Query 004734
Match_columns 732
No_of_seqs 315 out of 1613
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 8.5E-45 2.9E-49 388.4 23.7 284 361-690 6-300 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 2.3E-40 7.8E-45 359.0 22.1 287 363-695 24-323 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 5.7E-40 2E-44 355.2 21.9 281 363-692 29-321 (332)
4 3pfq_A PKC-B, PKC-beta, protei 99.8 3.1E-20 1E-24 218.6 5.0 127 73-225 31-164 (674)
5 1r79_A Diacylglycerol kinase, 99.6 8.5E-17 2.9E-21 138.3 5.8 71 138-220 3-83 (84)
6 2an1_A Putative kinase; struct 99.3 8.9E-12 3.1E-16 131.9 15.0 245 363-689 5-273 (292)
7 1yt5_A Inorganic polyphosphate 99.3 2.8E-12 9.5E-17 133.6 10.3 231 365-690 2-240 (258)
8 1u0t_A Inorganic polyphosphate 99.2 1.3E-10 4.4E-15 124.1 14.9 247 363-690 4-286 (307)
9 2i2c_A Probable inorganic poly 99.1 3.6E-10 1.2E-14 118.6 13.6 233 365-690 2-250 (272)
10 2enn_A NPKC-theta, protein kin 99.1 2.9E-11 1E-15 102.8 2.2 61 70-143 14-76 (77)
11 2yuu_A NPKC-delta, protein kin 98.9 6.2E-10 2.1E-14 95.9 4.1 61 72-145 10-72 (83)
12 1faq_A RAF-1; transferase, ser 98.9 6.9E-10 2.4E-14 86.9 2.8 50 78-142 2-51 (52)
13 2enz_A NPKC-theta, protein kin 98.9 1.3E-09 4.3E-14 89.6 4.2 52 77-141 10-63 (65)
14 1ptq_A Protein kinase C delta 98.8 9.4E-10 3.2E-14 85.4 2.4 48 80-140 1-50 (50)
15 1y8f_A UNC-13 homolog A, MUNC1 98.8 1.3E-09 4.4E-14 89.8 3.1 52 78-142 12-65 (66)
16 2db6_A SH3 and cysteine rich d 98.8 1.3E-09 4.5E-14 91.8 2.1 56 75-143 13-71 (74)
17 2eli_A Protein kinase C alpha 98.8 3.2E-09 1.1E-13 91.8 4.1 57 75-144 13-71 (85)
18 3uej_A NPKC-delta, protein kin 98.8 9.7E-10 3.3E-14 90.2 0.5 54 77-143 7-62 (65)
19 2fnf_X Putative RAS effector N 98.7 7.1E-09 2.4E-13 86.8 4.0 52 76-141 20-72 (72)
20 1rfh_A RAS association (ralgds 98.7 5.6E-09 1.9E-13 84.0 2.0 51 77-141 8-59 (59)
21 2row_A RHO-associated protein 98.6 6.4E-09 2.2E-13 89.3 1.0 55 75-142 20-81 (84)
22 4b6d_A RAC GTPase-activating p 98.4 7.2E-08 2.5E-12 77.9 2.9 53 78-143 7-60 (61)
23 2enz_A NPKC-theta, protein kin 98.4 2.1E-07 7E-12 76.3 5.1 55 150-217 10-64 (65)
24 3ky9_A Proto-oncogene VAV; cal 98.4 1.1E-07 3.8E-12 110.0 4.1 81 51-146 491-573 (587)
25 1ptq_A Protein kinase C delta 98.3 4.5E-07 1.5E-11 70.1 4.8 49 153-210 1-49 (50)
26 1y8f_A UNC-13 homolog A, MUNC1 98.2 7E-07 2.4E-11 73.4 3.4 52 150-210 11-62 (66)
27 2vrw_B P95VAV, VAV1, proto-onc 98.2 6.9E-07 2.4E-11 98.5 4.0 78 52-144 320-399 (406)
28 2eli_A Protein kinase C alpha 98.1 1.9E-06 6.4E-11 74.4 5.3 52 150-210 15-66 (85)
29 3uej_A NPKC-delta, protein kin 98.1 1.4E-06 4.8E-11 71.2 4.3 51 151-210 8-58 (65)
30 2enn_A NPKC-theta, protein kin 98.1 1.6E-06 5.4E-11 73.5 4.3 52 150-210 21-72 (77)
31 2yuu_A NPKC-delta, protein kin 98.1 2.7E-06 9.4E-11 73.0 5.1 52 150-210 15-66 (83)
32 2fnf_X Putative RAS effector N 98.0 4E-06 1.4E-10 70.0 4.1 49 150-210 21-70 (72)
33 2db6_A SH3 and cysteine rich d 98.0 1.6E-06 5.4E-11 72.9 1.2 51 150-209 15-65 (74)
34 2row_A RHO-associated protein 98.0 6.1E-06 2.1E-10 70.8 4.8 54 150-210 22-78 (84)
35 1rfh_A RAS association (ralgds 97.9 3.6E-06 1.2E-10 67.6 2.9 49 150-210 8-57 (59)
36 1faq_A RAF-1; transferase, ser 97.9 4.2E-06 1.4E-10 65.2 3.3 46 152-210 3-48 (52)
37 1kbe_A Kinase suppressor of RA 97.9 5.5E-06 1.9E-10 63.8 3.4 44 78-137 3-46 (49)
38 1kbe_A Kinase suppressor of RA 97.9 8.2E-06 2.8E-10 62.8 3.9 46 150-209 2-47 (49)
39 3cxl_A N-chimerin; SH2, RHO-GA 97.7 1.3E-05 4.3E-10 90.2 2.8 54 77-143 207-262 (463)
40 1r79_A Diacylglycerol kinase, 97.6 4.2E-05 1.4E-09 65.6 3.6 58 76-143 24-81 (84)
41 4b6d_A RAC GTPase-activating p 97.5 4.9E-05 1.7E-09 61.3 3.2 50 151-210 7-56 (61)
42 3pfq_A PKC-B, PKC-beta, protei 97.2 0.00012 4.2E-09 85.8 3.0 54 76-142 99-154 (674)
43 2vrw_B P95VAV, VAV1, proto-onc 96.7 0.0011 3.9E-08 72.7 5.1 49 151-208 345-393 (406)
44 3cxl_A N-chimerin; SH2, RHO-GA 96.6 0.0013 4.6E-08 73.6 4.6 51 151-210 208-258 (463)
45 3afo_A NADH kinase POS5; alpha 96.6 0.0028 9.4E-08 69.4 6.9 113 361-494 39-179 (388)
46 3ky9_A Proto-oncogene VAV; cal 96.4 0.0022 7.4E-08 74.0 5.0 49 151-208 517-565 (587)
47 1z0s_A Probable inorganic poly 86.8 0.59 2E-05 48.7 5.0 75 364-458 30-106 (278)
48 1v5n_A PDI-like hypothetical p 83.3 0.99 3.4E-05 38.8 4.0 54 70-138 27-81 (89)
49 3pfn_A NAD kinase; structural 82.1 1.6 5.6E-05 47.0 6.1 63 416-493 109-171 (365)
50 2kwj_A Zinc finger protein DPF 80.1 0.9 3.1E-05 40.7 2.7 86 93-205 2-89 (114)
51 3v43_A Histone acetyltransfera 76.2 1.6 5.4E-05 39.0 3.1 87 93-205 6-93 (112)
52 2ysm_A Myeloid/lymphoid or mix 75.9 5.2 0.00018 35.3 6.5 80 91-205 6-85 (111)
53 1v5n_A PDI-like hypothetical p 69.0 2.2 7.6E-05 36.5 2.2 32 169-206 47-78 (89)
54 4ayb_P DNA-directed RNA polyme 63.7 3.8 0.00013 30.8 2.2 34 171-204 5-38 (48)
55 2yt5_A Metal-response element- 59.3 6.9 0.00024 31.1 3.3 36 167-205 4-39 (66)
56 4gne_A Histone-lysine N-methyl 57.3 6.6 0.00023 34.8 3.1 71 92-207 15-87 (107)
57 1twd_A Copper homeostasis prot 53.9 8.8 0.0003 39.2 3.8 51 401-452 127-177 (256)
58 1oj7_A Hypothetical oxidoreduc 53.8 25 0.00087 38.0 7.8 90 364-456 51-166 (408)
59 2ct0_A Non-SMC element 1 homol 53.7 4.1 0.00014 33.6 1.1 32 91-135 14-45 (74)
60 3nw0_A Non-structural maintena 53.5 4.4 0.00015 41.1 1.5 33 91-136 179-211 (238)
61 1o2d_A Alcohol dehydrogenase, 51.7 71 0.0024 34.0 10.8 85 364-452 41-149 (371)
62 1sg6_A Pentafunctional AROM po 51.0 10 0.00035 41.0 4.1 90 363-458 36-148 (393)
63 2bdq_A Copper homeostasis prot 48.8 9.6 0.00033 38.2 3.1 51 402-452 133-185 (224)
64 2lri_C Autoimmune regulator; Z 47.8 13 0.00044 29.9 3.1 33 165-205 8-40 (66)
65 1wil_A KIAA1045 protein; ring 47.3 7.1 0.00024 33.0 1.5 32 93-136 16-47 (89)
66 3jzd_A Iron-containing alcohol 43.9 35 0.0012 36.4 6.8 79 364-451 37-121 (358)
67 2yql_A PHD finger protein 21A; 43.4 16 0.00056 28.0 3.0 34 164-205 4-37 (56)
68 3iv7_A Alcohol dehydrogenase I 42.4 47 0.0016 35.5 7.5 79 364-451 38-120 (364)
69 2ct0_A Non-SMC element 1 homol 41.7 18 0.00061 29.7 3.2 31 170-207 16-46 (74)
70 3hl0_A Maleylacetate reductase 40.9 50 0.0017 35.1 7.4 79 364-451 35-119 (353)
71 2ku3_A Bromodomain-containing 39.8 21 0.00073 29.0 3.3 36 167-205 14-49 (71)
72 1wil_A KIAA1045 protein; ring 39.5 15 0.00052 31.0 2.3 36 166-207 12-47 (89)
73 3uhj_A Probable glycerol dehyd 39.0 33 0.0011 37.0 5.7 84 364-455 53-142 (387)
74 1f62_A Transcription factor WS 38.0 18 0.00063 27.0 2.5 31 170-205 1-31 (51)
75 1wev_A Riken cDNA 1110020M19; 37.6 14 0.00048 31.3 2.0 34 93-135 17-50 (88)
76 3bfj_A 1,3-propanediol oxidore 34.1 1.2E+02 0.0041 32.3 9.2 86 364-452 34-143 (387)
77 3nw0_A Non-structural maintena 32.9 21 0.00071 36.0 2.6 32 169-207 180-211 (238)
78 1we9_A PHD finger family prote 32.8 23 0.00078 27.8 2.4 36 91-136 5-40 (64)
79 2lnd_A De novo designed protei 32.8 21 0.00072 29.8 2.1 50 359-413 47-97 (112)
80 2gru_A 2-deoxy-scyllo-inosose 32.7 63 0.0021 34.4 6.6 83 363-451 34-128 (368)
81 1wev_A Riken cDNA 1110020M19; 32.5 25 0.00086 29.7 2.7 34 169-205 16-49 (88)
82 2yt5_A Metal-response element- 31.3 19 0.00066 28.4 1.7 35 92-135 6-40 (66)
83 1pfk_A Phosphofructokinase; tr 29.2 68 0.0023 33.7 5.9 51 404-459 83-133 (320)
84 3ce9_A Glycerol dehydrogenase; 27.9 98 0.0034 32.5 7.1 83 364-455 35-124 (354)
85 3okf_A 3-dehydroquinate syntha 27.7 1.1E+02 0.0039 32.9 7.6 83 363-451 62-157 (390)
86 2l43_A N-teminal domain from h 27.1 33 0.0011 29.0 2.5 35 168-205 24-58 (88)
87 1mm2_A MI2-beta; PHD, zinc fin 26.8 34 0.0012 26.8 2.4 30 168-205 8-37 (61)
88 2ku3_A Bromodomain-containing 26.8 26 0.0009 28.5 1.7 36 91-135 15-50 (71)
89 1zxx_A 6-phosphofructokinase; 26.7 66 0.0023 33.8 5.3 51 403-458 81-131 (319)
90 2hig_A 6-phospho-1-fructokinas 25.9 61 0.0021 36.1 5.0 52 405-458 179-233 (487)
91 2puy_A PHD finger protein 21A; 25.7 44 0.0015 25.9 2.9 29 169-205 5-33 (60)
92 1mm2_A MI2-beta; PHD, zinc fin 25.4 35 0.0012 26.7 2.2 30 92-135 9-38 (61)
93 2k16_A Transcription initiatio 25.4 32 0.0011 27.9 2.0 35 167-206 16-50 (75)
94 2l5u_A Chromodomain-helicase-D 25.0 39 0.0013 26.4 2.4 31 168-206 10-40 (61)
95 2job_A Antilipopolysaccharide 24.5 75 0.0026 27.7 4.2 57 669-725 29-101 (102)
96 1xmp_A PURE, phosphoribosylami 24.4 88 0.003 29.8 5.1 83 363-454 10-100 (170)
97 3clh_A 3-dehydroquinate syntha 24.2 1.4E+02 0.0049 31.2 7.5 84 363-452 26-120 (343)
98 1xwh_A Autoimmune regulator; P 24.0 36 0.0012 27.0 2.1 30 92-135 8-37 (66)
99 3o70_A PHD finger protein 13; 23.7 33 0.0011 27.6 1.8 34 91-136 18-51 (68)
100 1xwh_A Autoimmune regulator; P 23.7 52 0.0018 26.0 3.0 30 168-205 7-36 (66)
101 4hf7_A Putative acylhydrolase; 23.5 54 0.0019 31.2 3.7 39 421-461 57-95 (209)
102 1jq5_A Glycerol dehydrogenase; 23.2 1.1E+02 0.0039 32.2 6.5 81 364-452 32-119 (370)
103 2x9a_A Attachment protein G3P; 23.2 20 0.0007 28.4 0.4 11 418-428 40-50 (65)
104 1wee_A PHD finger family prote 23.1 35 0.0012 27.6 1.8 35 91-136 15-49 (72)
105 1vlj_A NADH-dependent butanol 22.9 1.6E+02 0.0054 31.7 7.6 85 364-451 44-151 (407)
106 1f62_A Transcription factor WS 22.6 30 0.001 25.8 1.3 31 94-135 2-32 (51)
107 4b4k_A N5-carboxyaminoimidazol 21.8 2.4E+02 0.0083 27.1 7.6 85 358-451 16-108 (181)
108 2ywx_A Phosphoribosylaminoimid 21.7 1.8E+02 0.0062 27.3 6.7 66 380-450 12-82 (157)
109 2yw8_A RUN and FYVE domain-con 21.7 57 0.002 27.0 2.9 35 168-206 18-52 (82)
110 1we9_A PHD finger family prote 21.5 73 0.0025 24.8 3.4 37 167-207 4-40 (64)
111 3o70_A PHD finger protein 13; 21.4 63 0.0022 25.9 3.0 34 168-207 18-51 (68)
112 1wep_A PHF8; structural genomi 21.3 30 0.001 28.5 1.1 35 91-136 11-45 (79)
113 2ro1_A Transcription intermedi 20.7 44 0.0015 32.3 2.3 29 169-205 2-30 (189)
114 3lqh_A Histone-lysine N-methyl 20.5 36 0.0012 32.9 1.6 33 91-133 1-36 (183)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=8.5e-45 Score=388.45 Aligned_cols=284 Identities=20% Similarity=0.230 Sum_probs=219.8
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC--CCCeEEEEcCchhHHHHHHHHHh
Q 004734 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV--PHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 361 ~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~--~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
..+++++||+||+||++++.+++++++.+|....+ +++..|+.++++.++++++ ..+.||++||||||++|+|++..
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~ 85 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAP 85 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhh
Confidence 34789999999999999998889999998876543 6676788999999988875 45789999999999999999986
Q ss_pred cCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeec
Q 004734 438 QNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLG 517 (732)
Q Consensus 438 ~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~Nyfs 517 (732)
.+ .++|||+||+||||||||+||++. ++.++++.+.++....+|.+.+ +.+||+|++|
T Consensus 86 ~~--~~~~l~iiP~Gt~N~~ar~lg~~~---------~~~~a~~~i~~g~~~~iDlg~v-----------~~~~F~~~~~ 143 (304)
T 3s40_A 86 LE--IRPTLAIIPGGTCNDFSRTLGVPQ---------NIAEAAKLITKEHVKPVDVAKA-----------NGQHFLNFWG 143 (304)
T ss_dssp CS--SCCEEEEEECSSCCHHHHHTTCCS---------SHHHHHHHHTTCCEEEEEEEEE-----------TTEEESSEEE
T ss_pred CC--CCCcEEEecCCcHHHHHHHcCCCc---------cHHHHHHHHHhCCeEEEEEEEE-----------CCEEEEEEEe
Confidence 42 468999999999999999999874 3567777787788888887765 3479999999
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccC
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gG 597 (732)
+|+||+|+.+++..+ ++.+|+++|+.++++.+++ ..+++++|++||+.++. +...++|+|.++|||
T Consensus 144 ~G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~dg~~~~~--~~~~v~v~N~~~~Gg 209 (304)
T 3s40_A 144 IGLVSEVSNNIDAEE--------KAKLGKIGYYLSTIRTVKN----AETFPVKITYDGQVYED--EAVLVMVGNGEYLGG 209 (304)
T ss_dssp EC--------------------------CHHHHTTTC----------CCEEEEEEETTEEEEE--EEEEEEEECSSEETT
T ss_pred ehHHHHHHHhcCHHH--------hhcCCchHHHHHHHHHHhh----cCCceEEEEECCEEEEe--EEEEEEEECCCcCCC
Confidence 999999998876321 3568999999999998864 56789999999998764 588999999999999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccc--hhhhh------ccCCceEEeEeeEEEEEeCCCccEEEcCCCC
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHL--GKLQV------GLSRARRLAQGQSIRIQLFAPLPVQIDGEPW 669 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l--~~l~~------gl~~~vrl~q~~~I~I~~~~~~pvqiDGE~~ 669 (732)
|+.++|++ +++||+|||+.++..... ..+.. ...+.+++.++++++|++.+++++|+|||++
T Consensus 210 g~~~~p~a----------~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~~~~~~~~DGE~~ 279 (304)
T 3s40_A 210 IPSFIPNV----------KCDDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETEEEKEVDTDGESS 279 (304)
T ss_dssp EECSSTTC----------CTTSSCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEESSCCEEEEC--CC
T ss_pred CcccCCCC----------cCCCCEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeCCCcEEEeCCCCC
Confidence 99999987 799999999999875421 11111 1246789999999999999999999999999
Q ss_pred CCCceEEEEEecceeEEEecC
Q 004734 670 FQQPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 670 ~~~P~~I~I~~~~~~~ml~~~ 690 (732)
...|++|++.|+++.+++|+.
