BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004735
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 228/666 (34%), Positives = 338/666 (50%), Gaps = 39/666 (5%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A +E
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
+ P + VR EY G G R G ++F+++ DQRLY D+ + P P+
Sbjct: 63 A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239
TP G L +AD + P R + E + + + A+ L+G + +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCXAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAG 294
SD F PR+ P G + W+ W HP PW+ EL ++E+G R + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRXPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ I ++ +W+ G L TDR G+WNLH+ + + + EF+ PLW
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
G + + + LIA + G + LGILD L P+T+ TL
Sbjct: 295 GXRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
G + ++ V LD +A + + + D + +Y+ P++ F T G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
STGYGR +RERL GRWG+VDV DC + AT L G AD RL + GGSAGG+T ++L
Sbjct: 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS 523
Query: 595 RDTFKAGASLYGVAD-LSMLRAETHKFESRYIDNLVGSEKD----YYEKSPINFVDKFSC 649
D + G LY V D L TH FESRY+D L+GS ++ Y +++P+ D+
Sbjct: 524 TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRV 583
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709
P +L QGLED V PP+Q + +A+ G+P A + +EGE HGFR+ E LE ++
Sbjct: 584 PFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETXVRALEAELSL 643
Query: 710 FARVVG 715
+A+V G
Sbjct: 644 YAQVFG 649
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 227/666 (34%), Positives = 341/666 (51%), Gaps = 39/666 (5%)
Query: 69 TAPYGSWKSPLTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEP 128
TAPYG+W+SP+ A +V+ S R G + W+ RP EAGR LV+ A +E
Sbjct: 4 TAPYGAWQSPIDAALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEES 62
Query: 129 SDITPKEYAVRTTAQEYGG----GAFR-IFGDTVIFSNYKDQRLYKHSIDSKDSS-PLPI 182
+ P + VR EY G G R G ++F+++ DQRLY D+ + P P+
Sbjct: 63 A--LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL 120
Query: 183 TP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIALNGQNIQEPKVL 239
TP G L +AD + P + E+ + + + A+ L+G + +
Sbjct: 121 TPVSAVGGGL-RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179
Query: 240 VSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAG 294
SD F PR+ P G + W+ W HP MPW+ EL ++E+G R + G
Sbjct: 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239
Query: 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354
+ I ++ +W+ G L TDR G+WNLH+ + + + EF+ PLW
Sbjct: 240 PEEAIAQA----EWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTP 294
Query: 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLF 414
G+ + + + LIA + G + LGILD L P+T+ TL
Sbjct: 295 GMRWFAPLAN----GLIAVVH-GKGAAVLGILDPESGELVDAAGPWTEW-AATLTVSGTR 348
Query: 415 VEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQK 474
G + ++ V LD +A + + + D + +Y+ P++ F T G++
Sbjct: 349 AVGVAASPRTAYEVVELDTVTGRA---RTIGARHTDPVD-PAYYPEPQIRTF-TAPDGRE 403
Query: 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGG 534
+A+ YPP +P + +E PP +V +HGGPTS +L+L + Y+TSRG DVNYGG
Sbjct: 404 IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGG 463
Query: 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF 594
STGYGR +RERL GRWG+VDV DC + AT L G AD RL + GG+AGG+T ++L
Sbjct: 464 STGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGAAGGWTAASSLVS 523
Query: 595 RDTFKAGASLYGVAD-LSMLRAETHKFESRYIDNLVGSEKD----YYEKSPINFVDKFSC 649
D + G LY V D L TH FESRY+D L+GS ++ Y +++P+ D+
Sbjct: 524 TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRV 583
Query: 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709
P +L QGLED V PP+Q + +A+ G+P A + +EGE HGFR+ E + LE ++
Sbjct: 584 PFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSFEGEGHGFRRKETMVRALEAELSL 643
Query: 710 FARVVG 715
+A+V G
Sbjct: 644 YAQVFG 649
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 12/217 (5%)
Query: 491 PEEKPPLLVKSHGGPTSE-------ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543
P ++ P+ V +GGP S+ RG +L QY +G+ ++ G+ GR+F
Sbjct: 513 PAKRYPVAVYVYGGPASQTVTDSWPGRGD-HLFNQYLAQQGYVVFSLDNRGTPRRGRDFG 571
Query: 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGA 602
L G+ G V+V D +L D R+ + G S GGY TL LA D++ G
Sbjct: 572 GALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGV 631
Query: 603 SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV 662
+ V D + ++H + RY+D ++ Y E + ++ P++L G+ D V
Sbjct: 632 AGAPVTDWGLY--DSH-YTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNV 688
Query: 663 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI 699
+ + AL++ G P L+ Y G +HG A+ +
Sbjct: 689 LFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADAL 725
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ +I+ L G ++ +SPIN VD+ P+ L D P ++
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGE 538
Query: 674 LKENG 678
L G
Sbjct: 539 LLARG 543
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 341 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 400
