Query 004735
Match_columns 732
No_of_seqs 656 out of 4269
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 12:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 3.2E-46 6.9E-51 419.3 57.4 576 80-716 5-619 (620)
2 PRK10115 protease 2; Provision 100.0 2.6E-44 5.6E-49 405.4 61.0 572 92-716 75-678 (686)
3 KOG2281 Dipeptidyl aminopeptid 100.0 2.2E-39 4.9E-44 332.2 31.7 495 193-712 202-866 (867)
4 KOG2100 Dipeptidyl aminopeptid 100.0 2.2E-32 4.7E-37 308.8 49.4 448 249-715 212-749 (755)
5 COG1770 PtrB Protease II [Amin 100.0 8.9E-32 1.9E-36 281.5 48.8 560 99-715 85-680 (682)
6 PF00326 Peptidase_S9: Prolyl 100.0 5.7E-31 1.2E-35 258.5 16.5 205 512-716 2-212 (213)
7 COG1505 Serine proteases of th 100.0 1.8E-25 3.9E-30 231.2 36.4 316 382-715 320-648 (648)
8 KOG2237 Predicted serine prote 99.9 1.2E-24 2.6E-29 226.1 37.3 487 194-715 185-707 (712)
9 PRK01029 tolB translocation pr 99.9 2.2E-23 4.8E-28 224.3 28.7 249 154-440 146-411 (428)
10 PRK03629 tolB translocation pr 99.9 3.1E-22 6.8E-27 216.5 29.3 245 155-440 164-414 (429)
11 PRK05137 tolB translocation pr 99.9 4.2E-22 9.1E-27 216.9 29.1 245 154-440 165-420 (435)
12 PRK04043 tolB translocation pr 99.9 7E-22 1.5E-26 211.1 28.6 231 165-439 169-407 (419)
13 PRK04792 tolB translocation pr 99.9 1.1E-21 2.3E-26 213.2 29.4 243 156-439 184-432 (448)
14 PRK01029 tolB translocation pr 99.9 1.3E-21 2.8E-26 210.8 28.5 263 92-402 140-416 (428)
15 PRK00178 tolB translocation pr 99.9 3.4E-21 7.4E-26 210.3 29.0 244 155-439 163-413 (430)
16 PRK13604 luxD acyl transferase 99.9 9.1E-22 2E-26 195.7 22.1 214 464-695 12-247 (307)
17 PRK02889 tolB translocation pr 99.9 5.6E-21 1.2E-25 207.1 29.3 244 155-439 164-410 (427)
18 PRK04922 tolB translocation pr 99.9 4.3E-21 9.4E-26 208.7 28.2 245 155-440 168-419 (433)
19 PRK04043 tolB translocation pr 99.9 2.1E-20 4.5E-25 199.8 28.5 252 95-401 152-412 (419)
20 PRK03629 tolB translocation pr 99.9 3.5E-20 7.6E-25 200.5 29.9 253 99-401 163-418 (429)
21 PRK04792 tolB translocation pr 99.9 8.1E-20 1.8E-24 198.5 30.4 253 99-401 182-437 (448)
22 PRK05137 tolB translocation pr 99.9 5.3E-20 1.1E-24 200.5 29.0 250 99-398 165-421 (435)
23 PF00930 DPPIV_N: Dipeptidyl p 99.9 7.2E-21 1.6E-25 201.0 20.5 245 165-440 23-324 (353)
24 PRK10566 esterase; Provisional 99.9 2.2E-20 4.7E-25 188.5 21.3 226 475-714 12-249 (249)
25 PRK04922 tolB translocation pr 99.9 2E-19 4.3E-24 195.7 29.5 253 99-401 167-423 (433)
26 PRK00178 tolB translocation pr 99.9 2.5E-19 5.4E-24 195.6 30.3 253 99-401 162-418 (430)
27 PRK02889 tolB translocation pr 99.9 2.6E-19 5.6E-24 194.1 29.9 250 100-402 164-416 (427)
28 PLN02298 hydrolase, alpha/beta 99.9 5.8E-20 1.3E-24 193.4 22.7 243 460-715 31-319 (330)
29 TIGR02821 fghA_ester_D S-formy 99.9 1E-19 2.2E-24 185.4 23.4 242 460-714 12-275 (275)
30 PLN02442 S-formylglutathione h 99.8 5.1E-20 1.1E-24 187.8 20.6 241 460-715 17-282 (283)
31 PRK05077 frsA fermentation/res 99.8 2.4E-19 5.2E-24 191.8 25.1 231 460-714 167-413 (414)
32 PF01738 DLH: Dienelactone hyd 99.8 4.6E-20 9.9E-25 181.7 14.8 204 475-714 1-218 (218)
33 PRK01742 tolB translocation pr 99.8 1.6E-18 3.6E-23 188.1 27.5 238 154-440 168-412 (429)
34 TIGR02800 propeller_TolB tol-p 99.8 3.9E-18 8.5E-23 186.0 27.6 243 154-438 155-403 (417)
35 KOG1455 Lysophospholipase [Lip 99.8 7.5E-19 1.6E-23 169.1 18.2 235 464-713 30-312 (313)
36 PRK10749 lysophospholipase L2; 99.8 9.6E-19 2.1E-23 183.6 20.8 242 458-713 27-329 (330)
37 COG0412 Dienelactone hydrolase 99.8 2.1E-18 4.5E-23 169.4 21.8 214 462-715 3-235 (236)
38 PF05448 AXE1: Acetyl xylan es 99.8 5.8E-19 1.3E-23 180.7 18.0 237 460-713 55-320 (320)
39 PHA02857 monoglyceride lipase; 99.8 9.6E-19 2.1E-23 179.4 19.7 226 471-714 9-274 (276)
40 PRK10162 acetyl esterase; Prov 99.8 3.8E-18 8.3E-23 177.1 23.9 230 461-715 57-317 (318)
41 PLN02385 hydrolase; alpha/beta 99.8 1.2E-18 2.6E-23 184.5 20.1 239 463-715 63-347 (349)
42 COG1647 Esterase/lipase [Gener 99.8 5.8E-19 1.3E-23 161.1 14.6 202 496-711 16-242 (243)
43 PLN02652 hydrolase; alpha/beta 99.8 6.7E-18 1.5E-22 179.1 22.0 238 462-716 111-390 (395)
44 COG0823 TolB Periplasmic compo 99.8 6.9E-17 1.5E-21 171.1 27.7 230 165-435 173-405 (425)
45 PRK01742 tolB translocation pr 99.8 8.3E-17 1.8E-21 174.8 28.1 246 99-401 168-416 (429)
46 TIGR02800 propeller_TolB tol-p 99.8 1.2E-16 2.6E-21 174.3 29.1 252 99-401 155-409 (417)
47 KOG1552 Predicted alpha/beta h 99.8 1E-17 2.2E-22 158.3 16.1 219 460-715 34-254 (258)
48 PRK11460 putative hydrolase; P 99.8 8.1E-17 1.7E-21 159.2 20.7 185 492-714 13-209 (232)
49 PRK05371 x-prolyl-dipeptidyl a 99.7 4E-16 8.6E-21 177.8 27.5 207 515-728 270-535 (767)
50 COG2267 PldB Lysophospholipase 99.7 1.4E-16 3.1E-21 162.4 20.8 235 462-715 10-296 (298)
51 KOG4391 Predicted alpha/beta h 99.7 5.4E-17 1.2E-21 146.6 15.0 231 459-715 52-284 (300)
52 COG0823 TolB Periplasmic compo 99.7 4.9E-16 1.1E-20 164.6 24.3 207 149-397 199-410 (425)
53 COG3458 Acetyl esterase (deace 99.7 2.6E-17 5.6E-22 154.5 12.6 234 462-712 57-316 (321)
54 PRK10985 putative hydrolase; P 99.7 3.8E-16 8.2E-21 163.3 22.0 236 463-715 33-322 (324)
55 TIGR01840 esterase_phb esteras 99.7 1.5E-16 3.2E-21 155.7 16.5 191 477-677 1-197 (212)
56 PLN02511 hydrolase 99.7 9.7E-16 2.1E-20 163.6 22.3 240 462-715 72-367 (388)
57 COG0657 Aes Esterase/lipase [L 99.7 1.1E-15 2.3E-20 159.3 21.6 223 471-712 60-309 (312)
58 TIGR00976 /NonD putative hydro 99.7 1.7E-15 3.7E-20 169.5 22.8 245 467-729 2-320 (550)
59 COG0429 Predicted hydrolase of 99.7 1.7E-15 3.7E-20 148.1 19.7 233 465-715 53-342 (345)
60 TIGR03611 RutD pyrimidine util 99.7 2E-15 4.3E-20 152.8 18.1 201 494-711 12-256 (257)
61 TIGR03343 biphenyl_bphD 2-hydr 99.7 2.5E-15 5.5E-20 154.7 18.7 202 496-711 31-281 (282)
62 TIGR03100 hydr1_PEP hydrolase, 99.7 9.4E-15 2E-19 148.8 22.6 231 462-711 3-273 (274)
63 PF07859 Abhydrolase_3: alpha/ 99.6 1.3E-15 2.8E-20 149.4 13.6 183 498-694 1-210 (211)
64 TIGR01607 PST-A Plasmodium sub 99.6 5.1E-15 1.1E-19 154.8 18.9 233 466-711 2-331 (332)
65 PF12695 Abhydrolase_5: Alpha/ 99.6 2.4E-15 5.2E-20 137.8 14.5 145 497-692 1-145 (145)
66 PF00930 DPPIV_N: Dipeptidyl p 99.6 1.4E-14 3E-19 153.1 22.0 250 148-424 48-353 (353)
67 PF06500 DUF1100: Alpha/beta h 99.6 8.8E-15 1.9E-19 150.3 19.1 229 460-714 164-410 (411)
68 PRK00870 haloalkane dehalogena 99.6 1.2E-14 2.6E-19 151.1 20.5 232 460-713 20-301 (302)
69 PLN02824 hydrolase, alpha/beta 99.6 1.7E-14 3.7E-19 149.4 20.5 207 496-713 30-294 (294)
70 KOG1515 Arylacetamide deacetyl 99.6 1.7E-14 3.8E-19 146.6 20.0 226 471-713 70-335 (336)
71 PF02230 Abhydrolase_2: Phosph 99.6 1E-14 2.2E-19 143.0 16.1 189 492-714 11-216 (216)
72 TIGR02427 protocat_pcaD 3-oxoa 99.6 1.3E-14 2.9E-19 145.9 15.8 199 494-710 12-250 (251)
73 PF02129 Peptidase_S15: X-Pro 99.6 3.3E-15 7.1E-20 152.1 11.3 209 471-692 1-271 (272)
74 KOG1838 Alpha/beta hydrolase [ 99.6 7.5E-14 1.6E-18 142.2 20.8 243 461-715 93-390 (409)
75 PLN02965 Probable pheophorbida 99.6 4.9E-14 1.1E-18 142.6 19.6 202 497-713 5-253 (255)
76 TIGR02240 PHA_depoly_arom poly 99.6 2.8E-14 6E-19 146.3 18.0 217 471-715 10-268 (276)
77 KOG4178 Soluble epoxide hydrol 99.6 1.6E-13 3.4E-18 135.1 21.4 208 493-714 42-321 (322)
78 PLN02872 triacylglycerol lipas 99.6 2E-14 4.3E-19 151.9 16.2 247 459-715 42-391 (395)
79 PLN03087 BODYGUARD 1 domain co 99.6 8E-14 1.7E-18 149.8 21.1 225 465-712 179-478 (481)
80 PRK11071 esterase YqiA; Provis 99.6 3.8E-14 8.3E-19 135.2 16.3 179 496-711 2-189 (190)
81 TIGR03056 bchO_mg_che_rel puta 99.6 7.7E-14 1.7E-18 143.2 19.6 200 495-711 28-278 (278)
82 PRK03592 haloalkane dehalogena 99.6 1.2E-13 2.6E-18 143.0 21.1 203 496-715 28-291 (295)
83 PRK10673 acyl-CoA esterase; Pr 99.6 9.8E-14 2.1E-18 140.5 20.0 201 492-712 13-254 (255)
84 PLN00021 chlorophyllase 99.6 7E-14 1.5E-18 143.3 18.9 205 472-716 36-286 (313)
85 PF10503 Esterase_phd: Esteras 99.6 3E-14 6.6E-19 136.6 15.0 191 476-677 2-198 (220)
86 PLN02679 hydrolase, alpha/beta 99.6 1.7E-13 3.7E-18 145.4 21.9 205 495-712 88-356 (360)
87 TIGR01250 pro_imino_pep_2 prol 99.6 1.1E-13 2.5E-18 142.4 20.0 203 495-711 25-288 (288)
88 PF12697 Abhydrolase_6: Alpha/ 99.6 3.1E-14 6.7E-19 140.7 15.0 181 498-693 1-217 (228)
89 COG4099 Predicted peptidase [G 99.6 1.9E-14 4.2E-19 136.6 11.9 182 464-687 163-354 (387)
90 PLN02894 hydrolase, alpha/beta 99.6 1.9E-13 4.1E-18 146.6 21.0 209 494-717 104-389 (402)
91 COG0400 Predicted esterase [Ge 99.6 1.4E-13 3E-18 130.5 17.4 186 492-714 15-206 (207)
92 TIGR01738 bioH putative pimelo 99.6 5.5E-14 1.2E-18 140.9 15.5 193 495-710 4-245 (245)
93 PRK07581 hypothetical protein; 99.6 1.3E-13 2.7E-18 145.8 18.9 213 494-715 40-338 (339)
94 PRK10349 carboxylesterase BioH 99.6 1E-13 2.2E-18 140.5 17.4 195 494-711 12-254 (256)
95 TIGR01249 pro_imino_pep_1 prol 99.6 1.4E-13 3.1E-18 143.0 18.8 220 465-714 8-306 (306)
96 TIGR03695 menH_SHCHC 2-succiny 99.6 1.1E-13 2.4E-18 138.9 17.1 198 496-710 2-250 (251)
97 TIGR01392 homoserO_Ac_trn homo 99.5 2.2E-13 4.8E-18 144.4 19.3 231 471-711 14-351 (351)
98 PRK06489 hypothetical protein; 99.5 3.1E-13 6.8E-18 143.7 19.6 211 495-714 69-358 (360)
99 COG2945 Predicted hydrolase of 99.5 2.2E-13 4.8E-18 122.1 15.0 197 462-711 5-205 (210)
100 COG4946 Uncharacterized protei 99.5 5.1E-13 1.1E-17 133.8 18.1 241 154-440 50-303 (668)
101 PRK00175 metX homoserine O-ace 99.5 4.3E-13 9.3E-18 143.3 18.9 217 495-714 48-375 (379)
102 PRK03204 haloalkane dehalogena 99.5 1.1E-12 2.4E-17 134.8 20.7 199 495-710 34-285 (286)
103 COG3509 LpqC Poly(3-hydroxybut 99.5 5E-13 1.1E-17 128.5 15.8 233 463-715 37-309 (312)
104 PF12715 Abhydrolase_7: Abhydr 99.5 5.3E-14 1.2E-18 141.7 9.2 213 460-688 87-343 (390)
105 TIGR01836 PHA_synth_III_C poly 99.5 7.7E-13 1.7E-17 140.1 18.2 205 497-712 64-349 (350)
106 PLN02578 hydrolase 99.5 5.4E-13 1.2E-17 141.4 17.0 196 496-711 87-353 (354)
107 PRK14875 acetoin dehydrogenase 99.5 8.3E-13 1.8E-17 141.8 18.7 198 494-712 130-370 (371)
108 TIGR03101 hydr2_PEP hydrolase, 99.5 4E-12 8.6E-17 126.7 21.9 215 463-695 2-247 (266)
109 KOG3043 Predicted hydrolase re 99.5 4.5E-13 9.8E-18 123.1 13.6 170 513-715 56-242 (242)
110 PRK11126 2-succinyl-6-hydroxy- 99.5 1.6E-12 3.5E-17 130.5 18.1 191 496-712 3-241 (242)
111 PLN02211 methyl indole-3-aceta 99.5 6.1E-12 1.3E-16 128.0 21.5 201 493-709 16-266 (273)
112 KOG1454 Predicted hydrolase/ac 99.5 3E-12 6.6E-17 132.0 18.9 206 493-713 56-324 (326)
113 KOG4409 Predicted hydrolase/ac 99.4 1.8E-12 3.8E-17 127.9 15.0 207 493-712 88-363 (365)
114 PRK08775 homoserine O-acetyltr 99.4 4E-12 8.8E-17 134.3 18.2 179 519-713 94-339 (343)
115 PF02897 Peptidase_S9_N: Proly 99.4 3.6E-11 7.8E-16 130.8 26.0 316 93-441 73-413 (414)
116 PLN03084 alpha/beta hydrolase 99.4 1.7E-11 3.7E-16 129.5 21.8 202 495-711 127-382 (383)
117 KOG4627 Kynurenine formamidase 99.4 1.3E-12 2.8E-17 117.7 10.9 201 458-692 42-247 (270)
118 PF14583 Pectate_lyase22: Olig 99.4 5.3E-11 1.1E-15 120.9 23.0 300 91-432 38-383 (386)
119 KOG4667 Predicted esterase [Li 99.4 6.7E-12 1.5E-16 114.1 14.4 214 460-696 9-243 (269)
120 PF08840 BAAT_C: BAAT / Acyl-C 99.4 2.3E-12 5E-17 125.1 12.3 160 555-715 3-212 (213)
121 PRK10439 enterobactin/ferric e 99.4 3.8E-11 8.3E-16 127.7 20.4 219 460-710 179-406 (411)
122 PF14583 Pectate_lyase22: Olig 99.4 2.1E-11 4.5E-16 123.8 17.3 235 170-440 15-280 (386)
123 PRK06765 homoserine O-acetyltr 99.3 3.6E-11 7.8E-16 127.3 18.4 217 493-712 54-387 (389)
124 PF12740 Chlorophyllase2: Chlo 99.3 5E-11 1.1E-15 115.6 16.5 201 477-717 6-254 (259)
125 PLN02980 2-oxoglutarate decarb 99.3 8.8E-11 1.9E-15 145.7 21.6 215 494-715 1370-1641(1655)
126 PF00756 Esterase: Putative es 99.3 5.8E-12 1.3E-16 127.1 7.0 219 471-710 4-251 (251)
127 COG2936 Predicted acyl esteras 99.3 1.2E-10 2.6E-15 124.2 16.9 235 462-715 20-319 (563)
128 PF03583 LIP: Secretory lipase 99.3 1.4E-10 3E-15 118.0 16.6 195 516-720 18-288 (290)
129 PRK05855 short chain dehydroge 99.3 9.9E-11 2.1E-15 133.8 17.4 218 471-714 11-293 (582)
130 COG3386 Gluconolactonase [Carb 99.3 1.5E-09 3.4E-14 110.0 23.9 244 89-379 25-278 (307)
131 COG4946 Uncharacterized protei 99.3 4.1E-10 9E-15 113.3 19.2 200 201-440 49-264 (668)
132 PF08538 DUF1749: Protein of u 99.2 4.4E-11 9.5E-16 118.2 11.0 210 494-711 32-303 (303)
133 PF08450 SGL: SMP-30/Gluconola 99.2 1.7E-09 3.6E-14 108.7 20.6 216 91-341 2-221 (246)
134 TIGR01838 PHA_synth_I poly(R)- 99.2 1.2E-09 2.5E-14 119.0 20.5 209 460-692 163-455 (532)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 2.7E-08 5.9E-13 103.0 29.7 242 150-436 38-283 (300)
136 PF05728 UPF0227: Uncharacteri 99.2 1.8E-09 3.8E-14 101.4 18.1 179 498-710 2-186 (187)
137 KOG2984 Predicted hydrolase [G 99.2 8.9E-11 1.9E-15 105.6 8.7 206 493-712 40-275 (277)
138 PF00561 Abhydrolase_1: alpha/ 99.2 1.4E-10 3.1E-15 115.0 11.1 159 525-693 1-216 (230)
139 KOG3101 Esterase D [General fu 99.2 1.8E-10 3.9E-15 104.4 9.6 212 474-694 27-263 (283)
140 COG2706 3-carboxymuconate cycl 99.1 1.1E-07 2.3E-12 94.1 29.6 283 79-398 30-332 (346)
141 PRK07868 acyl-CoA synthetase; 99.1 1.4E-09 3.1E-14 130.4 20.3 217 494-723 66-371 (994)
142 COG4188 Predicted dienelactone 99.1 2.3E-10 4.9E-15 115.0 10.9 226 461-692 38-294 (365)
143 PF03403 PAF-AH_p_II: Platelet 99.1 5.1E-10 1.1E-14 117.8 14.1 190 493-715 98-360 (379)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 3.4E-08 7.3E-13 102.3 26.4 230 156-436 2-241 (300)
145 COG4757 Predicted alpha/beta h 99.1 5.8E-10 1.3E-14 103.0 10.5 231 464-710 8-280 (281)
146 PRK13616 lipoprotein LpqB; Pro 99.1 1.5E-08 3.3E-13 112.4 22.6 171 192-398 351-536 (591)
147 COG2706 3-carboxymuconate cycl 99.1 1.6E-06 3.4E-11 86.0 33.9 246 164-438 15-282 (346)
148 PF10282 Lactonase: Lactonase, 99.0 1.2E-07 2.6E-12 100.1 27.5 276 87-397 35-332 (345)
149 PRK11028 6-phosphogluconolacto 99.0 1.5E-07 3.3E-12 99.1 27.3 258 151-437 43-311 (330)
150 COG3571 Predicted hydrolase of 99.0 1.8E-08 3.8E-13 87.5 16.1 169 492-693 11-182 (213)
151 PF06821 Ser_hydrolase: Serine 99.0 5.7E-09 1.2E-13 97.0 13.8 151 498-692 1-153 (171)
152 KOG2564 Predicted acetyltransf 99.0 7.1E-09 1.5E-13 98.6 13.7 131 456-605 45-179 (343)
153 COG0627 Predicted esterase [Ge 99.0 3.6E-09 7.9E-14 107.3 12.1 221 492-716 51-314 (316)
154 PF02273 Acyl_transf_2: Acyl t 99.0 2.7E-08 5.8E-13 93.1 16.3 210 466-695 7-240 (294)
155 KOG2624 Triglyceride lipase-ch 98.9 1.9E-08 4.2E-13 104.8 16.0 243 459-714 46-399 (403)
156 KOG2112 Lysophospholipase [Lip 98.9 2.4E-08 5.2E-13 92.1 14.0 115 569-712 88-203 (206)
157 cd00312 Esterase_lipase Estera 98.9 2.3E-09 4.9E-14 119.5 8.9 130 472-609 76-214 (493)
158 PF10282 Lactonase: Lactonase, 98.9 6.5E-07 1.4E-11 94.5 26.8 262 154-440 48-332 (345)
159 KOG3847 Phospholipase A2 (plat 98.9 1.1E-08 2.3E-13 98.8 11.1 192 492-716 115-374 (399)
160 PF07224 Chlorophyllase: Chlor 98.9 1.3E-08 2.7E-13 96.4 11.2 178 475-692 33-230 (307)
161 COG2819 Predicted hydrolase of 98.9 2.2E-07 4.7E-12 89.9 19.4 205 461-692 9-244 (264)
162 COG2382 Fes Enterochelin ester 98.9 5.5E-08 1.2E-12 95.1 15.2 222 460-715 68-297 (299)
163 KOG2382 Predicted alpha/beta h 98.9 5.2E-08 1.1E-12 96.6 14.7 208 492-713 49-313 (315)
164 PF06342 DUF1057: Alpha/beta h 98.8 4.3E-07 9.3E-12 87.9 20.2 104 492-607 32-136 (297)
165 TIGR02658 TTQ_MADH_Hv methylam 98.8 3E-06 6.4E-11 87.4 27.8 251 150-436 53-334 (352)
166 PRK13616 lipoprotein LpqB; Pro 98.8 1E-07 2.2E-12 105.9 18.4 163 149-339 356-533 (591)
167 PRK11028 6-phosphogluconolacto 98.8 1.7E-06 3.6E-11 91.2 26.4 245 157-435 4-263 (330)
168 TIGR01839 PHA_synth_II poly(R) 98.8 2.2E-07 4.7E-12 100.2 18.9 207 460-692 190-481 (560)
169 PF02897 Peptidase_S9_N: Proly 98.8 6.9E-07 1.5E-11 97.3 23.4 215 193-432 126-357 (414)
170 cd00707 Pancreat_lipase_like P 98.8 2.7E-08 6E-13 100.8 10.7 113 493-609 34-148 (275)
171 COG3208 GrsT Predicted thioest 98.8 1.1E-07 2.3E-12 90.3 12.9 197 492-714 5-233 (244)
172 COG2021 MET2 Homoserine acetyl 98.7 6.8E-07 1.5E-11 90.1 18.3 212 493-711 49-366 (368)
173 cd00200 WD40 WD40 domain, foun 98.7 9E-06 2E-10 82.5 27.0 264 89-417 10-279 (289)
174 COG2272 PnbA Carboxylesterase 98.7 4E-08 8.7E-13 102.3 8.9 129 472-609 77-218 (491)
175 PF09752 DUF2048: Uncharacteri 98.7 8.8E-07 1.9E-11 89.3 17.8 203 475-692 77-328 (348)
176 KOG2551 Phospholipase/carboxyh 98.7 6.3E-07 1.4E-11 83.3 14.8 122 558-715 92-222 (230)
177 KOG0318 WD40 repeat stress pro 98.6 1.3E-05 2.7E-10 82.8 24.3 233 163-439 79-357 (603)
178 KOG0315 G-protein beta subunit 98.6 6.5E-06 1.4E-10 77.1 20.3 205 89-339 84-294 (311)
179 PRK10115 protease 2; Provision 98.6 4E-06 8.7E-11 95.9 23.0 220 191-440 127-354 (686)
180 cd00200 WD40 WD40 domain, foun 98.6 1.5E-05 3.2E-10 80.9 25.1 234 149-435 14-252 (289)
181 PF10340 DUF2424: Protein of u 98.6 1.3E-06 2.9E-11 89.6 16.7 197 477-692 108-349 (374)
182 PF00135 COesterase: Carboxyle 98.6 3.5E-08 7.5E-13 111.6 5.9 127 473-607 107-244 (535)
183 COG0596 MhpC Predicted hydrola 98.6 1.1E-06 2.5E-11 88.3 16.1 99 495-607 21-122 (282)
184 PF03959 FSH1: Serine hydrolas 98.6 4.2E-07 9.2E-12 88.5 11.8 168 494-695 3-204 (212)
185 PF08662 eIF2A: Eukaryotic tra 98.6 1.8E-06 4E-11 82.5 15.3 121 166-317 40-161 (194)
186 KOG0279 G protein beta subunit 98.6 5.1E-05 1.1E-09 72.5 24.4 229 156-435 29-265 (315)
187 TIGR03230 lipo_lipase lipoprot 98.6 4.2E-07 9.1E-12 96.3 11.7 111 494-608 40-154 (442)
188 PF08662 eIF2A: Eukaryotic tra 98.5 5.1E-06 1.1E-10 79.5 17.4 151 194-376 9-163 (194)
189 PRK04940 hypothetical protein; 98.5 2.8E-06 6E-11 78.1 14.4 114 574-711 60-178 (180)
190 TIGR01849 PHB_depoly_PhaZ poly 98.5 2E-06 4.3E-11 90.2 15.0 70 644-713 333-406 (406)
191 KOG2055 WD40 repeat protein [G 98.5 1.7E-05 3.7E-10 80.7 20.1 210 90-341 215-429 (514)
192 TIGR03502 lipase_Pla1_cef extr 98.5 4.6E-06 1E-10 94.1 18.0 98 494-593 448-574 (792)
193 KOG2055 WD40 repeat protein [G 98.4 4.7E-06 1E-10 84.6 14.8 243 146-433 215-468 (514)
194 PF10142 PhoPQ_related: PhoPQ- 98.4 1.7E-05 3.6E-10 82.1 19.3 148 566-720 164-327 (367)
195 KOG0272 U4/U6 small nuclear ri 98.4 2.1E-05 4.6E-10 79.1 19.0 225 147-418 222-449 (459)
196 PF11144 DUF2920: Protein of u 98.4 2.1E-05 4.6E-10 81.0 19.6 159 555-715 163-369 (403)
197 PF11339 DUF3141: Protein of u 98.4 1.8E-05 3.8E-10 82.9 18.5 49 644-692 293-348 (581)
198 PF05677 DUF818: Chlamydia CHL 98.4 2E-05 4.3E-10 78.6 17.5 181 456-658 107-300 (365)
199 PTZ00421 coronin; Provisional 98.4 0.00026 5.5E-09 77.7 27.9 206 191-436 76-294 (493)
200 TIGR02171 Fb_sc_TIGR02171 Fibr 98.4 1.2E-05 2.6E-10 90.0 17.6 263 155-441 319-596 (912)
201 PF08450 SGL: SMP-30/Gluconola 98.4 0.00011 2.3E-09 73.8 23.2 196 195-435 4-215 (246)
202 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00018 3.9E-09 74.4 24.7 128 201-339 11-142 (352)
203 KOG0293 WD40 repeat-containing 98.4 1E-05 2.2E-10 81.0 14.7 197 191-436 270-474 (519)
204 KOG1553 Predicted alpha/beta h 98.4 1.3E-06 2.8E-11 85.6 8.2 181 461-662 214-397 (517)
205 PF06057 VirJ: Bacterial virul 98.3 6.3E-06 1.4E-10 75.8 11.2 180 497-711 4-190 (192)
206 KOG0266 WD40 repeat-containing 98.3 0.00014 3E-09 79.8 23.8 201 190-435 203-412 (456)
207 COG3386 Gluconolactonase [Carb 98.3 0.00021 4.5E-09 72.9 23.0 225 153-420 35-277 (307)
208 KOG0271 Notchless-like WD40 re 98.3 1.9E-05 4.2E-10 78.3 14.5 130 157-317 338-468 (480)
209 PF07433 DUF1513: Protein of u 98.3 0.00034 7.4E-09 69.8 23.3 216 192-436 6-251 (305)
210 PTZ00420 coronin; Provisional 98.3 0.00015 3.2E-09 80.2 23.0 206 147-397 77-301 (568)
211 PF10647 Gmad1: Lipoprotein Lp 98.3 0.00019 4.1E-09 71.8 21.8 188 177-400 10-208 (253)
212 PF10230 DUF2305: Uncharacteri 98.3 3.5E-05 7.5E-10 77.7 16.4 110 495-608 2-122 (266)
213 PF02239 Cytochrom_D1: Cytochr 98.2 9.8E-05 2.1E-09 78.1 20.0 196 205-436 7-206 (369)
214 KOG0293 WD40 repeat-containing 98.2 3.3E-05 7.2E-10 77.4 13.4 201 191-434 225-427 (519)
215 PTZ00421 coronin; Provisional 98.2 0.00024 5.2E-09 77.9 21.6 158 148-335 79-247 (493)
216 PF10647 Gmad1: Lipoprotein Lp 98.2 0.00026 5.5E-09 70.9 20.1 165 150-341 31-205 (253)
217 KOG4840 Predicted hydrolases o 98.2 0.00011 2.3E-09 68.1 15.4 108 495-612 36-148 (299)
218 KOG0296 Angio-associated migra 98.1 0.0047 1E-07 61.6 27.7 241 156-436 119-360 (399)
219 PF07433 DUF1513: Protein of u 98.1 0.0015 3.3E-08 65.2 24.4 216 156-397 19-255 (305)
220 PLN02919 haloacid dehalogenase 98.1 0.0014 3E-08 78.8 28.6 254 148-436 573-892 (1057)
221 KOG0272 U4/U6 small nuclear ri 98.1 6.6E-05 1.4E-09 75.7 14.5 225 156-428 188-416 (459)
222 PF02239 Cytochrom_D1: Cytochr 98.1 0.0001 2.2E-09 78.0 16.9 195 157-396 8-209 (369)
223 PF06028 DUF915: Alpha/beta hy 98.1 4.6E-05 1E-09 75.3 13.3 207 496-710 12-252 (255)
224 KOG0279 G protein beta subunit 98.1 0.00013 2.9E-09 69.7 15.6 151 154-337 74-226 (315)
225 PTZ00420 coronin; Provisional 98.1 0.0028 6.1E-08 70.2 28.5 214 191-441 75-302 (568)
226 COG3545 Predicted esterase of 98.1 7.8E-05 1.7E-09 67.1 13.1 118 550-692 38-156 (181)
227 KOG0271 Notchless-like WD40 re 98.1 6.2E-05 1.3E-09 74.8 13.5 179 147-354 250-461 (480)
228 PLN02919 haloacid dehalogenase 98.1 0.0016 3.4E-08 78.4 28.2 222 89-341 568-841 (1057)
229 COG1073 Hydrolases of the alph 98.1 3.4E-05 7.5E-10 79.6 12.4 78 635-714 218-298 (299)
230 KOG3253 Predicted alpha/beta h 98.0 7E-05 1.5E-09 79.2 13.7 167 494-695 175-348 (784)
231 COG3150 Predicted esterase [Ge 98.0 6.3E-05 1.4E-09 66.6 11.1 141 555-711 42-187 (191)
232 KOG0645 WD40 repeat protein [G 98.0 0.0047 1E-07 59.2 24.3 197 156-386 28-224 (312)
233 KOG0291 WD40-repeat-containing 98.0 0.00093 2E-08 72.4 22.0 191 90-328 352-547 (893)
234 KOG1446 Histone H3 (Lys4) meth 98.0 0.0066 1.4E-07 59.5 25.5 249 89-397 15-270 (311)
235 KOG0266 WD40 repeat-containing 98.0 0.00062 1.3E-08 74.7 21.1 162 145-336 204-367 (456)
236 COG3243 PhaC Poly(3-hydroxyalk 98.0 8.3E-05 1.8E-09 76.2 13.0 88 515-610 130-219 (445)
237 KOG0645 WD40 repeat protein [G 98.0 0.0026 5.6E-08 60.9 21.8 166 191-394 15-186 (312)
238 KOG0291 WD40-repeat-containing 98.0 0.0067 1.4E-07 66.1 27.3 218 153-417 318-539 (893)
239 PF06433 Me-amine-dh_H: Methyl 98.0 0.0036 7.7E-08 63.4 24.1 237 165-435 17-280 (342)
240 COG3490 Uncharacterized protei 98.0 0.0016 3.4E-08 63.0 19.7 217 191-437 68-315 (366)
241 PF12146 Hydrolase_4: Putative 97.9 1.4E-05 3.1E-10 63.5 5.0 57 472-538 1-57 (79)
242 PF12048 DUF3530: Protein of u 97.9 0.00076 1.6E-08 69.4 19.0 214 460-713 61-309 (310)
243 KOG0286 G-protein beta subunit 97.9 0.0054 1.2E-07 59.4 22.5 238 149-435 60-306 (343)
244 COG4257 Vgb Streptogramin lyas 97.9 0.0035 7.6E-08 60.3 20.9 226 156-435 74-308 (353)
245 KOG1446 Histone H3 (Lys4) meth 97.9 0.001 2.2E-08 65.0 17.7 136 150-312 146-287 (311)
246 PF05705 DUF829: Eukaryotic pr 97.9 0.00068 1.5E-08 67.6 17.1 202 496-710 1-240 (240)
247 KOG1445 Tumor-specific antigen 97.9 0.00025 5.4E-09 74.9 13.8 200 150-392 587-801 (1012)
248 KOG2139 WD40 repeat protein [G 97.8 0.0047 1E-07 61.5 21.4 94 156-265 209-302 (445)
249 KOG1516 Carboxylesterase and r 97.8 2.5E-05 5.3E-10 88.3 5.9 129 472-608 94-232 (545)
250 KOG0315 G-protein beta subunit 97.8 0.0055 1.2E-07 58.0 20.1 228 163-435 59-291 (311)
251 KOG0286 G-protein beta subunit 97.8 0.0057 1.2E-07 59.2 20.6 200 190-429 55-258 (343)
252 PF00975 Thioesterase: Thioest 97.8 0.00025 5.4E-09 70.2 12.3 97 497-607 2-103 (229)
253 KOG0275 Conserved WD40 repeat- 97.8 0.00045 9.7E-09 67.2 13.1 263 90-406 215-485 (508)
254 KOG2314 Translation initiation 97.8 0.03 6.5E-07 59.1 26.9 230 165-435 282-528 (698)
255 KOG4499 Ca2+-binding protein R 97.8 0.00078 1.7E-08 63.1 13.8 136 190-338 108-246 (310)
256 PF03096 Ndr: Ndr family; Int 97.8 0.0029 6.2E-08 62.7 18.6 219 472-711 8-277 (283)
257 COG1770 PtrB Protease II [Amin 97.7 0.0081 1.8E-07 65.4 23.3 219 191-440 129-356 (682)
258 KOG0318 WD40 repeat stress pro 97.7 0.026 5.5E-07 59.2 25.8 204 84-337 316-521 (603)
259 KOG0772 Uncharacterized conser 97.7 0.00092 2E-08 69.3 15.3 237 89-354 215-467 (641)
260 KOG2096 WD40 repeat protein [G 97.7 0.017 3.7E-07 56.6 22.5 220 77-332 75-309 (420)
261 PF06433 Me-amine-dh_H: Methyl 97.7 0.011 2.4E-07 59.9 22.2 209 194-436 98-324 (342)
262 KOG2931 Differentiation-relate 97.7 0.0048 1E-07 60.3 18.4 227 461-709 22-302 (326)
263 PF00151 Lipase: Lipase; Inte 97.7 5.6E-05 1.2E-09 78.2 5.4 113 492-608 68-187 (331)
264 PRK11138 outer membrane biogen 97.7 0.037 8E-07 59.7 27.6 228 151-436 117-357 (394)
265 PF01674 Lipase_2: Lipase (cla 97.6 0.00014 3E-09 70.1 7.5 88 498-593 4-94 (219)
266 KOG0296 Angio-associated migra 97.6 0.014 3.1E-07 58.3 21.3 219 156-419 161-388 (399)
267 KOG0263 Transcription initiati 97.6 0.00069 1.5E-08 73.8 13.2 142 152-328 501-646 (707)
268 KOG1407 WD40 repeat protein [F 97.6 0.0033 7.1E-08 59.9 15.9 182 193-418 67-250 (313)
269 PLN00181 protein SPA1-RELATED; 97.6 0.049 1.1E-06 64.6 30.2 140 155-328 545-687 (793)
270 KOG4497 Uncharacterized conser 97.6 0.0058 1.3E-07 60.1 17.7 90 301-406 319-408 (447)
271 COG3490 Uncharacterized protei 97.6 0.0079 1.7E-07 58.3 18.3 153 154-320 80-245 (366)
272 PF07819 PGAP1: PGAP1-like pro 97.6 0.00041 8.9E-09 67.9 9.8 101 495-606 4-121 (225)
273 KOG1445 Tumor-specific antigen 97.5 0.00087 1.9E-08 71.0 12.2 105 221-340 700-805 (1012)
274 KOG0639 Transducin-like enhanc 97.5 0.003 6.6E-08 65.3 15.8 228 156-430 432-663 (705)
275 TIGR02171 Fb_sc_TIGR02171 Fibr 97.5 0.00051 1.1E-08 77.4 11.2 98 203-320 319-420 (912)
276 COG4947 Uncharacterized protei 97.5 0.00025 5.5E-09 62.8 6.8 118 558-692 87-215 (227)
277 KOG2048 WD40 repeat protein [G 97.5 0.069 1.5E-06 57.8 25.4 168 240-435 379-551 (691)
278 KOG0772 Uncharacterized conser 97.5 0.018 3.9E-07 60.1 20.3 241 159-433 183-446 (641)
279 COG4257 Vgb Streptogramin lyas 97.5 0.066 1.4E-06 51.9 22.4 202 90-339 63-268 (353)
280 PF07676 PD40: WD40-like Beta 97.5 0.00022 4.7E-09 48.1 4.4 38 237-277 2-39 (39)
281 KOG0273 Beta-transducin family 97.4 0.025 5.5E-07 58.4 20.4 214 92-354 280-503 (524)
282 KOG1274 WD40 repeat protein [G 97.4 0.004 8.6E-08 69.3 15.7 147 154-334 108-263 (933)
283 KOG0305 Anaphase promoting com 97.4 0.022 4.7E-07 61.1 20.3 250 116-420 198-452 (484)
284 KOG0973 Histone transcription 97.4 0.0087 1.9E-07 67.9 18.1 123 190-332 129-252 (942)
285 KOG4497 Uncharacterized conser 97.4 0.0016 3.5E-08 63.9 10.5 141 196-378 14-155 (447)
286 KOG1407 WD40 repeat protein [F 97.4 0.031 6.6E-07 53.5 18.6 212 156-419 78-292 (313)
287 KOG0288 WD40 repeat protein Ti 97.3 0.002 4.4E-08 65.1 11.2 140 156-328 313-458 (459)
288 COG4814 Uncharacterized protei 97.3 0.0028 6.1E-08 60.5 11.6 207 495-711 46-285 (288)
289 PF13360 PQQ_2: PQQ-like domai 97.3 0.049 1.1E-06 54.0 21.8 183 221-436 46-234 (238)
290 PF05990 DUF900: Alpha/beta hy 97.3 0.0019 4E-08 63.7 11.0 141 493-663 16-168 (233)
291 COG3391 Uncharacterized conser 97.3 0.13 2.7E-06 55.1 25.3 205 194-436 77-287 (381)
292 KOG1274 WD40 repeat protein [G 97.3 0.042 9.1E-07 61.5 21.4 145 161-337 72-222 (933)
293 PLN00181 protein SPA1-RELATED; 97.2 0.093 2E-06 62.3 26.3 235 148-434 487-740 (793)
294 KOG2110 Uncharacterized conser 97.2 0.012 2.6E-07 59.0 15.2 156 148-333 91-250 (391)
295 KOG2139 WD40 repeat protein [G 97.2 0.014 3E-07 58.4 15.3 183 166-392 121-314 (445)
296 KOG0305 Anaphase promoting com 97.2 0.018 3.9E-07 61.6 17.4 220 164-430 196-419 (484)
297 PTZ00472 serine carboxypeptida 97.2 0.0019 4.2E-08 70.4 10.4 132 471-611 59-219 (462)
298 KOG2919 Guanine nucleotide-bin 97.1 0.11 2.5E-06 51.3 20.5 149 157-334 125-282 (406)
299 KOG2315 Predicted translation 97.1 0.066 1.4E-06 56.8 19.8 160 195-387 222-390 (566)
300 COG1506 DAP2 Dipeptidyl aminop 97.0 0.4 8.7E-06 54.9 27.8 200 165-397 149-350 (620)
301 KOG0973 Histone transcription 97.0 0.0068 1.5E-07 68.8 12.8 137 193-356 72-231 (942)
302 KOG0306 WD40-repeat-containing 97.0 0.088 1.9E-06 57.8 20.2 246 138-428 407-662 (888)
303 KOG0295 WD40 repeat-containing 97.0 0.062 1.3E-06 53.9 17.5 241 156-435 121-367 (406)
304 COG3204 Uncharacterized protei 97.0 0.13 2.7E-06 50.8 19.2 200 193-421 88-304 (316)
305 KOG1520 Predicted alkaloid syn 97.0 0.046 1E-06 55.9 16.9 146 149-313 121-277 (376)
306 PF06977 SdiA-regulated: SdiA- 96.9 0.18 4E-06 49.8 20.6 205 193-429 24-247 (248)
307 PF05577 Peptidase_S28: Serine 96.9 0.0039 8.3E-08 68.2 9.9 111 495-609 29-149 (434)
308 KOG1539 WD repeat protein [Gen 96.9 0.023 5.1E-07 62.7 15.1 146 149-330 498-645 (910)
309 KOG0263 Transcription initiati 96.9 0.044 9.5E-07 60.3 17.1 181 156-384 464-646 (707)
310 KOG3975 Uncharacterized conser 96.9 0.073 1.6E-06 50.9 16.3 99 492-593 26-129 (301)
311 KOG0278 Serine/threonine kinas 96.9 0.038 8.2E-07 52.5 14.3 146 153-333 153-299 (334)
312 KOG0303 Actin-binding protein 96.9 0.059 1.3E-06 54.6 16.4 159 149-334 88-250 (472)
313 KOG0289 mRNA splicing factor [ 96.9 0.16 3.5E-06 52.2 19.5 192 157-398 275-471 (506)
314 KOG0289 mRNA splicing factor [ 96.8 0.39 8.5E-06 49.5 22.0 224 164-436 240-466 (506)
315 TIGR03300 assembly_YfgL outer 96.8 0.41 8.9E-06 51.3 24.5 234 151-435 62-300 (377)
316 TIGR03300 assembly_YfgL outer 96.8 0.94 2E-05 48.5 32.6 269 93-436 60-342 (377)
317 KOG2106 Uncharacterized conser 96.8 0.28 6.1E-06 51.5 21.3 90 221-329 428-518 (626)
318 KOG1273 WD40 repeat protein [G 96.8 0.16 3.6E-06 50.0 18.4 143 162-336 42-186 (405)
319 KOG0273 Beta-transducin family 96.8 0.24 5.2E-06 51.5 20.3 246 146-436 237-486 (524)
320 KOG2394 WD40 protein DMR-N9 [G 96.8 0.012 2.5E-07 61.8 11.0 94 238-354 285-378 (636)
321 PLN02733 phosphatidylcholine-s 96.8 0.0026 5.7E-08 68.3 6.6 90 510-608 107-201 (440)
322 KOG0284 Polyadenylation factor 96.7 0.034 7.5E-07 56.4 13.5 262 91-419 99-370 (464)
323 KOG0303 Actin-binding protein 96.7 0.058 1.3E-06 54.6 14.9 207 91-330 84-293 (472)
324 KOG1273 WD40 repeat protein [G 96.7 0.14 2.9E-06 50.6 16.8 118 194-341 27-145 (405)
325 KOG0282 mRNA splicing factor [ 96.6 0.032 6.8E-07 57.9 12.9 145 154-330 226-371 (503)
326 COG3391 Uncharacterized conser 96.6 0.26 5.6E-06 52.7 20.8 203 152-395 83-289 (381)
327 KOG0265 U5 snRNP-specific prot 96.6 0.16 3.4E-06 49.8 16.8 136 241-406 45-180 (338)
328 KOG0282 mRNA splicing factor [ 96.6 0.012 2.7E-07 60.8 9.7 173 152-354 309-484 (503)
329 KOG0307 Vesicle coat complex C 96.5 0.02 4.3E-07 65.5 11.8 259 88-387 64-327 (1049)
330 KOG0275 Conserved WD40 repeat- 96.5 0.06 1.3E-06 52.9 13.2 239 150-437 221-472 (508)
331 KOG0319 WD40-repeat-containing 96.5 0.15 3.3E-06 55.8 17.5 158 145-336 20-182 (775)
332 KOG0643 Translation initiation 96.5 0.55 1.2E-05 45.4 19.1 142 221-386 74-219 (327)
333 PF06977 SdiA-regulated: SdiA- 96.5 0.045 9.9E-07 54.0 12.7 204 84-320 17-241 (248)
334 PRK13614 lipoprotein LpqB; Pro 96.4 0.28 6.2E-06 54.4 19.7 171 192-397 344-526 (573)
335 PF00450 Peptidase_S10: Serine 96.4 0.02 4.3E-07 62.3 10.6 139 464-611 16-184 (415)
336 KOG0310 Conserved WD40 repeat- 96.4 0.89 1.9E-05 47.7 21.3 149 154-336 79-228 (487)
337 KOG2565 Predicted hydrolases o 96.3 0.043 9.2E-07 55.5 11.5 125 466-605 127-261 (469)
338 KOG0277 Peroxisomal targeting 96.3 0.26 5.6E-06 47.2 15.8 166 248-434 13-182 (311)
339 PRK11138 outer membrane biogen 96.3 2.1 4.5E-05 46.1 28.9 231 93-394 115-358 (394)
340 KOG0643 Translation initiation 96.3 1.2 2.6E-05 43.3 24.3 152 156-334 65-221 (327)
341 PF04762 IKI3: IKI3 family; I 96.3 0.92 2E-05 54.1 24.1 96 249-354 215-314 (928)
342 PF13360 PQQ_2: PQQ-like domai 96.2 0.45 9.7E-06 47.0 18.8 190 153-394 35-235 (238)
343 KOG0319 WD40-repeat-containing 96.2 0.81 1.8E-05 50.4 20.9 227 156-430 162-395 (775)
344 PRK13613 lipoprotein LpqB; Pro 96.2 0.63 1.4E-05 52.3 21.1 167 192-394 364-544 (599)
345 KOG2314 Translation initiation 96.2 0.47 1E-05 50.5 18.4 198 194-418 350-556 (698)
346 KOG2096 WD40 repeat protein [G 96.2 0.24 5.2E-06 48.9 15.2 157 243-418 86-247 (420)
347 PF07082 DUF1350: Protein of u 96.2 0.06 1.3E-06 52.1 11.1 178 496-692 17-204 (250)
348 TIGR03712 acc_sec_asp2 accesso 96.1 0.35 7.6E-06 51.3 17.4 190 471-692 274-486 (511)
349 PF04762 IKI3: IKI3 family; I 96.1 2.6 5.6E-05 50.4 26.4 60 191-262 76-139 (928)
350 TIGR02604 Piru_Ver_Nterm putat 96.1 0.23 5E-06 52.9 16.4 139 194-343 17-182 (367)
351 PRK02888 nitrous-oxide reducta 96.0 2.1 4.7E-05 47.5 23.6 188 156-390 142-352 (635)
352 KOG0284 Polyadenylation factor 96.0 0.098 2.1E-06 53.3 12.3 206 79-331 128-337 (464)
353 PF08386 Abhydrolase_4: TAP-li 96.0 0.015 3.2E-07 49.1 5.6 59 648-711 34-92 (103)
354 KOG1063 RNA polymerase II elon 96.0 0.13 2.9E-06 55.8 13.7 123 190-330 525-647 (764)
355 KOG0265 U5 snRNP-specific prot 95.9 1.9 4.2E-05 42.5 22.7 131 154-315 101-232 (338)
356 cd00216 PQQ_DH Dehydrogenases 95.9 3.7 8E-05 45.6 31.6 139 273-436 256-428 (488)
357 COG5354 Uncharacterized protei 95.9 0.55 1.2E-05 49.5 17.3 122 194-335 226-350 (561)
358 COG4782 Uncharacterized protei 95.9 0.052 1.1E-06 55.2 9.8 111 494-613 115-239 (377)
359 KOG0639 Transducin-like enhanc 95.9 0.17 3.7E-06 52.9 13.6 148 147-330 510-662 (705)
360 PRK10252 entF enterobactin syn 95.9 0.091 2E-06 66.4 14.6 97 496-606 1069-1169(1296)
361 KOG0264 Nucleosome remodeling 95.9 0.54 1.2E-05 48.7 16.9 202 157-387 192-404 (422)
362 KOG0268 Sof1-like rRNA process 95.8 0.018 4E-07 57.5 6.2 144 156-332 201-346 (433)
363 KOG3967 Uncharacterized conser 95.8 0.051 1.1E-06 50.4 8.5 107 492-604 98-223 (297)
364 KOG4389 Acetylcholinesterase/B 95.8 0.011 2.3E-07 61.9 4.6 126 474-609 120-256 (601)
365 KOG1524 WD40 repeat-containing 95.8 0.21 4.6E-06 52.7 13.8 120 161-315 81-201 (737)
366 KOG0283 WD40 repeat-containing 95.7 0.42 9.1E-06 53.3 16.5 200 146-386 371-575 (712)
367 KOG3724 Negative regulator of 95.7 0.024 5.2E-07 62.7 6.8 70 524-602 132-210 (973)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 5 0.00011 44.9 30.7 60 273-337 271-337 (527)
369 KOG0294 WD40 repeat-containing 95.6 2.4 5.1E-05 42.2 19.4 151 146-331 45-197 (362)
370 COG5354 Uncharacterized protei 95.6 1.6 3.5E-05 46.2 19.3 202 195-434 136-350 (561)
371 KOG0277 Peroxisomal targeting 95.5 0.34 7.3E-06 46.5 13.0 180 164-384 37-218 (311)
372 KOG1007 WD repeat protein TSSC 95.5 0.67 1.5E-05 45.3 15.1 208 164-399 39-257 (370)
373 KOG2541 Palmitoyl protein thio 95.5 0.12 2.7E-06 50.1 10.2 95 495-604 24-124 (296)
374 KOG2048 WD40 repeat protein [G 95.5 3.2 6.8E-05 45.6 21.5 231 156-435 39-278 (691)
375 KOG4532 WD40-like repeat conta 95.5 0.9 1.9E-05 44.1 15.6 120 192-338 160-287 (344)
376 KOG0306 WD40-repeat-containing 95.5 2.5 5.5E-05 46.9 20.8 230 143-418 372-611 (888)
377 KOG0771 Prolactin regulatory e 95.4 0.5 1.1E-05 48.6 14.8 94 194-312 148-241 (398)
378 KOG1551 Uncharacterized conser 95.4 0.17 3.7E-06 48.7 10.7 33 573-605 194-227 (371)
379 KOG2394 WD40 protein DMR-N9 [G 95.3 0.032 7E-07 58.6 6.2 55 193-261 293-350 (636)
380 COG3319 Thioesterase domains o 95.3 0.05 1.1E-06 53.9 7.3 99 496-609 1-104 (257)
381 PRK13615 lipoprotein LpqB; Pro 95.3 1.4 3E-05 49.0 18.8 160 194-394 337-507 (557)
382 KOG2111 Uncharacterized conser 95.3 0.87 1.9E-05 45.3 15.2 154 147-331 97-256 (346)
383 KOG2315 Predicted translation 95.2 4.4 9.6E-05 43.5 21.2 230 150-418 131-373 (566)
384 PRK13614 lipoprotein LpqB; Pro 95.2 1.8 4E-05 48.2 19.5 166 246-436 345-522 (573)
385 PF11187 DUF2974: Protein of u 95.2 0.046 1E-06 53.2 6.4 50 558-607 68-122 (224)
386 PF07676 PD40: WD40-like Beta 95.1 0.026 5.6E-07 37.8 3.3 36 338-385 2-39 (39)
387 KOG0313 Microtubule binding pr 95.1 2.5 5.4E-05 43.1 18.2 132 243-406 260-395 (423)
388 PRK13613 lipoprotein LpqB; Pro 95.0 0.86 1.9E-05 51.3 16.6 159 153-337 373-543 (599)
389 PRK13615 lipoprotein LpqB; Pro 95.0 0.89 1.9E-05 50.5 16.4 154 152-335 343-504 (557)
390 PF05057 DUF676: Putative seri 94.9 0.064 1.4E-06 52.3 6.8 21 573-593 77-97 (217)
391 COG3204 Uncharacterized protei 94.9 4.6 0.0001 40.1 19.5 210 79-320 76-303 (316)
392 KOG2919 Guanine nucleotide-bin 94.8 3.4 7.4E-05 41.3 17.9 136 221-384 133-278 (406)
393 KOG1538 Uncharacterized conser 94.8 5 0.00011 44.0 20.5 51 148-205 18-68 (1081)
394 KOG1538 Uncharacterized conser 94.8 0.79 1.7E-05 49.8 14.6 57 192-260 14-70 (1081)
395 KOG2110 Uncharacterized conser 94.8 1 2.2E-05 45.7 14.5 142 221-390 106-251 (391)
396 KOG0295 WD40 repeat-containing 94.8 5.4 0.00012 40.6 22.6 224 156-426 163-402 (406)
397 KOG0269 WD40 repeat-containing 94.8 0.44 9.6E-06 52.7 13.0 152 153-333 144-296 (839)
398 KOG4283 Transcription-coupled 94.8 1.9 4E-05 42.5 15.7 162 155-340 56-228 (397)
399 TIGR02604 Piru_Ver_Nterm putat 94.7 1.4 2.9E-05 47.0 16.8 105 194-319 75-202 (367)
400 KOG0647 mRNA export protein (c 94.7 0.84 1.8E-05 45.0 13.3 96 243-354 27-123 (347)
401 KOG1282 Serine carboxypeptidas 94.7 0.16 3.5E-06 54.5 9.3 138 464-610 49-215 (454)
402 PLN02209 serine carboxypeptida 94.5 0.17 3.7E-06 54.7 9.4 139 464-611 44-215 (437)
403 COG1075 LipA Predicted acetylt 94.5 0.094 2E-06 54.9 7.3 98 497-608 61-164 (336)
404 KOG4378 Nuclear protein COP1 [ 94.4 0.32 7E-06 50.9 10.3 134 149-311 171-304 (673)
405 PLN03016 sinapoylglucose-malat 94.3 0.17 3.7E-06 54.7 8.8 131 471-610 48-212 (433)
406 PF07995 GSDH: Glucose / Sorbo 94.3 1.5 3.2E-05 46.0 15.5 130 90-231 3-158 (331)
407 KOG4388 Hormone-sensitive lipa 94.2 0.11 2.5E-06 55.4 6.8 65 649-715 788-856 (880)
408 KOG0283 WD40 repeat-containing 94.2 0.64 1.4E-05 51.9 12.8 151 150-330 417-575 (712)
409 KOG2182 Hydrolytic enzymes of 94.2 0.32 7E-06 51.6 10.0 114 492-608 83-207 (514)
410 KOG0264 Nucleosome remodeling 94.1 5.8 0.00013 41.4 18.6 194 194-421 128-338 (422)
411 KOG0310 Conserved WD40 repeat- 94.1 1 2.2E-05 47.3 13.1 197 192-435 28-228 (487)
412 PLN02193 nitrile-specifier pro 94.0 12 0.00025 41.4 24.8 211 166-398 194-419 (470)
413 KOG2106 Uncharacterized conser 94.0 9.8 0.00021 40.5 20.5 87 249-354 413-501 (626)
414 KOG1920 IkappaB kinase complex 94.0 17 0.00038 43.1 23.8 60 192-263 70-129 (1265)
415 KOG0313 Microtubule binding pr 93.8 4.3 9.4E-05 41.5 16.6 228 158-429 118-375 (423)
416 KOG2100 Dipeptidyl aminopeptid 93.8 3.8 8.2E-05 47.9 18.9 106 305-423 344-462 (755)
417 PF13449 Phytase-like: Esteras 93.7 9.8 0.00021 39.7 20.4 124 153-281 94-251 (326)
418 KOG1063 RNA polymerase II elon 93.5 4.3 9.3E-05 44.8 17.1 164 239-428 263-435 (764)
419 PF03088 Str_synth: Strictosid 93.5 0.25 5.5E-06 40.0 6.2 66 195-263 2-76 (89)
420 KOG1007 WD repeat protein TSSC 93.5 3.3 7.1E-05 40.7 14.5 111 192-328 125-242 (370)
421 PF03022 MRJP: Major royal jel 93.3 3.4 7.4E-05 42.1 15.7 127 191-341 61-227 (287)
422 PF02450 LCAT: Lecithin:choles 93.3 0.3 6.5E-06 52.3 8.4 82 512-608 66-160 (389)
423 KOG2281 Dipeptidyl aminopeptid 93.3 9.2 0.0002 42.2 18.9 70 367-436 514-587 (867)
424 KOG1009 Chromatin assembly com 93.2 0.7 1.5E-05 47.3 10.0 58 246-318 126-184 (434)
425 PRK02888 nitrous-oxide reducta 93.2 17 0.00038 40.6 22.6 132 165-334 215-352 (635)
426 PHA03098 kelch-like protein; P 93.1 5.4 0.00012 45.0 18.7 192 220-436 310-515 (534)
427 PF02333 Phytase: Phytase; In 93.0 11 0.00024 39.7 18.8 152 157-333 70-237 (381)
428 PF11288 DUF3089: Protein of u 92.9 0.1 2.3E-06 49.5 3.6 69 524-593 45-114 (207)
429 cd00216 PQQ_DH Dehydrogenases 92.9 18 0.0004 40.1 28.4 171 195-394 221-429 (488)
430 KOG1539 WD repeat protein [Gen 92.9 2.7 5.8E-05 47.3 14.6 58 271-339 554-612 (910)
431 KOG0268 Sof1-like rRNA process 92.8 0.43 9.4E-06 48.1 7.8 153 194-388 191-346 (433)
432 KOG0771 Prolactin regulatory e 92.8 1.1 2.5E-05 46.0 10.9 143 247-419 148-301 (398)
433 PHA02713 hypothetical protein; 92.7 11 0.00023 42.7 20.1 237 166-437 273-538 (557)
434 KOG1214 Nidogen and related ba 92.7 1.9 4.2E-05 48.2 13.2 200 92-337 1028-1230(1289)
435 KOG0278 Serine/threonine kinas 92.6 5.4 0.00012 38.5 14.4 130 273-431 165-298 (334)
436 COG3946 VirJ Type IV secretory 92.6 0.2 4.3E-06 51.6 5.4 67 515-593 278-345 (456)
437 PF07519 Tannase: Tannase and 92.6 0.62 1.3E-05 51.1 9.7 129 474-613 16-155 (474)
438 KOG2521 Uncharacterized conser 92.6 1.8 4E-05 44.7 12.4 215 494-717 38-294 (350)
439 PF15492 Nbas_N: Neuroblastoma 92.5 12 0.00025 37.2 16.9 78 249-342 3-82 (282)
440 KOG0640 mRNA cleavage stimulat 92.5 4.9 0.00011 39.9 14.3 160 193-387 175-335 (430)
441 TIGR03032 conserved hypothetic 92.3 14 0.00031 37.4 20.3 144 149-319 107-259 (335)
442 KOG4328 WD40 protein [Function 92.3 13 0.00028 39.1 17.7 161 192-386 188-352 (498)
443 PF01764 Lipase_3: Lipase (cla 92.2 0.46 1E-05 42.5 6.9 52 555-608 47-106 (140)
444 KOG1034 Transcriptional repres 92.0 3.3 7.1E-05 41.5 12.7 51 155-210 105-155 (385)
445 COG4287 PqaA PhoPQ-activated p 92.0 0.41 8.8E-06 48.5 6.6 154 555-715 214-389 (507)
446 KOG1523 Actin-related protein 91.7 2.5 5.3E-05 42.2 11.3 99 196-315 16-115 (361)
447 KOG0288 WD40 repeat protein Ti 91.6 2.4 5.1E-05 43.7 11.5 105 222-343 323-427 (459)
448 TIGR03606 non_repeat_PQQ dehyd 91.6 15 0.00033 39.8 18.5 107 156-265 42-166 (454)
449 KOG2183 Prolylcarboxypeptidase 91.4 0.42 9.1E-06 49.4 6.1 88 518-605 105-199 (492)
450 KOG0302 Ribosome Assembly prot 91.4 2.5 5.4E-05 43.1 11.3 144 221-389 234-380 (440)
451 KOG0302 Ribosome Assembly prot 91.2 12 0.00026 38.4 15.8 138 166-331 235-378 (440)
452 KOG1520 Predicted alkaloid syn 91.2 3.2 6.9E-05 42.9 12.1 145 88-256 114-277 (376)
453 KOG1214 Nidogen and related ba 90.9 20 0.00044 40.7 18.4 62 274-343 1091-1153(1289)
454 PHA03098 kelch-like protein; P 90.9 18 0.00038 40.8 19.4 215 153-399 293-521 (534)
455 KOG0307 Vesicle coat complex C 90.9 2.1 4.6E-05 49.7 11.6 160 147-330 164-326 (1049)
456 PHA02713 hypothetical protein; 90.8 29 0.00062 39.3 20.8 217 151-398 300-542 (557)
457 KOG0290 Conserved WD40 repeat- 90.8 16 0.00034 36.2 15.6 194 92-320 100-308 (364)
458 TIGR03606 non_repeat_PQQ dehyd 90.7 12 0.00025 40.7 16.5 37 79-118 20-56 (454)
459 KOG1524 WD40 repeat-containing 90.6 5.8 0.00013 42.4 13.5 58 245-318 106-164 (737)
460 KOG0640 mRNA cleavage stimulat 90.5 5.4 0.00012 39.7 12.3 158 244-435 173-338 (430)
461 PF03283 PAE: Pectinacetyleste 90.4 0.22 4.7E-06 52.4 3.2 37 556-592 138-174 (361)
462 KOG0316 Conserved WD40 repeat- 90.4 17 0.00038 34.9 19.5 144 158-339 74-219 (307)
463 PF13449 Phytase-like: Esteras 90.3 20 0.00043 37.4 17.8 85 301-390 147-252 (326)
464 KOG0647 mRNA export protein (c 90.3 18 0.0004 36.0 15.7 117 190-334 27-146 (347)
465 PF07519 Tannase: Tannase and 90.2 0.38 8.2E-06 52.8 4.9 65 648-712 353-426 (474)
466 cd00741 Lipase Lipase. Lipase 90.1 0.74 1.6E-05 42.0 6.2 36 556-593 12-47 (153)
467 PF09910 DUF2139: Uncharacteri 89.9 12 0.00025 37.4 14.0 147 221-393 20-185 (339)
468 KOG2111 Uncharacterized conser 89.8 3.5 7.6E-05 41.2 10.6 112 146-281 138-256 (346)
469 KOG4283 Transcription-coupled 89.8 23 0.00049 35.2 22.1 105 142-263 99-208 (397)
470 KOG4499 Ca2+-binding protein R 89.6 20 0.00044 34.5 21.0 138 247-406 112-259 (310)
471 KOG2321 WD40 repeat protein [G 89.6 16 0.00035 39.6 15.9 194 194-436 55-262 (703)
472 PLN02633 palmitoyl protein thi 89.5 1.9 4.1E-05 43.5 8.7 101 494-606 25-129 (314)
473 PF11768 DUF3312: Protein of u 89.3 11 0.00023 41.2 14.6 141 166-332 185-330 (545)
474 KOG1009 Chromatin assembly com 89.2 5.3 0.00012 41.2 11.6 101 240-356 62-177 (434)
475 KOG3621 WD40 repeat-containing 89.1 38 0.00083 37.9 18.7 48 382-433 307-354 (726)
476 KOG4328 WD40 protein [Function 89.1 33 0.00072 36.2 21.4 146 149-320 241-390 (498)
477 KOG3914 WD repeat protein WDR4 89.1 9.3 0.0002 39.5 13.2 158 248-435 67-226 (390)
478 TIGR03032 conserved hypothetic 88.9 5.7 0.00012 40.1 11.5 122 74-210 137-260 (335)
479 PF05096 Glu_cyclase_2: Glutam 88.8 14 0.00031 36.6 14.1 159 150-341 50-211 (264)
480 PF05787 DUF839: Bacterial pro 88.7 5.7 0.00012 44.2 12.8 115 249-376 355-521 (524)
481 KOG4378 Nuclear protein COP1 [ 88.6 38 0.00081 36.3 17.4 166 198-406 129-299 (673)
482 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.6 47 0.001 37.3 31.4 84 195-286 238-337 (527)
483 KOG3621 WD40 repeat-containing 88.3 3 6.4E-05 46.2 9.8 114 197-332 40-155 (726)
484 KOG4547 WD40 repeat-containing 88.2 25 0.00054 38.3 16.3 143 157-332 72-221 (541)
485 PF09910 DUF2139: Uncharacteri 88.1 11 0.00024 37.6 12.6 107 322-436 75-185 (339)
486 KOG0294 WD40 repeat-containing 88.1 20 0.00044 36.0 14.4 184 159-392 101-286 (362)
487 KOG0646 WD40 repeat protein [G 88.0 5.8 0.00013 41.6 11.2 157 246-432 84-247 (476)
488 PF03088 Str_synth: Strictosid 87.9 1.4 3.1E-05 35.7 5.5 51 165-230 37-88 (89)
489 PLN02606 palmitoyl-protein thi 87.8 2.9 6.2E-05 42.3 8.8 100 494-605 26-129 (306)
490 KOG0292 Vesicle coat complex C 87.7 45 0.00097 38.5 18.3 241 147-434 14-284 (1202)
491 PF03022 MRJP: Major royal jel 87.3 15 0.00033 37.4 14.0 201 94-320 6-255 (287)
492 PF05935 Arylsulfotrans: Aryls 87.3 52 0.0011 36.4 21.3 213 156-397 115-403 (477)
493 KOG1523 Actin-related protein 87.2 3.9 8.4E-05 40.9 8.9 93 247-355 14-111 (361)
494 cd00519 Lipase_3 Lipase (class 87.1 1.4 3E-05 43.4 6.2 51 556-608 112-168 (229)
495 KOG2041 WD40 repeat protein [G 87.1 42 0.00091 37.6 17.3 116 77-211 59-177 (1189)
496 PF04053 Coatomer_WDAD: Coatom 87.0 25 0.00054 38.3 16.1 181 78-318 22-213 (443)
497 KOG0646 WD40 repeat protein [G 86.8 38 0.00082 35.9 16.2 116 194-336 85-209 (476)
498 PLN02454 triacylglycerol lipas 86.7 1.1 2.4E-05 47.3 5.4 39 555-593 209-247 (414)
499 PF02333 Phytase: Phytase; In 86.6 34 0.00074 36.1 16.1 114 314-433 116-238 (381)
500 KOG0650 WD40 repeat nucleolar 86.5 15 0.00032 40.1 13.4 238 141-427 397-677 (733)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-46 Score=419.30 Aligned_cols=576 Identities=25% Similarity=0.342 Sum_probs=404.3
Q ss_pred CHHHHhccCCccCceEEcC-CCcEEEEeec-CC--CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceeEEE
Q 004735 80 TADVVSGASKRLGGTAVDG-HGRLIWLESR-PT--EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF 153 (732)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~--~~~~~~ 153 (732)
+.+.+..- ..+..+..+| ++.++++... +. ...+..+|..+.. ..+.++ ...+. ..++++
T Consensus 5 ~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~----------~~~~~~~~~~spd 70 (620)
T COG1506 5 DAEDLLAL-ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLT----------FGGGVSELRWSPD 70 (620)
T ss_pred CHHHHHhh-hcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccc----------cCCcccccccCCC
Confidence 33444433 4567788888 8888888763 11 1222333432211 111111 11111 223445
Q ss_pred CCEEEEEeCCC---CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccC----CC-----------
Q 004735 154 GDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR----QD----------- 215 (732)
Q Consensus 154 ~~~i~f~~~~~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~----~~----------- 215 (732)
+..++|..... .++|+++.+ + .++.. .....+..|+|+|+++++...... +.
