_pred ccCCCCceeeEeehHHH
Confidence 46999999999765443
No 120
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=44.81 E-value=18 Score=43.27 Aligned_cols=71 Identities=25% Similarity=0.438 Sum_probs=44.9
Q ss_pred CCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCCC----CCCCCCCCCCCeeeCCCceeeccccccCCc
Q 004734 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNET----GDICDLGPFRRLILSPLYVKELNHTLAGGI 241 (732)
Q Consensus 166 ~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~~----~~~CdlG~~r~~IlpP~~i~~~~~~~~~~~ 241 (732)
++....|++|..+=..--. +-.-|--|+..||..|...+.-.. ...|-|| |-||-.+++- .||.
T Consensus 268 ~dedviCDvCrspD~e~~n---eMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg-----~~ppCvLCPk----kGGa 335 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEAN---EMVFCDKCNICVHQACYGILEVPEGPWLCRTCALG-----IEPPCVLCPK----KGGA 335 (893)
T ss_pred ccccceeceecCCCccccc---eeEEeccchhHHHHhhhceeecCCCCeeehhcccc-----CCCCeeeccc----cCCc
Confidence 3567899999887322222 257899999999999987642111 2459999 5555444432 3666
Q ss_pred ccccccc
Q 004734 242 LSSITHG 248 (732)
Q Consensus 242 ~~~i~~~ 248 (732)
+++...+
T Consensus 336 mK~~~sg 342 (893)
T KOG0954|consen 336 MKPTKSG 342 (893)
T ss_pred ccccCCC
Confidence 6655444
No 121
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=44.80 E-value=40 Score=37.22 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCc----EEEEeccCCcc---HHHHHhhhCCCCeEEEEcCchhHHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ----VVELSSTQGPE---VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~q----V~dl~~t~~p~---~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++.+|+..+.+-. ...+++...|.... ++.+......+ .+.+.+++...+.||++|| |++..+.-.+.
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~ia 97 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAVA 97 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHH
Confidence 5677777655543 34455555554322 22221110112 2455666667788999998 77777666664
Q ss_pred hcCCCCCCcEEEeeC--CCcchhh
Q 004734 437 KQNFVSPPPVAILPA--GTGNDLA 458 (732)
Q Consensus 437 ~~~~~~~ppvaILPl--GTGNDlA 458 (732)
.. ...|+..+|. |||-...
T Consensus 98 ~~---~~~p~i~VPTtagtgse~t 118 (349)
T cd08550 98 DR---LDKPIVIVPTIASTCAASS 118 (349)
T ss_pred HH---cCCCEEEeCCccccCcccc
Confidence 32 3568999997 5554433
No 122
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=43.75 E-value=47 Score=35.17 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=45.3
Q ss_pred HHHHHHhhCCCcE-EE--EeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCc
Q 004734 383 RQRLNLLLNPVQV-VE--LSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTG 454 (732)
Q Consensus 383 ~~~~~~lL~p~qV-~d--l~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTG 454 (732)
.+++..+-.+..+ |+ +..+..+..|++.+.+...+||+-.||..|+.+-+..|.+......-.+ |+|.|--
T Consensus 106 ~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~-Im~GgGV 179 (248)
T PRK11572 106 MRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPI-IMAGAGV 179 (248)
T ss_pred HHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCE-EEeCCCC
Confidence 3344444445444 32 2234567788888888888999999999998887777765421112234 8887643
No 123
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.74 E-value=12 Score=30.21 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=28.2
Q ss_pred CccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 92 p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
..-|.+|.+-+.. ...++.|..|+...|..|...+
T Consensus 5 ~~~C~~Cg~~~~~----------~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKFKD----------GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcccC----------CCCEEECCCCCCcccHHHHhhC
Confidence 3679999987742 2456899999999999999875
No 124
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=43.69 E-value=84 Score=34.55 Aligned_cols=82 Identities=12% Similarity=0.202 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE--EEEeccC-Cc-----cHHHHHhhhCC---CCeEEEEcCchhHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQ-GP-----EVGLFLFRKVP---HFRVLVCGGDGTVGW 430 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV--~dl~~t~-~p-----~~al~l~r~~~---~~~Ivv~GGDGTV~~ 430 (732)
++++|+..+..-. .+.+++...|+.. .+ +.+...+ .| +.+.+.+++.. .+.||+.|| |++..
T Consensus 21 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 95 (344)
T TIGR01357 21 SKLVIITDETVAD----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVVGD 95 (344)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHHHH
Confidence 6788887655432 2556666666532 22 2232111 11 12334455543 367888888 77777
Q ss_pred HHHHHHhcCCCCCCcEEEeeC
Q 004734 431 VLNAIDKQNFVSPPPVAILPA 451 (732)
Q Consensus 431 VLn~l~~~~~~~~ppvaILPl 451 (732)
+.-.+... +....|+..+|.
T Consensus 96 ~aK~iA~~-~~~~~p~i~VPT 115 (344)
T TIGR01357 96 LAGFVAAT-YMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHH-HccCCCEEEecC
Confidence 76665421 124678999997
No 125
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=42.56 E-value=1.9e+02 Score=30.37 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=53.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC-CcEEEEeccCCccHHHHHhhhC--C---CCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP-VQVVELSSTQGPEVGLFLFRKV--P---HFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p-~qV~dl~~t~~p~~al~l~r~~--~---~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
+|++.|+|+|.|.|+...++-....+... ..|. +..++...+-.+|.+.. + ..++.|.++| ++. .++.+.+
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~-lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~~~e 77 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVA-LIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILEDAYE 77 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEE-EEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHHHHH
Confidence 47999999999999876655555555543 3443 33345455566776554 1 2345555544 333 3333332
Q ss_pred cCCCCCCcEEEeeC-CCcchhhHh
Q 004734 438 QNFVSPPPVAILPA-GTGNDLARV 460 (732)
Q Consensus 438 ~~~~~~ppvaILPl-GTGNDlAR~ 460 (732)
....+...+.++=+ |++|-++..
T Consensus 78 ~a~~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 78 AAEASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHHhcCCCEEEEeCCCCCchhHHH
Confidence 11112346777777 888877654
No 126
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=42.27 E-value=82 Score=34.86 Aligned_cols=87 Identities=20% Similarity=0.127 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccH---HHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCC
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEV---GLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNF 440 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~---al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~ 440 (732)
++++||..+.+...-++++...++..- ...++ +......+. +.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA~--- 108 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAAY--- 108 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHHHH---
Confidence 578888887765432333333333221 12223 221112222 333444445678888888 788877766642
Q ss_pred CCCCcEEEeeCCCcch
Q 004734 441 VSPPPVAILPAGTGND 456 (732)
Q Consensus 441 ~~~ppvaILPlGTGND 456 (732)
....|+..+|.=-++|
T Consensus 109 ~rgip~I~IPTT~~td 124 (350)
T PRK00843 109 RLGIPFISVPTAASHD 124 (350)
T ss_pred hcCCCEEEeCCCccCC
Confidence 2467899999754444
No 127
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=41.78 E-value=14 Score=46.26 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCCCCcccccCCCccccCCCCCCceEecccccccchhhhcc-CCCCC---CCCCCCCCCCC
Q 004734 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN-MSNET---GDICDLGPFRR 222 (732)
Q Consensus 166 ~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~-~~~~~---~~~CdlG~~r~ 222 (732)
+..+++|++|.+.|..-... .+.|--|+..||-+|... ..++- ...|-+.+.+.