T Consensus 280 ~~~p~~i~v~p~al~v~~p~~ 300 (304)
T 3s40_A 280 LHTPCQIELLQGHFTMIYNPA 300 (304)
T ss_dssp EESSEEEEEEEEEEEEECCTT
T ss_pred CCceEEEEEECCeEEEEechh
Confidence 999999999999999999864
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=2.3e-40 Score=358.95 Aligned_cols=287 Identities=17% Similarity=0.172 Sum_probs=229.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
+++++||+||+||++++.+++++++.+|....+ +.+..|+.++++.+++++. ..+.|||+||||||++|++++.+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~ 103 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK 103 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhC
Confidence 568999999999999888889999999987665 6666677888888777654 357899999999999999999653
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeecc
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGV 518 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsI 518 (732)
...+|||+||+||+|||||+||++. ++.++++.+.++....+|.+++ +.++|+|++++
T Consensus 104 --~~~~pl~iIP~GT~N~lAr~Lg~~~---------~~~~al~~i~~g~~~~iD~g~v-----------~~r~fl~~~~~ 161 (337)
T 2qv7_A 104 --PNRPKLGVIPMGTVNDFGRALHIPN---------DIMGALDVIIEGHSTKVDIGKM-----------NNRYFINLAAG 161 (337)
T ss_dssp --SSCCEEEEEECSSCCHHHHHTTCCS---------SHHHHHHHHHHTCEEEEEEEEE-----------TTEEESSEEEE
T ss_pred --CCCCcEEEecCCcHhHHHHHcCCCC---------CHHHHHHHHHcCCcEEEEEEEE-----------CCEEEEEEeee
Confidence 2578999999999999999999873 3667788888888788887765 24799999999
Q ss_pred chhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccCC
Q 004734 519 GCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMGG 598 (732)
Q Consensus 519 G~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gGG 598 (732)
|+||+++.+++..+ ++.+|+++|...++++++. ...++++|++||+.++ .+...+++.|.++++||
T Consensus 162 G~~a~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~~----~~~~~~~i~~dg~~~~--~~~~~v~v~n~~~~gGg 227 (337)
T 2qv7_A 162 GQLTQVSYETPSKL--------KSIVGPFAYYIKGFEMLPQ----MKAVDLRIEYDGNVFQ--GEALLFFLGLTNSMAGF 227 (337)
T ss_dssp ECBCC---------------------CGGGSCCCTTTTGGG----BCCEEEEEEETTEEEE--EEEEEEEEESSCCCSSC
T ss_pred cccHHHHHHhhHHH--------HhccChHHHHHHHHHHHHh----CCCccEEEEECCEEEE--eeEEEEEEECCCCCCCC
Confidence 99999998875421 3457899999988888763 5678999999999976 36788999999999999
Q ss_pred cccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhh------hhc---cCCceEEeEeeEEEEEeCCCccEEEcCCCC
Q 004734 599 VDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKL------QVG---LSRARRLAQGQSIRIQLFAPLPVQIDGEPW 669 (732)
Q Consensus 599 ~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l------~~g---l~~~vrl~q~~~I~I~~~~~~pvqiDGE~~ 669 (732)
..++|.+ +++||.|||+.++....+..+ ..| ..+.+++.++++|+|+..+++++++|||++
T Consensus 228 ~~i~P~a----------~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~~~~~~iDGE~~ 297 (337)
T 2qv7_A 228 EKLVPDA----------KLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYG 297 (337)
T ss_dssp SCSSTTC----------CSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSSCCEEEETTEEE
T ss_pred CccCCCC----------cCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECCCCeEEECCCcC
Confidence 9999987 689999999999975332221 112 136789999999999988889999999999
Q ss_pred CCCceEEEEEecceeEEEecCCCCcc
Q 004734 670 FQQPCTLAISHHGQAFMLKRAAEEPL 695 (732)
Q Consensus 670 ~~~P~~I~I~~~~~~~ml~~~~~~~~ 695 (732)
...|++|++.|+.+.++.|....++.
T Consensus 298 ~~~~i~i~v~p~~l~v~~p~~~~~~~ 323 (337)
T 2qv7_A 298 GKLPANFLNLERHIDVFAPNDIVNEE 323 (337)
T ss_dssp EESCEEEEEEEEEEEEECCTTSCCTT
T ss_pred CCCcEEEEEEcCeEEEEecCcccccc
Confidence 98999999999999999988765544
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=5.7e-40 Score=355.22 Aligned_cols=281 Identities=19% Similarity=0.155 Sum_probs=221.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhhC---CCCeEEEEcCchhHHHHHHHHHhc
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRKV---PHFRVLVCGGDGTVGWVLNAIDKQ 438 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~~---~~~~Ivv~GGDGTV~~VLn~l~~~ 438 (732)
+++++||+||.||++ +.++++...|....+ +.+..|++++++.+++++. ..+.|||+||||||++|++++.+.
T Consensus 29 ~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 29 FPASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp -CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhhc
Confidence 578999999999987 456677777765543 5555566787777766554 468899999999999999999864
Q ss_pred CCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCc-eeeeeec
Q 004734 439 NFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPK-FLNNYLG 517 (732)
Q Consensus 439 ~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~-~f~Nyfs 517 (732)
.....+|||+||+||+|||||+|+|+. ++.+.++.+.++....+|.+.+ +.+ +|+|++|
T Consensus 106 ~~~~~~plgiiP~Gt~N~fa~~l~i~~---------~~~~al~~i~~g~~~~iDlg~v-----------~~r~~fl~~~~ 165 (332)
T 2bon_A 106 EGDDIPALGILPLGTANDFATSVGIPE---------ALDKALKLAIAGDAIAIDMAQV-----------NKQTCFINMAT 165 (332)
T ss_dssp CSSCCCEEEEEECSSSCHHHHHTTCCS---------SHHHHHHHHHHSEEEEEEEEEE-----------TTSCEESSEEE
T ss_pred ccCCCCeEEEecCcCHHHHHHhcCCCC---------CHHHHHHHHHcCCeEEeeEEEE-----------CCceEEEEEEe
Confidence 323578999999999999999999873 3567788888888888887765 234 9999999
Q ss_pred cchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEeccCcccC
Q 004734 518 VGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVANIGSYMG 597 (732)
Q Consensus 518 IG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~Nip~~gG 597 (732)
+|+||+|+.+++..+ ++.+|+++|++.+++.++ ...+++++|++||+.++. +...++++|++||||
T Consensus 166 ~G~da~v~~~~~~~~--------k~~~G~~~Y~~~~l~~l~----~~~~~~~~i~~dg~~~~~--~~~~v~v~N~~~~gg 231 (332)
T 2bon_A 166 GGFGTRITTETPEKL--------KAALGSVSYIIHGLMRMD----TLQPDRCEIRGENFHWQG--DALVIGIGNGRQAGG 231 (332)
T ss_dssp EEEEEEC------------------CCHHHHHHHHHTSCEE----EEECEEEEEEETTEEEEE--EESEEEEESSSCBTT
T ss_pred ECccHHHHHHhhHHh--------HhcccHHHHHHHHHHHHh----hCCCeeEEEEECCEEEEE--EEEEEEEECCCccCC
Confidence 999999987664211 345799999998766554 345789999999998863 578899999999999
Q ss_pred CcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcccchhhhh------c-cCCceEEeEeeEEEEEeCCCccEEEcCCCCC
Q 004734 598 GVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTWHLGKLQV------G-LSRARRLAQGQSIRIQLFAPLPVQIDGEPWF 670 (732)
Q Consensus 598 G~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~~l~~l~~------g-l~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~ 670 (732)
|+.++|.+ +++||.|||+.++.. .+ .+.. | ..+.+.+.++++|+|+..+++++|+|||++.
T Consensus 232 g~~i~P~a----------~~~DG~Ldv~iv~~~-~~-~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~~~~~~~iDGE~~~ 299 (332)
T 2bon_A 232 GQQLCPNA----------LINDGLLQLRIFTGD-EI-LPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLS 299 (332)
T ss_dssp TBCSCTTC----------CTTSSCEEEEEECCS-SC-CHHHHHHHHTTCCCTTEEEEEESEEEEEEEEEEEEEETTEEEE
T ss_pred CcccCCCC----------CCCCCeEEEEEECCH-HH-HHHHHHHHHcCCCCCcEEEEEeeEEEEEECCCCeEEecCCCCC
Confidence 99999987 689999999999977 33 2211 1 1267899999999999888899999999999
Q ss_pred CCceEEEEEecceeEEEecCCC
Q 004734 671 QQPCTLAISHHGQAFMLKRAAE 692 (732)
Q Consensus 671 ~~P~~I~I~~~~~~~ml~~~~~ 692 (732)
..|++|++.|+++.+++|+..+
T Consensus 300 ~~~~~i~v~p~al~vl~p~~~~ 321 (332)
T 2bon_A 300 GQNFHIEILPAALRCRLPPDCP 321 (332)
T ss_dssp EEEEEEEEEEEEEEEEECTTCT
T ss_pred CceEEEEEECCeeEEEeCCCcc
Confidence 9999999999999999987654
No 4
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.79 E-value=3.1e-20 Score=218.58 Aligned_cols=127 Identities=20% Similarity=0.320 Sum_probs=52.4
Q ss_pred CccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccceecC---
Q 004734 73 HKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIG--- 147 (732)
Q Consensus 73 ~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~--- 147 (732)
..+...+|.|.+++|. +|+||++|.++||| +||| +|..|+++||++|+.++...|.+.....
T Consensus 31 ~~~~~~~H~f~~~~~~--~p~~C~~C~~~i~g~~~qg~-----------~C~~C~~~~H~~C~~~v~~~c~~~~~~~~~~ 97 (674)
T 3pfq_A 31 NVHEVKNHKFTARFFK--QPTFCSHCTDFIWGFGKQGF-----------QCQVCSFVVHKRCHEFVTFSCPGADKGPASD 97 (674)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCCceEEeeeCC--CCCccccccccccccCCcee-----------ECCCCCCCcChhhcCcCcccCCCcccccccc
Confidence 3556789999999887 99999999999996 8887 9999999999999999999998775321
Q ss_pred ccceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCCCCCCC--CCCCCCCeee
Q 004734 148 FEHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDIC--DLGPFRRLIL 225 (732)
Q Consensus 148 ~~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~~~~~C--dlG~~r~~Il 225 (732)
...++|+|+.. ++..+++|++|++.+++...+ |++|.||+++||.+|..+++.. | |-...+..|.
T Consensus 98 ~~~~~h~~~~~------~~~~~~~C~~C~~~l~g~~~q---g~~C~~C~~~~H~~C~~~v~~~----C~~d~~~~~g~i~ 164 (674)
T 3pfq_A 98 DPRSKHKFKIH------TYSSPTFCDHCGSLLYGLIHQ---GMKCDTCMMNVHKRCVMNVPSL----CGTDHTERRGRIY 164 (674)
T ss_dssp ----CCCCCEE------CCSSCCCCSSSCSCCBBSSSC---EECCSSSCCCBCSSTTSSSCCC----SSSCSSCCSCEEE
T ss_pred cccCCcceeec------CCCCCCCCCccccccchhhcC---ccccccCCcchhhhhhhccCcc----ccccccccccccc
Confidence 23589999885 899999999999999887665 9999999999999999999987 9 5555565554
No 5
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=99.65 E-value=8.5e-17 Score=138.32 Aligned_cols=71 Identities=21% Similarity=0.618 Sum_probs=61.7
Q ss_pred CCCccceecCc----------cceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 138 KDCKCVSMIGF----------EHVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 138 ~~Ck~~~~~~~----------~~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
.+||+++.++. .+++|||+++ |++++++|.+|++.|++.+. ++||||.||+++||++|..++
T Consensus 3 ~~~~w~~~~~~~~~~~~~~~~~~~~H~WveG------Nl~~~s~C~vC~k~c~s~~~--L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 3 SGSSGTTLASIGKDIIEDADGIAMPHQWLEG------NLPVSAKCTVCDKTCGSVLR--LQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCCCBCCCEEES------CCCTTCBCSSSCCBCCCTTT--CCCEEESSSCCEECHHHHHHC
T ss_pred CCccceecccccccccccCCCccceeeEEcc------CCCCCCEeCCCCCEeCCccC--CCCCCCcccChhHHHHHHHhc
Confidence 57999875432 2589999995 99999999999999998763 479999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 004734 208 SNETGDICDLGPF 220 (732)
Q Consensus 208 ~~~~~~~CdlG~~ 220 (732)
+.+ ||||++
T Consensus 75 ~~e----C~lG~~ 83 (84)
T 1r79_A 75 LTK----CSGPSS 83 (84)
T ss_dssp CSC----BCCSCC
T ss_pred cCc----CCCCCC
Confidence 887 999987
No 6
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.33 E-value=8.9e-12 Score=131.85 Aligned_cols=245 Identities=12% Similarity=0.091 Sum_probs=136.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCcc--------HHHHHhhhCCCCeEEEEcCchhHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPE--------VGLFLFRKVPHFRVLVCGGDGTVGWVLN 433 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~--------~al~l~r~~~~~~Ivv~GGDGTV~~VLn 433 (732)
++++++|+||.++. ..+.++.+...|....+ +.+..+.... .+.+.. ....+.||++|||||++++++
T Consensus 5 mkki~ii~np~~~~--~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEI-GQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHH-HHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhc-ccCCCEEEEEcCcHHHHHHHH
Confidence 57899999998753 34566666666654432 2222211000 001111 113588999999999999999
Q ss_pred HHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceee
Q 004734 434 AIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLN 513 (732)
Q Consensus 434 ~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~ 513 (732)
++.+. ..|.+|| |+||.|+|++. + + .++.++++.+.++.. .+ ..++|+
T Consensus 82 ~~~~~---~~P~lGI-~~Gt~gfla~~-~-~---------~~~~~al~~i~~g~~--------~~---------~~r~~l 129 (292)
T 2an1_A 82 TLARY---DINVIGI-NRGNLGFLTDL-D-P---------DNALQQLSDVLEGRY--------IS---------EKRFLL 129 (292)
T ss_dssp HHTTS---SCEEEEB-CSSSCCSSCCB-C-T---------TSHHHHHHHHHTTCE--------EE---------EEEEEE
T ss_pred HhhcC---CCCEEEE-ECCCcccCCcC-C-H---------HHHHHHHHHHHcCCC--------EE---------EEeEEE
Confidence 99763 2355777 89998888863 3 2 235666666655432 11 235666
Q ss_pred eeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHh-hhhcCCCcEEEEEECCEEEEecCCeeEEEE--e
Q 004734 514 NYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMD-RTFEDFPWQVRVVVDGTEIEVPEDAEGVLV--A 590 (732)
Q Consensus 514 NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~-~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v--~ 590 (732)
+....+ +.+.. |...++.++.- +.......++++++||+.++- ....+++| .
T Consensus 130 ~~~~~~-~~~~~-----------------------~~~~alnev~i~~~~~~~~~~~~v~idg~~~~~-~~~dglivstp 184 (292)
T 2an1_A 130 EAQVCQ-QDRQK-----------------------RISTAINEVVLHPGKVAHMIEFEVYIDETFAFS-QRSDGLIISTP 184 (292)
T ss_dssp EEEEEC-C---------------------------CEEEESSEEEEEESSTTCCEEEEEEETTEEEEE-EEESEEEEECT
T ss_pred EEEEEe-CCceE-----------------------eeeeEeeeEEEecCCCCceEEEEEEECCEEEEE-EEeCEEEECCC
Confidence 643222 11100 00001111111 000135678899999998752 13455555 4
Q ss_pred ccC-c---ccCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-cchhhhhccCCceEEeEeeEEEEEeC---CCccE
Q 004734 591 NIG-S---YMGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-HLGKLQVGLSRARRLAQGQSIRIQLF---APLPV 662 (732)
Q Consensus 591 Nip-~---~gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~l~~l~~gl~~~vrl~q~~~I~I~~~---~~~pv 662 (732)
|+. . .+||..+.|.+ +++.++... |. + ..+++-+.+.++|+|+.. ++..+
T Consensus 185 tGSTay~~SaGG~iv~P~~-----------------~~~~l~pi~p~~--l---~~r~iv~~~~~~i~i~~~~~~~~~~~ 242 (292)
T 2an1_A 185 TGSTAYSLSAGGPILTPSL-----------------DAITLVPMFPHT--L---SARPLVINSSSTIRLRFSHRRSDLEI 242 (292)
T ss_dssp GGGGTHHHHTTCCEECTTC-----------------SEEEEEEESCSS--T---TCCCEEEETTCCEEEEECC---CEEE
T ss_pred CchHHHHHhCCCCCCCCCC-----------------CeEEEEecCcCc--C---CCCCEEECCCCEEEEEEccCCCceEE
Confidence 543 1 25665565543 344444321 11 1 123555666778888863 57889
Q ss_pred EEcCCCCCC----CceEEEEEecceeEEEec
Q 004734 663 QIDGEPWFQ----QPCTLAISHHGQAFMLKR 689 (732)
Q Consensus 663 qiDGE~~~~----~P~~I~I~~~~~~~ml~~ 689 (732)
++|||.... .+++|++.++.+.++.+.