T Consensus 71 g~~~~~~~~~~~~~~~l~l~~~~---g---~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (620)
T COG1506 71 GSVLAFVSTDGGRVAQLYLVDVG---G---LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVW 140 (620)
T ss_pred CCEEEEEeccCCCcceEEEEecC---C---ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeeccccee
Confidence 55677776222 378888865 2 12221 223366789999999888321110 10
Q ss_pred --CC-CceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe
Q 004735 216 --AL-NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV 292 (732)
Q Consensus 216 --~~-~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~ 292 (732)
.. ....++|++|..+ . ...+..+......+++++|++.++.+.......||. ...++.... ++.+ ..+
T Consensus 141 ~~~~g~~~~~l~~~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~---~~~ 211 (620)
T COG1506 141 FDGRGGERSDLYVVDIES-K---LIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWV-TNLYVLIEG-NGEL---ESL 211 (620)
T ss_pred ecCCCCcccceEEEccCc-c---cccccCCCCceeeeeeCCCCceeEEeeeccccCCce-EeeEEEecC-CCce---EEE
Confidence 00 1246777777765 3 445555555566778888888888777555433442 223333333 5554 333
Q ss_pred cCCCCCccccCcCceeCCCCc-EEEEEeccC-Ce---eeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecC
Q 004735 293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-GF---WNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHG 366 (732)
Q Consensus 293 ~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~-g~---~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~ 366 (732)
.... .+...+.|.+||+ +.+...... +. ..++.++.+.++..... ..+ . ....|.. ... .
T Consensus 212 ~~~~----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~~---~~~-~---- 277 (620)
T COG1506 212 TPGE----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGD-D-TRGAWAV---EGG-L---- 277 (620)
T ss_pred cCCC----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCC-c-ccCcHHh---ccc-c----
Confidence 3333 5678899999999 777766522 21 23445553334333311 111 0 0111111 001 1
Q ss_pred CCCEEEEEEEE-CCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEe
Q 004735 367 EKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVW 445 (732)
Q Consensus 367 ~~~~l~~~s~~-~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~ 445 (732)
+++.+++.... .+...++.++..++....+..+...+..++.+++.+++..+++..|.++|+++. ++..+++
T Consensus 278 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~----- 350 (620)
T COG1506 278 DGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLT----- 350 (620)
T ss_pred CCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEe-----
Confidence 56667777766 677778877766666666666667777776688899999999999999999987 3333322
Q ss_pred cCCCCCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCC
Q 004735 446 SSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW 525 (732)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~ 525 (732)
......+....+.++|.+++++. ||.++++|++.|.+.+ +.+++|+||++||||..+....+....+.|+.+||
T Consensus 351 -~~~~~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~~~----~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~ 424 (620)
T COG1506 351 -SSNNSGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPGFD----PRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGY 424 (620)
T ss_pred -ecccccccccccCCceEEEEEcC-CCCEEEEEEecCCCCC----CCCCCCEEEEeCCCCccccccccchhhHHHhcCCe
Confidence 22234455677889999999998 9999999999998854 35568999999999998888889999999999999
Q ss_pred EEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec
Q 004735 526 AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (732)
Q Consensus 526 ~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~ 605 (732)
+|+.+|||||+|||++|.+....+||..+++|+.++++++.+.+.+|++||+|+|+|+||||+++++++.++|+++++..
T Consensus 425 ~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~ 504 (620)
T COG1506 425 AVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVA 504 (620)
T ss_pred EEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999666899999888
Q ss_pred CcCCHHHHHhh-cchhhhhhhhhhcC----ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC
Q 004735 606 GVADLSMLRAE-THKFESRYIDNLVG----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680 (732)
Q Consensus 606 ~~~d~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (732)
+..++..+... +..+.. ....... +.+.|..+||+.++.++++|+|||||++|.+||.+|+++|+++|+.+|++
T Consensus 505 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~ 583 (620)
T COG1506 505 GGVDWLLYFGESTEGLRF-DPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKP 583 (620)
T ss_pred CcchhhhhccccchhhcC-CHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCce
Confidence 87766554332 222211 1222222 45789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 681 VALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 681 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+++++||+++|++..+++....++.+++||+++++.
T Consensus 584 ~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 584 VELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred EEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999973
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=2.6e-44 Score=405.39 Aligned_cols=572 Identities=12% Similarity=0.082 Sum_probs=393.0
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCC---CCCcccCCCC-CcccccccccCCceeEEECCEEEEEeCCCC--
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAG---DEPSDITPKE-YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-- 165 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~-- 165 (732)
+.|... |+.+||....++ .++.||++....+ +..+.|++.. .......+..++..++++++.|+|.....|
T Consensus 75 ~~p~~~-g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E 151 (686)
T PRK10115 75 SAPYIK-NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRR 151 (686)
T ss_pred CCCEEE-CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcE
Confidence 345544 888888876554 3567776654211 1234444322 111111122233333444558888876655
Q ss_pred --eEEEEeCCCCCCC--ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 166 --RLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 166 --~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
+|+++|+.+ |. +..+... . ..+.|++||+.++|++.+... ....+||+.++.++..+ .+.|..
T Consensus 152 ~~~l~v~d~~t--g~~l~~~i~~~------~-~~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~-d~lv~~ 218 (686)
T PRK10115 152 QYGIRFRNLET--GNWYPELLDNV------E-PSFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQ-DELVYE 218 (686)
T ss_pred EEEEEEEECCC--CCCCCccccCc------c-eEEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhH-CeEEEe
Confidence 799999987 65 3444332 2 347899999998888774321 11379999999987211 445544
Q ss_pred CC-C-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 242 GS-D-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 242 ~~-~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
+. . +......|.||+++....... ..+++++++.+ .+++. ..++.... .....+. ...+.+++.+
T Consensus 219 e~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~--~~~~~~~~----~~~~~~~-~~~~~ly~~t 286 (686)
T PRK10115 219 EKDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEP--FVFLPRRK----DHEYSLD-HYQHRFYLRS 286 (686)
T ss_pred eCCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCc--eEEEECCC----CCEEEEE-eCCCEEEEEE
Confidence 32 2 222233355999887443222 24567777743 13443 22232221 1111111 1123388888
Q ss_pred eccCCeeeEEEEecc-CCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 319 DRKNGFWNLHKWIES-NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~-~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+.......|.++++. .++.+.|.++.. .+. ...+.+ .++.|++...++|...|++++++++..+.|+
T Consensus 287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~-----~~~--i~~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDEQQWEELIPPRE-----NIM--LEGFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred cCCCCCceEEEecCCCcccCeEEECCCC-----CCE--EEEEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 765567789988887 455666664421 111 112233 3568999999999999999998877778776
Q ss_pred cC-CCceEEe--e--EeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEeeccCCC
Q 004735 398 IP-FTDIDNI--T--LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPG 472 (732)
Q Consensus 398 ~~-~~~v~~~--~--~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 472 (732)
.+ ...+..+ . .+++.+++..++...|.++|.+|+++++.+.|+. .....+++..+ .++++++++. ||
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~------~~~~~~~~~~~-~~e~v~~~s~-DG 426 (686)
T PRK10115 355 FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQ------TEVPGFDAANY-RSEHLWITAR-DG 426 (686)
T ss_pred CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEe------cCCCCcCcccc-EEEEEEEECC-CC
Confidence 32 2222222 1 3346799999999999999999999887655542 22233555545 7899999998 99
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 552 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~ 552 (732)
.+|++++..++... ..++.|+||++|||++......|....+.|+++||+|+.+|+||++|+|+.|.+.....++.
T Consensus 427 ~~Ip~~l~~~~~~~----~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~ 502 (686)
T PRK10115 427 VEVPVSLVYHRKHF----RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKK 502 (686)
T ss_pred CEEEEEEEEECCCC----CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCC
Confidence 99999655544311 14567999999999999989999999999999999999999999999999999998888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-cchhhhhhhhhhcC
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-THKFESRYIDNLVG 630 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~~~~~~~ 630 (732)
.+++|+.+++++|++++.+|++|++++|.|+||+++.+++. +|++|+|+|+..|++|+..+... ........ ...+|
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~-~~e~G 581 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGE-FEEWG 581 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhH-HHHhC
Confidence 99999999999999999999999999999999999999998 89999999999999998876421 11111111 11223
Q ss_pred C---h---hhhhhcCccccCCCCCCC-EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe---CCCCccCCCc-ccH
Q 004735 631 S---E---KDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY---EGEQHGFRKA-ENI 699 (732)
Q Consensus 631 ~---~---~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~---~~~gH~~~~~-~~~ 699 (732)
+ + +.+..+||+.++++++.| +||+||.+|.+||+.++.+++++|++++++.+++++ +++||+.... ...
T Consensus 582 ~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 582 NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 2 2 345679999999999999 677899999999999999999999999998888888 9999984321 222
Q ss_pred HHHHHHHHHHHHHHhCC
Q 004735 700 KFTLEQQMVFFARVVGH 716 (732)
Q Consensus 700 ~~~~~~~~~fl~~~l~~ 716 (732)
.+.....+.|+.+.++.
T Consensus 662 ~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 662 YEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33444568888888763
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=332.15 Aligned_cols=495 Identities=19% Similarity=0.227 Sum_probs=363.5
Q ss_pred eeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC------------------------Ccee
Q 004735 193 YADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------------------------DFYA 247 (732)
Q Consensus 193 ~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~------------------------~~~~ 247 (732)
..||+.+| |+.+|+|+.. .+||+.++.++. .++||... +.+.
T Consensus 202 ~~dP~lcP~~~~fia~i~~----------~dl~V~n~~~~~---ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~ 268 (867)
T KOG2281|consen 202 RMDPKLCPADPDFIAYIKV----------CDLWVLNILTGE---EKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFE 268 (867)
T ss_pred ccCcccCCCCccceeeeeh----------hhhhhhhhhhch---hhceeeeeccccccccchhhcCcchHHHHHHHHhhc
Confidence 36788888 5999999876 688999888887 66665210 1223
Q ss_pred ccccCCC----CCeEEEEeccCC-------------------------CCCCCccEEEEEEecC--CCceeeeEE---ec
Q 004735 248 FPRMDPR----GERMAWIEWHHP-------------------------NMPWDKAELWVGYISE--NGDVYKRVC---VA 293 (732)
Q Consensus 248 ~p~~SPD----G~~la~~~~~~~-------------------------~~~~~~~~l~v~d~~~--~g~~~~~~~---~~ 293 (732)
+--|||- -.+|+|...|++ +.++....|-++.+.. .|+...+.. .-
T Consensus 269 GyWW~p~s~~~~~rIlYeeVdesev~V~h~~s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~ 348 (867)
T KOG2281|consen 269 GYWWSPPSGLKILRILYEEVDESEVEVIHVPSPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQ 348 (867)
T ss_pred ceeecCCCCCceEEEEeeecChhheEEEeccCcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhccc
Confidence 4567862 246777765543 1222334455554441 133322111 10
Q ss_pred CC--CCCccccCcCceeCCCCc-EEE-EEeccCCeeeEEEEeccCCeE---------------------EEecccccccC
Q 004735 294 GF--DPTIVESPTEPKWSSKGE-LFF-VTDRKNGFWNLHKWIESNNEV---------------------LAIYSLDAEFS 348 (732)
Q Consensus 294 ~~--~~~~~~~~~~~~wspDg~-l~~-~~~~~~g~~~l~~~d~~~g~~---------------------~~l~~~~~~~~ 348 (732)
.. .-.|+.++.+..|.|||+ ++. .-++++.+-+|..++++.... ..+.++ .
T Consensus 349 ~~~~~f~~~EYI~Ragwtpdgkyvwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee----~ 424 (867)
T KOG2281|consen 349 PFHCLFEDVEYIARAGWTPDGKYVWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEE----P 424 (867)
T ss_pred ccccccccceeeeeccccCCCcEEEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEec----C
Confidence 00 113446788899999999 433 334544555677777655322 111111 2
Q ss_pred CCceeecccceeeeeec--CCCCEEEEEEEECCEEEEEEEECCC----------------------CceEEeccCCCceE
Q 004735 349 RPLWVFGINSYEIIQSH--GEKNLIACSYRQNGRSYLGILDDFG----------------------HSLSLLDIPFTDID 404 (732)
Q Consensus 349 ~~~w~~~~~~~~~~~~~--~~~~~l~~~s~~~g~~~ly~~~~~~----------------------~~~~~lt~~~~~v~ 404 (732)
...|....+-+.+++.. +....++|++++.+..|||.+.... ++...||.+.|.|.
T Consensus 425 sd~winiHd~f~~~~~~~~e~~~~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl 504 (867)
T KOG2281|consen 425 SDGWINIHDIFHPLPQSTHEASYPFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVL 504 (867)
T ss_pred CCceEEhhhcccccccCCccceeeEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeeh
Confidence 34677655556665422 2334589999999999999886433 23457788888765
Q ss_pred Ee----eEeCCEEEEEEeCCCCCcE--EEEEEcC-CCcceeeee---------------------------EEEecC---
Q 004735 405 NI----TLGNDCLFVEGASGVEPSS--VAKVTLD-DHKLKAVDF---------------------------KVVWSS--- 447 (732)
Q Consensus 405 ~~----~~~~~~~~~~~~~~~~~~~--ly~~dl~-~~~~~~lt~---------------------------~~~~~~--- 447 (732)
.. +++-.+++|+.+..++|.+ ||++.++ .|+..+||+ ...+..
T Consensus 505 ~r~Gi~VdE~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~ 584 (867)
T KOG2281|consen 505 ARHGIWVDEVRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSW 584 (867)
T ss_pred hhcCeeecccceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccC
Confidence 43 5667889999999999987 9999998 788989986 011100
Q ss_pred CCCC---------------ccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-
Q 004735 448 SPDT---------------LKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG- 511 (732)
Q Consensus 448 ~~~~---------------~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~- 511 (732)
.... ...+.++..+|.+.|++. .|..+.+.+|+|.+.. +++++|+|++++|||..+...
T Consensus 585 ~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~-tg~~lYgmiyKPhn~~----pgkkYptvl~VYGGP~VQlVnn 659 (867)
T KOG2281|consen 585 PENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSK-TGLTLYGMIYKPHNFQ----PGKKYPTVLNVYGGPGVQLVNN 659 (867)
T ss_pred CccCcccchhhHHHHHHhcCCCCCccCChhheeeecC-CCcEEEEEEEccccCC----CCCCCceEEEEcCCCceEEeec
Confidence 0000 011234556678889997 8999999999999844 588899999999999865433
Q ss_pred ccc----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC-CCCCCcEEEEEcChHHH
Q 004735 512 ILN----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGY 586 (732)
Q Consensus 512 ~~~----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~i~G~S~GG~ 586 (732)
.|. .....|+++||.|+.+|.||+..+|..|...+...+|..+++|.++++++|++++ .+|.+||+|.|+|+|||
T Consensus 660 sfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGY 739 (867)
T KOG2281|consen 660 SFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGY 739 (867)
T ss_pred cccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccH
Confidence 222 3557789999999999999999999999999999999999999999999999985 89999999999999999
Q ss_pred HHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC---CCEEEEEeCCCCcc
Q 004735 587 TTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS---CPIILFQGLEDKVV 662 (732)
Q Consensus 587 ~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~Lii~G~~D~~v 662 (732)
++++.++ +|+.|+++|+.+|+++|..+.. .+..+||+..-.+++.|..-|.+.++.++. ..+|++||--|..|
T Consensus 740 LSlm~L~~~P~IfrvAIAGapVT~W~~YDT---gYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENV 816 (867)
T KOG2281|consen 740 LSLMGLAQYPNIFRVAIAGAPVTDWRLYDT---GYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENV 816 (867)
T ss_pred HHHHHhhcCcceeeEEeccCcceeeeeecc---cchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccch
Confidence 9999998 9999999999999999876533 234556665545678898888888888775 45999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 663 PPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 663 ~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
+..+.-.+..+|.++|++.++++||++.|++..++..+..-.+++.|+++
T Consensus 817 HF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 817 HFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred hhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999989888888899999876
No 4
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=308.76 Aligned_cols=448 Identities=24% Similarity=0.290 Sum_probs=307.0
Q ss_pred cccCCCCCeEEEEeccCCC---------------------------CCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 249 PRMDPRGERMAWIEWHHPN---------------------------MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~---------------------------~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
..|||||.+++|...++.. .|.....|++.|.. +..... .......+.-+.
T Consensus 212 ~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~-~~~~~~-~~~~~~~~~~~~ 289 (755)
T KOG2100|consen 212 IWWSPDGDRLAYASFNDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLH-DPPRLG-IPPPTNQRSGEY 289 (755)
T ss_pred ceeCCCCceeEEEEecccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCC-Cceeec-cCCccccccCce
Confidence 4589999999988754331 12234456666644 222111 011111111114
Q ss_pred cCcCceeCCCCcEEEE-EeccCCeeeEEEEeccCCeEEEecccccccCCC-ceeeccc-ceeeeeecCCC-CEEEEEEEE
Q 004735 302 SPTEPKWSSKGELFFV-TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGIN-SYEIIQSHGEK-NLIACSYRQ 377 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~-~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w~~~~~-~~~~~~~~~~~-~~l~~~s~~ 377 (732)
++....|..+.++.++ .++.+...-+-..|.. +..+..... ..+ .|..... ...++. ++ ..+++.+..
T Consensus 290 ~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~----~~~~~W~~~~~~~~~~~~---d~~~~~~~~~~~ 361 (755)
T KOG2100|consen 290 YVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEE----SSDGGWVEHQNVEPVFSS---DGSSYLKVDSVS 361 (755)
T ss_pred EEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEec----cccccccccccccceEee---cCCceeEEEeec
Confidence 5666778888774443 4442222222333333 222221111 122 4664333 122222 44 456666666
Q ss_pred CC-EEEEEEEECCCC-ceEEeccCCCceEEe--eEeCCEEEEEEeCCCCC--cEEEEEEcCCCcceeeee----------
Q 004735 378 NG-RSYLGILDDFGH-SLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVDF---------- 441 (732)
Q Consensus 378 ~g-~~~ly~~~~~~~-~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~--~~ly~~dl~~~~~~~lt~---------- 441 (732)
++ ..|+..+....+ ..+.+|.+.|.+..+ ...+...+++.+....+ .+||.+++.+...+.+|-
T Consensus 362 ~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~ 441 (755)
T KOG2100|consen 362 DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCSLITGPCTYL 441 (755)
T ss_pred cCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccccccccccCCCCcceEE
Confidence 66 788888887777 778899999998766 22344445555444333 449999888765544442
Q ss_pred EEEecC--------CCCCccC-----C------------------------CCCCCcEEEEeeccCCCeEEEEEEEcCCC
Q 004735 442 KVVWSS--------SPDTLKY-----K------------------------SYFSLPELIEFPTEVPGQKAYAYYYPPSN 484 (732)
Q Consensus 442 ~~~~~~--------~~~~~~~-----~------------------------~~~~~~~~i~~~~~~~g~~i~~~~~~P~~ 484 (732)
...++. ...+..+ . ..+...+...+.. +|....+.+..|++
T Consensus 442 ~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~--~~~~~~~~~~lP~~ 519 (755)
T KOG2100|consen 442 SVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI--DGITANAILILPPN 519 (755)
T ss_pred EEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe--ccEEEEEEEecCCC
Confidence 000000 0000000 0 0111122222222 67788899999988
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCCccC---CcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH
Q 004735 485 PIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC 561 (732)
Q Consensus 485 ~~~~~~~~~~~P~vl~~HGg~~~~~~---~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~ 561 (732)
.. +.+++|+|+.+||||++... ....+....+..+|++|+.+|+||++++|..++.....++|..+++|+..+
T Consensus 520 ~~----~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~ 595 (755)
T KOG2100|consen 520 FD----PSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEA 595 (755)
T ss_pred CC----CCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHH
Confidence 44 46789999999999974333 233455556778899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcC
Q 004735 562 ATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 639 (732)
Q Consensus 562 i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p-~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 639 (732)
++++.+.+.+|.+||+|+|+|+|||+++.++. .+ +.|+|+++++|++|+. ++..++ ..+||.....+...|.+.+
T Consensus 596 ~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~~--terymg~p~~~~~~y~e~~ 672 (755)
T KOG2100|consen 596 VKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDSTY--TERYMGLPSENDKGYEESS 672 (755)
T ss_pred HHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eecccc--cHhhcCCCccccchhhhcc
Confidence 99999999999999999999999999999999 54 7899999999999998 544433 2344444444555699999
Q ss_pred ccccCCCCCCCE-EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 640 PINFVDKFSCPI-ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 640 p~~~~~~i~~P~-Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+...+..++.|. |++||+.|..|+.+++..++++|+.+|+++++++||+++|++...+.....+..+..||..++.
T Consensus 673 ~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~ 749 (755)
T KOG2100|consen 673 VSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFG 749 (755)
T ss_pred ccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcC
Confidence 999999999775 9999999999999999999999999999999999999999999888888999999999997776
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-32 Score=281.54 Aligned_cols=560 Identities=14% Similarity=0.100 Sum_probs=384.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCC-CcccCCCCCcccccccc-cCCceeEE--ECCEEEEEeCCCC----eEEEE
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVRTTAQE-YGGGAFRI--FGDTVIFSNYKDQ----RLYKH 170 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~~~~~~-~g~~~~~~--~~~~i~f~~~~~~----~l~~~ 170 (732)
+...|+... .+++++.++++.+..|+. .+.|++. +.+..-++ |..+.+++ +.+.++++.+..+ .|.+.
T Consensus 85 ~~~~Yy~r~--~~g~~y~~~~R~~~~g~~~eevlLD~--n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~k 160 (682)
T COG1770 85 GPYEYYSRT--EEGKEYPIYCRQPDEGGEGEEVLLDV--NKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFK 160 (682)
T ss_pred CCeeEEEEe--cCCCcceeEEeccCCCCCceeEeecc--hhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEE
Confidence 444555444 456888888875554444 3334433 33333223 23344444 4557777765443 57777
Q ss_pred eCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCccccEEccc--CCCce
Q 004735 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQEPKVLVS--GSDFY 246 (732)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~~~~~lt~--~~~~~ 246 (732)
|+.++.-.+..++. ....++|.+||+.++|++.+....+ ..||...+.+ .. -+.+-. +..|.
T Consensus 161 dL~tg~~~~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~~rp----~kv~~h~~gt~~~~---d~lvyeE~d~~f~ 226 (682)
T COG1770 161 DLATGEELPDEITN-------TSGSFAWAADGKTLFYTRLDENHRP----DKVWRHRLGTPGSS---DELVYEEKDDRFF 226 (682)
T ss_pred ecccccccchhhcc-------cccceEEecCCCeEEEEEEcCCCCc----ceEEEEecCCCCCc---ceEEEEcCCCcEE
Confidence 88772112233332 1366789999999999988765443 7899988887 33 344443 33455
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC--Cc-EEEEEeccCC
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GE-LFFVTDRKNG 323 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--g~-l~~~~~~~~g 323 (732)
....-|-+.++|+....++ ..+++++++.+ +.+.....+.+... ....+.| |. +++.++. .|
T Consensus 227 ~~v~~s~s~~yi~i~~~~~-----~tsE~~ll~a~-~p~~~p~vv~pr~~--------g~eY~~eh~~d~f~i~sN~-~g 291 (682)
T COG1770 227 LSVGRSRSEAYIVISLGSH-----ITSEVRLLDAD-DPEAEPKVVLPREN--------GVEYSVEHGGDRFYILSNA-DG 291 (682)
T ss_pred EEeeeccCCceEEEEcCCC-----cceeEEEEecC-CCCCceEEEEEcCC--------CcEEeeeecCcEEEEEecC-CC
Confidence 5566677778876544333 46789999988 44433344444432 2222222 45 6777777 55
Q ss_pred -eeeEEEEec--cCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 324 -FWNLHKWIE--SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 324 -~~~l~~~d~--~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
...|++... .....+.+++.+....-. .+.. -.++|++...+.|-..|++.+.++++.+.|..++
T Consensus 292 knf~l~~ap~~~~~~~w~~~I~h~~~~~l~-------~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~ 359 (682)
T COG1770 292 KNFKLVRAPVSADKSNWRELIPHREDVRLE-------GVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFDD 359 (682)
T ss_pred cceEEEEccCCCChhcCeeeeccCCCceee-------eeee-----eccEEEEEecccCCceEEEEecCCCceeeEEecc
Confidence 667877655 223345555443222111 1111 3567888888889999999999888888777654
Q ss_pred CceEE-e----eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCCCCcEEEEeeccCCCeEE
Q 004735 401 TDIDN-I----TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKA 475 (732)
Q Consensus 401 ~~v~~-~----~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i 475 (732)
..... + ..+...+.+.+++.++|..+|-+|+.+++.+.|.+..+.. .+++... ..+.++.+.. ||..|
T Consensus 360 ~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~-----g~dp~~Y-~s~riwa~a~-dgv~V 432 (682)
T COG1770 360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG-----GFDPEDY-VSRRIWATAD-DGVQV 432 (682)
T ss_pred hhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC-----CCChhHe-EEEEEEEEcC-CCcEe
Confidence 32211 1 2456789999999999999999999999987776655533 2444444 2577888876 99999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccH
Q 004735 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDV 555 (732)
Q Consensus 476 ~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~ 555 (732)
+..++.-++.. .+++.|++|+.+|..+......|+...-.|..+||+....+.||.+.-|+.|.+..........+
T Consensus 433 PVSLvyrkd~~----~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf 508 (682)
T COG1770 433 PVSLVYRKDTK----LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTF 508 (682)
T ss_pred eEEEEEecccC----CCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccH
Confidence 99888776522 35778999999999888888899888888999999999999999999999999998877777889
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-cchhhhhhhhhhcCC--
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-THKFESRYIDNLVGS-- 631 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~-- 631 (732)
.|+.+++++|.+++..++++|+++|.|+||+++..++. .|++|+++|+..|+.|....... ..++. ..-...+||
T Consensus 509 ~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT-~~E~~EWGNP~ 587 (682)
T COG1770 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLT-VTEWDEWGNPL 587 (682)
T ss_pred HHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCC-ccchhhhCCcC
Confidence 99999999999999999999999999999999999998 99999999999999997654332 22211 111122333
Q ss_pred -h---hhhhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCC---CEEEEEeCCCCccC-CCcccHHHH
Q 004735 632 -E---KDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL---PVALVEYEGEQHGF-RKAENIKFT 702 (732)
Q Consensus 632 -~---~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~---~~~~~~~~~~gH~~-~~~~~~~~~ 702 (732)
+ +.++.+||+.++..-. +|+|++.|.+|+.|...+..++..+|++.+. ++-+.+=.++||+- +..-...+.
T Consensus 588 d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee 667 (682)
T COG1770 588 DPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEE 667 (682)
T ss_pred CHHHHHHHhhcCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHH
Confidence 2 3557889999988755 5699999999999999999999999998753 45666667899963 222222333
Q ss_pred HHHHHHHHHHHhC
Q 004735 703 LEQQMVFFARVVG 715 (732)
Q Consensus 703 ~~~~~~fl~~~l~ 715 (732)
......|+.+.++
T Consensus 668 ~A~eYaF~l~~~~ 680 (682)
T COG1770 668 IAFEYAFLLKLAG 680 (682)
T ss_pred HHHHHHHHhhhcc
Confidence 3445667666554
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.97 E-value=5.7e-31 Score=258.54 Aligned_cols=205 Identities=35% Similarity=0.578 Sum_probs=177.8
Q ss_pred cccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHH
Q 004735 512 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 591 (732)
Q Consensus 512 ~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 591 (732)
.|+...+.|+++||+|+.+||||++|+|..+......+++..+++|+.++++++++++.+|++||+|+|+|+||++++++
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCcceEEEeecCcCCHHHHHhhcchhhh-hhhhhh--cCChhhhhhcCccccCCC--CCCCEEEEEeCCCCccChH
Q 004735 592 LA-FRDTFKAGASLYGVADLSMLRAETHKFES-RYIDNL--VGSEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 592 ~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D~~v~~~ 665 (732)
+. +|++|+++++.+|+.|+..+......+.. .+.... ..+++.|...+|+..+.+ +++|+|++||++|.+||+.
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~ 161 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPS 161 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTH
T ss_pred hcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHH
Confidence 99 99999999999999998766554322222 222211 125678888999999988 8899999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
++.+++++|++.|++++++++|+++|++..+++..+..+++++||+++|+.
T Consensus 162 ~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 162 QSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998888899999999999999983
No 7
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.96 E-value=1.8e-25 Score=231.24 Aligned_cols=316 Identities=22% Similarity=0.270 Sum_probs=251.7
Q ss_pred EEEEEECCCCceEEeccCCC-ceE--EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeeeEEEecCCCCCccCCCCC
Q 004735 382 YLGILDDFGHSLSLLDIPFT-DID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYF 458 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~~~-~v~--~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~~~~~~~~~~ 458 (732)
.|-+.+..+-..+.|..+.. .+. ....++..+++..++..+|+.+|+.++.+++++.+. . .+..++.+.+
T Consensus 320 ~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik------~-~p~~FDa~~~ 392 (648)
T COG1505 320 RLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIR------E-QPVQFDADNY 392 (648)
T ss_pred eEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhhh------h-ccCCcCccCc
Confidence 45555665544555655432 222 224567788999999999999999999999875433 2 2344555444
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
..++....+. ||.+|++++.. ++.. .+ +.|++|+-+||......+.|......|.++|...+..|.||.+.|
T Consensus 393 -~veQ~~atSk-DGT~IPYFiv~-K~~~----~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEf 464 (648)
T COG1505 393 -EVEQFFATSK-DGTRIPYFIVR-KGAK----KD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEF 464 (648)
T ss_pred -eEEEEEEEcC-CCccccEEEEe-cCCc----CC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCCcc
Confidence 4677777887 99999999997 5532 23 679999999998888888998888999999999999999999999
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
|..|+.+......+..++|+.++++.|++++...+++++|.|.|.||.++..+++ +|++|.|+|+..|+.|+.++....
T Consensus 465 Gp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~ 544 (648)
T COG1505 465 GPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLT 544 (648)
T ss_pred CHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccc
Confidence 9999999988777778999999999999999999999999999999999998888 999999999999999988765432
Q ss_pred chhhhhhhhhhcCC------hhhhhhcCccccCCCC-C-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 618 HKFESRYIDNLVGS------EKDYYEKSPINFVDKF-S-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 618 ~~~~~~~~~~~~~~------~~~~~~~sp~~~~~~i-~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
.. ..|+.++ |+ .....++||+.+++.- + +|+||..+..|++|+|.|+++|+.+|++.+.++-+.+--++
T Consensus 545 aG--~sW~~EY-G~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~g 621 (648)
T COG1505 545 AG--SSWIAEY-GNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKG 621 (648)
T ss_pred cc--hhhHhhc-CCCCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCC
Confidence 21 1222222 22 2456789999998873 3 68999999999999999999999999999999888888899
Q ss_pred CccCCCcccH-HHHHHHHHHHHHHHhC
Q 004735 690 QHGFRKAENI-KFTLEQQMVFFARVVG 715 (732)
Q Consensus 690 gH~~~~~~~~-~~~~~~~~~fl~~~l~ 715 (732)
||+-..+... ......++.||.+.|+
T Consensus 622 GH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 622 GHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred cccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 9986544332 5566678889988874
No 8
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-24 Score=226.07 Aligned_cols=487 Identities=18% Similarity=0.175 Sum_probs=317.1
Q ss_pred eceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC--CCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 194 ADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 194 ~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~--~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
...+|-- ||..|.|...+.... .+.||...+.+.+..++...+.. +.+...-..+-+| +..+.+....-.
T Consensus 185 ~y~~w~~~dg~~l~~~t~~~~~r----~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~-~~~i~si~~t~s-- 257 (712)
T KOG2237|consen 185 SYLAWAKQDGEDLLYGTEDENNR----PHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSG-FYTINSISETCS-- 257 (712)
T ss_pred EeeeecccCCceeeeeeeccccC----cceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCc-eEEEEEeeccCC--
Confidence 3344655 777777766655444 38899988876532112222222 2223333445444 444555444322
Q ss_pred CccEEEEEEecC--CCcee-eeEEecCCCCCccccCcCc-eeCCCCc-EEEEEeccCCeeeEEEEeccCC---eEEEecc
Q 004735 271 DKAELWVGYISE--NGDVY-KRVCVAGFDPTIVESPTEP-KWSSKGE-LFFVTDRKNGFWNLHKWIESNN---EVLAIYS 342 (732)
Q Consensus 271 ~~~~l~v~d~~~--~g~~~-~~~~~~~~~~~~~~~~~~~-~wspDg~-l~~~~~~~~g~~~l~~~d~~~g---~~~~l~~ 342 (732)
....+|.+|+.. +|-.. -+....+-+ -.+..- ....++. ++|.++.......+.+.+.... +.+.+..
T Consensus 258 ~~~~vf~~d~~~~~~gl~~~~~~~v~~v~----~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~~ 333 (712)
T KOG2237|consen 258 PVNKVFLCDLSSPSDGLELLILPRVKGVD----CFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVFA 333 (712)
T ss_pred ccceEEEEecccccCCcchheeeccchhh----hhhhhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceeec
Confidence 234688888762 12110 011111111 111111 3445667 7888877444556667665443 2223332
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE--EEECCCCceEEeccCCCceEEe--eEeCCEEEEEEe
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG--ILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGA 418 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly--~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~ 418 (732)
+...+ -..|. .+. +++.+++....+- .+|- +.-+++..++.+..+.+++... ......+.|..+
T Consensus 334 e~~~~-vl~~~------~~~----~~~~ll~~~~~~l-~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~s 401 (712)
T KOG2237|consen 334 EHEKD-VLEDV------DMV----NDNLLLVCYMSDL-KHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFS 401 (712)
T ss_pred ccchh-hhhhh------hhh----cCceEEEEEecCc-hhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEe
Confidence 21111 11121 122 5566666655433 2222 2224566677787777776655 345677889999
Q ss_pred CCCCCcEEEEEEcCCCcceeeeeEEEecCCC--CCccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCC
Q 004735 419 SGVEPSSVAKVTLDDHKLKAVDFKVVWSSSP--DTLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPP 496 (732)
Q Consensus 419 ~~~~~~~ly~~dl~~~~~~~lt~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P 496 (732)
++-.|..||.+|+..++.+ ..++.... .+.++.+.+ +.+++.+++. ||..|+.++..-+... ..+++|
T Consensus 402 S~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P 471 (712)
T KOG2237|consen 402 SFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVERIEVSSK-DGTKVPMFIVYKKDIK----LDGSKP 471 (712)
T ss_pred ccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEEEEEecC-CCCccceEEEEechhh----hcCCCc
Confidence 9999999999999998652 12233221 234444433 5788999998 9999999998854422 256789
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
++|+.||+.+-.....|......|..+|++....|.||.|++|..|+..+...-....++|++++++||++++.+.++|+
T Consensus 472 ~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL 551 (712)
T KOG2237|consen 472 LLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKL 551 (712)
T ss_pred eEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccce
Confidence 99999999888888888877777778999999999999999999999988776667789999999999999999999999
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc--hhhhhhhhhhcCC---hhhhhhcCccccCCCCC--
Q 004735 577 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH--KFESRYIDNLVGS---EKDYYEKSPINFVDKFS-- 648 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~sp~~~~~~i~-- 648 (732)
++.|.|.||.++..++. +|++|+|+++..|+.|+......+. .+...| .-+++ .+.+...+|+...++++
T Consensus 552 ~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~--ee~g~p~~~~~~~~i~~y~pv~~i~~q 629 (712)
T KOG2237|consen 552 AIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDY--EEWGNPEDFEDLIKISPYSPVDNIKKQ 629 (712)
T ss_pred eEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhh--cccCChhhhhhhheecccCccCCCchh
Confidence 99999999999998888 9999999999999999876543221 111111 11222 23444555555554443
Q ss_pred --CC-EEEEEeCCCCccChHHHHHHHHHHHhCC-------CCEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHHhC
Q 004735 649 --CP-IILFQGLEDKVVPPDQARKIYKALKENG-------LPVALVEYEGEQHGFRKAE-NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 649 --~P-~Lii~G~~D~~v~~~~~~~~~~~l~~~g-------~~~~~~~~~~~gH~~~~~~-~~~~~~~~~~~fl~~~l~ 715 (732)
-| +||..+.+|.+|++.++.++.++|+..- .++-+.+..++||+...+. ...+......+||.+.+.
T Consensus 630 ~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 630 VQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLN 707 (712)
T ss_pred ccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 34 8999999999999999999999998751 3578899999999764432 223344567888888886
No 9
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=2.2e-23 Score=224.34 Aligned_cols=249 Identities=16% Similarity=0.156 Sum_probs=181.8
Q ss_pred CCEEEEEeCC--------CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCE--EEEEEeccCCCCCCceeEE
Q 004735 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 154 ~~~i~f~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~--l~~~~~~~~~~~~~~~~~l 223 (732)
+.+|+|+... ..+||++|.++ +.+++||.. ......|+|||||++ ++|++...+ ..+|
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG--~~~~~lt~~----~~~~~sP~wSPDG~~~~~~y~S~~~g------~~~I 213 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDG--QNLRPLTQE----HSLSITPTWMHIGSGFPYLYVSYKLG------VPKI 213 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCC--CCceEcccC----CCCcccceEccCCCceEEEEEEccCC------CceE
Confidence 6788888643 23899999998 889999986 233468999999987 455655432 3699
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEE--EecCCCceee-eEEecCCCCCcc
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDVYK-RVCVAGFDPTIV 300 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~--d~~~~g~~~~-~~~~~~~~~~~~ 300 (732)
|++++++|+ .++|+...+....|+|||||++|+|++... + ..++|++ +++ +|.... ..+..+..
T Consensus 214 ~~~~l~~g~---~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-g----~~di~~~~~~~~-~g~~g~~~~lt~~~~---- 280 (428)
T PRK01029 214 FLGSLENPA---GKKILALQGNQLMPTFSPRKKLLAFISDRY-G----NPDLFIQSFSLE-TGAIGKPRRLLNEAF---- 280 (428)
T ss_pred EEEECCCCC---ceEeecCCCCccceEECCCCCEEEEEECCC-C----CcceeEEEeecc-cCCCCcceEeecCCC----
Confidence 999999998 888987666666899999999999998332 2 3357775 444 322111 23333321
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEecc--CCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~--~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
.....|.|||||+ |+|.+++ .|..+||+++++ +++.++++........|.|++ ||+.|+|.+..
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP------------DG~~Laf~~~~ 347 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP------------DGKKIAFCSVI 347 (428)
T ss_pred CCcCCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCccceeECC------------CCCEEEEEEcC
Confidence 2346799999999 9999887 777899999875 355777876555556788987 89999999888
Q ss_pred CCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
.+..+||++++++++.++|+.....+... ..++++.+++.+...+...||++|+++++.++|+
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 88889999999999999998764443333 3444444444455556678999999999877665
No 10
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.1e-22 Score=216.49 Aligned_cols=245 Identities=14% Similarity=0.140 Sum_probs=184.4
Q ss_pred CEEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 155 ~~i~f~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
.+|+|+.... .+||++|.++ ...++++.+ ......|+|||||++|+|+....+ ..+||+++++
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~~~~p~wSPDG~~la~~s~~~g------~~~i~i~dl~ 231 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA 231 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCC--CCCEEeecC----CCceeeeEEcCCCCEEEEEEecCC------CcEEEEEECC
Confidence 5787876432 2899999997 778889876 345578999999999999875332 2689999999
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+|+ .++|+...+....|.|||||++|+|+.... ...+||++|++ +|+.+. +.... .....+.|+
T Consensus 232 ~G~---~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~-tg~~~~---lt~~~----~~~~~~~wS 295 (429)
T PRK03629 232 NGA---VRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLA-SGQIRQ---VTDGR----SNNTEPTWF 295 (429)
T ss_pred CCC---eEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECC-CCCEEE---ccCCC----CCcCceEEC
Confidence 998 888886666667899999999999986432 24569999998 776632 23332 445789999
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|||+ |+|.+++ .+..+||++++++++.++++........+.|++ +|+.|++.+...+..+||++++
T Consensus 296 PDG~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------DG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 296 PDSQNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEEccCCCceEEEEEC
Confidence 9999 9999987 677899999999998888875433344566776 8899999888778889999999
Q ss_pred CCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
++++.+.|+...........++++.+++.+.......|++++++++..++|+
T Consensus 363 ~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 363 ATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 9999999986532222223455555555555555667999999887765553
No 11
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=4.2e-22 Score=216.94 Aligned_cols=245 Identities=15% Similarity=0.206 Sum_probs=185.0
Q ss_pred CCEEEEEeCCCC------eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 154 GDTVIFSNYKDQ------RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 154 ~~~i~f~~~~~~------~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..+|+|+....+ +||++|.++ ..+++||.. ......|+|||||++|+|+....+ ..+||++|
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~v~~p~wSpDG~~lay~s~~~g------~~~i~~~d 232 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG--ANVRYLTDG----SSLVLTPRFSPNRQEITYMSYANG------RPRVYLLD 232 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC--CCcEEEecC----CCCeEeeEECCCCCEEEEEEecCC------CCEEEEEE
Confidence 458888865433 899999987 788999976 334577899999999999876432 26899999
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
+.+++ .++++...+....|+|||||++|+|..... ...+||++|++ +|+.+. +.... .....+.
T Consensus 233 l~~g~---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~~---Lt~~~----~~~~~~~ 296 (435)
T PRK05137 233 LETGQ---RELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLR-SGTTTR---LTDSP----AIDTSPS 296 (435)
T ss_pred CCCCc---EEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECC-CCceEE---ccCCC----CccCcee
Confidence 99998 788886666667899999999999986332 24679999998 676532 33332 3456799
Q ss_pred eCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 308 WSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 308 wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
|+|||+ |+|.+++ .|..+||++|+++++.++|+........+.|++ +|+.|++.+...+..+|+++
T Consensus 297 ~spDG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp------------dG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 297 YSPDGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP------------RGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EcCCCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeEECC------------CCCEEEEEEcCCCceEEEEE
Confidence 999999 9999887 778899999999999999986554556678887 88999998877777899999
Q ss_pred ECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCC--cEEEEEEcCCCcceeee
Q 004735 387 DDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 387 ~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~--~~ly~~dl~~~~~~~lt 440 (732)
+++++..+.++.+. .+..+ +.+++.++|........ ..||++|+++++.++|+
T Consensus 364 d~~~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 364 KPDGSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 99888888887653 23333 44455555555433332 57999999888765443
No 12
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=7e-22 Score=211.08 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=172.0
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCE-EEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~-l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
.+||++|.++ ..+++++.. . ....|.|||||++ ++|+....+ ..+||++|+.+|+ .++|+...
T Consensus 169 ~~l~~~d~dg--~~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~------~~~Iyv~dl~tg~---~~~lt~~~ 232 (419)
T PRK04043 169 SNIVLADYTL--TYQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGER------KPTLYKYNLYTGK---KEKIASSQ 232 (419)
T ss_pred ceEEEECCCC--CceeEEccC----C-CeEeEEECCCCCcEEEEEEccCC------CCEEEEEECCCCc---EEEEecCC
Confidence 4899999997 678888876 3 3457899999997 455444321 2599999999999 89998766
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
+....|.|||||++|+|..... ...+||++|++ +|+.+++ +... .....+.|+|||+ |+|++++ .
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~-~g~~~~L---T~~~----~~d~~p~~SPDG~~I~F~Sdr-~ 298 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTN-TKTLTQI---TNYP----GIDVNGNFVEDDKRIVFVSDR-L 298 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccC-----CCcEEEEEECC-CCcEEEc---ccCC----CccCccEECCCCCEEEEEECC-C
Confidence 6667799999999999987432 35789999998 7766433 2222 2345789999999 9999998 7
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC------CEEEEEEEECCCCceEEe
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLL 396 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~------g~~~ly~~~~~~~~~~~l 396 (732)
|..+||++|+++|+.++++.... ..+.|++ +|+.|++++... +..+||+++++++..++|
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SP------------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHGK--NNSSVST------------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL 364 (419)
T ss_pred CCceEEEEECCCCCeEeCccCCC--cCceECC------------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence 88899999999999988885321 1357776 899999888654 447899999999999999
Q ss_pred ccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 397 DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 397 t~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
|..........+++++.+++.+.......|+.+++++....+|
T Consensus 365 T~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 365 TANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9864332222344444444445556666799999988765444
No 13
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.1e-21 Score=213.16 Aligned_cols=243 Identities=16% Similarity=0.172 Sum_probs=180.5
Q ss_pred EEEEEeCCC-----CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 156 TVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 156 ~i~f~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
+|+|+.... .+||++|.++ ...++|+.. ......+.|||||++|+|+....+ ..+||++|+.+
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG--~~~~~l~~~----~~~~~~p~wSPDG~~La~~s~~~g------~~~L~~~dl~t 251 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDG--YNEQMLLRS----PEPLMSPAWSPDGRKLAYVSFENR------KAEIFVQDIYT 251 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCC--CCceEeecC----CCcccCceECCCCCEEEEEEecCC------CcEEEEEECCC
Confidence 676664432 2799999987 678888876 345578999999999999876432 36899999999
Q ss_pred CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 231 QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 231 ~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
++ .++++........|.|||||++|+|+.... ...+||++|++ +|+.+.+ .... .....+.|+|
T Consensus 252 g~---~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~-tg~~~~l---t~~~----~~~~~p~wSp 315 (448)
T PRK04792 252 QV---REKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIA-TKALTRI---TRHR----AIDTEPSWHP 315 (448)
T ss_pred CC---eEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECC-CCCeEEC---ccCC----CCccceEECC
Confidence 98 788886665566899999999999986333 34679999998 7766333 2222 3456799999
Q ss_pred CCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 311 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
||+ |+|.+++ .+..+||++|+++++.++|+........+.|++ +++.|++.+...+..+||+++++
T Consensus 316 DG~~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp------------DG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 316 DGKSLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP------------DGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CCCEEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCeeECC------------CCCEEEEEEecCCceEEEEEECC
Confidence 999 9998887 777899999999999888874332334567776 88899998887888899999999
Q ss_pred CCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 390 GHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 390 ~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+++.+.|+....+......++++.+++.+...+...||+++++++..++|
T Consensus 383 ~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 383 TGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred CCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 99999888654332222334444445555555667799999877765444
No 14
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.3e-21 Score=210.75 Aligned_cols=263 Identities=14% Similarity=0.238 Sum_probs=187.4
Q ss_pred CceEEcCCCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCE--EEEEeCCCC-
Q 004735 92 GGTAVDGHGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT--VIFSNYKDQ- 165 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--i~f~~~~~~- 165 (732)
+.+... +.++.|+..+.+. ..+..||..+.++ +.++.++...... .-..|++++.+ ++|+...++
T Consensus 140 g~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~dG-~~~~~lt~~~~~~-------~sP~wSPDG~~~~~~y~S~~~g~ 210 (428)
T PRK01029 140 GVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYDG-QNLRPLTQEHSLS-------ITPTWMHIGSGFPYLYVSYKLGV 210 (428)
T ss_pred CCCccc-cCEEEEEEeeCCcccccccceEEEEcCCC-CCceEcccCCCCc-------ccceEccCCCceEEEEEEccCCC
Confidence 456666 8889998765332 2356888887763 3677776543111 12346666655 556665543
Q ss_pred -eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE--EcCC---CCccccEEc
Q 004735 166 -RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI--ALNG---QNIQEPKVL 239 (732)
Q Consensus 166 -~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~--d~~~---~~~~~~~~l 239 (732)
+||++++++ ++.++|+...+ ....|+|||||++|+|+.+..+ ..+||+. ++++ ++ ++++
T Consensus 211 ~~I~~~~l~~--g~~~~lt~~~g----~~~~p~wSPDG~~Laf~s~~~g------~~di~~~~~~~~~g~~g~---~~~l 275 (428)
T PRK01029 211 PKIFLGSLEN--PAGKKILALQG----NQLMPTFSPRKKLLAFISDRYG------NPDLFIQSFSLETGAIGK---PRRL 275 (428)
T ss_pred ceEEEEECCC--CCceEeecCCC----CccceEECCCCCEEEEEECCCC------CcceeEEEeecccCCCCc---ceEe
Confidence 899999998 88899987532 2245899999999999876432 1356664 5554 44 6788
Q ss_pred ccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEE
Q 004735 240 VSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 317 (732)
Q Consensus 240 t~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~ 317 (732)
+.+. .....|.|||||++|+|++.. .+ ..+||+++++..+.. .+.+.... .....|.|||||+ |+|.
T Consensus 276 t~~~~~~~~~p~wSPDG~~Laf~s~~-~g----~~~ly~~~~~~~g~~--~~~lt~~~----~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 276 LNEAFGTQGNPSFSPDGTRLVFVSNK-DG----RPRIYIMQIDPEGQS--PRLLTKKY----RNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred ecCCCCCcCCeEECCCCCEEEEEECC-CC----CceEEEEECcccccc--eEEeccCC----CCccceeECCCCCEEEEE
Confidence 8653 445689999999999999843 22 457999988622321 23344333 4457899999999 9988
Q ss_pred EeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+.. .|..+|+++|+++++.++|+........+.|++ |++.|+|++...+...||++++++++.++|+
T Consensus 345 ~~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp------------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 345 SVI-KGVRQICVYDLATGRDYQLTTSPENKESPSWAI------------DSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred EcC-CCCcEEEEEECCCCCeEEccCCCCCccceEECC------------CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 877 677899999999999999986544556788886 8889999988888889999999999999998
Q ss_pred cCCCc
Q 004735 398 IPFTD 402 (732)
Q Consensus 398 ~~~~~ 402 (732)
.....
T Consensus 412 ~~~g~ 416 (428)
T PRK01029 412 IGSGE 416 (428)
T ss_pred cCCCc
Confidence 65443
No 15
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=3.4e-21 Score=210.25 Aligned_cols=244 Identities=15% Similarity=0.209 Sum_probs=182.0
Q ss_pred CEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 155 ~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.+|+|+.... .+|+++|.++ +.+++++.. ......+.|||||++|+|+..+.. ..+||++++
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~wSpDG~~la~~s~~~~------~~~l~~~~l 230 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDG--ARAVTLLQS----REPILSPRWSPDGKRIAYVSFEQK------RPRIFVQNL 230 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCC--CCceEEecC----CCceeeeeECCCCCEEEEEEcCCC------CCEEEEEEC
Confidence 4677765322 1699999987 778888765 344577899999999999876432 358999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
++++ .++++...+....|+|||||++|+|..... +..+||++|++ +|+.+. +.... .....+.|
T Consensus 231 ~~g~---~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~~---lt~~~----~~~~~~~~ 294 (430)
T PRK00178 231 DTGR---REQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLA-SRQLSR---VTNHP----AIDTEPFW 294 (430)
T ss_pred CCCC---EEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECC-CCCeEE---cccCC----CCcCCeEE
Confidence 9998 888886666666799999999999987433 24679999998 776533 33332 34567899
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |+|.+++ .|..+||++++.+++.++++........+.|++ +++.|++.+..++..+||+++
T Consensus 295 spDg~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------dg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 295 GKDGRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA------------DGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccceEECC------------CCCEEEEEEccCCceEEEEEE
Confidence 99999 9999887 778899999999999888874433334566776 889999998877778899999
Q ss_pred CCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 388 DFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+++++.+.|+..........+++++.+++.+...+...||.++++++..++|
T Consensus 362 l~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 362 LQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 9999999998754333333444555666666566667799999987664443
No 16
>PRK13604 luxD acyl transferase; Provisional
Probab=99.89 E-value=9.1e-22 Score=195.73 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=154.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCC-CCCChhh
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREF 542 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~ 542 (732)
..+.+. +|..+.||+..|.+.. ..+.++||++||..... ..+...+.+|+++||+|+.+|+||+ +.++..+
T Consensus 12 ~~~~~~-dG~~L~Gwl~~P~~~~-----~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~ 83 (307)
T PRK13604 12 HVICLE-NGQSIRVWETLPKENS-----PKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTI 83 (307)
T ss_pred heEEcC-CCCEEEEEEEcCcccC-----CCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcc
Confidence 445666 8999999999997421 46679999999974432 3467789999999999999999876 4444443
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchh--
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF-- 620 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-- 620 (732)
.+... . ....|+.++++|+.++ +.++|+|+||||||.+++.++..+ .++++|+.+|+.++..+......+
T Consensus 84 ~~~t~-s---~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~-~v~~lI~~sp~~~l~d~l~~~~~~~~ 155 (307)
T PRK13604 84 DEFTM-S---IGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI-DLSFLITAVGVVNLRDTLERALGYDY 155 (307)
T ss_pred ccCcc-c---ccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC-CCCEEEEcCCcccHHHHHHHhhhccc
Confidence 32211 1 1278999999999886 346899999999999987666644 399999999999977554421111
Q ss_pred ---hh----h---hh------hhhcCCh---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 621 ---ES----R---YI------DNLVGSE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 621 ---~~----~---~~------~~~~~~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
.. . +. ..++.+- ..+...+|+..+++++.|+|++||++|..||++++++++++++. .+.
T Consensus 156 ~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~k 233 (307)
T PRK13604 156 LSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQC 233 (307)
T ss_pred ccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCc
Confidence 00 0 00 0000000 01123455677888899999999999999999999999998764 366
Q ss_pred EEEEeCCCCccCCC
Q 004735 682 ALVEYEGEQHGFRK 695 (732)
Q Consensus 682 ~~~~~~~~gH~~~~ 695 (732)
++++++|+.|.+..
T Consensus 234 kl~~i~Ga~H~l~~ 247 (307)
T PRK13604 234 KLYSLIGSSHDLGE 247 (307)
T ss_pred EEEEeCCCccccCc
Confidence 99999999999864
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=5.6e-21 Score=207.07 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=179.6
Q ss_pred CEEEEEeCCC--CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.+|+|+.... .+||++|.++ ..+++++.. ......++|||||++|+|+..... ..+||++|+++++
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG--~~~~~l~~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~I~~~dl~~g~ 231 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADG--QNAQSALSS----PEPIISPAWSPDGTKLAYVSFESK------KPVVYVHDLATGR 231 (427)
T ss_pred cEEEEEEccCCccEEEEECCCC--CCceEeccC----CCCcccceEcCCCCEEEEEEccCC------CcEEEEEECCCCC
Confidence 5788876443 3899999986 677888765 334578899999999999875322 2589999999998
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.++++...+....|.|||||++|+|....+ +..+||++|++ +++.+ .+.... .....+.|+|||
T Consensus 232 ---~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~---~lt~~~----~~~~~~~wSpDG 295 (427)
T PRK02889 232 ---RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNAD-GSGLR---RLTQSS----GIDTEPFFSPDG 295 (427)
T ss_pred ---EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECC-CCCcE---ECCCCC----CCCcCeEEcCCC
Confidence 788876556667899999999999976333 24679999987 66543 233332 344678999999
Q ss_pred c-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
+ |+|.+++ .|..+||.++.++++.++++........+.|++ +|+.|++.+...+..+||+++++++
T Consensus 296 ~~l~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 296 RSIYFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP------------DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CEEEEEecC-CCCcEEEEEECCCCceEEEecCCCCcCceEECC------------CCCEEEEEEccCCcEEEEEEECCCC
Confidence 9 9998887 678899999998888888874333334577776 8999999888777789999999999
Q ss_pred ceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceee
Q 004735 392 SLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 439 (732)
Q Consensus 392 ~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~l 439 (732)
+.++++...........++++.+++.+...+...||.+++++...++|
T Consensus 363 ~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 363 QVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred CeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEe
Confidence 999998653322222444555555555556667799999876554333
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.3e-21 Score=208.68 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=181.6
Q ss_pred CEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 155 ~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.+|+|+.... .+||++|.++ ..+++|+.. ......++|||||++|+|++.... ..+||++|+
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g--~~~~~lt~~----~~~v~~p~wSpDg~~la~~s~~~~------~~~l~~~dl 235 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDG--YNPQTILRS----AEPILSPAWSPDGKKLAYVSFERG------RSAIYVQDL 235 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCC--CCceEeecC----CCccccccCCCCCCEEEEEecCCC------CcEEEEEEC
Confidence 4677765321 2699999986 778899876 334578899999999999875432 368999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
++++ .++++...+....|+|||||++|+|....+ +..+||++|++ +|+.+. +.... .....+.|
T Consensus 236 ~~g~---~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~-~g~~~~---lt~~~----~~~~~~~~ 299 (433)
T PRK04922 236 ATGQ---RELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLG-SRQLTR---LTNHF----GIDTEPTW 299 (433)
T ss_pred CCCC---EEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECC-CCCeEE---CccCC----CCccceEE
Confidence 9988 778876555566899999999999986433 24679999998 776533 23322 33457899
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |+|.+++ .|..+||.+++++++.++++........+.|++ +++.|++.+..++..+|++++
T Consensus 300 spDG~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~~~~~~~~~I~v~d 366 (433)
T PRK04922 300 APDGKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNARASVSP------------DGKKIAMVHGSGGQYRIAVMD 366 (433)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEECCCCceeEEEEE
Confidence 99999 9999887 777899999999998888874433334577776 889999987766778999999
Q ss_pred CCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 388 DFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+++++.+.|+.+.........++++.+++.+.......||.++++++..++|+
T Consensus 367 ~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 367 LSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 99999999987644332224445555555555556678999999877655443
No 19
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2.1e-20 Score=199.76 Aligned_cols=252 Identities=10% Similarity=0.052 Sum_probs=181.1
Q ss_pred EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCE-EEEEeCC--CCeEEEEe
Q 004735 95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHS 171 (732)
Q Consensus 95 ~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~-i~f~~~~--~~~l~~~d 171 (732)
.|. .+.+|++.... ..++.|+..+.++ ..++.++... . . -...|++++++ ++|+... ..+||++|
T Consensus 152 ~f~-~r~~~v~~~~~--~~~~~l~~~d~dg-~~~~~~~~~~--~--~----~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 152 DWM-KRKVVFSKYTG--PKKSNIVLADYTL-TYQKVIVKGG--L--N----IFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred Cce-eeEEEEEEccC--CCcceEEEECCCC-CceeEEccCC--C--e----EeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 455 56666665221 1356788887762 2344444321 0 0 02345666665 6766554 35899999
Q ss_pred CCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceecccc
Q 004735 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRM 251 (732)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~ 251 (732)
+.+ ++.++|+... .....+.|||||++|+|+....+ ..+||++++++++ .++||........|.|
T Consensus 220 l~t--g~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~ 284 (419)
T PRK04043 220 LYT--GKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKT---LTQITNYPGIDVNGNF 284 (419)
T ss_pred CCC--CcEEEEecCC----CcEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCc---EEEcccCCCccCccEE
Confidence 998 8999998652 22245779999999999876432 3799999999998 8999987766678999
Q ss_pred CCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC-----Cee
Q 004735 252 DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFW 325 (732)
Q Consensus 252 SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~-----g~~ 325 (732)
||||++|+|++. +. +..+||++|++ +|+.+++. ... .. .+.|||||+ |+|++.... +..
T Consensus 285 SPDG~~I~F~Sd-r~----g~~~Iy~~dl~-~g~~~rlt--~~g-----~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 285 VEDDKRIVFVSD-RL----GYPNIFMKKLN-SGSVEQVV--FHG-----KN--NSSVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred CCCCCEEEEEEC-CC----CCceEEEEECC-CCCeEeCc--cCC-----Cc--CceECCCCCEEEEEEcCCCcccCCCCc
Confidence 999999999984 33 34679999998 77764332 222 11 359999999 888876521 336
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+|+++|+++++.+.|+... ....|.|+| ||+.|+|.+...+...|+.+++++...+.|.....
T Consensus 350 ~I~v~d~~~g~~~~LT~~~-~~~~p~~SP------------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 350 NLYLISTNSDYIRRLTANG-VNQFPRFSS------------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred EEEEEECCCCCeEECCCCC-CcCCeEECC------------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 8999999999999998653 334688887 89999999988888899999999887777765443
No 20
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=3.5e-20 Score=200.54 Aligned_cols=253 Identities=11% Similarity=0.075 Sum_probs=185.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC--CCeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~--~~~l~~~d~~~~~ 176 (732)
.++++|+..+.++..++.||..+.+++ ..+.++.... ......|+++++.|+|.... ..+||++++.+
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~-~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-- 232 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-- 232 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCC-CCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 467888776544444678888876632 4455554320 11234566777789887643 34899999988
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++ .++++.+......|.|||||+
T Consensus 233 G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 233 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCC---EEEccCCCCCcCceEECCCCC
Confidence 8888888652 22356899999999999865332 2579999999998 889987776677899999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+. +.+ ..+||++|++ +|+.+.+ .... .....+.|||||+ |+|.+.. .+..+|+.+|++++
T Consensus 300 ~I~f~s~-~~g----~~~Iy~~d~~-~g~~~~l---t~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g 365 (429)
T PRK03629 300 NLAYTSD-QAG----RPQVYKVNIN-GGAPQRI---TWEG----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG 365 (429)
T ss_pred EEEEEeC-CCC----CceEEEEECC-CCCeEEe---ecCC----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCC
Confidence 9999983 322 3579999998 6765333 2222 3446799999999 8887766 66778999999999
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+.+.|+.. .....|.|++ ||+.|++.+.+.+...||+++++++..+.|+....
T Consensus 366 ~~~~Lt~~-~~~~~p~~Sp------------DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 366 GVQVLTDT-FLDETPSIAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred CeEEeCCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence 99888843 2334678886 89999999987777889999999888888875443
No 21
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=8.1e-20 Score=198.46 Aligned_cols=253 Identities=12% Similarity=0.119 Sum_probs=182.5
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~ 176 (732)
..++.|+..+......+.|+..+.++ +..+.++..... .....|++++++|+|....+ .+||++|+.+
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~~-------~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-- 251 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDG-YNEQMLLRSPEP-------LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-- 251 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCC-CCceEeecCCCc-------ccCceECCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 45677766544333356777766552 244555443211 11235666777899986544 3799999998
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
++.++++...+ ....+.|||||++|+|+....+ ..+||++|+++++ .++++........|.|||||+
T Consensus 252 g~~~~lt~~~g----~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~ 318 (448)
T PRK04792 252 QVREKVTSFPG----INGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGK 318 (448)
T ss_pred CCeEEecCCCC----CcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCC---eEECccCCCCccceEECCCCC
Confidence 78888886521 2246899999999988765432 3689999999998 889987666667899999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+... + ..+||++|++ +|+.+.++ ... .....+.|+|||+ |+|.+.. .+..+|+++|++++
T Consensus 319 ~I~f~s~~~-g----~~~Iy~~dl~-~g~~~~Lt--~~g-----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g 384 (448)
T PRK04792 319 SLIFTSERG-G----KPQIYRVNLA-SGKVSRLT--FEG-----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG 384 (448)
T ss_pred EEEEEECCC-C----CceEEEEECC-CCCEEEEe--cCC-----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 999987332 2 4579999998 77764332 222 2335689999999 8887776 67789999999999
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+.+.|+... ....|.|++ +++.|+|++..++...||+++.+++..+.++.+..