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 401 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 458
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ +I+ L G ++ +SPIN VD+ P+ L D P ++
Sbjct: 459 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGE 518
Query: 674 LKENG 678
L G
Sbjct: 519 LLARG 523
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G + GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYAYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ +I+ L G ++ +SPIN VD+ P+ L D P ++
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGE 538
Query: 674 LKENG 678
L G
Sbjct: 539 LLARG 543
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ +I+ L G ++ +SPIN VD+ P+ L + P ++
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLLRLMGE 538
Query: 674 LKENG 678
L G
Sbjct: 539 LLARG 543
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V HGGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQ 655
+ +I+ L G ++ +SPIN VD+ P+ L
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIH 520
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P +V GGP +E + + G+ V NY GSTGYG E+R +++G ++
Sbjct: 361 PTVVLVAGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
D + A + SG A E L I G S GGY TL AL + FKAG + V D +
Sbjct: 421 EDVSAAARWARESGLASE--LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMY 478
Query: 615 AETHKFESRYIDNLVGSEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673
+ +I+ L G ++ +SPIN VD+ P+ L D P ++
Sbjct: 479 ELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGE 538
Query: 674 LKENG 678
L G
Sbjct: 539 LLARG 543
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL++ + GP S+ + LS + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLIEVYAGPCSQKVDTVFRLSWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D G D+KR+ I G S GGY T L A FK G + VA
Sbjct: 560 LGTFEVEDQIEATRQFSKMGFVDDKRIAIWGWSYGGYVTSMVLGAGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL DYY S + + + F +L G D
Sbjct: 617 PVSKWEYYDSVYTERYMGLPTPEDNL-----DYYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ ++ KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQLSKALVDAGVDFQTMWYTDEDHG 703
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Query: 488 QASPEEKPPLLVKSHGGPTSEA-RGILNLS-IQYWTSR-GWAFVDVNYGGSTGYGREFRE 544
Q +K PLL++ +GGP S++ R + ++ I Y S+ G V+ G+ G +
Sbjct: 489 QFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLY 548
Query: 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-RDTFKAGAS 603
+ + G+ +V D + + G DEKR+ I G S GGY + ALA FK G +
Sbjct: 549 AVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 608
Query: 604 LYGVADLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPINFVDKF--SCPIILFQ 655
VA +S + R++ DNL ++Y+ S + ++ + +L
Sbjct: 609 ---VAPVSSWEYYASVYTERFMGLPTKDDNL-----EHYKNSTVMARAEYFRNVDYLLIH 660
Query: 656 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693
G D V + +I KAL + + Y + HG
Sbjct: 661 GTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL 698
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 88/212 (41%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR 549
+K PLL+ + GP S+ A LN + ++ + GS G + + R
Sbjct: 502 KKYPLLIDVYAGPCSQKADAAFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINKR 561
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G ++V D A + G D KR+ I G S GGY T L + FK G + VA
Sbjct: 562 LGTLEVEDQIEAARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 618
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 619 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 673
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 674 NVHFQQSAQISKALVDAGVDFQAMWYTDEDHG 705
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 538 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 597
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 598 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 654
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 655 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 709
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 710 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 741
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 508 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 567
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 568 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 624
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 625 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 679
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 680 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 711
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 508 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 567
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 568 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 624
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 625 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 679