T Consensus 216 ~~~D~~C~iC~~~~~~n~n~---ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~ 273 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQNSNV---IVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP 273 (1051)
T ss_pred cCCCccceeecccccCCCce---EEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc
Confidence 46678999999998764333 789999999999999972 22211 24577777665
No 128
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=41.77 E-value=80 Score=35.26 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--c--EEEEeccCC----ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--Q--VVELSSTQG----PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--q--V~dl~~t~~----p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++||..+.+-. .| +++++...|... . +|+-..... -+++.+.+++...+.||+.|| |++-.+.-++
T Consensus 24 ~r~livt~~~~~~-~g--~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKai 99 (375)
T cd08194 24 KRPLIVTDKVMVK-LG--LVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKAI 99 (375)
T ss_pred CeEEEEcCcchhh-cc--hHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 5788887665542 12 445566666432 2 232111111 123555666667788999998 6665555444
Q ss_pred Hh---c-----------C-CCCCCcEEEeeC--CCcchh
Q 004734 436 DK---Q-----------N-FVSPPPVAILPA--GTGNDL 457 (732)
Q Consensus 436 ~~---~-----------~-~~~~ppvaILPl--GTGNDl 457 (732)
.- . . .....|+..+|. |||--.
T Consensus 100 a~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~ 138 (375)
T cd08194 100 AVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEV 138 (375)
T ss_pred HHHHhCCCCHHHHhCcccccCCCCCEEEECCCCcccccc
Confidence 21 0 0 123568888886 555443
No 129
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=41.37 E-value=1.2e+02 Score=33.68 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCc-----cHHHHHhhhC---CCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGP-----EVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p-----~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+.-+.-- ..++...++.......+|+-. ...| +.+.+.+++. ..+.||++|| |++-.+.-++
T Consensus 26 ~~~lvvtd~~~~---~~~v~~~L~~~g~~~~~f~~v-~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~AKai 100 (347)
T cd08184 26 DPAVFFVDDVFQ---GKDLISRLPVESEDMIIWVDA-TEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG-GSTLDVAKAV 100 (347)
T ss_pred CeEEEEECcchh---hhHHHHHHHhcCCcEEEEcCC-CCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-cHHHHHHHHH
Confidence 567776632221 245666655433233445311 1222 2355667766 6688999998 4444443333
Q ss_pred H---hc----------C--CCCCCcEEEeeC--CCcchhhHh
Q 004734 436 D---KQ----------N--FVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 436 ~---~~----------~--~~~~ppvaILPl--GTGNDlAR~ 460 (732)
. .. . ..+.+|+..+|. |||--..+.
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~ 142 (347)
T cd08184 101 SNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRT 142 (347)
T ss_pred HHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCc
Confidence 1 10 0 012457888896 777655443
No 130
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=41.32 E-value=98 Score=27.43 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=21.7
Q ss_pred ccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 93 ~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
+.|.+|.+.|..+... .. -||-++|..|..+
T Consensus 79 ~~C~vC~k~l~~~~f~-----------~~-p~~~v~H~~C~~r 109 (109)
T PF10367_consen 79 TKCSVCGKPLGNSVFV-----------VF-PCGHVVHYSCIKR 109 (109)
T ss_pred CCccCcCCcCCCceEE-----------Ee-CCCeEEecccccC
Confidence 5799999998643321 22 3568999999853
No 131
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=41.01 E-value=14 Score=40.24 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEe--eCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhh
Q 004734 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAIL--PAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAA 487 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaIL--PlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~ 487 (732)
.|.|+.+|||||.=-...-+.. ...|.|||= |.|+--- |-.+..|++ +....|..+..+.
T Consensus 106 aD~VisvGGDGTfL~Aasrv~~---~~~PViGvNtDP~~Seg~----lcL~~~~~~-----n~~~al~k~~sgn 167 (395)
T KOG4180|consen 106 ADMVISVGGDGTFLLAASRVID---DSKPVIGVNTDPTGSEGH----LCLPDKYPS-----NPAGALCKLTSGN 167 (395)
T ss_pred hhEEEEecCccceeehhhhhhc---cCCceeeecCCCCcCcce----EeccccCCC-----CcHHHHHHHHhcc
Confidence 3679999999999877774433 256778874 4444332 234455553 2344555554443
No 132
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=40.20 E-value=77 Score=35.48 Aligned_cols=94 Identities=26% Similarity=0.332 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC--CcEEEEec-cCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p--~qV~dl~~-t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++.+|+.-+.+....+ ++.++...|.. .++..+.. ...| .++.+++++...+.||+.|| |++-.+.-++
T Consensus 29 ~r~livt~~~~~~~~~--~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 105 (382)
T cd08187 29 KKVLLVYGGGSIKKNG--LYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKAI 105 (382)
T ss_pred CEEEEEeCCcHHHhcC--cHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHHH
Confidence 5777776665553322 44555555543 23322211 1122 23566777777889999999 5555555443
Q ss_pred Hhc---------------CCCCCCcEEEeeC--CCcchhhHh
Q 004734 436 DKQ---------------NFVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 436 ~~~---------------~~~~~ppvaILPl--GTGNDlAR~ 460 (732)
.-. .....+|+..+|. |||--..+.
T Consensus 106 a~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~ 147 (382)
T cd08187 106 AAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGG 147 (382)
T ss_pred HhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCC
Confidence 211 0023568888896 676554443
No 133
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=40.05 E-value=17 Score=27.73 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=16.9
Q ss_pred ccccCCCccccCCCCCCceEec--ccccccchhhhccCCC
Q 004734 172 CSYCEEPCSGSFLGGSPIWCCL--WCQRLVHVDCHNNMSN 209 (732)
Q Consensus 172 C~~C~~~c~~~~~~~~~~~~C~--WC~~~vH~~C~~~~~~ 209 (732)
|..|.+.. . .|.+|. -|...+|..|......
T Consensus 1 C~~C~~iv----~---~G~~C~~~~C~~r~H~~C~~~y~r 33 (43)
T PF08746_consen 1 CEACKEIV----T---QGQRCSNRDCNVRLHDDCFKKYFR 33 (43)
T ss_dssp -TTT-SB-----S---SSEE-SS--S--EE-HHHHHHHTT
T ss_pred CcccchhH----e---eeccCCCCccCchHHHHHHHHHHh
Confidence 56666543 2 289999 6999999999976543
No 134
>PLN02564 6-phosphofructokinase
Probab=39.58 E-value=63 Score=37.52 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=37.2
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHH---HHHhcCCCCCCcEEEeeCCCcchhh
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLN---AIDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn---~l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
.+.+.+.+++..-+.++++|||||..-+.. .+.+.+ -+.+|.-||-==-||+.