T Consensus 385 ~~~~lt~~~-~d~~ps~sp------------dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 385 AMQVLTSTR-LDESPSVAP------------NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred CeEEccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCCC
Confidence 988887543 234677876 89999999998888899999998888888876543
No 22
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=5.3e-20 Score=200.48 Aligned_cols=250 Identities=14% Similarity=0.170 Sum_probs=182.2
Q ss_pred CCcEEEEeecCCC-CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC--CCeEEEEeCCCC
Q 004735 99 HGRLIWLESRPTE-AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK--DQRLYKHSIDSK 175 (732)
Q Consensus 99 g~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~--~~~l~~~d~~~~ 175 (732)
..+++|+...... ..+..||..+.++ +..+.++.....+ ....|++++++|+|.... +.+||++|+.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~~v-------~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~- 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG-ANVRYLTDGSSLV-------LTPRFSPNRQEITYMSYANGRPRVYLLDLET- 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC-CCcEEEecCCCCe-------EeeEECCCCCEEEEEEecCCCCEEEEEECCC-
Confidence 6788888754321 1266788887653 3555565433111 123456667789998654 34899999998
Q ss_pred CCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCC
Q 004735 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (732)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG 255 (732)
++.++++... .....++|||||++|+|+....+ ..+||++|+++++ .++|+........|.|||||
T Consensus 236 -g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 236 -GQRELVGNFP----GMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred -CcEEEeecCC----CcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCc---eEEccCCCCccCceeEcCCC
Confidence 8888888652 23357889999999988865432 3689999999998 89999877667789999999
Q ss_pred CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 256 ~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++|+|.+. +.+ ..+||++|++ +++.+.+. .+ . .....+.|||||+ |+|.+.. .+..+|+++++++
T Consensus 302 ~~i~f~s~-~~g----~~~Iy~~d~~-g~~~~~lt--~~-~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~ 367 (435)
T PRK05137 302 SQIVFESD-RSG----SPQLYVMNAD-GSNPRRIS--FG-G----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDG 367 (435)
T ss_pred CEEEEEEC-CCC----CCeEEEEECC-CCCeEEee--cC-C----CcccCeEECCCCCEEEEEEcC-CCceEEEEEECCC
Confidence 99999873 322 4579999987 66663332 22 2 4456799999999 8887765 6678899999988
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE---EEEEEEECCCCceEEecc
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~---~~ly~~~~~~~~~~~lt~ 398 (732)
+..+.++.. .....+.|++ |++.|+|.+...+. ..||+++++++..+.|+.
T Consensus 368 ~~~~~lt~~-~~~~~p~~sp------------DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 368 SGERILTSG-FLVEGPTWAP------------NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred CceEeccCC-CCCCCCeECC------------CCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 887777643 3456788886 88999998876655 689999999988887764
No 23
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.87 E-value=7.2e-21 Score=200.96 Aligned_cols=245 Identities=18% Similarity=0.187 Sum_probs=176.3
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
+.+|++|+.+ ++.++|+.. ......+.|||||+.|+|+++ ++||+.++.+++ .++||.+..
T Consensus 23 ~~y~i~d~~~--~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~---~~~lT~dg~ 83 (353)
T PF00930_consen 23 GDYYIYDIET--GEITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQ---ETQLTTDGE 83 (353)
T ss_dssp EEEEEEETTT--TEEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSE---EEESES--T
T ss_pred eeEEEEecCC--CceEECcCC----ccccccceeecCCCeeEEEec----------CceEEEECCCCC---eEEeccccc
Confidence 4799999998 888888875 233467889999999999986 799999998888 889985431
Q ss_pred ------------------ceeccccCCCCCeEEEEeccCCC----------------------------CCCCccEEEEE
Q 004735 245 ------------------FYAFPRMDPRGERMAWIEWHHPN----------------------------MPWDKAELWVG 278 (732)
Q Consensus 245 ------------------~~~~p~~SPDG~~la~~~~~~~~----------------------------~~~~~~~l~v~ 278 (732)
......|||||++|||.+.++.. .+....+|+++
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~ 163 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV 163 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence 12345699999999999876542 22234578999
Q ss_pred EecCCCceeeeEEe---cCCCCCccccCcCceeCCCCc-EEEEE-eccCCeeeEEEEeccCCeEEEecccccccCCCcee
Q 004735 279 YISENGDVYKRVCV---AGFDPTIVESPTEPKWSSKGE-LFFVT-DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV 353 (732)
Q Consensus 279 d~~~~g~~~~~~~~---~~~~~~~~~~~~~~~wspDg~-l~~~~-~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~ 353 (732)
|++ +|+..++... ...+ .++..+.|++|++ +++.. ++.+....|.++|+.+++.+.+..+ ....|.
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~----~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e----~~~~Wv 234 (353)
T PF00930_consen 164 DLA-SGKTTELDPPNSLNPQD----YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE----TSDGWV 234 (353)
T ss_dssp ESS-STCCCEE---HHHHTSS----EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE----ESSSSS
T ss_pred ECC-CCcEEEeeeccccCCCc----cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe----cCCcce
Confidence 998 7776444433 2333 7888999999999 66654 5545667788999999888777643 355676
Q ss_pred ecccceeee-eecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe--eEeCCEEEEEEeCCCCC--cEEEE
Q 004735 354 FGINSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEP--SSVAK 428 (732)
Q Consensus 354 ~~~~~~~~~-~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~--~~ly~ 428 (732)
.......|+ + +++.+++.++++|+.|||+++.+++..++||.+.+.|..+ .+++++.+|+.++...| .+||+
T Consensus 235 ~~~~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 235 DVYDPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eeecccccccC---CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 544555554 4 7889999999999999999999999999999999999776 44555555555555444 35999
Q ss_pred EEcC-CCcceeee
Q 004735 429 VTLD-DHKLKAVD 440 (732)
Q Consensus 429 ~dl~-~~~~~~lt 440 (732)
++++ ++++++||
T Consensus 312 v~~~~~~~~~~LT 324 (353)
T PF00930_consen 312 VSLDSGGEPKCLT 324 (353)
T ss_dssp EETTETTEEEESS
T ss_pred EEeCCCCCeEecc
Confidence 9999 88887776
No 24
>PRK10566 esterase; Provisional
Probab=99.86 E-value=2.2e-20 Score=188.50 Aligned_cols=226 Identities=20% Similarity=0.273 Sum_probs=149.2
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC--ChhhHHhhccCCC-
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY--GREFRERLLGRWG- 551 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~--g~~~~~~~~~~~~- 551 (732)
+..+.+.|... .+++.|+||++||++.. ...+...++.|+++||.|+++|+||.+.. +.. .......|.
T Consensus 12 ~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~-~~~~~~~~~~ 83 (249)
T PRK10566 12 IEVLHAFPAGQ-----RDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDE-ARRLNHFWQI 83 (249)
T ss_pred cceEEEcCCCC-----CCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCcc-ccchhhHHHH
Confidence 44455667541 13457999999998544 34566788999999999999999986532 110 000000011
Q ss_pred -cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-chhhhhh---h
Q 004735 552 -IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFESRY---I 625 (732)
Q Consensus 552 -~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~~~---~ 625 (732)
....+|+.++++++.+++.+|.++|+++|||+||++++.++. +|+ +++++.+.+...+..+.... ....... .
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (249)
T PRK10566 84 LLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLARTLFPPLIPETAAQQ 162 (249)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHHHhcccccccccccH
Confidence 123678888899998887789999999999999999999988 665 45554443322211111000 0000000 0
Q ss_pred hhhcCChhhhhhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCcccHHHH
Q 004735 626 DNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAENIKFT 702 (732)
Q Consensus 626 ~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~~~~~ 702 (732)
.........+...++...+.++ ++|+|++||++|.++|+.++++++++++.+|. +++++++++++|.+. .+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~~ 237 (249)
T PRK10566 163 AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PEA 237 (249)
T ss_pred HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HHH
Confidence 0000000122334455556666 69999999999999999999999999999886 478999999999874 357
Q ss_pred HHHHHHHHHHHh
Q 004735 703 LEQQMVFFARVV 714 (732)
Q Consensus 703 ~~~~~~fl~~~l 714 (732)
++.+++||+++|
T Consensus 238 ~~~~~~fl~~~~ 249 (249)
T PRK10566 238 LDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHhhC
Confidence 889999999875
No 25
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2e-19 Score=195.72 Aligned_cols=253 Identities=14% Similarity=0.142 Sum_probs=183.7
Q ss_pred CCcEEEEeecC-CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 004735 99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (732)
Q Consensus 99 g~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~ 175 (732)
+.+++|+.... .+..++.|+..+.+ |+..+.++..... .....|+++++.|+|..... .+||++++++
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~-g~~~~~lt~~~~~-------v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~- 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSD-GYNPQTILRSAEP-------ILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT- 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCC-CCCceEeecCCCc-------cccccCCCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 56788876533 23345678877765 2345556543211 11234666677899987544 3799999987
Q ss_pred CCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCC
Q 004735 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (732)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG 255 (732)
++.++++... .....+.|||||++|+|+....+ ..+||++|+++++ .++++........|.|||||
T Consensus 238 -g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 238 -GQRELVASFR----GINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred -CCEEEeccCC----CCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCC---eEECccCCCCccceEECCCC
Confidence 7888887642 12346889999999988865432 2689999999998 88898766556679999999
Q ss_pred CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 256 ~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++|+|.+ ++.+ ..+||+++++ +|+.+.+. ... .....+.|||||+ |+|.+.. .+..+|+++|+++
T Consensus 304 ~~l~f~s-d~~g----~~~iy~~dl~-~g~~~~lt--~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~ 369 (433)
T PRK04922 304 KSIYFTS-DRGG----RPQIYRVAAS-GGSAERLT--FQG-----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLST 369 (433)
T ss_pred CEEEEEE-CCCC----CceEEEEECC-CCCeEEee--cCC-----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCC
Confidence 9999997 3332 3579999998 67653332 222 3345799999999 8887765 5677999999999
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
++.+.|+... ....|.|++ +++.++|.++..+...||.++++++..++|+.+..
T Consensus 370 g~~~~Lt~~~-~~~~p~~sp------------dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 370 GSVRTLTPGS-LDESPSFAP------------NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred CCeEECCCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEEcccCCC
Confidence 9988887543 334677876 88999999998888999999999888888876543
No 26
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2.5e-19 Score=195.60 Aligned_cols=253 Identities=13% Similarity=0.155 Sum_probs=183.5
Q ss_pred CCcEEEEeec-CCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCC
Q 004735 99 HGRLIWLESR-PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (732)
Q Consensus 99 g~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~ 175 (732)
..++.|+... ..+.+++.|+..+.++ +..+.++..... .....|++++++|+|....+ .+||++++++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~-------~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~- 232 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDG-ARAVTLLQSREP-------ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT- 232 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCC-CCceEEecCCCc-------eeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-
Confidence 4567776543 3345677888877663 344555433201 01224556677899987554 3899999998
Q ss_pred CCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCC
Q 004735 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRG 255 (732)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG 255 (732)
++.++++... .....+.|||||++|+|+....+ ..+||++|+++++ .++|+........|.|||||
T Consensus 233 -g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 233 -GRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred -CCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCC---eEEcccCCCCcCCeEECCCC
Confidence 8888888652 12246899999999998765432 2689999999998 88898776667789999999
Q ss_pred CeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 256 ERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 256 ~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
++|+|.+ ++.+ ..+||+++++ +|+.+.+. .. . .+...+.|||||+ |+|.... .+..+|+++|+++
T Consensus 299 ~~i~f~s-~~~g----~~~iy~~d~~-~g~~~~lt--~~-~----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t 364 (430)
T PRK00178 299 RTLYFTS-DRGG----KPQIYKVNVN-GGRAERVT--FV-G----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR 364 (430)
T ss_pred CEEEEEE-CCCC----CceEEEEECC-CCCEEEee--cC-C----CCccceEECCCCCEEEEEEcc-CCceEEEEEECCC
Confidence 9999987 3332 3579999998 77764332 12 1 3345789999999 8888766 5677899999999
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
++.+.|+... ....|.|++ +|+.++|++.+.+...||.++.+++..+.|+.+..
T Consensus 365 g~~~~lt~~~-~~~~p~~sp------------dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 365 GSVRILTDTS-LDESPSVAP------------NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred CCEEEccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCCC
Confidence 9998888543 334677876 89999999998899999999998877777765443
No 27
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2.6e-19 Score=194.07 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=180.2
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCCC
Q 004735 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDS 177 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~~ 177 (732)
++++|+.. ..++..||..+.+ |...+.++..... .....|+++++.|+|....+ .+||++|+.+ +
T Consensus 164 ~~iayv~~---~~~~~~L~~~D~d-G~~~~~l~~~~~~-------v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--g 230 (427)
T PRK02889 164 TRIAYVIK---TGNRYQLQISDAD-GQNAQSALSSPEP-------IISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--G 230 (427)
T ss_pred cEEEEEEc---cCCccEEEEECCC-CCCceEeccCCCC-------cccceEcCCCCEEEEEEccCCCcEEEEEECCC--C
Confidence 56777653 2355678887765 2244555433211 11235666677899987544 3799999998 7
Q ss_pred CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCe
Q 004735 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGER 257 (732)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~ 257 (732)
+.++++... .....+.|||||++|+|.....+ ..+||++|++++. .++|+........|.|||||++
T Consensus 231 ~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~ 297 (427)
T PRK02889 231 RRRVVANFK----GSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRS 297 (427)
T ss_pred CEEEeecCC----CCccceEECCCCCEEEEEEccCC------CceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCE
Confidence 888887542 12356889999999988765432 3689999999888 8899876666678999999999
Q ss_pred EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe
Q 004735 258 MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 258 la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
|+|++ ++.+ ..+||+++++ +|+.+.+. .. . .+...+.|||||+ |+|.+.. .+..+|+++|+++++
T Consensus 298 l~f~s-~~~g----~~~Iy~~~~~-~g~~~~lt--~~-g----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 298 IYFTS-DRGG----APQIYRMPAS-GGAAQRVT--FT-G----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATGQ 363 (427)
T ss_pred EEEEe-cCCC----CcEEEEEECC-CCceEEEe--cC-C----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCCC
Confidence 99987 3333 4579999987 66553332 12 1 3345789999999 8888776 666789999999999
Q ss_pred EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc
Q 004735 337 VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 402 (732)
Q Consensus 337 ~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~ 402 (732)
.+.++... ....|.|++ +++.|++.++..|...||.++.+++..+.++.+...
T Consensus 364 ~~~lt~~~-~~~~p~~sp------------dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~ 416 (427)
T PRK02889 364 VTALTDTT-RDESPSFAP------------NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGD 416 (427)
T ss_pred eEEccCCC-CccCceECC------------CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCC
Confidence 88887543 335678887 899999999999999999999987777777654443
No 28
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.85 E-value=5.8e-20 Score=193.43 Aligned_cols=243 Identities=18% Similarity=0.224 Sum_probs=162.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+...+... +|.++++..+.|.. .....++||++||.+... .+.+...+..|+++||.|+++|+||.|...
T Consensus 31 ~~~~~~~~~~-dg~~l~~~~~~~~~------~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~ 102 (330)
T PLN02298 31 KGSKSFFTSP-RGLSLFTRSWLPSS------SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGHGRSE 102 (330)
T ss_pred ccccceEEcC-CCCEEEEEEEecCC------CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 3455677776 99999998888754 124568999999984332 344555677789999999999999875432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH----
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR---- 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~---- 614 (732)
.. ......-....+|+.++++++......+..+++|+||||||.+++.++. +|++++++|+.+|........
T Consensus 103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (330)
T PLN02298 103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPW 179 (330)
T ss_pred Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCch
Confidence 11 0000001123788999999998764444568999999999999998887 999999999999865322100
Q ss_pred --hhcchhhhhhhhhh--------cC----Ch--hhhhhcCc----------------------cccCCCCCCCEEEEEe
Q 004735 615 --AETHKFESRYIDNL--------VG----SE--KDYYEKSP----------------------INFVDKFSCPIILFQG 656 (732)
Q Consensus 615 --~~~~~~~~~~~~~~--------~~----~~--~~~~~~sp----------------------~~~~~~i~~P~Lii~G 656 (732)
.....+...+.... +. .. ..+...+| ...+.++++|+|++||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G 259 (330)
T PLN02298 180 PIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHG 259 (330)
T ss_pred HHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEec
Confidence 00000000000000 00 00 00001111 1235678899999999
Q ss_pred CCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cc-cHHHHHHHHHHHHHHHhC
Q 004735 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AE-NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~-~~~~~~~~~~~fl~~~l~ 715 (732)
++|.++|++.++++++.++.. +.+++++++++|.+.. ++ ..+.+.+.+.+|+.++++
T Consensus 260 ~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~ 319 (330)
T PLN02298 260 SADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCT 319 (330)
T ss_pred CCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998887643 4589999999998642 22 345678889999999986
No 29
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.85 E-value=1e-19 Score=185.41 Aligned_cols=242 Identities=18% Similarity=0.192 Sum_probs=162.2
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHH-HHCCCEEEEEcC--CCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNY--GGST 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l-~~~G~~v~~~d~--rG~~ 536 (732)
+.+...+.+...+.++.+.+|.|+... .++.|+|+++||.+.....+......+.+ .+.||.|++||. ||.+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA-----AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc-----CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 345566666556788899999997622 34579999999986544333322223334 457999999997 5543
Q ss_pred CCCh----------hh-HHhhccCCC--cccHHHHHHHHHHHH-hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEE
Q 004735 537 GYGR----------EF-RERLLGRWG--IVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAG 601 (732)
Q Consensus 537 g~g~----------~~-~~~~~~~~~--~~~~~D~~~~i~~l~-~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~ 601 (732)
..+. .+ .+.....+. ......+.+.+..++ ++..+|.++++|+||||||++++.++. +|++++++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 2211 11 110000011 011233334444433 335678899999999999999999998 99999999
Q ss_pred EeecCcCCHHHHHhhcchhhhhhhhhhcC-ChhhhhhcCccccCCC--CCCCEEEEEeCCCCccCh-HHHHHHHHHHHhC
Q 004735 602 ASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPP-DQARKIYKALKEN 677 (732)
Q Consensus 602 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D~~v~~-~~~~~~~~~l~~~ 677 (732)
++.+|+.+.... .+...++...++ +++.+...+|...+.. ...|+++.||++|+.++. .+...+.+.|+++
T Consensus 167 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~ 241 (275)
T TIGR02821 167 SAFAPIVAPSRC-----PWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAA 241 (275)
T ss_pred EEECCccCcccC-----cchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHc
Confidence 999999775321 111122233333 2334444555544433 457999999999999998 6888999999999
Q ss_pred CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 678 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
|+++++.+++|++|+|. .....+...++|+.+++
T Consensus 242 g~~v~~~~~~g~~H~f~---~~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 242 GQALTLRRQAGYDHSYY---FIASFIADHLRHHAERL 275 (275)
T ss_pred CCCeEEEEeCCCCccch---hHHHhHHHHHHHHHhhC
Confidence 99999999999999984 55677888888887653
No 30
>PLN02442 S-formylglutathione hydrolase
Probab=99.85 E-value=5.1e-20 Score=187.82 Aligned_cols=241 Identities=20% Similarity=0.225 Sum_probs=158.9
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCC--
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST-- 536 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~-- 536 (732)
..+.+++.++.-|..+.+.+|.|+.. ++++.|+|+++||++.....+.. ....+.+...|++|+.||..+.+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-----~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~ 91 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-----DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLN 91 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-----cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCC
Confidence 45666777765788899999999731 25678999999997554432221 12345667789999999965322
Q ss_pred ----------CCChh-hHHhhccCCCcc-----cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcce
Q 004735 537 ----------GYGRE-FRERLLGRWGIV-----DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFK 599 (732)
Q Consensus 537 ----------g~g~~-~~~~~~~~~~~~-----~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~ 599 (732)
+++.+ +.+.....|+.. ..+++...++.... .+|.++++|+|+|+||++++.++. +|++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~ 169 (283)
T PLN02442 92 VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYK 169 (283)
T ss_pred CCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEE
Confidence 01111 111111111111 12333333333322 358899999999999999999988 999999
Q ss_pred EEEeecCcCCHHHHHhhcchhhhhhhhhhcC-Chhhhhhc---CccccCCCCCCCEEEEEeCCCCccChH-HHHHHHHHH
Q 004735 600 AGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEK---SPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKAL 674 (732)
Q Consensus 600 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---sp~~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l 674 (732)
++++.+|+.++.... +....+...++ +.+.+.+. +++..+...++|+|++||++|.+++.. ++..+++++
T Consensus 170 ~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 170 SVSAFAPIANPINCP-----WGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred EEEEECCccCcccCc-----hhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHH
Confidence 999999998754211 10111122222 22334434 444555567899999999999999874 578999999
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++.|.+++++++++++|.+. ....+++..+.|..++++
T Consensus 245 ~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 245 KEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864 445566666677766664
No 31
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.84 E-value=2.4e-19 Score=191.79 Aligned_cols=231 Identities=16% Similarity=0.108 Sum_probs=156.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.++++.. +|..++++++.|.. .++.|+||+.||. .+.....+...++.|+++||+|+++|+||.+...
T Consensus 167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~ 237 (414)
T PRK05077 167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSS 237 (414)
T ss_pred ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 3578999986 77799999999974 4567888876664 3322334556778899999999999999865432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-H---HH
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-M---LR 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-~---~~ 614 (732)
.. ... ........++++++.+.+.+|.+||+++|||+||++++.++. +|++++++|+.+|+.+.. . ..
T Consensus 238 ~~---~~~----~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~ 310 (414)
T PRK05077 238 KW---KLT----QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQ 310 (414)
T ss_pred CC---Ccc----ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhh
Confidence 11 000 011223357889999888899999999999999999999988 888999999999886411 0 00
Q ss_pred hhcchhhhhhhhhhcC----Chhhh----hhcCcc--c-cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE
Q 004735 615 AETHKFESRYIDNLVG----SEKDY----YEKSPI--N-FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~----~~~~~----~~~sp~--~-~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (732)
..........+...++ +.+.+ ..++.. . ...++++|+|+++|++|.++|+++++.+.+... +.++
T Consensus 311 ~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l 386 (414)
T PRK05077 311 QQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKL 386 (414)
T ss_pred hhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeE
Confidence 0000000111111111 11111 111111 1 125688999999999999999999987765543 4588
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 684 VEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 684 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+++++. |.+ +...+.+..+.+||+++|
T Consensus 387 ~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 387 LEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 999986 433 467899999999999876
No 32
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.83 E-value=4.6e-20 Score=181.65 Aligned_cols=204 Identities=20% Similarity=0.287 Sum_probs=142.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC-CChhh--HHhhccC--
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREF--RERLLGR-- 549 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g-~g~~~--~~~~~~~-- 549 (732)
+.+++..|++ .++.|.||++|+..+.. ......++.|+++||.|++||+-+..+ ..... .......
T Consensus 1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~ 71 (218)
T PF01738_consen 1 IDAYVARPEG-------GGPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF 71 (218)
T ss_dssp EEEEEEEETT-------SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH
T ss_pred CeEEEEeCCC-------CCCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH
Confidence 4678888976 35789999999963322 445567889999999999999654333 11111 1111110
Q ss_pred --CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhhhhh
Q 004735 550 --WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 627 (732)
Q Consensus 550 --~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 627 (732)
.......|+.+++++|.+++.++.+||+++|+|+||.+++.++...+.++++++.+|.....
T Consensus 72 ~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg~~~~~---------------- 135 (218)
T PF01738_consen 72 APRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYGGSPPP---------------- 135 (218)
T ss_dssp HHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-SSSGG----------------
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcCCCCCC----------------
Confidence 11123678889999999998788999999999999999999998557899999999911100
Q ss_pred hcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc-------ccHH
Q 004735 628 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-------ENIK 700 (732)
Q Consensus 628 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-------~~~~ 700 (732)
.+.....++++|+|+++|++|+.++.+...++.+.|++.|.++++++|+|++|+|..+ +..+
T Consensus 136 -----------~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 136 -----------PPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp -----------GHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred -----------cchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 0112244678999999999999999999999999999999999999999999998543 3466
Q ss_pred HHHHHHHHHHHHHh
Q 004735 701 FTLEQQMVFFARVV 714 (732)
Q Consensus 701 ~~~~~~~~fl~~~l 714 (732)
+.++++++||+++|
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 78889999998876
No 33
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.6e-18 Score=188.09 Aligned_cols=238 Identities=14% Similarity=0.149 Sum_probs=170.4
Q ss_pred CCEEEEEeCC-----CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 154 GDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 154 ~~~i~f~~~~-----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+.+|+|+... +.+||++|.++ ...++|+.. ......++|||||++|+|+..+.. ..+||++|+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg--~~~~~lt~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~i~i~dl 235 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG--FNQFIVNRS----SQPLMSPAWSPDGSKLAYVSFENK------KSQLVVHDL 235 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC--CCceEeccC----CCccccceEcCCCCEEEEEEecCC------CcEEEEEeC
Confidence 4578777543 24899999987 667888875 345578999999999999876432 258999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+++ .++++...+....|+|||||++|+|..... +..+||++|++ +++.+ .+.... .....+.|
T Consensus 236 ~tg~---~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~-~~~~~---~lt~~~----~~~~~~~w 299 (429)
T PRK01742 236 RSGA---RKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGAN-GGTPS---QLTSGA----GNNTEPSW 299 (429)
T ss_pred CCCc---eEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECC-CCCeE---eeccCC----CCcCCEEE
Confidence 9887 777775555556799999999999986333 24569999987 66653 233333 45678999
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
+|||+ |+|.+++ .|..+||.++..++..+.+... . ..+.|++ +++.|++.+. ..++++|
T Consensus 300 SpDG~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~~~-~--~~~~~Sp------------DG~~ia~~~~----~~i~~~D 359 (429)
T PRK01742 300 SPDGQSILFTSDR-SGSPQVYRMSASGGGASLVGGR-G--YSAQISA------------DGKTLVMING----DNVVKQD 359 (429)
T ss_pred CCCCCEEEEEECC-CCCceEEEEECCCCCeEEecCC-C--CCccCCC------------CCCEEEEEcC----CCEEEEE
Confidence 99999 9999887 7888999999888877666422 1 2456776 8888887754 3578889
Q ss_pred CCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 388 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 388 ~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+.+++.+.++.... ...+ ..++++.+++++.......++.++.+++..++|+
T Consensus 360 l~~g~~~~lt~~~~-~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 360 LTSGSTEVLSSTFL-DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCCCCeEEecCCCC-CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 99998888875432 2222 4455666666666555556778887776655543
No 34
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.82 E-value=3.9e-18 Score=186.03 Aligned_cols=243 Identities=17% Similarity=0.198 Sum_probs=174.5
Q ss_pred CCEEEEEeCC----CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 154 GDTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 154 ~~~i~f~~~~----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
+++++|.... ..+||++|.++ +..++|+.. ......+.|||||++|+|+..... ..+||++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~~Spdg~~la~~~~~~~------~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDG--ANPQTITRS----REPILSPAWSPDGQKLAYVSFESG------KPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCC--CCCEEeecC----CCceecccCCCCCCEEEEEEcCCC------CcEEEEEECC
Confidence 4567777543 23799999986 778888865 234567889999999999865332 2689999999
Q ss_pred CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 230 GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 230 ~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
+++ .+.++........++|||||++|+|..... +..+||++++. +++.+.+ .... .....+.|+
T Consensus 223 ~g~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~-~~~~~~l---~~~~----~~~~~~~~s 286 (417)
T TIGR02800 223 TGQ---REKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLD-GKQLTRL---TNGP----GIDTEPSWS 286 (417)
T ss_pred CCC---EEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECC-CCCEEEC---CCCC----CCCCCEEEC
Confidence 987 677765555556799999999999876332 24579999998 6655332 2222 234578999
Q ss_pred CCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|||+ |+|.+++ .+..+||++++.+++.++++........+.|++ +++.|+++....+..+||++++
T Consensus 287 ~dg~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp------------dg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 287 PDGKSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP------------DGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccCeEECC------------CCCEEEEEEccCCceEEEEEeC
Confidence 9999 8888887 677799999999998888875544445667775 8888999887777889999999
Q ss_pred CCCceEEeccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCccee
Q 004735 389 FGHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~ 438 (732)
+++..+.++....... .++.+++.+++ .+...+...+|+++++++..++
T Consensus 354 ~~~~~~~l~~~~~~~~p~~spdg~~l~~-~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 354 DGGGERVLTDTGLDESPSFAPNGRMILY-ATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred CCCCeEEccCCCCCCCceECCCCCEEEE-EEeCCCcEEEEEEECCCceeeE
Confidence 9988888876433222 22344444544 4445555678888877665433
No 35
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.81 E-value=7.5e-19 Score=169.13 Aligned_cols=235 Identities=17% Similarity=0.237 Sum_probs=167.3
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
-.+... +|..+....|.|.+ ..+++.+|+++||+ +....+.+...+..|+..||.|+++|++|.+++..
T Consensus 30 ~~~~n~-rG~~lft~~W~p~~------~~~pr~lv~~~HG~-g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdG--- 98 (313)
T KOG1455|consen 30 SFFTNP-RGAKLFTQSWLPLS------GTEPRGLVFLCHGY-GEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDG--- 98 (313)
T ss_pred eeEEcC-CCCEeEEEecccCC------CCCCceEEEEEcCC-cccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCC---
Confidence 344555 89999999999965 23667899999997 34455778888999999999999999998765321
Q ss_pred HhhccCCCc--ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh----
Q 004735 544 ERLLGRWGI--VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE---- 616 (732)
Q Consensus 544 ~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~---- 616 (732)
...-... .-++|+..-++.+..+........+++||||||.+++.++. +|..+.++|+.+|..-+..-...
T Consensus 99 --l~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v 176 (313)
T KOG1455|consen 99 --LHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPV 176 (313)
T ss_pred --CcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHH
Confidence 1111111 12777888888777665445568999999999999999998 99999999999987633211100
Q ss_pred ------cchhhhhh--------hhhhcCChh--hhhhcCc----------------------cccCCCCCCCEEEEEeCC
Q 004735 617 ------THKFESRY--------IDNLVGSEK--DYYEKSP----------------------INFVDKFSCPIILFQGLE 658 (732)
Q Consensus 617 ------~~~~~~~~--------~~~~~~~~~--~~~~~sp----------------------~~~~~~i~~P~Lii~G~~ 658 (732)
...+...| .+....+++ .....+| ..++.+++.|+||+||++
T Consensus 177 ~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~d 256 (313)
T KOG1455|consen 177 ISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTD 256 (313)
T ss_pred HHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCC
Confidence 00000000 000000111 1112222 234778899999999999
Q ss_pred CCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHH
Q 004735 659 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---KAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 659 D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~ 713 (732)
|.++.+..++++++..... +.++.+|||+-|.+. .+++...++..+++|+++.
T Consensus 257 D~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 257 DKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred CcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 9999999999999988776 458999999999875 5688899999999999875
No 36
>PRK10749 lysophospholipase L2; Provisional
Probab=99.81 E-value=9.6e-19 Score=183.55 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=157.8
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG 537 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g 537 (732)
+...++..+... +|.++++..+.|.. +.++||++||.. .....+...+..++++||.|+++|+||.|.
T Consensus 27 ~~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~--~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~ 94 (330)
T PRK10749 27 WRQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRI--ESYVKYAELAYDLFHLGYDVLIIDHRGQGR 94 (330)
T ss_pred HhhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCcc--chHHHHHHHHHHHHHCCCeEEEEcCCCCCC
Confidence 344566777776 89999988887632 247899999973 333345566777889999999999998766
Q ss_pred CChhhHHhhccCCC--cccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---
Q 004735 538 YGREFRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--- 611 (732)
Q Consensus 538 ~g~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~--- 611 (732)
..........+... ..-++|+.+.++.+.+. .+..++.++||||||.+++.++. +|++++++|+.+|.....
T Consensus 95 S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~ 172 (330)
T PRK10749 95 SGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPL 172 (330)
T ss_pred CCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCC
Confidence 54321110000000 01245666666665443 24578999999999999998887 999999999999864311
Q ss_pred -H-H-------Hhhcc-----------hh-------------hh---hhhhhhcCChh-------------hhhh-cCcc
Q 004735 612 -M-L-------RAETH-----------KF-------------ES---RYIDNLVGSEK-------------DYYE-KSPI 641 (732)
Q Consensus 612 -~-~-------~~~~~-----------~~-------------~~---~~~~~~~~~~~-------------~~~~-~sp~ 641 (732)
. . ..... .+ .. .+......++. .+.. ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (330)
T PRK10749 173 PSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVL 252 (330)
T ss_pred CcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 0 0 00000 00 00 00000000000 0000 0112
Q ss_pred ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC---CCEEEEEeCCCCccCCCccc--HHHHHHHHHHHHHHH
Q 004735 642 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG---LPVALVEYEGEQHGFRKAEN--IKFTLEQQMVFFARV 713 (732)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g---~~~~~~~~~~~gH~~~~~~~--~~~~~~~~~~fl~~~ 713 (732)
..+.++++|+|+++|++|.+++++.+..+++.+++.+ .+++++++++++|....+.. .+.+++.+++||+++
T Consensus 253 ~~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 253 AGAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hhccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 3467789999999999999999999999999998765 34589999999998765433 678889999999764
No 37
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=2.1e-18 Score=169.39 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=167.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+.+++++. +.++.+++..|.. ..+.|.||++|+..+ ........++.|++.||.|++||+-+..+....
T Consensus 3 ~~v~~~~~--~~~~~~~~a~P~~-------~~~~P~VIv~hei~G--l~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~ 71 (236)
T COG0412 3 TDVTIPAP--DGELPAYLARPAG-------AGGFPGVIVLHEIFG--LNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71 (236)
T ss_pred cceEeeCC--CceEeEEEecCCc-------CCCCCEEEEEecccC--CchHHHHHHHHHHhCCcEEEechhhccCCCCCc
Confidence 45778875 5899999999987 344599999999633 334667788999999999999996442221111
Q ss_pred hH----Hhhc-----cCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHH
Q 004735 542 FR----ERLL-----GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 542 ~~----~~~~-----~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~ 612 (732)
.. .... ..+ .....|+.++++||..++.++.+||+++|+|+||.+++.++.....++++++++|..-..
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~~~~- 149 (236)
T COG0412 72 IEDEPAELETGLVERVDP-AEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGLIAD- 149 (236)
T ss_pred ccccHHHHhhhhhccCCH-HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCCCCC-
Confidence 11 1111 111 345889999999999998889999999999999999999999555899999999863211
Q ss_pred HHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 613 LRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
......++++|+|+.+|+.|..+|......+.+.+.++++.+++.+|+++.|+
T Consensus 150 ---------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~ 202 (236)
T COG0412 150 ---------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202 (236)
T ss_pred ---------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccc
Confidence 01125678999999999999999999999999999999888999999999999
Q ss_pred CCCcc----------cHHHHHHHHHHHHHHHhC
Q 004735 693 FRKAE----------NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 693 ~~~~~----------~~~~~~~~~~~fl~~~l~ 715 (732)
|..+. ...+.++++++||+++++
T Consensus 203 F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 203 FANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred cccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 97542 356788999999999885
No 38
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.81 E-value=5.8e-19 Score=180.68 Aligned_cols=237 Identities=27% Similarity=0.423 Sum_probs=157.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
....++|.+. +|.+|+++++.|++ ..++.|+||.+||.+... ..+. ....++.+||+|+.+|.||.++..
T Consensus 55 ~vy~v~f~s~-~g~~V~g~l~~P~~------~~~~~Pavv~~hGyg~~~--~~~~-~~~~~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 55 EVYDVSFESF-DGSRVYGWLYRPKN------AKGKLPAVVQFHGYGGRS--GDPF-DLLPWAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEES-------SSSSEEEEEEE--TT--G--GGHH-HHHHHHHTT-EEEEE--TTTSSSS
T ss_pred EEEEEEEEcc-CCCEEEEEEEecCC------CCCCcCEEEEecCCCCCC--CCcc-cccccccCCeEEEEecCCCCCCCC
Confidence 4567899987 99999999999985 257899999999974332 2222 233578999999999999987543
Q ss_pred hhhHHhh----cc--CCCcc----------cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEe
Q 004735 540 REFRERL----LG--RWGIV----------DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 603 (732)
Q Consensus 540 ~~~~~~~----~~--~~~~~----------~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~ 603 (732)
....... .+ ..|.. .+.|+..++++|.+.+.+|.+||++.|.|.||.+++.+++..++|+++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~ 204 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA 204 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence 3221110 00 01111 26899999999999999999999999999999999999995557999999
Q ss_pred ecCc-CCHHHHHhhcc---hh--hhhhhh---hhcC-Ch---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHH
Q 004735 604 LYGV-ADLSMLRAETH---KF--ESRYID---NLVG-SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 670 (732)
Q Consensus 604 ~~~~-~d~~~~~~~~~---~~--~~~~~~---~~~~-~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~ 670 (732)
..|. .|+........ .+ ...|+. .... .+ +.+.-.+..+.+.+|++|+++..|-.|.+||+......
T Consensus 205 ~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~ 284 (320)
T PF05448_consen 205 DVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAA 284 (320)
T ss_dssp ESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHH
T ss_pred cCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHH
Confidence 9885 56665433221 11 122322 1111 11 23455677888999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 671 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
++.+.. +.++.+||..+|.... ....++.++||.++
T Consensus 285 yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 285 YNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 999975 6799999999996432 23367888998874
No 39
>PHA02857 monoglyceride lipase; Provisional
Probab=99.81 E-value=9.6e-19 Score=179.44 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=154.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
||..+++.+|.|.. .+.|+|+++||.+ .....|...++.|+++||.|+++|+||.|..... ......+
T Consensus 9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~--~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~--~~~~~~~ 76 (276)
T PHA02857 9 DNDYIYCKYWKPIT--------YPKALVFISHGAG--EHSGRYEELAENISSLGILVFSHDHIGHGRSNGE--KMMIDDF 76 (276)
T ss_pred CCCEEEEEeccCCC--------CCCEEEEEeCCCc--cccchHHHHHHHHHhCCCEEEEccCCCCCCCCCc--cCCcCCH
Confidence 89999999998842 3458899999973 4456777889999999999999999987643221 0001111
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh----------c--
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE----------T-- 617 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~----------~-- 617 (732)
. ..++|+...++++.+.. ..++++++|||+||.+++.++. +|++++++|+.+|..+....... .
T Consensus 77 ~-~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 77 G-VYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred H-HHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1 12677777777776542 2468999999999999999887 99999999999997542211000 0
Q ss_pred ch----hhhhhhh-------hhcCCh--------hhh-h----h-cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHH
Q 004735 618 HK----FESRYID-------NLVGSE--------KDY-Y----E-KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 672 (732)
Q Consensus 618 ~~----~~~~~~~-------~~~~~~--------~~~-~----~-~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~ 672 (732)
.. +...... ....++ ..+ . . ......+.++++|+|+++|++|.++|+..+.++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~ 233 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQ 233 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHH
Confidence 00 0000000 000000 000 0 0 00123467889999999999999999999999988
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCc--ccHHHHHHHHHHHHHHHh
Q 004735 673 ALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 673 ~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~l 714 (732)
.+.. ++++++++++||.+..+ +..+++++.+.+||++..
T Consensus 234 ~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 234 HANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 7743 46899999999987644 447889999999998863
No 40
>PRK10162 acetyl esterase; Provisional
Probab=99.81 E-value=3.8e-18 Score=177.13 Aligned_cols=230 Identities=17% Similarity=0.251 Sum_probs=161.4
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHH-CCCEEEEEcCCCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~-~G~~v~~~d~rG~~g~ 538 (732)
.+.+.+++. +| .+.+.+|.|.. ...|+||++|||++.... ..+......|+. .|+.|+.+|||.++++
T Consensus 57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 566778876 55 68999999953 235999999999765433 234556677776 5999999999987653
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEeecCcC
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVA 608 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~------p~~~~a~v~~~~~~ 608 (732)
.. . ..++|+.++++|+.++ ..+|++||+|+|+|+||++++.++. . +.+++++++++|+.
T Consensus 127 ~~----------p-~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 RF----------P-QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred CC----------C-CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 21 1 2378999999998763 5678999999999999999998875 1 35789999999988
Q ss_pred CHHHHHhh---cc---hh----hhhhhhhhcCChhhhhhcCccccC--CCC---CCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 609 DLSMLRAE---TH---KF----ESRYIDNLVGSEKDYYEKSPINFV--DKF---SCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 609 d~~~~~~~---~~---~~----~~~~~~~~~~~~~~~~~~sp~~~~--~~i---~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
++...... .. .+ ...+...++++.. ...+|.... ..+ -.|++|++|+.|... .+++.+.++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~--~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDA--DRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCcc--ccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 75321100 00 00 0111112222111 012232111 222 379999999999875 589999999
Q ss_pred HHhCCCCEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhC
Q 004735 674 LKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 715 (732)
|+++|+++++++++|..|+|... +...+.++.+.+||+++++
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999997432 3456788889999998875
No 41
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.81 E-value=1.2e-18 Score=184.52 Aligned_cols=239 Identities=14% Similarity=0.150 Sum_probs=156.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
+..+... +|.++.+..+.|.+ .+..|+||++||.+... ...+...+..|++.||.|+++|+||.|......
T Consensus 63 ~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 133 (349)
T PLN02385 63 ESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGLH 133 (349)
T ss_pred eeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCCC
Confidence 3344455 89999999998864 34568999999974322 223456778888899999999999875432110
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH------H--
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM------L-- 613 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~------~-- 613 (732)
.....+ ...++|+.+.++.+..+...+..+++|+||||||.+++.++. +|++++++|+++|...... .
T Consensus 134 --~~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~ 210 (349)
T PLN02385 134 --GYIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVL 210 (349)
T ss_pred --CCcCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHH
Confidence 000000 012567777777776544445568999999999999999988 9999999999998643210 0
Q ss_pred --H---hh-cch--h--hhhhhhhhcCCh-----------------------hhhhh-cCccccCCCCCCCEEEEEeCCC
Q 004735 614 --R---AE-THK--F--ESRYIDNLVGSE-----------------------KDYYE-KSPINFVDKFSCPIILFQGLED 659 (732)
Q Consensus 614 --~---~~-~~~--~--~~~~~~~~~~~~-----------------------~~~~~-~sp~~~~~~i~~P~Lii~G~~D 659 (732)
. .. ... . ...+....+.+. +.+.. ......+.++++|+|++||++|
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D 290 (349)
T PLN02385 211 QILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEAD 290 (349)
T ss_pred HHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCC
Confidence 0 00 000 0 000000000000 00000 0112336778999999999999
Q ss_pred CccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--ccc-HHHHHHHHHHHHHHHhC
Q 004735 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AEN-IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~-~~~~~~~~~~fl~~~l~ 715 (732)
.++++..++.+++.+... +.+++++++++|.+.. ++. ...+++.+++||++++.
T Consensus 291 ~vv~~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 291 KVTDPSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CccChHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 999999999998877532 4589999999998653 222 44588999999998874
No 42
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.80 E-value=5.8e-19 Score=161.15 Aligned_cols=202 Identities=18% Similarity=0.253 Sum_probs=153.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
..||++||.. ......+.+.++|.++||.|.+|+|+|.+-.+..+......+| .+|+.++.++|.++++ +.
T Consensus 16 ~AVLllHGFT--Gt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFT--GTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccC--CCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 7899999983 3345677889999999999999999998877777777666666 7899999999998753 68
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH---HHhhcchhhhhhhhhhcC-C----hhhhhhc--------
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---LRAETHKFESRYIDNLVG-S----EKDYYEK-------- 638 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---~~~~~~~~~~~~~~~~~~-~----~~~~~~~-------- 638 (732)
|.++|.||||.+++.++. +| .+++|.+|+...... .....-.+..+ .....+ + .+.|...
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~-~kk~e~k~~e~~~~e~~~~~~~~~~~~ 163 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRN-AKKYEGKDQEQIDKEMKSYKDTPMTTT 163 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHH-hhhccCCCHHHHHHHHHHhhcchHHHH
Confidence 999999999999999998 77 788888877654221 11111110000 001111 0 0111111
Q ss_pred --------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 639 --------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 639 --------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.....++.|..|+++++|.+|..+|.+.+..+++.+... +.++.+|++.||.+...+.++++.+.++.||
T Consensus 164 ~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL 241 (243)
T COG1647 164 AQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFL 241 (243)
T ss_pred HHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHh
Confidence 123457788999999999999999999999999998765 5599999999999999899999999999998
Q ss_pred H
Q 004735 711 A 711 (732)
Q Consensus 711 ~ 711 (732)
+
T Consensus 242 ~ 242 (243)
T COG1647 242 E 242 (243)
T ss_pred h
Confidence 6
No 43
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=6.7e-18 Score=179.08 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=161.0
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
....+... ++..+++..|.|.. ....|+||++||.+. ....+...+..|+++||.|+++|+||.+.....
T Consensus 111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~--~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNE--HSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchH--HHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 44556666 78899999998864 345689999999743 334466788889999999999999987654322
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEeecCcCCHHHH---Hh
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVADLSML---RA 615 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~---~~~a~v~~~~~~d~~~~---~~ 615 (732)
.. .........+|+.++++++..+. +..+++++||||||.+++.++.+|+ +++++|+.+|...+... ..
T Consensus 181 ~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 181 HG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred CC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECcccccccchHHHH
Confidence 10 00000112578888888887652 2357999999999999998776664 79999999997543210 00
Q ss_pred hcchhhhhh----------------------hhhhcCChhhhh------------hcC--ccccCCCCCCCEEEEEeCCC
Q 004735 616 ETHKFESRY----------------------IDNLVGSEKDYY------------EKS--PINFVDKFSCPIILFQGLED 659 (732)
Q Consensus 616 ~~~~~~~~~----------------------~~~~~~~~~~~~------------~~s--p~~~~~~i~~P~Lii~G~~D 659 (732)
....+.... ......++..+. ... ....+.++++|+|++||++|
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D 335 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTAD 335 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 000000000 000000000000 000 11335678999999999999
Q ss_pred CccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 660 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 660 ~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
.++|++.+.++++.+... ..+++++++++|....++..+++++.+.+||+.+++.
T Consensus 336 ~vvp~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 336 RVTDPLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLDL 390 (395)
T ss_pred CCCCHHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999887543 4588899999998766667899999999999998863
No 44
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.78 E-value=6.9e-17 Score=171.09 Aligned_cols=230 Identities=15% Similarity=0.186 Sum_probs=170.7
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
.+|++.|-++ ...+.++.. ......|.|+|||+.++|+.-.... ..++|++++++++ ..++..-..
T Consensus 173 ~~l~~~D~dg--~~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~~-----~~~i~~~~l~~g~---~~~i~~~~g 238 (425)
T COG0823 173 YELALGDYDG--YNQQKLTDS----GSLILTPAWSPDGKKLAYVSFELGG-----CPRIYYLDLNTGK---RPVILNFNG 238 (425)
T ss_pred ceEEEEccCC--cceeEeccc----CcceeccccCcCCCceEEEEEecCC-----CceEEEEeccCCc---cceeeccCC
Confidence 4899999885 667777765 4556778999999999998554332 1589999999988 666666566
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g 323 (732)
....|+|||||++|+|...++ ...+||++|+. ++...+ +.... +....|.|+|||+ |+|.+++ .|
T Consensus 239 ~~~~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~-~~~~~~---Lt~~~----gi~~~Ps~spdG~~ivf~Sdr-~G 304 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRD-----GSPDIYLMDLD-GKNLPR---LTNGF----GINTSPSWSPDGSKIVFTSDR-GG 304 (425)
T ss_pred ccCCccCCCCCCEEEEEECCC-----CCccEEEEcCC-CCccee---cccCC----ccccCccCCCCCCEEEEEeCC-CC
Confidence 667899999999999998544 36779999998 555422 33333 4445999999999 9999999 99
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCc
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTD 402 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~ 402 (732)
..+||+++++++..++++........|.|++ +|++|++.+...|...|...++.++. ++.++.....
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~Sp------------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~ 372 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSP------------DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN 372 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCCC------------CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence 9999999999999999996554445889997 89999998865677889999887776 7777765432
Q ss_pred eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 403 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
-.+- ..++..++|... ..+...++.+++.+..
T Consensus 373 e~ps~~~ng~~i~~~s~-~~~~~~l~~~s~~g~~ 405 (425)
T COG0823 373 ESPSWAPNGRMIMFSSG-QGGGSVLSLVSLDGRV 405 (425)
T ss_pred CCCCcCCCCceEEEecc-CCCCceEEEeecccee
Confidence 2222 334444444444 3466678887765543
No 45
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=8.3e-17 Score=174.78 Aligned_cols=246 Identities=14% Similarity=0.104 Sum_probs=171.3
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~ 176 (732)
+.+++|+..+.+......|+.++.++ +..+.++..... .....|++++++|+|....+ .+||++|+.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg-~~~~~lt~~~~~-------v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-- 237 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG-FNQFIVNRSSQP-------LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-- 237 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC-CCceEeccCCCc-------cccceEcCCCCEEEEEEecCCCcEEEEEeCCC--
Confidence 67888887655433346777776652 234444432201 12345667777899986543 3799999987
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
++.++++... .....++|||||++|++.....+ ..+||++|+++++ .++++.+......|.|||||+
T Consensus 238 g~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 238 GARKVVASFR----GHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred CceEEEecCC----CccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCC
Confidence 7777777542 12346899999999988765332 2579999999888 889988777777899999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+. ..+ ..+||.++.. ++.. ..+. .. . ..+.|||||+ |++.+. .+++++|+.++
T Consensus 305 ~i~f~s~-~~g----~~~I~~~~~~-~~~~---~~l~-~~----~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g 363 (429)
T PRK01742 305 SILFTSD-RSG----SPQVYRMSAS-GGGA---SLVG-GR----G--YSAQISADGKTLVMING-----DNVVKQDLTSG 363 (429)
T ss_pred EEEEEEC-CCC----CceEEEEECC-CCCe---EEec-CC----C--CCccCCCCCCEEEEEcC-----CCEEEEECCCC
Confidence 9999873 322 4579998876 4543 2232 21 2 3578999999 777643 24788999999
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
+.+.++.. .....+.|++ +++.|++.+.+.+...+++++.+++..+.|+....
T Consensus 364 ~~~~lt~~-~~~~~~~~sP------------dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 364 STEVLSST-FLDESPSISP------------NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred CeEEecCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 88877633 2335677776 88889998876666778888888888888875444
No 46
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.78 E-value=1.2e-16 Score=174.30 Aligned_cols=252 Identities=15% Similarity=0.231 Sum_probs=179.9
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCC--CeEEEEeCCCCC
Q 004735 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (732)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~--~~l~~~d~~~~~ 176 (732)
+.+++|+.... ..++..|+..+.++ +..+.++...... ....|++++..|+|..... .+||++++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~g-~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-- 223 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYDG-ANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-- 223 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCCC-CCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCC--
Confidence 67788887654 34666788877652 3556665432111 1224666677898886544 4899999987
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
+..++++... .....+.|||||+.|+|.....+ ..+||+++++++. .++++........|.|||||+
T Consensus 224 g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~s~dg~ 290 (417)
T TIGR02800 224 GQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQ---LTRLTNGPGIDTEPSWSPDGK 290 (417)
T ss_pred CCEEEeecCC----CCccceEECCCCCEEEEEECCCC------CccEEEEECCCCC---EEECCCCCCCCCCEEECCCCC
Confidence 7677766542 12245789999999888765332 2589999999988 788886665566799999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
+|+|.+. +.+ ..+||++|++ +++.. ++... . .....+.|+|||+ +++.... .+..+|+.+|+.++
T Consensus 291 ~l~~~s~-~~g----~~~iy~~d~~-~~~~~--~l~~~-~----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 291 SIAFTSD-RGG----SPQIYMMDAD-GGEVR--RLTFR-G----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGG 356 (417)
T ss_pred EEEEEEC-CCC----CceEEEEECC-CCCEE--EeecC-C----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCC
Confidence 9999873 322 3479999998 66653 22222 2 4556889999999 7777665 57788999999998
Q ss_pred eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 336 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 336 ~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
..+.++... ....|.|++ +++.|++.+.+++...||+++.+++..+.++.+..
T Consensus 357 ~~~~l~~~~-~~~~p~~sp------------dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 357 GERVLTDTG-LDESPSFAP------------NGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred CeEEccCCC-CCCCceECC------------CCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 877776432 334567776 88999999998888899999988877777876543
No 47
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.77 E-value=1e-17 Score=158.32 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=160.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHH-CCCEEEEEcCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 538 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~rG~~g~ 538 (732)
..+.+..+++ .|..+.+..+.|.. ...+++|+.||. ...-.........+.. .+++++.+||+|.+..
T Consensus 34 ~v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLGQMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchHHHHHHHHHHhhcccceEEEEeccccccc
Confidence 3455666676 78889888888864 346899999996 2211111112222333 4899999999987654
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
+....+. ..++|+.++.++|.+.++ ..++|+++|+|+|...++.++. .| ..++|+.+|+.+..+.....
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~ 172 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPD 172 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccC
Confidence 4332221 348999999999999976 7799999999999999999998 66 99999999999877654431
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
.... .++ ..+.-+..+..+++|+|++||++|.+++..+..++++..++ +++..+..|+||.-. +
T Consensus 173 ~~~~-~~~----------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~--~ 236 (258)
T KOG1552|consen 173 TKTT-YCF----------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDI--E 236 (258)
T ss_pred cceE-Eee----------ccccccCcceeccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCccc--c
Confidence 1100 111 11222566778889999999999999999999999999886 578889999999743 3
Q ss_pred cHHHHHHHHHHHHHHHhC
Q 004735 698 NIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 698 ~~~~~~~~~~~fl~~~l~ 715 (732)
-..+.++.+..|+....+
T Consensus 237 ~~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 237 LYPEYIEHLRRFISSVLP 254 (258)
T ss_pred cCHHHHHHHHHHHHHhcc
Confidence 445777888888877665
No 48
>PRK11460 putative hydrolase; Provisional
Probab=99.75 E-value=8.1e-17 Score=159.16 Aligned_cols=185 Identities=18% Similarity=0.093 Sum_probs=128.9
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCC----CCChhhHHhhccCCCcc-------cHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST----GYGREFRERLLGRWGIV-------DVNDCCS 560 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~----g~g~~~~~~~~~~~~~~-------~~~D~~~ 560 (732)
.+..|+||++||.+.+ ...+......|...++.+..+.++|.. +.+..|.... ...... ..+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 3456899999997433 345667778888777655555555521 1233332210 000001 1233445
Q ss_pred HHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcC
Q 004735 561 CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 639 (732)
Q Consensus 561 ~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 639 (732)
.++++.++..++.+||+++|+|+||.+++.++. +|+.+.+++++++.... . +
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-----------------~---~------- 142 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-----------------L---P------- 142 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-----------------c---c-------
Confidence 667777777788899999999999999999887 88888888887764210 0 0
Q ss_pred ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 640 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 640 p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
......+|+|++||++|+++|++.++++.+.|++.|.++++++|++++|.+.. +.++.+.+||.++|
T Consensus 143 ---~~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ---ETAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred ---ccccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 01123689999999999999999999999999999999999999999998853 44555556665554
No 49
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.74 E-value=4e-16 Score=177.75 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=153.9
Q ss_pred HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc---------------CCCCCCcEEEE
Q 004735 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---------------GKADEKRLCIT 579 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---------------~~~d~~ri~i~ 579 (732)
...++|+.+||+|+.+|.||.+++...+. .++..+.+|..++|+|+..+ .+. ..||+++
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~ 343 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMT 343 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEE
Confidence 35688999999999999999877544331 23345689999999999853 333 4799999
Q ss_pred EcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc------hh-------hhh---------------------h
Q 004735 580 GGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH------KF-------ESR---------------------Y 624 (732)
Q Consensus 580 G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~------~~-------~~~---------------------~ 624 (732)
|.||||++++.+++ .|+.++++|+.+++.++..++.... .+ ... +
T Consensus 344 G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~ 423 (767)
T PRK05371 344 GKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKL 423 (767)
T ss_pred EEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHH
Confidence 99999999998888 8899999999999988765432210 00 000 0
Q ss_pred hhhhc-------C-ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 625 IDNLV-------G-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 625 ~~~~~-------~-~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
+..+. + ..+.|...+++.+++++++|+|++||.+|..+++.++.++++++++.+++.++.+.++ +|.....
T Consensus 424 ~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 424 LAELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred HhhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 00000 0 1235566778888999999999999999999999999999999999888888877654 6865544
Q ss_pred ccHHHHHHHHHHHHHHHhCCCCCC-CCCCcccc
Q 004735 697 ENIKFTLEQQMVFFARVVGHFDVA-DEIIPIKI 728 (732)
Q Consensus 697 ~~~~~~~~~~~~fl~~~l~~~~~~-~~~~~~~~ 728 (732)
....++.+.+++||+++|++..+. +..|++.+
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~~ng~~~~~pv~i 535 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGIDNGVENELPAVI 535 (767)
T ss_pred hhHHHHHHHHHHHHHhccccCCCCcccCCcceE
Confidence 456678899999999999875543 23345544
No 50
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.74 E-value=1.4e-16 Score=162.39 Aligned_cols=235 Identities=17% Similarity=0.217 Sum_probs=158.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
.+..+.+. +|..+....+.+.. .+..+||++||. ......+...+..|..+||.|+++|.||.|.+.+
T Consensus 10 ~~~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~--~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r- 77 (298)
T COG2267 10 TEGYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGL--GEHSGRYEELADDLAARGFDVYALDLRGHGRSPR- 77 (298)
T ss_pred ccceeecC-CCceEEEEeecCCC--------CCCcEEEEecCc--hHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC-
Confidence 44566666 89999999888764 223899999998 5555667778999999999999999998776543
Q ss_pred hHHhhccCCCc--ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--HHhh
Q 004735 542 FRERLLGRWGI--VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAE 616 (732)
Q Consensus 542 ~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--~~~~ 616 (732)
...+.... .-+.|+.+.++.+... .-..+++|+||||||.+++.++. ++..++++|+.+|...+.. ....
T Consensus 78 ---~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~ 152 (298)
T COG2267 78 ---GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLI 152 (298)
T ss_pred ---CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHH
Confidence 11111111 1134444455554433 12478999999999999999998 8899999999999887662 1110
Q ss_pred cch--------hhhhh-hh-----hhc----C-Chh--hhhhcCc-----------------------cccCCCCCCCEE
Q 004735 617 THK--------FESRY-ID-----NLV----G-SEK--DYYEKSP-----------------------INFVDKFSCPII 652 (732)
Q Consensus 617 ~~~--------~~~~~-~~-----~~~----~-~~~--~~~~~sp-----------------------~~~~~~i~~P~L 652 (732)
... +...+ .. ... . +++ .....+| ......+++|+|
T Consensus 153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvL 232 (298)
T COG2267 153 LARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVL 232 (298)
T ss_pred HHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEE
Confidence 000 00000 00 000 0 110 0011112 112456789999
Q ss_pred EEEeCCCCccC-hHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHhC
Q 004735 653 LFQGLEDKVVP-PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI--KFTLEQQMVFFARVVG 715 (732)
Q Consensus 653 ii~G~~D~~v~-~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 715 (732)
+++|++|.+++ .+...++++.+... ++++++++|+.|....+... +++++.+.+|+.+.+.
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 99999999999 67777777765543 36999999999998777776 8999999999998775
No 51
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.74 E-value=5.4e-17 Score=146.61 Aligned_cols=231 Identities=19% Similarity=0.231 Sum_probs=168.9
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
..-+.+++.++ |..++++|+...+ ...|+++++|+..+.. +.......-++...++.|+.++|||.+..
T Consensus 52 ~pye~i~l~T~-D~vtL~a~~~~~E---------~S~pTlLyfh~NAGNm-Ghr~~i~~~fy~~l~mnv~ivsYRGYG~S 120 (300)
T KOG4391|consen 52 MPYERIELRTR-DKVTLDAYLMLSE---------SSRPTLLYFHANAGNM-GHRLPIARVFYVNLKMNVLIVSYRGYGKS 120 (300)
T ss_pred CCceEEEEEcC-cceeEeeeeeccc---------CCCceEEEEccCCCcc-cchhhHHHHHHHHcCceEEEEEeeccccC
Confidence 45688999998 9999999998732 3679999999963332 22333334456778999999999975543
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE- 616 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~- 616 (732)
..+..+. |. .-|..++++||..++..|..+++++|.|.||.+|..+++ ..+++.|+++-..+..+..+...
T Consensus 121 ~GspsE~-----GL--~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~ 193 (300)
T KOG4391|consen 121 EGSPSEE-----GL--KLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPL 193 (300)
T ss_pred CCCcccc-----ce--eccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhe
Confidence 2221111 11 568899999999999999999999999999999999998 88899999999988887544322
Q ss_pred cchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~ 696 (732)
...+...++..+. -+.. +.....+.+-+.|.|++.|.+|.+||+-+.+++++..... ..++..||++.|+-..
T Consensus 194 v~p~~~k~i~~lc-~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~- 266 (300)
T KOG4391|consen 194 VFPFPMKYIPLLC-YKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTW- 266 (300)
T ss_pred eccchhhHHHHHH-HHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceE-
Confidence 2233333333222 1112 2233345566789999999999999999999999987665 3489999999997322
Q ss_pred ccHHHHHHHHHHHHHHHhC
Q 004735 697 ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 697 ~~~~~~~~~~~~fl~~~l~ 715 (732)
..+-.++.+.+|+.+...
T Consensus 267 -i~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 267 -ICDGYFQAIEDFLAEVVK 284 (300)
T ss_pred -EeccHHHHHHHHHHHhcc
Confidence 234678888999988776
No 52
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.73 E-value=4.9e-16 Score=164.65 Aligned_cols=207 Identities=17% Similarity=0.286 Sum_probs=153.1
Q ss_pred eeEEECCEEEEEeCCC---CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 149 AFRIFGDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.|+.++..+.|..... .++|++++++ +...++... ......|+|||||++|+|+..+.+ ..+||+
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~~~----~g~~~~P~fspDG~~l~f~~~rdg------~~~iy~ 266 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVILNF----NGNNGAPAFSPDGSKLAFSSSRDG------SPDIYL 266 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccC--Cccceeecc----CCccCCccCCCCCCEEEEEECCCC------CccEEE
Confidence 3555566766664433 3699999998 555555543 233467899999999999987653 379999
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+|+.++. .++|+...+....|.|||||++|+|++ ++.+ ..+||+++++ ++..++++ ... +....
T Consensus 267 ~dl~~~~---~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G----~p~I~~~~~~-g~~~~riT--~~~-----~~~~~ 330 (425)
T COG0823 267 MDLDGKN---LPRLTNGFGINTSPSWSPDGSKIVFTS-DRGG----RPQIYLYDLE-GSQVTRLT--FSG-----GGNSN 330 (425)
T ss_pred EcCCCCc---ceecccCCccccCccCCCCCCEEEEEe-CCCC----CcceEEECCC-CCceeEee--ccC-----CCCcC
Confidence 9999998 788998888888999999999999998 6655 3479999998 55553222 222 23348
Q ss_pred ceeCCCCc-EEEEEeccCCeeeEEEEeccCCe-EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
|.|||||+ |+|.... .|.+++...++.++. .+.++ .......|.|.+ +++.+++.+...+...|
T Consensus 331 p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~------------ng~~i~~~s~~~~~~~l 396 (425)
T COG0823 331 PVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILT-STYLNESPSWAP------------NGRMIMFSSGQGGGSVL 396 (425)
T ss_pred ccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcc-ccccCCCCCcCC------------CCceEEEeccCCCCceE
Confidence 99999999 8888754 677889999988776 55554 333445788876 88888888887788889
Q ss_pred EEEECCCCceEEec
Q 004735 384 GILDDFGHSLSLLD 397 (732)
Q Consensus 384 y~~~~~~~~~~~lt 397 (732)
+.++..+...+.+.
T Consensus 397 ~~~s~~g~~~~~~~ 410 (425)
T COG0823 397 SLVSLDGRVSRPLP 410 (425)
T ss_pred EEeeccceeEEEEe
Confidence 98887766555443
No 53
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=2.6e-17 Score=154.48 Aligned_cols=234 Identities=22% Similarity=0.300 Sum_probs=162.3
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
-.++|++. .|.+|.+|+..|.. +++++|+||-.||..++.. .+. -.-.|+..||+|+.+|.||.+++..+
T Consensus 57 ydvTf~g~-~g~rI~gwlvlP~~------~~~~~P~vV~fhGY~g~~g--~~~-~~l~wa~~Gyavf~MdvRGQg~~~~d 126 (321)
T COG3458 57 YDVTFTGY-GGARIKGWLVLPRH------EKGKLPAVVQFHGYGGRGG--EWH-DMLHWAVAGYAVFVMDVRGQGSSSQD 126 (321)
T ss_pred EEEEEecc-CCceEEEEEEeecc------cCCccceEEEEeeccCCCC--Ccc-ccccccccceeEEEEecccCCCcccc
Confidence 35788887 99999999999987 3588999999999744432 221 23457899999999999998776331
Q ss_pred hHHhhcc-----C--CCcc----------cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEee
Q 004735 542 FRERLLG-----R--WGIV----------DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 604 (732)
Q Consensus 542 ~~~~~~~-----~--~~~~----------~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~ 604 (732)
-.....+ . .|.. .+.|+..+++-+.+...+|.+||++.|.|.||.+++.+++...+++++++.
T Consensus 127 t~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~ 206 (321)
T COG3458 127 TADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVAD 206 (321)
T ss_pred CCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhccccc
Confidence 1110000 0 0111 278999999999999999999999999999999999999977789999999
Q ss_pred cCcC-CHHHHHhh--cchhh--hhhhhhhcC-Ch---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHH
Q 004735 605 YGVA-DLSMLRAE--THKFE--SRYIDNLVG-SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 675 (732)
Q Consensus 605 ~~~~-d~~~~~~~--~~~~~--~~~~~~~~~-~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~ 675 (732)
.|+. |+...... ...+. ..|+...-. +. +.+.-.+..+.+.++++|+|+..|-.|++||+.....+++++.
T Consensus 207 ~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~ 286 (321)
T COG3458 207 YPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALT 286 (321)
T ss_pred ccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhccc
Confidence 9975 33332111 00110 111111110 11 2233345567788999999999999999999999999999987
Q ss_pred hCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 676 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 676 ~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
. +.++.+|+.-+|.-.. .-..+.+..|++.
T Consensus 287 ~---~K~i~iy~~~aHe~~p----~~~~~~~~~~l~~ 316 (321)
T COG3458 287 T---SKTIEIYPYFAHEGGP----GFQSRQQVHFLKI 316 (321)
T ss_pred C---CceEEEeeccccccCc----chhHHHHHHHHHh
Confidence 5 4578888877785321 1223345566554
No 54
>PRK10985 putative hydrolase; Provisional
Probab=99.72 E-value=3.8e-16 Score=163.33 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=147.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
...+... ||..+......... .....|+||++||.++..........+..|.++||.|+++|+||.++.....
T Consensus 33 ~~~~~~~-dg~~~~l~w~~~~~------~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~ 105 (324)
T PRK10985 33 WQRLELP-DGDFVDLAWSEDPA------QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL 105 (324)
T ss_pred eeEEECC-CCCEEEEecCCCCc------cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC
Confidence 3445666 78777644332111 1345699999999865443333445678899999999999999976543211
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecCcCCHHHHHhhc--
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVADLSMLRAET-- 617 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~~~d~~~~~~~~-- 617 (732)
.. .+.....+|+.++++++.++.. ..+++++|||+||.+++.++. +++ .+++++++++..++.......