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 680 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 711
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 502 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 561
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 562 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 618
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 619 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 673
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 674 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 705
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 510 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 569
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 570 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 626
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 627 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 681
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 682 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 713
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 511 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 570
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 571 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 627
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 628 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 682
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 683 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 714
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 501 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 560
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 561 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 617
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 618 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 672
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 673 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 704
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 503 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 562
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 563 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 619
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 620 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 674
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 675 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 706
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 506 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 565
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 566 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 622
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 623 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 677
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 678 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 709
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 503 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 562
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 563 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 619
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 620 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 674
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 675 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 706
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 512 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 571
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 572 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 628
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 629 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 683
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 684 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 715
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 505 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 564
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 565 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 621
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 622 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 676
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 677 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 708
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ + GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 508 KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 567
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 568 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 624
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 625 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 679
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 680 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 711
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 493 EKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGG-STGY-GREFRERLLGR 549
+K PLL+ GP S+ A + L+ + + + ++ G +GY G + + R
Sbjct: 500 KKYPLLLDVFAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRR 559
Query: 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL-AFRDTFKAGASLYGVA 608
G +V D A G D KR+ I G S GGY T L + FK G + VA
Sbjct: 560 LGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA---VA 616
Query: 609 DLSMLRAETHKFESRYI------DNLVGSEKDYYEKSPI-NFVDKF-SCPIILFQGLEDK 660
+S + RY+ DNL D+Y S + + + F +L G D
Sbjct: 617 PVSRWEYYDSVYTERYMGLPTPEDNL-----DHYRNSTVMSRAENFKQVEYLLIHGTADD 671
Query: 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
V Q+ +I KAL + G+ + Y E HG
Sbjct: 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHG 703
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 15/235 (6%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE--RLLGRWGIV 553
P L+ +GG SI W G + N G YG+ + + RL + +
Sbjct: 447 PTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVF 506
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 613
D D + A +LV KRL I GGS GG AA+ R GA + V L M+
Sbjct: 507 D--DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELY-GAVVCAVPLLDMV 563
Query: 614 RAETHKFESRYIDNLVGSE-----KDYYEKSPINFV--DKFSCPIILFQGLEDKVVPPDQ 666
R +I +E K + SP + V D +++ D V P
Sbjct: 564 RYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMH 623
Query: 667 ARKIYKALKEN-GLP-VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDV 719
ARK A++ + G P AL+ E G A+ + +E + ++ + DV
Sbjct: 624 ARKFVAAVQNSPGNPATALLRIEANA-GHGGADQVAKAIESSVDLYSFLFQVLDV 677
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 34/133 (25%)
Query: 565 LVGSGKADEKRLCITGGSAGGYTTLAA-LAFRDTFKAGASLYGVADLSMLRAETHKFESR 623
L+ DE R+ ITG S GGY T A + F + F A + G D+S + E K
Sbjct: 254 LLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVS--KVERIK---- 307
Query: 624 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683
PI +F +D VVP + +R + K L E G V
Sbjct: 308 ------------------------DIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRY 343
Query: 684 VEYEG---EQHGF 693
EYE E+HG+
Sbjct: 344 TEYEKGFMEKHGW 356
>pdb|1VLQ|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|G Chain G, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|H Chain H, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|I Chain I, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|J Chain J, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|K Chain K, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|L Chain L, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
Length = 337
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 570 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLR-----AETHKFESRY 624
+ D++R+ I GGS GG LA A KA A L V L R +TH +
Sbjct: 188 QVDQERIVIAGGSQGGGIALAVSALSK--KAKALLCDVPFLCHFRRAVQLVDTHPYAE-- 243
Query: 625 IDNLVGSEKDYYEK--------SPINFVDKFSCPIILFQGLEDKVVPPDQ---ARKIYKA 673
I N + + +D E +NF + P + GL D + PP A Y
Sbjct: 244 ITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLXDNICPPSTVFAAYNYYAG 303
Query: 674 LKENGLPVALVEYEGEQHG--FRKAENIKF 701
KE + + Y + G F+ E +KF
Sbjct: 304 PKE----IRIYPYNNHEGGGSFQAVEQVKF 329
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 572 DEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631
D RL ITG GG T A KA + YG LVG
Sbjct: 113 DAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYG--------------------KLVGE 152
Query: 632 EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691
+ K P++ + P++ G +D +P D +AL+ +V Y H
Sbjct: 153 KSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATAEIVVYPEADH 212
Query: 692 GFR-------KAENIKFTLEQQMVFFAR 712
F E+ K ++ + +FA+
Sbjct: 213 AFNADYRASYHEESAKDGWQRXLAWFAQ 240
>pdb|3M81|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
Length = 337
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 570 KADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLR-----AETHKFESRY 624
+ D++R+ I GGS GG LA A KA A L V L R +TH +
Sbjct: 188 QVDQERIVIAGGSQGGGIALAVSALSK--KAKALLCDVPFLCHFRRAVQLVDTHPYAE-- 243
Query: 625 IDNLVGSEKDYYEK--------SPINFVDKFSCPIILFQGLEDKVVPPDQ---ARKIYKA 673
I N + + +D E +NF + P + GL D + PP A Y
Sbjct: 244 ITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYYAG 303
Query: 674 LKENGLPVALVEYEGEQHG--FRKAENIKF 701
KE + + Y + G F+ E +KF
Sbjct: 304 PKE----IRIYPYNNHEGGGSFQAVEQVKF 329
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 7/142 (4%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE--RLLGRWGIV 553
P L+ +GG + W G AF N G YG + + R + +
Sbjct: 489 PTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQNVF 548
Query: 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSM 612
D D + +L+ +G L I GGS GG A R D F A + GV D M
Sbjct: 549 D--DFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMD--M 604
Query: 613 LRAETHKFESRYIDNLVGSEKD 634
LR + ++D+ EK+
Sbjct: 605 LRFDQFTAGRYWVDDYGYPEKE 626
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
+D + A +L G RL I GGS GG A + R D + GV D MLR
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLD--MLR 572
Query: 615 AET 617
T
Sbjct: 573 YHT 575
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADLSMLR 614