T Consensus 243 ~~DG~~~~~~~~~~~v~i~~~~~~~~li~~~ 273 (292)
T 2an1_A 243 SCDSQIALPIQEGEDVLIRRCDYHLNLIHPK 273 (292)
T ss_dssp EETTSCCEEECTTCEEEEEEEEEEEEEEEET
T ss_pred EECCCeEEecCCCcEEEEEECCCEEEEEEeC
Confidence 999998632 489999999999998874
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.33 E-value=2.8e-12 Score=133.63 Aligned_cols=231 Identities=16% Similarity=0.190 Sum_probs=139.0
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCC
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPP 444 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~p 444 (732)
++++|+||.||.+ +.++++++...|. -+++.. . + + ......+.||++|||||+.++++.+.. ..|
T Consensus 2 ki~ii~Np~~~~~-~~~~~~~i~~~l~---~~~~~~-~---~--~-~~~~~~D~vv~~GGDGTll~~a~~~~~----~~P 66 (258)
T 1yt5_A 2 KIAILYREEREKE-GEFLKEKISKEHE---VIEFGE-A---N--A-PGRVTADLIVVVGGDGTVLKAAKKAAD----GTP 66 (258)
T ss_dssp EEEEEECGGGHHH-HHHHHHHHTTTSE---EEEEEE-S---S--S-CSCBCCSEEEEEECHHHHHHHHTTBCT----TCE
T ss_pred EEEEEEeCCCchH-HHHHHHHHHHHhc---CCceec-c---c--c-cccCCCCEEEEEeCcHHHHHHHHHhCC----CCC
Confidence 5899999999987 7778888887776 233331 1 1 0 011135889999999999999998864 235
Q ss_pred cEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEccCCcccCCCceeeeeeccchhHHH
Q 004734 445 PVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQQGKLLEPPKFLNNYLGVGCDAKV 524 (732)
Q Consensus 445 pvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~~g~~~~~~~~f~NyfsIG~DA~V 524 (732)
.+|| ++||.+.|+ .+. + .++.+.++.+.++... + ..++|++....+-
T Consensus 67 ilGI-n~G~~Gfl~-~~~-~---------~~~~~al~~i~~g~~~--------i---------~~r~~l~~~~~~~---- 113 (258)
T 1yt5_A 67 MVGF-KAGRLGFLT-SYT-L---------DEIDRFLEDLRNWNFR--------E---------ETRWFIQIESELG---- 113 (258)
T ss_dssp EEEE-ESSSCCSSC-CBC-G---------GGHHHHHHHHHTTCCE--------E---------EEEEEEEEEETTE----
T ss_pred EEEE-ECCCCCccC-cCC-H---------HHHHHHHHHHHcCCce--------E---------EEEEEEEEEEcCC----
Confidence 5887 599997766 354 2 3466677666655322 1 1245554332110
Q ss_pred HHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEe--ccC-cc---cCC
Q 004734 525 ALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVA--NIG-SY---MGG 598 (732)
Q Consensus 525 ~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~--Nip-~~---gGG 598 (732)
.. ..+|-+. +.+.......++++++||+.+.- ....+++|. |+. .| +||
T Consensus 114 --~~-------------~alNev~---------i~~~~~~~~~~~~v~idg~~~~~-~~~dGlivsTptGSTaY~~SaGG 168 (258)
T 1yt5_A 114 --NH-------------LALNDVT---------LERDLSGKMVEIEVEVEHHSSMW-FFADGVVISTPTGSTAYSLSIGG 168 (258)
T ss_dssp --EE-------------EESSEEE---------EECCTTSCCEEEEEEETTSCCEE-EEESEEEEECTGGGGTTTTTTTC
T ss_pred --cc-------------eeeeEEE---------EecCCCCceEEEEEEECCEEEEE-EEccEEEEEcCCCcHHHHhhCCC
Confidence 00 0011100 00001135678899999988741 134555553 333 23 566
Q ss_pred cccCCCCCCCCCCCCCcccCCCeEEEEEEcCc-ccchhhhhccCCceEEeEeeEEEEEeCCCccEEEcCCCCCC-CceEE
Q 004734 599 VDLWQNEDENYDNFDPQSMHDKVLEVVSISGT-WHLGKLQVGLSRARRLAQGQSIRIQLFAPLPVQIDGEPWFQ-QPCTL 676 (732)
Q Consensus 599 ~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~-~~l~~l~~gl~~~vrl~q~~~I~I~~~~~~pvqiDGE~~~~-~P~~I 676 (732)
-.+.|.+ +++.++.. .|. + ..+++-+.+.++|+|+..++..+++|||.... .|++|
T Consensus 169 piv~P~~-----------------~~~~i~pi~p~~--l---~~rp~v~~~~~~i~i~~~~~~~~~~DG~~~~~~~~i~i 226 (258)
T 1yt5_A 169 PIIFPEC-----------------EVLEISPIAPQF--F---LTRSVVIPSNFKVVVESQRDINMLVDGVLTGKTKRIEV 226 (258)
T ss_dssp CCCCTTC-----------------CEEEEEEESCST--T---CCCCEEEETTSCEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cccCCCC-----------------CEEEEEEecccc--c---cCCCEEECCCCEEEEEECCCEEEEECCCcceeeEEEEE
Confidence 5555443 13343322 111 1 12455567778899988778899999998753 57999
Q ss_pred EEEecceeEEEecC
Q 004734 677 AISHHGQAFMLKRA 690 (732)
Q Consensus 677 ~I~~~~~~~ml~~~ 690 (732)
++.++...++.+..
T Consensus 227 ~~~~~~~~li~~~~ 240 (258)
T 1yt5_A 227 KKSRRYVRILRPPE 240 (258)
T ss_dssp EEEEEEEEEEECTT
T ss_pred EECCCeEEEEEcCC
Confidence 99999998888653
No 8
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.20 E-value=1.3e-10 Score=124.08 Aligned_cols=247 Identities=18% Similarity=0.201 Sum_probs=138.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccH---------------HHHHh-hh--C--CCCeEEE
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEV---------------GLFLF-RK--V--PHFRVLV 421 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~---------------al~l~-r~--~--~~~~Ivv 421 (732)
++++++|+||.++. ..+.++++...|....+ +.+..+..... ....+ +. . ..+.||+
T Consensus 4 m~ki~iI~n~~~~~--~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEE
T ss_pred CCEEEEEEeCCCHH--HHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEE
Confidence 57899999999864 34567777777765442 23332222110 11211 11 1 3578999
Q ss_pred EcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEEcc
Q 004734 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAILNQ 501 (732)
Q Consensus 422 ~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~~~ 501 (732)
.|||||+..+++.+...+ .|.+|| ++||.|.|+. +. + .++.++++.+.++....-+|
T Consensus 82 ~GGDGT~l~a~~~~~~~~---~pvlgi-~~G~~gfl~~-~~-~---------~~~~~~~~~i~~g~~~~~~r-------- 138 (307)
T 1u0t_A 82 LGGDGTFLRAAELARNAS---IPVLGV-NLGRIGFLAE-AE-A---------EAIDAVLEHVVAQDYRVEDR-------- 138 (307)
T ss_dssp EECHHHHHHHHHHHHHHT---CCEEEE-ECSSCCSSCS-EE-G---------GGHHHHHHHHHHTCCEEEEE--------
T ss_pred EeCCHHHHHHHHHhccCC---CCEEEE-eCCCCccCcc-cC-H---------HHHHHHHHHHHcCCcEEEEE--------
Confidence 999999999999998642 355776 7999999984 32 1 34667777776654332222
Q ss_pred CCcccCCCceeeeeeccchhHHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHh-hhhcCCCcEEEEEECCEEEEe
Q 004734 502 QGKLLEPPKFLNNYLGVGCDAKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMD-RTFEDFPWQVRVVVDGTEIEV 580 (732)
Q Consensus 502 ~g~~~~~~~~f~NyfsIG~DA~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~-~~~k~l~~~v~v~~DG~~i~l 580 (732)
.|++. .++.+.+.. |...++.++.- +.......++++++||+.+..
T Consensus 139 ---------~~l~~-~v~~~g~~~-----------------------~~~~ALNev~i~~~~~~~~~~~~v~idg~~~~~ 185 (307)
T 1u0t_A 139 ---------LTLDV-VVRQGGRIV-----------------------NRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSA 185 (307)
T ss_dssp ---------CCEEE-EEEETTEEE-----------------------EEEEESSEEEEECSSSSSCEEEEEESSSSEEEE
T ss_pred ---------EEEEE-EEEeCccce-----------------------eceeeeeeEEEecCCCceEEEEEEEECCEEEEE
Confidence 23221 111111000 00001111110 000123467888999988762
Q ss_pred cCCeeEEEEe--ccC-cc---cCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCc-ccchhhhhccCCceEEeEeeEEE
Q 004734 581 PEDAEGVLVA--NIG-SY---MGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGT-WHLGKLQVGLSRARRLAQGQSIR 653 (732)
Q Consensus 581 p~~~~~l~v~--Nip-~~---gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~-~~l~~l~~gl~~~vrl~q~~~I~ 653 (732)
....+|+|. |+. .| +||.-++|.+ +++.++.. .|. + ..+++-+...++|+
T Consensus 186 -~~~dGlivsTptGSTaY~lSaGGpiv~P~~-----------------~~~~l~pi~p~~--l---~~rp~v~~~~~~i~ 242 (307)
T 1u0t_A 186 -FGCDGVLVSTPTGSTAYAFSAGGPVLWPDL-----------------EAILVVPNNAHA--L---FGRPMVTSPEATIA 242 (307)
T ss_dssp -EEESEEEEECTGGGGTHHHHTTCCEECTTC-----------------CCEEEEEESCSS--S---CCCCEEECTTCCEE
T ss_pred -EcCCEEEEccchhhHHHHhcCCCCccCCCC-----------------CeEEEEeecCcc--c---cCCCEEECCCCEEE
Confidence 236677776 766 34 6776666654 22233321 121 1 12344455566777
Q ss_pred EEeC---CCccEEEcCCCCC----CCceEEEEEecceeEEEecC
Q 004734 654 IQLF---APLPVQIDGEPWF----QQPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 654 I~~~---~~~pvqiDGE~~~----~~P~~I~I~~~~~~~ml~~~ 690 (732)
|++. ++..+++|||... ..+++|++.++...++.+..
T Consensus 243 i~v~~~~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~~~~ 286 (307)
T 1u0t_A 243 IEIEADGHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDS 286 (307)
T ss_dssp EEECTTSCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEECSC
T ss_pred EEEecCCCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEEeCC
Confidence 7653 5688999999752 25799999999999988753
No 9
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.12 E-value=3.6e-10 Score=118.59 Aligned_cols=233 Identities=14% Similarity=0.155 Sum_probs=133.6
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCC
Q 004734 365 PLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPP 444 (732)
Q Consensus 365 pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~p 444 (732)
++.+|+||+ ..+.++++++..+|....+ ++. ....+.||+.|||||+..+++.+.... ..+
T Consensus 2 ki~ii~n~~---~~~~~~~~~l~~~l~~~g~-~v~-------------~~~~D~vv~lGGDGT~l~aa~~~~~~~--~~~ 62 (272)
T 2i2c_A 2 KYMITSKGD---EKSDLLRLNMIAGFGEYDM-EYD-------------DVEPEIVISIGGDGTFLSAFHQYEERL--DEI 62 (272)
T ss_dssp EEEEEECCS---HHHHHHHHHHHHHHTTSSC-EEC-------------SSSCSEEEEEESHHHHHHHHHHTGGGT--TTC
T ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHCCC-EeC-------------CCCCCEEEEEcCcHHHHHHHHHHhhcC--CCC
Confidence 588999963 2456778888888877653 221 123578999999999999999987531 134
Q ss_pred c-EEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccceEEEEE--ccCCcccCCCceeeeeeccchh
Q 004734 445 P-VAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDRWKVAIL--NQQGKLLEPPKFLNNYLGVGCD 521 (732)
Q Consensus 445 p-vaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDrw~v~i~--~~~g~~~~~~~~f~NyfsIG~D 521 (732)
| +|| |+|| |.|++.+. + .++.+.++.+.++....-++.-++.. ...|+. ....+.+|
T Consensus 63 PilGI-n~G~-lgfl~~~~-~---------~~~~~~l~~l~~g~~~i~~r~~L~~~v~~~~g~~-~~~~~ALN------- 122 (272)
T 2i2c_A 63 AFIGI-HTGH-LGFYADWR-P---------AEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKK-EATYLALN------- 122 (272)
T ss_dssp EEEEE-ESSS-CCSSCCBC-G---------GGHHHHHHHHHTTCCEEEEEEEEEEEEEESSSCC-EEEEEESS-------
T ss_pred CEEEE-eCCC-CCcCCcCC-H---------HHHHHHHHHHHcCCCEEEEEEEEEEEEEeCCCcE-EeHHhhhh-------
Confidence 5 777 9999 55766664 2 34677777776664332222222211 000100 00001111
Q ss_pred HHHHHHHHhhhhcCchhhhhhhhhhHHHHHHHHHHHHhhhhcCCCcEEEEEECCEEEEecCCeeEEEEe--ccC-cc---
Q 004734 522 AKVALDIHNLREENPEKFYNQFMNKVLYAREGAKSIMDRTFEDFPWQVRVVVDGTEIEVPEDAEGVLVA--NIG-SY--- 595 (732)
Q Consensus 522 A~V~~~fh~~Re~~p~kf~sr~~nkl~Y~~~g~~~~~~~~~k~l~~~v~v~~DG~~i~lp~~~~~l~v~--Nip-~~--- 595 (732)
-+. +.+ ......+++++||+.++. ....+++|. |+. .|
T Consensus 123 ------------------------ev~---------i~~--~~~~~~~~i~idg~~~~~-~~~DGlivsTptGSTaY~~S 166 (272)
T 2i2c_A 123 ------------------------EST---------VKS--SGGPFVVDVVINDIHFER-FRGDGLCMSTPSGTTAYNKS 166 (272)
T ss_dssp ------------------------EEE---------EEE--SSSCEEEEEEETTEEEEE-EEESEEEEECTGGGGTHHHH
T ss_pred ------------------------Hhh---------hcc--cCcEEEEEEEECCEEEEE-EECCEEEEEccccHHHHHHc
Confidence 110 000 023567899999998752 124455554 333 34
Q ss_pred cCCcccCCCCCCCCCCCCCcccCCCeEEEEEEcCcc-c-chhhhhccCCceEEeEeeEEEEEe--CCCccEEEcCCCCC-
Q 004734 596 MGGVDLWQNEDENYDNFDPQSMHDKVLEVVSISGTW-H-LGKLQVGLSRARRLAQGQSIRIQL--FAPLPVQIDGEPWF- 670 (732)
Q Consensus 596 gGG~~l~~~a~~~~~~f~~~~~~DGlLeVv~l~~~~-~-l~~l~~gl~~~vrl~q~~~I~I~~--~~~~pvqiDGE~~~- 670 (732)
+||.-+.|.. +++.++... + +...+. ..+++-+...++++|+. .++..+++|||.+.
T Consensus 167 aGGpiv~P~~-----------------~~~~ltpi~p~~l~~~r~-~~~p~v~~~~~~i~i~~~~~~~~~~~~DG~~~~~ 228 (272)
T 2i2c_A 167 LGGALMHPSI-----------------EAMQLTEMASINNRVYRT-IGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILH 228 (272)
T ss_dssp TTCCCCCTTS-----------------CEEEEEEESCCCSSSCCC-CCSCEEEETTCCEEEEESSCCCEEEEETTEEEEE
T ss_pred CCCCeeCCCC-----------------CceEEeCCCCccchhhhc-cCCcEEeCCCCEEEEEEcCCCCEEEEECCCEeec
Confidence 6666555543 233433221 1 110111 13355555566788764 35688999999853
Q ss_pred --CCceEEEEEecceeEEEecC
Q 004734 671 --QQPCTLAISHHGQAFMLKRA 690 (732)
Q Consensus 671 --~~P~~I~I~~~~~~~ml~~~ 690 (732)
..+++|++.++...++.++.
T Consensus 229 ~~~~~v~i~~~~~~~~~i~~~~ 250 (272)
T 2i2c_A 229 RDVQEIRYEVSAKKIHFARFRS 250 (272)
T ss_dssp CSEEEEEEEEEEEEEEEEECSC
T ss_pred CCCCEEEEEEcCCEEEEEEeCC
Confidence 25688999999999888754
No 10
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=99.07 E-value=2.9e-11 Score=102.76 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=53.8
Q ss_pred cccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 70 KTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 70 ~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
+.++.+...+|.|..++|. +|+||.+|.++||| +||| +|+.|++.+|++|..++..+|...
T Consensus 14 r~~~~~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~-----------~C~~C~~~~Hk~C~~~v~~~C~~~ 76 (77)
T 2enn_A 14 KQAKVHHVKCHEFTATFFP--QPTFCSVCHEFVWGLNKQGY-----------QCRQCNAAIHKKCIDKVIAKCTGS 76 (77)
T ss_dssp CCCCCEESSSCEEEEECCS--SCEECSSSCCEECCTTCCEE-----------ECSSSCCEEESGGGSSCCSCCCCC
T ss_pred cccccccCCCCccEEEcCC--CCcCccccChhhcccccccc-----------CcCCCCCcCCHhHHhhCcCCCCCC
Confidence 4456667889999999886 99999999999995 7886 999999999999999999999753
No 11
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=6.2e-10 Score=95.92 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=53.4
Q ss_pred cCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCcccee
Q 004734 72 RHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSM 145 (732)
Q Consensus 72 ~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~ 145 (732)
+..+...+|.|..+.|. +|+||.+|.++||| +||| +|..|++.+|++|..++...|.....
T Consensus 10 ~k~~~~~~H~F~~~~~~--~pt~C~~C~~~lwGl~kqg~-----------~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (83)
T 2yuu_A 10 AKIHYIKNHEFIATFFG--QPTFCSVCKDFVWGLNKQGY-----------KCRQCNAAIHKKCIDKIIGRCTGTAA 72 (83)
T ss_dssp CCEECGGGCCEEEECCS--SCCCCSSSCCCCCSSSCCEE-----------EETTTCCEECTTGGGTCCSCCSSCCC
T ss_pred hhCcccCCCceEeEeCC--CCcChhhcChhhcccccccc-----------ccCCcCCeeChhhhhhCCCcCCCccc
Confidence 33446679999999886 99999999999995 7886 99999999999999999999987654
No 12
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=98.87 E-value=6.9e-10 Score=86.91 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=46.2
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCcc
Q 004734 78 APHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (732)
Q Consensus 78 ~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 142 (732)
.+|.|..+.+. +|+||.+|.++|| ||| +|+.|++.+|++|..++...|..
T Consensus 2 ~~H~F~~~~~~--~pt~C~~C~~~l~--qG~-----------~C~~C~~~~H~~C~~~v~~~C~~ 51 (52)
T 1faq_A 2 TTHNFARKTFL--KLAFCDICQKFLL--NGF-----------RCQTCGYKFHEHCSTKVPTMCVD 51 (52)
T ss_dssp CCCCCEEECCS--SCEECTTSSSEEC--SEE-----------ECTTTTCCBCSTTSSSSSSCCCC
T ss_pred CCceeEeEeCC--CCcCCCCcccccc--cCC-----------EeCCCCCeEChhHHhhCcCcCCC
Confidence 57999999886 8999999999999 886 99999999999999999999964
No 13
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=89.58 Aligned_cols=52 Identities=23% Similarity=0.458 Sum_probs=47.6
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCc
Q 004734 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 77 ~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 141 (732)
..+|.|....+. +|+||.+|.++||| +||| +|+.|++.+|++|+.+++..|.
T Consensus 10 ~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~-----------~C~~C~~~~Hk~C~~~v~~~C~ 63 (65)
T 2enz_A 10 DMPHRFKVYNYK--SPTFCEHCGTLLWGLARQGL-----------KCDACGMNVHHRCQTKVANLCG 63 (65)
T ss_dssp CCCCCEEECCCC--SCCBCSSSCCBCCCSSSCSE-----------EESSSCCEECTTTTTTSCSCTT
T ss_pred CCCCccEeEcCC--CCcCchhcChhheecCCccc-----------ccCCCCCccCHhHHhhCcCcCC
Confidence 368999999876 99999999999996 7886 9999999999999999999985
No 14
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.83 E-value=9.4e-10 Score=85.37 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=44.2
Q ss_pred CeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCC
Q 004734 80 HTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDC 140 (732)
Q Consensus 80 H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~C 140 (732)
|.|....+. +|++|.+|.++||| +||| +|+.|++.+|++|..+++..|
T Consensus 1 H~F~~~~~~--~pt~C~~C~~~l~g~~~qg~-----------~C~~C~~~~H~~C~~~v~~~C 50 (50)
T 1ptq_A 1 HRFKVYNYM--SPTFCDHCGSLLWGLVKQGL-----------KCEDCGMNVHHKCREKVANLC 50 (50)
T ss_dssp CCEEEECCS--SCCBCTTTCCBCCSSSSCEE-----------EETTTCCEECHHHHTTSCSCC
T ss_pred CCCEeecCC--CCCCcCCCCceeeccCCccC-----------EeCCCCCeECHHHhhhcCCCC
Confidence 889998876 99999999999996 7886 999999999999999998877
No 15
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.82 E-value=1.3e-09 Score=89.82 Aligned_cols=52 Identities=25% Similarity=0.518 Sum_probs=46.2
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCcc
Q 004734 78 APHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (732)
Q Consensus 78 ~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 142 (732)
.+|.|....+. +|+||.+|.++||| +||| +|+.|++.+|++|..++..+|..