T Consensus 106 ~~----~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~ 179 (324)
T PRK10985 106 HR----IYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQ 179 (324)
T ss_pred cc----eECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhh
Confidence 11 1112347899999999988643 468999999999998777766 543 388888888877643211000
Q ss_pred --chhhhh---------h---hhh-----------h------------c-----C--C-hhhhhhcCccccCCCCCCCEE
Q 004735 618 --HKFESR---------Y---IDN-----------L------------V-----G--S-EKDYYEKSPINFVDKFSCPII 652 (732)
Q Consensus 618 --~~~~~~---------~---~~~-----------~------------~-----~--~-~~~~~~~sp~~~~~~i~~P~L 652 (732)
..+... . ... . + + . .+.|...+....++++++|+|
T Consensus 180 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~l 259 (324)
T PRK10985 180 GFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTL 259 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEE
Confidence 000000 0 000 0 0 0 1 123334445556788999999
Q ss_pred EEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhC
Q 004735 653 LFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 653 ii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 715 (732)
+++|++|++++++....+.+ ...++++++++++||..... .......+.+.+||+.++.
T Consensus 260 ii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 260 IIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred EEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 99999999998766555432 22367899999999953211 1123445667888877664
No 55
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.72 E-value=1.5e-16 Score=155.68 Aligned_cols=191 Identities=17% Similarity=0.116 Sum_probs=123.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cHHHHHHHHCCCEEEEEcCCCCCCCChhh--HHhhccCCCcc
Q 004735 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGIV 553 (732)
Q Consensus 477 ~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~~~~~l~~~G~~v~~~d~rG~~g~g~~~--~~~~~~~~~~~ 553 (732)
+++|.|++. .++.|+||++||+++....... ..+.+.+.+.||.|++||++|.++.+..+ ........+..
T Consensus 1 ~~ly~P~~~------~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T TIGR01840 1 MYVYVPAGL------TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTG 74 (212)
T ss_pred CEEEcCCCC------CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCc
Confidence 368889762 4568999999998654332211 11345555679999999999875433211 11111112334
Q ss_pred cHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCCh
Q 004735 554 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE 632 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 632 (732)
+..|+...++++.++..+|++||+|+|||+||++++.++. +|+++.+++++++......-.. .... ... ......
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~-~~~~-~~~--~~~~~~ 150 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSS-ISAT-PQM--CTAATA 150 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccc-hhhH-hhc--CCCCCH
Confidence 5788999999999988899999999999999999999988 9999999999887642111000 0000 000 000001
Q ss_pred hhhhhc-Cc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 633 KDYYEK-SP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 633 ~~~~~~-sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
..+.+. .. .........|++++||++|.+||++.++++++++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 151 ASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 111110 00 1112233456789999999999999999999999985
No 56
>PLN02511 hydrolase
Probab=99.71 E-value=9.7e-16 Score=163.55 Aligned_cols=240 Identities=15% Similarity=0.144 Sum_probs=150.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 541 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~ 541 (732)
+...+... ||..+....+.+.... .....|+||++||..++.....+...+..+.++||.|+++|+||.++....
T Consensus 72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~ 146 (388)
T PLN02511 72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT 146 (388)
T ss_pred eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 44566676 8888876554432110 123468999999975543322233455667789999999999998764321
Q ss_pred hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCc--ceEEEeecCcCCHHHHH----
Q 004735 542 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDT--FKAGASLYGVADLSMLR---- 614 (732)
Q Consensus 542 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~--~~a~v~~~~~~d~~~~~---- 614 (732)
. ...+.....+|+.++++++..+. ...++.++|||+||.+++.++. ++++ +.+++++++..++....
T Consensus 147 ~----~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~ 220 (388)
T PLN02511 147 T----PQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFH 220 (388)
T ss_pred C----cCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHh
Confidence 0 11122244789999999998764 2468999999999999999888 8876 78888777765542100
Q ss_pred h------------hcchhhhh---hhh---------------------h-----hcC--C-hhhhhhcCccccCCCCCCC
Q 004735 615 A------------ETHKFESR---YID---------------------N-----LVG--S-EKDYYEKSPINFVDKFSCP 650 (732)
Q Consensus 615 ~------------~~~~~~~~---~~~---------------------~-----~~~--~-~~~~~~~sp~~~~~~i~~P 650 (732)
. ........ .+. . ..+ + .+.|...++...+.+|++|
T Consensus 221 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vP 300 (388)
T PLN02511 221 KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVP 300 (388)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCC
Confidence 0 00000000 000 0 000 1 1234455667778899999
Q ss_pred EEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cccH---HHHHHHHHHHHHHHhC
Q 004735 651 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AENI---KFTLEQQMVFFARVVG 715 (732)
Q Consensus 651 ~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~---~~~~~~~~~fl~~~l~ 715 (732)
+|+|+|++|+++|...... .+.+...++++++++++||.... ++.. ....+.+.+||+....
T Consensus 301 tLiI~g~dDpi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 301 LLCIQAANDPIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred eEEEEcCCCCcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999998754321 11223346899999999996322 1110 1246778888887765
No 57
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.70 E-value=1.1e-15 Score=159.29 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=157.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc--HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhcc
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 548 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~--~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~ 548 (732)
.+..+.+.+|.|... .....|+||++|||++........ .....+...|+.|+.+|||-.+.+...
T Consensus 60 ~~~~~~~~~y~p~~~-----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p------- 127 (312)
T COG0657 60 SGDGVPVRVYRPDRK-----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFP------- 127 (312)
T ss_pred CCCceeEEEECCCCC-----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCC-------
Confidence 556677899999210 245689999999998765554433 456667778999999999977764211
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh--CC---CcceEEEeecCcCCHHH----HHhh
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--FR---DTFKAGASLYGVADLSM----LRAE 616 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~p---~~~~a~v~~~~~~d~~~----~~~~ 616 (732)
..++|+.+++.|+.++ ..+|+++|+++|+|.||++++.++. .. ....+.++++|..|... +...
T Consensus 128 ----~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~ 203 (312)
T COG0657 128 ----AALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGY 203 (312)
T ss_pred ----chHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhc
Confidence 3478999999999876 4689999999999999999998886 32 26789999999988765 0000
Q ss_pred c-------chhhhhhhhhhcCChhhh--hhcCccccC--CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 617 T-------HKFESRYIDNLVGSEKDY--YEKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 617 ~-------~~~~~~~~~~~~~~~~~~--~~~sp~~~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
. ......+...+.+..... ...+|+... .. -.|+++++|+.|.+.+ +++.+.++|++.|++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 204 GEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred CCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 0 000112222222211111 234554433 33 4789999999998866 89999999999999999999
Q ss_pred eCCCCccCC--CcccHHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFR--KAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 686 ~~~~gH~~~--~~~~~~~~~~~~~~fl~~ 712 (732)
+++..|+|. ......+.+..+.+|+..
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999999983 323344456667777663
No 58
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.69 E-value=1.7e-15 Score=169.52 Aligned_cols=245 Identities=17% Similarity=0.148 Sum_probs=157.0
Q ss_pred eccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCcc--CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 467 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 467 ~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~--~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
+.. ||.++++.+|.|.. .++.|+||++||...... ........+.|+++||+|+++|+||.+++...+..
T Consensus 2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~ 73 (550)
T TIGR00976 2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDL 73 (550)
T ss_pred cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEe
Confidence 345 89999999999975 457899999999743321 01112245678999999999999998765443211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchh---
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF--- 620 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~--- 620 (732)
++....+|+.++++|+.+++..+ .+|+++|+|+||++++.++. +|+.++++++.++..++.........+
T Consensus 74 -----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~g~~~~~ 147 (550)
T TIGR00976 74 -----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFPGALRLD 147 (550)
T ss_pred -----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccCCeeccc
Confidence 12356899999999999987766 79999999999999999988 889999999999887755321000000
Q ss_pred -hhhhhhh----------------------hcC---C----------------------------h---hhhhhcCcccc
Q 004735 621 -ESRYIDN----------------------LVG---S----------------------------E---KDYYEKSPINF 643 (732)
Q Consensus 621 -~~~~~~~----------------------~~~---~----------------------------~---~~~~~~sp~~~ 643 (732)
...++.. ... . . +.+...+....
T Consensus 148 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 227 (550)
T TIGR00976 148 VLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVSISLWRD 227 (550)
T ss_pred hhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhccCchhhH
Confidence 0000000 000 0 0 01111222234
Q ss_pred CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--------cccHHHHHH--HHHHHHHHH
Q 004735 644 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--------AENIKFTLE--QQMVFFARV 713 (732)
Q Consensus 644 ~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--------~~~~~~~~~--~~~~fl~~~ 713 (732)
+.++++|+|++.|-.|. ....+.+.++.+.+.+ +.++++-| ..|.... ......... ..++||+++
T Consensus 228 ~~~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGp-w~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~ 303 (550)
T TIGR00976 228 LGGSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGP-WTHSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRH 303 (550)
T ss_pred hcCCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEcc-CCCCCcccccCCCccCccccccchhhhhHHHHHHH
Confidence 56789999999999994 4456667777776654 45666544 3575110 000011111 468999999
Q ss_pred hCCCCCC-CCCCccccc
Q 004735 714 VGHFDVA-DEIIPIKID 729 (732)
Q Consensus 714 l~~~~~~-~~~~~~~~~ 729 (732)
|++..+. +..|++.+.
T Consensus 304 Lkg~~~g~~~~p~v~~~ 320 (550)
T TIGR00976 304 LKGGTTGVRSEPKVRLF 320 (550)
T ss_pred hCCCCCCCCCCCceEEE
Confidence 9975443 334566554
No 59
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.69 E-value=1.7e-15 Score=148.12 Aligned_cols=233 Identities=20% Similarity=0.234 Sum_probs=155.3
Q ss_pred EeeccCCCeE-EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 465 EFPTEVPGQK-AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 465 ~~~~~~~g~~-i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
.+..+ +|.. ...|...|. ....|+||++||.-++........+...+..+||.|+++|.||+++......
T Consensus 53 ~v~~p-dg~~~~ldw~~~p~--------~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p 123 (345)
T COG0429 53 RLETP-DGGFIDLDWSEDPR--------AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSP 123 (345)
T ss_pred EEEcC-CCCEEEEeeccCcc--------ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCc
Confidence 44555 5554 455555454 3456999999997666666666678888999999999999999887433211
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHH-HHHHHHHh--CCCcceEEEeecCcCCHHHHHhhc---
Q 004735 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG-YTTLAALA--FRDTFKAGASLYGVADLSMLRAET--- 617 (732)
Q Consensus 544 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG-~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~--- 617 (732)
.-+.....+|+...++++.+... +.++..+|.|+|| +++.+++. ....+.+++.++..+|+.......
T Consensus 124 ----~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~ 197 (345)
T COG0429 124 ----RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSG 197 (345)
T ss_pred ----ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCc
Confidence 11222346999999999988643 6799999999999 66666665 333567777766655543211000
Q ss_pred -c-hhhhhh---------------------------h---------hh-----hcC--C-hhhhhhcCccccCCCCCCCE
Q 004735 618 -H-KFESRY---------------------------I---------DN-----LVG--S-EKDYYEKSPINFVDKFSCPI 651 (732)
Q Consensus 618 -~-~~~~~~---------------------------~---------~~-----~~~--~-~~~~~~~sp~~~~~~i~~P~ 651 (732)
. .+..++ + +. ..| + .+.|+..|.+..+.+|.+|+
T Consensus 198 ~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~Pt 277 (345)
T COG0429 198 FSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPT 277 (345)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccce
Confidence 0 000000 0 00 001 2 36778889999999999999
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCC-cc-cH-HHHHHHHHHHHHHHhC
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRK-AE-NI-KFTLEQQMVFFARVVG 715 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~-~~-~~-~~~~~~~~~fl~~~l~ 715 (732)
||||+.+|+++++...-+.... .+..+.+.+.+.+||. |.. .. .. ....+++.+||+.++.
T Consensus 278 Lii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 278 LIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred EEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 9999999999987554433222 4567899999999994 322 11 11 2456789999998875
No 60
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.67 E-value=2e-15 Score=152.81 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=128.5
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+||++||.+.. ...|...+..+. +||.|+++|+||.+...... . .....+|..+.+..+++. .+.
T Consensus 12 ~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~---~~~~~~~~~~~~~~~i~~--~~~ 79 (257)
T TIGR03611 12 DAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----P---PGYSIAHMADDVLQLLDA--LNI 79 (257)
T ss_pred CCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----c---ccCCHHHHHHHHHHHHHH--hCC
Confidence 46889999998443 344555555554 57999999999876543221 1 112344544444444443 235
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh----hc---------chh---------hhhhhhhhc-
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA----ET---------HKF---------ESRYIDNLV- 629 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~----~~---------~~~---------~~~~~~~~~- 629 (732)
+++.++|||+||++++.++. +|++++++|++++......... .. ..+ ...++....
T Consensus 80 ~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T TIGR03611 80 ERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENAA 159 (257)
T ss_pred CcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccch
Confidence 68999999999999999988 8999999999887543211000 00 000 000000000
Q ss_pred --------------CCh------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 630 --------------GSE------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 630 --------------~~~------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
+.. ..+...+....++++++|+|+++|++|..+|+++++++++.++ +.++++++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~ 235 (257)
T TIGR03611 160 RLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPYG 235 (257)
T ss_pred hhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECCC
Confidence 000 0011122234467789999999999999999999888877664 4578899999
Q ss_pred CccCCCcccHHHHHHHHHHHHH
Q 004735 690 QHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 690 gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
||.+. .++.+++.+.+.+||+
T Consensus 236 gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 236 GHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred CCCcc-ccCHHHHHHHHHHHhc
Confidence 99754 3567778888888875
No 61
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.66 E-value=2.5e-15 Score=154.66 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=125.8
Q ss_pred CEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.....+. +......+.+.||.|+++|+||.+...... ..........+|+.+.++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~---~~~~~~~~~~~~l~~~l~~l------~~~ 101 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVV---MDEQRGLVNARAVKGLMDAL------DIE 101 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCc---CcccccchhHHHHHHHHHHc------CCC
Confidence 67999999754433222 112345567789999999999865432210 00011112244555544443 457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH------------HHHhhc----chhhhhhhh-----------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------MLRAET----HKFESRYID----------- 626 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------------~~~~~~----~~~~~~~~~----------- 626 (732)
++.++|||+||.+++.++. +|++++++|++++..... .+.... ......++.
T Consensus 102 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (282)
T TIGR03343 102 KAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITE 181 (282)
T ss_pred CeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcH
Confidence 9999999999999999998 999999999988642100 000000 000000000
Q ss_pred --------hhcCChh---hhh---------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEe
Q 004735 627 --------NLVGSEK---DYY---------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 686 (732)
Q Consensus 627 --------~~~~~~~---~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~ 686 (732)
.....+. .+. ..+....+.++++|+|+++|++|.+++++.++++.+.++ +++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i 257 (282)
T TIGR03343 182 ELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVF 257 (282)
T ss_pred HHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEe
Confidence 0000011 000 011122356789999999999999999988888877664 5689999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHH
Q 004735 687 EGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 687 ~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+++||.. ..+....+.+.+.+|+.
T Consensus 258 ~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 258 SRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCCcCC-cccCHHHHHHHHHHHhh
Confidence 9999975 44777888888888885
No 62
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.66 E-value=9.4e-15 Score=148.81 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=144.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+.+.|.. +|..+.++++.|.+ . ..+.||++|||+...... .+..+++.|+++||.|+++|+||.+...
T Consensus 3 ~~~~~~~--~~~~l~g~~~~p~~-------~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~ 72 (274)
T TIGR03100 3 RALTFSC--EGETLVGVLHIPGA-------S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE 72 (274)
T ss_pred eeEEEEc--CCcEEEEEEEcCCC-------C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 4577776 58889999999965 2 245777788875433222 2345678899999999999999766432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHH-----HH
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM-----LR 614 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~-----~~ 614 (732)
... ..+. ...+|+.++++++.++.. ..++|+++|||+||++++.++.++.+++++|+.+|...... ..
T Consensus 73 ~~~-----~~~~-~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 73 GEN-----LGFE-GIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC-----CCHH-HHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHH
Confidence 110 0111 125789999999987521 23679999999999999988776678999999998753111 00
Q ss_pred hhc---chhhhhhhhhhc-CC------hhhhhh----c---Cc-----------cccCCCCCCCEEEEEeCCCCccChHH
Q 004735 615 AET---HKFESRYIDNLV-GS------EKDYYE----K---SP-----------INFVDKFSCPIILFQGLEDKVVPPDQ 666 (732)
Q Consensus 615 ~~~---~~~~~~~~~~~~-~~------~~~~~~----~---sp-----------~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (732)
... ......++..++ +. ...+.. . .+ ...+.++++|+|+++|..|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~ 225 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFA 225 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHH
Confidence 000 000001111111 10 000100 1 00 12244678999999999998742111
Q ss_pred H-----HHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 667 A-----RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 667 ~-----~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
. ....+.+.. ..++++++++++|.+.......++.+.+.+||+
T Consensus 226 ~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 226 DSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred HHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 0 222222322 367899999999977677777889999999985
No 63
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.65 E-value=1.3e-15 Score=149.40 Aligned_cols=183 Identities=23% Similarity=0.291 Sum_probs=122.9
Q ss_pred EEEEcCCCCCccCCccc-HHHHHHHH-CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc---CCCC
Q 004735 498 LVKSHGGPTSEARGILN-LSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKAD 572 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~-~~~~~l~~-~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 572 (732)
||++|||++........ .....+++ .|+.|+.+|||-++...- ...++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~~-----------p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAPF-----------PAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSST-----------THHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccccc-----------cccccccccceeeecccccccccc
Confidence 78999998775554433 34555554 899999999996554211 13489999999999987 4578
Q ss_pred CCcEEEEEcChHHHHHHHHHh---CC--CcceEEEeecCcCCH-H----HHH---hhcc-hh-----hhhhhhhhcC-Ch
Q 004735 573 EKRLCITGGSAGGYTTLAALA---FR--DTFKAGASLYGVADL-S----MLR---AETH-KF-----ESRYIDNLVG-SE 632 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~---~p--~~~~a~v~~~~~~d~-~----~~~---~~~~-~~-----~~~~~~~~~~-~~ 632 (732)
+++|+|+|+|.||.+++.++. .. ..++++++++|+.|+ . ... .... .+ ...+.....+ ..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYLPGSD 149 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHHSTGG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998886 22 358999999999876 1 110 0000 00 0011111111 11
Q ss_pred hhhhhcCccccCCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004735 633 KDYYEKSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 694 (732)
Q Consensus 633 ~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 694 (732)
......+|+.. ..+ -+|+++++|+.|.. ..++..++++|++.|++++++++++.+|.|.
T Consensus 150 ~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l--~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 150 RDDPLASPLNA-SDLKGLPPTLIIHGEDDVL--VDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp TTSTTTSGGGS-SCCTTCHEEEEEEETTSTT--HHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred ccccccccccc-cccccCCCeeeeccccccc--hHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 12234556654 123 36899999999976 4688999999999999999999999999874
No 64
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.65 E-value=5.1e-15 Score=154.81 Aligned_cols=233 Identities=18% Similarity=0.178 Sum_probs=143.1
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC--------------------c---c-cHHHHHHH
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------------------I---L-NLSIQYWT 521 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~--------------------~---~-~~~~~~l~ 521 (732)
|.+. +|..++...|.|.+ +..+|+++||........ . + ..+++.|.
T Consensus 2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~ 71 (332)
T TIGR01607 2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN 71 (332)
T ss_pred ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence 4455 88899988888743 347999999964333211 1 1 24688999
Q ss_pred HCCCEEEEEcCCCCCCCChhhHHhhc-cCCCcccHHHHHHHHHHHHhc------------------CCCCCCcEEEEEcC
Q 004735 522 SRGWAFVDVNYGGSTGYGREFRERLL-GRWGIVDVNDCCSCATFLVGS------------------GKADEKRLCITGGS 582 (732)
Q Consensus 522 ~~G~~v~~~d~rG~~g~g~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~------------------~~~d~~ri~i~G~S 582 (732)
++||.|+++|.||.+.....-..... ..|. .-++|+...++.+.+. ..-...+++|+|||
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~g~~~~~~-~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhS 150 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLRGHINCFD-DLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLS 150 (332)
T ss_pred HCCCcEEEecccccCCCccccccccchhhHH-HHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeecc
Confidence 99999999999987653221000000 1110 1256777777766541 01113579999999
Q ss_pred hHHHHHHHHHh-CCC--------cceEEEeecCcCCHHH-----------HHhhcchhhhhhhhhh-------c-CCh--
Q 004735 583 AGGYTTLAALA-FRD--------TFKAGASLYGVADLSM-----------LRAETHKFESRYIDNL-------V-GSE-- 632 (732)
Q Consensus 583 ~GG~~a~~~~~-~p~--------~~~a~v~~~~~~d~~~-----------~~~~~~~~~~~~~~~~-------~-~~~-- 632 (732)
|||.+++.++. +++ .++++|+.+|...+.. .....-.....+...+ . .++
T Consensus 151 mGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 230 (332)
T TIGR01607 151 MGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYV 230 (332)
T ss_pred CccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhh
Confidence 99999998875 432 5888988887643211 0000000000000000 0 000
Q ss_pred hhhhhcCc----------------------cccCCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 633 KDYYEKSP----------------------INFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 633 ~~~~~~sp----------------------~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
......+| ...+.++ ++|+|+++|++|.+++++.+.++++.+... +++++++++
T Consensus 231 ~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~g 308 (332)
T TIGR01607 231 NDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLED 308 (332)
T ss_pred hhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEECC
Confidence 00000111 1123445 689999999999999999998888766432 458899999
Q ss_pred CCccCCCcccHHHHHHHHHHHHH
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++|.+.......++++.+.+||+
T Consensus 309 ~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 309 MDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCccCCCHHHHHHHHHHHhh
Confidence 99998776667889999999985
No 65
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.65 E-value=2.4e-15 Score=137.85 Aligned_cols=145 Identities=26% Similarity=0.321 Sum_probs=111.0
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
+||++||+... ...+...++.|+++||.|+.+|+++.+.... ..++.++++.+.+... +.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP-DPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-TCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-CCCcE
Confidence 58999998443 4456788899999999999999987654311 2345566666533222 78999
Q ss_pred EEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEe
Q 004735 577 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 656 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G 656 (732)
+++|||+||.+++.++...++++++|+++|..+. ..+.+.+.|+++++|
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~~~v~~~v~~~~~~~~-------------------------------~~~~~~~~pv~~i~g 112 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARNPRVKAVVLLSPYPDS-------------------------------EDLAKIRIPVLFIHG 112 (145)
T ss_dssp EEEEETHHHHHHHHHHHHSTTESEEEEESESSGC-------------------------------HHHTTTTSEEEEEEE
T ss_pred EEEEEccCcHHHHHHhhhccceeEEEEecCccch-------------------------------hhhhccCCcEEEEEE
Confidence 9999999999999999833789999999993110 112345679999999
Q ss_pred CCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
++|..+++++..+++++++ .+.+++++++++|+
T Consensus 113 ~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 113 ENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred CCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999887 37799999999994
No 66
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.65 E-value=1.4e-14 Score=153.11 Aligned_cols=250 Identities=15% Similarity=0.165 Sum_probs=173.6
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCe---------------EeeceeecCCCCEEEEEEecc
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLV---------------SYADGIFDPRFNRYVTVREDR 212 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~---------------~~~~~~~spdG~~l~~~~~~~ 212 (732)
..++++++.++|+. +++||+.++.+ +..++||.+... .. +...+.|||||++|+|.+-+.
T Consensus 48 ~~~sP~g~~~~~v~--~~nly~~~~~~--~~~~~lT~dg~~-~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 48 AKWSPDGKYIAFVR--DNNLYLRDLAT--GQETQLTTDGEP-GIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp EEE-SSSTEEEEEE--TTEEEEESSTT--SEEEESES--TT-TEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ceeecCCCeeEEEe--cCceEEEECCC--CCeEEeccccce-eEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 34666677999996 56799999988 888999976311 11 123456999999999997643
Q ss_pred CCC---------------------------CCCceeEEEEEEcCCCCccccEEcc------cCCCceeccccCCCCCeEE
Q 004735 213 RQD---------------------------ALNSTTEIVAIALNGQNIQEPKVLV------SGSDFYAFPRMDPRGERMA 259 (732)
Q Consensus 213 ~~~---------------------------~~~~~~~l~~~d~~~~~~~~~~~lt------~~~~~~~~p~~SPDG~~la 259 (732)
..- ..+..-.|+++++++++ ...+. ..........|++|+++|+
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~---~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK---TTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC---CCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc---EEEeeeccccCCCccCcccceecCCCcEEE
Confidence 310 11356789999999887 43332 2233455789999999888
Q ss_pred EEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC-CCCc-EEEEEeccCCeeeEEEEeccCCeE
Q 004735 260 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGE-LFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 260 ~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-pDg~-l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
+...++.. +...|.++|.. +|+.+.+. ......|......+.+. +||. +++.+.+ .|+.+||.++.+++..
T Consensus 200 ~~~~nR~q---~~~~l~~~d~~-tg~~~~~~--~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~-~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 200 VQWLNRDQ---NRLDLVLCDAS-TGETRVVL--EETSDGWVDVYDPPHFLGPDGNEFLWISER-DGYRHLYLYDLDGGKP 272 (353)
T ss_dssp EEEEETTS---TEEEEEEEEEC-TTTCEEEE--EEESSSSSSSSSEEEE-TTTSSEEEEEEET-TSSEEEEEEETTSSEE
T ss_pred EEEcccCC---CEEEEEEEECC-CCceeEEE--EecCCcceeeecccccccCCCCEEEEEEEc-CCCcEEEEEcccccce
Confidence 77766655 57789999998 67654333 22222555555566665 8887 8888886 8999999999999999
Q ss_pred EEecccccccCC-CceeecccceeeeeecCCCCEEEEEEEE--CCEEEEEEEECC-CCceEEeccCCCce-E-EeeEeCC
Q 004735 338 LAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGILDDF-GHSLSLLDIPFTDI-D-NITLGND 411 (732)
Q Consensus 338 ~~l~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~l~~~s~~--~g~~~ly~~~~~-~~~~~~lt~~~~~v-~-~~~~~~~ 411 (732)
+.||.++.++.. ..|.. +++.|||++.. ....|||+++++ +++.++||...... . .++.+++
T Consensus 273 ~~lT~G~~~V~~i~~~d~------------~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 273 RQLTSGDWEVTSILGWDE------------DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp EESS-SSS-EEEEEEEEC------------TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred eccccCceeecccceEcC------------CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 999988776643 22332 78899999986 457999999999 99999999876654 2 2356677
Q ss_pred EEEEEEeCCCCCc
Q 004735 412 CLFVEGASGVEPS 424 (732)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (732)
.++..+++++.|+
T Consensus 341 y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 341 YYVDTYSGPDTPP 353 (353)
T ss_dssp EEEEEEESSSSCE
T ss_pred EEEEEEcCCCCCC
Confidence 8888888887663
No 67
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.64 E-value=8.8e-15 Score=150.29 Aligned_cols=229 Identities=20% Similarity=0.224 Sum_probs=139.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
..+.++++- .|..|++++..|.. .++.|+||++-|. .+.....+.....+++.+|++++++|.+|.+.
T Consensus 164 ~i~~v~iP~--eg~~I~g~LhlP~~-------~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~-- 231 (411)
T PF06500_consen 164 PIEEVEIPF--EGKTIPGYLHLPSG-------EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGE-- 231 (411)
T ss_dssp EEEEEEEEE--TTCEEEEEEEESSS-------SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGG--
T ss_pred CcEEEEEee--CCcEEEEEEEcCCC-------CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcc--
Confidence 357788887 47999999999985 6778999888665 22222223344567899999999999987543
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC-HHHHHhhc
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-LSMLRAET 617 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d-~~~~~~~~ 617 (732)
+.......+. -.-..++++||.+.+.+|..||+++|.|+||+.+.+++. ++++++++|+..|+.. +..-....
T Consensus 232 -s~~~~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~ 306 (411)
T PF06500_consen 232 -SPKWPLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQ 306 (411)
T ss_dssp -GTTT-S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHH
T ss_pred -cccCCCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHH
Confidence 2111122221 123568899999999999999999999999999999987 9999999999988642 21110111
Q ss_pred chhhhhhhh---hhcC----Chhh----hhhcCcccc--C--CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 618 HKFESRYID---NLVG----SEKD----YYEKSPINF--V--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 618 ~~~~~~~~~---~~~~----~~~~----~~~~sp~~~--~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
.....-|++ ..+| +.+. ...+|-... + .+.++|+|.+.+++|+++|.++..-++. .+.+-+
T Consensus 307 ~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk 382 (411)
T PF06500_consen 307 QRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGK 382 (411)
T ss_dssp TTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-E
T ss_pred hcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCc
Confidence 111111211 1112 1221 233343221 3 4566899999999999999977755543 333446
Q ss_pred EEEeCCCC-ccCCCcccHHHHHHHHHHHHHHHh
Q 004735 683 LVEYEGEQ-HGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 683 ~~~~~~~g-H~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
...++... |. .....+..+.+||++.|
T Consensus 383 ~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 383 ALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp EEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 66666544 53 55688999999999876
No 68
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.64 E-value=1.2e-14 Score=151.08 Aligned_cols=232 Identities=12% Similarity=0.087 Sum_probs=138.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
....+++... +|..++.. |...+ ....|.||++||.+ .....|...+..|.+.||.|+++|+||.+...
T Consensus 20 ~~~~~~~~~~-~~~~~~i~-y~~~G-------~~~~~~lvliHG~~--~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~ 88 (302)
T PRK00870 20 APHYVDVDDG-DGGPLRMH-YVDEG-------PADGPPVLLLHGEP--SWSYLYRKMIPILAAAGHRVIAPDLIGFGRSD 88 (302)
T ss_pred CceeEeecCC-CCceEEEE-EEecC-------CCCCCEEEEECCCC--CchhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 3455666654 56554422 22222 11247899999974 33455677788888889999999999765432
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH------H
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------M 612 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------~ 612 (732)
.. ... .....++..+.+..++++. +.+++.|+|||+||.+++.++. +|+++++++++++..... .
T Consensus 89 ~~---~~~---~~~~~~~~a~~l~~~l~~l--~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 160 (302)
T PRK00870 89 KP---TRR---EDYTYARHVEWMRSWFEQL--DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDA 160 (302)
T ss_pred CC---CCc---ccCCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHH
Confidence 21 000 1123445555555444442 3468999999999999999998 999999999987632100 0
Q ss_pred H--Hhh----cc-----h---------hhhhhhhhh---cCCh------hhhhhc---Cc-----------cccCCCCCC
Q 004735 613 L--RAE----TH-----K---------FESRYIDNL---VGSE------KDYYEK---SP-----------INFVDKFSC 649 (732)
Q Consensus 613 ~--~~~----~~-----~---------~~~~~~~~~---~~~~------~~~~~~---sp-----------~~~~~~i~~ 649 (732)
+ ... .. . ........+ .... ..+... .+ ...+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 240 (302)
T PRK00870 161 FWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDK 240 (302)
T ss_pred HhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCC
Confidence 0 000 00 0 000000000 0000 000000 00 022467889
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
|+|+++|++|++++... .++.+.+... ..+++.+++++||.. ..+..+.+.+.+.+|++++
T Consensus 241 P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 241 PFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred ceEEEecCCCCcccCch-HHHHhhcccc-cccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 99999999999998755 6666666532 123478899999975 4466788888888888653
No 69
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.63 E-value=1.7e-14 Score=149.37 Aligned_cols=207 Identities=12% Similarity=0.063 Sum_probs=129.9
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+ ...|......|+.. |.|+++|+||.|.....-....... .....+|..+.+..++++.. .++
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a~~l~~~l~~l~--~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPN-SFYTFETWGEQLNDFCSDVV--GDP 103 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccccc-ccCCHHHHHHHHHHHHHHhc--CCC
Confidence 789999998544 45677778888766 6999999998765432210000000 11335555555555554432 368
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----------HHH----Hhhc--chhh-------------hhhh
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----------SML----RAET--HKFE-------------SRYI 625 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----------~~~----~~~~--~~~~-------------~~~~ 625 (732)
+.|+|||+||++++.++. +|++++++|++++.... ..+ .... .... ...+
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNIL 183 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHH
Confidence 999999999999999998 99999999999864310 000 0000 0000 0000
Q ss_pred hhhcC-----Ch----------------hhhhhc---C----ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 626 DNLVG-----SE----------------KDYYEK---S----PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 626 ~~~~~-----~~----------------~~~~~~---s----p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
...+. +. ..+... . ....+.++++|+|+++|++|..++.+.++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~--- 260 (294)
T PLN02824 184 CQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD--- 260 (294)
T ss_pred HHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC---
Confidence 00000 00 011000 0 11335678999999999999999988776654432
Q ss_pred CCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 678 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 678 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
...++++++++||.. ..+..+.+.+.+.+|++++
T Consensus 261 -~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 -AVEDFIVLPGVGHCP-QDEAPELVNPLIESFVARH 294 (294)
T ss_pred -CccceEEeCCCCCCh-hhhCHHHHHHHHHHHHhcC
Confidence 235899999999964 4477888999999998753
No 70
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.63 E-value=1.7e-14 Score=146.58 Aligned_cols=226 Identities=19% Similarity=0.232 Sum_probs=154.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC---CcccHHHHHH-HHCCCEEEEEcCCCCCCCChhhHHhh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERL 546 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~---~~~~~~~~~l-~~~G~~v~~~d~rG~~g~g~~~~~~~ 546 (732)
....+...+|.|.... +..+.|+||++|||++.... ..+......+ .+.++.|+.+|||-.+.+...
T Consensus 70 ~~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~P----- 140 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFP----- 140 (336)
T ss_pred CCCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCC-----
Confidence 4556788899997632 12678999999999876543 3344444444 566999999999977654322
Q ss_pred ccCCCcccHHHHHHHHHHHHhc----CCCCCCcEEEEEcChHHHHHHHHHh-----C--CCcceEEEeecCcCCHHHHHh
Q 004735 547 LGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALA-----F--RDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~-----~--p~~~~a~v~~~~~~d~~~~~~ 615 (732)
..++|..+++.|+.++ ..+|++||+|+|-|.||.+|..++. . +.++++.|++.|++.......
T Consensus 141 ------a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~ 214 (336)
T KOG1515|consen 141 ------AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTE 214 (336)
T ss_pred ------ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCC
Confidence 3479999999999885 6789999999999999999987775 2 457999999999875433222
Q ss_pred hcch------------hhhhhhhhhcCChh---hhhhcCccc-----cCCCCC-CCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 616 ETHK------------FESRYIDNLVGSEK---DYYEKSPIN-----FVDKFS-CPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 616 ~~~~------------~~~~~~~~~~~~~~---~~~~~sp~~-----~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
...+ ....++...+.+.. .-...+|.. ...... .|+|++.++.|.. ..++..+.++|
T Consensus 215 ~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L--~D~~~~Y~~~L 292 (336)
T KOG1515|consen 215 SEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL--RDEGLAYAEKL 292 (336)
T ss_pred HHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh--hhhhHHHHHHH
Confidence 1100 00111111111111 001112222 111223 5699999999966 58899999999
Q ss_pred HhCCCCEEEEEeCCCCccCC--Cc--ccHHHHHHHHHHHHHHH
Q 004735 675 KENGLPVALVEYEGEQHGFR--KA--ENIKFTLEQQMVFFARV 713 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~--~~--~~~~~~~~~~~~fl~~~ 713 (732)
++.|++++++.++++.|++. .+ +...+.++.+.+|+.+.
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 99999999999999999863 22 35667778888887754
No 71
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.62 E-value=1e-14 Score=143.04 Aligned_cols=189 Identities=21% Similarity=0.209 Sum_probs=111.2
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHH-HHHHCCCEEEEEcCCC---CCCCCh---hhHHhhccCC-CcccHHHHH----
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGG---STGYGR---EFRERLLGRW-GIVDVNDCC---- 559 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~-~l~~~G~~v~~~d~rG---~~g~g~---~~~~~~~~~~-~~~~~~D~~---- 559 (732)
++..|+||++||.+... ..+..... .+....+.++.++-+- ....|. .|.+...... ...+.+++.
T Consensus 11 ~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp ST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 46679999999974333 22222222 1122466777776321 001122 3332211111 111223333
Q ss_pred ---HHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhh
Q 004735 560 ---SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 635 (732)
Q Consensus 560 ---~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (732)
+.++...+. .++++||+++|+|.||.+++.++. +|..+.++++++|........
T Consensus 89 ~l~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~--------------------- 146 (216)
T PF02230_consen 89 RLDELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESEL--------------------- 146 (216)
T ss_dssp HHHHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCC---------------------
T ss_pred HHHHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccc---------------------
Confidence 333333333 489999999999999999999998 999999999999975322100
Q ss_pred hhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 636 YEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 636 ~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
....... ++|++++||.+|+++|.+.+++..+.|++.+.+++++.|++.||.+. .+.++.+.+||++++
T Consensus 147 -----~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 147 -----EDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp -----HCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred -----cccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 0001111 68999999999999999999999999999999999999999999864 577888999998864
No 72
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.60 E-value=1.3e-14 Score=145.90 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=125.2
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+||++||.+.. ...|...++.| ..||.|+++|+||.+..... . .....++..+.+..+++.. +.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~-----~---~~~~~~~~~~~~~~~i~~~--~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPAL-TPDFRVLRYDKRGHGLSDAP-----E---GPYSIEDLADDVLALLDHL--GI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHh-hcccEEEEecCCCCCCCCCC-----C---CCCCHHHHHHHHHHHHHHh--CC
Confidence 46899999997433 34455566665 46899999999987543211 1 1123556555555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH---HHhh--------cch----hhhhhhhhhcC-------
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---LRAE--------THK----FESRYIDNLVG------- 630 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---~~~~--------~~~----~~~~~~~~~~~------- 630 (732)
+++.++|||+||++++.++. +|++++++++.++...... +... ... ....+......
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 68999999999999999888 8899999888775432110 0000 000 00000000000
Q ss_pred ----------Chh-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 631 ----------SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 631 ----------~~~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
... .+...+....+.++++|+++++|++|..+|.+....+.+.++ +.+++++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 000 011112223456788999999999999999988877776654 45889999999965
Q ss_pred CCcccHHHHHHHHHHHH
Q 004735 694 RKAENIKFTLEQQMVFF 710 (732)
Q Consensus 694 ~~~~~~~~~~~~~~~fl 710 (732)
.. +..+.+.+.+.+||
T Consensus 235 ~~-~~p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CV-EQPEAFNAALRDFL 250 (251)
T ss_pred cc-cChHHHHHHHHHHh
Confidence 43 55667777777775
No 73
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.60 E-value=3.3e-15 Score=152.10 Aligned_cols=209 Identities=22% Similarity=0.279 Sum_probs=139.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc----cc----HHHHHHHHCCCEEEEEcCCCCCCCChhh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI----LN----LSIQYWTSRGWAFVDVNYGGSTGYGREF 542 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~----~~----~~~~~l~~~G~~v~~~d~rG~~g~g~~~ 542 (732)
||.+|.+.+|.| +.. ..++.|+||..|+......... .. .....|+++||+|+..|.||.++++..+
T Consensus 1 DGv~L~adv~~P-~~~----~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~ 75 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD----GGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEF 75 (272)
T ss_dssp TS-EEEEEEEEE---T----TSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B
T ss_pred CCCEEEEEEEec-CCC----CCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcc
Confidence 689999999999 211 2678999999999742210100 00 0122399999999999999988766554
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-HHhh----
Q 004735 543 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-LRAE---- 616 (732)
Q Consensus 543 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-~~~~---- 616 (732)
... ...+.+|..++|+|+.+++..+ .||+++|.|++|+.++.+++ .|..++|++...+..|+.. ....
T Consensus 76 ~~~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~ 149 (272)
T PF02129_consen 76 DPM-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAF 149 (272)
T ss_dssp -TT-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEE
T ss_pred ccC-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcc
Confidence 432 3356899999999999997654 79999999999999999999 8999999999888765433 1000
Q ss_pred ----cchh--------------------h----------hh----------hhhhhc---CChhhhhhcCccccCCCCCC
Q 004735 617 ----THKF--------------------E----------SR----------YIDNLV---GSEKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 617 ----~~~~--------------------~----------~~----------~~~~~~---~~~~~~~~~sp~~~~~~i~~ 649 (732)
...+ . .. +..... ...+.|.+.++...+.++++
T Consensus 150 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~v 229 (272)
T PF02129_consen 150 RLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDV 229 (272)
T ss_dssp BCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--S
T ss_pred cccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCC
Confidence 0000 0 00 000000 02245555566666789999
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENG-LPVALVEYEGEQHG 692 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~~~~~~~~~~~gH~ 692 (732)
|+|+++|-.|.... ..+.+.++++++.+ .+.++++-|. +|+
T Consensus 230 P~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 230 PVLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CEEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999997666 88999999999988 6778888775 574
No 74
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.60 E-value=7.5e-14 Score=142.21 Aligned_cols=243 Identities=17% Similarity=0.158 Sum_probs=161.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
-+..-++.+ ||..+...+..+.+.... +.....|+||++||..++........++..+.++||.|+++|.||.+|...
T Consensus 93 y~Reii~~~-DGG~~~lDW~~~~~~~~~-~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 93 YTREIIKTS-DGGTVTLDWVENPDSRCR-TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred ceeEEEEeC-CCCEEEEeeccCcccccC-CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 345556666 888888877766552110 113467999999998777777666777778888999999999999776433
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCCHH---HH
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADLS---ML 613 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d~~---~~ 613 (732)
..... +.....+|+.++++++.+++. ..++..+|.|+||.+...++. ..++..|+++.+|+ |.. ..
T Consensus 171 tTpr~----f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw-d~~~~~~~ 243 (409)
T KOG1838|consen 171 TTPRL----FTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW-DLLAASRS 243 (409)
T ss_pred CCCce----eecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc-hhhhhhhH
Confidence 32111 223447999999999999853 458999999999999988876 33344444444454 421 11
Q ss_pred Hhh-----------------------------------------cchhhhhhhhhhcC---ChhhhhhcCccccCCCCCC
Q 004735 614 RAE-----------------------------------------THKFESRYIDNLVG---SEKDYYEKSPINFVDKFSC 649 (732)
Q Consensus 614 ~~~-----------------------------------------~~~~~~~~~~~~~~---~~~~~~~~sp~~~~~~i~~ 649 (732)
... ...|+..+....++ -.+.|.+.|+..++++|++
T Consensus 244 ~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~V 323 (409)
T KOG1838|consen 244 IETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKV 323 (409)
T ss_pred HhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhcccccc
Confidence 000 00111112222222 2478888999999999999
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCCc--ccHHHHHHH-HHHHHHHHhC
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRKA--ENIKFTLEQ-QMVFFARVVG 715 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~~--~~~~~~~~~-~~~fl~~~l~ 715 (732)
|+|+|++.+|+++|.. +.-. .....+.++-+.+-..+||- |... .+...++++ +.+||.+..-
T Consensus 324 P~L~ina~DDPv~p~~-~ip~--~~~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~~ 390 (409)
T KOG1838|consen 324 PLLCINAADDPVVPEE-AIPI--DDIKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAIF 390 (409)
T ss_pred cEEEEecCCCCCCCcc-cCCH--HHHhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHHh
Confidence 9999999999999874 2121 22234557888888889993 3221 144566666 8888877653
No 75
>PLN02965 Probable pheophorbidase
Probab=99.60 E-value=4.9e-14 Score=142.57 Aligned_cols=202 Identities=12% Similarity=0.124 Sum_probs=126.9
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcE
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 576 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 576 (732)
.||++||.+. ....|...+..|++.||.|+++|+||.+..... . . .....++..+.+..+++.... .+++
T Consensus 5 ~vvllHG~~~--~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~---~--~--~~~~~~~~a~dl~~~l~~l~~-~~~~ 74 (255)
T PLN02965 5 HFVFVHGASH--GAWCWYKLATLLDAAGFKSTCVDLTGAGISLTD---S--N--TVSSSDQYNRPLFALLSDLPP-DHKV 74 (255)
T ss_pred EEEEECCCCC--CcCcHHHHHHHHhhCCceEEEecCCcCCCCCCC---c--c--ccCCHHHHHHHHHHHHHhcCC-CCCE
Confidence 5999999843 345677788888889999999999987644221 0 0 012244444444444443211 1589
Q ss_pred EEEEcChHHHHHHHHHh-CCCcceEEEeecCcC---C---HHHHH---hhcc-------------h-----hhhhhhhhh
Q 004735 577 CITGGSAGGYTTLAALA-FRDTFKAGASLYGVA---D---LSMLR---AETH-------------K-----FESRYIDNL 628 (732)
Q Consensus 577 ~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~---d---~~~~~---~~~~-------------~-----~~~~~~~~~ 628 (732)
.++||||||.+++.++. +|++++++|+.++.. . ...+. .... . ....+....
T Consensus 75 ~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
T PLN02965 75 ILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHY 154 (255)
T ss_pred EEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHH
Confidence 99999999999999988 999999999887641 1 11110 0000 0 000011000
Q ss_pred -cCC--hh--hh--hh--cCc----------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004735 629 -VGS--EK--DY--YE--KSP----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGE 689 (732)
Q Consensus 629 -~~~--~~--~~--~~--~sp----------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~ 689 (732)
... .+ .+ .. ..+ ...+.++++|+|+++|++|..+|+..++.+.+.+. +.++++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~~ 230 (255)
T PLN02965 155 YYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLEDS 230 (255)
T ss_pred HhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecCC
Confidence 000 00 00 00 000 01234688999999999999999988888777665 4588999999
Q ss_pred CccCCCcccHHHHHHHHHHHHHHH
Q 004735 690 QHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 690 gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
||.+. .+..+++.+.+.+|++..
T Consensus 231 GH~~~-~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 231 DHSAF-FSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCchh-hcCHHHHHHHHHHHHHHh
Confidence 99754 367778888888886653
No 76
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.60 E-value=2.8e-14 Score=146.27 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=135.6
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.+++++.... +...|.||++||.+... ..|......|.+ +|.|+++|+||.+..... ..
T Consensus 10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~-----~~-- 70 (276)
T TIGR02240 10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGANL--ELVFPFIEALDP-DLEVIAFDVPGVGGSSTP-----RH-- 70 (276)
T ss_pred CCcEEEEEEecC---------CCCCCcEEEEeCCCcch--HHHHHHHHHhcc-CceEEEECCCCCCCCCCC-----CC--
Confidence 677887655421 12236789999974433 455666666644 699999999976554321 01
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-------HH--Hhhcchh
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-------ML--RAETHKF 620 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~-------~~--~~~~~~~ 620 (732)
....+++.+.+..+++.. +.+++.|+|||+||.+++.++. +|++++++|+.++..... .. ......+
T Consensus 71 -~~~~~~~~~~~~~~i~~l--~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (276)
T TIGR02240 71 -PYRFPGLAKLAARMLDYL--DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRY 147 (276)
T ss_pred -cCcHHHHHHHHHHHHHHh--CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhh
Confidence 122344444444444432 3468999999999999999998 999999999998764311 00 0000000
Q ss_pred hh-----hhhhhhcC-----Chh----------------hhh------hcCccccCCCCCCCEEEEEeCCCCccChHHHH
Q 004735 621 ES-----RYIDNLVG-----SEK----------------DYY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQAR 668 (732)
Q Consensus 621 ~~-----~~~~~~~~-----~~~----------------~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~ 668 (732)
.. .......+ +++ .+. .......+.++++|+|+++|++|+++++..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~ 227 (276)
T TIGR02240 148 IQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMR 227 (276)
T ss_pred hccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHH
Confidence 00 00000000 000 000 01112336788999999999999999999888
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 669 KIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 669 ~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
++.+.+. ..+++++++ ||.. ..+..+++.+.+.+|+++.-.
T Consensus 228 ~l~~~~~----~~~~~~i~~-gH~~-~~e~p~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 228 LLAWRIP----NAELHIIDD-GHLF-LITRAEAVAPIIMKFLAEERQ 268 (276)
T ss_pred HHHHhCC----CCEEEEEcC-CCch-hhccHHHHHHHHHHHHHHhhh
Confidence 8877764 347788875 9964 346778899999999987654
No 77
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.59 E-value=1.6e-13 Score=135.08 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=130.0
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...|+|+++||.|... ..|+.....|+++||.|+++|+||.+ .+-....... ..+..++.-+..++....
T Consensus 42 ~~gP~illlHGfPe~w--yswr~q~~~la~~~~rviA~DlrGyG---~Sd~P~~~~~---Yt~~~l~~di~~lld~Lg-- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESW--YSWRHQIPGLASRGYRVIAPDLRGYG---FSDAPPHISE---YTIDELVGDIVALLDHLG-- 111 (322)
T ss_pred CCCCEEEEEccCCccc--hhhhhhhhhhhhcceEEEecCCCCCC---CCCCCCCcce---eeHHHHHHHHHHHHHHhc--
Confidence 3469999999997665 44566778899999999999999654 3322111111 223333333444443322
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHHHhhcchh---------------h------------
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLRAETHKF---------------E------------ 621 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~~~~~~~~---------------~------------ 621 (732)
-+|+.++||++|+.+|+.++. +|+++++.|..+.... ..........+ +
T Consensus 112 ~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~~~ 191 (322)
T KOG4178|consen 112 LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEMLV 191 (322)
T ss_pred cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHHhH
Confidence 479999999999999999998 9999999998875443 00000000000 0
Q ss_pred hh----------------------hhhhhc-------------CChhhhhh--cCc---cccCCCCCCCEEEEEeCCCCc
Q 004735 622 SR----------------------YIDNLV-------------GSEKDYYE--KSP---INFVDKFSCPIILFQGLEDKV 661 (732)
Q Consensus 622 ~~----------------------~~~~~~-------------~~~~~~~~--~sp---~~~~~~i~~P~Lii~G~~D~~ 661 (732)
.. .++.-+ +--..|++ +.+ .....++++|++++.|+.|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D~v 271 (322)
T KOG4178|consen 192 KTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLDPV 271 (322)
T ss_pred HhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCccc
Confidence 00 000000 00011111 111 233567889999999999999
Q ss_pred cChHHHHHHHHH-HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 662 VPPDQARKIYKA-LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 662 v~~~~~~~~~~~-l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.++....+.++. +.. -.+.+++++.||. ...+...++.+.+++|+++..
T Consensus 272 ~~~p~~~~~~rk~vp~---l~~~vv~~~~gH~-vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 272 LPYPIFGELYRKDVPR---LTERVVIEGIGHF-VQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred ccchhHHHHHHHhhcc---ccceEEecCCccc-ccccCHHHHHHHHHHHHHhhc
Confidence 887633333333 332 2268899999995 566888999999999998764
No 78
>PLN02872 triacylglycerol lipase
Probab=99.59 E-value=2e-14 Score=151.89 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=159.0
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc----cHHHHHHHHCCCEEEEEcCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~----~~~~~~l~~~G~~v~~~d~rG 534 (732)
-..|+..+.+. ||..+....+.+.... . ...+.|.|+++||...+...+.. ...+..|+++||.|+++|.||
T Consensus 42 y~~e~h~v~T~-DGy~L~l~ri~~~~~~-~--~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 42 YSCTEHTIQTK-DGYLLALQRVSSRNPR-L--GSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred CCceEEEEECC-CCcEEEEEEcCCCCCC-C--CCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 35688889898 9999987777543211 0 12345789999997554444321 235567889999999999999
Q ss_pred CCC-CChhhHHhh-cc----CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEeec
Q 004735 535 STG-YGREFRERL-LG----RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLY 605 (732)
Q Consensus 535 ~~g-~g~~~~~~~-~~----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~---~~~a~v~~~ 605 (732)
.+. +|....... .. .|......|+.++++++.+.. .+++.++|||+||.+++.++.+|+ +++++++++
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAALLC 194 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhhChHHHHHHHHHHHhc
Confidence 653 232211111 11 121222479999999998653 368999999999999986666766 577777777
Q ss_pred CcCCHHH--------HHh----------h------cchhhhhh--------------hhhhcC-----------------
Q 004735 606 GVADLSM--------LRA----------E------THKFESRY--------------IDNLVG----------------- 630 (732)
Q Consensus 606 ~~~d~~~--------~~~----------~------~~~~~~~~--------------~~~~~~----------------- 630 (732)
|+..+.. +.. . ........ +..+.|
T Consensus 195 P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~ 274 (395)
T PLN02872 195 PISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYE 274 (395)
T ss_pred chhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcC
Confidence 6532100 000 0 00000000 000000
Q ss_pred ------------------------------Chhhhhh-cCccccCCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 631 ------------------------------SEKDYYE-KSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 631 ------------------------------~~~~~~~-~sp~~~~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
+...|.. ..|...++++ ++|+++++|++|..+++....++.+.+..
T Consensus 275 pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~- 353 (395)
T PLN02872 275 PHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS- 353 (395)
T ss_pred CCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC-
Confidence 1111211 2345567888 47999999999999999998888887763
Q ss_pred CCCEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHHhC
Q 004735 678 GLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
..+++.+++.+|. +...+..+.+++.+++|++++.+
T Consensus 354 --~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 354 --KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred --ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 2478889999996 45667788899999999998765
No 79
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.59 E-value=8e-14 Score=149.82 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=137.5
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHH---HCCCEEEEEcCCCCCCCCh
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~---~~G~~v~~~d~rG~~g~g~ 540 (732)
.+.+. .+..+++....|.+ ....|.||++||.+... ..|.. ....|. +.+|.|+++|+||.+....
T Consensus 179 ~~~~~-~~~~l~~~~~gp~~-------~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~ 248 (481)
T PLN03087 179 SWLSS-SNESLFVHVQQPKD-------NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPK 248 (481)
T ss_pred eeEee-CCeEEEEEEecCCC-------CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcC
Confidence 34443 57788888887764 23347899999985443 33332 233443 4799999999997654322
Q ss_pred hhHHhhccCCCcccHHHHHHHH-HHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH-------
Q 004735 541 EFRERLLGRWGIVDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------- 611 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------- 611 (732)
.. .. ....++..+.+ ..+++.. +.+++.++||||||++++.++. +|+++++++++++.....
T Consensus 249 p~----~~---~ytl~~~a~~l~~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~ 319 (481)
T PLN03087 249 PA----DS---LYTLREHLEMIERSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQAT 319 (481)
T ss_pred CC----CC---cCCHHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHH
Confidence 10 11 12345555555 2444443 3468999999999999999988 999999999988643110
Q ss_pred -HHHhh---c---c-----hhhhhh------------------hh---hhcCC---hhhhh----hc--Cc---------
Q 004735 612 -MLRAE---T---H-----KFESRY------------------ID---NLVGS---EKDYY----EK--SP--------- 640 (732)
Q Consensus 612 -~~~~~---~---~-----~~~~~~------------------~~---~~~~~---~~~~~----~~--sp--------- 640 (732)
..... . . .....+ +. ..+.. ...+. .. .+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 399 (481)
T PLN03087 320 QYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNII 399 (481)
T ss_pred HHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHH
Confidence 00000 0 0 000000 00 00000 00000 00 00
Q ss_pred ----------c-ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 641 ----------I-NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 641 ----------~-~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
+ ....++++|+|+++|++|.++|++.++.+.+.+. ++++++++++||.....+....+.+.+.+|
T Consensus 400 ~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F 475 (481)
T PLN03087 400 CGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEEI 475 (481)
T ss_pred hchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHHH
Confidence 0 0112688999999999999999999988877764 468999999999744335567777788877
Q ss_pred HHH
Q 004735 710 FAR 712 (732)
Q Consensus 710 l~~ 712 (732)
++.
T Consensus 476 ~~~ 478 (481)
T PLN03087 476 WRR 478 (481)
T ss_pred hhc
Confidence 753
No 80
>PRK11071 esterase YqiA; Provisional
Probab=99.59 E-value=3.8e-14 Score=135.18 Aligned_cols=179 Identities=18% Similarity=0.140 Sum_probs=114.3
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
|.||++||.+.+...+........+.+. +|.|+++|++|. + ++..+.+..++++. +.
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~~ 60 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--GG 60 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--CC
Confidence 6799999985554443333345556553 799999999853 1 23445555555543 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc-chhhhhhhh--hhcCChhhh---hhcCccccCCC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFESRYID--NLVGSEKDY---YEKSPINFVDK 646 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~-~~~~~~~~~--~~~~~~~~~---~~~sp~~~~~~ 646 (732)
+++.++|+|+||++++.++. +|. + +|+++|..+........ ......+.. ..+ ..+.+ ....+ ..+.
T Consensus 61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~-~~i~- 134 (190)
T PRK11071 61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVL-ESRHIYDLKVMQI-DPLE- 134 (190)
T ss_pred CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEE-cHHHHHHHHhcCC-ccCC-
Confidence 68999999999999999998 773 3 47788877743222110 000000000 000 11111 11222 1133
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..+|++++||++|.+||++.+.++++.. .+++++|++|.|. +.++.++.+.+|+.
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~---~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFV---GFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchh---hHHHhHHHHHHHhc
Confidence 5678899999999999999999998842 5667899999985 33778888888874
No 81
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.58 E-value=7.7e-14 Score=143.19 Aligned_cols=200 Identities=18% Similarity=0.130 Sum_probs=125.5
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|......|++ +|.|+++|+||.+...... . ....+++..+.+..++++. +.+
T Consensus 28 ~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~-----~--~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPF-----R--FRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCCCCCCCcc-----c--cCCCHHHHHHHHHHHHHHc--CCC
Confidence 4789999997433 3445566666654 6999999999765432111 0 1123556666666555543 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH---------HHh--hcchh--------------hhhhhhh-
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---------LRA--ETHKF--------------ESRYIDN- 627 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~---------~~~--~~~~~--------------~~~~~~~- 627 (732)
+++|+|||+||.+++.++. +|+++++++++++...... +.. ....+ ...+...
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 7899999999999999988 8999998888876432100 000 00000 0000000
Q ss_pred --hcC--Chhhhh-----------------hcC---ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE
Q 004735 628 --LVG--SEKDYY-----------------EKS---PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 683 (732)
Q Consensus 628 --~~~--~~~~~~-----------------~~s---p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~ 683 (732)
.+. ....+. .+. ....+.++++|+|+++|++|..+|....+.+.+.+. ++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~ 251 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVP----TATL 251 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeE
Confidence 000 000000 000 112356788999999999999999988887766654 4588
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 684 VEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 684 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++++||.+.. +..++..+.+.+|++
T Consensus 252 ~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 252 HVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred EEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 999999997543 567788888888873
No 82
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.58 E-value=1.2e-13 Score=143.04 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=126.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+ ...|...++.|++.+ .|+++|+||.+..... ... ...++..+.+..+++.. ..++
T Consensus 28 ~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G~G~S~~~-----~~~---~~~~~~a~dl~~ll~~l--~~~~ 94 (295)
T PRK03592 28 DPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIGMGASDKP-----DID---YTFADHARYLDAWFDAL--GLDD 94 (295)
T ss_pred CEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCCCCCCCCC-----CCC---CCHHHHHHHHHHHHHHh--CCCC
Confidence 689999998543 355667788888876 9999999976554322 111 23444444444444432 3468
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC---HHHH-------Hhh--cch----h---hhhhhhhhcC-----
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSML-------RAE--THK----F---ESRYIDNLVG----- 630 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d---~~~~-------~~~--~~~----~---~~~~~~~~~~----- 630 (732)
+.++|||+||.+++.++. +|+++++++++++... +..+ ... ... . ...+....+.
T Consensus 95 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (295)
T PRK03592 95 VVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSILR 174 (295)
T ss_pred eEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCcccc
Confidence 999999999999999998 9999999999887421 1100 000 000 0 0000010000
Q ss_pred --Chh---hhh-----------------hcCc--------------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 631 --SEK---DYY-----------------EKSP--------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 631 --~~~---~~~-----------------~~sp--------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
.++ .+. ...+ ...+.++++|+|+++|++|..+++....++...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~ 254 (295)
T PRK03592 175 PLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRSW 254 (295)
T ss_pred cCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHHh
Confidence 000 000 0000 0124568899999999999999665555554443
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.. +.++++++++||... .+..+++.+.+.+|+++...
T Consensus 255 ~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 255 PN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred hh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhcc
Confidence 32 458999999999754 46778899999999987653
No 83
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.58 E-value=9.8e-14 Score=140.49 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=123.4
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~ 570 (732)
....|.||++||.+... ..|......|+ .+|.|+++|+||.|..... ..+.. ...+|+.+.++.+
T Consensus 13 ~~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~------~~~~~~~~~~d~~~~l~~l----- 78 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD------PVMNYPAMAQDLLDTLDAL----- 78 (255)
T ss_pred CCCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC------CCCCHHHHHHHHHHHHHHc-----
Confidence 34568899999985443 34555566664 4699999999986543221 11110 1134455555443
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc-CCHH-----HHHh---h-----cchh--hhhhhhhhcC---
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV-ADLS-----MLRA---E-----THKF--ESRYIDNLVG--- 630 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~-~d~~-----~~~~---~-----~~~~--~~~~~~~~~~--- 630 (732)
..+++.++|||+||.+++.++. +|+++++++++++. .+.. .... . .... ...++...+.
T Consensus 79 -~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 79 -QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred -CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 3457999999999999999988 89999999987432 1110 0000 0 0000 0000000000
Q ss_pred ----------C-------h---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 631 ----------S-------E---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 631 ----------~-------~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
. + ..+........+.++++|+|+++|++|..++.+..+.+.+.+. ++++.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 0 0 0111111122355678999999999999998877766665543 56889999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHH
Q 004735 691 HGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl~~ 712 (732)
|.+ ..+..+.+.+.+.+||.+
T Consensus 234 H~~-~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWV-HAEKPDAVLRAIRRYLND 254 (255)
T ss_pred Cee-eccCHHHHHHHHHHHHhc
Confidence 965 446677888888888864
No 84
>PLN00021 chlorophyllase
Probab=99.58 E-value=7e-14 Score=143.26 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=136.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCC
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWG 551 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~ 551 (732)
...+++.++.|.. .+..|+||++||+... ...+...++.|+++||.|+++|++|..+.+ .
T Consensus 36 ~~~~p~~v~~P~~-------~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~ 95 (313)
T PLN00021 36 SPPKPLLVATPSE-------AGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------G 95 (313)
T ss_pred CCCceEEEEeCCC-------CCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------c
Confidence 3567888999975 5678999999998433 445667888999999999999988643211 1
Q ss_pred cccHHHHHHHHHHHHhc--------CCCCCCcEEEEEcChHHHHHHHHHh-CCC-----cceEEEeecCcCCHHHHHhhc
Q 004735 552 IVDVNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-FRD-----TFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 552 ~~~~~D~~~~i~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~p~-----~~~a~v~~~~~~d~~~~~~~~ 617 (732)
..+++|..++++|+.+. ...|.++++|+|||+||++++.++. +++ ++++++.+.|+........ +
T Consensus 96 ~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~-~ 174 (313)
T PLN00021 96 TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQ-T 174 (313)
T ss_pred hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccC-C
Confidence 12356677777777652 2367789999999999999999987 553 6899999888754321000 0
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCC-----c----cChH-HHHHHHHHHHhCCCCEEEEEeC
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK-----V----VPPD-QARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-----~----v~~~-~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.+..+ ... ...-++.+|+|++++..|. . .|.. +..++++..+. +..+.+.+
T Consensus 175 -------------~p~il-~~~--~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~ 235 (313)
T PLN00021 175 -------------PPPVL-TYA--PHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAK 235 (313)
T ss_pred -------------CCccc-ccC--cccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---Ceeeeeec
Confidence 00000 000 1122367999999999763 2 2233 33677776553 77888999
Q ss_pred CCCcc-CCCc---------------------ccHHHHHHHHHHHHHHHhCC
Q 004735 688 GEQHG-FRKA---------------------ENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 688 ~~gH~-~~~~---------------------~~~~~~~~~~~~fl~~~l~~ 716 (732)
++||. +... ..++.....++.||..+|.+
T Consensus 236 ~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~ 286 (313)
T PLN00021 236 DYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEG 286 (313)
T ss_pred CCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcC
Confidence 99995 2111 11233445678999999975
No 85
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.58 E-value=3e-14 Score=136.56 Aligned_cols=191 Identities=18% Similarity=0.135 Sum_probs=118.6
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEcCCCC--CCCChhhHHhhccCCCc
Q 004735 476 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGS--TGYGREFRERLLGRWGI 552 (732)
Q Consensus 476 ~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d~rG~--~g~g~~~~~~~~~~~~~ 552 (732)
.+.+|.|+... ..+.|+||++||+........ ...+.+...++||+|+.|+-... ......|.. .....+.
T Consensus 2 ~Y~lYvP~~~~-----~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~ 75 (220)
T PF10503_consen 2 SYRLYVPPGAP-----RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGG 75 (220)
T ss_pred cEEEecCCCCC-----CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCc
Confidence 46788898621 346899999999854432111 11123333456999999985321 111122222 1222344
Q ss_pred ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhc-C
Q 004735 553 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLV-G 630 (732)
Q Consensus 553 ~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~-~ 630 (732)
.+...+.+.++++.+++.+|++||.+.|+|.||+|+..++. +||+|.++.+++|..--.... ....+ ..+..-. .
T Consensus 76 ~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~-~~~a~--~~m~~g~~~ 152 (220)
T PF10503_consen 76 GDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAAS-GASAL--SAMRSGPRP 152 (220)
T ss_pred cchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccC-cccHH--HHhhCCCCC
Confidence 56777889999999999999999999999999999999988 999999999988864211100 00000 0000000 0
Q ss_pred Chhh-hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 631 SEKD-YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 631 ~~~~-~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
.+.. ........ ..-..|++++||+.|..|.+.++.++.+++...
T Consensus 153 ~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAG--AYPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhcc--CCCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 1111 11111000 011259999999999999999999999988764
No 86
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.58 E-value=1.7e-13 Score=145.36 Aligned_cols=205 Identities=17% Similarity=0.190 Sum_probs=125.6
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|...+..|++ +|.|+++|++|.+...... .. ....++..+.+..++++. ..+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~----~~---~~~~~~~a~~l~~~l~~l--~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPP----GF---SYTMETWAELILDFLEEV--VQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCC----Cc---cccHHHHHHHHHHHHHHh--cCC
Confidence 3779999998543 3456666776754 7999999999766532210 00 122344444443333332 346
Q ss_pred cEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHH------HHHh--------------hc--------c-----h
Q 004735 575 RLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLS------MLRA--------------ET--------H-----K 619 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~------~~~~--------------~~--------~-----~ 619 (732)
++.|+|||+||.+++.++. +|++++++|++++..... .... .. . .