T Consensus 165 ~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g--~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 165 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRG--LKVAVAGIPKTIDNDIP 220 (484)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcC--CCceEEEecccccCCCc
Confidence 344556666667788999999999976533 223332 24568888988899987
No 135
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=39.50 E-value=10 Score=28.93 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=17.2
Q ss_pred ccccCCCCCCCCCCCCcccCCcCccccc--ccccccCccchhhh
Q 004734 95 CCVCLKSMSPSQTLGPMVASDSFIHRCS--ICGAAAHLSCSLSA 136 (732)
Q Consensus 95 C~vC~~~l~~~qg~g~~~~~~~~~~~C~--~C~~~vH~~C~~~~ 136 (732)
|.+|.+.+. ||. +|+ .|+...|..|..+-
T Consensus 1 C~~C~~iv~--~G~-----------~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVT--QGQ-----------RCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-S--SSE-----------E-SS--S--EE-HHHHHHH
T ss_pred CcccchhHe--eec-----------cCCCCccCchHHHHHHHHH
Confidence 788998876 564 999 69999999999764
No 136
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=38.16 E-value=72 Score=35.17 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=45.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC----cEEEEeccC-Cc--cH---HHHHhhhCC---CCeEEEEcCchhHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQ-GP--EV---GLFLFRKVP---HFRVLVCGGDGTVGW 430 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~----qV~dl~~t~-~p--~~---al~l~r~~~---~~~Ivv~GGDGTV~~ 430 (732)
++++|+..+.... .+.+++...|... .++.+...+ .| +. +.+.+++.. .+.||+.|| |++..
T Consensus 25 ~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D 99 (345)
T cd08195 25 SKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVVGD 99 (345)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHHHh
Confidence 6788888766543 2555666666432 223332111 11 22 334444443 367888887 77777
Q ss_pred HHHHHHhcCCCCCCcEEEeeC
Q 004734 431 VLNAIDKQNFVSPPPVAILPA 451 (732)
Q Consensus 431 VLn~l~~~~~~~~ppvaILPl 451 (732)
+.-.+... +.+.+|+..+|.
T Consensus 100 ~ak~vA~~-~~rgip~i~VPT 119 (345)
T cd08195 100 LAGFVAAT-YMRGIDFIQIPT 119 (345)
T ss_pred HHHHHHHH-HhcCCCeEEcch
Confidence 76665421 124678989996
No 137
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=37.56 E-value=15 Score=26.92 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=13.0
Q ss_pred ceEecccccccchhhhccC
Q 004734 189 IWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 189 ~~~C~WC~~~vH~~C~~~~ 207 (732)
-++|..|...||.+|....
T Consensus 4 ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEE-SSS--EEEHHHHT-S
T ss_pred eEEeCCCCCcCChhhCCcc
Confidence 5799999999999998643
No 139
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=37.49 E-value=97 Score=34.11 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=38.0
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhh
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
.+.+.+.+++..-+.+++.|||||+.-+ +.|.+. ..+|--+|-==-||+.
T Consensus 83 ~~~~~~~l~~~~Id~LivIGGdgS~~~a-~~L~~~----gi~vigiPkTIDNDl~ 132 (324)
T TIGR02483 83 DDKIVANLKELGLDALIAIGGDGTLGIA-RRLADK----GLPVVGVPKTIDNDLE 132 (324)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHH-HHHHhc----CCCEEeeccccCCCCc
Confidence 4456666677777899999999999654 556552 3778889988899996
No 140
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=37.05 E-value=24 Score=40.11 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCccccccCCCCCCCCCCCCcccCCc-CcccccccccccCccchhhhcCCCccc
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDS-FIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~-~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
.|.||+-|.-.|..+-- .++.+ .=+.|++|+-.+|..|.-+-..-+.+.
T Consensus 122 ~~gFC~~C~C~iC~kfD----~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~ 171 (446)
T PF07227_consen 122 EPGFCRRCMCCICSKFD----DNKNTCSWIGCDVCGHWCHLDCALRHELIGTGP 171 (446)
T ss_pred CCCccccCCccccCCcc----cCCCCeeEEeccCCCceehhhhhcccccccCCc
Confidence 56777766655553210 01111 125899999999999998755444443
No 142
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=36.12 E-value=1.2e+02 Score=33.84 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=47.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE-EEEeccCCcc----HHHHHhhhCCCCeEEEEcCchhHHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV-VELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV-~dl~~t~~p~----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++++||.-+..- ..+.+++...|... .+ |+....+.+. .+.+.+++...+.||+.|| |++..+.-.+.
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 104 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAVA 104 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHHH
Confidence 567777654432 23666677666543 22 3322212222 2345556666788999999 66666666654
Q ss_pred hcCCCCCCcEEEeeC
Q 004734 437 KQNFVSPPPVAILPA 451 (732)
Q Consensus 437 ~~~~~~~ppvaILPl 451 (732)
-. ..+|+..+|.
T Consensus 105 ~~---~~~p~i~IPT 116 (366)
T PRK09423 105 DY---LGVPVVIVPT 116 (366)
T ss_pred HH---cCCCEEEeCC
Confidence 32 3578999997
No 143
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=36.11 E-value=1.4e+02 Score=33.21 Aligned_cols=87 Identities=24% Similarity=0.276 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC----cEEEEeccCCcc-----HHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~----qV~dl~~t~~p~-----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++++|+.-+.+. ...++...|... .+|++. ..|. ++.+++++...+.||+.|| |++-.+.-+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~--~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVA--GEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCC--CCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHH
Confidence 578888776554 444555555432 234432 2222 2455666667788999998 655555444
Q ss_pred HHhc------------------CC-CCCCcEEEeeC--CCcchhhH
Q 004734 435 IDKQ------------------NF-VSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 435 l~~~------------------~~-~~~ppvaILPl--GTGNDlAR 459 (732)
+.-. .. .+..|+..+|. |||--..+
T Consensus 94 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 94 IAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred HHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 3210 00 13468888886 56655444
No 144
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=35.16 E-value=80 Score=36.31 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=36.9
Q ss_pred cHHHHHhhhCCCCeEEEEcCchhHHHHHHH---HHhcCCCCCCcEEEeeCCCcchhh
Q 004734 405 EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA---IDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 405 ~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~---l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
+.+.+.+++..-+.+++.|||||+.-+..- +.+.+ ...+|.-||-==-||+.
T Consensus 162 ~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g--~~I~VIGIPKTIDNDi~ 216 (443)
T PRK06830 162 EEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRG--LKISVIGIPKTIDNDIN 216 (443)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhC--CCceEEEeccccCCCCc
Confidence 445555666667889999999999766432 22232 24788888988899986
No 145
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.98 E-value=57 Score=36.17 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=21.0
Q ss_pred ccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 93 ~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
..|.+|.|.-.. |..++=--|+=..|..|++.