T Consensus 12 ~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~-----------~C~~C~~~~Hk~C~~~v~~~C~~ 65 (66)
T 1y8f_A 12 IQHNFEVWTAT--TPTYCYECEGLLWGIARQGM-----------RCTECGVKCHEKCQDLLNADCKL 65 (66)
T ss_dssp -CCCEEEEECS--SCCCCTTTCCCCCSSCCEEE-----------EETTTCCEECTTHHHHSCCCC--
T ss_pred CCcccEeeeCC--CCcChhhcChhhcccCccee-----------EcCCCCCeeCHHHHhhCcCcCCC
Confidence 58999999886 99999999999996 7886 99999999999999999999964
No 16
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.3e-09 Score=91.82 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=49.9
Q ss_pred cCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcC-CCccc
Q 004734 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHK-DCKCV 143 (732)
Q Consensus 75 ~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~-~Ck~~ 143 (732)
....+|.|....|. +|+||.+|.++||| +||| +|+.|++.+|++|+.++.. +|...
T Consensus 13 ~~~~~H~F~~~~f~--~pt~C~~C~~~lwGl~kqG~-----------~C~~C~~~~Hk~C~~~v~~~~C~~~ 71 (74)
T 2db6_A 13 VNDKPHKFKDHFFK--KPKFCDVCARMIVLNNKFGL-----------RCKNCKTNIHEHCQSYVEMQRCSGP 71 (74)
T ss_dssp SCSSBCCEEEEECS--SCEECSSSCCEECHHHHEEE-----------EESSSCCEECTTTTGGGSSSBCCCC
T ss_pred ccCCCCceEEeeCC--CCcCchhcChhhccccCCcc-----------ccCCCCCccChhHHhhCCCCcCCCC
Confidence 45678999999887 99999999999996 7886 9999999999999999986 69764
No 17
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=3.2e-09 Score=91.83 Aligned_cols=57 Identities=18% Similarity=0.406 Sum_probs=51.1
Q ss_pred cCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccce
Q 004734 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVS 144 (732)
Q Consensus 75 ~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~ 144 (732)
.+..+|.|....+. +|+||.+|.++||| +||| +|..|++.+|++|+.++...|....
T Consensus 13 ~~~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~kqG~-----------~C~~C~~~~Hk~C~~~v~~~C~~~~ 71 (85)
T 2eli_A 13 DPRSKHKFKIHTYG--SPTFCDHCGSLLYGLIHQGM-----------KCDTCDMNVHKQCVINVPSLCGMDH 71 (85)
T ss_dssp CTTTSCCCEEECCS--SCCBCSSSCCBCCCSSSCEE-----------ECSSSCCEEETTTTTTSCSCCCCCC
T ss_pred CCCCCcccEeeeCC--CCcCCcccCccccccccCCC-----------cCCCcCCccCHhHHhhcCCcCCcch
Confidence 45678999999886 99999999999996 7886 9999999999999999999997653
No 18
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=98.77 E-value=9.7e-10 Score=90.22 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=48.5
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 77 ~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
..+|.|....+. +|+||.+|.++||| +||| +|+.|++.+|++|..+++..|...
T Consensus 7 ~~~H~F~~~~~~--~pt~C~~C~~~l~Gl~~qg~-----------~C~~C~~~~Hk~C~~~v~~~C~~~ 62 (65)
T 3uej_A 7 VGSHRFKVYNYM--SPTFCDHCGSLLWGLVKQGL-----------KCEDCGMNVHHKCREKVANLCEFI 62 (65)
T ss_dssp EEECCEEEECCS--SCCBCTTTCCBCCSSSSCEE-----------EETTTCCEECHHHHTTSCSEEEEE
T ss_pred eCCceEEeEeCC--CCCcccccChhhhccCceee-----------ECCCCCCeEchhHhhhCCCcCCCc
Confidence 358999999886 99999999999996 7886 999999999999999999998643
No 19
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=98.71 E-value=7.1e-09 Score=86.77 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=47.1
Q ss_pred CCCCCeeEe-eeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCc
Q 004734 76 PLAPHTWVL-ESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 76 ~~~~H~w~~-~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 141 (732)
+..+|.|.. ..+. +|+||.+|.++| .+||| +|..|++++|++|..++...|+
T Consensus 20 ~~~~H~F~~~~~~~--~pt~C~~C~~~l-~~qG~-----------kC~~C~~~cHkkC~~~V~~~C~ 72 (72)
T 2fnf_X 20 RGEGHRFVELALRG--GPGWCDLCGREV-LRQAL-----------RCANCKFTCHSECRSLIQLDCR 72 (72)
T ss_dssp GCSSCCCEECCCCS--SCCBCTTTSSBC-SSCCE-----------ECTTSSCEECTGGGGGCCSCCC
T ss_pred cCCCCccceeecCC--CCcchhhhhHHH-HhCcC-----------ccCCCCCeechhhhccCcCCCC
Confidence 456899999 7776 999999999999 78997 9999999999999999999884
No 20
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=98.66 E-value=5.6e-09 Score=84.02 Aligned_cols=51 Identities=25% Similarity=0.451 Sum_probs=46.5
Q ss_pred CCCCeeEe-eeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCc
Q 004734 77 LAPHTWVL-ESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCK 141 (732)
Q Consensus 77 ~~~H~w~~-~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck 141 (732)
..+|.|.. ..+. +|+||.+|.++| .+||| +|+.|++++|++|..++...|.
T Consensus 8 ~~~H~F~~~~~~~--~pt~C~~C~~~i-~kqg~-----------kC~~C~~~cH~kC~~~v~~~C~ 59 (59)
T 1rfh_A 8 GEGHRFVELALRG--GPGWCDLCGREV-LRQAL-----------RCANCKFTCHSECRSLIQLDCR 59 (59)
T ss_dssp CSSCCCEECCCSS--CCEECTTTCSEE-CSCCE-----------ECTTTSCEECHHHHTTCCCCCC
T ss_pred CCCCcCeeeeccC--CCeEchhcchhh-hhCcc-----------EeCCCCCeEehhhhhhCcCCCC
Confidence 46899999 8776 999999999999 68997 9999999999999999999884
No 21
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=98.61 E-value=6.4e-09 Score=89.27 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=48.1
Q ss_pred cCCCCCeeEeeeeCCCCCccccccCCCCCC--CC--CCCCcccCCcCcccccccccccCccchh---hhcCCCcc
Q 004734 75 VPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQ--TLGPMVASDSFIHRCSICGAAAHLSCSL---SAHKDCKC 142 (732)
Q Consensus 75 ~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~q--g~g~~~~~~~~~~~C~~C~~~vH~~C~~---~~~~~Ck~ 142 (732)
+...+|.|..+++. +||||.+|.++||| +| || +|..|++.+|++|.. .+...|..
T Consensus 20 ~~~~~H~F~~~~~~--~PT~Cd~C~~~lWGl~kqp~G~-----------~C~~C~~~~HkrC~~k~~~v~~~C~~ 81 (84)
T 2row_A 20 ICHKGHEFIPTLYH--FPTNCEACMKPLWHMFKPPPAL-----------ECRRCHIKCHKDHMDKKEEIIAPCKV 81 (84)
T ss_dssp EEETTEEEEEECCS--SCEECSSSSSEECCSSSCCCEE-----------EESSSCCEEEHHHHHHTCTTCCCCST
T ss_pred EEcCCcceEeEcCC--CCcchhhcCHhhhccccCCCCC-----------EecCCCCccchhHhCCccccccccCc
Confidence 34678999999886 99999999999995 45 75 999999999999999 68888864
No 22
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=98.44 E-value=7.2e-08 Score=77.95 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=47.7
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCC-CCCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 78 APHTWVLESVSRGKNLNCCVCLKSMS-PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 78 ~~H~w~~~~~~~~~p~~C~vC~~~l~-~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
..|.|.++.+. +|++|.+|.+.|+ ++||| +|..|++.+|++|...+...|..+
T Consensus 7 ~~H~F~~kt~~--~~~~C~~Cg~~i~~gkq~~-----------kC~dC~~~cH~~C~~~~~~~C~p~ 60 (61)
T 4b6d_A 7 RLHDFVSKTVI--KPESCVPCGKRIKFGKLSL-----------KCRDCRVVSHPECRDRCPLPCIPT 60 (61)
T ss_dssp CCCCEEEEECC--SCEECTTTCCEECTTCEEE-----------EESSSSCEECGGGGGGSCSSCCCC
T ss_pred cceeEEeeecc--CCcccccccCEEEEeeEee-----------ECCCCCCeEchhHhhcCCCCCCCC
Confidence 47999999887 8999999999884 78886 999999999999999999999753
No 23
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.42 E-value=2.1e-07 Score=76.28 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=48.2
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCCCCCCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNETGDICDL 217 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~~~~~Cdl 217 (732)
..+|.|... ++..+++|++|++.+++.+.+ |++|..|++++|.+|..+++.. |.+
T Consensus 10 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~~q---g~~C~~C~~~~Hk~C~~~v~~~----C~~ 64 (65)
T 2enz_A 10 DMPHRFKVY------NYKSPTFCEHCGTLLWGLARQ---GLKCDACGMNVHHRCQTKVANL----CGI 64 (65)
T ss_dssp CCCCCEEEC------CCCSCCBCSSSCCBCCCSSSC---SEEESSSCCEECTTTTTTSCSC----TTT
T ss_pred CCCCccEeE------cCCCCcCchhcChhheecCCc---ccccCCCCCccCHhHHhhCcCc----CCC
Confidence 468999875 788899999999999987665 8999999999999999998876 754
No 24
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=98.40 E-value=1.1e-07 Score=110.01 Aligned_cols=81 Identities=21% Similarity=0.361 Sum_probs=60.8
Q ss_pred HhhhhHHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCccccccccccc
Q 004734 51 RRNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAA 128 (732)
Q Consensus 51 ~r~~~~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~v 128 (732)
-..+...||.+|.++..+...+ .....+|.|....+. +|++|.+|.+++|| +||| +|..|++.|
T Consensus 491 S~eeK~~Wi~~I~~ai~~~~~~-~~~~~~H~F~~~~~~--~~t~C~~C~~~l~gl~~qg~-----------~C~~C~~~v 556 (587)
T 3ky9_A 491 TRELKKKWMEQFEMAISNIYPE-NATANGHDFQMFSFE--ETTSCKACQMLLRGTFYQGY-----------RCHRCRASA 556 (587)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCT-TTTGGGCCEEEECCS--SCCBCTTTCSBCCSSSCCEE-----------EETTTCCEE
T ss_pred CHHHHHHHHHHHHHHhhhhccc-cccccCCceeEEeCC--CCcccccccccccccccCCc-----------CCCCCCCcc
Confidence 3445688999998777544322 234578999999886 99999999999995 6775 999999999
Q ss_pred CccchhhhcCCCccceec
Q 004734 129 HLSCSLSAHKDCKCVSMI 146 (732)
Q Consensus 129 H~~C~~~~~~~Ck~~~~~ 146 (732)
|++|+..+ ..|+.....
T Consensus 557 Hk~C~~~v-~~C~~~~~~ 573 (587)
T 3ky9_A 557 HKECLGRV-PPCGRHGQD 573 (587)
T ss_dssp CSGGGGGS-CCC------
T ss_pred chhhhhcC-CCCCCCCcc
Confidence 99999999 589877543
No 25
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=98.33 E-value=4.5e-07 Score=70.10 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=42.5
Q ss_pred eeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 153 HQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 153 H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
|.|... ++..+++|++|++.+++.+.+ |++|..|++++|.+|..+++..
T Consensus 1 H~F~~~------~~~~pt~C~~C~~~l~g~~~q---g~~C~~C~~~~H~~C~~~v~~~ 49 (50)
T 1ptq_A 1 HRFKVY------NYMSPTFCDHCGSLLWGLVKQ---GLKCEDCGMNVHHKCREKVANL 49 (50)
T ss_dssp CCEEEE------CCSSCCBCTTTCCBCCSSSSC---EEEETTTCCEECHHHHTTSCSC
T ss_pred CCCEee------cCCCCCCcCCCCceeeccCCc---cCEeCCCCCeECHHHhhhcCCC
Confidence 677664 778899999999999987665 9999999999999999998754
No 26
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=98.20 E-value=7e-07 Score=73.35 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=44.7
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
..+|.|... ++..+++|++|++.+++.+.+ |++|..|++++|.+|..+++..
T Consensus 11 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~~q---g~~C~~C~~~~Hk~C~~~v~~~ 62 (66)
T 1y8f_A 11 GIQHNFEVW------TATTPTYCYECEGLLWGIARQ---GMRCTECGVKCHEKCQDLLNAD 62 (66)
T ss_dssp --CCCEEEE------ECSSCCCCTTTCCCCCSSCCE---EEEETTTCCEECTTHHHHSCCC
T ss_pred CCCcccEee------eCCCCcChhhcChhhcccCcc---eeEcCCCCCeeCHHHHhhCcCc
Confidence 468999775 678899999999999987665 9999999999999999998765
No 27
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=98.18 E-value=6.9e-07 Score=98.52 Aligned_cols=78 Identities=22% Similarity=0.384 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHhhccCCcccCccCCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccC
Q 004734 52 RNINLGWMKAIARSKKNPKTRHKVPLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAH 129 (732)
Q Consensus 52 r~~~~~w~~~~~r~k~~~~~~~~~~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH 129 (732)
..+...|+.+|.++......+ .....+|.|....+. +|++|.+|.+.+|| +||+ +|..||+++|
T Consensus 320 ~~ek~~W~~~i~~ai~~~~~~-~~~~~~h~f~~~~~~--~~t~C~~C~~~~~g~~~qg~-----------~C~~C~~~~h 385 (406)
T 2vrw_B 320 RELKKKWMEQFEMAISNIYPE-NATANGHDFQMFSFE--ETTSCKACQMLLRGTFYQGY-----------RCYRCRAPAH 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-TTTGGGCCEEEECCS--SCCBCTTTCCBCCSSSSCEE-----------EETTTCCEEC
T ss_pred HHHHHHHHHHHHHHHhhhhhc-cccCCCCCCccccCC--CCCCCccccchhceeCCCCC-----------CCCCCcCccc
Confidence 344678999997766443222 223568999998776 99999999999985 6775 9999999999
Q ss_pred ccchhhhcCCCccce
Q 004734 130 LSCSLSAHKDCKCVS 144 (732)
Q Consensus 130 ~~C~~~~~~~Ck~~~ 144 (732)
++|+.+++. |....
T Consensus 386 ~~C~~~~~~-C~~~~ 399 (406)
T 2vrw_B 386 KECLGRVPP-CGRHG 399 (406)
T ss_dssp GGGGGGSCC-C----
T ss_pred hhhhhhCCC-CCCCc
Confidence 999999995 97653
No 28
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=1.9e-06 Score=74.40 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=45.9
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
..+|.|... ++..+++|++|++.+++.+.+ |++|..|++++|.+|..+++..
T Consensus 15 ~~~H~F~~~------~~~~pt~C~~C~~~l~Gl~kq---G~~C~~C~~~~Hk~C~~~v~~~ 66 (85)
T 2eli_A 15 RSKHKFKIH------TYGSPTFCDHCGSLLYGLIHQ---GMKCDTCDMNVHKQCVINVPSL 66 (85)
T ss_dssp TTSCCCEEE------CCSSCCBCSSSCCBCCCSSSC---EEECSSSCCEEETTTTTTSCSC
T ss_pred CCCcccEee------eCCCCcCCcccCccccccccC---CCcCCCcCCccCHhHHhhcCCc
Confidence 468999775 788899999999999987665 9999999999999999988765
No 29
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=98.15 E-value=1.4e-06 Score=71.24 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=44.8
Q ss_pred eeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
.+|.|... .+..+++|++|++.+++.+.+ |++|..|++++|.+|..+++..
T Consensus 8 ~~H~F~~~------~~~~pt~C~~C~~~l~Gl~~q---g~~C~~C~~~~Hk~C~~~v~~~ 58 (65)
T 3uej_A 8 GSHRFKVY------NYMSPTFCDHCGSLLWGLVKQ---GLKCEDCGMNVHHKCREKVANL 58 (65)
T ss_dssp EECCEEEE------CCSSCCBCTTTCCBCCSSSSC---EEEETTTCCEECHHHHTTSCSE
T ss_pred CCceEEeE------eCCCCCcccccChhhhccCce---eeECCCCCCeEchhHhhhCCCc
Confidence 58999775 778899999999999886655 9999999999999999998765
No 30
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=73.47 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=45.6
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
...|.|... .+..+++|++|++.+++.+.+ |++|..|++++|.+|..+++..
T Consensus 21 ~~~H~F~~~------~f~~pt~C~~C~~~lwGl~kq---G~~C~~C~~~~Hk~C~~~v~~~ 72 (77)
T 2enn_A 21 VKCHEFTAT------FFPQPTFCSVCHEFVWGLNKQ---GYQCRQCNAAIHKKCIDKVIAK 72 (77)
T ss_dssp SSSCEEEEE------CCSSCEECSSSCCEECCTTCC---EEECSSSCCEEESGGGSSCCSC
T ss_pred CCCCccEEE------cCCCCcCccccChhhcccccc---ccCcCCCCCcCCHhHHhhCcCC
Confidence 357999875 788899999999999987665 9999999999999999998765
No 31
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.7e-06 Score=73.01 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=45.3
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
...|.|... .+..+++|++|++.+++.+.+ |++|..|++++|.+|..+++..
T Consensus 15 ~~~H~F~~~------~~~~pt~C~~C~~~lwGl~kq---g~~C~~C~~~~Hk~C~~~v~~~ 66 (83)
T 2yuu_A 15 IKNHEFIAT------FFGQPTFCSVCKDFVWGLNKQ---GYKCRQCNAAIHKKCIDKIIGR 66 (83)
T ss_dssp GGGCCEEEE------CCSSCCCCSSSCCCCCSSSCC---EEEETTTCCEECTTGGGTCCSC
T ss_pred cCCCceEeE------eCCCCcChhhcChhhcccccc---ccccCCcCCeeChhhhhhCCCc
Confidence 358999875 788899999999999987665 9999999999999999987654
No 32
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=97.99 E-value=4e-06 Score=70.00 Aligned_cols=49 Identities=14% Similarity=0.375 Sum_probs=42.5
Q ss_pred ceeeeeEe-eeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSV-RWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~-~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
...|.|.. . ++..+++|++|++.+ +. +|++|..|++++|.+|..+++..