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999988775 699999999888642110 0000 00 0 0
Q ss_pred hhhhhhhhhcC------------------C---hhhhhh-------cCccccCCCCCCCEEEEEeCCCCccChHHH-HHH
Q 004735 620 FESRYIDNLVG------------------S---EKDYYE-------KSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKI 670 (732)
Q Consensus 620 ~~~~~~~~~~~------------------~---~~~~~~-------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~-~~~ 670 (732)
....++..... . ...+.. .+....+.++++|+|+++|++|..+|+... .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00000000000 0 001110 011234567899999999999999988643 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 671 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 671 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++.+.+.-.+.++++++++||.. ..+..+++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 45555444467999999999964 557788999999999875
No 87
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.58 E-value=1.1e-13 Score=142.40 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=124.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||++++.. ..+......+.+.||.|+++|+||.+..... .... ....+++..+.+..++++. +.+
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~---~~~~--~~~~~~~~~~~~~~~~~~~--~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQP---DDSD--ELWTIDYFVDELEEVREKL--GLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCC---Cccc--ccccHHHHHHHHHHHHHHc--CCC
Confidence 477899999855432 2334455555666999999999976543211 0000 0123566666666666553 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcc----hh---hh------------------hhhhhh
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETH----KF---ES------------------RYIDNL 628 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~----~~---~~------------------~~~~~~ 628 (732)
++.++|||+||.+++.++. +|++++++++.++............ .+ .. ......
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEVF 176 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 7999999999999999988 9999999998887543221100000 00 00 000000
Q ss_pred c----C----------------Chhhh---------------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHH
Q 004735 629 V----G----------------SEKDY---------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 673 (732)
Q Consensus 629 ~----~----------------~~~~~---------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~ 673 (732)
. . ....+ ...+....+.++++|+|+++|++|.+ ++.....+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~~ 255 (288)
T TIGR01250 177 YHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQEL 255 (288)
T ss_pred HHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHHh
Confidence 0 0 00000 00011223567889999999999984 66666666555
Q ss_pred HHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 674 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 674 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
+. +.++++++++||.... +...++.+.+.+|++
T Consensus 256 ~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 256 IA----GSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred cc----CCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 43 4578999999997544 567788888888863
No 88
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.57 E-value=3.1e-14 Score=140.71 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=117.6
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEE
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 577 (732)
||++||.+... ..|...+..| ++||.|+++|+||.+....... ......++..+.+..++++.. .+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~~--~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDALG--IKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHTT--TSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhcccccc--ccccc
Confidence 79999984443 6677788888 5899999999998665432211 112334555555555555422 37899
Q ss_pred EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH--h----hcch-----------hhhhhhhhhcC---------
Q 004735 578 ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--A----ETHK-----------FESRYIDNLVG--------- 630 (732)
Q Consensus 578 i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~--~----~~~~-----------~~~~~~~~~~~--------- 630 (732)
++|||+||.+++.++. +|++++++++.+|........ . .... +....+.....
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999998 999999999999988643221 0 0000 00000000000
Q ss_pred C-h----hh----hhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 631 S-E----KD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 631 ~-~----~~----~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
. . +. +...+....+.++++|+++++|++|.+++.....++.+.+. ++++++++++||.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCcc
Confidence 0 0 00 01122334567789999999999999998766666665543 67999999999974
No 89
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.57 E-value=1.9e-14 Score=136.63 Aligned_cols=182 Identities=24% Similarity=0.328 Sum_probs=126.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEEcCCCCCccCCccc------HHHHHHHHCCCEEEEEcCCCCC
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILN------LSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~-P~vl~~HGg~~~~~~~~~~------~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
++|.....|.++.+.+|.|++.+ +++++ |+|||+||++.......-. ..+-..-+-+|-|++|.|.-
T Consensus 163 ~~f~d~~tgneLkYrly~Pkdy~----pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~-- 236 (387)
T COG4099 163 VEFYDESTGNELKYRLYTPKDYA----PDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNP-- 236 (387)
T ss_pred eEeeccccCceeeEEEecccccC----CCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccc--
Confidence 44444447899999999998744 46666 9999999974432221110 01111122356677777531
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
- +.+. ..-.........+.++ -+.+++.+|.+||.++|.|+||+.++.++. +|+.|.++++++|-.|-...
T Consensus 237 i----f~d~--e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~l- 309 (387)
T COG4099 237 I----FADS--EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVYL- 309 (387)
T ss_pred c----cccc--ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhhh-
Confidence 0 0000 0001122344555555 788899999999999999999999999998 99999999999997653211
Q ss_pred hhcchhhhhhhhhhcCChhhhhhcCccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 615 AETHKFESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
.+.+ +.|+.++|+.+|.++|.+++.-++..|+..+.++.+..|.
T Consensus 310 -----------------------------v~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 310 -----------------------------VRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred -----------------------------hhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 1112 4799999999999999999999999999988877777665
No 90
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.56 E-value=1.9e-13 Score=146.59 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=125.2
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccH-HHHHHHHHHHHhcCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDV-NDCCSCATFLVGSGKA 571 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~-~D~~~~i~~l~~~~~~ 571 (732)
..|.||++||.++.. ..|......|++ +|.|+++|+||.+...+.. ..... .+. +.+.+.+..+.+. .
T Consensus 104 ~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~-----~~~~~~~~~~~~~~~~i~~~~~~--l 173 (402)
T PLN02894 104 DAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPD-----FTCKSTEETEAWFIDSFEEWRKA--K 173 (402)
T ss_pred CCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCC-----cccccHHHHHHHHHHHHHHHHHH--c
Confidence 458999999985432 334445566655 5999999999876543221 00000 011 1222233222232 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH---H----HHhhcc-------------------------
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---M----LRAETH------------------------- 618 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~---~----~~~~~~------------------------- 618 (732)
+.+++.|+|||+||++++.++. +|++++++|+.+|..-.. . +.....
T Consensus 174 ~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g 253 (402)
T PLN02894 174 NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGLG 253 (402)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhcc
Confidence 4568999999999999999888 999999999887642110 0 000000
Q ss_pred ----hhhhhhhhhh---------cC--Chhhh--------------------------hhcCcc-ccCCCCCCCEEEEEe
Q 004735 619 ----KFESRYIDNL---------VG--SEKDY--------------------------YEKSPI-NFVDKFSCPIILFQG 656 (732)
Q Consensus 619 ----~~~~~~~~~~---------~~--~~~~~--------------------------~~~sp~-~~~~~i~~P~Lii~G 656 (732)
.+...+.... +. ..+.+ ....++ ..+.++++|+++++|
T Consensus 254 p~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~G 333 (402)
T PLN02894 254 PWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIYG 333 (402)
T ss_pred chhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEEe
Confidence 0000000000 00 00000 001122 336778999999999
Q ss_pred CCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 657 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 657 ~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
++|.+++ ....++.+.+ +.++++++++++||.. ..++.+.+.+.+.+|++.+++..
T Consensus 334 ~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~~~~ 389 (402)
T PLN02894 334 RHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYLSPD 389 (402)
T ss_pred CCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhccCC
Confidence 9998654 4554544433 3357899999999964 44678899999999999999853
No 91
>COG0400 Predicted esterase [General function prediction only]
Probab=99.56 E-value=1.4e-13 Score=130.54 Aligned_cols=186 Identities=21% Similarity=0.175 Sum_probs=127.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH-hhccCCCc----ccHHHHHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-RLLGRWGI----VDVNDCCSCATFLV 566 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~-~~~~~~~~----~~~~D~~~~i~~l~ 566 (732)
++..|+||++||.+ .....+-...+.+ .-.+.++.+.-+-.-..+..|.. .....+.. ...+.+.+.++.+.
T Consensus 15 ~p~~~~iilLHG~G--gde~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 15 DPAAPLLILLHGLG--GDELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred CCCCcEEEEEecCC--CChhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 45678999999974 3333333322222 22355555543211111111110 01111111 12344556677777
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCC
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 645 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 645 (732)
++..+|.+|++++|+|.|+.+++.++. +|+.++++++++|..-+... ....
T Consensus 92 ~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------------------~~~~ 143 (207)
T COG0400 92 EEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------------------LLPD 143 (207)
T ss_pred HHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc----------------------------cccc
Confidence 788899999999999999999999988 99999999999997543210 0011
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.-.+|+|++||+.|++||...+.++.+.|++.|.+++.++++ .||.+. .+.++.+.+|+.+.+
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~~ 206 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANTL 206 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhcc
Confidence 224899999999999999999999999999999999999999 799875 466778888988764
No 92
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.56 E-value=5.5e-14 Score=140.87 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=121.3
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+. ....|......|. .+|.|+++|+||.+..... ...+.+++.+ .+.+.. .+
T Consensus 4 ~~~iv~~HG~~~--~~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~~~~~---~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGM--NAEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLADAAE---AIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCC--chhhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHHHHHH---HHHHhC---CC
Confidence 378999999743 3445666677665 4699999999986653211 1123444443 333331 26
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-----------HHhh----c----chhhhhhhh-hhcC---
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-----------LRAE----T----HKFESRYID-NLVG--- 630 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-----------~~~~----~----~~~~~~~~~-~~~~--- 630 (732)
++.++|||+||++++.++. +|++++++|++++...+.. .... . ......+.. ...+
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 8999999999999999988 9999999998866432100 0000 0 000000000 0000
Q ss_pred ----------------Ch--h-------hhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 631 ----------------SE--K-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 631 ----------------~~--~-------~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
.+ . .+...+....+.++++|+|+++|++|..++++..+.+.+.++ ++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 00 0 000111123357889999999999999999988777766554 568999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++||.... +..+++.+.+.+|+
T Consensus 222 ~~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 222 FAKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred eCCCCCCccc-cCHHHHHHHHHhhC
Confidence 9999997543 56778888887774
No 93
>PRK07581 hypothetical protein; Validated
Probab=99.56 E-value=1.3e-13 Score=145.79 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=126.8
Q ss_pred CCCEEEEEcCCCCCccCCcccHHH---HHHHHCCCEEEEEcCCCCCCCChhhHH---hhccCCCccc-HHHHHHHHHHHH
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGSTGYGREFRE---RLLGRWGIVD-VNDCCSCATFLV 566 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~---~~l~~~G~~v~~~d~rG~~g~g~~~~~---~~~~~~~~~~-~~D~~~~i~~l~ 566 (732)
+.|+||++||+++.... +.+.. ..|...+|.|+++|+||.+........ .....+.... .+|+.+....+.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 45778888886543322 22222 245567899999999987654322110 0001111112 344544444455
Q ss_pred hcCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--------HH---hhc----------------
Q 004735 567 GSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--------LR---AET---------------- 617 (732)
Q Consensus 567 ~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--------~~---~~~---------------- 617 (732)
+... .+++ .|+||||||++++.++. +|++++.+|++++...... .. ...
T Consensus 118 ~~lg--i~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (339)
T PRK07581 118 EKFG--IERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGL 195 (339)
T ss_pred HHhC--CCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 5433 3684 78999999999999998 9999999998865432100 00 000
Q ss_pred ----chh-----hhhhhh---------------------hhcC--Chhhhhh-------c----------CccccCCCCC
Q 004735 618 ----HKF-----ESRYID---------------------NLVG--SEKDYYE-------K----------SPINFVDKFS 648 (732)
Q Consensus 618 ----~~~-----~~~~~~---------------------~~~~--~~~~~~~-------~----------sp~~~~~~i~ 648 (732)
..+ ...++. .... ++..+.. . +....+.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~ 275 (339)
T PRK07581 196 RAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSIT 275 (339)
T ss_pred HHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCC
Confidence 000 000000 0000 0000000 0 1112356789
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
+|+|+++|++|..+|+..++.+.+.+. ..+++++++ +||.. ..+...++...+.+|+++++.
T Consensus 276 ~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~-~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 276 AKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLA-GFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccc-cccCcHHHHHHHHHHHHHHHh
Confidence 999999999999999988888777664 358999998 89954 346667888899999998874
No 94
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.56 E-value=1e-13 Score=140.50 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=122.1
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+ .....|......|.+ .|.|+++|+||.+.... . .....+++.+ .+.+. ..
T Consensus 12 g~~~ivllHG~~--~~~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~------~---~~~~~~~~~~---~l~~~---~~ 73 (256)
T PRK10349 12 GNVHLVLLHGWG--LNAEVWRCIDEELSS-HFTLHLVDLPGFGRSRG------F---GALSLADMAE---AVLQQ---AP 73 (256)
T ss_pred CCCeEEEECCCC--CChhHHHHHHHHHhc-CCEEEEecCCCCCCCCC------C---CCCCHHHHHH---HHHhc---CC
Confidence 346799999974 334566677777754 59999999997654321 1 1122344433 33332 24
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH------H--------HHHh----hcchhhhhhhhh-hcCC--
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL------S--------MLRA----ETHKFESRYIDN-LVGS-- 631 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~------~--------~~~~----~~~~~~~~~~~~-~~~~-- 631 (732)
+++.++|||+||++++.++. +|+++++++++++.... . .+.. ........++.. ..+.
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTET 153 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCch
Confidence 78999999999999999988 99999999988763210 0 0000 000000011100 0000
Q ss_pred -------------------h-------hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 632 -------------------E-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 632 -------------------~-------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
. ..+...+....+.++++|+|+++|++|.++|.+.+..+.+.++ +.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~ 229 (256)
T PRK10349 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 229 (256)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEE
Confidence 0 0011112223466789999999999999999877766666554 558999
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 686 YEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 686 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
++++||.. ..++.+.+.+.+.+|-+
T Consensus 230 i~~~gH~~-~~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 230 FAKAAHAP-FISHPAEFCHLLVALKQ 254 (256)
T ss_pred eCCCCCCc-cccCHHHHHHHHHHHhc
Confidence 99999965 44677778777777643
No 95
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.56 E-value=1.4e-13 Score=143.03 Aligned_cols=220 Identities=15% Similarity=0.091 Sum_probs=131.8
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHH
Q 004735 465 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 544 (732)
Q Consensus 465 ~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~ 544 (732)
.+... +|.++++..+.+ ...+.||++||++..... ......+...+|.|+++|+||.+.....
T Consensus 8 ~~~~~-~~~~l~y~~~g~----------~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~--- 70 (306)
T TIGR01249 8 YLNVS-DNHQLYYEQSGN----------PDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH--- 70 (306)
T ss_pred eEEcC-CCcEEEEEECcC----------CCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC---
Confidence 45554 677787544321 113568999998655322 1233445567899999999976543211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----HH-------
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----SM------- 612 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----~~------- 612 (732)
.. ......+|+.+.+..+.++. +.+++.++|||+||++++.++. +|++++++|+.++.... ..
T Consensus 71 ~~---~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 145 (306)
T TIGR01249 71 AC---LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGAS 145 (306)
T ss_pred CC---cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchh
Confidence 00 01123556666667666653 3468999999999999999988 99999998887654311 00
Q ss_pred ---------HHhhc------chhhhhhhhhhcCCh--------hh---hh-------------------------h----
Q 004735 613 ---------LRAET------HKFESRYIDNLVGSE--------KD---YY-------------------------E---- 637 (732)
Q Consensus 613 ---------~~~~~------~~~~~~~~~~~~~~~--------~~---~~-------------------------~---- 637 (732)
+.... ..+...+........ +. +. .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (306)
T TIGR01249 146 MIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENH 225 (306)
T ss_pred hhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHh
Confidence 00000 000000000000000 00 00 0
Q ss_pred ------cC-----ccccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHH
Q 004735 638 ------KS-----PINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 705 (732)
Q Consensus 638 ------~s-----p~~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~ 705 (732)
.. -...+.++ ++|+|++||++|.++|+..+.++++.+. +.++++++++||....+ ..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~----~~~~~ 297 (306)
T TIGR01249 226 YFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHSAFDP----NNLAA 297 (306)
T ss_pred HHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCCCCCh----HHHHH
Confidence 00 01234556 5899999999999999999888888764 45899999999986543 34566
Q ss_pred HHHHHHHHh
Q 004735 706 QMVFFARVV 714 (732)
Q Consensus 706 ~~~fl~~~l 714 (732)
+.+|+..+|
T Consensus 298 i~~~~~~~~ 306 (306)
T TIGR01249 298 LVHALETYL 306 (306)
T ss_pred HHHHHHHhC
Confidence 666666654
No 96
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.55 E-value=1.1e-13 Score=138.91 Aligned_cols=198 Identities=16% Similarity=0.162 Sum_probs=121.0
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 574 (732)
|.||++||.+. ....|......|+ .||.|+++|+||.+..... ......+.++.... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~--~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLG--SGADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCC--chhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 78999999743 3345667778887 8999999999986554221 11111234555544 5555544 2457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh------------------cchhhhhhhhh-h------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE------------------THKFESRYIDN-L------ 628 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~------------------~~~~~~~~~~~-~------ 628 (732)
++.++|||+||.+++.++. +|+.++++++.++...+...... ...+...+... .
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999998 99999999998875432110000 00000000000 0
Q ss_pred cC--------------Ch----hhhh------hcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 629 VG--------------SE----KDYY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 629 ~~--------------~~----~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
.. .. ..+. ..+....+.++++|+|+++|++|..++ ... +.+.+...+.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~----~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIA----KEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HHH----HHHHhcCCCCcEE
Confidence 00 00 0000 011223356788999999999997653 222 3344444467899
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 685 EYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 685 ~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
+++++||.+.. ++.+.+.+.+.+|+
T Consensus 226 ~~~~~gH~~~~-e~~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHL-ENPEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCc-cChHHHHHHHHHHh
Confidence 99999996543 55567777777776
No 97
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.54 E-value=2.2e-13 Score=144.39 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=138.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC---------cccHHH---HHHHHCCCEEEEEcCCCC-CC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---------ILNLSI---QYWTSRGWAFVDVNYGGS-TG 537 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~---------~~~~~~---~~l~~~G~~v~~~d~rG~-~g 537 (732)
+|.++++..+-+.+ ....|.||++||.+.+.... .|...+ ..|...+|.|+++|+||. .|
T Consensus 14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g 86 (351)
T TIGR01392 14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYG 86 (351)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCC
Confidence 56677766665532 12347899999975543221 233332 245578999999999983 22
Q ss_pred -CChhhHH-hh---ccCCCcccHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH
Q 004735 538 -YGREFRE-RL---LGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 610 (732)
Q Consensus 538 -~g~~~~~-~~---~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~ 610 (732)
.+.+-.. .. ..+.....++|..+.+..++++.. .++ +.|+||||||.+++.++. +|++++++|++++....
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 164 (351)
T TIGR01392 87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLG--IEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARH 164 (351)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcC--CCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcC
Confidence 2211000 00 001112456777777766666543 357 999999999999999988 99999999998875431
Q ss_pred HH----HH----hhc---c---------------hhh-hh------h-----hhhhcC----------------------
Q 004735 611 SM----LR----AET---H---------------KFE-SR------Y-----IDNLVG---------------------- 630 (732)
Q Consensus 611 ~~----~~----~~~---~---------------~~~-~~------~-----~~~~~~---------------------- 630 (732)
.. +. ... . ... .. + +...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 244 (351)
T TIGR01392 165 SAWCIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESY 244 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHH
Confidence 11 00 000 0 000 00 0 000000
Q ss_pred ------------Chh-------hhhhcCc-------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEE
Q 004735 631 ------------SEK-------DYYEKSP-------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 684 (732)
Q Consensus 631 ------------~~~-------~~~~~sp-------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~ 684 (732)
++. .+...+. ...+++|++|+|+++|++|.++|+..++++.+.++.....++++
T Consensus 245 ~~~~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~ 324 (351)
T TIGR01392 245 LRYQGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYV 324 (351)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEE
Confidence 000 0011110 13456788999999999999999999999999998654444444
Q ss_pred Ee-CCCCccCCCcccHHHHHHHHHHHHH
Q 004735 685 EY-EGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 685 ~~-~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.+ +++||... .+..+++.+.+.+||+
T Consensus 325 ~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 325 EIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred EeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 44 68999643 3667788888888863
No 98
>PRK06489 hypothetical protein; Provisional
Probab=99.54 E-value=3.1e-13 Score=143.66 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHH-------HHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHH-HHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYW-------TSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLV 566 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l-------~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~ 566 (732)
.|.||++||++.+...+........+ ...+|.|+++|+||.+...... ...........++++.+.+ ..+.
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~l~ 147 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRLVT 147 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHHHH
Confidence 47899999986543322111222222 2568999999999876432110 0000001123456665443 3344
Q ss_pred hcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCC--------HHHH-Hh---hcc-----h------hh
Q 004735 567 GSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--------LSML-RA---ETH-----K------FE 621 (732)
Q Consensus 567 ~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d--------~~~~-~~---~~~-----~------~~ 621 (732)
++.. .+++. |+||||||++++.++. +|++++++|++++... .... .. ... . ..
T Consensus 148 ~~lg--i~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (360)
T PRK06489 148 EGLG--VKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSL 225 (360)
T ss_pred HhcC--CCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHH
Confidence 4432 35774 8999999999999998 9999999998876421 0000 00 000 0 00
Q ss_pred h----h------------------------hhhhhcC-----Chhhhh-------hcCccccCCCCCCCEEEEEeCCCCc
Q 004735 622 S----R------------------------YIDNLVG-----SEKDYY-------EKSPINFVDKFSCPIILFQGLEDKV 661 (732)
Q Consensus 622 ~----~------------------------~~~~~~~-----~~~~~~-------~~sp~~~~~~i~~P~Lii~G~~D~~ 661 (732)
. . ++..... +...+. ..+....+.+|++|+|+++|++|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~ 305 (360)
T PRK06489 226 KRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDER 305 (360)
T ss_pred HHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcc
Confidence 0 0 0000000 011110 1112234668899999999999999
Q ss_pred cChHHH--HHHHHHHHhCCCCEEEEEeCCC----CccCCCcccHHHHHHHHHHHHHHHh
Q 004735 662 VPPDQA--RKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 662 v~~~~~--~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+|++.+ +.+.+.+. +.++++++++ ||.. . +..+.+.+.+.+||+++-
T Consensus 306 ~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~-~-e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 306 NPPETGVMEAALKRVK----HGRLVLIPASPETRGHGT-T-GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred cChhhHHHHHHHHhCc----CCeEEEECCCCCCCCccc-c-cCHHHHHHHHHHHHHhcc
Confidence 998765 56666554 4589999996 9976 4 688889999999987654
No 99
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.53 E-value=2.2e-13 Score=122.11 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=136.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCC---ccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTS---EARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~---~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
+.+.+..+ -.++.+. +.|.. .+..|+.|.+|--|.. .........+..|.++||+++.+||||-+++
T Consensus 5 ~~v~i~Gp--~G~le~~-~~~~~-------~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S 74 (210)
T COG2945 5 PTVIINGP--AGRLEGR-YEPAK-------TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS 74 (210)
T ss_pred CcEEecCC--cccceec-cCCCC-------CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc
Confidence 34556654 2334433 34433 3567899998875532 3333344567788999999999999997765
Q ss_pred ChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc
Q 004735 539 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET 617 (732)
Q Consensus 539 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~ 617 (732)
..+|. .|..+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++. .|+ ....++..|..+...+
T Consensus 75 ~G~fD------~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~df---- 142 (210)
T COG2945 75 QGEFD------NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYDF---- 142 (210)
T ss_pred cCccc------CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchhh----
Confidence 55443 355679999999999998842 3333478999999999999998 555 5666666666541110
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
..+....+|.++++|+.|.++.+....+..+. .+.+++++++++|.|..
T Consensus 143 ------------------------s~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~g-- 191 (210)
T COG2945 143 ------------------------SFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHG-- 191 (210)
T ss_pred ------------------------hhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecc--
Confidence 12334457899999999999988777776554 46689999999997753
Q ss_pred cHHHHHHHHHHHHH
Q 004735 698 NIKFTLEQQMVFFA 711 (732)
Q Consensus 698 ~~~~~~~~~~~fl~ 711 (732)
......+.+.+|+.
T Consensus 192 Kl~~l~~~i~~~l~ 205 (210)
T COG2945 192 KLIELRDTIADFLE 205 (210)
T ss_pred cHHHHHHHHHHHhh
Confidence 34566667777774
No 100
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.52 E-value=5.1e-13 Score=133.83 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=164.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+|+|+|+... +||.+++.+ +++++||.+ ---.+.+.|+|||++|+|++-..+... ...+||+++.++|+
T Consensus 50 GD~IiFt~~D--dlWe~slk~--g~~~ritS~----lGVvnn~kf~pdGrkvaf~rv~~~ss~--~taDly~v~~e~Ge- 118 (668)
T COG4946 50 GDRIIFTCCD--DLWEYSLKD--GKPLRITSG----LGVVNNPKFSPDGRKVAFSRVMLGSSL--QTADLYVVPSEDGE- 118 (668)
T ss_pred CcEEEEEech--HHHHhhhcc--CCeeEEecc----cceeccccCCCCCcEEEEEEEEecCCC--ccccEEEEeCCCCc-
Confidence 6799999644 499999998 999999987 234577899999999999654332211 14799999999999
Q ss_pred cccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 234 QEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 234 ~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
++++| -|..|..-.-|+|||+-|+++..-.+-..| +.||.+..+ +++...+.+.+. ... .-.||
T Consensus 119 --~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~--~~lYkv~~d-g~~~e~LnlGpa---------thi-v~~dg 183 (668)
T COG4946 119 --AKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQW--TELYKVNVD-GIKTEPLNLGPA---------THI-VIKDG 183 (668)
T ss_pred --EEEEEEeccccceeeccCCCCCEEEEeccCCCcccc--eeeeEEccC-CceeeeccCCce---------eeE-EEeCC
Confidence 89998 344454556799999988877644433223 468888877 554422221111 112 22566
Q ss_pred cEEEEEec---------cCC-eeeEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 313 ELFFVTDR---------KNG-FWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 313 ~l~~~~~~---------~~g-~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
.++.-.+. +.| ...||. ..++| ..+.+...+..++.|.-+ ++++||.++.+|..
T Consensus 184 ~ivigRntydLP~WK~YkGGtrGklWi-s~d~g~tFeK~vdl~~~vS~PmIV--------------~~RvYFlsD~eG~G 248 (668)
T COG4946 184 IIVIGRNTYDLPHWKGYKGGTRGKLWI-SSDGGKTFEKFVDLDGNVSSPMIV--------------GERVYFLSDHEGVG 248 (668)
T ss_pred EEEEccCcccCcccccccCCccceEEE-EecCCcceeeeeecCCCcCCceEE--------------cceEEEEecccCcc
Confidence 43332221 012 234664 34444 566666665555555533 57899999999999
Q ss_pred EEEEEECCCCceEEeccC-CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 382 YLGILDDFGHSLSLLDIP-FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~-~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
+||.+|++++.+++-|.- +.....+..++++++|..++ .||++|.++..+++|.
T Consensus 249 nlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~G-----dIylydP~td~lekld 303 (668)
T COG4946 249 NLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAG-----DIYLYDPETDSLEKLD 303 (668)
T ss_pred ceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCC-----cEEEeCCCcCcceeee
Confidence 999999999999888763 33344556778888887763 6999999998887775
No 101
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.52 E-value=4.3e-13 Score=143.27 Aligned_cols=217 Identities=16% Similarity=0.194 Sum_probs=134.4
Q ss_pred CCEEEEEcCCCCCccCCc-----------ccHHH---HHHHHCCCEEEEEcCCCC-CCC-ChhhHHh-----hccCCCcc
Q 004735 495 PPLLVKSHGGPTSEARGI-----------LNLSI---QYWTSRGWAFVDVNYGGS-TGY-GREFRER-----LLGRWGIV 553 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~-----------~~~~~---~~l~~~G~~v~~~d~rG~-~g~-g~~~~~~-----~~~~~~~~ 553 (732)
.|.||++||.+.+..... |..++ ..+...+|.|+++|++|. ++. +.+.... ....+...
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~ 127 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVI 127 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcC
Confidence 589999999865543211 22222 133356899999999983 222 1110000 00011234
Q ss_pred cHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH----HH-------hhcch-
Q 004735 554 DVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM----LR-------AETHK- 619 (732)
Q Consensus 554 ~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~----~~-------~~~~~- 619 (732)
.++|..+.+..++++.. .++ +.++||||||.+++.++. +|++++++|++++...... +. .....
T Consensus 128 ~~~~~~~~~~~~l~~l~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 205 (379)
T PRK00175 128 TIRDWVRAQARLLDALG--ITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSAQNIAFNEVARQAILADPDW 205 (379)
T ss_pred CHHHHHHHHHHHHHHhC--CCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCHHHHHHHHHHHHHHHhCCCC
Confidence 56777777777766643 356 589999999999999988 9999999999886542110 00 00000
Q ss_pred -----------------hhh-----hh-----hhhhcC---------------------------------Chhhhh---
Q 004735 620 -----------------FES-----RY-----IDNLVG---------------------------------SEKDYY--- 636 (732)
Q Consensus 620 -----------------~~~-----~~-----~~~~~~---------------------------------~~~~~~--- 636 (732)
... .+ +...+. ++..|.
T Consensus 206 ~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~ 285 (379)
T PRK00175 206 HGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLRYQGDKFVERFDANSYLYLT 285 (379)
T ss_pred CCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHHHHHHHHhhccCchHHHHHH
Confidence 000 00 000000 000000
Q ss_pred ----hcC--------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC-CCCccCCCcccHHHHH
Q 004735 637 ----EKS--------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE-GEQHGFRKAENIKFTL 703 (732)
Q Consensus 637 ----~~s--------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~gH~~~~~~~~~~~~ 703 (732)
..+ -...+.+|++|+|+++|++|.++|++.++++.+.+...+..+++++++ ++||... .+...++.
T Consensus 286 ~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~ 364 (379)
T PRK00175 286 RALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYG 364 (379)
T ss_pred HHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHH
Confidence 000 012346789999999999999999999999999998877677888775 8999643 36667888
Q ss_pred HHHHHHHHHHh
Q 004735 704 EQQMVFFARVV 714 (732)
Q Consensus 704 ~~~~~fl~~~l 714 (732)
+.+.+||.+.-
T Consensus 365 ~~L~~FL~~~~ 375 (379)
T PRK00175 365 RLVRAFLERAA 375 (379)
T ss_pred HHHHHHHHhhh
Confidence 88899988754
No 102
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.51 E-value=1.1e-12 Score=134.80 Aligned_cols=199 Identities=17% Similarity=0.119 Sum_probs=122.1
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+. ....|......|. ++|.|+++|+||.+..+... . .....++..+.+..++++. +.+
T Consensus 34 ~~~iv~lHG~~~--~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~------~-~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPT--WSFLYRDIIVALR-DRFRCVAPDYLGFGLSERPS------G-FGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCc--cHHHHHHHHHHHh-CCcEEEEECCCCCCCCCCCC------c-cccCHHHHHHHHHHHHHHh--CCC
Confidence 378999999853 2334555666664 46999999999876543211 0 0134677777777777763 446
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH----H--HH---Hhhcc---h------hhhhhhhhhc-C--Ch
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----S--ML---RAETH---K------FESRYIDNLV-G--SE 632 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~----~--~~---~~~~~---~------~~~~~~~~~~-~--~~ 632 (732)
++.++|||+||.+++.++. +|++++++|+.++..-. . .+ ..... . +...++.... . ..
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSS 181 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCH
Confidence 8999999999999999887 99999999987664310 0 00 00000 0 0000000000 0 00
Q ss_pred ---hhhhh--------------------cCc-ccc----CC--CCCCCEEEEEeCCCCccChH-HHHHHHHHHHhCCCCE
Q 004735 633 ---KDYYE--------------------KSP-INF----VD--KFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLPV 681 (732)
Q Consensus 633 ---~~~~~--------------------~sp-~~~----~~--~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g~~~ 681 (732)
..+.. ..+ +.. +. .+++|+|+++|++|..+++. ..+.+.+.+. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~ 257 (286)
T PRK03204 182 AVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFP----DH 257 (286)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcC----CC
Confidence 00000 000 000 11 12799999999999988655 3455555554 45
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++++++||.. ..+..+++.+.+.+||
T Consensus 258 ~~~~i~~aGH~~-~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 258 VLVELPNAKHFI-QEDAPDRIAAAIIERF 285 (286)
T ss_pred eEEEcCCCcccc-cccCHHHHHHHHHHhc
Confidence 899999999975 4477788888888886
No 103
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=5e-13 Score=128.54 Aligned_cols=233 Identities=22% Similarity=0.213 Sum_probs=144.0
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCCCEEEEEc-CCCCC---C
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVN-YGGST---G 537 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G~~v~~~d-~rG~~---g 537 (732)
..+|.. +|...++++|.|... ..+.|+||++||+.++..... ...+-......||.|+.|| +.+.. +
T Consensus 37 ~~s~~~--~g~~r~y~l~vP~g~------~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~ 108 (312)
T COG3509 37 VASFDV--NGLKRSYRLYVPPGL------PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDGYDRAWNANG 108 (312)
T ss_pred cccccc--CCCccceEEEcCCCC------CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCccccccCCCc
Confidence 345555 688889999999873 445599999999754432221 1122333445699999996 33221 0
Q ss_pred CChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh
Q 004735 538 YGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE 616 (732)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~ 616 (732)
.+..+. .....-+..++..+.+++..|+.++.+|++||.|.|.|.||.|+.++++ +|++|.++..+++......-...
T Consensus 109 ~~~~~~-p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~ 187 (312)
T COG3509 109 CGNWFG-PADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTP 187 (312)
T ss_pred ccccCC-cccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCC
Confidence 111110 1111224456888999999999999999999999999999999999999 99999999998886521100000
Q ss_pred cchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhC-------------------
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN------------------- 677 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~------------------- 677 (732)
.+-+..+. .--..+|..-...=..| |.+|..|..++..+..+..+.+...
T Consensus 188 -----~rp~~~m~----~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~~ 256 (312)
T COG3509 188 -----PRPVSVMA----FHGTADPLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDGTDYD 256 (312)
T ss_pred -----CCchhHHH----hcCCCCCCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCcccceee
Confidence 00000000 00012222222222234 7888888877666555555554322
Q ss_pred ----CCCEEEEEeCCCCccCCCccc-----------HHHHHHHHHHHHHHHhC
Q 004735 678 ----GLPVALVEYEGEQHGFRKAEN-----------IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 ----g~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~fl~~~l~ 715 (732)
+..++++.+.+.||.+..... -....+.+.+||.++-+
T Consensus 257 ~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~R 309 (312)
T COG3509 257 TCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHRR 309 (312)
T ss_pred ccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhccc
Confidence 246889999999998754222 12356778888887654
No 104
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.50 E-value=5.3e-14 Score=141.73 Aligned_cols=213 Identities=21% Similarity=0.210 Sum_probs=114.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC----------------CcccHHHHHHHHC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR----------------GILNLSIQYWTSR 523 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~----------------~~~~~~~~~l~~~ 523 (732)
+.|.+.|... ++..++++++.|++ ..++.|.||++||-+..-.. .........|+++
T Consensus 87 ~~EKv~f~~~-p~~~vpaylLvPd~------~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 87 TREKVEFNTT-PGSRVPAYLLVPDG------AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred EEEEEEEEcc-CCeeEEEEEEecCC------CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4578889887 89999999999987 25678999999984221100 0012357789999
Q ss_pred CCEEEEEcCCCCCCCChhh---------HHhh-------ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHH
Q 004735 524 GWAFVDVNYGGSTGYGREF---------RERL-------LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (732)
Q Consensus 524 G~~v~~~d~rG~~g~g~~~---------~~~~-------~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~ 587 (732)
||+|+++|..|-+..+..- ...+ -..+......|...+++||.+++.+|++||+++|+|+||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999988754432210 0000 01112223556777999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEeecCcCCHHHHHhh-c---c----hh---hhhhhhhhcCChhhhhhcCccccCCCC-CCCEEEEE
Q 004735 588 TLAALAFRDTFKAGASLYGVADLSMLRAE-T---H----KF---ESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQ 655 (732)
Q Consensus 588 a~~~~~~p~~~~a~v~~~~~~d~~~~~~~-~---~----~~---~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~ 655 (732)
++++++-.++|+++|+.+-+......... + . .+ ...++..++...+ +. .-++-+ ..|+|++.
T Consensus 240 a~~LaALDdRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D----~P--dIasliAPRPll~~n 313 (390)
T PF12715_consen 240 AWWLAALDDRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFD----FP--DIASLIAPRPLLFEN 313 (390)
T ss_dssp HHHHHHH-TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC------HH--HHHHTTTTS-EEESS
T ss_pred HHHHHHcchhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCc----cH--HHHHHhCCCcchhhc
Confidence 99999988889998887665444321100 0 0 00 0112222221000 00 001112 36899999
Q ss_pred eCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 656 GLEDKVVPPDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 656 G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
|..|..+|. .++-|+... ..-+++++.||+
T Consensus 314 G~~Dklf~i--V~~AY~~~~-~p~n~~~~~~p~ 343 (390)
T PF12715_consen 314 GGKDKLFPI--VRRAYAIMG-APDNFQIHHYPK 343 (390)
T ss_dssp -B-HHHHHH--HHHHHHHTT--GGGEEE---GG
T ss_pred CCcccccHH--HHHHHHhcC-CCcceEEeeccc
Confidence 999988755 334444322 234688888885
No 105
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.49 E-value=7.7e-13 Score=140.09 Aligned_cols=205 Identities=12% Similarity=0.112 Sum_probs=129.8
Q ss_pred EEEEEcCCCCCcc---CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 497 LLVKSHGGPTSEA---RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 497 ~vl~~HGg~~~~~---~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.||++||...... .......+.+|+++||.|+++|++|.+. +.. ...+.....+|+.++++++.++. ..
T Consensus 64 pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~---s~~---~~~~~d~~~~~~~~~v~~l~~~~--~~ 135 (350)
T TIGR01836 64 PLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDR---ADR---YLTLDDYINGYIDKCVDYICRTS--KL 135 (350)
T ss_pred cEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCH---HHh---cCCHHHHHHHHHHHHHHHHHHHh--CC
Confidence 3888898521111 1123568899999999999999986432 111 00111111345788899998874 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH----h---h------------cc------------h--
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR----A---E------------TH------------K-- 619 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~----~---~------------~~------------~-- 619 (732)
+++.++|||+||.+++.++. +|++++++++.++..++.... . . .. .
T Consensus 136 ~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~ 215 (350)
T TIGR01836 136 DQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFS 215 (350)
T ss_pred CcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcch
Confidence 68999999999999999887 999999999998876542100 0 0 00 0
Q ss_pred -hhhhhhh--hhcCChh---hhh------h-cCc-----------------------------cccCCCCCCCEEEEEeC
Q 004735 620 -FESRYID--NLVGSEK---DYY------E-KSP-----------------------------INFVDKFSCPIILFQGL 657 (732)
Q Consensus 620 -~~~~~~~--~~~~~~~---~~~------~-~sp-----------------------------~~~~~~i~~P~Lii~G~ 657 (732)
....+.. ....+++ .|. . ..+ ...++++++|+|+++|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~ 295 (350)
T TIGR01836 216 LGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAE 295 (350)
T ss_pred hhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecC
Confidence 0000000 0001110 000 0 000 11255688999999999
Q ss_pred CCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHH
Q 004735 658 EDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF--RKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 658 ~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~--~~~~~~~~~~~~~~~fl~~ 712 (732)
+|.++|+..+..+++.+.. ..+++++++ +||.. ..+...++++..+.+||.+
T Consensus 296 ~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 296 RDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 9999999999988887754 356888888 46753 2334567889999999875
No 106
>PLN02578 hydrolase
Probab=99.49 E-value=5.4e-13 Score=141.44 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc-cHHHHHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 574 (732)
|.||++||.+.+ ...|......|+ .+|.|+++|++|.+.+..... .+... ..+|+.+.++.+. .+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------KE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------cC
Confidence 558899997443 344555566665 469999999998765443211 11110 1234444444432 36
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH------------------H-HHhhcc----hh----------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------------M-LRAETH----KF---------- 620 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~------------------~-~~~~~~----~~---------- 620 (732)
++.++|||+||++++.++. +|+++++++++++...+. . ...... ..
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998 999999999886532110 0 000000 00
Q ss_pred ----hhhhhhhhcC------------------Ch---hh-hh----------hcCccccCCCCCCCEEEEEeCCCCccCh
Q 004735 621 ----ESRYIDNLVG------------------SE---KD-YY----------EKSPINFVDKFSCPIILFQGLEDKVVPP 664 (732)
Q Consensus 621 ----~~~~~~~~~~------------------~~---~~-~~----------~~sp~~~~~~i~~P~Lii~G~~D~~v~~ 664 (732)
........+. ++ +. +. ..+....++++++|+|+++|++|.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0000000000 00 00 00 0111223567899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 665 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 665 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..+.++.+.+. +.+++++ ++||.. ..+..+++.+.+.+|++
T Consensus 313 ~~~~~l~~~~p----~a~l~~i-~~GH~~-~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYP----DTTLVNL-QAGHCP-HDEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCC----CCEEEEe-CCCCCc-cccCHHHHHHHHHHHHh
Confidence 88887777654 3477778 589965 45778888899999875
No 107
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.49 E-value=8.3e-13 Score=141.76 Aligned_cols=198 Identities=13% Similarity=0.136 Sum_probs=122.9
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+.. ...|......|.. +|.|+++|++|.+..... ....+.+++.+.+..++++ ++.
T Consensus 130 ~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~ 196 (371)
T PRK14875 130 DGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGI 196 (371)
T ss_pred CCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCC
Confidence 35789999997433 3445555666654 599999999976654211 0123466777777666665 345
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH--------HHhh-cchhhhhhhhhhcC-------------
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--------LRAE-THKFESRYIDNLVG------------- 630 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~--------~~~~-~~~~~~~~~~~~~~------------- 630 (732)
.+++++|||+||++++.++. +|++++++++.+|...... +... .......++...+.
T Consensus 197 ~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (371)
T PRK14875 197 ERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDL 276 (371)
T ss_pred ccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHH
Confidence 68999999999999998888 8999999999887532110 0000 00000000000000
Q ss_pred -------C-hhhh------------hhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 631 -------S-EKDY------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 631 -------~-~~~~------------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
. ...+ ...+....+.++++|+|+++|++|..+|+.++..+. ..+++.+++++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~g 349 (371)
T PRK14875 277 LKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGAG 349 (371)
T ss_pred HHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCCC
Confidence 0 0000 001112245678999999999999999987665432 146889999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHH
Q 004735 691 HGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl~~ 712 (732)
|... -++.+.+.+.+.+||++
T Consensus 350 H~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 350 HMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred CChh-hhCHHHHHHHHHHHhcc
Confidence 9653 35556666667777653
No 108
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.49 E-value=4e-12 Score=126.68 Aligned_cols=215 Identities=13% Similarity=0.195 Sum_probs=133.4
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC--CcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 463 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--GILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 463 ~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
.+.++++ ...+.++++.|.. .++.|+||++||.+..... ..+...+..|+++||.|+++|+||.+....
T Consensus 2 ~~~l~~~--~g~~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g 72 (266)
T TIGR03101 2 PFFLDAP--HGFRFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAG 72 (266)
T ss_pred CEEecCC--CCcEEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 3556664 4446678887764 3446899999997433222 234456788999999999999998654322
Q ss_pred hhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcch
Q 004735 541 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK 619 (732)
Q Consensus 541 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~ 619 (732)
.... ..+. ...+|+.++++++.+.+ ..+++++|||+||.+++.++. +|++++++|+.+|+.+...+....-.
T Consensus 73 ~~~~---~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lr 145 (266)
T TIGR03101 73 DFAA---ARWD-VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLR 145 (266)
T ss_pred cccc---CCHH-HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHH
Confidence 2111 1111 12688889999998763 468999999999999998887 89999999999998875544332111
Q ss_pred hhh--hh-----------hh-hhc--------C---ChhhhhhcCccccCCC--CCCCEEEEEeCCC-CccChHHHHHHH
Q 004735 620 FES--RY-----------ID-NLV--------G---SEKDYYEKSPINFVDK--FSCPIILFQGLED-KVVPPDQARKIY 671 (732)
Q Consensus 620 ~~~--~~-----------~~-~~~--------~---~~~~~~~~sp~~~~~~--i~~P~Lii~G~~D-~~v~~~~~~~~~ 671 (732)
+.. +. +. ... | .++.-....-+..... -..++|++.-..+ .-.......++.
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (266)
T TIGR03101 146 LRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPKNCPVHWFEVRPEEGATLSPVFSRLG 225 (266)
T ss_pred HHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCCCCceEEEEeccccCCCCCHHHHHHH
Confidence 100 00 00 000 0 0000001100111101 1456788766432 122334567899
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCC
Q 004735 672 KALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 672 ~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
+++++.|+.++...|++. .|..
T Consensus 226 ~~~~~~g~~v~~~~~~~~--~~~~ 247 (266)
T TIGR03101 226 EQWVQSGVEVTVDLVPGP--AFWQ 247 (266)
T ss_pred HHHHHcCCeEeeeecCCc--hhhc
Confidence 999999999999999987 4544
No 109
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.49 E-value=4.5e-13 Score=123.15 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=125.0
Q ss_pred ccHHHHHHHHCCCEEEEEcC-CC---CCCCChhhHHh-hccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHH
Q 004735 513 LNLSIQYWTSRGWAFVDVNY-GG---STGYGREFRER-LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 587 (732)
Q Consensus 513 ~~~~~~~l~~~G~~v~~~d~-rG---~~g~g~~~~~~-~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~ 587 (732)
.+..+..++..||.|++||+ +| +.+.-.+-.+. ..+.-......|+.+.++||..++ +..+|+++|+++||-+
T Consensus 56 ~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~ 133 (242)
T KOG3043|consen 56 TREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKV 133 (242)
T ss_pred HHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceE
Confidence 34567778889999999995 66 22211111111 111112234789999999999775 5789999999999998
Q ss_pred HHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHH
Q 004735 588 TLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQ 666 (732)
Q Consensus 588 a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~ 666 (732)
+..+.. .+ .|.++++.+|..-= ...+.++++|+|+++|+.|..+|+..
T Consensus 134 vv~~~~~~~-~f~a~v~~hps~~d------------------------------~~D~~~vk~Pilfl~ae~D~~~p~~~ 182 (242)
T KOG3043|consen 134 VVTLSAKDP-EFDAGVSFHPSFVD------------------------------SADIANVKAPILFLFAELDEDVPPKD 182 (242)
T ss_pred EEEeeccch-hheeeeEecCCcCC------------------------------hhHHhcCCCCEEEEeecccccCCHHH
Confidence 877776 55 79999998885310 12345678999999999999999999
Q ss_pred HHHHHHHHHhCCC-CEEEEEeCCCCccCCC-------c---ccHHHHHHHHHHHHHHHhC
Q 004735 667 ARKIYKALKENGL-PVALVEYEGEQHGFRK-------A---ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 667 ~~~~~~~l~~~g~-~~~~~~~~~~gH~~~~-------~---~~~~~~~~~~~~fl~~~l~ 715 (732)
..++-+.+++... ..++.+|++.+|+|.. | ...++.+..+++||++++.
T Consensus 183 v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 183 VKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred HHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 9899888887542 3579999999999852 2 2356778889999999873
No 110
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.47 E-value=1.6e-12 Score=130.47 Aligned_cols=191 Identities=13% Similarity=0.051 Sum_probs=115.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.||++||.+.+. ..|......| .+|.|+++|+||.+...... ...+++..+.+..++++. +.++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~---------~~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAIS---------VDGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCcc---------ccCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999985443 4666677766 37999999999876543211 113444444444444442 3479
Q ss_pred EEEEEcChHHHHHHHHHh-CCC-cceEEEeecCcCCH---HH----HH------hhc-----chhhhhhhh-hh---cCC
Q 004735 576 LCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADL---SM----LR------AET-----HKFESRYID-NL---VGS 631 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~-~~~a~v~~~~~~d~---~~----~~------~~~-----~~~~~~~~~-~~---~~~ 631 (732)
+.++|||+||.+++.++. +++ +++++++.++.... .. .. ... ..+...++. .. ...
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNA 147 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCc
Confidence 999999999999999988 755 49999987754321 10 00 000 000000000 00 000
Q ss_pred --hhhh----------------hh------cCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 632 --EKDY----------------YE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 632 --~~~~----------------~~------~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
...+ .. .+....+.++++|+++++|++|..+. .+.+.. +.++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~-----~~~~~~i~ 217 (242)
T PRK11126 148 EQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQL-----ALPLHVIP 217 (242)
T ss_pred cHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHHh-----cCeEEEeC
Confidence 0000 00 01112356789999999999998542 222221 46899999
Q ss_pred CCCccCCCcccHHHHHHHHHHHHHH
Q 004735 688 GEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 688 ~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
++||.+ ..+..++..+.+.+|+.+
T Consensus 218 ~~gH~~-~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNA-HRENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCch-hhhChHHHHHHHHHHHhh
Confidence 999965 446778888888888865
No 111
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.46 E-value=6.1e-12 Score=128.01 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+..|.||++||... ....|..+...|.++||.|+++|++|.+..... . . ....+++..+.+..++++.. .
T Consensus 16 ~~~p~vvliHG~~~--~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~---~-~---~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISG--GSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSD---A-D---SVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCC--CcCcHHHHHHHHHhCCCEEEEecccCCCCCCCC---c-c---cCCCHHHHHHHHHHHHHhcC-C
Confidence 34589999999743 345677788888889999999999976532110 0 0 11234454444444433321 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC------HHHHHhhcchhh------------------------
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------LSMLRAETHKFE------------------------ 621 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d------~~~~~~~~~~~~------------------------ 621 (732)
.+++.++||||||.+++.++. +|++++++|.+++... ...+........
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 368999999999999999988 9999999999866421 110000000000
Q ss_pred hhhhhhh-cC-Chh---h-hhh------cCcc------ccCCCC-CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEE
Q 004735 622 SRYIDNL-VG-SEK---D-YYE------KSPI------NFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 682 (732)
Q Consensus 622 ~~~~~~~-~~-~~~---~-~~~------~sp~------~~~~~i-~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~ 682 (732)
..+...+ .. .++ . +.. ...+ ....++ ++|+++|.|++|..+|++.++.+.+.+.. .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~~ 241 (273)
T PLN02211 166 KEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----SQ 241 (273)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----cE
Confidence 0000000 00 000 0 000 0011 112234 68999999999999999988888877642 37
Q ss_pred EEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 683 LVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 683 ~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
++.++ +||.. .-+..+++.+.+.+.
T Consensus 242 ~~~l~-~gH~p-~ls~P~~~~~~i~~~ 266 (273)
T PLN02211 242 VYELE-SDHSP-FFSTPFLLFGLLIKA 266 (273)
T ss_pred EEEEC-CCCCc-cccCHHHHHHHHHHH
Confidence 77886 79964 224555555555544
No 112
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.46 E-value=3e-12 Score=132.03 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=131.9
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
...|.||++||... ....|+.....|... |+.|+++|..|. |+. +..+.. ...+..+....+..+..+..
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G~-g~~-s~~~~~----~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPGH-GYS-SPLPRG----PLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCCC-CcC-CCCCCC----CceehhHHHHHHHHHHHhhc-
Confidence 45688999999843 556666666555554 799999999873 321 111111 11456777777776666543
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEE---eecCcCCHH-----HHHhhcchh-------------------hhh
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGA---SLYGVADLS-----MLRAETHKF-------------------ESR 623 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v---~~~~~~d~~-----~~~~~~~~~-------------------~~~ 623 (732)
.+++.++|||+||++++.+|+ +|+.++..+ +..+..... ........+ ...
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 345999999999999999999 999999999 444432110 000000000 000
Q ss_pred hhhhhcC---C----h-----------------h----hhh-----hcCccccCCCCC-CCEEEEEeCCCCccChHHHHH
Q 004735 624 YIDNLVG---S----E-----------------K----DYY-----EKSPINFVDKFS-CPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 624 ~~~~~~~---~----~-----------------~----~~~-----~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~ 669 (732)
....... + . + .+. .......+.++. +|+|+++|++|+++|.+.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 0000000 0 0 0 000 012223456666 999999999999999987777
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 670 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+.+.+ .++++++++++||.. +.+..+.+...+..|+.+.
T Consensus 286 ~~~~~----pn~~~~~I~~~gH~~-h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 286 LKKKL----PNAELVEIPGAGHLP-HLERPEEVAALLRSFIARL 324 (326)
T ss_pred HHhhC----CCceEEEeCCCCccc-ccCCHHHHHHHHHHHHHHh
Confidence 76665 477999999999965 4488889999999999875
No 113
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.44 E-value=1.8e-12 Score=127.91 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=124.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
...+.+|++||.+.+ ...|......|++ ...|.++|..|.| ++.+.....+.. .......+.++.-...-.
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG~G---~SSRP~F~~d~~-~~e~~fvesiE~WR~~~~-- 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLGFG---RSSRPKFSIDPT-TAEKEFVESIEQWRKKMG-- 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccCCC---CCCCCCCCCCcc-cchHHHHHHHHHHHHHcC--
Confidence 345667889997333 2333344455666 7999999998554 444434333322 223355666665544433
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-------------HHh-------hcch---------h--
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-------------LRA-------ETHK---------F-- 620 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-------------~~~-------~~~~---------~-- 620 (732)
.++..|+|||+|||++..++. ||++++..|+.+|..-... +.. ...+ +
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 469999999999999999988 9999999999998632110 000 0000 0
Q ss_pred --hhhhhhhhc----C--Chh---------------------------hhhhcCccccCCCCC--CCEEEEEeCCCCccC
Q 004735 621 --ESRYIDNLV----G--SEK---------------------------DYYEKSPINFVDKFS--CPIILFQGLEDKVVP 663 (732)
Q Consensus 621 --~~~~~~~~~----~--~~~---------------------------~~~~~sp~~~~~~i~--~P~Lii~G~~D~~v~ 663 (732)
..++....+ + .++ .+....-+..+..++ +|+++|+|++|. +.
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dW-mD 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDW-MD 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccc-cc
Confidence 000000000 0 000 001111122344455 999999999996 46
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 664 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 664 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
.....++...+.. ..++.++++++||.... ++.+...+.++.++++
T Consensus 318 ~~~g~~~~~~~~~--~~~~~~~v~~aGHhvyl-Dnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLMK--EYVEIIIVPGAGHHVYL-DNPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhhc--ccceEEEecCCCceeec-CCHHHHHHHHHHHHhc
Confidence 6667777776633 35799999999997533 5667777777777764
No 114
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.43 E-value=4e-12 Score=134.29 Aligned_cols=179 Identities=12% Similarity=0.101 Sum_probs=109.4
Q ss_pred HHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc-EEEEEcChHHHHHHHHHh-CCC
Q 004735 519 YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRD 596 (732)
Q Consensus 519 ~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~p~ 596 (732)
.|...+|.|+++|+||.++.. . .. ...++..+.+..+++... .++ +.++||||||++++.++. +|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~---~----~~---~~~~~~a~dl~~ll~~l~--l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSL---D----VP---IDTADQADAIALLLDALG--IARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCCCCCCC---C----CC---CCHHHHHHHHHHHHHHcC--CCcceEEEEECHHHHHHHHHHHHChH
Confidence 354567999999999764321 1 11 123444444444444423 335 579999999999999998 999
Q ss_pred cceEEEeecCcCCHHH----HHh---h----c-------c--hhhhh-----h-----hhhhcC-C-----------hh-
Q 004735 597 TFKAGASLYGVADLSM----LRA---E----T-------H--KFESR-----Y-----IDNLVG-S-----------EK- 633 (732)
Q Consensus 597 ~~~a~v~~~~~~d~~~----~~~---~----~-------~--~~~~~-----~-----~~~~~~-~-----------~~- 633 (732)
+++++|++++...... ... . . . ..... + +...+. . ..
T Consensus 162 ~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T PRK08775 162 RVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAED 241 (343)
T ss_pred hhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHH
Confidence 9999999987532110 000 0 0 0 00000 0 000000 0 00
Q ss_pred --------hhhhcCc-------------cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCc
Q 004735 634 --------DYYEKSP-------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQH 691 (732)
Q Consensus 634 --------~~~~~sp-------------~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH 691 (732)
.....++ ...+.++++|+|+++|++|.++|+....++.+.+.. +.+++++++ +||
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l~~i~~~aGH 318 (343)
T PRK08775 242 YLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSLRVLRSPYGH 318 (343)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeEEEEeCCccH
Confidence 0000000 112567899999999999999999888888777632 458999985 899
Q ss_pred cCCCcccHHHHHHHHHHHHHHH
Q 004735 692 GFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
... .+..+.+.+.+.+||++.
T Consensus 319 ~~~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 319 DAF-LKETDRIDAILTTALRST 339 (343)
T ss_pred HHH-hcCHHHHHHHHHHHHHhc
Confidence 653 367788888889998754
No 115
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.43 E-value=3.6e-11 Score=130.79 Aligned_cols=316 Identities=13% Similarity=0.138 Sum_probs=182.1
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCC-CCCC-cccCCCCCccccccc-ccCCceeEE--ECCEEEEEeCCCC--
Q 004735 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITPKEYAVRTTAQ-EYGGGAFRI--FGDTVIFSNYKDQ-- 165 (732)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~-~~l~~~~~~~~~~~~-~~g~~~~~~--~~~~i~f~~~~~~-- 165 (732)
.|... |+.+||....++ .....++|..... ++.. +.|++. +....-. -..++.+.+ +++.++|.....|
T Consensus 73 ~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~--n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e 148 (414)
T PF02897_consen 73 VPVRR-GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDP--NELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE 148 (414)
T ss_dssp --EEE-TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEG--GGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS
T ss_pred ccEEE-CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcc--hHhhccCceEEeeeeeECCCCCEEEEEecCCCCc
Confidence 34434 888888876554 3343566665441 1233 444432 1111111 111223344 4668888765444
Q ss_pred --eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCC--CCCceeEEEEEEcCCCCccccEEccc
Q 004735 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 166 --~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~--~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
.|+++|+++ |+ .+...- ....+..+.|++||+.++|+..+.... ......+||+..+.+.... ...|..
T Consensus 149 ~~~l~v~Dl~t--g~--~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe 221 (414)
T PF02897_consen 149 WYTLRVFDLET--GK--FLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFE 221 (414)
T ss_dssp EEEEEEEETTT--TE--EEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC
T ss_pred eEEEEEEECCC--Cc--CcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEe
Confidence 699999987 53 222210 012223388999999999988765433 1122489999999886521 124443
Q ss_pred C--CCc-eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC---ceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 242 G--SDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---DVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 242 ~--~~~-~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g---~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+ ..+ ......|+||++|+..+... . ..+++|++|+. ++ ......+....+ .....+... .+.+|
T Consensus 222 ~~~~~~~~~~~~~s~d~~~l~i~~~~~-~---~~s~v~~~d~~-~~~~~~~~~~~l~~~~~----~~~~~v~~~-~~~~y 291 (414)
T PF02897_consen 222 EPDEPFWFVSVSRSKDGRYLFISSSSG-T---SESEVYLLDLD-DGGSPDAKPKLLSPRED----GVEYYVDHH-GDRLY 291 (414)
T ss_dssp -TTCTTSEEEEEE-TTSSEEEEEEESS-S---SEEEEEEEECC-CTTTSS-SEEEEEESSS----S-EEEEEEE-TTEEE
T ss_pred ecCCCcEEEEEEecCcccEEEEEEEcc-c---cCCeEEEEecc-ccCCCcCCcEEEeCCCC----ceEEEEEcc-CCEEE
Confidence 3 233 45678899999887655333 1 23789999998 43 222233333332 112222222 33488
Q ss_pred EEEeccCCeeeEEEEeccCCe---EE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC-C
Q 004735 316 FVTDRKNGFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-G 390 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~---~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~-~ 390 (732)
+.++.......|+.+++++.. .+ .|.+...... ...+.. .+++|++...+++..+|+++++. +
T Consensus 292 i~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-------l~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 292 ILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-------LEDVSL-----FKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-------EEEEEE-----ETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-------EEEEEE-----ECCEEEEEEEECCccEEEEEECCCC
Confidence 888875667889999988754 33 3433321111 111222 56789999999999999999999 7
Q ss_pred CceEEeccCCC-ceEEe--eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeeee
Q 004735 391 HSLSLLDIPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 391 ~~~~~lt~~~~-~v~~~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt~ 441 (732)
.....+..+.. .+..+ ..+.+.++|..++...|..+|.+|+++++.+.+++
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 66677766543 34444 34567899999999999999999999999876653
No 116
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.42 E-value=1.7e-11 Score=129.50 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=125.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
.|.||++||.+.. ...|...+..|+ .+|.|+++|++|.+....... .......++++.+.+..++++. ..+
T Consensus 127 ~~~ivllHG~~~~--~~~w~~~~~~L~-~~~~Via~DlpG~G~S~~p~~----~~~~~ys~~~~a~~l~~~i~~l--~~~ 197 (383)
T PLN03084 127 NPPVLLIHGFPSQ--AYSYRKVLPVLS-KNYHAIAFDWLGFGFSDKPQP----GYGFNYTLDEYVSSLESLIDEL--KSD 197 (383)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCCcc----cccccCCHHHHHHHHHHHHHHh--CCC
Confidence 4789999998543 345666777775 479999999997654322110 0001134556666555555543 235
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH-----HHHHhhc-c----------hhh--hh------------
Q 004735 575 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL-----SMLRAET-H----------KFE--SR------------ 623 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~-----~~~~~~~-~----------~~~--~~------------ 623 (732)
++.|+|||+||.+++.++. +|++++++|++++.... ....... . ... ..
T Consensus 198 ~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (383)
T PLN03084 198 KVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMKE 277 (383)
T ss_pred CceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCCH
Confidence 8999999999999999988 99999999999976421 1000000 0 000 00
Q ss_pred -----hhhhhc--CC-hh----hhhhcC-cc----------ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCC
Q 004735 624 -----YIDNLV--GS-EK----DYYEKS-PI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 680 (732)
Q Consensus 624 -----~~~~~~--~~-~~----~~~~~s-p~----------~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~ 680 (732)
+...+. +. .. .+.... .. ....++++|+|+++|+.|.+++.+..+++.+.. +
T Consensus 278 e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~-----~ 352 (383)
T PLN03084 278 DDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS-----Q 352 (383)
T ss_pred HHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----C
Confidence 000000 00 00 000000 00 001357899999999999999988777766642 4
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 681 VALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 681 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
.++++++++||.. ..+..+++.+.+.+|+.
T Consensus 353 a~l~vIp~aGH~~-~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 353 HKLIELPMAGHHV-QEDCGEELGGIISGILS 382 (383)
T ss_pred CeEEEECCCCCCc-chhCHHHHHHHHHHHhh
Confidence 5899999999965 44778888888888875
No 117
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.42 E-value=1.3e-12 Score=117.66 Aligned_cols=201 Identities=17% Similarity=0.173 Sum_probs=141.5
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-HHHHHHHHCCCEEEEEcCCCCC
Q 004735 458 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 458 ~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
..+.+.+.+-- .| .-...+|.|.+ ..|++||+|||.|........ ..+..+..+||+|..++|--++
T Consensus 42 i~r~e~l~Yg~--~g-~q~VDIwg~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~ 109 (270)
T KOG4627|consen 42 IIRVEHLRYGE--GG-RQLVDIWGSTN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCP 109 (270)
T ss_pred ccchhccccCC--CC-ceEEEEecCCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCc
Confidence 44455555532 23 44446676744 348999999999876554332 3456677889999999985433
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHH
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~ 614 (732)
. ++. -...+.++...++|+.+... ..+++.+.|||.|+.+++.+.+ +..++.++++.+|+++++.+.
T Consensus 110 q-~ht---------L~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~ 178 (270)
T KOG4627|consen 110 Q-VHT---------LEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELS 178 (270)
T ss_pred c-ccc---------HHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHh
Confidence 2 111 11347889999999998743 4567889999999999999887 888999999999999998875
Q ss_pred hhcchhhhhhhhhhcC-ChhhhhhcCc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 615 AETHKFESRYIDNLVG-SEKDYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~-~~~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
..... .-++ ..+.-...|+ +.....++.|+|+++++.|.---++|.+.+.+++++ ..+..|++.+|.
T Consensus 179 ~te~g-------~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 179 NTESG-------NDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred CCccc-------cccCcccchhhhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 43221 1111 1111222233 234567789999999999987778999999999886 478889999995
No 118
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.40 E-value=5.3e-11 Score=120.93 Aligned_cols=300 Identities=13% Similarity=0.132 Sum_probs=162.7
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
+-...|.+ |+++.|...+ +|+..||..+.+++ +.++|+..+.. ...++.++..++.++|.... .+|+.
T Consensus 38 F~~~~ft~dG~kllF~s~~---dg~~nly~lDL~t~-~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~~-~~l~~ 106 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF---DGNRNLYLLDLATG-EITQLTDGPGD------NTFGGFLSPDDRALYYVKNG-RSLRR 106 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T---TSS-EEEEEETTT--EEEE---SS-B-------TTT-EE-TTSSEEEEEETT-TEEEE
T ss_pred ecCCCcCCCCCEEEEEecc---CCCcceEEEEcccC-EEEECccCCCC------CccceEEecCCCeEEEEECC-CeEEE
Confidence 45778888 8888886654 36668899998876 88889875411 11134455555677777532 47999
Q ss_pred EeCCCCCCCceecCCCCCCCCeE-eeceeecCCCCEEEEEEeccCCC---C----------CCceeEEEEEEcCCCCccc
Q 004735 170 HSIDSKDSSPLPITPDYGEPLVS-YADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~-~~~~~~spdG~~l~~~~~~~~~~---~----------~~~~~~l~~~d~~~~~~~~ 235 (732)
+|+++ .+.+.|-..++ ... +.......|+++++.+...+.+. + ......|+.+|+.+|+
T Consensus 107 vdL~T--~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--- 179 (386)
T PF14583_consen 107 VDLDT--LEERVVYEVPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--- 179 (386)
T ss_dssp EETTT----EEEEEE--T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----
T ss_pred EECCc--CcEEEEEECCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc---
Confidence 99998 77766654421 222 33333467899988876543321 1 1236899999999999
Q ss_pred cEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCc--cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 236 PKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~--~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+.........+.+|| |...|.|.- . .||+. .+||+++.+ ++..+.+..-.. . ..+.--.|+|||
T Consensus 180 ~~~v~~~~~wlgH~~fsP~dp~li~fCH---E-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~~---~--e~~gHEfw~~DG 249 (386)
T PF14583_consen 180 RKVVFEDTDWLGHVQFSPTDPTLIMFCH---E-GPWDLVDQRIWTINTD-GSNVKKVHRRME---G--ESVGHEFWVPDG 249 (386)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEETT-S---EESS---T---T--EEEEEEEE-TTS
T ss_pred eeEEEecCccccCcccCCCCCCEEEEec---c-CCcceeceEEEEEEcC-CCcceeeecCCC---C--cccccccccCCC
Confidence 888888888888999999 777788854 1 25654 479999987 444333322111 1 455666799999
Q ss_pred c-EEEEEeccCC-eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE-------------
Q 004735 313 E-LFFVTDRKNG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ------------- 377 (732)
Q Consensus 313 ~-l~~~~~~~~g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~------------- 377 (732)
+ |+|.+..+.+ ...|+.+|+++++.+.+...+. .+ .+...+ |++ |++.-..