T Consensus 230 ~~CaIClEdY~~-----------GdklRiLPC~H~FH~~CIDp 261 (348)
T KOG4628|consen 230 DTCAICLEDYEK-----------GDKLRILPCSHKFHVNCIDP 261 (348)
T ss_pred ceEEEeeccccc-----------CCeeeEecCCCchhhccchh
Confidence 489999996431 12234456777888888765
No 146
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=34.71 E-value=1.9e+02 Score=32.30 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=31.6
Q ss_pred HHHHhhhCCCCeEEEEcCchhHHHHHHHH---Hhc-----------CC-CCCCcEEEeeC--CCcchhhH
Q 004734 407 GLFLFRKVPHFRVLVCGGDGTVGWVLNAI---DKQ-----------NF-VSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 407 al~l~r~~~~~~Ivv~GGDGTV~~VLn~l---~~~-----------~~-~~~ppvaILPl--GTGNDlAR 459 (732)
+.+.+++...+.||+.|| |++-.+.-++ ... .. .+.+|+..+|. |||--.++
T Consensus 77 ~~~~~~~~~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 77 GAELYLENGCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHHHhcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 456667667788999998 5555555332 110 00 12468888897 77755554
No 147
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=34.53 E-value=1.5e+02 Score=33.47 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 406 ~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++.+++++...+.||+.|| |++-.+.-.+
T Consensus 69 ~~~~~~~~~~~D~IIaiGG-GS~iD~AK~i 97 (398)
T cd08178 69 KGLELMNSFKPDTIIALGG-GSPMDAAKIM 97 (398)
T ss_pred HHHHHHHhcCCCEEEEeCC-ccHHHHHHHH
Confidence 3556667767789999999 5555554443
No 148
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=34.43 E-value=1.1e+02 Score=33.45 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC----cEEEEeccCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~----qV~dl~~t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++++||..+..-...+ +++...|... .+++-.....| +++.+.+++ ..+.||+.|| |++..+.-.
T Consensus 25 ~kvlivtd~~~~~~~~----~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~aK~ 98 (332)
T cd08549 25 SKIMIVCGNNTYKVAG----KEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLVKF 98 (332)
T ss_pred CcEEEEECCcHHHHHH----HHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHHHH
Confidence 5788888766643323 4444444332 22221111111 123344555 5678999998 777777766
Q ss_pred HHhcCCCCCCcEEEeeCC
Q 004734 435 IDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 435 l~~~~~~~~ppvaILPlG 452 (732)
+.- ....|+..+|.=
T Consensus 99 iA~---~~gip~I~VPTT 113 (332)
T cd08549 99 VSF---KVGKPFISVPTA 113 (332)
T ss_pred HHH---HcCCCEEEeCCC
Confidence 642 246789999964
No 149
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=33.79 E-value=19 Score=38.81 Aligned_cols=83 Identities=22% Similarity=0.470 Sum_probs=47.4
Q ss_pred ccccccccccCccchhhhcCCCccceec---C---ccceeeee-Eeeeeccc-CCCCCCCcccccCCCccc----cCCC-
Q 004734 119 HRCSICGAAAHLSCSLSAHKDCKCVSMI---G---FEHVIHQW-SVRWTEIT-DQPSEASFCSYCEEPCSG----SFLG- 185 (732)
Q Consensus 119 ~~C~~C~~~vH~~C~~~~~~~Ck~~~~~---~---~~~~~H~W-~~~~~~~~-~n~~~~~~C~~C~~~c~~----~~~~- 185 (732)
+.|.+|+..| |.- +..|.+-+.. . .....|-+ ...|++.. |..+.++-|.+|..++.. +|..
T Consensus 309 y~CP~CktkV---CsL--Pi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~ 383 (421)
T COG5151 309 YECPVCKTKV---CSL--PISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDES 383 (421)
T ss_pred eeCCccccee---ecC--CccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCccccc
Confidence 5999999766 543 4456544321 0 01122222 22333322 233456789999987642 2211
Q ss_pred -CCCceEecccccccchhhhcc
Q 004734 186 -GSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 186 -~~~~~~C~WC~~~vH~~C~~~ 206 (732)
.+..|+|.-|+.++-.+|--+
T Consensus 384 ~ss~rY~Ce~CK~~FC~dCdvf 405 (421)
T COG5151 384 TSSGRYQCELCKSTFCSDCDVF 405 (421)
T ss_pred ccccceechhhhhhhhhhhHHH
Confidence 123799999999999998654
No 150
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=33.17 E-value=1.5e+02 Score=33.14 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEec-cCCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSS-TQGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~-t~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
.++++|+.-+..-.. .++.++...|... .+..+.. ...| .++.+.+++...+.||+.|| |++-.+.-+
T Consensus 29 ~~r~lvvt~~~~~~~---g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aKa 104 (379)
T TIGR02638 29 FKKALVVTDKDLIKF---GVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAKA 104 (379)
T ss_pred CCEEEEEcCcchhhc---cchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 367888876543221 1445555555432 2211111 1122 22556667767788999999 555544433
Q ss_pred HH---hcC--------------CCCCCcEEEeeC--CCcchhhHh
Q 004734 435 ID---KQN--------------FVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 435 l~---~~~--------------~~~~ppvaILPl--GTGNDlAR~ 460 (732)
+. ... ..+.+|+..+|. |||-...+.
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~ 149 (379)
T TIGR02638 105 IGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTIN 149 (379)
T ss_pred HHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCE
Confidence 21 110 123578888887 665544433
No 151
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=33.03 E-value=16 Score=37.40 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=36.5
Q ss_pred ccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCC
Q 004734 400 STQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 400 ~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlG 452 (732)
.+..+..|++.+.+...++|+-.||..++.+-++.|.+.-......|-|+|.|
T Consensus 125 ~~~d~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~Gg 177 (201)
T PF03932_consen 125 EVPDPEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGG 177 (201)
T ss_dssp GSSTHHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEES
T ss_pred HhCCHHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 34557778887777788999999999888766666644311123467899987
No 152
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=32.71 E-value=1.6e+02 Score=32.42 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=39.1
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhH
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR 459 (732)
.+.+.+.+++..-+.+++.|||||+.-+. .|.+. ..+|--+|-==-||+.-
T Consensus 81 ~~~~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~----~i~vigiPkTIDNDi~g 131 (317)
T cd00763 81 QAKAIEQLKKHGIDALVVIGGDGSYMGAM-RLTEH----GFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHHH-HHHHc----CCCEEEecccccCCCCC
Confidence 34456667777778999999999987664 45553 47888899999999873
No 153
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=32.11 E-value=12 Score=43.12 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=38.4
Q ss_pred eeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCC
Q 004734 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (732)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~ 209 (732)
-.|-|.+- | -++.+|.+=.+-|..-|...-.--+|.-|+..||..|..++.+
T Consensus 168 gEHvWlet------n-vsgd~CYvGE~~C~~r~~kS~~rRkCAaCkIVvHT~CieqLeK 219 (1004)
T KOG0782|consen 168 GEHVWLET------N-VSGDECYVGEKDCRVRFAKSGERRKCAACKIVVHTNCIEQLEK 219 (1004)
T ss_pred ceeEEEec------c-cCCceeeechHHHHHHHhhhhhhccceeeeEEEechHHHHHHH
Confidence 67999884 2 2357999888888754432112469999999999999988764
No 154
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=31.75 E-value=24 Score=33.58 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=11.1
Q ss_pred CCeEEEEcCchhHH
Q 004734 416 HFRVLVCGGDGTVG 429 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~ 429 (732)
..|||+||||||-.