+D + A +L G RL I GGS GG A + R D + GV D MLR
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLD--MLR 572
Query: 615 AET 617
T
Sbjct: 573 YHT 575
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 99/259 (38%), Gaps = 45/259 (17%)
Query: 472 GQKAYAYY-YPPSNPIYQASPEEKPPLLVKSHG-GPTSEARGILNLSIQYWTSRGWAFVD 529
G K AY P +NP EK PL + HG SE R I+ + + G A +
Sbjct: 10 GIKLNAYLDMPKNNP-------EKCPLCIIIHGFTGHSEERHIVAVQ-ETLNEIGVATLR 61
Query: 530 VNYGGSTGYGREFRERLLGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587
+ G +F + L +W I+ V D F+ + + G S GG +
Sbjct: 62 ADMYGHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTD--------IYMAGHSQGGLS 113
Query: 588 TLAALAF-RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPI----- 641
+ A A RD KA L A + + ++ + E D ++ +
Sbjct: 114 VMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYV 173
Query: 642 ---------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692
+FVDK++ P+++ G +D+ VP + + K K LV G+ H
Sbjct: 174 RVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKN----CKLVTIPGDTHC 229
Query: 693 FRK-----AENIK-FTLEQ 705
+ E +K F LEQ
Sbjct: 230 YDHHLELVTEAVKEFMLEQ 248
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 113/321 (35%), Gaps = 63/321 (19%)
Query: 389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKV---TLDDHKLKAVDFKVVW 445
F ++ L D+P + T N C P + LD+ +++VD K+
Sbjct: 23 FQGAMGLFDMPLQKLREYTGTNPC----------PEDFDEYWNRALDE--MRSVDPKIEL 70
Query: 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGP 505
S + + + L + T V G + +A Y P E K P L++ HG
Sbjct: 71 KESSFQVSFAECYDL-----YFTGVRGARIHAKYIKPKT-------EGKHPALIRFHG-- 116
Query: 506 TSEARGILNLSIQYWTS---------RGWAFVDVNYGGSTGY---GREFR------ERLL 547
S G N + Y + RG + GG TG G R + +L
Sbjct: 117 YSSNSGDWNDKLNYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNML 176
Query: 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-- 605
R +D A ++ + DE R+ + G S GG +LA A + S Y
Sbjct: 177 FRHIFLDT---AQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPF 233
Query: 606 -----GVADLSMLRAETHKFES--RYIDNLVGSEKDYYEK----SPINFVDKFSCPIILF 654
V DL + + + R D E + + K N + +++
Sbjct: 234 LSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMC 293
Query: 655 QGLEDKVVPPDQARKIYKALK 675
GL D+V PP Y ++
Sbjct: 294 VGLMDQVCPPSTVFAAYNNIQ 314
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 644 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTL 703
+D+ CP ++F ED VVPP A I++ + +V H + +
Sbjct: 201 LDRIVCPALIFVSDEDHVVPPGNADIIFQGISST--EKEIVRLRNSYHVATLDYDQPMII 258
Query: 704 EQQMVFFARVVG 715
E+ + FFA+ G
Sbjct: 259 ERSLEFFAKHAG 270
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 589 LAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPIN--FVDK 646
LAALAF A A L G+ S ++AE K E Y V + K + + +
Sbjct: 162 LAALAFNP--DAPAELPGIG--SDIKAEGVK-ELAYPVTPVPAIKHLITIGAVAEMLLPR 216
Query: 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQ 706
CP ++ Q ED VVPP IY + L+ E H + + LE+
Sbjct: 217 VKCPALIIQSREDHVVPPHNGELIYNGIGST--EKELLWLENSYHVATLDNDKELILERS 274
Query: 707 MVFFAR 712
+ F +
Sbjct: 275 LAFIRK 280
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 1/122 (0%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRA 615
+D + A +L G RL I GGS GG A R +L V L LR
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXR-VALPAVGVLDXLRY 573
Query: 616 ET 617
T
Sbjct: 574 HT 575
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 1/122 (0%)
Query: 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555
P ++ +GG ++S+ W G + N G YG+ + +
Sbjct: 455 PTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRA 615
+D + A +L G RL I GGS GG A R +L V L LR
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXR-VALPAVGVLDXLRY 573
Query: 616 ET 617
T
Sbjct: 574 HT 575
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 589 LAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPIN--FVDK 646
LAALAF A A L G+ S ++AE K E Y V + K + + +
Sbjct: 160 LAALAFNP--DAPAELPGIG--SDIKAEGVK-ELAYPVTPVPAIKHLITIGAVAEMLLPR 214
Query: 647 FSCPIILFQGLEDKVVPPDQARKIYKAL 674
CP ++ Q ED VVPP IY +
Sbjct: 215 VKCPALIIQSREDHVVPPHNGELIYNGI 242
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 10/179 (5%)
Query: 494 KPPLLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552
K P L++++GG A + + W V N G +G E+ + G
Sbjct: 477 KNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQ 536
Query: 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM 612
ND + + L+ + L I GGS GG A+ R GA V L M
Sbjct: 537 TAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPEL-FGAVACEVPILDM 595
Query: 613 LRAET----HKFESRY----IDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVP 663
+R + H + + Y I N + K Y ++ K+ +I L+ +V P
Sbjct: 596 IRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHP 654
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADL 610
+D A +L+ G KRL I GGS GG A R D F + GV D+
Sbjct: 527 DDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDM 582
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 582 SAGGY-----TTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY- 635