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-----~~-----H~~ss~---Dg~-L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-----CS-----HFMSSP---DGK-LFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-----EE-----EEEE-T---TSS-EEEEEE--------------
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-----ee-----eeEEcC---CCC-EEEecCCCCCccccccccce
Confidence 9 8887764334 4568899999998777653321 10 111110 333 3322111
Q ss_pred -CCEEEEEEEECCCCceEEeccCCC------------ceEEeeEeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 378 -NGRSYLGILDDFGHSLSLLDIPFT------------DIDNITLGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 378 -~g~~~ly~~~~~~~~~~~lt~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
.+..-||++++..+..+.|..... ....-.+++++.+++.++..++..||.+++.
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 123468889998887766654321 1122246677788888899999999999875
No 119
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.40 E-value=6.7e-12 Score=114.12 Aligned_cols=214 Identities=19% Similarity=0.251 Sum_probs=141.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 539 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g 539 (732)
+++.+.++.+ .+..+.+.+..- +...+||++||.-..-........+..+++.|+-++.+|++|.+...
T Consensus 9 ~~~~ivi~n~-~ne~lvg~lh~t----------gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~ 77 (269)
T KOG4667|consen 9 IAQKIVIPNS-RNEKLVGLLHET----------GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESE 77 (269)
T ss_pred eeeEEEeccC-CCchhhcceecc----------CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcC
Confidence 4566777776 677766655433 34579999999733332233445778888999999999999887765
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh--
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-- 616 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-- 616 (732)
.++... . +....+|+..+++++.... .---+|+|||-||.+++..+. +++ +.-++-.+|-+|......+
T Consensus 78 gsf~~G---n-~~~eadDL~sV~q~~s~~n---r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRl 149 (269)
T KOG4667|consen 78 GSFYYG---N-YNTEADDLHSVIQYFSNSN---RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERL 149 (269)
T ss_pred CccccC---c-ccchHHHHHHHHHHhccCc---eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhh
Confidence 554322 2 2245799999999996531 122369999999999998888 666 7778888888877655421
Q ss_pred cchhhhhhhh-hhcCC-------hhhhhhcCccc--------cCCC--CCCCEEEEEeCCCCccChHHHHHHHHHHHhCC
Q 004735 617 THKFESRYID-NLVGS-------EKDYYEKSPIN--------FVDK--FSCPIILFQGLEDKVVPPDQARKIYKALKENG 678 (732)
Q Consensus 617 ~~~~~~~~~~-~~~~~-------~~~~~~~sp~~--------~~~~--i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g 678 (732)
...+..+..+ .++.. +..+...+-+. ...+ .+||+|-+||..|.+||.+.+.++++.+..
T Consensus 150 g~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n-- 227 (269)
T KOG4667|consen 150 GEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN-- 227 (269)
T ss_pred cccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC--
Confidence 1111111111 11110 01111111111 1112 359999999999999999999999998874
Q ss_pred CCEEEEEeCCCCccCCCc
Q 004735 679 LPVALVEYEGEQHGFRKA 696 (732)
Q Consensus 679 ~~~~~~~~~~~gH~~~~~ 696 (732)
.++++++|+.|++...
T Consensus 228 --H~L~iIEgADHnyt~~ 243 (269)
T KOG4667|consen 228 --HKLEIIEGADHNYTGH 243 (269)
T ss_pred --CceEEecCCCcCccch
Confidence 4899999999998753
No 120
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.39 E-value=2.3e-12 Score=125.06 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH----Hhh---cchhhhh--h
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML----RAE---THKFESR--Y 624 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~----~~~---~~~~~~~--~ 624 (732)
.+-+..+++||.+++.++.++|+|+|.|.||.+|+.++. +| .++++|+.+|..-.... ... ....... .
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 455789999999999999999999999999999999999 66 79999999885421110 000 0000000 0
Q ss_pred h-hhhcCChh---hh------hhcCccccCCCCCCCEEEEEeCCCCccChHH-HHHHHHHHHhCCCC--EEEEEeCCCCc
Q 004735 625 I-DNLVGSEK---DY------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQ-ARKIYKALKENGLP--VALVEYEGEQH 691 (732)
Q Consensus 625 ~-~~~~~~~~---~~------~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~-~~~~~~~l~~~g~~--~~~~~~~~~gH 691 (732)
. ....+... .+ ......-.++++++|+|+++|++|.+.|-.. ++.+.+.|++.|.+ ++++.|+++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 0 00000000 00 0011112366789999999999999988654 55677889998865 78999999999
Q ss_pred cCCCc---------------------------ccHHHHHHHHHHHHHHHhC
Q 004735 692 GFRKA---------------------------ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 692 ~~~~~---------------------------~~~~~~~~~~~~fl~~~l~ 715 (732)
.+..| ...++.++++++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 75321 1356789999999999986
No 121
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.37 E-value=3.8e-11 Score=127.74 Aligned_cols=219 Identities=18% Similarity=0.164 Sum_probs=134.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCC----CEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G----~~v~~~d~rG~ 535 (732)
..+.+++.+..-|.+..+++|.|.+.. .+++|+|+++||..+..... .......|...| ++++.+|....
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-----~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~ 252 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-----PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDT 252 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-----CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCc
Confidence 346677777656788899999998732 35789999999976543322 223445566666 45678875322
Q ss_pred CCCChhhHHhhccCCCcccHH-H-HHHHHHHHHhcCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH
Q 004735 536 TGYGREFRERLLGRWGIVDVN-D-CCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 610 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~-D-~~~~i~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~ 610 (732)
......+. ....+. . ..+.+.++.+++. .|+++.+|+|+||||+.++.++. +|++|.++++++|.+-+
T Consensus 253 ~~R~~el~-------~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww 325 (411)
T PRK10439 253 THRSQELP-------CNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWW 325 (411)
T ss_pred ccccccCC-------chHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceec
Confidence 11111110 001111 1 1344556666544 47789999999999999999988 99999999999996422
Q ss_pred HHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004735 611 SMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 690 (732)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~g 690 (732)
..... .....+. +.+... ....-...++|-+|+.|... ....+++++.|+++|.++++.+++| |
T Consensus 326 ~~~~~---~~~~~l~-------~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-G 389 (411)
T PRK10439 326 PHRGG---QQEGVLL-------EQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-G 389 (411)
T ss_pred CCccC---CchhHHH-------HHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-C
Confidence 11000 0000000 011110 01112245888899998643 5678999999999999999999997 6
Q ss_pred ccCCCcccHHHHHHHHHHHH
Q 004735 691 HGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 691 H~~~~~~~~~~~~~~~~~fl 710 (732)
|.+. .+...+...+.||
T Consensus 390 Hd~~---~Wr~~L~~~L~~l 406 (411)
T PRK10439 390 HDAL---CWRGGLIQGLIDL 406 (411)
T ss_pred cCHH---HHHHHHHHHHHHH
Confidence 9642 3344444444443
No 122
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.36 E-value=2.1e-11 Score=123.85 Aligned_cols=235 Identities=9% Similarity=0.038 Sum_probs=127.3
Q ss_pred EeCCCCCCCceecCCCCCC-CCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc-ee
Q 004735 170 HSIDSKDSSPLPITPDYGE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF-YA 247 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~-~~ 247 (732)
.|..+| -+..+||+.+.. ..+.+.+.+|.+||++++|..+..+ ..+||.+|+++++ .+|||.+++. ..
T Consensus 15 ~D~~TG-~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg------~~nly~lDL~t~~---i~QLTdg~g~~~~ 84 (386)
T PF14583_consen 15 IDPDTG-HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDG------NRNLYLLDLATGE---ITQLTDGPGDNTF 84 (386)
T ss_dssp E-TTT---EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTS------S-EEEEEETTT-E---EEE---SS-B-TT
T ss_pred eCCCCC-ceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCC------CcceEEEEcccCE---EEECccCCCCCcc
Confidence 455664 567899987432 2244577889999999999776432 3799999999999 9999987643 34
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC--CCCc-EEEEEeccCC-
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS--SKGE-LFFVTDRKNG- 323 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws--pDg~-l~~~~~~~~g- 323 (732)
+..+||+++.|+|+. +...|+.+|++ +.+.+.+..++. +| .....|+ .|++ ++........
T Consensus 85 g~~~s~~~~~~~Yv~--------~~~~l~~vdL~-T~e~~~vy~~p~---~~---~g~gt~v~n~d~t~~~g~e~~~~d~ 149 (386)
T PF14583_consen 85 GGFLSPDDRALYYVK--------NGRSLRRVDLD-TLEERVVYEVPD---DW---KGYGTWVANSDCTKLVGIEISREDW 149 (386)
T ss_dssp T-EE-TTSSEEEEEE--------TTTEEEEEETT-T--EEEEEE--T---TE---EEEEEEEE-TTSSEEEEEEEEGGG-
T ss_pred ceEEecCCCeEEEEE--------CCCeEEEEECC-cCcEEEEEECCc---cc---ccccceeeCCCccEEEEEEEeehhc
Confidence 678999999999987 23469999998 776544443333 22 2234554 4666 4444322111
Q ss_pred -----------------eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC--C-EEEE
Q 004735 324 -----------------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--G-RSYL 383 (732)
Q Consensus 324 -----------------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g-~~~l 383 (732)
..+|+.+|+.+|+.+.|.........+.++|- +...|.|.-+.. . ..+|
T Consensus 150 ~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~-----------dp~li~fCHEGpw~~Vd~Ri 218 (386)
T PF14583_consen 150 KPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT-----------DPTLIMFCHEGPWDLVDQRI 218 (386)
T ss_dssp ----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT-----------EEEEEEEEE-S-TTTSS-SE
T ss_pred cCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC-----------CCCEEEEeccCCcceeceEE
Confidence 24799999999999998866544444444431 566788877632 2 2479
Q ss_pred EEEECCCCceEEeccCC-Cce--EEe-eEeCCEEEEEEeCCCCCc-EEEEEEcCCCcceeee
Q 004735 384 GILDDFGHSLSLLDIPF-TDI--DNI-TLGNDCLFVEGASGVEPS-SVAKVTLDDHKLKAVD 440 (732)
Q Consensus 384 y~~~~~~~~~~~lt~~~-~~v--~~~-~~~~~~~~~~~~~~~~~~-~ly~~dl~~~~~~~lt 440 (732)
|.++.+++..+.+.... ..+ .++ +.++..++|..-.+.+.. -|+.+|+++++.+.+.
T Consensus 219 W~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 219 WTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 99999999888886542 221 222 566777777665454433 4899999998765554
No 123
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.34 E-value=3.6e-11 Score=127.29 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=134.9
Q ss_pred CCCCEEEEEcCCCCCccC----------Cc-ccHHH---HHHHHCCCEEEEEcCCCCCC--------CChhhHHhhc---
Q 004735 493 EKPPLLVKSHGGPTSEAR----------GI-LNLSI---QYWTSRGWAFVDVNYGGSTG--------YGREFRERLL--- 547 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~----------~~-~~~~~---~~l~~~G~~v~~~d~rG~~g--------~g~~~~~~~~--- 547 (732)
.+-++||++|+..+.... .. |..++ ..+--.-|-|+++|.-|++. .|........
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 345899999996443211 11 11111 22334468999999987642 1211111111
Q ss_pred --cCCCcccHHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCH---H--HHHh---
Q 004735 548 --GRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---S--MLRA--- 615 (732)
Q Consensus 548 --~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~---~--~~~~--- 615 (732)
.++....++|..+.+..++++..+ +++. ++||||||++++.++. +|++++.+|++++.... . .+..
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~~~~~~~~~~~~~~~~ 211 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNPQNDAWTSVNVLQNWA 211 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCCCCChhHHHHHHHHHH
Confidence 124446788988888888876444 5775 9999999999999988 99999999998754211 0 0000
Q ss_pred ----hcc------------h---------------hhhhhhhhhcC-----------------Chhhhhh----------
Q 004735 616 ----ETH------------K---------------FESRYIDNLVG-----------------SEKDYYE---------- 637 (732)
Q Consensus 616 ----~~~------------~---------------~~~~~~~~~~~-----------------~~~~~~~---------- 637 (732)
... . +...++...++ ..+.|..
T Consensus 212 ~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~e~yl~~~~~~~~~~~ 291 (389)
T PRK06765 212 EAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSFEKEINKATYRRAELV 291 (389)
T ss_pred HHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhHHHHHHHHHHHhhhcc
Confidence 000 0 00001110000 0001100
Q ss_pred --------------c-------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCC
Q 004735 638 --------------K-------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRK 695 (732)
Q Consensus 638 --------------~-------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~ 695 (732)
. +....+.++++|+|+++|++|.++|++.++++.+.++..+.+++++++++ .||.. .
T Consensus 292 Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~-~ 370 (389)
T PRK06765 292 DANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMA-G 370 (389)
T ss_pred ChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcch-h
Confidence 0 11223557899999999999999999999999999987666789999986 89964 3
Q ss_pred cccHHHHHHHHHHHHHH
Q 004735 696 AENIKFTLEQQMVFFAR 712 (732)
Q Consensus 696 ~~~~~~~~~~~~~fl~~ 712 (732)
.+..+++.+.+.+||++
T Consensus 371 le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 371 VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred hcCHHHHHHHHHHHHcc
Confidence 35667788888888764
No 124
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.32 E-value=5e-11 Score=115.65 Aligned_cols=201 Identities=18% Similarity=0.151 Sum_probs=130.9
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHH
Q 004735 477 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVN 556 (732)
Q Consensus 477 ~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~ 556 (732)
..++.|+. ...+|+|||+||.. .....+..+.+++++.||+|+.+|+....+.. ...+++
T Consensus 6 l~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~-----------~~~~~~ 65 (259)
T PF12740_consen 6 LLVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGGPD-----------DTDEVA 65 (259)
T ss_pred eEEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCCCC-----------cchhHH
Confidence 45677876 56799999999984 33334777899999999999999964322211 224477
Q ss_pred HHHHHHHHHHhc--------CCCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEeecCcCCHHHHHhhcchhhh
Q 004735 557 DCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFES 622 (732)
Q Consensus 557 D~~~~i~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~-----p~~~~a~v~~~~~~d~~~~~~~~~~~~~ 622 (732)
++.+.++|+.+. ..+|-.|++|+|||.||-++..++. + +.+|++++++.|+..+......
T Consensus 66 ~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~------ 139 (259)
T PF12740_consen 66 SAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT------ 139 (259)
T ss_pred HHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC------
Confidence 888889998763 1358889999999999999988877 5 5689999999998632221100
Q ss_pred hhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCC--------ccChH--HHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 623 RYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK--------VVPPD--QARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 623 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~--------~v~~~--~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+..+. +.| ..-+...|+|++-..-.. -|.++ +-.+|+++++. +.-..+..+.||.
T Consensus 140 --------~P~v~~-~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 140 --------EPPVLT-YTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVAKDYGHM 205 (259)
T ss_pred --------CCcccc-Ccc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEeCCCCch
Confidence 011110 011 111245899998655553 22222 34667777653 7778888999995
Q ss_pred -CCCc-----------------------ccHHHHHHHHHHHHHHHhCCC
Q 004735 693 -FRKA-----------------------ENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 693 -~~~~-----------------------~~~~~~~~~~~~fl~~~l~~~ 717 (732)
|... +.++-.--.+.+|++.+|++.
T Consensus 206 d~LDd~~~~~~~~~~~~~~Ck~g~~~~~~~r~f~~g~~vAfl~~~l~g~ 254 (259)
T PF12740_consen 206 DFLDDDTPGYVGLCLFRCLCKNGPDDRDPMRRFVGGIMVAFLNAQLQGD 254 (259)
T ss_pred HhhcCCCcchhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 2111 112233345788888888753
No 125
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.31 E-value=8.8e-11 Score=145.68 Aligned_cols=215 Identities=15% Similarity=0.160 Sum_probs=131.1
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|.||++||.+.+. ..|......|. .+|.|+++|+||.+.+................++++.+.+..++++. ..
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l--~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHI--TP 1444 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHh--CC
Confidence 357899999985444 35666666664 46999999999776543211000000001123556666555555542 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH--H---HHhh-------------cchhhhhhhh-h----h-
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--M---LRAE-------------THKFESRYID-N----L- 628 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~--~---~~~~-------------~~~~~~~~~~-~----~- 628 (732)
+++.|+||||||.+++.++. +|+++++++++++...+. . .... ...+...+.. . .
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 1524 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLR 1524 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhhc
Confidence 68999999999999999988 999999999887642111 0 0000 0000000000 0 0
Q ss_pred ------------c-C-Chh----hhhhc------CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC------
Q 004735 629 ------------V-G-SEK----DYYEK------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG------ 678 (732)
Q Consensus 629 ------------~-~-~~~----~~~~~------sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g------ 678 (732)
. . +.. .+... +-...+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~ 1603 (1655)
T PLN02980 1525 NHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDK 1603 (1655)
T ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccc
Confidence 0 0 000 00000 0112367889999999999998774 56677777665421
Q ss_pred --CCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 679 --LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 679 --~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
..+++++++++||.. ..++.+.+.+.+.+||.+.-.
T Consensus 1604 ~~~~a~lvvI~~aGH~~-~lE~Pe~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1604 GKEIIEIVEIPNCGHAV-HLENPLPVIRALRKFLTRLHN 1641 (1655)
T ss_pred cccceEEEEECCCCCch-HHHCHHHHHHHHHHHHHhccc
Confidence 126899999999965 346778888899999987554
No 126
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.27 E-value=5.8e-12 Score=127.09 Aligned_cols=219 Identities=19% Similarity=0.256 Sum_probs=128.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCC----CEEEEEcCCCCCCCChhhHHh-
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGSTGYGREFRER- 545 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G----~~v~~~d~rG~~g~g~~~~~~- 545 (732)
-|..+..++|.|++. . +.+++|+|+++||..............+.+...| ..+++++..+.......+...
T Consensus 4 Lg~~~~~~VylP~~y--~--~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~ 79 (251)
T PF00756_consen 4 LGRDRRVWVYLPPGY--D--PSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPA 79 (251)
T ss_dssp TTEEEEEEEEECTTG--G--TTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSB
T ss_pred cCCeEEEEEEECCCC--C--CCCCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccc
Confidence 478889999999884 2 4788999999999500111111112233334443 456666654332111111100
Q ss_pred -----hccCCCcccHHHH--HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHH-HHhh
Q 004735 546 -----LLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-LRAE 616 (732)
Q Consensus 546 -----~~~~~~~~~~~D~--~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~-~~~~ 616 (732)
.....+...+.+. .+.+.++.++..+++++.+|+|+||||+.|+.++. ||+.|.++++++|..++.. ++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~ 159 (251)
T PF00756_consen 80 GSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGP 159 (251)
T ss_dssp CTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHH
T ss_pred ccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCc
Confidence 0000111112222 35677888888777777999999999999999988 9999999999999876541 1111
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccc-----CCCCCCCEEEEEeCCCCccC----------hHHHHHHHHHHHhCCCCE
Q 004735 617 THKFESRYIDNLVGSEKDYYEKSPINF-----VDKFSCPIILFQGLEDKVVP----------PDQARKIYKALKENGLPV 681 (732)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~i~~P~Lii~G~~D~~v~----------~~~~~~~~~~l~~~g~~~ 681 (732)
.+.+.|...++... ...-..++++.+|+.|.... .....++.+.|+..|.+.
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 226 (251)
T PF00756_consen 160 -------------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPH 226 (251)
T ss_dssp -------------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTT
T ss_pred -------------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCc
Confidence 01112222222221 12234678999999998321 223444555566667788
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 682 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 682 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
.++.++ ++|.+ ..+...+...+.||
T Consensus 227 ~~~~~~-G~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 227 TYHVFP-GGHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp ESEEEH-SESSH---HHHHHHHHHHHHHH
T ss_pred eEEEec-Cccch---hhHHHHHHHHHhhC
Confidence 899998 46854 34566666666664
No 127
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=124.21 Aligned_cols=235 Identities=21% Similarity=0.247 Sum_probs=152.6
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc---ccHHH---HHHHHCCCEEEEEcCCCC
Q 004735 462 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSI---QYWTSRGWAFVDVNYGGS 535 (732)
Q Consensus 462 ~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~---~~~~~---~~l~~~G~~v~~~d~rG~ 535 (732)
..+.++.+ ||.++...+|.|++ .++.|+++..+-.|-...... ..... ..++.+||+|+..|.||+
T Consensus 20 ~~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~ 91 (563)
T COG2936 20 RDVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGR 91 (563)
T ss_pred eeeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccccc
Confidence 45778888 99999999999987 578899999884333322111 11122 268999999999999998
Q ss_pred CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 536 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
+++...+.... . .+.+|-.+.|+|+.+++..+ .+|+++|.|++|+..+++++ +|.-+|+++..++..|...-.
T Consensus 92 ~~SeG~~~~~~----~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~ 165 (563)
T COG2936 92 GGSEGVFDPES----S-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDD 165 (563)
T ss_pred ccCCcccceec----c-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccc
Confidence 87655443322 1 36899999999999998876 89999999999999999999 888899999998877632110
Q ss_pred hh---c--chhhhhh-------------------------hh----------hhcCCh-------------hhhhhcCcc
Q 004735 615 AE---T--HKFESRY-------------------------ID----------NLVGSE-------------KDYYEKSPI 641 (732)
Q Consensus 615 ~~---~--~~~~~~~-------------------------~~----------~~~~~~-------------~~~~~~sp~ 641 (732)
.. . ..+...| .. ...+.+ ..|.+.+-.
T Consensus 166 ~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~~ 245 (563)
T COG2936 166 AFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDRV 245 (563)
T ss_pred cccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCcc
Confidence 00 0 0000000 00 000000 133434445
Q ss_pred ccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc-----ccHHHHHHHHHHHHHHHhC
Q 004735 642 NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 642 ~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-----~~~~~~~~~~~~fl~~~l~ 715 (732)
...+++++|+|++.|-.|.. .....+++..++.. +..+++-|- .|.-..- ......++...+||+.++.
T Consensus 246 ~d~~~i~vP~L~i~gW~D~~--l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~l~~~~~ 319 (563)
T COG2936 246 ADLSKIKVPALVIGGWSDGY--LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDFLDAYLD 319 (563)
T ss_pred cccccCCCcEEEEccccccc--ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhhhhHhhh
Confidence 55788999999999999964 44566777777664 335555543 4542111 2233444555555555554
No 128
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.26 E-value=1.4e-10 Score=118.04 Aligned_cols=195 Identities=21% Similarity=0.257 Sum_probs=124.2
Q ss_pred HHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-
Q 004735 516 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA- 593 (732)
Q Consensus 516 ~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~- 593 (732)
.+..+.++||+|+++||.|-+. .|.... -....+-|.+.+++.+... +.....+++++|+|.||..+++++.
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~~~---~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLNGR---SEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccCcH---hHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 5677889999999999987554 332211 1112244444555444432 2223479999999999999988874
Q ss_pred ----CCCc---ceEEEeecCcCCHHHHHhhcch-----h--------h------hhhhhhhcC-----------------
Q 004735 594 ----FRDT---FKAGASLYGVADLSMLRAETHK-----F--------E------SRYIDNLVG----------------- 630 (732)
Q Consensus 594 ----~p~~---~~a~v~~~~~~d~~~~~~~~~~-----~--------~------~~~~~~~~~----------------- 630 (732)
-|++ +.++++..+..|+..+...... + . ..++...+.
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 3554 7888888888877654331110 0 0 000000000
Q ss_pred --------C------------------h---hhhhhcCc-cccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCC-C
Q 004735 631 --------S------------------E---KDYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG-L 679 (732)
Q Consensus 631 --------~------------------~---~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~ 679 (732)
+ + ..+.+.+. +..-..-+.|++|.||..|.++|+....++++.++++| .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGGA 251 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCCC
Confidence 0 0 00000000 00011225899999999999999999999999999999 7
Q ss_pred CEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhCCCCCC
Q 004735 680 PVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 720 (732)
Q Consensus 680 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 720 (732)
+++++.+++.+|... ........++|+.+.+.+.+..
T Consensus 252 ~V~~~~~~~~~H~~~----~~~~~~~a~~Wl~~rf~G~~~~ 288 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGA----AFASAPDALAWLDDRFAGKPAT 288 (290)
T ss_pred CEEEEecCCCChhhh----hhcCcHHHHHHHHHHHCCCCCC
Confidence 999999999999632 2334567789999999876654
No 129
>PRK05855 short chain dehydrogenase; Validated
Probab=99.26 E-value=9.9e-11 Score=133.83 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=121.3
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 550 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~ 550 (732)
+|.++++..+.+. ..|.||++||.+.. ...|......| ..||.|+++|+||.+...... ..
T Consensus 11 ~g~~l~~~~~g~~----------~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~---~~--- 71 (582)
T PRK05855 11 DGVRLAVYEWGDP----------DRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK---RT--- 71 (582)
T ss_pred CCEEEEEEEcCCC----------CCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCCCCCCCCC---cc---
Confidence 7888887665331 24789999998533 34566677777 678999999999865443211 00
Q ss_pred CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcC-CHH-HHH-----------
Q 004735 551 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA-DLS-MLR----------- 614 (732)
Q Consensus 551 ~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~-d~~-~~~----------- 614 (732)
...+.++..+.+..+++.... ..++.|+|||+||.+++.++.. ++++...+..++.. +.. .+.
T Consensus 72 ~~~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (582)
T PRK05855 72 AAYTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRR 150 (582)
T ss_pred cccCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhh
Confidence 112233333333333332111 2349999999999999877764 44444444333221 100 000
Q ss_pred --hhcchhhh----------------------hhhhhhcC-------C--------------hhhhhh----cCccccCC
Q 004735 615 --AETHKFES----------------------RYIDNLVG-------S--------------EKDYYE----KSPINFVD 645 (732)
Q Consensus 615 --~~~~~~~~----------------------~~~~~~~~-------~--------------~~~~~~----~sp~~~~~ 645 (732)
........ ..+...+. . ...+.. ........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (582)
T PRK05855 151 LARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRER 230 (582)
T ss_pred hhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccC
Confidence 00000000 00000000 0 000000 00011134
Q ss_pred CCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 004735 646 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 646 ~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 714 (732)
.+++|+|+++|++|.++++.....+.+.+. ..++++++ +||... .+..+.+.+.+.+|+.+.-
T Consensus 231 ~~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 231 YTDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred CccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHHHhcc
Confidence 578999999999999999888777665443 34677776 589653 4666788888889987744
No 130
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.5e-09 Score=110.03 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=143.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l 167 (732)
.-.++|.|.| .+.+||+++... .++++++.+|.......|..+. .....+.+..++.. +..+
T Consensus 25 ~~gEgP~w~~~~~~L~w~DI~~~-----~i~r~~~~~g~~~~~~~p~~~~----------~~~~~d~~g~Lv~~--~~g~ 87 (307)
T COG3386 25 TLGEGPVWDPDRGALLWVDILGG-----RIHRLDPETGKKRVFPSPGGFS----------SGALIDAGGRLIAC--EHGV 87 (307)
T ss_pred ccccCccCcCCCCEEEEEeCCCC-----eEEEecCCcCceEEEECCCCcc----------cceeecCCCeEEEE--cccc
Confidence 3458999999 889999999543 5888888755333333333310 11122333334443 2336
Q ss_pred EEEeCCCCCCCc-eecCCCC-CCCCeEeeceeecCCCCEEEEEEe---ccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 168 YKHSIDSKDSSP-LPITPDY-GEPLVSYADGIFDPRFNRYVTVRE---DRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~---~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
++++++. +.. +.++... +.+..+.+|....|||+.++-.+. ....+ ......||+++..++. .+.+...
T Consensus 88 ~~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~-~~~~G~lyr~~p~g~~---~~l~~~~ 161 (307)
T COG3386 88 RLLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE-ERPTGSLYRVDPDGGV---VRLLDDD 161 (307)
T ss_pred EEEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc-cCCcceEEEEcCCCCE---EEeecCc
Confidence 7777765 444 4554432 333467899999999996544444 11111 1124589999986665 5555554
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeee---EEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKR---VCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~---~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
-.+.++.+|||||+.|+++.+. ..+|+.++++ .+|..... ....... +.+...+...||.++..+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~-------~~~i~r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTP-------ANRIHRYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAA 230 (307)
T ss_pred EEecCceEECCCCCEEEEEeCC-------CCeEEEEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEec
Confidence 6677889999999988877632 3458888886 23433222 2222222 667788888888765443
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
.. +...|.++++++.....+.-.....+.+.+.- . +.+.||+++.+.+
T Consensus 231 ~~--~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG-------~----~~~~L~iTs~~~~ 278 (307)
T COG3386 231 VW--GGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGG-------P----DLNTLYITSARSG 278 (307)
T ss_pred cc--CCceEEEECCCCcEEEEEECCCCCCccceEeC-------C----CcCEEEEEecCCC
Confidence 33 44678999999555555431112223333321 0 4577888887653
No 131
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=4.1e-10 Score=113.33 Aligned_cols=200 Identities=16% Similarity=0.171 Sum_probs=133.2
Q ss_pred CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEe-ccCCCCCCCccEEEEEE
Q 004735 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGY 279 (732)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~-~~~~~~~~~~~~l~v~d 279 (732)
-|.+|+|++. .+||..++.+|+ +++||++-+.+..|++||||+++||.+ +..++. +..+||+++
T Consensus 49 ~GD~IiFt~~----------DdlWe~slk~g~---~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~--~taDly~v~ 113 (668)
T COG4946 49 YGDRIIFTCC----------DDLWEYSLKDGK---PLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSL--QTADLYVVP 113 (668)
T ss_pred cCcEEEEEec----------hHHHHhhhccCC---eeEEecccceeccccCCCCCcEEEEEEEEecCCC--ccccEEEEe
Confidence 3889999987 679999999999 999999999999999999999999955 333332 567899999
Q ss_pred ecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC---CeeeEEEEeccCCeEEEecccccccCCCceeecc
Q 004735 280 ISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN---GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 356 (732)
Q Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~---g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~ 356 (732)
.+ +|+.++++-+ +. ..-.-..|+|||++++.++-.+ .+..||+++.++.+..+|.-+. .-
T Consensus 114 ~e-~Ge~kRiTyf-Gr-----~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGp------at---- 176 (668)
T COG4946 114 SE-DGEAKRITYF-GR-----RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGP------AT---- 176 (668)
T ss_pred CC-CCcEEEEEEe-cc-----ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCc------ee----
Confidence 98 8999888877 33 2223456999999776766532 3568999999988777665221 10
Q ss_pred cceeeeeecCCCCEEEEEEE----------ECC-EEEEEEEECCCC-ceEEeccCCCceEEeeEeCCEEEEEEeCCCCCc
Q 004735 357 NSYEIIQSHGEKNLIACSYR----------QNG-RSYLGILDDFGH-SLSLLDIPFTDIDNITLGNDCLFVEGASGVEPS 424 (732)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~s~----------~~g-~~~ly~~~~~~~-~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~ 424 (732)
.+.+ .++.+++..+ +.| +..||.-. ++| .-+.+-.-+..|+....-++++ |+.+.-++..
T Consensus 177 -hiv~-----~dg~ivigRntydLP~WK~YkGGtrGklWis~-d~g~tFeK~vdl~~~vS~PmIV~~Rv-YFlsD~eG~G 248 (668)
T COG4946 177 -HIVI-----KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISS-DGGKTFEKFVDLDGNVSSPMIVGERV-YFLSDHEGVG 248 (668)
T ss_pred -eEEE-----eCCEEEEccCcccCcccccccCCccceEEEEe-cCCcceeeeeecCCCcCCceEEcceE-EEEecccCcc
Confidence 0111 2334443322 122 23466543 333 3343333333443332224455 4555677888
Q ss_pred EEEEEEcCCCcceeee
Q 004735 425 SVAKVTLDDHKLKAVD 440 (732)
Q Consensus 425 ~ly~~dl~~~~~~~lt 440 (732)
.||.+|+++..+++=|
T Consensus 249 nlYSvdldGkDlrrHT 264 (668)
T COG4946 249 NLYSVDLDGKDLRRHT 264 (668)
T ss_pred ceEEeccCCchhhhcC
Confidence 9999999998876544
No 132
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.24 E-value=4.4e-11 Score=118.15 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCCCCccC-CcccHHHHHHHHCCCEEEEEcCCCC-CCCChhhHHhhccCCCcccHHHHHHHHHHHHhcC--
Q 004735 494 KPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-- 569 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 569 (732)
.+.+|||+.|...+... .....+++.|...||.|+.+.++-+ .|+|....+ .|++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence 45689999886554443 4455678888778999999998752 456655443 35899999999999873
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh--CC----CcceEEEeecCcCCHHHHHhhcch---hhh--hhhhhhc--C--Ch--
Q 004735 570 KADEKRLCITGGSAGGYTTLAALA--FR----DTFKAGASLYGVADLSMLRAETHK---FES--RYIDNLV--G--SE-- 632 (732)
Q Consensus 570 ~~d~~ri~i~G~S~GG~~a~~~~~--~p----~~~~a~v~~~~~~d~~~~~~~~~~---~~~--~~~~~~~--~--~~-- 632 (732)
....++|+|+|||.|+.-++.++. .+ ..+.++|+.+|++|...+...... +.. .....++ + +.
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 235789999999999999999987 32 679999999999986554322111 100 0000010 0 00
Q ss_pred -hhhhh----cCcc----------------------------ccCCCCCCCEEEEEeCCCCccChH-HHHHHHHHHHhCC
Q 004735 633 -KDYYE----KSPI----------------------------NFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENG 678 (732)
Q Consensus 633 -~~~~~----~sp~----------------------------~~~~~i~~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g 678 (732)
..+.. ..|+ ....++.+|+|++.+++|..||.. ..+++.+.++..-
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccccc
Confidence 00000 1111 125567889999999999999875 3455666666542
Q ss_pred C----CEEEEEeCCCCccCCCccc---HHHHHHHHHHHHH
Q 004735 679 L----PVALVEYEGEQHGFRKAEN---IKFTLEQQMVFFA 711 (732)
Q Consensus 679 ~----~~~~~~~~~~gH~~~~~~~---~~~~~~~~~~fl~ 711 (732)
. .....++||+.|.+..++. .+...+++..||+
T Consensus 264 ~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 264 NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 2 2235689999999865443 3356666676653
No 133
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.20 E-value=1.7e-09 Score=108.66 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=130.2
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
.|+|.|.+ .+.+||++... + .|+++++.++ ...+...+ +..+..+...++.+++... +.+.+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~---~--~i~~~~~~~~--~~~~~~~~--------~~~G~~~~~~~g~l~v~~~--~~~~~ 64 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPG---G--RIYRVDPDTG--EVEVIDLP--------GPNGMAFDRPDGRLYVADS--GGIAV 64 (246)
T ss_dssp EEEEEEETTTTEEEEEETTT---T--EEEEEETTTT--EEEEEESS--------SEEEEEEECTTSEEEEEET--TCEEE
T ss_pred CcceEEECCCCEEEEEEcCC---C--EEEEEECCCC--eEEEEecC--------CCceEEEEccCCEEEEEEc--CceEE
Confidence 47899999 99999999743 2 5888877733 22222211 0111112213456776653 34666
Q ss_pred EeCCCCCCCceecCCCC--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCcee
Q 004735 170 HSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYA 247 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~ 247 (732)
+|+++ ++.+.+.... ..+..+.+|.+++|||+ |++...............||+++.+ ++ .+.+..+-...+
T Consensus 65 ~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pN 137 (246)
T PF08450_consen 65 VDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPN 137 (246)
T ss_dssp EETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEE
T ss_pred EecCC--CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce---EEEEecCccccc
Confidence 69887 6666555431 11357889999999999 4444332221111112789999998 66 667766666677
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
+.+|||||+.|++.... ..+|+.++++..+. +...+.+...... .+.+..++...+|+|++. .. +...
T Consensus 138 Gi~~s~dg~~lyv~ds~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va-~~--~~~~ 206 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF-------NGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVA-DW--GGGR 206 (246)
T ss_dssp EEEEETTSSEEEEEETT-------TTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEE-EE--TTTE
T ss_pred ceEECCcchheeecccc-------cceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEE-Ec--CCCE
Confidence 89999999998776522 44599999974343 5545544322100 024677889999976554 33 3456
Q ss_pred EEEEeccCCeEEEec
Q 004735 327 LHKWIESNNEVLAIY 341 (732)
Q Consensus 327 l~~~d~~~g~~~~l~ 341 (732)
|+++++++.....|.
T Consensus 207 I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 207 IVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEECCCccEEEEEc
Confidence 999999854444443
No 134
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.19 E-value=1.2e-09 Score=119.02 Aligned_cols=209 Identities=15% Similarity=0.130 Sum_probs=125.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-----HHHHHHHHCCCEEEEEcCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-----~~~~~l~~~G~~v~~~d~rG 534 (732)
+|..+-+... .+..+-|.|... ....+-||++||.. .....++ .++.+|.++||.|+++|+||
T Consensus 163 Tpg~VV~~~~----~~eLi~Y~P~t~------~~~~~PlLiVp~~i--~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrg 230 (532)
T TIGR01838 163 TPGAVVFENE----LFQLIQYEPTTE------TVHKTPLLIVPPWI--NKYYILDLRPQNSLVRWLVEQGHTVFVISWRN 230 (532)
T ss_pred CCCeEEEECC----cEEEEEeCCCCC------cCCCCcEEEECccc--ccceeeecccchHHHHHHHHCCcEEEEEECCC
Confidence 3445555543 344455677541 22345577889863 2233332 58899999999999999997
Q ss_pred CCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHH----HHh-C-CCcceEEEeecCcC
Q 004735 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----ALA-F-RDTFKAGASLYGVA 608 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~----~~~-~-p~~~~a~v~~~~~~ 608 (732)
.+.....+ .+.....+++.++++.+.+.. +.+++.++|||+||.++.. +++ + +++++.+++++...
T Consensus 231 pg~s~~~~------~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~ 302 (532)
T TIGR01838 231 PDASQADK------TFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLL 302 (532)
T ss_pred CCcccccC------ChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCc
Confidence 54322111 011123456888899888753 4678999999999998622 233 4 77899998887766
Q ss_pred CHHHHHh---------------hcc---------------------hhhhhhhhhhc-CCh-------------------
Q 004735 609 DLSMLRA---------------ETH---------------------KFESRYIDNLV-GSE------------------- 632 (732)
Q Consensus 609 d~~~~~~---------------~~~---------------------~~~~~~~~~~~-~~~------------------- 632 (732)
|+..... ... .....++..++ ++.
T Consensus 303 Df~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~ 382 (532)
T TIGR01838 303 DFSDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGK 382 (532)
T ss_pred CCCCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHH
Confidence 5321100 000 00011111111 100
Q ss_pred -------hhhhhcC----------ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 633 -------KDYYEKS----------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 633 -------~~~~~~s----------p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+.|.+.. -...+.+|++|+|+++|++|.++|+..+..+.+.+. ..+..+++++||.
T Consensus 383 ~~~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~----~~~~~vL~~sGHi 455 (532)
T TIGR01838 383 MHNFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLG----GPKTFVLGESGHI 455 (532)
T ss_pred HHHHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC----CCEEEEECCCCCc
Confidence 0111111 012367789999999999999999998888876654 2366788999995
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.18 E-value=2.7e-08 Score=103.00 Aligned_cols=242 Identities=8% Similarity=0.010 Sum_probs=132.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+.+++..+++....++.|+++|+.+ ++... +.... . ...+.|+|||+.++...... ..|+++|+
T Consensus 38 ~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~---~--~~~~~~~~~g~~l~~~~~~~--------~~l~~~d~ 102 (300)
T TIGR03866 38 LSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSGP---D--PELFALHPNGKILYIANEDD--------NLVTVIDI 102 (300)
T ss_pred ECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCCC---C--ccEEEECCCCCEEEEEcCCC--------CeEEEEEC
Confidence 3334445656666677899999987 54433 33221 1 23467999999865543322 57999999
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
.+++. ...+..+ .......|+|||+.+++...+ ...++.+|.. +++.. ...... .....+.|
T Consensus 103 ~~~~~--~~~~~~~-~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~-~~~~~--~~~~~~-----~~~~~~~~ 164 (300)
T TIGR03866 103 ETRKV--LAEIPVG-VEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTK-TYEIV--DNVLVD-----QRPRFAEF 164 (300)
T ss_pred CCCeE--EeEeeCC-CCcceEEECCCCCEEEEEecC-------CCeEEEEeCC-CCeEE--EEEEcC-----CCccEEEE
Confidence 87651 2222212 223457899999988776522 2236667876 56542 212111 22356789
Q ss_pred CCCCc-EEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 309 SSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 309 spDg~-l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
+|||+ +++.... .+ .|+.+|+.+++. +.+....... .+.. .....+.|.+ +++.+++....+ ..|.++
T Consensus 165 s~dg~~l~~~~~~-~~--~v~i~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~s~---dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 165 TADGKELWVSSEI-GG--TVSVIDVATRKVIKKITFEIPGV-HPEA-VQPVGIKLTK---DGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred CCCCCEEEEEcCC-CC--EEEEEEcCcceeeeeeeeccccc-cccc-CCccceEECC---CCCEEEEEcCCC--CeEEEE
Confidence 99999 5555433 33 577788888764 3332110000 0000 0011233433 666666554333 357777
Q ss_pred ECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 387 DDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 387 ~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
|.++++..........+..+ ..+++..++.++.. ...|.++|++++++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKV 283 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcE
Confidence 88877765332222234444 34455555554332 23689999988774
No 136
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.18 E-value=1.8e-09 Score=101.41 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=108.6
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCC--CEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G--~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
||++||.-.+..+.....+.+++++.+ ..+.+++++- ..++..+.++.++++. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 799999855544444455677787776 4556666531 1344556666666653 2345
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchh-hhhhhhhhcC-ChhhhhhcCccccC-CCCCCCE
Q 004735 576 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF-ESRYIDNLVG-SEKDYYEKSPINFV-DKFSCPI 651 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~sp~~~~-~~i~~P~ 651 (732)
++|+|.|+||+.|.+++. ++ +++ |+++|...+.......-.. ...+....+. +...+.....+... ..-..++
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~~~ 137 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPERY 137 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCccE
Confidence 999999999999999987 54 444 8889988765543321100 0001000000 11111111111111 1223689
Q ss_pred EEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 004735 652 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 652 Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 710 (732)
++++++.|.++++..+...++. ....+.+|++|.|. +..+.+..+++|+
T Consensus 138 lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~---~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 138 LVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQ---DFEEYLPQIIAFL 186 (187)
T ss_pred EEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCc---cHHHHHHHHHHhh
Confidence 9999999999999766555542 24446678899885 5678888888886
No 137
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.17 E-value=8.9e-11 Score=105.58 Aligned_cols=206 Identities=13% Similarity=0.098 Sum_probs=123.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHH-HHCCCEEEEEcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l-~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~ 570 (732)
...-.|+++.|.- +.....|......+ ...-+.+++.|.+|.+ .+-. ....++. .-.+|...+++.+...
T Consensus 40 ~G~~~iLlipGal-Gs~~tDf~pql~~l~k~l~~TivawDPpGYG---~SrP--P~Rkf~~~ff~~Da~~avdLM~aL-- 111 (277)
T KOG2984|consen 40 HGPNYILLIPGAL-GSYKTDFPPQLLSLFKPLQVTIVAWDPPGYG---TSRP--PERKFEVQFFMKDAEYAVDLMEAL-- 111 (277)
T ss_pred CCCceeEeccccc-ccccccCCHHHHhcCCCCceEEEEECCCCCC---CCCC--CcccchHHHHHHhHHHHHHHHHHh--
Confidence 3345788888853 23344555543333 3335899999998644 3311 1111111 1256777777777654
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC---CHHHHHhh----cchh--------hhhhhhhhc----C
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA---DLSMLRAE----THKF--------ESRYIDNLV----G 630 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~---d~~~~~~~----~~~~--------~~~~~~~~~----~ 630 (732)
+.+++.|+|+|-||.+++.+++ +++.+...++..+.. +...+... ..++ +..|-.+.+ .
T Consensus 112 -k~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa 190 (277)
T KOG2984|consen 112 -KLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWA 190 (277)
T ss_pred -CCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHH
Confidence 5689999999999999999988 999888887776533 22222111 1111 111111000 0
Q ss_pred ----ChhhhhhcC----ccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHH
Q 004735 631 ----SEKDYYEKS----PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFT 702 (732)
Q Consensus 631 ----~~~~~~~~s----p~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~ 702 (732)
....+.... --..+.+++||+||+||+.|+.|+..++--+...+. -.+++++|.++|++.. ...+++
T Consensus 191 ~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~----~a~~~~~peGkHn~hL-rya~eF 265 (277)
T KOG2984|consen 191 AWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS----LAKVEIHPEGKHNFHL-RYAKEF 265 (277)
T ss_pred HHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcc----cceEEEccCCCcceee-echHHH
Confidence 000111000 012377899999999999999998777654433332 4589999999999743 455677
Q ss_pred HHHHHHHHHH
Q 004735 703 LEQQMVFFAR 712 (732)
Q Consensus 703 ~~~~~~fl~~ 712 (732)
...+++||++
T Consensus 266 nklv~dFl~~ 275 (277)
T KOG2984|consen 266 NKLVLDFLKS 275 (277)
T ss_pred HHHHHHHHhc
Confidence 7788888865
No 138
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.17 E-value=1.4e-10 Score=115.04 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEe
Q 004735 525 WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 603 (732)
Q Consensus 525 ~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~ 603 (732)
|.|+++|.||.+..... ....+.....+|+.+.++.+++...+ +++.++||||||.+++.++. +|++++++++
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999987654321 01122334588999999999887544 45999999999999999998 9999999999
Q ss_pred ecCcC---C------HHH-HHh-----hcch--------hhhh------hhhhh-cC------------C----------
Q 004735 604 LYGVA---D------LSM-LRA-----ETHK--------FESR------YIDNL-VG------------S---------- 631 (732)
Q Consensus 604 ~~~~~---d------~~~-~~~-----~~~~--------~~~~------~~~~~-~~------------~---------- 631 (732)
.++.. . +.. ... .... .... ..... .. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 0 000 000 0000 0000 00000 00 0
Q ss_pred ----hhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 632 ----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 632 ----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
...+...++...+.++++|+|+++|++|.++|+.....+.+.+. ..+++++++.||..
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHH
Confidence 01111222334467899999999999999999988888665554 47999999999964
No 139
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=104.38 Aligned_cols=212 Identities=16% Similarity=0.188 Sum_probs=131.2
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHCCCEEEEEc--CCCCCCCCh--hh------
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSRGWAFVDVN--YGGSTGYGR--EF------ 542 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~G~~v~~~d--~rG~~g~g~--~~------ 542 (732)
.+..-+|.|+... .+++.|++.++-|.........-.. .-+.....|++|+.|| .||..--|. +|
T Consensus 27 ~Mtf~vylPp~a~----~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 27 SMTFGVYLPPDAP----RGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ceEEEEecCCCcc----cCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 3555667776532 3667899999999732222211122 3344556799999999 676321111 11
Q ss_pred ---HHhhccCCCc--ccHHHHHHHHHHHHh--cCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHH
Q 004735 543 ---RERLLGRWGI--VDVNDCCSCATFLVG--SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 614 (732)
Q Consensus 543 ---~~~~~~~~~~--~~~~D~~~~i~~l~~--~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~ 614 (732)
.++....|.. .+++-+..-+-.++. .-.+|+.+++|.||||||+-|+.... .|.+++.+.+++|+.+....
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c- 181 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC- 181 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC-
Confidence 1111111211 122223333333332 24688999999999999999988777 89999999999999876532
Q ss_pred hhcchhhhhhhhhhcC-ChhhhhhcCccccCCCCC---CCEEEEEeCCCCccChH-HHHHHHHHHHhCC-CCEEEEEeCC
Q 004735 615 AETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS---CPIILFQGLEDKVVPPD-QARKIYKALKENG-LPVALVEYEG 688 (732)
Q Consensus 615 ~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~---~P~Lii~G~~D~~v~~~-~~~~~~~~l~~~g-~~~~~~~~~~ 688 (732)
.|....+..++| ++..|..+++...+++.. .-+||-+|+.|....-+ -.+.+.++.++.. .++.++..+|
T Consensus 182 ----pWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~~~~v~~r~~~g 257 (283)
T KOG3101|consen 182 ----PWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLAEQLLPENLLEACKATWQAPVVFRLQEG 257 (283)
T ss_pred ----cchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhhhhcChHHHHHHhhccccccEEEEeecC
Confidence 233333444444 567888888876666554 45899999999886511 1344555555333 5788888888
Q ss_pred CCccCC
Q 004735 689 EQHGFR 694 (732)
Q Consensus 689 ~gH~~~ 694 (732)
-.|.+.
T Consensus 258 yDHSYy 263 (283)
T KOG3101|consen 258 YDHSYY 263 (283)
T ss_pred CCccee
Confidence 889753
No 140
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.1e-07 Score=94.10 Aligned_cols=283 Identities=14% Similarity=0.099 Sum_probs=162.0
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-E
Q 004735 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-T 156 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~ 156 (732)
++.-++......+..+.|+| .+.+|-+.. +++.|...-|+.++.+| +...+--. ...+..-.-.+++.+ +
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v~~-~~~~ggvaay~iD~~~G-~Lt~ln~~------~~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVVNE-PGEEGGVAAYRIDPDDG-RLTFLNRQ------TLPGSPPCYVSVDEDGR 101 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEEEe-cCCcCcEEEEEEcCCCC-eEEEeecc------ccCCCCCeEEEECCCCC
Confidence 55555666666788999999 566666654 54578888888887654 33322111 111111123345544 3
Q ss_pred EEEE-eCCCCeEEEEeCCCCCCCceecC---CCCCC-CCeE-----eeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 157 VIFS-NYKDQRLYKHSIDSKDSSPLPIT---PDYGE-PLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 157 i~f~-~~~~~~l~~~d~~~~~~~~~~lt---~~~~~-~~~~-----~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+|+ +...+.|-++.++.. |.+..+. ...+. +..+ .-...+.|||++|+.. +-. ...|+++
T Consensus 102 ~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-DLG-------~Dri~~y 172 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-DLG-------TDRIFLY 172 (346)
T ss_pred EEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-ecC-------CceEEEE
Confidence 4444 444567777777542 3332221 11000 0111 1223489999985544 322 2577888
Q ss_pred EcCCCCccccEEcc-----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeeeEEecCCCC--C
Q 004735 227 ALNGQNIQEPKVLV-----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDP--T 298 (732)
Q Consensus 227 d~~~~~~~~~~~lt-----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~~~~~~~~~--~ 298 (732)
+++.|. ..... .+.+ -....|.|+|+. ||+- .+ -.++|-++..+. .|++.++..+..-.. .
T Consensus 173 ~~~dg~---L~~~~~~~v~~G~G-PRHi~FHpn~k~-aY~v-~E-----L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 173 DLDDGK---LTPADPAEVKPGAG-PRHIVFHPNGKY-AYLV-NE-----LNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred EcccCc---cccccccccCCCCC-cceEEEcCCCcE-EEEE-ec-----cCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 887665 32221 2211 234579999985 4554 22 134566666652 377655544322110 0
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
-......+..++||+.+|.++|..+...+|.+|+.+|+++.+.....+-. ..++|.+.+ .++.|+...+++
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~------~PR~F~i~~---~g~~Liaa~q~s 312 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ------FPRDFNINP---SGRFLIAANQKS 312 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc------CCccceeCC---CCCEEEEEccCC
Confidence 00344567789999977788885666678899999998776542111111 123455543 677777777777
Q ss_pred CEEEEEEEECCCCceEEecc
Q 004735 379 GRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 379 g~~~ly~~~~~~~~~~~lt~ 398 (732)
..-.+|.+|.++|+++.+..
T Consensus 313 d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CcEEEEEEcCCCceEEeccc
Confidence 78899999999999887765
No 141
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.15 E-value=1.4e-09 Score=130.44 Aligned_cols=217 Identities=14% Similarity=0.130 Sum_probs=129.3
Q ss_pred CCCEEEEEcCCCCCccCCccc---HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcc-cHHHHHHHHHHHHhcC
Q 004735 494 KPPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSG 569 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~---~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~ 569 (732)
..|.||++||.+.....+... .+...|.++||.|+++|+ |.++... ....+... .+..+.++++.+....
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~~~-----~~~~~~l~~~i~~l~~~l~~v~~~~ 139 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDKVE-----GGMERNLADHVVALSEAIDTVKDVT 139 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcC-CCCChhH-----cCccCCHHHHHHHHHHHHHHHHHhh
Confidence 347899999985554443322 147889999999999997 3222110 00011110 1223344444444332
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEeecCcCCHHH-----HH----hh--------------cch-----
Q 004735 570 KADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-----LR----AE--------------THK----- 619 (732)
Q Consensus 570 ~~d~~ri~i~G~S~GG~~a~~~~~-~-p~~~~a~v~~~~~~d~~~-----~~----~~--------------~~~----- 619 (732)
.+++.++|||+||.+++.+++ + +++++.+++++...|+.. +. .. ...
T Consensus 140 ---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (994)
T PRK07868 140 ---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMART 216 (994)
T ss_pred ---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHH
Confidence 357999999999999988876 5 558998887555433210 00 00 000
Q ss_pred -h--------hhhh---hhhhcC-----C---------hh---------------hhhhcCcc-----------ccCCCC
Q 004735 620 -F--------ESRY---IDNLVG-----S---------EK---------------DYYEKSPI-----------NFVDKF 647 (732)
Q Consensus 620 -~--------~~~~---~~~~~~-----~---------~~---------------~~~~~sp~-----------~~~~~i 647 (732)
+ ...+ +..+.+ + .. .+...+.+ ..+++|
T Consensus 217 ~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i 296 (994)
T PRK07868 217 GFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADI 296 (994)
T ss_pred HHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhC
Confidence 0 0000 000000 0 00 00000011 136788
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEE-EEeCCCCcc--CCCcccHHHHHHHHHHHHHHHhCCCCCCCCC
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL-VEYEGEQHG--FRKAENIKFTLEQQMVFFARVVGHFDVADEI 723 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~-~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 723 (732)
++|+|+++|++|.++|+..++.+.+.+.. .++ .+++++||. +......++.+..+.+||.++-+..+.++.+
T Consensus 297 ~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~~~~~~~ 371 (994)
T PRK07868 297 TCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDGDKPENI 371 (994)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCCCCCccc
Confidence 99999999999999999999988776642 355 577899996 3445667889999999999988765555443
No 142
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.14 E-value=2.3e-10 Score=115.02 Aligned_cols=226 Identities=18% Similarity=0.092 Sum_probs=131.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCCh
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 540 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~ 540 (732)
...+++.....+.++..+++.|...... ....+.|+|++.||. +.....|.+.++++++.||.|..++..|+..-+.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~-~~~~~~PlvvlshG~--Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~ 114 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGT-VALYLLPLVVLSHGS--GSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGA 114 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccc-cccCcCCeEEecCCC--CCCccchhhhHHHHhhCceEEEeccCCCcccccC
Confidence 3456666553577888899999763210 001478999999997 3446788899999999999999999998643222
Q ss_pred hhHHhhccC----CCcccHHHHHHHHHHHHhc---C----CCCCCcEEEEEcChHHHHHHHHHh-CCC---cceEEE---
Q 004735 541 EFRERLLGR----WGIVDVNDCCSCATFLVGS---G----KADEKRLCITGGSAGGYTTLAALA-FRD---TFKAGA--- 602 (732)
Q Consensus 541 ~~~~~~~~~----~~~~~~~D~~~~i~~l~~~---~----~~d~~ri~i~G~S~GG~~a~~~~~-~p~---~~~a~v--- 602 (732)
.-....... .......|+...+++|++. + .+|..+|+++|||+||+.++.++. +.+ ....+.
T Consensus 115 ~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~~~~ 194 (365)
T COG4188 115 PAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCESAS 194 (365)
T ss_pred ChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHhhhhh
Confidence 211111100 0112367888888888876 3 678899999999999999999886 432 111111
Q ss_pred ---eecCcCCHHHHHhhcchhhhhhhhhhcCChh--hhhhcCcc-------ccCCCCCCCEEEEEeCCCCccChHH-HHH
Q 004735 603 ---SLYGVADLSMLRAETHKFESRYIDNLVGSEK--DYYEKSPI-------NFVDKFSCPIILFQGLEDKVVPPDQ-ARK 669 (732)
Q Consensus 603 ---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sp~-------~~~~~i~~P~Lii~G~~D~~v~~~~-~~~ 669 (732)
..-+..+...+...........-..+ .++. .-....|. .-+.+++.|++++.|..|...|+.. ...
T Consensus 195 ~~~~~~~~~~~~~l~q~~av~~~~~~~~~-rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~aP~~~~~~~ 273 (365)
T COG4188 195 RICLDPPGLNGRLLNQCAAVWLPRQAYDL-RDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFAPPVTEQIR 273 (365)
T ss_pred hcccCCCCcChhhhccccccccchhhhcc-ccccceeeeeccCCcccccccccceeeecceeeecccccccCCccccccc
Confidence 11111222221111100000000000 0000 00011111 2366788999999999999766642 333
Q ss_pred HHHHHHhCCCCEEEEEeCCCCcc
Q 004735 670 IYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+..|.. ....+...+++.|-
T Consensus 274 ~f~~l~g--~~k~~~~vp~a~h~ 294 (365)
T COG4188 274 PFGYLPG--ALKYLRLVPGATHF 294 (365)
T ss_pred ccccCCc--chhheeecCCCccc
Confidence 3333332 23468888999994
No 143
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.14 E-value=5.1e-10 Score=117.84 Aligned_cols=190 Identities=19% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC------Chh-hHHh------hc------cCC---
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY------GRE-FRER------LL------GRW--- 550 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~------g~~-~~~~------~~------~~~--- 550 (732)
.+.|+|||.||. +.....+...+..||++||+|++++.|-.... ... .... .. ...
T Consensus 98 ~~~PvvIFSHGl--gg~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGL--GGSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--T--T--TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCC--CcchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 568999999997 34456677889999999999999999843221 110 0000 00 000
Q ss_pred ---------CcccHHHHHHHHHHHHh--------------------cCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEE
Q 004735 551 ---------GIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 601 (732)
Q Consensus 551 ---------~~~~~~D~~~~i~~l~~--------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~ 601 (732)
-.....|+..+++.|.+ ++.+|.++|+++|||+||.+++.++....+|+++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~~ 255 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKAG 255 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--EE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcceE
Confidence 00115566677776653 1456788999999999999999999877889999
Q ss_pred EeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 602 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 602 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
|++.|..-.. + .+. ...++.|+|+|+.+.= .-..+...+.+ +...+...
T Consensus 256 I~LD~W~~Pl------------------~-~~~---------~~~i~~P~L~InSe~f--~~~~~~~~~~~-~~~~~~~~ 304 (379)
T PF03403_consen 256 ILLDPWMFPL------------------G-DEI---------YSKIPQPLLFINSESF--QWWENIFRMKK-VISNNKES 304 (379)
T ss_dssp EEES---TTS--------------------GGG---------GGG--S-EEEEEETTT----HHHHHHHHT-T--TTS-E
T ss_pred EEeCCcccCC------------------C-ccc---------ccCCCCCEEEEECccc--CChhhHHHHHH-HhccCCCc
Confidence 9998863210 0 000 1346789999988852 22333333333 33344567
Q ss_pred EEEEeCCCCccC------CCc------------cc----HHHHHHHHHHHHHHHhC
Q 004735 682 ALVEYEGEQHGF------RKA------------EN----IKFTLEQQMVFFARVVG 715 (732)
Q Consensus 682 ~~~~~~~~gH~~------~~~------------~~----~~~~~~~~~~fl~~~l~ 715 (732)
.++.+.|..|.- ..+ .+ .+...+.+++||+++|+
T Consensus 305 ~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 305 RMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp EEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999951 111 01 23445678999999987
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.11 E-value=3.4e-08 Score=102.31 Aligned_cols=230 Identities=14% Similarity=0.033 Sum_probs=129.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++++...++.|+++|+++ ++....... ........|+|||+.++.+.... ..|+++|+.+++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t--~~~~~~~~~----~~~~~~l~~~~dg~~l~~~~~~~--------~~v~~~d~~~~~--- 64 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT--LEVTRTFPV----GQRPRGITLSKDGKLLYVCASDS--------DTIQVIDLATGE--- 64 (300)
T ss_pred cEEEEecCCCEEEEEECCC--CceEEEEEC----CCCCCceEECCCCCEEEEEECCC--------CeEEEEECCCCc---
Confidence 3566667788999999987 544333222 11224578999999865554322 578999998876
Q ss_pred cEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 236 PKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 236 ~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
... +..+.. .....|+|||+.|+... .. ...|+++|+. +++. +..+... ..+..+.|+|||++
T Consensus 65 ~~~~~~~~~~-~~~~~~~~~g~~l~~~~-~~------~~~l~~~d~~-~~~~--~~~~~~~-----~~~~~~~~~~dg~~ 128 (300)
T TIGR03866 65 VIGTLPSGPD-PELFALHPNGKILYIAN-ED------DNLVTVIDIE-TRKV--LAEIPVG-----VEPEGMAVSPDGKI 128 (300)
T ss_pred EEEeccCCCC-ccEEEECCCCCEEEEEc-CC------CCeEEEEECC-CCeE--EeEeeCC-----CCcceEEECCCCCE
Confidence 433 333322 34568999999775543 21 2359999997 5543 3333322 23457899999994
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL- 393 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~- 393 (732)
++.... . ...++.+|..+++............. +.|.+ +++.++++...++ .|+++++++++.
T Consensus 129 l~~~~~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~---------~~~s~---dg~~l~~~~~~~~--~v~i~d~~~~~~~ 192 (300)
T TIGR03866 129 VVNTSE-T-TNMAHFIDTKTYEIVDNVLVDQRPRF---------AEFTA---DGKELWVSSEIGG--TVSVIDVATRKVI 192 (300)
T ss_pred EEEEec-C-CCeEEEEeCCCCeEEEEEEcCCCccE---------EEECC---CCCEEEEEcCCCC--EEEEEEcCcceee
Confidence 444433 2 22355568777654332211111111 23332 6777777655455 466668777654
Q ss_pred EEeccCC-----Cc--eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 394 SLLDIPF-----TD--IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 394 ~~lt~~~-----~~--v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+.++... .. ...+ ..++++.+++....+ ..+.++|++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~ 241 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEV 241 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcE
Confidence 3443211 11 1122 234444544443332 3588889887764
No 145
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.09 E-value=5.8e-10 Score=102.98 Aligned_cols=231 Identities=15% Similarity=0.124 Sum_probs=135.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 543 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~ 543 (732)
..++.. ||..+.+..|...+ +.+--|++-|++ +.....++..+++++.+||.|+.+||||.++......
T Consensus 8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~-Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~ 76 (281)
T COG4757 8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGAT-GVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASL 76 (281)
T ss_pred cccccC-CCccCccccccCCC---------CCCCcEEecccC-CcchhHhHHHHHHhhccCceEEEEecccccCCCcccc
Confidence 567777 99999988884433 223233333432 3333456678888999999999999999876543322
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhh-------
Q 004735 544 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAE------- 616 (732)
Q Consensus 544 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~------- 616 (732)
....-.+..-...|+.++++++.+.. .......+|||+||.+...+..++..-.+++..++.. +......
T Consensus 77 ~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~~~k~~a~~vfG~gag-wsg~m~~~~~l~~~ 153 (281)
T COG4757 77 SGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQHPKYAAFAVFGSGAG-WSGWMGLRERLGAV 153 (281)
T ss_pred ccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccccCcccceeeEeccccc-cccchhhhhcccce
Confidence 21111111122678899999998742 2356899999999997766666773222222222211 1111000
Q ss_pred --------cchhhhhhhhh-hcC---C--------------hhhhhhcCccc-----cCCCCCCCEEEEEeCCCCccChH
Q 004735 617 --------THKFESRYIDN-LVG---S--------------EKDYYEKSPIN-----FVDKFSCPIILFQGLEDKVVPPD 665 (732)
Q Consensus 617 --------~~~~~~~~~~~-~~~---~--------------~~~~~~~sp~~-----~~~~i~~P~Lii~G~~D~~v~~~ 665 (732)
.-.+...++.. ++| + ...|...+|.. ..+.+.+|+..+...+|+.+|+.
T Consensus 154 ~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~A 233 (281)
T COG4757 154 LLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPA 233 (281)
T ss_pred eeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHH
Confidence 00011111111 111 0 01111122211 14567899999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCC----CccCCCcccHHHHHHHHHHHH
Q 004735 666 QARKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFF 710 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl 710 (732)
..+.+.+..+++ +++.+.++.. ||.-.-.+..+..+++++.||
T Consensus 234 s~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 234 SRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999998888765 6677777754 785222223367777888876
No 146
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.07 E-value=1.5e-08 Score=112.39 Aligned_cols=171 Identities=9% Similarity=0.012 Sum_probs=110.6
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC----
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN---- 267 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~---- 267 (732)
...++++||||++++|+....... .....+||+.+. ++. .++++.+.. ...|.|||||++|+|++....-
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~-gg~---~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPL-GGV---AVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeC-CCc---ceeeecCCC-CCCceECCCCCceEEEecCcceEEEe
Confidence 347789999999999997533211 123579999997 455 677877665 7889999999999998622110
Q ss_pred CCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEE---EeccCCeEEEe---
Q 004735 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK---WIESNNEVLAI--- 340 (732)
Q Consensus 268 ~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~---~d~~~g~~~~l--- 340 (732)
......+||+++++ .|+... ..+ ..+..+.|||||+ ++|+.. + +|++ +..++|+ +.|
T Consensus 425 ~~~~~gql~~~~vd-~ge~~~-----~~~----g~Issl~wSpDG~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~ 488 (591)
T PRK13616 425 RDPATGQLARTPVD-ASAVAS-----RVP----GPISELQLSRDGVRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNP 488 (591)
T ss_pred ccCCCceEEEEecc-Cchhhh-----ccC----CCcCeEEECCCCCEEEEEEC---C--EEEEEEEEeCCCCc-eeeccc
Confidence 00134578888887 565522 222 5578999999999 888763 3 4554 4445565 333
Q ss_pred ---cccccc-cCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 341 ---YSLDAE-FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 341 ---~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
.....+ .....|. ++..|+... ..+...+|.+++++...+.+..