T Consensus 85 gQRlIvsGGegtss 98 (160)
T PF12219_consen 85 GQRLIVSGGEGTSS 98 (160)
T ss_dssp G-EEEEESSSSSSG
T ss_pred ccEEEEeCCCCccc
Confidence 35899999999854
No 155
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=31.50 E-value=2.1e+02 Score=32.07 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE--EEEeccCCcc----HHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV--~dl~~t~~p~----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+..+.... ..++.++...|... ++ |+-.....|. ++.+.+++...+.||+.|| |++-.+.-.+
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~i 98 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKIA 98 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHHH
Confidence 5778887655433 12455555555432 22 3211111122 2345566666788999998 6665555444
Q ss_pred Hhc--------------C-CCCCCcEEEeeC--CCcchhhHh
Q 004734 436 DKQ--------------N-FVSPPPVAILPA--GTGNDLARV 460 (732)
Q Consensus 436 ~~~--------------~-~~~~ppvaILPl--GTGNDlAR~ 460 (732)
.-. . ..+..|+..+|. |||-...+.
T Consensus 99 a~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 99 GLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred HHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 210 0 012468888886 566555443
No 156
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=31.05 E-value=1.4e+02 Score=32.94 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=36.9
Q ss_pred cHHHHHhhhCCCCeEEEEcCchhHHHHHHH---HHhcCCCCCCcEEEeeCCCcchhh
Q 004734 405 EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA---IDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 405 ~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~---l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
+.+.+.+++..-+.+++.|||||+.-+..- +.+.+ ...+|--+|-=--||+.
T Consensus 82 ~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~--~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 82 AKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKY--QGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcC--CCccEEEeeecccCCCc
Confidence 345666677677889999999999765332 22222 35788889976699987
No 157
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=30.80 E-value=38 Score=25.82 Aligned_cols=30 Identities=27% Similarity=0.693 Sum_probs=23.0
Q ss_pred cccccCCCccccCCCCCCceEeccc-ccccchhhhcc
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWC-QRLVHVDCHNN 206 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC-~~~vH~~C~~~ 206 (732)
.|+.|++.+.+. -|+|.-| ...++.+|...
T Consensus 2 ~Cd~C~~~i~G~------ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGV------RYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCC------eEECCCCCCccchHHhhCc
Confidence 699999965442 5899999 57788888753
No 158
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=30.77 E-value=23 Score=39.55 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhh
Q 004734 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAA 487 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~ 487 (732)
.|-||..||||||=-+..-.-+ .-|||--.-+|| ||+=.-+ +.++..+.|.++.++.
T Consensus 169 ~D~iItLGGDGTvL~aS~LFq~----~VPPV~sFslGs-------lGFLtpf----~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 169 FDLIITLGGDGTVLYASSLFQR----SVPPVLSFSLGS-------LGFLTPF----PFANFQEQLARVLNGR 225 (409)
T ss_pred eeEEEEecCCccEEEehhhhcC----CCCCeEEeecCC-------ccccccc----cHHHHHHHHHHHhcCc
Confidence 3669999999999776554433 347877777774 4432212 1245666677776665
No 159
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=29.79 E-value=93 Score=34.16 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCc--EEEEeccCCcc----HHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ--VVELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~q--V~dl~~t~~p~----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++|+..+.. .+.+.+++...|.... +|+-.....+. .+.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 24 ~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia~ 98 (337)
T cd08177 24 SRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIAL 98 (337)
T ss_pred CeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 56777754322 2226667777776543 34311111222 2344555556788999988 777777666543
Q ss_pred cCCCCCCcEEEeeC-CCcc
Q 004734 438 QNFVSPPPVAILPA-GTGN 455 (732)
Q Consensus 438 ~~~~~~ppvaILPl-GTGN 455 (732)
. ...|+..+|. -||-
T Consensus 99 ~---~~~p~i~IPTtatgs 114 (337)
T cd08177 99 R---TGLPIIAIPTTLSGS 114 (337)
T ss_pred H---hcCCEEEEcCCchhh
Confidence 2 2568888885 2444
No 160
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.60 E-value=82 Score=34.71 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE-EEEeccCCc----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV-VELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV-~dl~~t~~p----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++.+|+.=+.+. ..+.+++...|... .+ |+....+.+ .++.+.+++...+.||+.|| |++-.+.-.+.
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHHH
Confidence 566776533222 24667777777543 22 332211111 22455666667788999999 65555555553
Q ss_pred hcCCCCCCcEEEeeC--CCcchhhH
Q 004734 437 KQNFVSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 437 ~~~~~~~ppvaILPl--GTGNDlAR 459 (732)
-. ...|+..+|. |||--...
T Consensus 98 ~~---~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 98 DY---LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred HH---cCCCEEEeCCccccCccccc
Confidence 22 3578888887 56654433
No 161
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.34 E-value=1.1e+02 Score=33.41 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=37.1
Q ss_pred cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhH
Q 004734 405 EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (732)
Q Consensus 405 ~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR 459 (732)
+.+.+.+++..-+.+++.|||||+.-+. .|.+. ...+|--+|-=--||+.-
T Consensus 81 ~~~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~---~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 81 QKAVENLKKLGIEGLVVIGGDGSYTGAQ-KLYEE---GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHh---hCCCEEeecccccCCCcC
Confidence 3455566666778899999999987663 33331 246788899999999973
No 162
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.87 E-value=45 Score=34.12 Aligned_cols=41 Identities=32% Similarity=0.607 Sum_probs=30.1
Q ss_pred CCccccccCC--CCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCc
Q 004734 91 KNLNCCVCLK--SMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 91 ~p~~C~vC~~--~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 141 (732)
+.-.|-+|.+ .|.+.|- ....+|..|+.+.|+.|... ..|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~--------~~~~~C~~C~~v~H~~C~~~--~~Cp 193 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI--------DTTVRCPKCKSVFHKSCFRK--KSCP 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCC--------CCeeeCCcCccccchhhcCC--CCCC
Confidence 5568888884 4554332 24579999999999999996 5565
No 163
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=27.21 E-value=1.3e+02 Score=31.93 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEe--ccC-CccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELS--STQ-GPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~--~t~-~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+.-+....- +-++++..|... ++..+. ..+ ..+...++...+ ..+.||++|| ||++.+.--+
T Consensus 20 ~~~lvv~d~~t~~~----~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg-G~i~D~~K~~ 94 (250)