T Consensus 21 ~~~H~F~~~~------~~~~pt~C~~C~~~l---~~---qG~kC~~C~~~cHkkC~~~V~~~ 70 (72)
T 2fnf_X 21 GEGHRFVELA------LRGGPGWCDLCGREV---LR---QALRCANCKFTCHSECRSLIQLD 70 (72)
T ss_dssp CSSCCCEECC------CCSSCCBCTTTSSBC---SS---CCEECTTSSCEECTGGGGGCCSC
T ss_pred CCCCccceee------cCCCCcchhhhhHHH---Hh---CcCccCCCCCeechhhhccCcCC
Confidence 46899977 5 788899999999988 34 38999999999999999998865
No 33
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=1.6e-06 Score=72.86 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=44.7
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~ 209 (732)
...|.|... ++..+++|++|++.+++.+.+ |++|..|++++|.+|..+++.
T Consensus 15 ~~~H~F~~~------~f~~pt~C~~C~~~lwGl~kq---G~~C~~C~~~~Hk~C~~~v~~ 65 (74)
T 2db6_A 15 DKPHKFKDH------FFKKPKFCDVCARMIVLNNKF---GLRCKNCKTNIHEHCQSYVEM 65 (74)
T ss_dssp SSBCCEEEE------ECSSCEECSSSCCEECHHHHE---EEEESSSCCEECTTTTGGGSS
T ss_pred CCCCceEEe------eCCCCcCchhcChhhccccCC---ccccCCCCCccChhHHhhCCC
Confidence 468999775 678899999999999986665 999999999999999998863
No 34
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=97.96 E-value=6.1e-06 Score=70.78 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=45.9
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhc---cCCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN---NMSNE 210 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~---~~~~~ 210 (732)
...|.|+.. ++..+++|++|++.+|+.+.+ .+|+.|.-|++++|.+|.. .++..
T Consensus 22 ~~~H~F~~~------~~~~PT~Cd~C~~~lWGl~kq-p~G~~C~~C~~~~HkrC~~k~~~v~~~ 78 (84)
T 2row_A 22 HKGHEFIPT------LYHFPTNCEACMKPLWHMFKP-PPALECRRCHIKCHKDHMDKKEEIIAP 78 (84)
T ss_dssp ETTEEEEEE------CCSSCEECSSSSSEECCSSSC-CCEEEESSSCCEEEHHHHHHTCTTCCC
T ss_pred cCCcceEeE------cCCCCcchhhcCHhhhccccC-CCCCEecCCCCccchhHhCCccccccc
Confidence 468999886 889999999999999987653 1389999999999999999 67665
No 35
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=97.95 E-value=3.6e-06 Score=67.55 Aligned_cols=49 Identities=14% Similarity=0.370 Sum_probs=42.4
Q ss_pred ceeeeeEe-eeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 150 HVIHQWSV-RWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 150 ~~~H~W~~-~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
..+|.|.. . ++..+++|++|++.+ +.+ |++|..|++++|.+|..+++..
T Consensus 8 ~~~H~F~~~~------~~~~pt~C~~C~~~i---~kq---g~kC~~C~~~cH~kC~~~v~~~ 57 (59)
T 1rfh_A 8 GEGHRFVELA------LRGGPGWCDLCGREV---LRQ---ALRCANCKFTCHSECRSLIQLD 57 (59)
T ss_dssp CSSCCCEECC------CSSCCEECTTTCSEE---CSC---CEECTTTSCEECHHHHTTCCCC
T ss_pred CCCCcCeeee------ccCCCeEchhcchhh---hhC---ccEeCCCCCeEehhhhhhCcCC
Confidence 36799977 6 788899999999988 344 8999999999999999998865
No 36
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=97.95 E-value=4.2e-06 Score=65.16 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=40.3
Q ss_pred eeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 152 IHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 152 ~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
.|.|... ++..+++|++|++.++ + |++|..|++++|.+|..+++..
T Consensus 3 ~H~F~~~------~~~~pt~C~~C~~~l~----q---G~~C~~C~~~~H~~C~~~v~~~ 48 (52)
T 1faq_A 3 THNFARK------TFLKLAFCDICQKFLL----N---GFRCQTCGYKFHEHCSTKVPTM 48 (52)
T ss_dssp CCCCEEE------CCSSCEECTTSSSEEC----S---EEECTTTTCCBCSTTSSSSSSC
T ss_pred CceeEeE------eCCCCcCCCCcccccc----c---CCEeCCCCCeEChhHHhhCcCc
Confidence 5889775 7788999999999876 3 8999999999999999998765
No 37
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.92 E-value=5.5e-06 Score=63.79 Aligned_cols=44 Identities=30% Similarity=0.524 Sum_probs=38.0
Q ss_pred CCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhc
Q 004734 78 APHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAH 137 (732)
Q Consensus 78 ~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~ 137 (732)
-+|.|...++ .+++|.+|.+.|| ||+ +|..|++.+|.+|...++
T Consensus 3 i~HrF~~~t~---~~t~C~~C~k~i~--~G~-----------kC~~Ck~~cH~kC~~~vp 46 (49)
T 1kbe_A 3 VTHRFSTKSW---LSQVCNVCQKSMI--FGV-----------KCKHCRLKCHNKCTKEAP 46 (49)
T ss_dssp CCCCEEEECC---SSCCCSSSCCSSC--CEE-----------EETTTTEEESSSCTTTSC
T ss_pred CCcccCccCC---CCcCccccCceeE--CcC-----------CCCCCCCccchhhcCcCC
Confidence 3699998865 3599999999999 775 999999999999999653
No 38
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=97.89 E-value=8.2e-06 Score=62.84 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=38.8
Q ss_pred ceeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCC
Q 004734 150 HVIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSN 209 (732)
Q Consensus 150 ~~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~ 209 (732)
+++|+|... ++. +++|++|++.++ + |++|..|+.++|.+|...++.
T Consensus 2 ~i~HrF~~~------t~~-~t~C~~C~k~i~----~---G~kC~~Ck~~cH~kC~~~vp~ 47 (49)
T 1kbe_A 2 SVTHRFSTK------SWL-SQVCNVCQKSMI----F---GVKCKHCRLKCHNKCTKEAPA 47 (49)
T ss_dssp CCCCCEEEE------CCS-SCCCSSSCCSSC----C---EEEETTTTEEESSSCTTTSCC
T ss_pred CCCcccCcc------CCC-CcCccccCceeE----C---cCCCCCCCCccchhhcCcCCC
Confidence 478999775 555 499999999886 2 799999999999999998764
No 39
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=97.68 E-value=1.3e-05 Score=90.17 Aligned_cols=54 Identities=26% Similarity=0.458 Sum_probs=48.5
Q ss_pred CCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 77 LAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 77 ~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
+..|.|....+. +|++|.+|.++||| +||+ +|..|++.+|++|...+...|...
T Consensus 207 v~~h~f~~~~~~--~pt~C~~C~~~l~g~~~qg~-----------~C~~C~~~~Hk~C~~~vp~~C~~~ 262 (463)
T 3cxl_A 207 EKIHNFKVHTFR--GPHWCEYCANFMWGLIAQGV-----------KCADCGLNVHKQCSKMVPNDCKPD 262 (463)
T ss_dssp CBCCCEEEECCS--SCCBCTTTCCBCCSSSCCEE-----------EETTTCCEECHHHHTTSCSBCCGG
T ss_pred CCCcceEEeecC--CCCcchhhhhhhhhHHhcCe-----------eccccCcccccccccccccccccc
Confidence 678999999886 89999999999997 5776 999999999999999999899653
No 40
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=97.55 E-value=4.2e-05 Score=65.58 Aligned_cols=58 Identities=29% Similarity=0.527 Sum_probs=47.0
Q ss_pred CCCCCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCccc
Q 004734 76 PLAPHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCV 143 (732)
Q Consensus 76 ~~~~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~ 143 (732)
....|.|+.-++. .+.+|.||.+.+....+| ..++|.-|+++||..|..++...|...
T Consensus 24 ~~~~H~WveGNl~--~~s~C~vC~k~c~s~~~L--------~g~rC~WCq~~VH~~C~~~~~~eC~lG 81 (84)
T 1r79_A 24 IAMPHQWLEGNLP--VSAKCTVCDKTCGSVLRL--------QDWRCLWCKAMVHTSCKESLLTKCSGP 81 (84)
T ss_dssp CCBCCCEEESCCC--TTCBCSSSCCBCCCTTTC--------CCEEESSSCCEECHHHHHHCCSCBCCS
T ss_pred ccceeeEEccCCC--CCCEeCCCCCEeCCccCC--------CCCCCcccChhHHHHHHHhccCcCCCC
Confidence 3568999998775 678999999998753333 346999999999999999998888643
No 41
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=97.50 E-value=4.9e-05 Score=61.32 Aligned_cols=50 Identities=18% Similarity=0.429 Sum_probs=41.5
Q ss_pred eeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
..|.|.+. .+..+++|++|++.++ | +.++++|..|+..+|.+|...++.+
T Consensus 7 ~~H~F~~k------t~~~~~~C~~Cg~~i~--~--gkq~~kC~dC~~~cH~~C~~~~~~~ 56 (61)
T 4b6d_A 7 RLHDFVSK------TVIKPESCVPCGKRIK--F--GKLSLKCRDCRVVSHPECRDRCPLP 56 (61)
T ss_dssp CCCCEEEE------ECCSCEECTTTCCEEC--T--TCEEEEESSSSCEECGGGGGGSCSS
T ss_pred cceeEEee------eccCCcccccccCEEE--E--eeEeeECCCCCCeEchhHhhcCCCC
Confidence 47999886 5567899999999884 3 2248999999999999999998876
No 42
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=97.19 E-value=0.00012 Score=85.79 Aligned_cols=54 Identities=20% Similarity=0.455 Sum_probs=45.8
Q ss_pred CCCCCeeEeeeeCCCCCccccccCCCCCC--CCCCCCcccCCcCcccccccccccCccchhhhcCCCcc
Q 004734 76 PLAPHTWVLESVSRGKNLNCCVCLKSMSP--SQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKC 142 (732)
Q Consensus 76 ~~~~H~w~~~~~~~~~p~~C~vC~~~l~~--~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~ 142 (732)
+...|.|....+. .|+||.+|.+.|+| +||| +|..|++.+|.+|..++...|-.
T Consensus 99 ~~~~h~~~~~~~~--~~~~C~~C~~~l~g~~~qg~-----------~C~~C~~~~H~~C~~~v~~~C~~ 154 (674)
T 3pfq_A 99 PRSKHKFKIHTYS--SPTFCDHCGSLLYGLIHQGM-----------KCDTCMMNVHKRCVMNVPSLCGT 154 (674)
T ss_dssp ---CCCCCEECCS--SCCCCSSSCSCCBBSSSCEE-----------CCSSSCCCBCSSTTSSSCCCSSS
T ss_pred ccCCcceeecCCC--CCCCCCccccccchhhcCcc-----------ccccCCcchhhhhhhccCccccc
Confidence 4568999998876 89999999999985 5775 99999999999999999999953
No 43
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=96.69 E-value=0.0011 Score=72.70 Aligned_cols=49 Identities=20% Similarity=0.473 Sum_probs=42.8
Q ss_pred eeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCC
Q 004734 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (732)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~ 208 (732)
..|.|... .+..+++|.+|++.+++.+.+ |++|.-|++.||.+|...++
T Consensus 345 ~~h~f~~~------~~~~~t~C~~C~~~~~g~~~q---g~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 345 NGHDFQMF------SFEETTSCKACQMLLRGTFYQ---GYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp GGCCEEEE------CCSSCCBCTTTCCBCCSSSSC---EEEETTTCCEECGGGGGGSC
T ss_pred CCCCCccc------cCCCCCCCccccchhceeCCC---CCCCCCCcCccchhhhhhCC
Confidence 56888654 677899999999999887766 99999999999999999886
No 44
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=96.56 E-value=0.0013 Score=73.61 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=43.9
Q ss_pred eeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCCCC
Q 004734 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMSNE 210 (732)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~~~ 210 (732)
..|.|... .+..+++|++|++.+++.+.+ |++|..|+.++|.+|...++..
T Consensus 208 ~~h~f~~~------~~~~pt~C~~C~~~l~g~~~q---g~~C~~C~~~~Hk~C~~~vp~~ 258 (463)
T 3cxl_A 208 KIHNFKVH------TFRGPHWCEYCANFMWGLIAQ---GVKCADCGLNVHKQCSKMVPND 258 (463)
T ss_dssp BCCCEEEE------CCSSCCBCTTTCCBCCSSSCC---EEEETTTCCEECHHHHTTSCSB
T ss_pred CCcceEEe------ecCCCCcchhhhhhhhhHHhc---CeeccccCcccccccccccccc
Confidence 57888775 778899999999999887665 8999999999999999887755
No 45
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0028 Score=69.41 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=66.8
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHhhCC----CcEEEEeccCCccHHHHHh----------------------hh-
Q 004734 361 PDARPLLVFINKKSGAQRGDSLRQRLNLLLNP----VQVVELSSTQGPEVGLFLF----------------------RK- 413 (732)
Q Consensus 361 ~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p----~qV~dl~~t~~p~~al~l~----------------------r~- 413 (732)
..++.++||.||.. ....++.+++...|.. ..|+ +. +..+..+. .+
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~~~l~~~L~~~~~gi~V~-ve----~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAMVEFITHLHESYPEVNVI-VQ----PDVAEEISQDFKSPLENDPNRPHILYTGPEQDI 111 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTCEEE-CC----HHHHHHHHTTCCSCGGGCTTSCEEEEECCHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCeEEE-Ee----Cchhhhhhhhccccccccccccccccccchhhc
Confidence 44688999999874 3345566666655543 2332 11 11111110 00
Q ss_pred -CCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhcc
Q 004734 414 -VPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILD 492 (732)
Q Consensus 414 -~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lD 492 (732)
...+.||+.|||||+-.++..+...+ .+|.||| ++||.+-|+. +. .+++.+.|+.+.++......
T Consensus 112 ~~~~DlVIvlGGDGTlL~aa~~~~~~~--vpPiLGI-N~G~lGFLt~-~~----------~~~~~~al~~il~g~~~~~~ 177 (388)
T 3afo_A 112 VNRTDLLVTLGGDGTILHGVSMFGNTQ--VPPVLAF-ALGTLGFLSP-FD----------FKEHKKVFQEVISSRAKCLH 177 (388)
T ss_dssp HHHCSEEEEEESHHHHHHHHHTTTTSC--CCCEEEE-ECSSCCSSCC-EE----------GGGHHHHHHHHHTTCCEEEE
T ss_pred ccCCCEEEEEeCcHHHHHHHHHhcccC--CCeEEEE-ECCCcccCCc-CC----------hHHHHHHHHHHhcCCceEEE
Confidence 12478999999999999998876532 1245666 9998866643 32 13567777777776544333
Q ss_pred ce
Q 004734 493 RW 494 (732)
Q Consensus 493 rw 494 (732)
|-
T Consensus 178 r~ 179 (388)
T 3afo_A 178 RT 179 (388)
T ss_dssp EC
T ss_pred ee
Confidence 33
No 46
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=96.37 E-value=0.0022 Score=74.01 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=42.8
Q ss_pred eeeeeEeeeecccCCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhccCC
Q 004734 151 VIHQWSVRWTEITDQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNMS 208 (732)
Q Consensus 151 ~~H~W~~~~~~~~~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~~ 208 (732)
..|.|... .+..+++|.+|++.+++.+.+ |++|.-|+..||.+|...++
T Consensus 517 ~~H~F~~~------~~~~~t~C~~C~~~l~gl~~q---g~~C~~C~~~vHk~C~~~v~ 565 (587)
T 3ky9_A 517 NGHDFQMF------SFEETTSCKACQMLLRGTFYQ---GYRCHRCRASAHKECLGRVP 565 (587)
T ss_dssp GGCCEEEE------CCSSCCBCTTTCSBCCSSSCC---EEEETTTCCEECSGGGGGSC
T ss_pred cCCceeEE------eCCCCcccccccccccccccC---CcCCCCCCCccchhhhhcCC
Confidence 57888664 678899999999999887665 99999999999999999884
No 47
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=86.75 E-value=0.59 Score=48.67 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cEEEEeccCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCC
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QVVELSSTQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFV 441 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV~dl~~t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~ 441 (732)
.++.+|.|+..- .+++..+|... +++ +.. .... . +. ..+.||+.|||||+=.++..+..
T Consensus 30 mki~iv~~~~~~-------~~~l~~~L~~~g~~v~-~~~-~~~~-~---~~--~~DlvIvlGGDGT~L~aa~~~~~---- 90 (278)
T 1z0s_A 30 MRAAVVYKTDGH-------VKRIEEALKRLEVEVE-LFN-QPSE-E---LE--NFDFIVSVGGDGTILRILQKLKR---- 90 (278)
T ss_dssp CEEEEEESSSTT-------HHHHHHHHHHTTCEEE-EES-SCCG-G---GG--GSSEEEEEECHHHHHHHHTTCSS----
T ss_pred eEEEEEeCCcHH-------HHHHHHHHHHCCCEEE-Ecc-cccc-c---cC--CCCEEEEECCCHHHHHHHHHhCC----
Confidence 358899997654 33444444433 333 222 1111 1 11 35789999999998777765433
Q ss_pred CCCcEEEeeCCCcchhh
Q 004734 442 SPPPVAILPAGTGNDLA 458 (732)
Q Consensus 442 ~~ppvaILPlGTGNDlA 458 (732)
. +||-=+.+||-+=|+
T Consensus 91 ~-~PilGIN~G~lGFLt 106 (278)
T 1z0s_A 91 C-PPIFGINTGRVGLLT 106 (278)
T ss_dssp C-CCEEEEECSSSCTTC
T ss_pred C-CcEEEECCCCCcccc
Confidence 2 565556777544443
No 48
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=83.31 E-value=0.99 Score=38.77 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=38.4
Q ss_pred cccCccCCC-CCeeEeeeeCCCCCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcC
Q 004734 70 KTRHKVPLA-PHTWVLESVSRGKNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHK 138 (732)
Q Consensus 70 ~~~~~~~~~-~H~w~~~~~~~~~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~ 138 (732)
..+.+++.- .|....... .+..|+.|.+... +..++|..|++.+|..|+.....