T Consensus 489 ~~l~~~l~~~~~~l~W~-------------~~~~L~V~~-~~~~~~v~~v~vDG~~~~~~~~ 536 (591)
T PRK13616 489 REVGPGLGDTAVSLDWR-------------TGDSLVVGR-SDPEHPVWYVNLDGSNSDALPS 536 (591)
T ss_pred EEeecccCCccccceEe-------------cCCEEEEEe-cCCCCceEEEecCCccccccCC
Confidence 322222 2345566 455566554 3556779999999876655443
No 147
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.6e-06 Score=86.02 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=149.4
Q ss_pred CCeEEEEeCCCCCCCcee--cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-
Q 004735 164 DQRLYKHSIDSKDSSPLP--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV- 240 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~--lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt- 240 (732)
.+.||++++++..|+... +....+ ...-..|+|+++.|+.+..+.... .-.-|.+|.+.|+ .+.|.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~----nptyl~~~~~~~~LY~v~~~~~~g----gvaay~iD~~~G~---Lt~ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELG----NPTYLAVNPDQRHLYVVNEPGEEG----GVAAYRIDPDDGR---LTFLNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccC----CCceEEECCCCCEEEEEEecCCcC----cEEEEEEcCCCCe---EEEeec
Confidence 456888888742133221 222211 114457999999977766543221 2456777777677 55543
Q ss_pred ---cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE-EecCCC--C--Ccc-ccCcCceeCCC
Q 004735 241 ---SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV-CVAGFD--P--TIV-ESPTEPKWSSK 311 (732)
Q Consensus 241 ---~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~-~~~~~~--~--~~~-~~~~~~~wspD 311 (732)
.+.. ....+.++||+.|+-.. - ....|-++.+..+|.+.... .+.... + ++. .......+.||
T Consensus 84 ~~~~g~~-p~yvsvd~~g~~vf~An-Y------~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 84 QTLPGSP-PCYVSVDEDGRFVFVAN-Y------HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred cccCCCC-CeEEEECCCCCEEEEEE-c------cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 2222 14457899999775443 2 24558888887567664432 221111 0 000 11455678999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
|+++++.+- |.-+++.++++.|+.....+... .| .-|.+.+.|.| +++..|+..+-++.-.+|.++...+
T Consensus 156 ~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v---~~--G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 156 GRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEV---KP--GAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred CCEEEEeec--CCceEEEEEcccCcccccccccc---CC--CCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCc
Confidence 997777776 44455555665666555442211 11 12556778876 8888888888899999999998888
Q ss_pred ceEEeccC---------CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCccee
Q 004735 392 SLSLLDIP---------FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKA 438 (732)
Q Consensus 392 ~~~~lt~~---------~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~ 438 (732)
+.++|..- .....++ ...+++++|.+........+|.+|..++++.-
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 87766421 2234445 56778888888777776778999988887543
No 148
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=1.2e-07 Score=100.07 Aligned_cols=276 Identities=11% Similarity=0.115 Sum_probs=153.1
Q ss_pred cCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceeEEE--CCEEEEEe
Q 004735 87 ASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF--GDTVIFSN 161 (732)
Q Consensus 87 ~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~--~~~~~~--~~~i~f~~ 161 (732)
....+..+.++| ++.+|.+.....+.+....++.+.++| +.+.+- .+...|. ..++++ +..++..+
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-~L~~~~--------~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-TLTLLN--------SVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-EEEEEE--------EEEESSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-eeEEee--------eeccCCCCcEEEEEecCCCEEEEEE
Confidence 345778899999 888888765432457766677665532 222211 1111222 223443 44677777
Q ss_pred CCCCeEEEEeCCCCCCCceec---C------CCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 162 YKDQRLYKHSIDSKDSSPLPI---T------PDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~l---t------~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
...+.+.+++++.. +..... . +.+ ....-+.....++|||+++ |+.+.. ...|++++++..
T Consensus 106 y~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v-~v~dlG-------~D~v~~~~~~~~ 176 (345)
T PF10282_consen 106 YGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV-YVPDLG-------ADRVYVYDIDDD 176 (345)
T ss_dssp TTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE-EEEETT-------TTEEEEEEE-TT
T ss_pred ccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEE-EEEecC-------CCEEEEEEEeCC
Confidence 77888888888752 332222 1 000 0012233456799999985 554432 246777776653
Q ss_pred C--ccccE--EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCcc--ccCc
Q 004735 232 N--IQEPK--VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIV--ESPT 304 (732)
Q Consensus 232 ~--~~~~~--~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~--~~~~ 304 (732)
. .+... .+..+.+ -.+..|+|||++++.+. .. .+.|.+++++ .+|+++.+..+......+. ....
T Consensus 177 ~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~-e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVN-EL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp S-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEE-TT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred CceEEEeeccccccCCC-CcEEEEcCCcCEEEEec-CC------CCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 2 11111 1222222 34568999999775554 22 4558887776 3565544443332210000 1355
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+..+|||+.+|++++..+.-.+|.+|.++|+.+.+......-.. .+.+.+.+ +++.|+++...++.-.+|
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~------Pr~~~~s~---~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF------PRHFAFSP---DGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS------EEEEEE-T---TSSEEEEEETTTTEEEEE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC------ccEEEEeC---CCCEEEEEecCCCeEEEE
Confidence 678999999767777745566677776677877766422111011 23455554 778788777778888999
Q ss_pred EEECCCCceEEec
Q 004735 385 ILDDFGHSLSLLD 397 (732)
Q Consensus 385 ~~~~~~~~~~~lt 397 (732)
.+|.++|.++.+.
T Consensus 320 ~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 320 DIDPDTGKLTPVG 332 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEeCCCCcEEEec
Confidence 9999999887664
No 149
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.03 E-value=1.5e-07 Score=99.07 Aligned_cols=258 Identities=11% Similarity=0.067 Sum_probs=132.4
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
+++++.++.....++.|..++++.. +..+.+..... ........++|||++++...... ..|.+++++.
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~~~~~ 111 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESPL--PGSPTHISTDHQGRFLFSASYNA--------NCVSVSPLDK 111 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeecC--CCCceEEEECCCCCEEEEEEcCC--------CeEEEEEECC
Confidence 3334456666556677877777531 43332221100 01124567999999865554321 5777777763
Q ss_pred -CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee----EEecCCCCCccccCcC
Q 004735 231 -QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR----VCVAGFDPTIVESPTE 305 (732)
Q Consensus 231 -~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~----~~~~~~~~~~~~~~~~ 305 (732)
+..........+........++|||++|+... . ....|+++|++..|.+... ..... . ..+..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g----~~p~~ 179 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-L------KEDRIRLFTLSDDGHLVAQEPAEVTTVE-G----AGPRH 179 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEee-C------CCCEEEEEEECCCCcccccCCCceecCC-C----CCCce
Confidence 32100111111211223356899999886544 2 2346999999744544211 01111 1 34567
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc---cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEE
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 382 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ 382 (732)
+.|+|||+.+|+.+...+.-.+|.++..+++.+.+.. .......+.|. ..+.+.+ +++.+|.+.+.++.-.
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---~~i~~~p---dg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA---ADIHITP---DGRHLYACDRTASLIS 253 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc---eeEEECC---CCCEEEEecCCCCeEE
Confidence 8999999965566553455555555544555443321 11111223332 1244543 6666666544456666
Q ss_pred EEEEECCCCceEEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 383 LGILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 383 ly~~~~~~~~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
+|.++.+++..+.+.. .......+ ..++++.+|.+...++.-.+|.+|.+++.++
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 7777666554432221 11112233 3445666666665555556777776666653
No 150
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.03 E-value=1.8e-08 Score=87.53 Aligned_cols=169 Identities=17% Similarity=0.200 Sum_probs=110.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
+..+-+||+.||.+....+..+...+..|+.+|+.|..+++.-....... .......-+.. -.....++..|... .
T Consensus 11 g~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg-~rkPp~~~~t~-~~~~~~~~aql~~~--l 86 (213)
T COG3571 11 GPAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTG-RRKPPPGSGTL-NPEYIVAIAQLRAG--L 86 (213)
T ss_pred CCCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhcccc-CCCCcCccccC-CHHHHHHHHHHHhc--c
Confidence 34456788999987777777788888999999999999997421110000 00011111111 12334455555554 3
Q ss_pred CCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeec-CcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC
Q 004735 572 DEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLY-GVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 648 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 648 (732)
+..++++-|+||||-++.+++. +.+ +.+.+++. |+... +.++.. -..++..++
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPfhpp-------------------GKPe~~----Rt~HL~gl~ 142 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPFHPP-------------------GKPEQL----RTEHLTGLK 142 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCC-cceEEEecCccCCC-------------------CCcccc----hhhhccCCC
Confidence 5568999999999999998886 554 77777653 33211 112211 235678899
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 693 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 693 (732)
+|+||.||+.|.+-..++...+ . ...+++++++.++.|.+
T Consensus 143 tPtli~qGtrD~fGtr~~Va~y--~---ls~~iev~wl~~adHDL 182 (213)
T COG3571 143 TPTLITQGTRDEFGTRDEVAGY--A---LSDPIEVVWLEDADHDL 182 (213)
T ss_pred CCeEEeecccccccCHHHHHhh--h---cCCceEEEEeccCcccc
Confidence 9999999999998777665222 1 23478999999999975
No 151
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.01 E-value=5.7e-09 Score=97.01 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=93.0
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEE
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 577 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 577 (732)
|+++||..++....-+.++.+.+... +.|-.++.. .-++.+.+..|.+.-....+.+.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~~---------------------~P~~~~W~~~l~~~i~~~~~~~i 58 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDWD---------------------NPDLDEWVQALDQAIDAIDEPTI 58 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--T---------------------S--HHHHHHHHHHCCHC-TTTEE
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEeccccC---------------------CCCHHHHHHHHHHHHhhcCCCeE
Confidence 68899986666555555666667666 667766651 11234444444443211235699
Q ss_pred EEEcChHHHHHHHHH-h-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEE
Q 004735 578 ITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQ 655 (732)
Q Consensus 578 i~G~S~GG~~a~~~~-~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~ 655 (732)
++|||+|+.+++.++ . ...+++++++++|+..-.... . ........+. ....+..|.+++.
T Consensus 59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~--~--------------~~~~~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEP--F--------------PPELDGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHC--C--------------TCGGCCCTTS-HCCHHHCCEEEEE
T ss_pred EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccc--h--------------hhhccccccC-cccccCCCeEEEE
Confidence 999999999999999 5 788999999999985420100 0 0000011111 0112346679999
Q ss_pred eCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 656 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 656 G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+++|+.+|++.+.++.+.+.. +++.++++||-
T Consensus 122 S~nDp~vp~~~a~~~A~~l~a-----~~~~~~~~GHf 153 (171)
T PF06821_consen 122 SDNDPYVPFERAQRLAQRLGA-----ELIILGGGGHF 153 (171)
T ss_dssp ETTBSSS-HHHHHHHHHHHT------EEEEETS-TTS
T ss_pred cCCCCccCHHHHHHHHHHcCC-----CeEECCCCCCc
Confidence 999999999999999999954 89999999994
No 152
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.99 E-value=7.1e-09 Score=98.64 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=86.8
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCC
Q 004735 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGG 534 (732)
Q Consensus 456 ~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG 534 (732)
.++...+.+.+... ++ ++..++..|.. ...|++++.||++.+ ...|...++.+.++ -+.|+++|.||
T Consensus 45 ~yFdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRg 112 (343)
T KOG2564|consen 45 DYFDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRG 112 (343)
T ss_pred HhhccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccc
Confidence 34455566777664 33 67777776642 346999999998443 34555666666654 67889999998
Q ss_pred CCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeec
Q 004735 535 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLY 605 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~ 605 (732)
.+..--+..+.+. ......|+.+.++++... .+.+|+|+||||||.++...+. -|. +.+++.+.
T Consensus 113 HGeTk~~~e~dlS---~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 113 HGETKVENEDDLS---LETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred cCccccCChhhcC---HHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 7653332222221 113478888888888654 3568999999999999987765 465 55555543
No 153
>COG0627 Predicted esterase [General function prediction only]
Probab=98.98 E-value=3.6e-09 Score=107.34 Aligned_cols=221 Identities=19% Similarity=0.299 Sum_probs=142.0
Q ss_pred CCCCCEEEEEcCCCCCc-cCCcccHHHHHHHHCCCEEEEEcC--C------------CC-CCCChhhHHhhccCCCcccH
Q 004735 492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNY--G------------GS-TGYGREFRERLLGRWGIVDV 555 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~--r------------G~-~g~g~~~~~~~~~~~~~~~~ 555 (732)
+++.|+++++||-.... ....+..........|++++.+|- | |. .++-..+....... +....
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~-~~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWAS-GPYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCcccc-Cccch
Confidence 46689999999863222 112233345556677888888742 1 11 11111111111000 11122
Q ss_pred HHHH-HHHH-HHHhcCCCCCC--cEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhc----chhhhhhhh
Q 004735 556 NDCC-SCAT-FLVGSGKADEK--RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET----HKFESRYID 626 (732)
Q Consensus 556 ~D~~-~~i~-~l~~~~~~d~~--ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~----~~~~~~~~~ 626 (732)
+++. .-+- .+.+....+.+ +.+|+||||||+-|+.++. ||++|+.+.+++|+.+........ ..+......
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 2222 2222 34444445553 8999999999999999998 899999999999998876332222 112223344
Q ss_pred hhcCCh--hhhhhcCccccCCC--------------CCCCEEEEEeCCCCccC--hHHHHHHHHHHHhCCCCEEEEEeCC
Q 004735 627 NLVGSE--KDYYEKSPINFVDK--------------FSCPIILFQGLEDKVVP--PDQARKIYKALKENGLPVALVEYEG 688 (732)
Q Consensus 627 ~~~~~~--~~~~~~sp~~~~~~--------------i~~P~Lii~G~~D~~v~--~~~~~~~~~~l~~~g~~~~~~~~~~ 688 (732)
.++|.. ..+.+++|...+++ ...++++-+|..|.+.. ......+.+++++.|.+..+..+++
T Consensus 210 ~~~G~~~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~ 289 (316)
T COG0627 210 AMLGPDSDPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPG 289 (316)
T ss_pred HhcCCCccccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCC
Confidence 455532 36777777766654 44678888999998754 3347889999999999999999988
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHhCC
Q 004735 689 EQHGFRKAENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 689 ~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 716 (732)
..|.+ ..+...++..+.|+.+.|+.
T Consensus 290 G~Hsw---~~w~~~l~~~~~~~a~~l~~ 314 (316)
T COG0627 290 GDHSW---YFWASQLADHLPWLAGALGL 314 (316)
T ss_pred CCcCH---HHHHHHHHHHHHHHHHHhcc
Confidence 99987 36778889999999988863
No 154
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.97 E-value=2.7e-08 Score=93.07 Aligned_cols=210 Identities=14% Similarity=0.228 Sum_probs=120.1
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER 545 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~ 545 (732)
+.-. +|..|+.|--.|++.. ..+.|.||+..|+ +..-..+..++.+|+.+||.|+.+|.--.-| .+...
T Consensus 7 i~~~-~~~~I~vwet~P~~~~-----~~~~~tiliA~Gf--~rrmdh~agLA~YL~~NGFhViRyDsl~HvG--lSsG~- 75 (294)
T PF02273_consen 7 IRLE-DGRQIRVWETRPKNNE-----PKRNNTILIAPGF--ARRMDHFAGLAEYLSANGFHVIRYDSLNHVG--LSSGD- 75 (294)
T ss_dssp EEET-TTEEEEEEEE---TTS--------S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B-----------
T ss_pred eEcC-CCCEEEEeccCCCCCC-----cccCCeEEEecch--hHHHHHHHHHHHHHhhCCeEEEecccccccc--CCCCC-
Confidence 3444 8999999999998632 4566899999997 4444567789999999999999999642211 11100
Q ss_pred hccCCCc-ccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeecCcCCHHHHHhhcchhhhhh
Q 004735 546 LLGRWGI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRY 624 (732)
Q Consensus 546 ~~~~~~~-~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~ 624 (732)
-.++.. ...+|+..+++||.+.+ ..+++++..|.-|=+|+..+...+ +...|...|+.+++........+ .|
T Consensus 76 -I~eftms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i~-lsfLitaVGVVnlr~TLe~al~~--Dy 148 (294)
T PF02273_consen 76 -INEFTMSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADIN-LSFLITAVGVVNLRDTLEKALGY--DY 148 (294)
T ss_dssp ------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHSS---G
T ss_pred -hhhcchHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhccC-cceEEEEeeeeeHHHHHHHHhcc--ch
Confidence 011110 12678999999999775 467999999999999999999664 78888888999988755432221 12
Q ss_pred hhhhc----C---------Chhhhh------hc----CccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCE
Q 004735 625 IDNLV----G---------SEKDYY------EK----SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 681 (732)
Q Consensus 625 ~~~~~----~---------~~~~~~------~~----sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 681 (732)
+...+ + +.+.|. .+ +-...++.+.+|++.+++.+|..|...+..++.+.+... .+
T Consensus 149 l~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s~--~~ 226 (294)
T PF02273_consen 149 LQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINSN--KC 226 (294)
T ss_dssp GGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----E
T ss_pred hhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCCC--ce
Confidence 22111 1 111111 11 223457788999999999999999998888887776543 57
Q ss_pred EEEEeCCCCccCCC
Q 004735 682 ALVEYEGEQHGFRK 695 (732)
Q Consensus 682 ~~~~~~~~gH~~~~ 695 (732)
+++.++|..|.+..
T Consensus 227 klysl~Gs~HdL~e 240 (294)
T PF02273_consen 227 KLYSLPGSSHDLGE 240 (294)
T ss_dssp EEEEETT-SS-TTS
T ss_pred eEEEecCccchhhh
Confidence 89999999998753
No 155
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.94 E-value=1.9e-08 Score=104.85 Aligned_cols=243 Identities=18% Similarity=0.176 Sum_probs=160.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc----cHHHHHHHHCCCEEEEEcCCC
Q 004735 459 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 459 ~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~----~~~~~~l~~~G~~v~~~d~rG 534 (732)
-+.|...+.+. ||..+...- .|.. ..++|+|++.||.-.+...+-. ...+-.|+++||.|..-|.||
T Consensus 46 y~~E~h~V~T~-DgYiL~lhR-Ip~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 46 YPVEEHEVTTE-DGYILTLHR-IPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred CceEEEEEEcc-CCeEEEEee-ecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 35788889997 998555443 3543 3678999999996444444322 235667899999999999999
Q ss_pred CCCCChhhHHhhcc--------CCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC---cceEEE
Q 004735 535 STGYGREFRERLLG--------RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD---TFKAGA 602 (732)
Q Consensus 535 ~~g~g~~~~~~~~~--------~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~---~~~a~v 602 (732)
..|++........ .|.+....|+.+.|+++++.. ..+++..+|||.|+.....++. .|+ +++..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 4555543322211 123334789999999999874 4689999999999998887776 544 789999
Q ss_pred eecCcCCHHH---HH------------------hh------------------cch-hh----hhhhhhhcC--------
Q 004735 603 SLYGVADLSM---LR------------------AE------------------THK-FE----SRYIDNLVG-------- 630 (732)
Q Consensus 603 ~~~~~~d~~~---~~------------------~~------------------~~~-~~----~~~~~~~~~-------- 630 (732)
+++|+..... .. .. ... .. ..++....|
T Consensus 194 aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~ 273 (403)
T KOG2624|consen 194 ALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNT 273 (403)
T ss_pred eecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhh
Confidence 9998763220 00 00 000 00 000000000
Q ss_pred ----------------------------------------Chhhhh-hcCccccCCCCCCCEEEEEeCCCCccChHHHHH
Q 004735 631 ----------------------------------------SEKDYY-EKSPINFVDKFSCPIILFQGLEDKVVPPDQARK 669 (732)
Q Consensus 631 ----------------------------------------~~~~~~-~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~ 669 (732)
+...|. ...|...+.++.+|+.+..|.+|.++.++....
T Consensus 274 ~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~ 353 (403)
T KOG2624|consen 274 TLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLI 353 (403)
T ss_pred cccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHH
Confidence 111121 224566688899999999999999999999998
Q ss_pred HHHHHHhCCCCEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHHh
Q 004735 670 IYKALKENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVV 714 (732)
Q Consensus 670 ~~~~l~~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l 714 (732)
+...+..... ...+.+++-.|- +......+++++.+++.++++.
T Consensus 354 ~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 354 LLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred HHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 8887776543 233336777784 2344667888999999888765
No 156
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.93 E-value=2.4e-08 Score=92.11 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=90.2
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCC
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 647 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 647 (732)
..++.+||++.|+|+||.+++.++. ++..+.+.+..+++....... +...-+- ..
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~--------------------~~~~~~~--~~-- 143 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG--------------------LPGWLPG--VN-- 143 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh--------------------ccCCccc--cC--
Confidence 4578899999999999999999988 877777777777765421110 0000000 00
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 712 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 712 (732)
..|+++.||+.|++||..-.++..+.|+..+..++++.|++.+|... .+.++.+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999754 4667888888876
No 157
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.92 E-value=2.3e-09 Score=119.50 Aligned_cols=130 Identities=25% Similarity=0.302 Sum_probs=92.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-C-CEEEEEcCC-CCCCCChhhHHhhcc
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGYGREFRERLLG 548 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G-~~v~~~d~r-G~~g~g~~~~~~~~~ 548 (732)
...++..+|.|.... +.++.|+||++|||++........ ....++.. + ++|+.+||| |..|+.........+
T Consensus 76 Edcl~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~ 150 (493)
T cd00312 76 EDCLYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPG 150 (493)
T ss_pred CcCCeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCc
Confidence 335777888887521 246789999999997654444332 23344444 3 999999999 766664432222233
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEeecCcCC
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVAD 609 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---p~~~~a~v~~~~~~d 609 (732)
++| ..|+.++++|+.++ ...|+++|.|+|+|+||++++.++.. +.+|+++|+.+|...
T Consensus 151 n~g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 151 NYG---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred chh---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 333 78999999999775 35799999999999999999888874 457999999987654
No 158
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.92 E-value=6.5e-07 Score=94.48 Aligned_cols=262 Identities=14% Similarity=0.083 Sum_probs=140.2
Q ss_pred CCEEEEEeCC---CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 154 GDTVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 154 ~~~i~f~~~~---~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
++.|+..... .+.|..+.++...+..+.+..... .+......+++|||++|+...- .. ..+.+++++.
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany-~~-------g~v~v~~l~~ 118 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANY-GG-------GSVSVFPLDD 118 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEET-TT-------TEEEEEEECT
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEc-cC-------CeEEEEEccC
Confidence 3456666553 456766666531033333322100 0111234568999998555432 21 4666666664
Q ss_pred -CCccccEEccc-----------CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-CceeeeEEecCCCC
Q 004735 231 -QNIQEPKVLVS-----------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDP 297 (732)
Q Consensus 231 -~~~~~~~~lt~-----------~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~~~~~~~~~~~~~ 297 (732)
|.......+.. .....-...++|||++|+... . ....|++++++.. +++.....+.-..
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l------G~D~v~~~~~~~~~~~l~~~~~~~~~~- 190 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-L------GADRVYVYDIDDDTGKLTPVDSIKVPP- 190 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-T------TTTEEEEEEE-TTS-TEEEEEEEECST-
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-c------CCCEEEEEEEeCCCceEEEeecccccc-
Confidence 44111111110 011223457899999886544 2 2446899988732 2354433222111
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc---cccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
. ..+..+.|+|||+.+|+.+...+.-.++.++..+++.+.+.. ......... ....+.+.+ +++.||++
T Consensus 191 G--~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~isp---dg~~lyvs 262 (345)
T PF10282_consen 191 G--SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN---APAEIAISP---DGRFLYVS 262 (345)
T ss_dssp T--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS---SEEEEEE-T---TSSEEEEE
T ss_pred C--CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC---CceeEEEec---CCCEEEEE
Confidence 1 456678999999954455443566666666655776554431 111111111 123445554 77777766
Q ss_pred EEECCEEEEEEEECCCCceEEecc---CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcceeee
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLDI---PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt~---~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~~lt 440 (732)
....+.-.+|.++.++|+++.+.. .......+ .++++++++++...+..-.+|.+|.++|.++.+.
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 655566778888777788776543 22224455 4566777788877777777899998999876554
No 159
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.90 E-value=1.1e-08 Score=98.79 Aligned_cols=192 Identities=16% Similarity=0.238 Sum_probs=122.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHh------hccCC--------C------
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRER------LLGRW--------G------ 551 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~------~~~~~--------~------ 551 (732)
+.++|+|||.||.++ ...-+....-.||++||+|.++..|-....-.-+... +...| +
T Consensus 115 ~~k~PvvvFSHGLgg--sRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~i 192 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGG--SRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFHI 192 (399)
T ss_pred CCCccEEEEeccccc--chhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEEe
Confidence 678999999999733 3455666778899999999999988532210000000 00000 0
Q ss_pred -----cccHHHHHHHHHHHHh---------------------cCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec
Q 004735 552 -----IVDVNDCCSCATFLVG---------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY 605 (732)
Q Consensus 552 -----~~~~~D~~~~i~~l~~---------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~ 605 (732)
...+.++..|+.-|.+ ++.+|..+++++|||+||.+++........|+++|+..
T Consensus 193 rNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~lD 272 (399)
T KOG3847|consen 193 RNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIALD 272 (399)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeeee
Confidence 0125566666666554 45678899999999999999998888666799999987
Q ss_pred CcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEE
Q 004735 606 GVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 685 (732)
Q Consensus 606 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~ 685 (732)
+.--+.. -.+.++++-|+|+|.-++ .. .-+.....+++...+..-.+.+
T Consensus 273 ~WM~Pl~----------------------------~~~~~~arqP~~finv~~-fQ--~~en~~vmKki~~~n~g~~~it 321 (399)
T KOG3847|consen 273 AWMFPLD----------------------------QLQYSQARQPTLFINVED-FQ--WNENLLVMKKIESQNEGNHVIT 321 (399)
T ss_pred eeecccc----------------------------hhhhhhccCCeEEEEccc-cc--chhHHHHHHhhhCCCccceEEE
Confidence 6421110 012345678999998443 21 2344455555555554447778
Q ss_pred eCCCCcc-CC--------------------C-cccHHHHHHHHHHHHHHHhCC
Q 004735 686 YEGEQHG-FR--------------------K-AENIKFTLEQQMVFFARVVGH 716 (732)
Q Consensus 686 ~~~~gH~-~~--------------------~-~~~~~~~~~~~~~fl~~~l~~ 716 (732)
+.|.=|. +. . -+..+...+..++||++++..
T Consensus 322 ~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~ 374 (399)
T KOG3847|consen 322 LDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDL 374 (399)
T ss_pred EccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhh
Confidence 8888784 11 1 123445567789999998863
No 160
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.89 E-value=1.3e-08 Score=96.36 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=114.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCccc
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 554 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~ 554 (732)
.+..++.|.. ...+|+|+++||. ......|....+++++.||+|++|+.-.... --+..+
T Consensus 33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~E 92 (307)
T PF07224_consen 33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDE 92 (307)
T ss_pred CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHH
Confidence 4556677765 6789999999996 4445566778899999999999999642211 113345
Q ss_pred HHHHHHHHHHHHhc--------CCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEeecCcCCHHHHHhhcchhhhh
Q 004735 555 VNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESR 623 (732)
Q Consensus 555 ~~D~~~~i~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~--p~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 623 (732)
+++..+.++||.+. -..+..+++++|||.||..|..++. + .-.|++.|.+.|+.-........
T Consensus 93 i~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~~t~------ 166 (307)
T PF07224_consen 93 IKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGKQTP------ 166 (307)
T ss_pred HHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCCCCC------
Confidence 78888999999763 1246689999999999999998887 4 23588888888875432211000
Q ss_pred hhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCC-------CccChH--HHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 624 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLED-------KVVPPD--QARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 624 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D-------~~v~~~--~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+.. ..+.|.. -.+..|+++|-..-- +-|.+. +-+++++..+. ++...+..+-||.
T Consensus 167 --------P~i-Lty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~---p~~hfV~~dYGHm 230 (307)
T PF07224_consen 167 --------PPI-LTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP---PCAHFVAKDYGHM 230 (307)
T ss_pred --------CCe-eecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc---cceeeeecccccc
Confidence 000 0011111 134589988843322 112222 34667776654 6666677777884
No 161
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.88 E-value=2.2e-07 Score=89.85 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=112.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCE-EEEEcCCC-----
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA-FVDVNYGG----- 534 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~-v~~~d~rG----- 534 (732)
.+...+.+...|...+.++..|++.. +..++|+|.++-|. .........+...++..-.. .+.+.|+.
T Consensus 9 ~~~~~l~s~~~~~~yri~i~~P~~~~----~~~~YpVlY~lDGn--~vf~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~ 82 (264)
T COG2819 9 FRERDLKSANTGRKYRIFIATPKNYP----KPGGYPVLYMLDGN--AVFNALTEIMLRILADLPPPVIVGIGYETILVFD 82 (264)
T ss_pred ceeEeeeecCCCcEEEEEecCCCCCC----CCCCCcEEEEecch--hhhchHHHHhhhhhhcCCCceEEEeccccccccc
Confidence 34445555535778899999998732 33448877777664 22111111122223333222 22333332
Q ss_pred ----CCCCChh----hHHhh----ccCCCccc--HHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcc
Q 004735 535 ----STGYGRE----FRERL----LGRWGIVD--VNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTF 598 (732)
Q Consensus 535 ----~~g~g~~----~~~~~----~~~~~~~~--~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~ 598 (732)
...|... ..... ...-|..+ .+.+.+-+. ++.+.+.++.++.+|+|||+||.+++.++. +|+.|
T Consensus 83 ~~~r~~DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F 162 (264)
T COG2819 83 PNRRAYDYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCF 162 (264)
T ss_pred cccccccCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchh
Confidence 1111000 00000 11112111 233333343 444558899999999999999999999988 99999
Q ss_pred eEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEE--eCCCCc------cChHHHHHH
Q 004735 599 KAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQ--GLEDKV------VPPDQARKI 670 (732)
Q Consensus 599 ~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~--G~~D~~------v~~~~~~~~ 670 (732)
...++.+|..-|... .......-.... + ..++.|+- |+.|.- ....++.+.
T Consensus 163 ~~y~~~SPSlWw~n~-------------------~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 163 GRYGLISPSLWWHNE-------------------AILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred ceeeeecchhhhCCH-------------------HHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 999999997543321 111111111111 2 34444444 433331 234456666
Q ss_pred HHHHHh-CCCCEEEEEeCCCCcc
Q 004735 671 YKALKE-NGLPVALVEYEGEQHG 692 (732)
Q Consensus 671 ~~~l~~-~g~~~~~~~~~~~gH~ 692 (732)
.+.+++ .|..+.+..+++++|+
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~ 244 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHG 244 (264)
T ss_pred HHHHhhccCCceEeccccccccc
Confidence 667777 7888899999988886
No 162
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.87 E-value=5.5e-08 Score=95.12 Aligned_cols=222 Identities=18% Similarity=0.131 Sum_probs=127.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC----CCEEEEEcCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR----GWAFVDVNYGGS 535 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~----G~~v~~~d~rG~ 535 (732)
..+.+.+.+. -..+....+|.|.+.. +..++|+++++||--+.....-. .....|... ...++.+|+--.
T Consensus 68 ~~~~~~~~~~-l~~~~~~vv~lppgy~----~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~ 141 (299)
T COG2382 68 PVEEILYSSE-LLSERRRVVYLPPGYN----PLEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDV 141 (299)
T ss_pred chhhhhhhhh-hccceeEEEEeCCCCC----ccccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCH
Confidence 3456666665 3456666778887733 47889999999995333322222 233444444 356788887311
Q ss_pred CCCChhhHHhhccCCCcccHHH-HHHHHHHHHhcCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHH
Q 004735 536 TGYGREFRERLLGRWGIVDVND-CCSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 611 (732)
Q Consensus 536 ~g~g~~~~~~~~~~~~~~~~~D-~~~~i~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~ 611 (732)
..-.+... ..... .+. ..+.+-++.+.+. -+.++-+++|.|+||.++++++. ||++|..+++.+|.++..
T Consensus 142 ----~~R~~~~~-~n~~~-~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 142 ----KKRREELH-CNEAY-WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred ----HHHHHHhc-ccHHH-HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 11111111 10000 111 2234455555532 35677899999999999999998 999999999999987754
Q ss_pred HHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004735 612 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691 (732)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH 691 (732)
-..... ..+.....+-...+.....-++...++.+.+. ...+++++.|++.|.++.+..|+| ||
T Consensus 216 ~~~~~~-------------~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gH 279 (299)
T COG2382 216 PLDTQP-------------QGEVAESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GH 279 (299)
T ss_pred cccccc-------------ccchhhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CC
Confidence 321100 00011111111112222232333344444444 447789999999999999999998 99
Q ss_pred cCCCcccHHHHHHHHHHHHHHHhC
Q 004735 692 GFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
.+ ..+-..+.++|...++
T Consensus 280 dw------~~Wr~~l~~~L~~l~~ 297 (299)
T COG2382 280 DW------AWWRPALAEGLQLLLP 297 (299)
T ss_pred ch------hHhHHHHHHHHHHhhc
Confidence 65 2444455566555543
No 163
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.86 E-value=5.2e-08 Score=96.60 Aligned_cols=208 Identities=17% Similarity=0.154 Sum_probs=122.4
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
-.+.|.++++||.-++ ...|......|+.. |..|+++|.|-. |.+..-.... .....+|+...++.......
T Consensus 49 ~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~RnH---G~Sp~~~~h~--~~~ma~dv~~Fi~~v~~~~~ 121 (315)
T KOG2382|consen 49 LERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRNH---GSSPKITVHN--YEAMAEDVKLFIDGVGGSTR 121 (315)
T ss_pred cCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEecccC---CCCccccccC--HHHHHHHHHHHHHHcccccc
Confidence 4567889999997333 36666666666654 789999999843 3332211111 22345666666666654322
Q ss_pred CCCCcEEEEEcChHH-HHHHHHHh-CCCcceEEEee--cC-cC-----CHHHHHhh------c------ch---------
Q 004735 571 ADEKRLCITGGSAGG-YTTLAALA-FRDTFKAGASL--YG-VA-----DLSMLRAE------T------HK--------- 619 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG-~~a~~~~~-~p~~~~a~v~~--~~-~~-----d~~~~~~~------~------~~--------- 619 (732)
..++.|+|||||| -+++.... .|+.+..+++. +| .. ....+... . .+
T Consensus 122 --~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~ 199 (315)
T KOG2382|consen 122 --LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEV 199 (315)
T ss_pred --cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 3579999999999 44444444 88877666654 23 11 00000000 0 00
Q ss_pred ----hhhhhhhhhc--C----------C----hhhhhh---cCccccC--CCCCCCEEEEEeCCCCccChHHHHHHHHHH
Q 004735 620 ----FESRYIDNLV--G----------S----EKDYYE---KSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKAL 674 (732)
Q Consensus 620 ----~~~~~~~~~~--~----------~----~~~~~~---~sp~~~~--~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l 674 (732)
....++..-+ + + .+.+.. .+.-..+ .....|+|+++|.++..++.++-.++...+
T Consensus 200 ~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~f 279 (315)
T KOG2382|consen 200 GFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIF 279 (315)
T ss_pred hcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhc
Confidence 0001111100 0 1 011111 1111112 445689999999999999987766665555
Q ss_pred HhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 004735 675 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 675 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 713 (732)
. .+++++++++||+. ..++.+.+.+.+.+|+.+.
T Consensus 280 p----~~e~~~ld~aGHwV-h~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 280 P----NVEVHELDEAGHWV-HLEKPEEFIESISEFLEEP 313 (315)
T ss_pred c----chheeecccCCcee-ecCCHHHHHHHHHHHhccc
Confidence 4 47999999999975 4588899999999988754
No 164
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.85 E-value=4.3e-07 Score=87.95 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=75.9
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
+.+..+||-+||.|++. ..|..+...|.+.|+.++.+||+|.+-.... .... ..-.+-...+..|+++..+
T Consensus 32 gs~~gTVv~~hGsPGSH--~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~-~~~~------~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGSH--NDFKYIRPPLDEAGIRFIGINYPGFGFTPGY-PDQQ------YTNEERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCCc--cchhhhhhHHHHcCeEEEEeCCCCCCCCCCC-cccc------cChHHHHHHHHHHHHHcCC
Confidence 34456999999998775 5677788999999999999999986432111 1111 1234455566666666666
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
+ +++.++|||.||-.|+.++. +| ..++++++|.
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 89999999999999999998 75 4577777764
No 165
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.85 E-value=3e-06 Score=87.45 Aligned_cols=251 Identities=11% Similarity=0.055 Sum_probs=130.1
Q ss_pred eEEECCEEEEEeC---------CCCeEEEEeCCCCCCCc-eecCCCCCCC---CeEeeceeecCCCCEEEEEEeccCCCC
Q 004735 150 FRIFGDTVIFSNY---------KDQRLYKHSIDSKDSSP-LPITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQDA 216 (732)
Q Consensus 150 ~~~~~~~i~f~~~---------~~~~l~~~d~~~~~~~~-~~lt~~~~~~---~~~~~~~~~spdG~~l~~~~~~~~~~~ 216 (732)
+++++..++..+. .++.|-++|+++ .+. ..|.-++.++ ...-..+.+||||++++....+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---- 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---- 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC----
Confidence 5555567776666 566899999987 433 3333221100 11124678999999865443321
Q ss_pred CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC-CCCccEEEEEEecCCCceee--eEEec
Q 004735 217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM-PWDKAELWVGYISENGDVYK--RVCVA 293 (732)
Q Consensus 217 ~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~-~~~~~~l~v~d~~~~g~~~~--~~~~~ 293 (732)
.+.+-++|+++++. +..+.- ||+..++-.+ +...+ .+....+..+.++.+|+... ..++.
T Consensus 127 ---~~~V~VvD~~~~kv--v~ei~v-----------p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~ 189 (352)
T TIGR02658 127 ---SPAVGVVDLEGKAF--VRMMDV-----------PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH 189 (352)
T ss_pred ---CCEEEEEECCCCcE--EEEEeC-----------CCCcEEEEec-CCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence 26889999998872 222321 4544332221 21111 01111222223332344221 11222
Q ss_pred CCCCCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEeccc---ccccCCCceeecc-cceeeeeecCCC
Q 004735 294 GFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---DAEFSRPLWVFGI-NSYEIIQSHGEK 368 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---~~~~~~~~w~~~~-~~~~~~~~~~~~ 368 (732)
..+ + .-...|.+++ ||+.+|.+.. ..|+.+|+.+.+....... ........|.++. ..+.+.+ ++
T Consensus 190 ~~~-~--~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---dg 259 (352)
T TIGR02658 190 PED-E--YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---AR 259 (352)
T ss_pred CCc-c--ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC---CC
Confidence 211 0 2224555566 8887777765 5688898766543322210 0011122455533 2355554 77
Q ss_pred CEEEEEEE-------ECCEEEEEEEECCCCceE-EeccCCCceEEe-eEeCCE-EEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 369 NLIACSYR-------QNGRSYLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDC-LFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 369 ~~l~~~s~-------~~g~~~ly~~~~~~~~~~-~lt~~~~~v~~~-~~~~~~-~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+++|+... .++..+|+++|.++++.. .+..+. ....+ .+.+++ ++|..... ...|.++|.++++.
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~ 334 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKE 334 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeE
Confidence 88887543 233468999999988754 444443 33344 444455 66655533 24588999888764
No 166
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.85 E-value=1e-07 Score=105.94 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=106.9
Q ss_pred eeEEECCEEEEEeC-------CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCC---CCCC
Q 004735 149 AFRIFGDTVIFSNY-------KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DALN 218 (732)
Q Consensus 149 ~~~~~~~~i~f~~~-------~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~---~~~~ 218 (732)
.++.+++.++|+.. ...+||+.+.. +..++++.+. ....|+|||||+.|+|+.+.... ....
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH-----SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC-----CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 45566778888872 23489999974 5568888652 36889999999998888653110 0001
Q ss_pred ceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCce--eeeEEe-c
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDV--YKRVCV-A 293 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~--~~~~~~-~ 293 (732)
...+||++++++++ .++ .....+..++|||||++|||+. ..+|++.-+. .+|+. ...+.+ .
T Consensus 428 ~~gql~~~~vd~ge---~~~--~~~g~Issl~wSpDG~RiA~i~---------~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 428 ATGQLARTPVDASA---VAS--RVPGPISELQLSRDGVRAAMII---------GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred CCceEEEEeccCch---hhh--ccCCCcCeEEECCCCCEEEEEE---------CCEEEEEEEEeCCCCceeecccEEeec
Confidence 13689999998887 554 2233477899999999999997 1358874332 24542 111222 2
Q ss_pred CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 294 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+.. .....+.|..|++|+..+. .+...+|++++++...+.
T Consensus 494 ~l~----~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 494 GLG----DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccC----CccccceEecCCEEEEEec--CCCCceEEEecCCccccc
Confidence 222 2346789999999665543 355679999998765554
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.83 E-value=1.7e-06 Score=91.17 Aligned_cols=245 Identities=10% Similarity=0.037 Sum_probs=123.3
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~ 235 (732)
+++.+..++.|.++++.++ ++.+.+..... ........+||||++|+...... ..|+.++++ .++
T Consensus 4 ~y~~~~~~~~I~~~~~~~~-g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~--------~~i~~~~~~~~g~--- 69 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHE-GALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPE--------FRVLSYRIADDGA--- 69 (330)
T ss_pred EEEEcCCCCCEEEEEECCC-CceeeeeEEec--CCCCccEEECCCCCEEEEEECCC--------CcEEEEEECCCCc---
Confidence 4555566778999998642 43332221100 01123457999999866554321 456666664 344
Q ss_pred cEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceee-eEEecCCCCCccccCcCceeCCCC
Q 004735 236 PKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~-~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+.+.. .........++|||++|+.... ....|.+++++.+|.... ...+.+. .......++|||
T Consensus 70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-------~~~~v~v~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~p~g 137 (330)
T PRK11028 70 LTFAAESPLPGSPTHISTDHQGRFLFSASY-------NANCVSVSPLDKDGIPVAPIQIIEGL-----EGCHSANIDPDN 137 (330)
T ss_pred eEEeeeecCCCCceEEEECCCCCEEEEEEc-------CCCeEEEEEECCCCCCCCceeeccCC-----CcccEeEeCCCC
Confidence 322211 1122345678999998865542 134588888874454321 2222222 234567899999
Q ss_pred cEEEEEeccCCeeeEEEEeccC-CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 313 ELFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
+.+|+++...+ .|.++|+++ +.............. -.+.+.+.|.+ +++.+|...+.++.-.+|.++..++
T Consensus 138 ~~l~v~~~~~~--~v~v~d~~~~g~l~~~~~~~~~~~~---g~~p~~~~~~p---dg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 138 RTLWVPCLKED--RIRLFTLSDDGHLVAQEPAEVTTVE---GAGPRHMVFHP---NQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred CEEEEeeCCCC--EEEEEEECCCCcccccCCCceecCC---CCCCceEEECC---CCCEEEEEecCCCEEEEEEEeCCCC
Confidence 95556655234 466666654 333211000000000 01123345554 7777777766677777777765455
Q ss_pred ceEEecc----CC-----CceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 392 SLSLLDI----PF-----TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 392 ~~~~lt~----~~-----~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.+.. +. .....+ ..++++++|.+......-.+|.++.+++.
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 5433211 11 111123 34566666666443333334555444433
No 168
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.82 E-value=2.2e-07 Score=100.21 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=120.6
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-----cHHHHHHHHCCCEEEEEcCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-----~~~~~~l~~~G~~v~~~d~rG 534 (732)
+|..+-|... .+..+.|.|... ...+.|+|| ++.. ......+ +.++++|.++||.|+++|.+.
T Consensus 190 TPg~VV~~n~----l~eLiqY~P~te-----~v~~~PLLI-VPp~--INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~n 257 (560)
T TIGR01839 190 TEGAVVFRNE----VLELIQYKPITE-----QQHARPLLV-VPPQ--INKFYIFDLSPEKSFVQYCLKNQLQVFIISWRN 257 (560)
T ss_pred CCCceeEECC----ceEEEEeCCCCC-----CcCCCcEEE-echh--hhhhheeecCCcchHHHHHHHcCCeEEEEeCCC
Confidence 4455555542 234445677541 123345554 4543 2212222 357899999999999999875
Q ss_pred CCCCChhhHHhhccCCCccc-HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHH----HHh-CCC-cceEEEeecCc
Q 004735 535 STGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----ALA-FRD-TFKAGASLYGV 607 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~----~~~-~p~-~~~a~v~~~~~ 607 (732)
-+. + ..+++..+ ++.+.++++.+.+. ...++|.++|+|+||.+++. +++ +++ +++.++++...
T Consensus 258 P~~---~-----~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatp 327 (560)
T TIGR01839 258 PDK---A-----HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSL 327 (560)
T ss_pred CCh---h-----hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecc
Confidence 221 1 12222211 24566777777765 34578999999999999986 444 775 79998887776
Q ss_pred CCHHHH------H--------hh---cch-------------------hhhhhhhhh-cCC-------------------
Q 004735 608 ADLSML------R--------AE---THK-------------------FESRYIDNL-VGS------------------- 631 (732)
Q Consensus 608 ~d~~~~------~--------~~---~~~-------------------~~~~~~~~~-~~~------------------- 631 (732)
.|+..- . .. ... ....+.... .++
T Consensus 328 lDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg 407 (560)
T TIGR01839 328 LDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPA 407 (560)
T ss_pred cccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchH
Confidence 654310 0 00 000 000000000 110
Q ss_pred ------hhhhhhcCccc-----------cCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 632 ------EKDYYEKSPIN-----------FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 632 ------~~~~~~~sp~~-----------~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+.|.+..... .+++|++|+|++.|+.|.++|+..+..+.+.+.. +++++..+ +||.
T Consensus 408 ~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~gs---~~~fvl~~-gGHI 481 (560)
T TIGR01839 408 AFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLGG---KRRFVLSN-SGHI 481 (560)
T ss_pred HHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcCC---CeEEEecC-CCcc
Confidence 01111111111 2678999999999999999999999888776643 67888876 4784
No 169
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.81 E-value=6.9e-07 Score=97.26 Aligned_cols=215 Identities=10% Similarity=0.008 Sum_probs=131.9
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCC---
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNM--- 268 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~--- 268 (732)
.....+||||++|+|..+..+.+ ...|+++|+++|+ ... ......+ .+..|++||+.++|++.+....
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e----~~~l~v~Dl~tg~---~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSE----WYTLRVFDLETGK---FLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSS----EEEEEEEETTTTE---EEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCc----eEEEEEEECCCCc---CcCCccccccc-ceEEEeCCCCEEEEEEeCccccccc
Confidence 34678999999999988776655 4799999999987 221 1111112 2389999999999999777542
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC-----eEEEecc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN-----EVLAIYS 342 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g-----~~~~l~~ 342 (732)
.....+||...+. ++......++.+.+.. .....+.+|+||+ +++.+........+|.+++.++ +.+.|.+
T Consensus 198 ~~~~~~v~~~~~g-t~~~~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 198 SGYPRQVYRHKLG-TPQSEDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp CGCCEEEEEEETT-S-GGG-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred CCCCcEEEEEECC-CChHhCeeEEeecCCC--cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 0014569999886 4443334555555411 1134667899999 6655555222378999999875 5666664
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEEECCCCc---eE-EeccCCC--ceEEeeEeCCEEEE
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LS-LLDIPFT--DIDNITLGNDCLFV 415 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~~~~~~~---~~-~lt~~~~--~v~~~~~~~~~~~~ 415 (732)
..... ... .-. .++.+|+.++.+. ...|+.++++... .+ .+..+.. .+..+...++.+++
T Consensus 275 ~~~~~---~~~------v~~----~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 275 REDGV---EYY------VDH----HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SSSS----EEE------EEE----ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCCce---EEE------EEc----cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 32111 000 011 4667888777544 4689999998875 33 4444433 35666555666655
Q ss_pred EEeCCCCCcEEEEEEcC
Q 004735 416 EGASGVEPSSVAKVTLD 432 (732)
Q Consensus 416 ~~~~~~~~~~ly~~dl~ 432 (732)
.. ..+...+|+++++.
T Consensus 342 ~~-~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SY-RENGSSRLRVYDLD 357 (414)
T ss_dssp EE-EETTEEEEEEEETT
T ss_pred EE-EECCccEEEEEECC
Confidence 44 45667789999998
No 170
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.79 E-value=2.7e-08 Score=100.75 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHH-HCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~-~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
...|++|++||............+...+. ..+|.|+++|+++.... .+..... .. ....+++...+++|.++..+
T Consensus 34 ~~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~~-~~-~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 34 PSRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAVN-NT-RVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHHH-hH-HHHHHHHHHHHHHHHHhcCC
Confidence 34689999999754432222223444344 46899999999865221 1211110 00 01135778888888887556
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC
Q 004735 572 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 609 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d 609 (732)
+.+++.++|||+||+++..++. ++++++.++++.|...
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 7789999999999999999998 8889999999987643
No 171
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.77 E-value=1.1e-07 Score=90.31 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=106.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC-
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK- 570 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~- 570 (732)
..+..++.+.|.|+... .|+.+...+-. -+.++.+.++|-+. .+.+. -..|+.+.++.+..+..
T Consensus 5 ~~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~~---r~~ep--------~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRGD---RFGEP--------LLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCccc---ccCCc--------ccccHHHHHHHHHHHhcc
Confidence 45556777777764332 23333332222 48899999986443 22222 24556666666665522
Q ss_pred -CCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEeec---CcCCHHHHHhhcchhhhhhhhh----------hcCCh
Q 004735 571 -ADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASLY---GVADLSMLRAETHKFESRYIDN----------LVGSE 632 (732)
Q Consensus 571 -~d~~ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~---~~~d~~~~~~~~~~~~~~~~~~----------~~~~~ 632 (732)
.-....+++||||||.+|.-++. .--...+..+.+ |..+.... ..+.-+..++.. +++|+
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~--i~~~~D~~~l~~l~~lgG~p~e~led~ 147 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQ--IHHLDDADFLADLVDLGGTPPELLEDP 147 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCC--ccCCCHHHHHHHHHHhCCCChHHhcCH
Confidence 22357999999999999988875 111123333222 21111000 000011111111 11233
Q ss_pred hhhhhcCc-----------ccc--CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccH
Q 004735 633 KDYYEKSP-----------INF--VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI 699 (732)
Q Consensus 633 ~~~~~~sp-----------~~~--~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~ 699 (732)
+.+.-.-| +.+ -..+.+|+.++.|++|..|..++...+.+..+. ..++++|+| ||.|.. .+.
T Consensus 148 El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~-~~~ 222 (244)
T COG3208 148 ELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLN-QQR 222 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehh-hhH
Confidence 32221112 111 245789999999999999988777666665543 779999986 796543 344
Q ss_pred HHHHHHHHHHHHHHh
Q 004735 700 KFTLEQQMVFFARVV 714 (732)
Q Consensus 700 ~~~~~~~~~fl~~~l 714 (732)
.+ ++.++.+.+
T Consensus 223 ~~----v~~~i~~~l 233 (244)
T COG3208 223 EE----VLARLEQHL 233 (244)
T ss_pred HH----HHHHHHHHh
Confidence 44 445555544
No 172
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.74 E-value=6.8e-07 Score=90.07 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=126.0
Q ss_pred CCCCEEEEEcCCCCCccCCccc-----HHHHHH-------HHCCCEEEEEcCCCCC-CC-ChhhHHhh----ccCCCccc
Q 004735 493 EKPPLLVKSHGGPTSEARGILN-----LSIQYW-------TSRGWAFVDVNYGGST-GY-GREFRERL----LGRWGIVD 554 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~-----~~~~~l-------~~~G~~v~~~d~rG~~-g~-g~~~~~~~----~~~~~~~~ 554 (732)
.+-.+||++|+..+........ .+.+.+ .-.-|-|+++|.-|++ |. |.+..... ..++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 3457999999964433222211 112223 2334899999988765 32 22222111 12345567
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH-------------------
Q 004735 555 VNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML------------------- 613 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~------------------- 613 (732)
+.|.+.+-+.|++...+. ++. ++|.||||+.++..+. +|+++..++.++........
T Consensus 129 i~D~V~aq~~ll~~LGI~--~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~n 206 (368)
T COG2021 129 IRDMVRAQRLLLDALGIK--KLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDWN 206 (368)
T ss_pred HHHHHHHHHHHHHhcCcc--eEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCcc
Confidence 899999988888886654 565 9999999999998887 99999988887764311100
Q ss_pred ----Hh--------------------hcchhhhhhhh-----------------hhc---C-------Chhhh-------
Q 004735 614 ----RA--------------------ETHKFESRYID-----------------NLV---G-------SEKDY------- 635 (732)
Q Consensus 614 ----~~--------------------~~~~~~~~~~~-----------------~~~---~-------~~~~~------- 635 (732)
+. ....+..++.. .++ + ++..|
T Consensus 207 ~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~al 286 (368)
T COG2021 207 GGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRAL 286 (368)
T ss_pred CCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 00 00001111111 000 0 11111
Q ss_pred hhcCcccc-------CCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC-CCCcc-CCCcccHHHHHHHH
Q 004735 636 YEKSPINF-------VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE-GEQHG-FRKAENIKFTLEQQ 706 (732)
Q Consensus 636 ~~~sp~~~-------~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~-~~gH~-~~~~~~~~~~~~~~ 706 (732)
...++... ++++++|+|++.-+.|...|+++.+++.+.|+..+. +++++ ..||. |.. ........+
T Consensus 287 d~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~--e~~~~~~~i 361 (368)
T COG2021 287 DYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLV--ESEAVGPLI 361 (368)
T ss_pred HhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhc--chhhhhHHH
Confidence 11222222 677899999999999999999999999999998765 54444 56885 332 123344555
Q ss_pred HHHHH
Q 004735 707 MVFFA 711 (732)
Q Consensus 707 ~~fl~ 711 (732)
..||+
T Consensus 362 ~~fL~ 366 (368)
T COG2021 362 RKFLA 366 (368)
T ss_pred HHHhh
Confidence 55554
No 173
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.72 E-value=9e-06 Score=82.52 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=142.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECC-EEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~ 166 (732)
..+.++.|+| ++.++... .++...+|..... .....+... ........+.++ ..++....++.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~--~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS----GDGTIKVWDLETG--ELLRTLKGH---------TGPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred CCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCC--CcEEEEecC---------CcceeEEEECCCCCEEEEEcCCCe
Confidence 4567899998 66665543 2466666665432 111111111 111223333333 24445455788
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~ 246 (732)
|+++++.++ .....+... ........|+|+++.++.... ...|.++++.+++. ...+.......
T Consensus 75 i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~--~~~~~~~~~~i 138 (289)
T cd00200 75 IRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSSSR---------DKTIKVWDVETGKC--LTTLRGHTDWV 138 (289)
T ss_pred EEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEecC---------CCeEEEEECCCcEE--EEEeccCCCcE
Confidence 999999862 233344432 234566789999876444431 15788899886551 23333334456
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
....|+|+++.|+... ....|+++|+. +++. ...+.... ..+..+.|+|+++ +++... .+
T Consensus 139 ~~~~~~~~~~~l~~~~--------~~~~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~l~~~~~--~~-- 199 (289)
T cd00200 139 NSVAFSPDGTFVASSS--------QDGTIKLWDLR-TGKC--VATLTGHT----GEVNSVAFSPDGEKLLSSSS--DG-- 199 (289)
T ss_pred EEEEEcCcCCEEEEEc--------CCCcEEEEEcc-cccc--ceeEecCc----cccceEEECCCcCEEEEecC--CC--
Confidence 6789999988665443 12348999987 5554 33334433 4677899999998 555443 23
Q ss_pred eEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCce
Q 004735 326 NLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDI 403 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v 403 (732)
.|..+|..+++..... ....... .+.|. +++.+++....++.-.+ ++..+++ ...+......+
T Consensus 200 ~i~i~d~~~~~~~~~~~~~~~~i~---------~~~~~----~~~~~~~~~~~~~~i~i--~~~~~~~~~~~~~~~~~~i 264 (289)
T cd00200 200 TIKLWDLSTGKCLGTLRGHENGVN---------SVAFS----PDGYLLASGSEDGTIRV--WDLRTGECVQTLSGHTNSV 264 (289)
T ss_pred cEEEEECCCCceecchhhcCCceE---------EEEEc----CCCcEEEEEcCCCcEEE--EEcCCceeEEEccccCCcE
Confidence 4666777665544333 2211122 22333 33555656554555444 4555444 34444334455
Q ss_pred EEe-eEeCCEEEEEE
Q 004735 404 DNI-TLGNDCLFVEG 417 (732)
Q Consensus 404 ~~~-~~~~~~~~~~~ 417 (732)
..+ ..+++..++.+
T Consensus 265 ~~~~~~~~~~~l~~~ 279 (289)
T cd00200 265 TSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEECCCCCEEEEe
Confidence 555 33333444443
No 174
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.71 E-value=4e-08 Score=102.31 Aligned_cols=129 Identities=24% Similarity=0.324 Sum_probs=89.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCc-ccHHHHHHHHCC-CEEEEEcCCCC-CCC--ChhhH--H
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI-LNLSIQYWTSRG-WAFVDVNYGGS-TGY--GREFR--E 544 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~-~~~~~~~l~~~G-~~v~~~d~rG~-~g~--g~~~~--~ 544 (732)
...+..-+|.|+. +.++.|+||++|||........ .......|+++| ++|+.+|||-. -|+ ..++. +
T Consensus 77 EDCL~LNIwaP~~------~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~ 150 (491)
T COG2272 77 EDCLYLNIWAPEV------PAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150 (491)
T ss_pred ccceeEEeeccCC------CCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccc
Confidence 3447778888972 2567899999999853322211 112346788888 99999999942 222 11111 1
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEeecCcCC
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVAD 609 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~p~---~~~a~v~~~~~~d 609 (732)
....+ .-+.|+..+++|+.++ -.-|+++|.|+|+|+|++.++.+++.|. +|+.+|+.+|...
T Consensus 151 ~~~~n---~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASN---LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccccc---ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 11112 2379999999999875 4569999999999999999999988444 7777888887653
No 175
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.70 E-value=8.8e-07 Score=89.28 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=115.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh--hHHhhc-----
Q 004735 475 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE--FRERLL----- 547 (732)
Q Consensus 475 i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~--~~~~~~----- 547 (732)
.+..++.|...+ .+..|++|.+.|.+..........++.-|.+.|++.+.+..+-.+..-.. ....+.
T Consensus 77 a~~~~~~P~~~~-----~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl 151 (348)
T PF09752_consen 77 ARFQLLLPKRWD-----SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQRRSSLRNVSDL 151 (348)
T ss_pred eEEEEEECCccc-----cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEecccccccChhHhhcccccchhHH
Confidence 344455676521 34579999999963322222223347777888999888874321111000 000000
Q ss_pred cCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC--------------CHHH
Q 004735 548 GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA--------------DLSM 612 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~--------------d~~~ 612 (732)
-..|...+.+....+.|+.+++. .+++|.|.||||.+|..+++ .|..+..+-++++.+ +|..
T Consensus 152 ~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~ 228 (348)
T PF09752_consen 152 FVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDA 228 (348)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHH
Confidence 00233447788889999999853 58999999999999999988 888777666665433 2333
Q ss_pred HHhhcchhhhhhhhhhc------------------CChhhh----hhcCccccCCCCCC-----CEEEEEeCCCCccChH
Q 004735 613 LRAETHKFESRYIDNLV------------------GSEKDY----YEKSPINFVDKFSC-----PIILFQGLEDKVVPPD 665 (732)
Q Consensus 613 ~~~~~~~~~~~~~~~~~------------------~~~~~~----~~~sp~~~~~~i~~-----P~Lii~G~~D~~v~~~ 665 (732)
+...... ..|.+... .+.+.. ..+.-..++.+..+ .+.++.+++|..||..
T Consensus 229 L~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~ 306 (348)
T PF09752_consen 229 LEKQFED--TVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRH 306 (348)
T ss_pred HHHHhcc--cchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechh
Confidence 2222000 00000000 000000 11112233444443 3788899999999988
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 666 QARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 666 ~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+...+.+.+. ..++.++++ ||.
T Consensus 307 ~v~~Lq~~WP----GsEvR~l~g-GHV 328 (348)
T PF09752_consen 307 GVLSLQEIWP----GSEVRYLPG-GHV 328 (348)
T ss_pred hcchHHHhCC----CCeEEEecC-CcE
Confidence 8776666554 558888887 995
No 176
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.68 E-value=6.3e-07 Score=83.29 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--C-------CCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~-------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
+....+|+.+++..| +|+|+|.|+.++..+++ . -..|+.+|+++|+.......
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~-------------- 153 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKL-------------- 153 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchh--------------
Confidence 556667888899999 99999999999988875 1 11479999999986432100
Q ss_pred cCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 004735 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 708 (732)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 708 (732)
.-..+...+++|.|-+.|+.|.+++...+..+++..... .+ +.-.+||.+. +.....+.+.+
T Consensus 154 ----------~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~v-l~HpggH~VP---~~~~~~~~i~~ 215 (230)
T KOG2551|consen 154 ----------DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TV-LEHPGGHIVP---NKAKYKEKIAD 215 (230)
T ss_pred ----------hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eE-EecCCCccCC---CchHHHHHHHH
Confidence 011234468899999999999999999999999988753 34 4445689764 44578888999
Q ss_pred HHHHHhC
Q 004735 709 FFARVVG 715 (732)
Q Consensus 709 fl~~~l~ 715 (732)
|+...+.
T Consensus 216 fi~~~~~ 222 (230)
T KOG2551|consen 216 FIQSFLQ 222 (230)
T ss_pred HHHHHHH
Confidence 9988876
No 177
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.64 E-value=1.3e-05 Score=82.84 Aligned_cols=233 Identities=14% Similarity=0.113 Sum_probs=118.8
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCcc------
Q 004735 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQ------ 234 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~--~~~~------ 234 (732)
..|.+-++|.. ++...|...-+.-.-+..|.+|++||++|+++.+-+.. ....+.+|..+ |++.
T Consensus 79 ~sG~vRIWdtt---~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-----fg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 79 VSGKVRIWDTT---QKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-----FGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred CcCcEEEEecc---CcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-----eeEEEEecCCCccceeeccceeE
Confidence 34567777764 22333322211012245788999999999998764321 24455554332 1100
Q ss_pred --------ccEE-cccC----------------------CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC
Q 004735 235 --------EPKV-LVSG----------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 283 (732)
Q Consensus 235 --------~~~~-lt~~----------------------~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~ 283 (732)
.+-+ +|.+ ..|++..++||||++.+-+.. ..+++++|=. +
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs--------Dgki~iyDGk-t 221 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS--------DGKIYIYDGK-T 221 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC--------CccEEEEcCC-C
Confidence 0222 2221 135566789999998877663 3458999866 6
Q ss_pred CceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEE-Eeccccc-cc--CCCceeecccc
Q 004735 284 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDA-EF--SRPLWVFGINS 358 (732)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~-~~--~~~~w~~~~~~ 358 (732)
|+. +-.+.+.+ ...+++..+.||||++ ++-.+.+ ..+-++|..+.+.. .+.-+.. +. -+-.|.
T Consensus 222 ge~--vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaD----kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq----- 289 (603)
T KOG0318|consen 222 GEK--VGELEDSD-AHKGSIFALSWSPDSTQFLTVSAD----KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ----- 289 (603)
T ss_pred ccE--EEEecCCC-CccccEEEEEECCCCceEEEecCC----ceEEEEEeeccceEEEeecCCchhceEEEEEEe-----
Confidence 654 34444322 2228899999999998 6544333 23444455555432 2321111 00 011232
Q ss_pred eeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
++ .|+-.+ -.|.-..+ +++... ++.+....-.+..+ ..+++..+|.++-. ..|..++..+|.-
T Consensus 290 --------kd-~lItVS-l~G~in~l--n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 290 --------KD-HLITVS-LSGTINYL--NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSWDSGSGTS 354 (603)
T ss_pred --------CC-eEEEEE-cCcEEEEe--cccCCChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEEecCCccc
Confidence 22 333222 34444433 443433 33344445567777 44555555555432 3566666666654
Q ss_pred eee
Q 004735 437 KAV 439 (732)
Q Consensus 437 ~~l 439 (732)
-+|
T Consensus 355 ~~~ 357 (603)
T KOG0318|consen 355 DRL 357 (603)
T ss_pred ccc
Confidence 433
No 178
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.64 E-value=6.5e-06 Score=77.12 Aligned_cols=205 Identities=9% Similarity=0.002 Sum_probs=122.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-CEEEEEeCCCCe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQR 166 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~~i~f~~~~~~~ 166 (732)
+.+..+.+-. |++.|- . +|+|...||-.... ...+++... .-.....+.+ +.=+++...+++
T Consensus 84 kNVtaVgF~~dgrWMyT-g---seDgt~kIWdlR~~---~~qR~~~~~---------spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYT-G---SEDGTVKIWDLRSL---SCQRNYQHN---------SPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred CceEEEEEeecCeEEEe-c---CCCceEEEEeccCc---ccchhccCC---------CCcceEEecCCcceEEeecCCCc
Confidence 4455566654 444433 2 25688788766433 122222111 0122333333 244567667889
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-cccEEcc---cC
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QEPKVLV---SG 242 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~lt---~~ 242 (732)
|+++|+... .-.++|.+++ ..........|||+.++.... +.+.|++++-++.. +....++ ..
T Consensus 148 irvWDl~~~-~c~~~liPe~---~~~i~sl~v~~dgsml~a~nn---------kG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 148 IRVWDLGEN-SCTHELIPED---DTSIQSLTVMPDGSMLAAANN---------KGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred EEEEEccCC-ccccccCCCC---CcceeeEEEcCCCcEEEEecC---------CccEEEEEccCCCccccceEhhheecc
Confidence 999999762 3456677663 455677789999999887744 36888888876431 0112222 23
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
........+|||+|+||-.+.+ ..+++++.+ +- ++-...+.+.. +.+.+..||.||+.+++... .