T PF13685_consen 20 KKVLVVTDENTYKA----AGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG-GTIIDIAKYA 94 (250)
T ss_dssp SEEEEEEETTHHHH----HHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-HHHHHHHHHH
T ss_pred CcEEEEEcCCHHHH----HHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-cHHHHHHHHH
Confidence 57888876554333 334455555432 332221 111 122233445444 3467888888 9998887776
Q ss_pred HhcCCCCCCcEEEeeCCCcch
Q 004734 436 DKQNFVSPPPVAILPAGTGND 456 (732)
Q Consensus 436 ~~~~~~~~ppvaILPlGTGND 456 (732)
... ...|+..+|.=-.||
T Consensus 95 A~~---~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 95 AFE---LGIPFISVPTAASHD 112 (250)
T ss_dssp HHH---HT--EEEEES--SSG
T ss_pred HHh---cCCCEEEeccccccc
Confidence 542 357999999988888
No 164
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=27.14 E-value=87 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=30.4
Q ss_pred EEEEEeC-CCccEEEcCCCCCCCceEEE-EEecceeEEEecC
Q 004734 651 SIRIQLF-APLPVQIDGEPWFQQPCTLA-ISHHGQAFMLKRA 690 (732)
Q Consensus 651 ~I~I~~~-~~~pvqiDGE~~~~~P~~I~-I~~~~~~~ml~~~ 690 (732)
.+.|++. ....|-|||+..+.+|+++. +.++...+.+.++
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp~~~~~l~~G~~~v~v~~~ 44 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTPLTLKDLPPGEHTVTVEKP 44 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCcceeeecCCccEEEEEEEC
Confidence 4667665 56889999999999999888 6666666666554
No 165
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=27.08 E-value=43 Score=27.12 Aligned_cols=29 Identities=34% Similarity=0.780 Sum_probs=21.2
Q ss_pred cccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
+|.||..-+...+. +.|..||+..| |+.-
T Consensus 1 ~Cpv~~~~~~~~v~-----------~~Cp~cGipth--cS~e 29 (55)
T PF13824_consen 1 LCPVCKKDLPAHVN-----------FECPDCGIPTH--CSEE 29 (55)
T ss_pred CCCCCccccccccC-----------CcCCCCCCcCc--cCHH
Confidence 58888886543333 59999999998 6654
No 166
>PLN02834 3-dehydroquinate synthase
Probab=26.33 E-value=2.3e+02 Score=32.56 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC----cEEEEeccC-----CccH---HHHHhhhCC---CCeEEEEcCchhH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV----QVVELSSTQ-----GPEV---GLFLFRKVP---HFRVLVCGGDGTV 428 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~----qV~dl~~t~-----~p~~---al~l~r~~~---~~~Ivv~GGDGTV 428 (732)
++++||..+.... .+.+.+...|... .++++.... ..+. +.+.+++.. .+.||+.|| |++
T Consensus 101 ~rvlIVtD~~v~~----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv 175 (433)
T PLN02834 101 KRVLVVTNETVAP----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GVI 175 (433)
T ss_pred CEEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hHH
Confidence 6788888665432 2556666666432 333322111 1122 223344433 346777777 788
Q ss_pred HHHHHHHHhcCCCCCCcEEEeeCC
Q 004734 429 GWVLNAIDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 429 ~~VLn~l~~~~~~~~ppvaILPlG 452 (732)
..+.-.+... +.+.+|+..+|.-
T Consensus 176 ~D~ak~~A~~-y~rgiplI~VPTT 198 (433)
T PLN02834 176 GDMCGFAAAS-YQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHH-hcCCCCEEEECCc
Confidence 8777654321 1246899999993
No 167
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=25.55 E-value=18 Score=36.98 Aligned_cols=30 Identities=30% Similarity=0.660 Sum_probs=25.2
Q ss_pred ccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 93 ~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
..|+.|.+.+. ||. +|..|++..|-+|...
T Consensus 182 k~Cn~Ch~LvI--qg~-----------rCg~c~i~~h~~c~qt 211 (235)
T KOG4718|consen 182 KNCNLCHCLVI--QGI-----------RCGSCNIQYHRGCIQT 211 (235)
T ss_pred HHHhHhHHHhh--eee-----------ccCcccchhhhHHHHH
Confidence 35999998765 564 9999999999999875
No 168
>PLN02884 6-phosphofructokinase
Probab=25.45 E-value=1.4e+02 Score=33.94 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=37.7
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh----cCCCCCCcEEEeeCCCcchhh
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK----QNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~----~~~~~~ppvaILPlGTGNDlA 458 (732)
.+.+.+.+++..-+.+++.|||||+.-+.. |.+ .+ .+.+|--+|-==-||+.
T Consensus 132 ~~~i~~~L~~~~Id~LivIGGdgS~~~a~~-L~~~~~~~g--~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 132 TSDIVDSIEARGINMLFVLGGNGTHAGANA-IHNECRKRK--MKVSVVGVPKTIDNDIL 187 (411)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHHHH-HHHHHHHcC--CCceEEeccccccCCCc
Confidence 345666677777789999999999976533 322 22 24788889998899986
No 169
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=25.41 E-value=3e+02 Score=28.56 Aligned_cols=71 Identities=7% Similarity=-0.167 Sum_probs=46.8
Q ss_pred hhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhCCCC--eEEEEcCchhHHHHHHHHHhcCCC-CCCcEEEe
Q 004734 379 GDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKVPHF--RVLVCGGDGTVGWVLNAIDKQNFV-SPPPVAIL 449 (732)
Q Consensus 379 g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~~~~--~Ivv~GGDGTV~~VLn~l~~~~~~-~~ppvaIL 449 (732)
|.++.+.++..+....| .||...+-|+.....+.+..-+ .++++||+.|+-.+.++..+..-. ..--+||+
T Consensus 43 G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~ 117 (218)
T PRK13305 43 GLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNW 117 (218)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEec
Confidence 46678888887755667 4776666675544445555543 678889999999999976542211 12357774
No 170
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=24.91 E-value=53 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=20.2
Q ss_pred cccccCCCCCCCCCCCCcccCCcCccccccccccc
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAA 128 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~v 128 (732)
||..|..+|..+.+- ....+.|..|++..
T Consensus 2 FCp~Cg~~l~~~~~~------~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEGK------EKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccCC------CCCEEECCcCCCeE
Confidence 899999988743221 12367999999753
No 171
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.81 E-value=1.2e+02 Score=33.83 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhH
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR 459 (732)
.+.+.+.+++..-+.+++.|||||+. .+..|.+. ...++--+|-==-||+.-
T Consensus 96 ~~~~~~~l~~~~Id~Li~IGGdgS~~-~a~~L~~~---~~i~vIgiPkTIDNDl~~ 147 (360)
T PRK14071 96 SQEIIDGYHSLGLDALIGIGGDGSLA-ILRRLAQQ---GGINLVGIPKTIDNDVGA 147 (360)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHH-HHHHHHHh---cCCcEEEecccccCCCcC
Confidence 34566677777788999999999986 34555542 257888889888999863
No 172
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=24.69 E-value=2.8e+02 Score=30.83 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE--EEEecc---CCccH---HHHHhhhCC---C-CeEEEEcCchhHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSST---QGPEV---GLFLFRKVP---H-FRVLVCGGDGTVG 429 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV--~dl~~t---~~p~~---al~l~r~~~---~-~~Ivv~GGDGTV~ 429 (732)
++++||..+..-.. +.+++...|+.. .+ +-+... ...+. +.+.+++.. . +.||+.|| |++.
T Consensus 27 ~~~lvVtd~~v~~~----~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G~v~ 101 (354)
T cd08199 27 GRRFVVVDQNVDKL----YGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-GVLT 101 (354)
T ss_pred CeEEEEECccHHHH----HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-cHHH
Confidence 57888886654322 334555555422 22 212211 11122 233344433 2 67777777 7777
Q ss_pred HHHHHHHhcCCCCCCcEEEeeC
Q 004734 430 WVLNAIDKQNFVSPPPVAILPA 451 (732)
Q Consensus 430 ~VLn~l~~~~~~~~ppvaILPl 451 (732)
.+.-.+... +...+|+..+|.