S GG+ LAAL + L G A+ AE + +D G +
Sbjct: 389 SPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEM----TAALDRKSGDYNQFW 444
Query: 636 YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE 676
++++ + DK +++ GL+D V P+QA +KAL E
Sbjct: 445 HDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE 485
>pdb|1L7A|A Chain A, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
pdb|1L7A|B Chain B, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
Length = 318
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML--- 613
D + + DE R+ +TGGS GG T+AA A D KA VAD L
Sbjct: 156 DAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKA-----AVADYPYLSNF 210
Query: 614 -RAETHKFESRYI------------DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 660
RA E Y+ + V + K +N D+ P+++ GL DK
Sbjct: 211 ERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDK 270
Query: 661 VVPPDQARKIYKALK 675
V PP Y L+
Sbjct: 271 VTPPSTVFAAYNHLE 285
>pdb|1ODT|C Chain C, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
pdb|1ODT|H Chain H, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
Length = 318
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 557 DCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML--- 613
D + + DE R+ +TGG+ GG T+AA A D KA VAD L
Sbjct: 156 DAVRALEVISSFDEVDETRIGVTGGAQGGGLTIAAAALSDIPKA-----AVADYPYLSNF 210
Query: 614 -RAETHKFESRYI------------DNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK 660
RA E Y+ + V + K +N D+ P+++ GL DK
Sbjct: 211 ERAIDVALEEPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDK 270
Query: 661 VVPPDQARKIYKALK 675
V PP Y L+
Sbjct: 271 VTPPSTVFAAYNHLE 285
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 627 NLVGSEKDYYEK----SPINFVDKFSC---PIILFQGLEDKVVPPDQARKIYKALKENGL 679
++GS K +Y+ S +F + P+++ G +D++VP + + + L NG
Sbjct: 188 GMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPNG- 246
Query: 680 PVALVEYEGEQHGF 693
AL Y+G HG
Sbjct: 247 --ALKTYKGYPHGM 258
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFR-DTFKAGASLYGVADL 610
+D A +L+ G KRL I GGS GG R D F + GV D+
Sbjct: 528 DDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDM 583
>pdb|1X9N|A Chain A, Crystal Structure Of Human Dna Ligase I Bound To
5'-Adenylated, Nicked Dna
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 189 PLVSYADGIFDP------RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242
P+ A G+ D RF R++ VRED++ + ++ ++ + IQ + SG
Sbjct: 622 PIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSG 681
Query: 243 SD 244
SD
Sbjct: 682 SD 683
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2)
From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 626 DNLVG-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684
+ L+G + K+ +P N + F ++ + ED V D ++ + E G P V
Sbjct: 49 ERLIGDAAKNQVAXNPTNTI--FDAKRLIGRKFEDATVQSDXKHWPFRVVSEGGKPKVQV 106
Query: 685 EYEGEQHGF 693
EY+GE F
Sbjct: 107 EYKGETKTF 115
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2
(Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 626 DNLVG-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684
+ L+G + K+ +P N + F ++ + ED V D ++ + E G P V
Sbjct: 67 ERLIGDAAKNQVAMNPTNTI--FDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQV 124
Query: 685 EYEGEQHGF 693
EY+GE F
Sbjct: 125 EYKGETKTF 133
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 626 DNLVG-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684
+ L+G + K+ +P N V F ++ + D VV D ++ + E G P LV
Sbjct: 72 ERLIGDAAKNQVAMNPQNTV--FDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLV 129
Query: 685 EYEGEQHGF 693
Y+GE F
Sbjct: 130 SYKGENKAF 138
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 626 DNLVG-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684
+ L+G + K+ +P N V F ++ + +D VV D + + + G P V
Sbjct: 45 ERLIGDAAKNQVAMNPTNTV--FDAKRLIGRAFDDAVVQSDMKHWPFMVVNDAGAPKVQV 102
Query: 685 EYEGEQHGF 693
EY+GE F
Sbjct: 103 EYKGETKSF 111
>pdb|3U1W|A Chain A, Crystal Structure Of A Hypothetical Periplasmic Protein
(Bdi_1975) From Parabacteroides Distasonis Atcc 8503 At
2.00 A Resolution
pdb|3U1W|B Chain B, Crystal Structure Of A Hypothetical Periplasmic Protein
(Bdi_1975) From Parabacteroides Distasonis Atcc 8503 At
2.00 A Resolution
pdb|3U1W|C Chain C, Crystal Structure Of A Hypothetical Periplasmic Protein
(Bdi_1975) From Parabacteroides Distasonis Atcc 8503 At
2.00 A Resolution
Length = 253
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 605 YGVADLSMLRAETHKFESRYIDNLVGS----EKDYYEKSPINFVDKFSCPIILFQGLEDK 660
+ A+L ++ + +E IDN + KDY +S + P I+ QG E
Sbjct: 151 FANAELLDIQQNSLGYELDXIDNQIYKVAQLNKDYRWQSTTWAXSEQEVPQIVXQGFESS 210
Query: 661 VVPPDQARKIYKALKENG 678
D+ + IY L NG
Sbjct: 211 AYASDKVQSIYTLLNANG 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,133,910
Number of Sequences: 62578
Number of extensions: 1124206
Number of successful extensions: 2782
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2672
Number of HSP's gapped (non-prelim): 107
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)