T Consensus 27 P~~i~Hp~Hp~H~L~L~~~---~~~~C~~C~~~~~------------~~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 27 PKKVKHVLHEEHELELTRV---QVYTCDKCEEEGT------------IWSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp CSEECCSTTTTSCEEEECC---SSCCCTTTSCCCC------------SCEEECTTTCCCCCHHHHHCSSC
T ss_pred CceecCCCCCCCccEEeeC---CCeEeCCCCCcCC------------CcEEEcCCCCCeEcHHhcCCCCc
Confidence 334445655 588877532 4678999998743 23479999999999999976443
No 49
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=82.15 E-value=1.6 Score=47.04 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=37.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhhcCCCCCCCccccchHHHHHHHHHHhhhhhccc
Q 004734 416 HFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVLFWGGGLSSVERNGGLCTMLQHIEHAAVTILDR 493 (732)
Q Consensus 416 ~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~Lgwg~g~~~~~~~~~~~~iL~~i~~a~~~~lDr 493 (732)
.+.||+.|||||+=.++..+.. ..+||-=+-+| .||+ +...+. +++.+.|.++.++......|
T Consensus 109 ~DlvI~lGGDGT~L~aa~~~~~----~~~PvlGiN~G-------~LGF---Lt~~~~-~~~~~~l~~vl~g~~~v~~R 171 (365)
T 3pfn_A 109 IDFIICLGGDGTLLYASSLFQG----SVPPVMAFHLG-------SLGF---LTPFSF-ENFQSQVTQVIEGNAAVVLR 171 (365)
T ss_dssp CSEEEEESSTTHHHHHHHHCSS----SCCCEEEEESS-------SCTT---TCCEES-TTHHHHHHHHHHSCCBEEEE
T ss_pred CCEEEEEcChHHHHHHHHHhcc----CCCCEEEEcCC-------CCcc---ceeecH-HHHHHHHHHHHcCCCeEEEE
Confidence 4779999999999888776543 33454333444 3443 222222 45777888877765443333
No 50
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.08 E-value=0.9 Score=40.75 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=53.1
Q ss_pred ccccccCCCCC--CCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceecCccceeeeeEeeeecccCCCCCCC
Q 004734 93 LNCCVCLKSMS--PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEAS 170 (732)
Q Consensus 93 ~~C~vC~~~l~--~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~ 170 (732)
.+|.+|..--. .+.| ..+..+.|+.|+...|..|+...... +... -.-.|.- +.-.
T Consensus 2 ~~C~~C~~~~~~n~k~g------~~~~Li~C~~C~~~~H~~Cl~~~~~~---~~~~----~~~~W~C---------~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSG------RPEELVSCADCGRSGHPTCLQFTLNM---TEAV----KTYKWQC---------IECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTC------CCCCCEECSSSCCEECTTTTTCCHHH---HHHH----HHTTCCC---------GGGC
T ss_pred CcCccCCCCccccccCC------CCCCCeEeCCCCCccchhhCCChhhh---hhcc----CCCccCc---------cccC
Confidence 37999976432 1222 12456899999999999999753210 0000 0013532 2234
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
.|.+|++.-... .-+.|-.|.+.+|..|..
T Consensus 60 ~C~~C~~~~~~~-----~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 60 SCILCGTSENDD-----QLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp CCTTTTCCTTTT-----TEEECSSSCCEEETTTSS
T ss_pred ccCcccccCCCC-----ceEEcCCCCccccccccC
Confidence 688887754221 257999999999999986
No 51
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.24 E-value=1.6 Score=38.96 Aligned_cols=87 Identities=22% Similarity=0.507 Sum_probs=52.5
Q ss_pred ccccccCCCCC-CCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceecCccceeeeeEeeeecccCCCCCCCc
Q 004734 93 LNCCVCLKSMS-PSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEASF 171 (732)
Q Consensus 93 ~~C~vC~~~l~-~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~~ 171 (732)
.+|.+|...=. .+.| ..+..+.|+.|+...|..|+...... .... ..-.|.- +.-..
T Consensus 6 ~~C~~C~~~~~~~~~g------~~~~Ll~C~~C~~~~H~~Cl~~~~~~---~~~~----~~~~W~C---------~~C~~ 63 (112)
T 3v43_A 6 PICSFCLGTKEQNREK------KPEELISCADCGNSGHPSCLKFSPEL---TVRV----KALRWQC---------IECKT 63 (112)
T ss_dssp SSBTTTCCCTTCCTTS------CCCCCEECTTTCCEECHHHHTCCHHH---HHHH----HTSCCCC---------TTTCC
T ss_pred ccccccCCchhhCcCC------CchhceEhhhcCCCCCCchhcCCHHH---HHHh----hcccccc---------ccCCc
Confidence 58999986421 1112 12456899999999999999642110 0000 0124533 23346
Q ss_pred ccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 172 CSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 172 C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
|.+|++.-... ..-+.|..|.+.+|..|..
T Consensus 64 C~vC~~~~~~~----~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 64 CSSCRDQGKNA----DNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp BTTTCCCCCTT----CCCEECTTTCCEECGGGCS
T ss_pred cccccCcCCCc----cceEEcCCCCCeeecccCC
Confidence 88887642111 1257899999999999974
No 52
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.87 E-value=5.2 Score=35.31 Aligned_cols=80 Identities=25% Similarity=0.475 Sum_probs=53.5
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhhcCCCccceecCccceeeeeEeeeecccCCCCCCC
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEAS 170 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~~ 170 (732)
.-.+|.+|.+.=- + ...+.|+.|....|..|+...... . ..-.|.- +.-.
T Consensus 6 ~~~~C~~C~~~g~----~-------~~ll~C~~C~~~~H~~Cl~~~~~~---~-------~~~~W~C---------~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGD----L-------LDQFFCTTCGQHYHGMCLDIAVTP---L-------KRAGWQC---------PECK 55 (111)
T ss_dssp CCSCBTTTCCCCC----T-------TTSEECSSSCCEECTTTTTCCCCT---T-------TSTTCCC---------TTTC
T ss_pred CCCCCcCCCCCCC----C-------cCCeECCCCCCCcChHHhCCcccc---c-------cccCccC---------CcCC
Confidence 4468999987411 0 122699999999999999864321 0 0123532 2334
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
+|.+|++.-... .-+.|.-|.+.+|..|..
T Consensus 56 ~C~~C~~~~~~~-----~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 56 VCQNCKQSGEDS-----KMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp CCTTTCCCSCCT-----TEEECSSSCCEEEGGGSS
T ss_pred cccccCccCCCC-----CeeECCCCCcHHhHHhcC
Confidence 788888754321 258999999999999985
No 53
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=69.04 E-value=2.2 Score=36.52 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=26.3
Q ss_pred CCcccccCCCccccCCCCCCceEecccccccchhhhcc
Q 004734 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 169 ~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~ 206 (732)
+-.|+.|++...+. -|+|.-|...+|..|...
T Consensus 47 ~~~C~~C~~~~~~~------~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIW------SYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSC------EEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCc------EEEcCCCCCeEcHHhcCC
Confidence 45899999985432 589999999999999854
No 54
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=63.72 E-value=3.8 Score=30.76 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=25.6
Q ss_pred cccccCCCccccCCCCCCceEecccccccchhhh
Q 004734 171 FCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCH 204 (732)
Q Consensus 171 ~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~ 204 (732)
.|..|++.+...-+..+++.+|..|+..|-.+-.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEEEec
Confidence 6899999887655545578999999987765543
No 55
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=59.27 E-value=6.9 Score=31.10 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=26.6
Q ss_pred CCCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 167 ~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
.....|.+|+..-...-. .-+.|-.|.+.+|-.|..
T Consensus 4 ~~~~~C~vC~~~~~~~~~---~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPN---EMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCCCCBSSSCCCCCBTTB---CEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCCCC---CEEECCCCChHHHhhhCC
Confidence 445799999986432111 257999999999999985
No 56
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.26 E-value=6.6 Score=34.81 Aligned_cols=71 Identities=20% Similarity=0.415 Sum_probs=47.7
Q ss_pred CccccccCCCCCCCCCCCCcccCCcCccccc--ccccccCccchhhhcCCCccceecCccceeeeeEeeeecccCCCCCC
Q 004734 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCS--ICGAAAHLSCSLSAHKDCKCVSMIGFEHVIHQWSVRWTEITDQPSEA 169 (732)
Q Consensus 92 p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~--~C~~~vH~~C~~~~~~~Ck~~~~~~~~~~~H~W~~~~~~~~~n~~~~ 169 (732)
..||.+|.+. +..+.|+ .|-...|..|+..... .. -.|.-. .
T Consensus 15 ~~~C~~C~~~--------------G~ll~CD~~~Cp~~fH~~Cl~L~~~------P~------g~W~Cp----------~ 58 (107)
T 4gne_A 15 EDYCFQCGDG--------------GELVMCDKKDCPKAYHLLCLNLTQP------PY------GKWECP----------W 58 (107)
T ss_dssp CSSCTTTCCC--------------SEEEECCSTTCCCEECTGGGTCSSC------CS------SCCCCG----------G
T ss_pred CCCCCcCCCC--------------CcEeEECCCCCCcccccccCcCCcC------CC------CCEECC----------C
Confidence 3699999841 1247999 8999999999972110 01 135332 1
Q ss_pred CcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 170 SFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 170 ~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
-.|..|++.- .++|.+|-..+|.+|..-.
T Consensus 59 c~C~~C~k~~---------~~~C~~Cp~sfC~~c~~g~ 87 (107)
T 4gne_A 59 HQCDECSSAA---------VSFCEFCPHSFCKDHEKGA 87 (107)
T ss_dssp GBCTTTCSBC---------CEECSSSSCEECTTTCTTS
T ss_pred CCCCcCCCCC---------CcCcCCCCcchhhhccCCc
Confidence 2566766532 4899999999999998543
No 57
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=53.91 E-value=8.8 Score=39.23 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=38.4
Q ss_pred cCCccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCC
Q 004734 401 TQGPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 401 t~~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlG 452 (732)
+..|..|++.+.+...+|||-.||..|+-+-+..|.+...... .+-|+|.|
T Consensus 127 ~~d~~~ale~L~~lG~~rILTSG~~~~a~~g~~~L~~Lv~~a~-~i~Im~Gg 177 (256)
T 1twd_A 127 CANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAHRD-APIIMAGA 177 (256)
T ss_dssp CSCHHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTSSS-CCEEEEES
T ss_pred cCCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhhC-CcEEEecC
Confidence 4567788888888888999999999998776666655422234 78899976
No 58
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=53.78 E-value=25 Score=38.02 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEecc-CCcc-----HHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSST-QGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t-~~p~-----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++|+..+.+-.. ..+.+++...|...+++.+... ..|. .+.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 51 ~r~liVtd~~~~~~--~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~iA~ 127 (408)
T 1oj7_A 51 ARVLITYGGGSVKK--TGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKFIAA 127 (408)
T ss_dssp CEEEEEECSSHHHH--HSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEECCchhhh--ccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHH
Confidence 67888876543211 1156777777764444333221 1222 2445566667789999999 676666655543
Q ss_pred cC------------------CCCCCcEEEeeC--CCcch
Q 004734 438 QN------------------FVSPPPVAILPA--GTGND 456 (732)
Q Consensus 438 ~~------------------~~~~ppvaILPl--GTGND 456 (732)
.- ..+.+|+..+|. |||-.
T Consensus 128 ~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSe 166 (408)
T 1oj7_A 128 AANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSE 166 (408)
T ss_dssp HTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGG
T ss_pred HHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHH
Confidence 20 114578999997 55443
No 59
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.68 E-value=4.1 Score=33.64 Aligned_cols=32 Identities=28% Similarity=0.632 Sum_probs=26.9
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
.-..|.+|.+.+. +|. +|..|+...|..|+.+
T Consensus 14 ~i~~C~IC~~~i~--~g~-----------~C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 14 AVKICNICHSLLI--QGQ-----------SCETCGIRMHLPCVAK 45 (74)
T ss_dssp SSCBCSSSCCBCS--SSE-----------ECSSSCCEECHHHHHH
T ss_pred CCCcCcchhhHcc--cCC-----------ccCCCCchhhHHHHHH
Confidence 4578999999886 453 9999999999999985
No 60
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=53.49 E-value=4.4 Score=41.07 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=28.0
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
.-..|.+|.+.+. +|. +|..|+...|..|..+.
T Consensus 179 ~i~~C~iC~~iv~--~g~-----------~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 179 AVKICNICHSLLI--QGQ-----------SCETCGIRMHLPCVAKY 211 (238)
T ss_dssp TCCBCTTTCSBCS--SCE-----------ECSSSCCEECHHHHHHH
T ss_pred CCCcCcchhhHHh--CCc-----------ccCccChHHHHHHHHHH
Confidence 4578999999886 454 99999999999999874
No 61
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=51.66 E-value=71 Score=33.95 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC--CcE--EEEeccCCcc-----HHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p--~qV--~dl~~t~~p~-----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++++|+..+.+-...| +.+++...|.. ..+ |+-.. ..|. .+.+.+++...+.||+.|| |++..+.-.
T Consensus 41 ~~~liVtd~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~AK~ 116 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNG--SLDDLKKLLDETEISYEIFDEVE-ENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFAKA 116 (371)
T ss_dssp SEEEEEEESSGGGTSS--HHHHHHHHHHHTTCEEEEEEEEC-SSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECchHHhhcc--HHHHHHHHHHHcCCeEEEeCCcc-CCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 6899999875543322 34444444432 233 33111 2222 2445556666788999998 676666665
Q ss_pred HHhcCCC---------------CCCcEEEeeCC
Q 004734 435 IDKQNFV---------------SPPPVAILPAG 452 (732)
Q Consensus 435 l~~~~~~---------------~~ppvaILPlG 452 (732)
+.-.-.. +.+|+..+|.=
T Consensus 117 iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 117 VAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp HHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred HHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 5432111 56789999964
No 62
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=51.05 E-value=10 Score=41.01 Aligned_cols=90 Identities=9% Similarity=0.098 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhC--------CCcEE--EEeccC-Cc-----cHHHHHhhhCC--C---CeEEE
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLN--------PVQVV--ELSSTQ-GP-----EVGLFLFRKVP--H---FRVLV 421 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~--------p~qV~--dl~~t~-~p-----~~al~l~r~~~--~---~~Ivv 421 (732)
.++++|+.++.... .+.+++...|. ..+++ .+...+ .| +.+.+.+++.. . +.||+
T Consensus 36 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIa 111 (393)
T 1sg6_A 36 STTYVLVTDTNIGS----IYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIA 111 (393)
T ss_dssp CSEEEEEEEHHHHH----HHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEE
T ss_pred CCeEEEEECCcHHH----HHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEE
Confidence 36899998864332 24445554443 23443 232111 12 23445555555 4 77888
Q ss_pred EcCchhHHHHHHHHHhcCCCCCCcEEEeeC--CCcchhh
Q 004734 422 CGGDGTVGWVLNAIDKQNFVSPPPVAILPA--GTGNDLA 458 (732)
Q Consensus 422 ~GGDGTV~~VLn~l~~~~~~~~ppvaILPl--GTGNDlA 458 (732)
.|| |++..+.-.+... +.+..|+..+|. |||.|-+
T Consensus 112 lGG-Gsv~D~ak~~Aa~-~~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 112 LGG-GVIGDLTGFVAST-YMRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EES-HHHHHHHHHHHHH-GGGCCEEEEEECSHHHHHTTT
T ss_pred ECC-cHHHHHHHHHHHH-hcCCCCEEEECCchhhhhhcC
Confidence 888 7777766655421 125689999999 8999974
No 63
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=48.79 E-value=9.6 Score=38.19 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=36.6
Q ss_pred CCccHHHHHhhhCCCCeEEEEcCchh--HHHHHHHHHhcCCCCCCcEEEeeCC
Q 004734 402 QGPEVGLFLFRKVPHFRVLVCGGDGT--VGWVLNAIDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 402 ~~p~~al~l~r~~~~~~Ivv~GGDGT--V~~VLn~l~~~~~~~~ppvaILPlG 452 (732)
..|..|++.+.+...+||+-.||..| +-+-+..|.+........+-|+|.|
T Consensus 133 ~d~~~ale~L~~lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~Gg 185 (224)
T 2bdq_A 133 SDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMVGG 185 (224)
T ss_dssp TTHHHHHHHHHHTTCCEEEECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEECS
T ss_pred cCHHHHHHHHHHcCCCEEECCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCC
Confidence 56788888888888899999999998 7655555443211123468889865
No 64
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=47.79 E-value=13 Score=29.88 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=25.7
Q ss_pred CCCCCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 165 QPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 165 n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
+......|.+|++. + .-+.|--|.+.+|..|..
T Consensus 8 ~~~~~~~C~vC~~~--~------~ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 8 NLAPGARCGVCGDG--T------DVLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp CCCTTCCCTTTSCC--T------TCEECSSSCCEECHHHHC
T ss_pred CCCCCCCcCCCCCC--C------eEEECCCCCCceecccCC
Confidence 44556789999862 2 247899999999999985
No 65
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=47.35 E-value=7.1 Score=33.03 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=25.5
Q ss_pred ccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 93 ~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
..|.||..+-. +- .+.|.+|+.+.|..|..+.
T Consensus 16 ~~C~VC~~~t~--~~----------l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 16 EMCDVCEVWTA--ES----------LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCTTTCCCCS--SC----------CSSCSSSSSCCCHHHHHHH
T ss_pred cccCccccccc--cc----------eeccccccccccHhhcccc
Confidence 48999986432 22 3699999999999999985
No 66
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=43.87 E-value=35 Score=36.36 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccC-Cc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQ-GP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~-~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++|+..+.. ..+.+++...|....+..+.... .| +++.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 37 ~r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK~iA~ 110 (358)
T 3jzd_A 37 KRALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGKAIAL 110 (358)
T ss_dssp SCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHHHHHh
Confidence 57888876542 23566677777654432222111 11 22455666667789999999 777776666543
Q ss_pred cCCCCCCcEEEeeC
Q 004734 438 QNFVSPPPVAILPA 451 (732)
Q Consensus 438 ~~~~~~ppvaILPl 451 (732)
. ...|+..+|.
T Consensus 111 ~---~~~p~i~IPT 121 (358)
T 3jzd_A 111 E---TGMPIVAIPT 121 (358)
T ss_dssp H---HCCCEEEEEC
T ss_pred c---cCCCEEEEeC
Confidence 2 3567777776
No 67
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.42 E-value=16 Score=28.04 Aligned_cols=34 Identities=32% Similarity=0.863 Sum_probs=26.5
Q ss_pred CCCCCCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 164 DQPSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 164 ~n~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
|.-....+|.+|++. + .-+.|-.|.+.+|..|..
T Consensus 4 g~~~~~~~C~vC~~~--g------~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 4 GSSGHEDFCSVCRKS--G------QLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CCCSSCCSCSSSCCS--S------CCEECSSSSCEECSSSSS
T ss_pred CcCCCCCCCccCCCC--C------eEEEcCCCCcceECccCC
Confidence 344556799999984 2 147899999999999986
No 68
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=42.39 E-value=47 Score=35.46 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEeccCCc----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcC
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSSTQGP----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQN 439 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t~~p----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~ 439 (732)
++++|+..+.. ..+..++...|....+|+-.....+ +.+.+.+++...+.||+.|| |++..+.-.+.-.
T Consensus 38 ~rvliVtd~~~-----~~~~~~v~~~L~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~~- 110 (364)
T 3iv7_A 38 AKVMVIAGERE-----MSIAHKVASEIEVAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAKAIAMT- 110 (364)
T ss_dssp SSEEEECCGGG-----HHHHHHHTTTSCCSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHHHH-
T ss_pred CEEEEEECCCH-----HHHHHHHHHHcCCCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHhc-
Confidence 57788876542 2356777777875445542211111 23456677777889999999 7776666665432
Q ss_pred CCCCCcEEEeeC
Q 004734 440 FVSPPPVAILPA 451 (732)
Q Consensus 440 ~~~~ppvaILPl 451 (732)
...|+..+|.