T Consensus 102 D~ak~~A~~-~~rg~p~i~VPT 122 (354)
T cd08199 102 DVAGLAASL-YRRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHH-hcCCCCEEEEcC
Confidence 777766521 124678999998
No 173
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=23.66 E-value=26 Score=40.86 Aligned_cols=94 Identities=22% Similarity=0.410 Sum_probs=53.6
Q ss_pred CCccccccCCCCCCCCCCCCcccC----CcCcccccccccccCccchhhh-cCCCccceecCc----------------c
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVAS----DSFIHRCSICGAAAHLSCSLSA-HKDCKCVSMIGF----------------E 149 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~----~~~~~~C~~C~~~vH~~C~~~~-~~~Ck~~~~~~~----------------~ 149 (732)
.|+.|+-|.+.|-.-|.| ++- .-..++|..|..+.|..=+.+- ...|-.-...+. .
T Consensus 132 ~ps~cagc~~~lk~gq~l---lald~qwhv~cfkc~~c~~vL~gey~skdg~pyce~dy~~~fgvkc~~c~~fisgkvLq 208 (670)
T KOG1044|consen 132 GPSTCAGCGEELKNGQAL---LALDKQWHVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQAKFGVKCEECEKFISGKVLQ 208 (670)
T ss_pred CCccccchhhhhhcccee---eeeccceeeeeeehhhhcccccceeeccCCCcchhhhhhhhcCeehHHhhhhhhhhhhh
Confidence 678899999877632332 111 1236789999988886544332 222321111100 0
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccc---cCCCCCCceEecccccccchhhhcc
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSG---SFLGGSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~---~~~~~~~~~~C~WC~~~vH~~C~~~ 206 (732)
.--||| .+..+.|..|+..++. -+++|++.| |-+|...
T Consensus 209 ag~kh~----------HPtCARCsRCgqmF~eGEEMYlQGs~iW---------HP~C~qa 249 (670)
T KOG1044|consen 209 AGDKHF----------HPTCARCSRCGQMFGEGEEMYLQGSEIW---------HPDCKQA 249 (670)
T ss_pred ccCccc----------Ccchhhhhhhccccccchheeecccccc---------CCccccc
Confidence 122444 2556889999988864 467776655 7777654
No 174
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=23.28 E-value=82 Score=32.12 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=30.4
Q ss_pred HHHhHHHHHHHhhhhHHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCC
Q 004734 41 LTIAYTAFQWRRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMS 103 (732)
Q Consensus 41 ~~~~~~~~~~~r~~~~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~ 103 (732)
-=+.|.++++.+..-+...+|+..++++. .+|.+|..+-.
T Consensus 26 ~R~AfhLL~~~~~~~~~la~al~~a~~~i-----------------------~~C~~C~~~te 65 (198)
T COG0353 26 QRLAFHLLQRDREDVERLAKALLEAKENI-----------------------KHCSVCGNLTE 65 (198)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhcC-----------------------ccccccCCcCC
Confidence 34678888999988888999987776643 37999987654
No 175
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=23.11 E-value=50 Score=31.38 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=19.7
Q ss_pred CceEecccccccchhhhccCCCCCCCCCCCCCC
Q 004734 188 PIWCCLWCQRLVHVDCHNNMSNETGDICDLGPF 220 (732)
Q Consensus 188 ~~~~C~WC~~~vH~~C~~~~~~~~~~~CdlG~~ 220 (732)
..|+|.||+..+|....+.. |.=|-+
T Consensus 96 ~~W~Cv~C~~~Y~GeK~C~~-------C~tGiY 121 (128)
T PF11682_consen 96 TDWHCVMCGNHYHGEKYCPK-------CGTGIY 121 (128)
T ss_pred ceEEEecCCCccCcCEecCC-------CCCccc
Confidence 38999999999999765533 766654
No 176
>PRK03202 6-phosphofructokinase; Provisional
Probab=22.51 E-value=1.5e+02 Score=32.67 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=37.7
Q ss_pred cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhH
Q 004734 405 EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (732)
Q Consensus 405 ~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR 459 (732)
..+.+.+++..-+.++++|||||+.-+. .|.+. ..+|--+|-==-||+.-
T Consensus 83 ~~~~~~l~~~~Id~Li~IGGd~s~~~a~-~L~e~----~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 83 AKAIENLKKLGIDALVVIGGDGSYMGAK-RLTEH----GIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHHHHHHHHcCCCEEEEeCChHHHHHHH-HHHhc----CCcEEEecccccCCCCC
Confidence 3455666666778999999999997764 45542 56888899888999883
No 177
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=22.48 E-value=2e+02 Score=31.91 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhh--CCCc--EEEEeccCCc----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHH-
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLL--NPVQ--VVELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAI- 435 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL--~p~q--V~dl~~t~~p----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l- 435 (732)
+.+||..+ +-... .+.+++...| +..+ +|+-.....+ .++.+.+++...+.||+.|| |++-.+.-++
T Consensus 23 r~lvVt~~-~~~~~--~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~va 98 (366)
T PF00465_consen 23 RVLVVTDP-SLSKS--GLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG-GSVMDAAKAVA 98 (366)
T ss_dssp EEEEEEEH-HHHHH--THHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEECc-hHHhC--ccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-CCcCcHHHHHH
Confidence 78888877 43322 2667777766 3333 3542221222 23566777778899999999 4333333332
Q ss_pred --HhcC-------------CCCCCcEEEeeC--CCcchhhH
Q 004734 436 --DKQN-------------FVSPPPVAILPA--GTGNDLAR 459 (732)
Q Consensus 436 --~~~~-------------~~~~ppvaILPl--GTGNDlAR 459 (732)
.... ..+..|+..+|. |||-.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~ 139 (366)
T PF00465_consen 99 LLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTP 139 (366)
T ss_dssp HHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSS
T ss_pred hhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccc
Confidence 2211 012368999997 55444443
No 178
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.24 E-value=37 Score=28.02 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=19.8
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
....|..|++.+ +.+.. -.+|..|+..|=.+|..+.
T Consensus 8 ~~~~C~~C~~~F-~~~~r---rhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKF-SLFRR---RHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B--BSSS----EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcC-CCcee---eEccCCCCCEECCchhCCE
Confidence 457999999998 34433 5899999999988887653
No 179
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.64 E-value=1.4e+02 Score=34.18 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=38.2
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhc--CCCCCCcEEEeeCCCcchhhH
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQ--NFVSPPPVAILPAGTGNDLAR 459 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~--~~~~~ppvaILPlGTGNDlAR 459 (732)
.+.+++.+++..-+.+++.|||||+.-+.. |.+. +...+.+|--+|-==-||+.-
T Consensus 92 ~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~~~~g~~i~vIgIPkTIDNDl~g 148 (416)
T PRK14072 92 YERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLAKKMGYPIRCIGIPKTIDNDLPG 148 (416)
T ss_pred HHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHHHHhCCCceEEEeeecccCCCCC
Confidence 345666677777889999999999976533 3321 012347888889777999983
No 180
>PF15050 SCIMP: SCIMP protein
Probab=21.63 E-value=1e+02 Score=28.89 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=29.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHhHHHHHHHhhhhHHH
Q 004734 23 TESRLFILSCFIAALIGILTIAYTAFQWRRNINLGW 58 (732)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~w 58 (732)
+.+|+.+....|+.++++..|+|-+.+|+.+.-..|
T Consensus 6 ~nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKW 41 (133)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 457888888889999999999999999998555444
No 181
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=21.55 E-value=66 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=20.3
Q ss_pred cccccCCCccccCCCCCCceEeccccccc
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLV 199 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~v 199 (732)
.|..|+..+.-+... ..+||.-|+...