T Consensus 111 --~~~P~i~IPT 120 (364)
T 3iv7_A 111 --TALPIVAIPT 120 (364)
T ss_dssp --HCCCEEEEEC
T ss_pred --cCCCEEEEcC
Confidence 3578888887
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.72 E-value=18 Score=29.75 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=26.2
Q ss_pred CcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 170 SFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 170 ~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
..|.+|...+. ++.+|.-|...+|..|..+-
T Consensus 16 ~~C~IC~~~i~-------~g~~C~~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 16 KICNICHSLLI-------QGQSCETCGIRMHLPCVAKY 46 (74)
T ss_dssp CBCSSSCCBCS-------SSEECSSSCCEECHHHHHHH
T ss_pred CcCcchhhHcc-------cCCccCCCCchhhHHHHHHH
Confidence 58999988663 27899999999999999754
No 70
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=40.86 E-value=50 Score=35.08 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCCcEEEEecc-CCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPVQVVELSST-QGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV~dl~~t-~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++|+..+.. ..+.+++...|....+..+... ..| +.+.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 35 ~r~liVtd~~~-----~~~~~~v~~~L~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~ 108 (353)
T 3hl0_A 35 SRALVLSTPQQ-----KGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGKAIAL 108 (353)
T ss_dssp CCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHHH
T ss_pred CEEEEEecCch-----hhHHHHHHHHHhhCCcEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHHh
Confidence 57888876542 2356677777765443212211 122 23455667777889999999 777776666543
Q ss_pred cCCCCCCcEEEeeC
Q 004734 438 QNFVSPPPVAILPA 451 (732)
Q Consensus 438 ~~~~~~ppvaILPl 451 (732)
. ...|+..+|.
T Consensus 109 ~---~~~p~i~IPT 119 (353)
T 3hl0_A 109 R---TDAAQIVIPT 119 (353)
T ss_dssp H---HCCEEEEEEC
T ss_pred c---cCCCEEEEeC
Confidence 2 4578888886
No 71
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.78 E-value=21 Score=29.03 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=26.1
Q ss_pred CCCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 167 ~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
....+|.+|++.=..... .-+-|-.|.+.||..|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~---~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSN---VILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CSSCSCSSSCCCCCCSSS---CEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCC---CEEECCCCCCccccccCC
Confidence 446799999875311111 257899999999999985
No 72
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=39.54 E-value=15 Score=31.04 Aligned_cols=36 Identities=28% Similarity=0.616 Sum_probs=27.1
Q ss_pred CCCCCcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 166 PSEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 166 ~~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
....-.|.+|...-.+. -+.|.-|.+.+|..|...+
T Consensus 12 ~~~D~~C~VC~~~t~~~------l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAES------LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSC------CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccc------eeccccccccccHhhcccc
Confidence 34456899997543322 3689999999999999765
No 73
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=39.03 E-value=33 Score=36.98 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC-Cc-EEEEeccCCcc----HHHHHhhhCCCCeEEEEcCchhHHHHHHHHHh
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP-VQ-VVELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDK 437 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p-~q-V~dl~~t~~p~----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~ 437 (732)
++++||..+..-. .+.+++...|.. .. +|+....+.+. .+.+.+++...+.||+.|| |++..+.-.+.-
T Consensus 53 ~r~liVtd~~~~~----~~~~~v~~~L~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~iA~ 127 (387)
T 3uhj_A 53 KRALVLIDRVLFD----ALSERIGKSCGDSLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIVAI 127 (387)
T ss_dssp SEEEEEECTTTHH----HHHHHC------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHHHH
T ss_pred CEEEEEECchHHH----HHHHHHHHHHHcCCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 6788888766542 356666666764 22 24332212221 2344555556788999999 777777666653
Q ss_pred cCCCCCCcEEEeeCCCcc
Q 004734 438 QNFVSPPPVAILPAGTGN 455 (732)
Q Consensus 438 ~~~~~~ppvaILPlGTGN 455 (732)
. ..+|+..+|.=.|.
T Consensus 128 ~---~~~p~i~IPTTagt 142 (387)
T 3uhj_A 128 D---TGARIVIAPTIAST 142 (387)
T ss_dssp H---TTCEEEECCSSCCC
T ss_pred h---cCCCEEEecCcccC
Confidence 2 46899999984333
No 74
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=38.03 E-value=18 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.525 Sum_probs=23.8
Q ss_pred CcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 170 SFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 170 ~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
+.|.+|++.-... .-+.|-.|.+.+|..|..
T Consensus 1 a~C~vC~~~~~~~-----~ll~Cd~C~~~~H~~Cl~ 31 (51)
T 1f62_A 1 ARCKVCRKKGEDD-----KLILCDECNKAFHLFCLR 31 (51)
T ss_dssp CCCTTTCCSSCCS-----CCEECTTTCCEECHHHHC
T ss_pred CCCCCCCCCCCCC-----CEEECCCCChhhCcccCC
Confidence 4699998864221 247899999999999985
No 75
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.64 E-value=14 Score=31.31 Aligned_cols=34 Identities=26% Similarity=0.573 Sum_probs=25.6
Q ss_pred ccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 93 LNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 93 ~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
.+|.+|...-... .+..+.|+.|...+|..|+.-
T Consensus 17 ~~C~vC~~~~~~~---------~~~ll~CD~C~~~yH~~Cl~P 50 (88)
T 1wev_A 17 LACVVCRQMTVAS---------GNQLVECQECHNLYHQDCHKP 50 (88)
T ss_dssp CSCSSSCCCCCCT---------TCCEEECSSSCCEEETTTSSS
T ss_pred CcCCCCCCCCCCC---------CCceEECCCCCCeEcCccCCC
Confidence 5899999753211 123579999999999999874
No 76
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=34.08 E-value=1.2e+02 Score=32.29 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCC---ChhhHHHHHHHhhCCCcEEEEecc-CCc-----cHHHHHhhhCCCCeEEEEcCchhHHHHHHH
Q 004734 364 RPLLVFINKKSGAQ---RGDSLRQRLNLLLNPVQVVELSST-QGP-----EVGLFLFRKVPHFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 364 ~pllV~vNPkSG~~---~g~~~~~~~~~lL~p~qV~dl~~t-~~p-----~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~ 434 (732)
++++|+..+..... -.+++...++. ....+..+... ..| +.+.+.+++...+.||+.|| |++..+.-.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~--~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~ 110 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLRE--AGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKG 110 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHH--TTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHH--cCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHH
Confidence 68899988766543 33444444433 12233222211 122 22455667667788999998 666666555
Q ss_pred HHhc--------CC-------CCCCcEEEeeCC
Q 004734 435 IDKQ--------NF-------VSPPPVAILPAG 452 (732)
Q Consensus 435 l~~~--------~~-------~~~ppvaILPlG 452 (732)
+.-. ++ .+.+|+..+|.=
T Consensus 111 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 143 (387)
T 3bfj_A 111 IGIAATHEGDLYQYAGIETLTNPLPPIVAVNTT 143 (387)
T ss_dssp HHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECS
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeCC
Confidence 5321 01 146789999973
No 77
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=32.86 E-value=21 Score=36.02 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=26.6
Q ss_pred CCcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 169 ~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
-..|..|.+.+. +|.+|.-|+..+|..|....
T Consensus 180 i~~C~iC~~iv~-------~g~~C~~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCETCGIRMHLPCVAKY 211 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECSSSCCEECHHHHHHH
T ss_pred CCcCcchhhHHh-------CCcccCccChHHHHHHHHHH
Confidence 358999988653 27999999999999999774
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.84 E-value=23 Score=27.82 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=26.4
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
.++||.+|...--. . ..-.+|+.|..=.|..|+...
T Consensus 5 e~~~C~~C~~~~~~-~---------~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 5 SSGQCGACGESYAA-D---------EFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp SCCCCSSSCCCCCS-S---------SCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCCCCccCC-C---------CCEEEccCCCCCCCccccCcC
Confidence 56899999865321 1 122699999999999999764
No 79
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.78 E-value=21 Score=29.78 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEeccCCccHHHHHhhh
Q 004734 359 MPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELSSTQGPEVGLFLFRK 413 (732)
Q Consensus 359 ~p~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~~t~~p~~al~l~r~ 413 (732)
+....+|+.||+|..|-+. ...|+.--....| ||+.++..|++..+-.++
T Consensus 47 mkdngkplvvfvngasqnd-----vnefqneakkegvsydvlkstdpeeltqrvre 97 (112)
T 2lnd_A 47 MKDNGKPLVVFVNGASQND-----VNEFQNEAKKEGVSYDVLKSTDPEELTQRVRE 97 (112)
T ss_dssp HTTCCSCEEEEECSCCHHH-----HHHHHHHHHHHTCEEEEEECCCHHHHHHHHHH
T ss_pred HHhcCCeEEEEecCccccc-----HHHHHHHHHhcCcchhhhccCCHHHHHHHHHH
Confidence 3456799999999766432 2333332222345 888777889887665554
No 80
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=32.75 E-value=63 Score=34.41 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC-cE--EEEeccC-Ccc-----HHHHHhhhCC---CCeEEEEcCchhHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV-QV--VELSSTQ-GPE-----VGLFLFRKVP---HFRVLVCGGDGTVGW 430 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~-qV--~dl~~t~-~p~-----~al~l~r~~~---~~~Ivv~GGDGTV~~ 430 (732)
.++++|+.++.... .+.+++...|... ++ +.+...+ .|. .+.+.+++.. .+.||+.|| |++..
T Consensus 34 ~~k~liVtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv~D 108 (368)
T 2gru_A 34 FDQYIMISDSGVPD----SIVHYAAEYFGKLAPVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLTGN 108 (368)
T ss_dssp CSEEEEEEETTSCH----HHHHHHHHHHTTTSCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHhccceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHHHH
Confidence 36899999876653 2566666666543 33 2332211 111 1234445544 567888888 77777
Q ss_pred HHHHHHhcCCCCCCcEEEeeC
Q 004734 431 VLNAIDKQNFVSPPPVAILPA 451 (732)
Q Consensus 431 VLn~l~~~~~~~~ppvaILPl 451 (732)
+.-.+... +.+.+|+..+|.
T Consensus 109 ~ak~~Aa~-~~rgip~i~IPT 128 (368)
T 2gru_A 109 VAGVAAGM-MFRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHH-BTTCCEEEEEEC
T ss_pred HHHHHHHH-hcCCCCEEEECC
Confidence 76666532 235789999998
No 81
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.51 E-value=25 Score=29.72 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=25.2
Q ss_pred CCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 169 ~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
..+|.+|++.-...-. .-+.|--|.+.||-.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~---~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASGN---QLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTTC---CEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCCC---ceEECCCCCCeEcCccCC
Confidence 4689999986432111 257899999999999975
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=31.35 E-value=19 Score=28.39 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=26.0
Q ss_pred CccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 92 p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
-.+|.+|...-... .+..+.|+.|...+|..|+.-
T Consensus 6 ~~~C~vC~~~~~~~---------~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEA---------PNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBT---------TBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCC---------CCCEEECCCCChHHHhhhCCC
Confidence 36899999642211 134589999999999999875
No 83
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=29.21 E-value=68 Score=33.75 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=39.3
Q ss_pred ccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhH
Q 004734 404 PEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLAR 459 (732)
Q Consensus 404 p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR 459 (732)
.+.+.+.+++..-+.+++.|||||..-+ +.|.+. ..++--+|-==-||+.-
T Consensus 83 ~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~----~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 83 RAVAIENLKKRGIDALVVIGGDGSYMGA-MRLTEM----GFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT----TCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHcCCCEEEEECCCchHHHH-HHHHhh----CCCEEEEeccccCCCCC
Confidence 3456667777778899999999998765 555553 57888899999999973
No 84
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=27.93 E-value=98 Score=32.49 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC--CcE--EEEeccCCccH-HHHH--hhhCCCCeEEEEcCchhHHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQV--VELSSTQGPEV-GLFL--FRKVPHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p--~qV--~dl~~t~~p~~-al~l--~r~~~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++++|+..+..-. .+.+++...|.. .++ |+. ...+..+ ..+. +++...+.||+.|| |++..+.-.+.
T Consensus 35 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~-~~~~~~~~v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~vA 108 (354)
T 3ce9_A 35 KRVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVET-VKNIDFDEIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMA 108 (354)
T ss_dssp SEEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEE-ECCCBHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEec-CCCCCHHHHHHHHHhhhcCCCEEEEECC-hHHHHHHHHHH
Confidence 5789998865533 245666666643 233 432 2222222 2233 33334578888888 77766666654
Q ss_pred hcCCCCCCcEEEeeCCCcc
Q 004734 437 KQNFVSPPPVAILPAGTGN 455 (732)
Q Consensus 437 ~~~~~~~ppvaILPlGTGN 455 (732)
- .+..|+..+|.=.|.
T Consensus 109 ~---~~~~p~i~IPTT~~t 124 (354)
T 3ce9_A 109 F---LRKLPFISVPTSTSN 124 (354)
T ss_dssp H---HHTCCEEEEESCCSS
T ss_pred h---hcCCCEEEecCcccC
Confidence 2 246899999975444
No 85
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=27.73 E-value=1.1e+02 Score=32.86 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE--EEEeccC-Cc--c---HHHHHhhhCCC---CeEEEEcCchhHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV--VELSSTQ-GP--E---VGLFLFRKVPH---FRVLVCGGDGTVG 429 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV--~dl~~t~-~p--~---~al~l~r~~~~---~~Ivv~GGDGTV~ 429 (732)
.++++|+.++.... .+.+++...|... ++ +.+...+ .| + .+.+.+++... +.||+.|| |++.
T Consensus 62 ~~rvlIVtd~~v~~----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gsv~ 136 (390)
T 3okf_A 62 KQKVVIVTNHTVAP----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GVIG 136 (390)
T ss_dssp TCEEEEEEETTTHH----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cHHh
Confidence 47899999876543 3556666666432 33 3332211 11 1 23344444433 67888888 7777
Q ss_pred HHHHHHHhcCCCCCCcEEEeeC
Q 004734 430 WVLNAIDKQNFVSPPPVAILPA 451 (732)
Q Consensus 430 ~VLn~l~~~~~~~~ppvaILPl 451 (732)
.+.-.+... +...+|+..+|.
T Consensus 137 D~ak~~Aa~-~~rgip~I~IPT 157 (390)
T 3okf_A 137 DLVGFAAAC-YQRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHH-BTTCCEEEEEEC
T ss_pred hHHHHHHHH-hcCCCCEEEeCC
Confidence 776665321 235789999997
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.12 E-value=33 Score=29.04 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=25.3
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
...+|.+|+..=..... .-+.|-.|.+.||-.|..
T Consensus 24 ~~~~C~vC~~~~s~~~~---~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 24 EDAVCSICMDGESQNSN---VILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCSSCCSSSSCSEE---EEEECSSSCCCCCHHHHT
T ss_pred CCCcCCcCCCCCCCCCC---CEEECCCCCchhhcccCC
Confidence 45799999875211111 157899999999999985
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=26.79 E-value=34 Score=26.75 Aligned_cols=30 Identities=33% Similarity=0.956 Sum_probs=23.5
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
...+|.+|+.. +. -+.|-.|.+.+|..|..
T Consensus 8 ~~~~C~vC~~~--g~------ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 8 HMEFCRVCKDG--GE------LLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp SCSSCTTTCCC--SS------CBCCSSSCCCBCSSSSS
T ss_pred CCCcCCCCCCC--CC------EEEcCCCCHHHcccccC
Confidence 35689999862 21 46799999999999986
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=26.78 E-value=26 Score=28.48 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=26.7
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
.-.+|.+|.+.-.. ..+..+.|+.|...+|..|..-
T Consensus 15 ~~~~C~vC~~~~s~---------~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 15 EDAVCSICMDGESQ---------NSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp SSCSCSSSCCCCCC---------SSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCC---------CCCCEEECCCCCCccccccCCC
Confidence 45799999875311 1234579999999999999874
No 89
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=26.71 E-value=66 Score=33.80 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=39.2
Q ss_pred CccHHHHHhhhCCCCeEEEEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhh
Q 004734 403 GPEVGLFLFRKVPHFRVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 403 ~p~~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
..+.+.+.+++..-+.+++.|||||..-+ +.|.+. ..++--+|-==-||+.
T Consensus 81 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~----~i~vvgiPkTIDNDl~ 131 (319)
T 1zxx_A 81 GQLAGIEQLKKHGIDAVVVIGGDGSYHGA-LQLTRH----GFNSIGLPGTIDNDIP 131 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT----TCCEEEEEEETTCCCT
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHH-HHHHHh----CCCEEEEeecccCCCC
Confidence 34456667777778899999999998655 555553 4788889999999996
No 90
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=25.89 E-value=61 Score=36.12 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=37.8
Q ss_pred cHHHHHhhhCCCCeEEEEcCchhHHHHH---HHHHhcCCCCCCcEEEeeCCCcchhh
Q 004734 405 EVGLFLFRKVPHFRVLVCGGDGTVGWVL---NAIDKQNFVSPPPVAILPAGTGNDLA 458 (732)
Q Consensus 405 ~~al~l~r~~~~~~Ivv~GGDGTV~~VL---n~l~~~~~~~~ppvaILPlGTGNDlA 458 (732)
+.+.+.+++..-+.+++.|||||..-+. +.+.+.. .+.+|--||-==-||+.
T Consensus 179 ~~i~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~g--~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 179 KEMVDTLERLGVNILFTVGGDGTQRGALVISQEAKRRG--VDISVFGVPKTIDNDLS 233 (487)
T ss_dssp HHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHHHHT--CCCEEEEEECCTTSSCC
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHhC--CCceEEeccccccCCCC
Confidence 3566666666778999999999987443 2333333 35789999999999996
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.66 E-value=44 Score=25.85 Aligned_cols=29 Identities=38% Similarity=0.995 Sum_probs=23.8
Q ss_pred CCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 169 ~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
..+|.+|++. + .-+.|-.|.+.+|-.|..
T Consensus 5 ~~~C~vC~~~--g------~ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 5 EDFCSVCRKS--G------QLLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp CSSCTTTCCC--S------SCEECSSSSCEECGGGSS
T ss_pred CCCCcCCCCC--C------cEEEcCCCCcCEECCcCC
Confidence 4689999874 2 147899999999999986
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.44 E-value=35 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=24.0
Q ss_pred CccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 92 p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
-.+|.+|.+. +..+.|+.|....|..|+.-
T Consensus 9 ~~~C~vC~~~--------------g~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 9 MEFCRVCKDG--------------GELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp CSSCTTTCCC--------------SSCBCCSSSCCCBCSSSSSS
T ss_pred CCcCCCCCCC--------------CCEEEcCCCCHHHcccccCC
Confidence 3689999862 12379999999999999975
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=25.38 E-value=32 Score=27.89 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=26.7
Q ss_pred CCCCcccccCCCccccCCCCCCceEecccccccchhhhcc
Q 004734 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 167 ~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~ 206 (732)
....+|.+|++.-.+. .-+.|-.|.+-+|..|...
T Consensus 16 ~~~~~C~~C~~~~~~~-----~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGS-----PMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSC-----CEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCC-----CEEEcCCCCcccccccCCC
Confidence 3446899998875432 2478999999999999864
No 94
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=25.00 E-value=39 Score=26.40 Aligned_cols=31 Identities=29% Similarity=0.751 Sum_probs=24.7
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhcc
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~ 206 (732)
...+|.+|++. + .-+.|-.|.+.+|-.|..-
T Consensus 10 ~~~~C~vC~~~--g------~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 10 HQDYCEVCQQG--G------EIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp CCSSCTTTSCC--S------SEEECSSSSCEEEHHHHCT
T ss_pred CCCCCccCCCC--C------cEEECCCCChhhhhhccCC
Confidence 35699999873 2 2578999999999999863
No 95
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=24.50 E-value=75 Score=27.68 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCCCceEEEEEeccee--------EEEec--------CCCCcchhhHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 004734 669 WFQQPCTLAISHHGQA--------FMLKR--------AAEEPLGHAAAIITDVLESAETNRVINASQKRALLQ 725 (732)
Q Consensus 669 ~~~~P~~I~I~~~~~~--------~ml~~--------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 725 (732)
+.-.+|.+++.|.... ++.|. ....+.+.+...+.|-...|.+.|+|+.++-+..|.
T Consensus 29 ~lGH~C~~~v~P~~kr~elyf~G~mWCPgWT~i~Ges~TrSrsgvv~~a~rDFV~KA~~~gLiT~edA~~wL~ 101 (102)
T 2job_A 29 LLGHECKFTVKPYLKRFQVYYKGRMWCPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQKGLISQQEANQWLS 101 (102)
T ss_dssp ETTEEEEEEEEEEEETTEEEEEEEEECBTTBSCEEEEEESCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred EcCCeEEEEeccceeeeeEEEEEEEecCCccceecccccccccchhhhHHHHHHHHHHHcCCccHHHHHHHhh
Confidence 3446777777665542 22332 123555777888899999999999999999888774
No 96
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=24.35 E-value=88 Score=29.83 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEEe---ccCCccHHHHHhhhCC----CCeEEEEcCchhHHHHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VELS---STQGPEVGLFLFRKVP----HFRVLVCGGDGTVGWVLNA 434 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl~---~t~~p~~al~l~r~~~----~~~Ivv~GGDGTV~~VLn~ 434 (732)
++|...|+ .|+.....+.++....|+...+ ||+. ....|+...++.++.. ...|.++||.+-+.-|+.+
T Consensus 10 ~~~~V~Ii---mGS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 86 (170)
T 1xmp_A 10 MKSLVGVI---MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAA 86 (170)
T ss_dssp -CCSEEEE---ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHT
T ss_pred CCCcEEEE---ECcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHh
Confidence 45666655 3444434455555555544333 5543 3356888888887653 2337788999999999988
Q ss_pred HHhcCCCCCCcEEEeeCCCc
Q 004734 435 IDKQNFVSPPPVAILPAGTG 454 (732)
Q Consensus 435 l~~~~~~~~ppvaILPlGTG 454 (732)
+.. .|.||+ |.-++
T Consensus 87 ~t~-----~PVIgV-P~~~~ 100 (170)
T 1xmp_A 87 KTN-----LPVIGV-PVQSK 100 (170)
T ss_dssp TCC-----SCEEEE-EECCT
T ss_pred ccC-----CCEEEe-eCCCC
Confidence 753 355655 55444
No 97
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=24.21 E-value=1.4e+02 Score=31.20 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE--EEEeccC---Cc---cHHHHHhhhCCC---CeEEEEcCchhHHHH
Q 004734 363 ARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV--VELSSTQ---GP---EVGLFLFRKVPH---FRVLVCGGDGTVGWV 431 (732)
Q Consensus 363 ~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV--~dl~~t~---~p---~~al~l~r~~~~---~~Ivv~GGDGTV~~V 431 (732)
.++++|+.++..... +.+++...|....+ +.+...+ .. +.+.+.+++... +.||+.|| |++..+
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~ 100 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDM 100 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHH
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHHH
Confidence 367899988655432 46677777754443 3332211 11 123445555544 77888888 777776
Q ss_pred HHHHHhcCCCCCCcEEEeeCC
Q 004734 432 LNAIDKQNFVSPPPVAILPAG 452 (732)
Q Consensus 432 Ln~l~~~~~~~~ppvaILPlG 452 (732)
.-.+... +.+..|+..+|.=
T Consensus 101 ak~~A~~-~~rgip~i~IPTT 120 (343)
T 3clh_A 101 VGFASSI-YFRGIDFINIPTT 120 (343)
T ss_dssp HHHHHHH-BTTCCEEEEEECS
T ss_pred HHHHHHH-hccCCCEEEeCCc
Confidence 6655421 2357899999963
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=24.03 E-value=36 Score=27.02 Aligned_cols=30 Identities=30% Similarity=0.600 Sum_probs=24.2
Q ss_pred CccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 92 NLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 92 p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
-.+|.+|.+. +..+.|+.|....|..|+.-
T Consensus 8 ~~~C~vC~~~--------------g~ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG--------------GELICCDGCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC--------------SSCEECSSCCCEECTTTSSS
T ss_pred CCCCccCCCC--------------CCEEEcCCCChhhcccccCC
Confidence 4699999963 12379999999999999974
No 99
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.72 E-value=33 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=25.5
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
.+.|| +|+..-.+ ..-.+|+.|..=.|..|+...
T Consensus 18 ~~~~C-iC~~~~~~-----------~~MIqCd~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-----------RPMIECNECHTWIHLSCAKIR 51 (68)
T ss_dssp TCCCS-TTCCCCTT-----------CCEEECTTTCCEEETTTTTCC
T ss_pred CceEe-ECCCcCCC-----------CCEEECCCCCccccccccCcC
Confidence 56899 99864321 123699999999999999764
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=23.70 E-value=52 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.855 Sum_probs=24.1
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
...+|.+|+.. + .-+.|-.|.+.+|..|..
T Consensus 7 ~~~~C~vC~~~--g------~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 7 NEDECAVCRDG--G------ELICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCCSBSSSSCC--S------SCEECSSCCCEECTTTSS
T ss_pred CCCCCccCCCC--C------CEEEcCCCChhhcccccC
Confidence 35699999873 2 147899999999999986
No 101
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=23.52 E-value=54 Score=31.19 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=26.2
Q ss_pred EEcCchhHHHHHHHHHhcCCCCCCcEEEeeCCCcchhhHhh
Q 004734 421 VCGGDGTVGWVLNAIDKQNFVSPPPVAILPAGTGNDLARVL 461 (732)
Q Consensus 421 v~GGDGTV~~VLn~l~~~~~~~~ppvaILPlGTGNDlAR~L 461 (732)
-.|||-| .+++.-+.+.-...+|-+.+|=+|| ||+++..
T Consensus 57 Gi~G~tt-~~~l~r~~~~v~~~~Pd~vvi~~G~-ND~~~~~ 95 (209)
T 4hf7_A 57 GISGQTS-YQFLLRFREDVINLSPALVVINAGT-NDVAENT 95 (209)
T ss_dssp ECTTCCH-HHHHHHHHHHTGGGCCSEEEECCCH-HHHTTSS
T ss_pred ccCcccH-HHHHHHHHHHHHhcCCCEEEEEeCC-CcCcccc
Confidence 4578855 4566666543233468899999997 9987644
No 102
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=23.20 E-value=1.1e+02 Score=32.22 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCCC--cE-EEEeccCCcc----HHHHHhhhCCCCeEEEEcCchhHHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNPV--QV-VELSSTQGPE----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAID 436 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p~--qV-~dl~~t~~p~----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l~ 436 (732)
++++|+..+.+-. .+.+++...|... ++ +.+..-+.+. .+.+.+++...+.||+.|| |++..+.-.+.
T Consensus 32 ~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA 106 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAVA 106 (370)
T ss_dssp SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHHH
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHHH
Confidence 6889998765533 2455566666432 33 2232112222 2445566667788999998 77776666654
Q ss_pred hcCCCCCCcEEEeeCC
Q 004734 437 KQNFVSPPPVAILPAG 452 (732)
Q Consensus 437 ~~~~~~~ppvaILPlG 452 (732)
-. ..+|+..+|.=
T Consensus 107 ~~---~~~p~i~IPTT 119 (370)
T 1jq5_A 107 DE---LDAYIVIVPTA 119 (370)
T ss_dssp HH---HTCEEEEEESS
T ss_pred Hh---cCCCEEEeccc
Confidence 32 45899999973
No 103
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=23.15 E-value=20 Score=28.44 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=9.9
Q ss_pred eEEEEcCchhH
Q 004734 418 RVLVCGGDGTV 428 (732)
Q Consensus 418 ~Ivv~GGDGTV 428 (732)
-|+||+||||+
T Consensus 40 GViVg~~dgtv 50 (65)
T 2x9a_A 40 GIGIGYDNDTS 50 (65)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEECCCCCE
Confidence 48999999997
No 104
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.13 E-value=35 Score=27.55 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=25.1
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
.+.|| +|...-- .| ..-++|+.|..=.|..|+...
T Consensus 15 ~~~~C-~C~~~~~--~g--------~~mI~Cd~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 15 WKVDC-KCGTKDD--DG--------ERMLACDGCGVWHHTRCIGIN 49 (72)
T ss_dssp SEECC-TTCCCSC--CS--------SCEEECSSSCEEEETTTTTCC
T ss_pred cceEe-eCCCccC--CC--------CcEEECCCCCCccCCeeeccC
Confidence 56799 7986431 11 122699999999999999764
No 105
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=22.91 E-value=1.6e+02 Score=31.67 Aligned_cols=85 Identities=20% Similarity=0.182 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHhhCC--CcEEEEec-cCCcc-----HHHHHhhhCCCCeEEEEcCchhHHHHHHHH
Q 004734 364 RPLLVFINKKSGAQRGDSLRQRLNLLLNP--VQVVELSS-TQGPE-----VGLFLFRKVPHFRVLVCGGDGTVGWVLNAI 435 (732)
Q Consensus 364 ~pllV~vNPkSG~~~g~~~~~~~~~lL~p--~qV~dl~~-t~~p~-----~al~l~r~~~~~~Ivv~GGDGTV~~VLn~l 435 (732)
++++|+..+.+-... .+.+++...|.. ..+..+.. ...|. .+.+.+++...+.||+.|| |++..+.-.+
T Consensus 44 ~r~liVtd~~~~~~~--g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~i 120 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN--GVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKAV 120 (407)
T ss_dssp CEEEEEECSSHHHHS--SHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEECchHHhhc--cHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHHHH
Confidence 678888764322111 144555555532 23322221 11222 2455667767789999998 6666665555
Q ss_pred HhcC---------------CCCCCcEEEeeC
Q 004734 436 DKQN---------------FVSPPPVAILPA 451 (732)
Q Consensus 436 ~~~~---------------~~~~ppvaILPl 451 (732)
.-.- ..+.+|+..+|.
T Consensus 121 A~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 121 AAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 4310 124678999997
No 106
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.57 E-value=30 Score=25.79 Aligned_cols=31 Identities=35% Similarity=0.621 Sum_probs=23.4
Q ss_pred cccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhh
Q 004734 94 NCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLS 135 (732)
Q Consensus 94 ~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~ 135 (732)
+|.+|.+.=. .+..+.|+.|....|..|+.-
T Consensus 2 ~C~vC~~~~~-----------~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGE-----------DDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSC-----------CSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCC-----------CCCEEECCCCChhhCcccCCC
Confidence 6889986421 123479999999999999964
No 107
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=21.79 E-value=2.4e+02 Score=27.08 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=49.1
Q ss_pred cCCCCCCcEEEEEcCCCCCCChhhHHHHHHHhhCCCcE-EEE---eccCCccHHHHHhhhCC--C--CeEEEEcCchhHH
Q 004734 358 DMPPDARPLLVFINKKSGAQRGDSLRQRLNLLLNPVQV-VEL---SSTQGPEVGLFLFRKVP--H--FRVLVCGGDGTVG 429 (732)
Q Consensus 358 ~~p~~~~pllV~vNPkSG~~~g~~~~~~~~~lL~p~qV-~dl---~~t~~p~~al~l~r~~~--~--~~Ivv~GGDGTV~ 429 (732)
|-+..++|+..|| -|+.....+.++....|+...| |++ +....|+...++++++. . ..|.++||.+-+-
T Consensus 16 p~~~~mkp~V~Ii---mGS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp 92 (181)
T 4b4k_A 16 PRGSHMKSLVGVI---MGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP 92 (181)
T ss_dssp ------CCSEEEE---ESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH
T ss_pred cCCCCCCccEEEE---ECCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch
Confidence 3344567765444 2443334566666666654444 554 33456888888888763 2 2367789999999
Q ss_pred HHHHHHHhcCCCCCCcEEEeeC
Q 004734 430 WVLNAIDKQNFVSPPPVAILPA 451 (732)
Q Consensus 430 ~VLn~l~~~~~~~~ppvaILPl 451 (732)
-++.++. ..|.||| |.
T Consensus 93 GvvAa~T-----~~PVIGV-Pv 108 (181)
T 4b4k_A 93 GMVAAKT-----NLPVIGV-PV 108 (181)
T ss_dssp HHHHTTC-----CSCEEEE-EC
T ss_pred hhHHhcC-----CCCEEEE-ec
Confidence 9888764 2455665 54
No 108
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=21.74 E-value=1.8e+02 Score=27.33 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=41.8
Q ss_pred hhHHHHHHHhhCCCcE-EEE---eccCCccHHHHHhhhCCCC-eEEEEcCchhHHHHHHHHHhcCCCCCCcEEEee
Q 004734 380 DSLRQRLNLLLNPVQV-VEL---SSTQGPEVGLFLFRKVPHF-RVLVCGGDGTVGWVLNAIDKQNFVSPPPVAILP 450 (732)
Q Consensus 380 ~~~~~~~~~lL~p~qV-~dl---~~t~~p~~al~l~r~~~~~-~Ivv~GGDGTV~~VLn~l~~~~~~~~ppvaILP 450 (732)
..+.++....|+...+ ||+ +....|+...++.++.... .|.++||.|-+.-|+.++.. .|.||+=+
T Consensus 12 ~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~-----~PVIgVP~ 82 (157)
T 2ywx_A 12 LKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTT-----KPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTCS-----SCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhccC-----CCEEEecC
Confidence 3445555444443333 444 3345688888888876544 47788999999999998753 35566544
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=21.68 E-value=57 Score=27.00 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=27.2
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhcc
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNN 206 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~ 206 (732)
....|..|++.+.- +.- --+|.-|+..+=.+|...
T Consensus 18 ~~~~C~~C~~~Fs~-~~R---rHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSI-SRR---KHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBT-TBC---CEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccC-ccc---cccCCCCCCEEChHHhCC
Confidence 34689999998753 322 479999999999999865
No 110
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.54 E-value=73 Score=24.80 Aligned_cols=37 Identities=22% Similarity=0.493 Sum_probs=27.5
Q ss_pred CCCCcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 167 SEASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 167 ~~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
....+|.+|+++-... . .-+.|--|..=+|.+|....
T Consensus 4 ~e~~~C~~C~~~~~~~-~---~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 4 GSSGQCGACGESYAAD-E---FWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp SSCCCCSSSCCCCCSS-S---CEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCCCCCccCCC-C---CEEEccCCCCCCCccccCcC
Confidence 4567899999875321 1 15789999999999998653
No 111
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.42 E-value=63 Score=25.89 Aligned_cols=34 Identities=24% Similarity=0.635 Sum_probs=25.9
Q ss_pred CCCcccccCCCccccCCCCCCceEecccccccchhhhccC
Q 004734 168 EASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHNNM 207 (732)
Q Consensus 168 ~~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~~~ 207 (732)
...+| +|+++-.+.+ -+.|.-|+.=+|.+|....
T Consensus 18 ~~~~C-iC~~~~~~~~-----MIqCd~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRP-----MIECNECHTWIHLSCAKIR 51 (68)
T ss_dssp TCCCS-TTCCCCTTCC-----EEECTTTCCEEETTTTTCC
T ss_pred CceEe-ECCCcCCCCC-----EEECCCCCccccccccCcC
Confidence 44688 9998654322 5789999999999999653
No 112
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.33 E-value=30 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=24.9
Q ss_pred CCccccccCCCCCCCCCCCCcccCCcCcccccccccccCccchhhh
Q 004734 91 KNLNCCVCLKSMSPSQTLGPMVASDSFIHRCSICGAAAHLSCSLSA 136 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg~g~~~~~~~~~~~C~~C~~~vH~~C~~~~ 136 (732)
.+.|| +|...--. . +.-++|+.|..=.|..|+...
T Consensus 11 ~~~~C-~C~~~~d~-~---------~~MIqCd~C~~WfH~~Cvgl~ 45 (79)
T 1wep_A 11 VPVYC-LCRQPYNV-N---------HFMIECGLCQDWFHGSCVGIE 45 (79)
T ss_dssp CCCCS-TTSCSCCS-S---------SCEEEBTTTCCEEEHHHHTCC
T ss_pred CccEE-EcCCccCC-C---------CceEEcCCCCCcEEeeecCcc
Confidence 56788 89874311 1 122699999999999998753
No 113
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.70 E-value=44 Score=32.30 Aligned_cols=29 Identities=38% Similarity=0.975 Sum_probs=22.9
Q ss_pred CCcccccCCCccccCCCCCCceEecccccccchhhhc
Q 004734 169 ASFCSYCEEPCSGSFLGGSPIWCCLWCQRLVHVDCHN 205 (732)
Q Consensus 169 ~~~C~~C~~~c~~~~~~~~~~~~C~WC~~~vH~~C~~ 205 (732)
..+|.+|+.. +. -+.|..|.+.+|-.|..
T Consensus 2 ~~~C~~C~~~--g~------ll~Cd~C~~~~H~~Cl~ 30 (189)
T 2ro1_A 2 ATICRVCQKP--GD------LVMCNQCEFCFHLDCHL 30 (189)
T ss_dssp CCCBTTTCCC--SS------CCCCTTTCCBCCSTTST
T ss_pred CCcCccCCCC--Cc------eeECCCCCchhccccCC
Confidence 4689999863 21 35799999999999984
No 114
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=20.49 E-value=36 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=0.0
Q ss_pred CCccccccCCCCCCCCC---CCCcccCCcCcccccccccccCccch
Q 004734 91 KNLNCCVCLKSMSPSQT---LGPMVASDSFIHRCSICGAAAHLSCS 133 (732)
Q Consensus 91 ~p~~C~vC~~~l~~~qg---~g~~~~~~~~~~~C~~C~~~vH~~C~ 133 (732)
...||.+|...--.... + .+|+.|..=+|..|.
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~M----------IqCd~C~~W~H~~Cv 36 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKM----------MQCGKCDRWVHSKCE 36 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCE----------EECTTTCCEEEGGGS
T ss_pred CcCcCCCCcCccCCcccCCCe----------EECCCCCcccchhcc
Done!