T Consensus 3 ~C~~C~t~L~yP~gA--~~vrCs~C~~vt 29 (31)
T TIGR01053 3 VCGGCRTLLMYPRGA--SSVRCALCQTVN 29 (31)
T ss_pred CcCCCCcEeecCCCC--CeEECCCCCeEe
Confidence 588999988765433 579999998653
No 182
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=21.19 E-value=3.1e+02 Score=30.80 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCc----EE----EEecc--CCc--c---HHHHHhhhCCC---CeEEEEcC
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ----VV----ELSST--QGP--E---VGLFLFRKVPH---FRVLVCGG 424 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~q----V~----dl~~t--~~p--~---~al~l~r~~~~---~~Ivv~GG 424 (732)
.++++|+.++.-..- ...+.+.+...|+... +| .+..- ..+ + ++.+.+.+... +.||+.||
T Consensus 30 ~~r~lvVtD~~v~~~-~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGG 108 (369)
T cd08198 30 RPKVLVVIDSGVAQA-NPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGG 108 (369)
T ss_pred CCeEEEEECcchHHh-hhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECC
Confidence 367888888655531 1124566666664322 22 11111 112 2 22333444433 46888888
Q ss_pred chhHHHHHHHHHhcCCCCCCcEEEeeCC
Q 004734 425 DGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 425 DGTV~~VLn~l~~~~~~~~ppvaILPlG 452 (732)
|++..+.-.+... +.+.+|+-.+|.=
T Consensus 109 -G~v~D~ag~vA~~-~~rGip~I~IPTT 134 (369)
T cd08198 109 -GAVLDAVGYAAAT-AHRGVRLIRIPTT 134 (369)
T ss_pred -hHHHHHHHHHHHH-hcCCCCEEEECCC
Confidence 8888887766543 3457889899964
No 183
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=20.82 E-value=1e+02 Score=28.58 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhc
Q 004734 705 VLESAETNRVINASQKRALLQEMALRL 731 (732)
Q Consensus 705 ~l~~~~~~~~i~~~~~~~~~~~~~~~~ 731 (732)
-|+.-..+|.|+++|...+-+|+.+||
T Consensus 47 ELe~d~~~G~l~~~e~~~~~~El~rrL 73 (117)
T TIGR03142 47 ELERDLAEGLLDEAEAEAARAELQRRL 73 (117)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456667899999999999999999987
No 184
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.79 E-value=1.2e+02 Score=34.06 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=34.0
Q ss_pred HHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh---c------------CCCCCCcEEEeeC--CCcchhhHhhc
Q 004734 406 VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK---Q------------NFVSPPPVAILPA--GTGNDLARVLF 462 (732)
Q Consensus 406 ~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~---~------------~~~~~ppvaILPl--GTGNDlAR~Lg 462 (732)
++.+++++...+.||++|| |++=.+.-++.- . .....+|+..+|. |||-...+.--
T Consensus 79 ~~~~~~~~~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~av 151 (383)
T PRK09860 79 AGLKLLKENNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCI 151 (383)
T ss_pred HHHHHHHHcCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEE
Confidence 4566777777889999999 333333333211 0 0123568999997 88876655443
No 185
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=20.69 E-value=3.7e+02 Score=30.35 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCc----EEEEe-------ccCCc-c---HHHHHhhhCCC---CeEEEEcCc
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQ----VVELS-------STQGP-E---VGLFLFRKVPH---FRVLVCGGD 425 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~q----V~dl~-------~t~~p-~---~al~l~r~~~~---~~Ivv~GGD 425 (732)
++++||..+.--.-. ..+...+..+|+... +|+.. ..... + ...+.+++... +.||+.||
T Consensus 43 ~r~liVtD~~v~~~~-~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG- 120 (389)
T PRK06203 43 KKVLVVIDSGVLRAH-PDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG- 120 (389)
T ss_pred CeEEEEECchHHHhh-hhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC-
Confidence 578888865444311 125567777775322 23211 11211 2 23344444443 46888887
Q ss_pred hhHHHHHHHHHhcCCCCCCcEEEeeC--CCcch
Q 004734 426 GTVGWVLNAIDKQNFVSPPPVAILPA--GTGND 456 (732)
Q Consensus 426 GTV~~VLn~l~~~~~~~~ppvaILPl--GTGND 456 (732)
|++..+.-.+... +.+..|+-.+|. |+..|
T Consensus 121 Gsv~D~ak~iA~~-~~rgip~I~IPTTlla~vd 152 (389)
T PRK06203 121 GAVLDMVGYAAAT-AHRGVRLIRIPTTVLAQND 152 (389)
T ss_pred cHHHHHHHHHHHH-hcCCCCEEEEcCCCccccC
Confidence 7777776555432 224678999996 34444
No 186
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=20.55 E-value=40 Score=32.51 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=15.2
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccc
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAA 127 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~ 127 (732)
..+||+||+ .+++ +.|..||..
T Consensus 117 ~r~fCaVCG--~~S~-------------ysC~~CG~k 138 (156)
T KOG3362|consen 117 LRKFCAVCG--YDSK-------------YSCVNCGTK 138 (156)
T ss_pred cchhhhhcC--CCch-------------hHHHhcCCc
Confidence 447999999 3332 488888853
No 187
>PRK00536 speE spermidine synthase; Provisional
Probab=20.51 E-value=65 Score=34.41 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=12.3
Q ss_pred CCeEEEEcCc-hhHHHHHH
Q 004734 416 HFRVLVCGGD-GTVGWVLN 433 (732)
Q Consensus 416 ~~~Ivv~GGD-GTV~~VLn 433 (732)
...+|+.||| ||+.|||-
T Consensus 74 k~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CeEEEEcCCchHHHHHHHC
Confidence 3457888999 56666654
No 188
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.23 E-value=64 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=15.0
Q ss_pred cccccCCCCCCCCCCCCcccCCcCcccccccccc
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAA 127 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~ 127 (732)
||..|...+... ...|..||..
T Consensus 1 ~Cp~CG~~~~~~------------~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDD------------AKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCc------------CcchhhhCCc
Confidence 688888877531 2378888853
No 189
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.23 E-value=48 Score=39.29 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=16.2
Q ss_pred cccccccccccCccchhh
Q 004734 118 IHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 118 ~~~C~~C~~~vH~~C~~~ 135 (732)
.+-|..|+...|..|+..
T Consensus 35 m~ac~~c~~~yH~~cvt~ 52 (694)
T KOG4443|consen 35 LLACSDCGQKYHPYCVTS 52 (694)
T ss_pred chhhhhhcccCCcchhhH
Confidence 479999999999999984
No 190
>PRK06756 flavodoxin; Provisional
Probab=20.11 E-value=3.2e+02 Score=25.81 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=18.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP 392 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p 392 (732)
+.++||+=+..| ..+++.+.+...|..
T Consensus 2 mkv~IiY~S~tG--nTe~vA~~ia~~l~~ 28 (148)
T PRK06756 2 SKLVMIFASMSG--NTEEMADHIAGVIRE 28 (148)
T ss_pred ceEEEEEECCCc--hHHHHHHHHHHHHhh
Confidence 467888865544 566777877777754
Done!