T Consensus 215 ~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~-~~-~kle~~l~gh~----rWvWdc~FS~dg~YlvTass-d 279 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSD--------KTVKIWNTD-DF-FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS-D 279 (311)
T ss_pred cceEEEEEECCCCcEEEeecCC--------ceEEEEecC-Cc-eeeEEEeecCC----ceEEeeeeccCccEEEecCC-C
Confidence 3455577899999999977633 346777766 33 33345566665 56678899999995556554 4
Q ss_pred CeeeEEEEeccCCeEEE
Q 004735 323 GFWNLHKWIESNNEVLA 339 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~ 339 (732)
+..+|| ++..++..+
T Consensus 280 ~~~rlW--~~~~~k~v~ 294 (311)
T KOG0315|consen 280 HTARLW--DLSAGKEVR 294 (311)
T ss_pred Cceeec--ccccCceee
Confidence 555565 555555433
No 179
>PRK10115 protease 2; Provisional
Probab=98.63 E-value=4e-06 Score=95.94 Aligned_cols=220 Identities=9% Similarity=-0.015 Sum_probs=131.3
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
.......|||||++|+|..+..+++ ..+|+++|+.+|+.- ...+. +.. ....|+|||+.|+|...+... +
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E----~~~l~v~d~~tg~~l-~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~-~- 196 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRR----QYGIRFRNLETGNWY-PELLD-NVE--PSFVWANDSWTFYYVRKHPVT-L- 196 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcE----EEEEEEEECCCCCCC-Ccccc-Ccc--eEEEEeeCCCEEEEEEecCCC-C-
Confidence 4566778999999999987766555 489999999987610 12222 212 348999999999999864321 1
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee-CCCCc-EEEEEeccCCeeeEEEEe--ccCCeEEEecccccc
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW-SSKGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAE 346 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w-spDg~-l~~~~~~~~g~~~l~~~d--~~~g~~~~l~~~~~~ 346 (732)
...+||+.++. ++......++.+.+ ....-..| +.|++ +++.+.. .....++.++ ..+++.+.+......
T Consensus 197 ~~~~v~~h~lg-t~~~~d~lv~~e~~----~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (686)
T PRK10115 197 LPYQVWRHTIG-TPASQDELVYEEKD----DTFYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKD 270 (686)
T ss_pred CCCEEEEEECC-CChhHCeEEEeeCC----CCEEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCC
Confidence 23679999998 66322244555443 11111234 44888 5544444 3334566555 334444444432211
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEEC-CEEEEEEEECC-CCceEEeccC--CCceEEeeEeCCEEEEEEeCCCC
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVE 422 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~-g~~~ly~~~~~-~~~~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~ 422 (732)
. ... +.. .++.+|+.++.+ ....|+.++++ .++++.|-.+ +..+..+...++.++ +......
T Consensus 271 ~---~~~-------~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~-~~~~~~g 336 (686)
T PRK10115 271 H---EYS-------LDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLV-VEERQRG 336 (686)
T ss_pred C---EEE-------EEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEE-EEEEeCC
Confidence 1 111 111 456788877754 45678888887 4566666655 345777644455454 4445566
Q ss_pred CcEEEEEEcCCCcceeee
Q 004735 423 PSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 423 ~~~ly~~dl~~~~~~~lt 440 (732)
...++.+++.+++++.|+
T Consensus 337 ~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 337 LTSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEEEcCCCCceEEec
Confidence 677999998776666554
No 180
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.62 E-value=1.5e-05 Score=80.91 Aligned_cols=234 Identities=11% Similarity=0.126 Sum_probs=131.7
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+..++++ .+++....++.++++++.+ +. ...+... ........|+|+++.++.... ...|+++
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~---------~~~i~i~ 78 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLET--GELLRTLKGH----TGPVRDVAASADGTYLASGSS---------DKTIRLW 78 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeC--CCcEEEEecC----CcceeEEEECCCCCEEEEEcC---------CCeEEEE
Confidence 3444433 3444444577899999876 43 2333332 223357789999987666544 2588889
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
++.+++. ...+...........|+|+++.|+ ... ....|.++|+. +++. ...+.... ..+..+
T Consensus 79 ~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~-~~~-------~~~~i~~~~~~-~~~~--~~~~~~~~----~~i~~~ 141 (289)
T cd00200 79 DLETGEC--VRTLTGHTSYVSSVAFSPDGRILS-SSS-------RDKTIKVWDVE-TGKC--LTTLRGHT----DWVNSV 141 (289)
T ss_pred EcCcccc--eEEEeccCCcEEEEEEcCCCCEEE-Eec-------CCCeEEEEECC-CcEE--EEEeccCC----CcEEEE
Confidence 9887541 344444444566788999977554 442 13458999987 5543 33344333 457788
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
.|+|++++++.... .+ .|..+|..+++...... .........|.+ +++.+++.+. ++. |.+
T Consensus 142 ~~~~~~~~l~~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~-~~~--i~i 203 (289)
T cd00200 142 AFSPDGTFVASSSQ-DG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------DGEKLLSSSS-DGT--IKL 203 (289)
T ss_pred EEcCcCCEEEEEcC-CC--cEEEEEccccccceeEecCccccceEEECC------------CcCEEEEecC-CCc--EEE
Confidence 99999875555543 23 46677776655433322 221222333332 5556666654 444 555
Q ss_pred EECCCCceE-EeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 386 LDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 386 ~~~~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
++..+++.. .+......+..+ ..+++.+++..+ ....++.+++.+++
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred EECCCCceecchhhcCCceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCce
Confidence 566655443 332334456666 334445544443 22457777776554
No 181
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.62 E-value=1.3e-06 Score=89.55 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=114.9
Q ss_pred EEEEc-CCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc--H--HHHHHHHCCCEEEEEcCCCCC--CCChhhHHhhccC
Q 004735 477 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGILN--L--SIQYWTSRGWAFVDVNYGGST--GYGREFRERLLGR 549 (732)
Q Consensus 477 ~~~~~-P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~--~--~~~~l~~~G~~v~~~d~rG~~--g~g~~~~~~~~~~ 549 (732)
.|+.. |.... .+.-|+||++|||+......... . ....+.. ...++++||.-.. .+|..+.
T Consensus 108 ~Wlvk~P~~~~-----pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~~~yP------ 175 (374)
T PF10340_consen 108 YWLVKAPNRFK-----PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHGHKYP------ 175 (374)
T ss_pred EEEEeCCcccC-----CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCCCcCc------
Confidence 36666 65421 23459999999985433222111 1 1112222 5689999997544 1222222
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh---CC---CcceEEEeecCcCCHHHHHhhcc-----
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FR---DTFKAGASLYGVADLSMLRAETH----- 618 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~p---~~~~a~v~~~~~~d~~~~~~~~~----- 618 (732)
....++.+..++|.+... .++|.++|-|+||.+++.++. ++ ..=+.+|+++|..++........
T Consensus 176 ---tQL~qlv~~Y~~Lv~~~G--~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~ 250 (374)
T PF10340_consen 176 ---TQLRQLVATYDYLVESEG--NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHD 250 (374)
T ss_pred ---hHHHHHHHHHHHHHhccC--CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccc
Confidence 236789999999994422 478999999999999988875 21 12478999999987762111000
Q ss_pred -----hh----hhhhhhhhcCC--hhhhhhcCccccC---------CCC--CCCEEEEEeCCCCccChHHHHHHHHHHHh
Q 004735 619 -----KF----ESRYIDNLVGS--EKDYYEKSPINFV---------DKF--SCPIILFQGLEDKVVPPDQARKIYKALKE 676 (732)
Q Consensus 619 -----~~----~~~~~~~~~~~--~~~~~~~sp~~~~---------~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~ 676 (732)
.. ...+...+.++ ++......|.... +.| ..-++|+.|+++-. ..+.+++.+.+..
T Consensus 251 n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~~ 328 (374)
T PF10340_consen 251 NEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLND 328 (374)
T ss_pred cccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHhh
Confidence 00 01111111221 1111111121111 111 25799999999844 6789999999986
Q ss_pred CCC-----CEEEEEeCCCCcc
Q 004735 677 NGL-----PVALVEYEGEQHG 692 (732)
Q Consensus 677 ~g~-----~~~~~~~~~~gH~ 692 (732)
.+. ..++.+-+++.|.
T Consensus 329 ~~~~~~~~~~nv~~~~~G~Hi 349 (374)
T PF10340_consen 329 VKPNKFSNSNNVYIDEGGIHI 349 (374)
T ss_pred cCccccCCcceEEEecCCccc
Confidence 553 3577788888885
No 182
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.62 E-value=3.5e-08 Score=111.60 Aligned_cols=127 Identities=22% Similarity=0.231 Sum_probs=81.9
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCCChhhH--Hhh-c
Q 004735 473 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR--ERL-L 547 (732)
Q Consensus 473 ~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~--~~~-~ 547 (732)
.-++.-+|.|.... ...+.|++|++|||....... ........++.++++|+.+|||-.. +|--.. ... .
T Consensus 107 DCL~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~ 181 (535)
T PF00135_consen 107 DCLYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPS 181 (535)
T ss_dssp ---EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHB
T ss_pred hHHHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCc
Confidence 45788889998733 123689999999986554443 2333455677889999999999421 110000 000 2
Q ss_pred cCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCc
Q 004735 548 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 607 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~ 607 (732)
+++| +.|...|++|+.++ -+-|+++|.|+|+|.||..+...+. ...+|+.+|+.+|.
T Consensus 182 gN~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNYG---LLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhh---hhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 3333 78999999999875 4568999999999999999987776 35689999999984
No 183
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=88.29 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHC--CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSR--GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
.|.|+++||.+.....+.. ....+... .|.|+.+|.||.+... .. ........+.+..+.+....
T Consensus 21 ~~~i~~~hg~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~g~g~s~----~~------~~~~~~~~~~~~~~~~~~~~- 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRP--VFKVLPALAARYRVIAPDLRGHGRSD----PA------GYSLSAYADDLAALLDALGL- 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHH--HHHHhhccccceEEEEecccCCCCCC----cc------cccHHHHHHHHHHHHHHhCC-
Confidence 3589999998655433333 11222221 1999999999665433 00 01112223334444443222
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCc
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 607 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~ 607 (732)
.++.++|||+||.+++.++. +|++++++++.++.
T Consensus 88 -~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 88 -EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred -CceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 34999999999999999988 99999999988864
No 184
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.59 E-value=4.2e-07 Score=88.49 Aligned_cols=168 Identities=21% Similarity=0.258 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCCCccCCccc----HHHHHHHHCCCEEEEEcCCCCC--CCChh---------h-HHhhccCC-Ccc---
Q 004735 494 KPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVNYGGST--GYGRE---------F-RERLLGRW-GIV--- 553 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~----~~~~~l~~~G~~v~~~d~rG~~--g~g~~---------~-~~~~~~~~-~~~--- 553 (732)
+++-||++||... +...|. .+...|.+.++..+.+|-+-.. +.+-. . .......| ...
T Consensus 3 ~k~riLcLHG~~~--na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQ--NAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCc--CHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 3578999999843 333333 3445555547888888843211 11110 0 11111112 211
Q ss_pred -cHHHHHHHHHHHHh----cCCCCCCcEEEEEcChHHHHHHHHHh-----C----CCcceEEEeecCcCCHHHHHhhcch
Q 004735 554 -DVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA-----F----RDTFKAGASLYGVADLSMLRAETHK 619 (732)
Q Consensus 554 -~~~D~~~~i~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----p~~~~a~v~~~~~~d~~~~~~~~~~ 619 (732)
...++.++++++.+ ++.+| +|+|+|.||.+|..++. . ...++.+|+++|+......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPfd----GvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPFD----GVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH---S----EEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCCeE----EEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 24445555555443 45444 99999999999987774 1 1358999999987532110
Q ss_pred hhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 620 FESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
........+|++|+|-++|++|.+++.+.++.+++..... .+++..++ ||.+..
T Consensus 151 ------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~vP~ 204 (212)
T PF03959_consen 151 ------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHVPR 204 (212)
T ss_dssp ------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS---
T ss_pred ------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcCcC
Confidence 0001123467899999999999999999999999988863 57777765 787643
No 185
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.57 E-value=1.8e-06 Score=82.50 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=76.2
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.||.++..+ .....+.-.. .....+++|+|+|++++.+....+ ..+-++|+++.. +..+. ...
T Consensus 40 ~l~~~~~~~--~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~-------~~v~lyd~~~~~---i~~~~--~~~ 102 (194)
T PF08662_consen 40 ELFYLNEKN--IPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP-------AKVTLYDVKGKK---IFSFG--TQP 102 (194)
T ss_pred EEEEEecCC--CccceeeccC---CCceEEEEECcCCCEEEEEEccCC-------cccEEEcCcccE---eEeec--CCC
Confidence 688887765 4444444321 123688899999999777654221 356666776443 33332 334
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEE
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFV 317 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~ 317 (732)
.+...|||+|+.|+...... -.++|.++|+. +.+. +... .. .....+.|||||+ ++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~-~~~~--i~~~--~~----~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGN-----LNGDLEFWDVR-KKKK--ISTF--EH----SDATDVEWSPDGRYLATA 161 (194)
T ss_pred ceEEEECCCCCEEEEEEccC-----CCcEEEEEECC-CCEE--eecc--cc----CcEEEEEEcCCCCEEEEE
Confidence 45689999999999876432 23568899987 4432 2222 22 3456889999999 5443
No 186
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.57 E-value=5.1e-05 Score=72.47 Aligned_cols=229 Identities=10% Similarity=0.016 Sum_probs=133.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCC---CC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKD---SS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~---~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++++..++..+.++++...+ |. .++++.. .-+..+...|+||++.+-..+ + ..|.++|+.+|
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~sw-D--------~~lrlWDl~~g 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASW-D--------GTLRLWDLATG 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEeccc-c--------ceEEEEEecCC
Confidence 566677677777777775411 22 4555553 456789999999997433333 2 57888899998
Q ss_pred CccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 232 NIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 232 ~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+ .++...+. .-+...++|||.++|+--+ + ...|-++++. ++.. .+...+.+. ..+..++|+|
T Consensus 96 ~---~t~~f~GH~~dVlsva~s~dn~qivSGS-r-------DkTiklwnt~-g~ck--~t~~~~~~~---~WVscvrfsP 158 (315)
T KOG0279|consen 96 E---STRRFVGHTKDVLSVAFSTDNRQIVSGS-R-------DKTIKLWNTL-GVCK--YTIHEDSHR---EWVSCVRFSP 158 (315)
T ss_pred c---EEEEEEecCCceEEEEecCCCceeecCC-C-------cceeeeeeec-ccEE--EEEecCCCc---CcEEEEEEcC
Confidence 7 66655444 3456789999999996544 2 2336777776 3221 333333322 4567889999
Q ss_pred CCc--EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 311 KGE--LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 311 Dg~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
... ++..+.. ...+-.+|+++-+.+.-..+... ..+.+.++ .++.+..+..++|..-|| |+
T Consensus 159 ~~~~p~Ivs~s~---DktvKvWnl~~~~l~~~~~gh~~--------~v~t~~vS----pDGslcasGgkdg~~~Lw--dL 221 (315)
T KOG0279|consen 159 NESNPIIVSASW---DKTVKVWNLRNCQLRTTFIGHSG--------YVNTVTVS----PDGSLCASGGKDGEAMLW--DL 221 (315)
T ss_pred CCCCcEEEEccC---CceEEEEccCCcchhhccccccc--------cEEEEEEC----CCCCEEecCCCCceEEEE--Ec
Confidence 864 4444333 23466678877665543322110 11234455 455666666677766565 55
Q ss_pred CCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 389 FGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.++--.--.....|..+ ..++..+++.+... .|-.+|++++.
T Consensus 222 ~~~k~lysl~a~~~v~sl~fspnrywL~~at~~----sIkIwdl~~~~ 265 (315)
T KOG0279|consen 222 NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT----SIKIWDLESKA 265 (315)
T ss_pred cCCceeEeccCCCeEeeEEecCCceeEeeccCC----ceEEEeccchh
Confidence 555432222234456666 44444444433322 37777888775
No 187
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.56 E-value=4.2e-07 Score=96.33 Aligned_cols=111 Identities=8% Similarity=-0.016 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCCCccCCcccH-HHHHHHH--CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~--~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
..|++|++||.........|.. +...|.. ..|.|+++|.+|.+... +..+. ..-....+++.+.+++|.++..
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~--~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSA--AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Ccccc--ccHHHHHHHHHHHHHHHHHhhC
Confidence 4589999999754321222332 3444432 26999999998754321 11111 0001123567778888876655
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
++.+++.|+|||+||.++..++. +|.++..++++.|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 67789999999999999999888 899999999998864
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.54 E-value=5.1e-06 Score=79.48 Aligned_cols=151 Identities=13% Similarity=0.149 Sum_probs=90.7
Q ss_pred eceeecCCCCEEEEEEecc---CCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~---~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
.+..|+|+|+.|++..... ..........||.++..+.. ...+. ...+.+...+|||+|+++|.+....+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~--- 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAWSPNGNEFAVIYGSMP--- 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEECcCCCEEEEEEccCC---
Confidence 5567999999988876522 22222346899999887765 55553 22334778999999999988863221
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCC
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 349 (732)
..+.++|++ ++. +..+.. .....+.|||+|++++.+..+.-...|..+|..+.+..... +......
T Consensus 83 ---~~v~lyd~~--~~~--i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~~~t~ 148 (194)
T PF08662_consen 83 ---AKVTLYDVK--GKK--IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHSDATD 148 (194)
T ss_pred ---cccEEEcCc--ccE--eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccCcEEE
Confidence 247777775 322 333332 23457899999994444433122245667777654432222 2222334
Q ss_pred CceeecccceeeeeecCCCCEEEEEEE
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
..|+| +|++|+....
T Consensus 149 ~~WsP------------dGr~~~ta~t 163 (194)
T PF08662_consen 149 VEWSP------------DGRYLATATT 163 (194)
T ss_pred EEEcC------------CCCEEEEEEe
Confidence 55665 7887776554
No 189
>PRK04940 hypothetical protein; Provisional
Probab=98.53 E-value=2.8e-06 Score=78.07 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=74.6
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCcc--ccCCCCCC-
Q 004735 574 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPI--NFVDKFSC- 649 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--~~~~~i~~- 649 (732)
++++|+|.|+|||.|.+++. +. + .+|+++|...+...... .++.+..|....+. ..+. ++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~-----------~ig~~~~y~~~~~~h~~eL~-~~~p 124 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEG-----------KIDRPEEYADIATKCVTNFR-EKNR 124 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHH-----------HhCCCcchhhhhHHHHHHhh-hcCc
Confidence 46999999999999999998 54 3 45777787765432211 11111112111110 0111 233
Q ss_pred -CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 650 -PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 650 -P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..+++..+.|.+.++.++.+.+... .+..+.+|+.|.|. ..++.+..+++|+.
T Consensus 125 ~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~---~fe~~l~~I~~F~~ 178 (180)
T PRK04940 125 DRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFK---NISPHLQRIKAFKT 178 (180)
T ss_pred ccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCC---CHHHHHHHHHHHHh
Confidence 3699999999999988777665422 15788999999985 56788899999884
No 190
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.51 E-value=2e-06 Score=90.23 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=55.9
Q ss_pred CCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCC-CEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHH
Q 004735 644 VDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARV 713 (732)
Q Consensus 644 ~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~ 713 (732)
+++|+ +|+|.+.|++|.++++.++..+.+.....+. ..+.++.+++||. |......++.+..+.+|+.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 67788 9999999999999999999998887643332 4467778889995 455567778889999998763
No 191
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=1.7e-05 Score=80.65 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=126.7
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccC---CCCCcccccccccCCceeEEECCEEEEEeCCCCe
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDIT---PKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~---~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~ 166 (732)
.+..+.+.|..-+.-+.. -+++..||..+-. ....+. -..+.. .-..|++.|...+|......-
T Consensus 215 ~I~sv~FHp~~plllvaG---~d~~lrifqvDGk---~N~~lqS~~l~~fPi-------~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAG---LDGTLRIFQVDGK---VNPKLQSIHLEKFPI-------QKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CceEEEecCCCceEEEec---CCCcEEEEEecCc---cChhheeeeeccCcc-------ceeeecCCCceEEEecccceE
Confidence 446788888555555543 3577778887544 222222 111111 123455556657777767778
Q ss_pred EEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce
Q 004735 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY 246 (732)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~ 246 (732)
+|.+|+.+ .+..+|.+..+-+.-....+..|||+++|+.... ...|+++...+++ ...-..-++.+
T Consensus 282 ~ysyDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~e---li~s~KieG~v 347 (514)
T KOG2055|consen 282 LYSYDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKE---LITSFKIEGVV 347 (514)
T ss_pred EEEeeccc--cccccccCCCCcccchhheeEecCCCCeEEEccc---------CceEEeehhhhhh---hhheeeeccEE
Confidence 99999988 7777777653322223455678999998776643 3689999888776 21111234566
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
....||.||+.|+... ..+++|++|+. .... +..+.+.+ . ..-...+-|++|+++.+... .|.-+
T Consensus 348 ~~~~fsSdsk~l~~~~--------~~GeV~v~nl~-~~~~--~~rf~D~G-~--v~gts~~~S~ng~ylA~GS~-~GiVN 412 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG--------GTGEVYVWNLR-QNSC--LHRFVDDG-S--VHGTSLCISLNGSYLATGSD-SGIVN 412 (514)
T ss_pred eeEEEecCCcEEEEEc--------CCceEEEEecC-Ccce--EEEEeecC-c--cceeeeeecCCCceEEeccC-cceEE
Confidence 7789999998886543 24479999998 3333 33333331 0 23346677899984334334 68888
Q ss_pred EEEEec--cCCeEEEec
Q 004735 327 LHKWIE--SNNEVLAIY 341 (732)
Q Consensus 327 l~~~d~--~~g~~~~l~ 341 (732)
||-.+- .++..+++.
T Consensus 413 IYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIK 429 (514)
T ss_pred EeccchhhccCCCCchh
Confidence 885432 234445444
No 192
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.48 E-value=4.6e-06 Score=94.13 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChh-hHHh----hccCC-------------C-ccc
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE-FRER----LLGRW-------------G-IVD 554 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~-~~~~----~~~~~-------------~-~~~ 554 (732)
..|+||++||.. .....|..+++.|+++||.|+++|+||++..... .... ..... + ...
T Consensus 448 g~P~VVllHG~~--g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGIT--GAKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCC--CCHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 468999999973 3345567788889999999999999977654221 0000 00000 0 112
Q ss_pred HHHHHHHHHHHH------hc----CCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLV------GS----GKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~------~~----~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
+.|+......+. .+ ...+..++.++||||||.++..++.
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~ 574 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIA 574 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHH
Confidence 566666666665 11 1256789999999999999998887
No 193
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=4.7e-06 Score=84.58 Aligned_cols=243 Identities=9% Similarity=0.012 Sum_probs=139.5
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++.+..+.+. .++.+...++.+-++.+++ ..-..|+.-. ..........|+|+|+..+|+..+. .-+|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDG--k~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr--------ky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDG--KVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR--------KYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecC--ccChhheeee-eccCccceeeecCCCceEEEecccc--------eEEE
Confidence 4455555544 6777777777444444443 2222444320 0122335567999999777876654 5899
Q ss_pred EEEcCCCCccccEEcccC----CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 225 AIALNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~----~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
.+|+.+.+ +..+... ..+......||||+.|++.. ..+.|+++... +++. +..+.-.
T Consensus 284 syDle~ak---~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------~~G~I~lLhak-T~el--i~s~Kie----- 344 (514)
T KOG2055|consen 284 SYDLETAK---VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------NNGHIHLLHAK-TKEL--ITSFKIE----- 344 (514)
T ss_pred Eeeccccc---cccccCCCCcccchhheeEecCCCCeEEEcc--------cCceEEeehhh-hhhh--hheeeec-----
Confidence 99999988 5554321 12344567899999988765 45568888877 6655 3333222
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+.+..+.|+.||+.++.+.. ..++|.+|+...........+..+.+.. +..+. ++. ++.+....|.
T Consensus 345 G~v~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~~~~~rf~D~G~v~gts-------~~~S~---ng~-ylA~GS~~Gi 410 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGG---TGEVYVWNLRQNSCLHRFVDDGSVHGTS-------LCISL---NGS-YLATGSDSGI 410 (514)
T ss_pred cEEeeEEEecCCcEEEEEcC---CceEEEEecCCcceEEEEeecCccceee-------eeecC---CCc-eEEeccCcce
Confidence 56788999999994444433 3379999987765443332322222211 11111 444 4444456788
Q ss_pred EEEEEEEC--CCCceEEeccC---CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 381 SYLGILDD--FGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 381 ~~ly~~~~--~~~~~~~lt~~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
.+||-.+. .++..+++..- -..|+.+ ...+.+++.++++.. ...+-++.+.+
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-knalrLVHvPS 468 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNALRLVHVPS 468 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccceEEEeccc
Confidence 89996542 23344444432 2345555 456677777776532 33444444443
No 194
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.44 E-value=1.7e-05 Score=82.10 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=109.4
Q ss_pred HhcCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec-CcCCHHHHHhh----cc-hh----hhhh---hhhhcCCh
Q 004735 566 VGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLRAE----TH-KF----ESRY---IDNLVGSE 632 (732)
Q Consensus 566 ~~~~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~-~~~d~~~~~~~----~~-~~----~~~~---~~~~~~~~ 632 (732)
.++..++.++.++.|.|==|..++.+++.++|++|++.+. .+.++...... .. .+ ...+ +...++.+
T Consensus 164 ~~~~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp 243 (367)
T PF10142_consen 164 KKKFGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTP 243 (367)
T ss_pred HhhcCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCH
Confidence 3345677899999999999999998888778999988664 44554433221 11 11 1111 11111222
Q ss_pred ---hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 633 ---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 633 ---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
+...-.+|+.+.++++.|.+++.|..|....++.+.-+++.|+. +..+..+|+.+|+... .+..+.+..|
T Consensus 244 ~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~f 316 (367)
T PF10142_consen 244 EFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRAF 316 (367)
T ss_pred HHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHHH
Confidence 34466789999999999999999999999999999999999985 5689999999998754 6788899999
Q ss_pred HHHHhCCCCCC
Q 004735 710 FARVVGHFDVA 720 (732)
Q Consensus 710 l~~~l~~~~~~ 720 (732)
+...+.+.+-|
T Consensus 317 ~~~~~~~~~lP 327 (367)
T PF10142_consen 317 YNRIQNGRPLP 327 (367)
T ss_pred HHHHHcCCCCC
Confidence 99988754443
No 195
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.43 E-value=2.1e-05 Score=79.13 Aligned_cols=225 Identities=11% Similarity=0.008 Sum_probs=130.7
Q ss_pred CceeEEE-CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~-~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
...|.+. .+.-+.+...|+.+-++++++. .....|+.. ..++...+|+|+|++|.-.+-+.. -.|
T Consensus 222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~t-------WRl-- 287 (459)
T KOG0272|consen 222 AAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDST-------WRL-- 287 (459)
T ss_pred eEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcc----hhhheeeeecCCCceeeecccccc-------hhh--
Confidence 3445554 2333445556776666666541 234456654 578899999999999776655442 344
Q ss_pred EEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 226 IALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
+|+.++. .-.+..|. ..+...+|-|||.-++--..|.- =.|+|+. +|.. +..+.+.- ..+.
T Consensus 288 WD~~tk~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~--------~RvWDlR-tgr~--im~L~gH~----k~I~ 349 (459)
T KOG0272|consen 288 WDLETKS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL--------GRVWDLR-TGRC--IMFLAGHI----KEIL 349 (459)
T ss_pred cccccch---hhHhhcccccccceeEecCCCceeeccCccch--------hheeecc-cCcE--EEEecccc----ccee
Confidence 4888776 33333333 45667899999995543332221 2455887 7744 67777764 5678
Q ss_pred CceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 305 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 305 ~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+.|||+|..+.+... .+..+|| |+......-+. |.-+.....+.|.+ ..+.+++++.-++..+||
T Consensus 350 ~V~fsPNGy~lATgs~-Dnt~kVW--DLR~r~~ly~i--------pAH~nlVS~Vk~~p---~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSS-DNTCKVW--DLRMRSELYTI--------PAHSNLVSQVKYSP---QEGYFLVTASYDNTVKIW 415 (459)
T ss_pred eEeECCCceEEeecCC-CCcEEEe--eecccccceec--------ccccchhhheEecc---cCCeEEEEcccCcceeee
Confidence 8999999973333322 3455555 44332221111 12222233344443 567788888888888888
Q ss_pred EEECCCCceEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 385 ILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 385 ~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
.- .....++.|...+..|..+ ...++.++..++
T Consensus 416 s~-~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 416 ST-RTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred cC-CCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 52 2223455666667777777 345555554443
No 196
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.43 E-value=2.1e-05 Score=80.96 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhcCCCCC--CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhh---------h
Q 004735 555 VNDCCSCATFLVGSGKADE--KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFE---------S 622 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~--~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~---------~ 622 (732)
..|+..|+.++.+...-.. -++.++|+|+|||++..++. .|-.+.+++-.++..-...-.--..... .
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 5677778888877632222 48999999999999999999 9999999998877654321100000000 0
Q ss_pred ---------hhhhhhcC---------ChhhhhhcCccc--c---CCCC-C-CCEEEEEeCCCCccChHHHHHHHHHHHhC
Q 004735 623 ---------RYIDNLVG---------SEKDYYEKSPIN--F---VDKF-S-CPIILFQGLEDKVVPPDQARKIYKALKEN 677 (732)
Q Consensus 623 ---------~~~~~~~~---------~~~~~~~~sp~~--~---~~~i-~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~ 677 (732)
.+....|. ..+.+.-+..++ + .++. + +-....|+..|..+|.++-.++++.+++.
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~l 322 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNL 322 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHc
Confidence 00000000 111111111111 0 1122 2 33566799999999999999999999999
Q ss_pred CCCEEEEEeC-----------CCCccCCCcccHHHHHHHHHHHHHHHhC
Q 004735 678 GLPVALVEYE-----------GEQHGFRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 678 g~~~~~~~~~-----------~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
|-+++++.+. +..|++.. ..+..+...+.-+.+.++
T Consensus 323 gfda~l~lIkdes~iDGkfIKnl~HGmgi--s~k~Lf~KeLp~~lek~~ 369 (403)
T PF11144_consen 323 GFDATLHLIKDESEIDGKFIKNLEHGMGI--SDKALFKKELPLMLEKLQ 369 (403)
T ss_pred CCCeEEEEecChhhccchheeccccCCCC--CHHHHHHHHhHHHHHHhh
Confidence 9999999984 34687654 335666666666655554
No 197
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.41 E-value=1.8e-05 Score=82.88 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=41.1
Q ss_pred CCCCCCCEEEEEeCCCCccChHHHHHH-------HHHHHhCCCCEEEEEeCCCCcc
Q 004735 644 VDKFSCPIILFQGLEDKVVPPDQARKI-------YKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 644 ~~~i~~P~Lii~G~~D~~v~~~~~~~~-------~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
+++|++|+.+++|..|.++|++|+..+ .+.++..|..+-+.+.+.-||-
T Consensus 293 Lr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 778999999999999999999999443 3457777877888888889993
No 198
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.39 E-value=2e-05 Score=78.55 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=111.4
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-c----ccHHHHHHHHCCCEEEEE
Q 004735 456 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-I----LNLSIQYWTSRGWAFVDV 530 (732)
Q Consensus 456 ~~~~~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~----~~~~~~~l~~~G~~v~~~ 530 (732)
.......++.+.. |+..+.++...-+. .++...||+.-|........ . ...+.....+.|.+|+.+
T Consensus 107 ~~~~~~kRv~Iq~--D~~~IDt~~I~~~~-------a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 107 DEVSSVKRVPIQY--DGVKIDTMAIHQPE-------AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred ccccceeeEEEee--CCEEEEEEEeeCCC-------CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 4445567778876 79988877765322 34567899988863322221 1 134555566779999999
Q ss_pred cCCCCCCC-ChhhHHhhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEEEe
Q 004735 531 NYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-F----RDTFKAGAS 603 (732)
Q Consensus 531 d~rG~~g~-g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~----p~~~~a~v~ 603 (732)
||||-+.+ |....+ ..+.|..++++||.++ ..+.+++|++.|||.||.++..++. + .|-++-.++
T Consensus 178 NYpGVg~S~G~~s~~--------dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~i 249 (365)
T PF05677_consen 178 NYPGVGSSTGPPSRK--------DLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLI 249 (365)
T ss_pred CCCccccCCCCCCHH--------HHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEE
Confidence 99985432 222122 2378899999999875 3567899999999999999887765 2 233443333
Q ss_pred -ecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCC
Q 004735 604 -LYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE 658 (732)
Q Consensus 604 -~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 658 (732)
--++.++.......-.-...++-.+++ .+.+.....+++.||-+++|+.+
T Consensus 250 kDRsfssl~~vas~~~~~~~~~l~~l~g-----WnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 250 KDRSFSSLAAVASQFFGPIGKLLIKLLG-----WNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHhc-----cCCCchhhhccCCCCeEEEeccc
Confidence 345555554332111111112222221 22345566677889999999874
No 199
>PTZ00421 coronin; Provisional
Probab=98.38 E-value=0.00026 Score=77.71 Aligned_cols=206 Identities=15% Similarity=0.188 Sum_probs=108.2
Q ss_pred eEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-----cccEEcccCCCceeccccCCCCCeEEEEecc
Q 004735 191 VSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QEPKVLVSGSDFYAFPRMDPRGERMAWIEWH 264 (732)
Q Consensus 191 ~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~ 264 (732)
....+..|+| |++.|+....+ ..|.++|+.++.. .....+......+....|+|++..++....
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs- 145 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG- 145 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe-
Confidence 4467788999 88876555442 4677778765420 002233333445667899998754433331
Q ss_pred CCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-eccc
Q 004735 265 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSL 343 (732)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~ 343 (732)
....|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .+ .|.++|+.+++... +...
T Consensus 146 ------~DgtVrIWDl~-tg~~--~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg--~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 146 ------ADMVVNVWDVE-RGKA--VEVIKCHS----DQITSLEWNLDGSLLCTTSK-DK--KLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred ------CCCEEEEEECC-CCeE--EEEEcCCC----CceEEEEEECCCCEEEEecC-CC--EEEEEECCCCcEEEEEecC
Confidence 13448899998 6654 44455443 56778999999995555544 34 46667887765432 2211
Q ss_pred cc-ccCCCceeecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCc--eEEeccCCCc-e-EEeeEeCCEEEEEE
Q 004735 344 DA-EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHS--LSLLDIPFTD-I-DNITLGNDCLFVEG 417 (732)
Q Consensus 344 ~~-~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~--~~~lt~~~~~-v-~~~~~~~~~~~~~~ 417 (732)
.. ......|.+ +++.++.... ......|.++|+.... ...+...... + ..+...++.+++.+
T Consensus 210 ~~~~~~~~~w~~------------~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 210 ASAKSQRCLWAK------------RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred CCCcceEEEEcC------------CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE
Confidence 10 011123332 4455544332 1112334455654432 2222211111 1 12234555666666
Q ss_pred eCCCCCcEEEEEEcCCCcc
Q 004735 418 ASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 418 ~~~~~~~~ly~~dl~~~~~ 436 (732)
+..+ ..|..+|+..+++
T Consensus 278 gkgD--g~Iriwdl~~~~~ 294 (493)
T PTZ00421 278 SKGE--GNIRCFELMNERL 294 (493)
T ss_pred EeCC--CeEEEEEeeCCce
Confidence 5333 3577777777664
No 200
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=98.38 E-value=1.2e-05 Score=90.01 Aligned_cols=263 Identities=13% Similarity=0.046 Sum_probs=137.6
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceec-CCCCCCCCeEeeceeecCCCCEEEE-EEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~spdG~~l~~-~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
.+|+|++...++|.++|.++ ..++.+ +.. ......|.|||||++|+| +.-..-.. ...||+.++.+..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG--~n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~g----~s~vYv~~L~t~~ 388 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTK--GASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLPG----KSSVYVRNLNASG 388 (912)
T ss_pred eeEEEEEcCCCeEEEEecCC--CCceEEEecC----CCceecCcCCCCCCEEEEEEeecCCCC----CceEEEEehhccC
Confidence 37999987666999999997 778877 544 345578899999999999 53322011 3689999998744
Q ss_pred ccccEEcccCCCceecccc--CCCCC-eEEEEeccCCC---CCCCccEEEEEEecCCCceeeeEE-ecCCCCCccccCcC
Q 004735 233 IQEPKVLVSGSDFYAFPRM--DPRGE-RMAWIEWHHPN---MPWDKAELWVGYISENGDVYKRVC-VAGFDPTIVESPTE 305 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~--SPDG~-~la~~~~~~~~---~~~~~~~l~v~d~~~~g~~~~~~~-~~~~~~~~~~~~~~ 305 (732)
.. +..|.- +..+-|+| ..+|. -|+|++....+ ..|....-|.+... +|+....+. +.+. + .
T Consensus 389 ~~-~vkl~v--e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~-~gkfg~p~kl~dga------~--h 456 (912)
T TIGR02171 389 SG-LVKLPV--ENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFA-NGKFGTPKKLFDGA------Y--H 456 (912)
T ss_pred CC-ceEeec--ccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEec-CCCCCCchhhhccc------c--c
Confidence 11 233321 23345777 55554 47788733222 23445567889998 787654443 3332 1 1
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccccc-CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF-SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
-..|.|.+|.++..+ -=..++.--++++++...--.++... .+.. ..+.+.-.||+--+.-+.-++...-.-..+|.
T Consensus 457 ggvs~~~~lavtga~-llr~~~~~~~~~~~~~~vwyn~eqacn~sl~-~d~~~rt~fldfgg~tg~~fvg~~y~~he~~l 534 (912)
T TIGR02171 457 GGVSEDLNLAVSGAR-LLRAHVANEDVDNGKDDVWYNGEQACNASLA-KDGSKRTLFLDFGGSTGQAFVGQKYGVHERLL 534 (912)
T ss_pred cccccCCceeeehhh-HhhhhhcccccccCccceeecchhccchhhh-ccCCcceEEEecCCccchhhccccccceeEEE
Confidence 224556556655433 10111111112223222211111100 0000 00111111221000001111111122245677
Q ss_pred EEECCCCceEEeccCCC---ceEEeeE-eCCEEEEEEeCCCCC-cEEEEEEcCCCcceeeee
Q 004735 385 ILDDFGHSLSLLDIPFT---DIDNITL-GNDCLFVEGASGVEP-SSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 385 ~~~~~~~~~~~lt~~~~---~v~~~~~-~~~~~~~~~~~~~~~-~~ly~~dl~~~~~~~lt~ 441 (732)
+.|..|+.++.+..|.+ +....+. ..+.++..-++.++. ..|.++++.++++..|-+
T Consensus 535 vads~gklv~~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~e 596 (912)
T TIGR02171 535 VADSKGKLVRAVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVE 596 (912)
T ss_pred EecCCCchhhhccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeec
Confidence 88877777777776633 2222333 245556666666654 459999999998866654
No 201
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.37 E-value=0.00011 Score=73.76 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=110.4
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccC-CCCCeEEEEeccCCCCCCCcc
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMD-PRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~S-PDG~~la~~~~~~~~~~~~~~ 273 (732)
.|.|.++...|+++.-. ...|+++++++++ .+.+.... ..+..+. +||+ |++.. . .
T Consensus 4 gp~~d~~~g~l~~~D~~--------~~~i~~~~~~~~~---~~~~~~~~--~~G~~~~~~~g~-l~v~~--~-------~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP--------GGRIYRVDPDTGE---VEVIDLPG--PNGMAFDRPDGR-LYVAD--S-------G 60 (246)
T ss_dssp EEEEETTTTEEEEEETT--------TTEEEEEETTTTE---EEEEESSS--EEEEEEECTTSE-EEEEE--T-------T
T ss_pred ceEEECCCCEEEEEEcC--------CCEEEEEECCCCe---EEEEecCC--CceEEEEccCCE-EEEEE--c-------C
Confidence 47899966666777432 2699999999887 54444332 3445566 6754 65554 1 1
Q ss_pred EEEEEEecCCCceeeeEEecCCC-CCccccCcCceeCCCCcEEEEEeccC---Ce--eeEEEEeccCCeEEEeccccccc
Q 004735 274 ELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGELFFVTDRKN---GF--WNLHKWIESNNEVLAIYSLDAEF 347 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDg~l~~~~~~~~---g~--~~l~~~d~~~g~~~~l~~~~~~~ 347 (732)
.+.++|++ +|+.+.+....... +. ..+....+++||++|+...... .. ..||+++++ ++.+.+...-...
T Consensus 61 ~~~~~d~~-~g~~~~~~~~~~~~~~~--~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p 136 (246)
T PF08450_consen 61 GIAVVDPD-TGKVTVLADLPDGGVPF--NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP 136 (246)
T ss_dssp CEEEEETT-TTEEEEEEEEETTCSCT--EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE
T ss_pred ceEEEecC-CCcEEEEeeccCCCccc--CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc
Confidence 25666887 78765444432111 11 5567889999999777654311 11 579999998 7766665332111
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC--CCce---EEe-ccCC--CceEEe-eEeCCEEEEEEe
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF--GHSL---SLL-DIPF--TDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~--~~~~---~~l-t~~~--~~v~~~-~~~~~~~~~~~~ 418 (732)
....|++ +++.||++....+. ||+++++ ++++ +.+ .... .....+ .+.++++++...
T Consensus 137 NGi~~s~------------dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 137 NGIAFSP------------DGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEET------------TSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred cceEECC------------cchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 2233443 77788876544444 6666654 4422 222 1222 235556 444566555433
Q ss_pred CCCCCcEEEEEEcCCCc
Q 004735 419 SGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 419 ~~~~~~~ly~~dl~~~~ 435 (732)
....|++++.+ |+
T Consensus 203 ---~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 203 ---GGGRIVVFDPD-GK 215 (246)
T ss_dssp ---TTTEEEEEETT-SC
T ss_pred ---CCCEEEEECCC-cc
Confidence 33589999987 44
No 202
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.36 E-value=0.00018 Score=74.42 Aligned_cols=128 Identities=9% Similarity=-0.105 Sum_probs=74.6
Q ss_pred CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCC--CccEEEE
Q 004735 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWV 277 (732)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~--~~~~l~v 277 (732)
|+++ +|+.+..... ..++|+++|.++++ +. .+..+..- .. .+||||+.||....-.+...+ ....|-+
T Consensus 11 ~~~~-v~V~d~~~~~---~~~~v~ViD~~~~~---v~g~i~~G~~P-~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v 81 (352)
T TIGR02658 11 DARR-VYVLDPGHFA---ATTQVYTIDGEAGR---VLGMTDGGFLP-NP-VVASDGSFFAHASTVYSRIARGKRTDYVEV 81 (352)
T ss_pred CCCE-EEEECCcccc---cCceEEEEECCCCE---EEEEEEccCCC-ce-eECCCCCEEEEEeccccccccCCCCCEEEE
Confidence 5565 6766543110 02689999999877 43 33333222 22 489999998766531110000 2345899
Q ss_pred EEecCCCceeeeEEecCCCC-CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 278 GYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 278 ~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+|+. +++......++.... .-.........||||+.+|+++. .....+-++|+.+++...
T Consensus 82 ~D~~-t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 82 IDPQ-THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred EECc-cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEE
Confidence 9998 776633333322210 00023447789999996666665 445678899998887543
No 203
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=1e-05 Score=81.00 Aligned_cols=197 Identities=13% Similarity=0.021 Sum_probs=107.9
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cC-CCceeccccCCCCCeEEEEeccCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SG-SDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~-~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
..+.-..||||.++++.-.- . ..+.++|.++|. .+.+- .+ .......+|-|||.+++.-+.
T Consensus 270 ~~V~yi~wSPDdryLlaCg~-~--------e~~~lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~----- 332 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGF-D--------EVLSLWDVDTGD---LRHLYPSGLGFSVSSCAWCPDGFRFVTGSP----- 332 (519)
T ss_pred CceEEEEECCCCCeEEecCc-h--------HheeeccCCcch---hhhhcccCcCCCcceeEEccCCceeEecCC-----
Confidence 34455679999998765422 1 358888999987 54443 23 233456799999999764432
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~ 347 (732)
...++..|++ +.....+. +.. . .-+..++.++||+ ++.+..+ ..|..++..+...+.+..++..+
T Consensus 333 ---dr~i~~wdlD-gn~~~~W~---gvr-~--~~v~dlait~Dgk~vl~v~~d----~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 333 ---DRTIIMWDLD-GNILGNWE---GVR-D--PKVHDLAITYDGKYVLLVTVD----KKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred ---CCcEEEecCC-cchhhccc---ccc-c--ceeEEEEEcCCCcEEEEEecc----cceeeechhhhhhhccccccCce
Confidence 2348888887 32221111 110 0 2356778899999 5554433 34666666665555444443222
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEe---ccCCCceEEeeEeCC-EEEEEEeCCCC
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLL---DIPFTDIDNITLGND-CLFVEGASGVE 422 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~l---t~~~~~v~~~~~~~~-~~~~~~~~~~~ 422 (732)
.. +..+ ++++++...-.+..-+|| |++... +++- +.+..-+.+.....+ .++..+ ..
T Consensus 399 ts---------~~iS----~d~k~~LvnL~~qei~LW--Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG---SE 460 (519)
T KOG0293|consen 399 TS---------FSIS----KDGKLALVNLQDQEIHLW--DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG---SE 460 (519)
T ss_pred eE---------EEEc----CCCcEEEEEcccCeeEEe--ecchhhHHHHhhcccccceEEEeccCCCCcceEEec---CC
Confidence 22 2222 455555555555556666 444222 2211 122333444432222 333333 33
Q ss_pred CcEEEEEEcCCCcc
Q 004735 423 PSSVAKVTLDDHKL 436 (732)
Q Consensus 423 ~~~ly~~dl~~~~~ 436 (732)
...+|.++..+|++
T Consensus 461 D~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 461 DSKVYIWHRISGKL 474 (519)
T ss_pred CceEEEEEccCCce
Confidence 46799999988875
No 204
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.35 E-value=1.3e-06 Score=85.58 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=114.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC-C
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-G 539 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~-g 539 (732)
.+...+.+. ||.+|..++..-.... .+....+||++-|..+.-.. ..+..-++.||.|+..|.+|-.|+ |
T Consensus 214 G~R~kiks~-dgneiDtmF~d~r~n~----~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPGFagSTG 284 (517)
T KOG1553|consen 214 GQRLKIKSS-DGNEIDTMFLDGRPNQ----SGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPGFAGSTG 284 (517)
T ss_pred CeEEEEeec-CCcchhheeecCCCCC----CCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCCccccCC
Confidence 356778887 8999987777554211 24556789998885221111 122334678999999999876553 2
Q ss_pred hhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh-c
Q 004735 540 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-T 617 (732)
Q Consensus 540 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~-~ 617 (732)
..+ ...+...+.+++++.++......+.|+|.|+|-||+.+++++. +|+ ++++|+-+.+-|+..+... .
T Consensus 285 ~P~--------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~rM 355 (517)
T KOG1553|consen 285 LPY--------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFRM 355 (517)
T ss_pred CCC--------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhhc
Confidence 222 2234566778889999887788899999999999999999999 997 8999999988887655322 1
Q ss_pred chhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCcc
Q 004735 618 HKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVV 662 (732)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v 662 (732)
..+........+ ..+....-...+.+.+.|+++|--.+|.++
T Consensus 356 P~~~~giV~~ai---Rnh~NLnnaell~ry~GPi~lIRRt~dEIi 397 (517)
T KOG1553|consen 356 PTFFSGIVEHAI---RNHMNLNNAELLARYKGPIRLIRRTQDEII 397 (517)
T ss_pred hHHHHHHHHHHH---HHhcccchHHHHHhhcCchhHhhhhhHhhh
Confidence 112222111111 111111122233445667777766666554
No 205
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.31 E-value=6.3e-06 Score=75.82 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=106.1
Q ss_pred EEEEEcCC-CCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 497 LLVKSHGG-PTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 497 ~vl~~HGg-~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
++|++-|- +|. ..-...+..|+++|+.|+.+|-.- -|. ...-......|+...+++..++- ..++
T Consensus 4 ~~v~~SGDgGw~---~~d~~~a~~l~~~G~~VvGvdsl~------Yfw---~~rtP~~~a~Dl~~~i~~y~~~w--~~~~ 69 (192)
T PF06057_consen 4 LAVFFSGDGGWR---DLDKQIAEALAKQGVPVVGVDSLR------YFW---SERTPEQTAADLARIIRHYRARW--GRKR 69 (192)
T ss_pred EEEEEeCCCCch---hhhHHHHHHHHHCCCeEEEechHH------HHh---hhCCHHHHHHHHHHHHHHHHHHh--CCce
Confidence 56777663 222 222347889999999999999530 011 11112234778888888877763 3579
Q ss_pred EEEEEcChHHHHHHHHHh-CCC----cceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCC-C
Q 004735 576 LCITGGSAGGYTTLAALA-FRD----TFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-C 649 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~-~p~----~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~ 649 (732)
++|+|+|+|+-+.-.+.. .|+ +++.+++++|..... |+-. ...+++....-....+...+.++. .
T Consensus 70 vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~d--------Feih-v~~wlg~~~~~~~~~~~pei~~l~~~ 140 (192)
T PF06057_consen 70 VVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTAD--------FEIH-VSGWLGMGGDDAAYPVIPEIAKLPPA 140 (192)
T ss_pred EEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcce--------EEEE-hhhhcCCCCCcccCCchHHHHhCCCC
Confidence 999999999987777665 443 677888877753211 1000 011111111011123444555665 5
Q ss_pred CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 650 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 650 P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
|++.++|++|.-.. ...++.. +++.+..|| ||.|.. +.....+.+++-++
T Consensus 141 ~v~CiyG~~E~d~~-------cp~l~~~--~~~~i~lpG-gHHfd~--dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 141 PVQCIYGEDEDDSL-------CPSLRQP--GVEVIALPG-GHHFDG--DYDALAKRILDALK 190 (192)
T ss_pred eEEEEEcCCCCCCc-------CccccCC--CcEEEEcCC-CcCCCC--CHHHHHHHHHHHHh
Confidence 89999998886422 2223333 568888987 566753 45566666665544
No 206
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00014 Score=79.76 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=120.5
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc-CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL-NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~-~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
.....+.+|||||+.++-...+ ..|.++|+ +.+.. .+.+......+....|+|+|+.|+-.+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D---------~tiriwd~~~~~~~--~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D---- 267 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDD---------KTLRIWDLKDDGRN--LKTLKGHSTYVTSVAFSPDGNLLVSGSDD---- 267 (456)
T ss_pred ccceeeeEECCCCcEEEEecCC---------ceEEEeeccCCCeE--EEEecCCCCceEEEEecCCCCEEEEecCC----
Confidence 5567889999999976555442 47888888 44341 44555555677889999999766655522
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE---Eeccccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDA 345 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~~ 345 (732)
..+.++|+. +|+. ...+.+.. ..+....+++||+++..+.. . ..|.++|..++..+ .+...+
T Consensus 268 ----~tvriWd~~-~~~~--~~~l~~hs----~~is~~~f~~d~~~l~s~s~-d--~~i~vwd~~~~~~~~~~~~~~~~- 332 (456)
T KOG0266|consen 268 ----GTVRIWDVR-TGEC--VRKLKGHS----DGISGLAFSPDGNLLVSASY-D--GTIRVWDLETGSKLCLKLLSGAE- 332 (456)
T ss_pred ----CcEEEEecc-CCeE--EEeeeccC----CceEEEEECCCCCEEEEcCC-C--ccEEEEECCCCceeeeecccCCC-
Confidence 348888998 6766 56667665 66778899999995555543 3 45677788888843 222221
Q ss_pred ccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe----eEeCCEEEEEEeCC
Q 004735 346 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI----TLGNDCLFVEGASG 420 (732)
Q Consensus 346 ~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~----~~~~~~~~~~~~~~ 420 (732)
... +.. ...|.+ +++ ++++...++.-.+|.+ ..+. .+..+.....+..+ ...++.+++..+..
T Consensus 333 ~~~-~~~-----~~~fsp---~~~-~ll~~~~d~~~~~w~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 333 NSA-PVT-----SVQFSP---NGK-YLLSASLDRTLKLWDL--RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred CCC-cee-----EEEECC---CCc-EEEEecCCCeEEEEEc--cCCcceeeecccCCcceeEecccccCCCCeEEEEeCC
Confidence 111 222 234542 454 4445555666667654 4333 33333332222122 34455666555533
Q ss_pred CCCcEEEEEEcCCCc
Q 004735 421 VEPSSVAKVTLDDHK 435 (732)
Q Consensus 421 ~~~~~ly~~dl~~~~ 435 (732)
..++.+|+.++.
T Consensus 401 ---~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 401 ---GSVYVWDSSSGG 412 (456)
T ss_pred ---ceEEEEeCCccc
Confidence 357888887654
No 207
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.29 E-value=0.00021 Score=72.95 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=121.0
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..+.++|++-..++|++++..+ +..+..... .....-.....+|. +++++ ..+++++++.+.
T Consensus 35 ~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p----~~~~~~~~~d~~g~--Lv~~~----------~g~~~~~~~~~~ 96 (307)
T COG3386 35 DRGALLWVDILGGRIHRLDPET--GKKRVFPSP----GGFSSGALIDAGGR--LIACE----------HGVRLLDPDTGG 96 (307)
T ss_pred CCCEEEEEeCCCCeEEEecCCc--CceEEEECC----CCcccceeecCCCe--EEEEc----------cccEEEeccCCc
Confidence 3447899988889999999986 655555443 12223334555554 33333 456677766655
Q ss_pred cccc-EEcccCC-----CceeccccCCCCCeEEEEecc---C-CCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 233 IQEP-KVLVSGS-----DFYAFPRMDPRGERMAWIEWH---H-PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 233 ~~~~-~~lt~~~-----~~~~~p~~SPDG~~la~~~~~---~-~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
. +.++... ...+.-...|||+ ++|.... . ...+-....||.+|.. |.. .+++.+.- ..
T Consensus 97 ---~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~--~~l~~~~~----~~ 164 (307)
T COG3386 97 ---KITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPD--GGV--VRLLDDDL----TI 164 (307)
T ss_pred ---eeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCC--CCE--EEeecCcE----Ee
Confidence 4 4443221 1233457789987 7776655 1 1111133478998864 333 34444422 44
Q ss_pred CcCceeCCCCcEEEEEeccCCeeeEEEEeccC--Ce---EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~--g~---~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
...++|||||+.+|.++. ....|++++.+. +. .+.......+...|.... . |.+..+|.+..
T Consensus 165 ~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~------v-----DadG~lw~~a~ 231 (307)
T COG3386 165 PNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA------V-----DADGNLWVAAV 231 (307)
T ss_pred cCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE------E-----eCCCCEEEecc
Confidence 568999999995555554 345677776642 21 111111111223343321 1 33333443433
Q ss_pred CCEEEEEEEECCCCceEEeccCCCceEEe--eE-eCCEEEEEEeCC
Q 004735 378 NGRSYLGILDDFGHSLSLLDIPFTDIDNI--TL-GNDCLFVEGASG 420 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~~lt~~~~~v~~~--~~-~~~~~~~~~~~~ 420 (732)
.+...|-++++++.....+..+...+..+ -. +.+.+++.++..
T Consensus 232 ~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 232 WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 44457788899977777777775544444 22 234444444444
No 208
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.28 E-value=1.9e-05 Score=78.33 Aligned_cols=130 Identities=10% Similarity=-0.005 Sum_probs=83.8
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+++...+..+|+++.........+.|.. ..-.++..|||||++|+-.+-+ ..+-+++-.+|+ -
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgH----q~lVn~V~fSPd~r~IASaSFD---------kSVkLW~g~tGk---~ 401 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGH----QALVNHVSFSPDGRYIASASFD---------KSVKLWDGRTGK---F 401 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhch----hhheeeEEECCCccEEEEeecc---------cceeeeeCCCcc---h
Confidence 34565566789999875310223455654 4556888999999987654432 356666777776 2
Q ss_pred EEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 237 KVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 237 ~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
..... .-+.+++.+||.|.+.|+-.+ ..+.|-++++. +.++ ...+++.+ ..+..+.|||||+.+
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~S--------kDsTLKvw~V~-tkKl--~~DLpGh~----DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGS--------KDSTLKVWDVR-TKKL--KQDLPGHA----DEVFAVDWSPDGQRV 466 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcC--------CCceEEEEEee-eeee--cccCCCCC----ceEEEEEecCCCcee
Confidence 22222 234567889999988654333 34568899988 5544 34466654 457788999999855
Q ss_pred EE
Q 004735 316 FV 317 (732)
Q Consensus 316 ~~ 317 (732)
..
T Consensus 467 ~s 468 (480)
T KOG0271|consen 467 AS 468 (480)
T ss_pred ec
Confidence 43
No 209
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.27 E-value=0.00034 Score=69.82 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=123.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC--CceeccccCCCCCeEEEEeccCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
|.-+++.+|+...++++..+.+ .-++++|..+++. ...+...+ -|+..-.|||||++|+-+..+...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG-------~~~~v~D~~~g~~--~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~-- 74 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG-------TFALVFDCRTGQL--LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET-- 74 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC-------cEEEEEEcCCCce--eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC--
Confidence 4456778995555555544332 5788999999872 33444333 477788999999988766644433
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc------CC---------eeeEEEEeccC
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK------NG---------FWNLHKWIESN 334 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~------~g---------~~~l~~~d~~~ 334 (732)
....|-|+|.. ..++++..++... ..+.++.|.|||+.+++++-. .| ..+|..+|..+
T Consensus 75 -g~G~IgVyd~~--~~~~ri~E~~s~G----IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 75 -GRGVIGVYDAA--RGYRRIGEFPSHG----IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred -CcEEEEEEECc--CCcEEEeEecCCC----cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 56779999987 3344455555554 678899999999833344320 12 13466777777
Q ss_pred CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE-----EEEEEEECCCCceEEeccCC-------Cc
Q 004735 335 NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR-----SYLGILDDFGHSLSLLDIPF-------TD 402 (732)
Q Consensus 335 g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~-----~~ly~~~~~~~~~~~lt~~~-------~~ 402 (732)
|++..-.....+.. ..+.+.+.+. .++.+++.....|. .-|++.+. ++..+.+..+. ..
T Consensus 148 G~ll~q~~Lp~~~~----~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y 218 (305)
T PF07433_consen 148 GALLEQVELPPDLH----QLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGY 218 (305)
T ss_pred CceeeeeecCcccc----ccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCc
Confidence 76432211100000 1223444553 45556665554432 33555543 33355555432 33
Q ss_pred eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 403 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
+.++ ...++.++.+++-.. ..+.++|.++++.
T Consensus 219 ~gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRG--GRVAVWDAATGRL 251 (305)
T ss_pred eEEEEEeCCCCEEEEECCCC--CEEEEEECCCCCE
Confidence 5555 344555555554333 2355668888875
No 210
>PTZ00420 coronin; Provisional
Probab=98.27 E-value=0.00015 Score=80.20 Aligned_cols=206 Identities=10% Similarity=0.013 Sum_probs=115.4
Q ss_pred CceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCC-ce-------ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCC
Q 004735 147 GGAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSS-PL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDA 216 (732)
Q Consensus 147 ~~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~-~~-------~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~ 216 (732)
+.++.+++ +.++++...++.|.++++.++ +. .. .+... ........|+|++..++++...+
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~-~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D---- 147 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHN-DESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD---- 147 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-CccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC----
Confidence 34445553 467777778888999998752 21 11 12211 33457788999999876654432
Q ss_pred CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC
Q 004735 217 LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 296 (732)
Q Consensus 217 ~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~ 296 (732)
..|.++|+.+++. ...+. ....+....|+|||+.|+... ....|.++|+. +++. +..+.+..
T Consensus 148 ----gtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s--------~D~~IrIwD~R-sg~~--i~tl~gH~ 209 (568)
T PTZ00420 148 ----SFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTC--------VGKHMHIIDPR-KQEI--ASSFHIHD 209 (568)
T ss_pred ----CeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEe--------cCCEEEEEECC-CCcE--EEEEeccc
Confidence 5788889987761 22232 334566789999999887554 23458999998 6765 33344432
Q ss_pred CCccccC-cCc----eeCCCCcEEEEEe-ccCCeeeEEEEeccC-CeEEEecccccccC--CCceeecccceeeeeecCC
Q 004735 297 PTIVESP-TEP----KWSSKGELFFVTD-RKNGFWNLHKWIESN-NEVLAIYSLDAEFS--RPLWVFGINSYEIIQSHGE 367 (732)
Q Consensus 297 ~~~~~~~-~~~----~wspDg~l~~~~~-~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~--~~~w~~~~~~~~~~~~~~~ 367 (732)
+.. ... .|++|++.++++. .+....+|.++|+.+ ++.......+.... .|.|.+ +
T Consensus 210 ----g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~------------~ 273 (568)
T PTZ00420 210 ----GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE------------S 273 (568)
T ss_pred ----CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC------------C
Confidence 211 122 2458887444433 312234677888774 33222222211111 123332 5
Q ss_pred CCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 368 KNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 368 ~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
.+.+|++...++.-++|-+ ..+....|.
T Consensus 274 tg~l~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred CCCEEEEEECCCeEEEEEc--cCCcEEeec
Confidence 5666666666666666654 445555554
No 211
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.27 E-value=0.00019 Score=71.85 Aligned_cols=188 Identities=13% Similarity=0.059 Sum_probs=101.2
Q ss_pred CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCC
Q 004735 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
+..+++....+........+++|+||+.++++..... ...||+...++. ...+..+. ....|.|+|||.
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~------~~~L~~~~~~~~----~~~~~~g~-~l~~PS~d~~g~ 78 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDG------GRSLYVGPAGGP----VRPVLTGG-SLTRPSWDPDGW 78 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEEcCC------CCEEEEEcCCCc----ceeeccCC-ccccccccCCCC
Confidence 3445555432211235678899999999999982221 378999887654 34443333 456799999976
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEec--c
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--S 333 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~--~ 333 (732)
+........ ...+.. +.. +|+.....+-.... . ..+..+.+||||. ++++... .+..+|++..+ +
T Consensus 79 -~W~v~~~~~-----~~~~~~-~~~-~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~-~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 79 -VWTVDDGSG-----GVRVVR-DSA-SGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVED-GGGGRVYVAGVVRD 146 (253)
T ss_pred -EEEEEcCCC-----ceEEEE-ecC-CCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEec-CCCCeEEEEEEEeC
Confidence 433432221 222222 322 34433233222211 0 2577899999999 8887765 44466664432 2
Q ss_pred -CCeEEEec-------ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 334 -NNEVLAIY-------SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 334 -~g~~~~l~-------~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
.|..+.+. ..........|. ++..|++.....+......+..+++..+.++...
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~-------------~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~ 208 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWS-------------DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVN 208 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeec-------------CCCEEEEEeCCCCCceeEEEEccCCcccccCCCC
Confidence 23222222 112233345565 4455555554444332225677788877775443
No 212
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.26 E-value=3.5e-05 Score=77.66 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHH---CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHH----HHHHHHHh
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTS---RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC----SCATFLVG 567 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~---~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~----~~i~~l~~ 567 (732)
++++|++.|.|+-. ..|......|.+ ..+.|+++.+.|........... .+......+|.+ +.++.+..
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHHHHHhh
Confidence 47899999987654 233344444543 47999999998765433220000 111112233333 33444444
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEeecCcC
Q 004735 568 SGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVA 608 (732)
Q Consensus 568 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~p---~~~~a~v~~~~~~ 608 (732)
+......++.++|||.|+|+++.++. .+ ..++.++++.|..
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114579999999999999999998 66 6888888888753
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.24 E-value=9.8e-05 Score=78.07 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=101.7
Q ss_pred EEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC
Q 004735 205 YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG 284 (732)
Q Consensus 205 l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g 284 (732)
|+++.+.. .+.|.++|.++.+. ...+..+...+....+||||++++..+ + ...|.++|+. ++
T Consensus 7 l~~V~~~~-------~~~v~viD~~t~~~--~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r-------dg~vsviD~~-~~ 68 (369)
T PF02239_consen 7 LFYVVERG-------SGSVAVIDGATNKV--VARIPTGGAPHAGLKFSPDGRYLYVAN-R-------DGTVSVIDLA-TG 68 (369)
T ss_dssp EEEEEEGG-------GTEEEEEETTT-SE--EEEEE-STTEEEEEE-TT-SSEEEEEE-T-------TSEEEEEETT-SS
T ss_pred EEEEEecC-------CCEEEEEECCCCeE--EEEEcCCCCceeEEEecCCCCEEEEEc-C-------CCeEEEEECC-cc
Confidence 46665544 26899999998762 345544445566788999999876554 2 2359999998 67
Q ss_pred ceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeee
Q 004735 285 DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
+. +..+.-. .....+++|+||+.+++++...+ .+..+|.++.+... |.........+. .-...+..++
T Consensus 69 ~~--v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~~~--~v~v~D~~tle~v~~I~~~~~~~~~~~--~Rv~aIv~s~ 137 (369)
T PF02239_consen 69 KV--VATIKVG-----GNPRGIAVSPDGKYVYVANYEPG--TVSVIDAETLEPVKTIPTGGMPVDGPE--SRVAAIVASP 137 (369)
T ss_dssp SE--EEEEE-S-----SEEEEEEE--TTTEEEEEEEETT--EEEEEETTT--EEEEEE--EE-TTTS-----EEEEEE-S
T ss_pred cE--EEEEecC-----CCcceEEEcCCCCEEEEEecCCC--ceeEeccccccceeecccccccccccC--CCceeEEecC
Confidence 65 3333322 33567899999995566654233 57778988866543 322211110000 0000111121
Q ss_pred ecCCCCEEEEEEEECCEEEEEEEECCCCce---EEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 364 SHGEKNLIACSYRQNGRSYLGILDDFGHSL---SLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 364 ~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~---~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
....+++...+. .+|+++|....+. +.+..+..-......+++++++.+.... ..+-++|+++++.
T Consensus 138 ---~~~~fVv~lkd~--~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s--n~i~viD~~~~k~ 206 (369)
T PF02239_consen 138 ---GRPEFVVNLKDT--GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS--NKIAVIDTKTGKL 206 (369)
T ss_dssp ---SSSEEEEEETTT--TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG--TEEEEEETTTTEE
T ss_pred ---CCCEEEEEEccC--CeEEEEEeccccccceeeecccccccccccCcccceeeeccccc--ceeEEEeeccceE
Confidence 344455554433 3678888765432 2333332222233556666666655443 3788889887764
No 214
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.16 E-value=3.3e-05 Score=77.44 Aligned_cols=201 Identities=12% Similarity=0.044 Sum_probs=116.7
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
....-..||++|++++-.+.+. ..-||.+..++. ..-...|......+....||||.++|+-...++
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~-------Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e----- 291 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDS-------TAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE----- 291 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCc-------eEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchH-----
Confidence 4456678999999987665543 356666666543 111234444555667789999999997655332
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCC
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 349 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 349 (732)
.+++.|++ +|.. +...+..- + .++...+|-|||. ++.-+.+ ..++.+|.++.....-- + +..
T Consensus 292 ---~~~lwDv~-tgd~--~~~y~~~~-~--~S~~sc~W~pDg~~~V~Gs~d----r~i~~wdlDgn~~~~W~-g---vr~ 354 (519)
T KOG0293|consen 292 ---VLSLWDVD-TGDL--RHLYPSGL-G--FSVSSCAWCPDGFRFVTGSPD----RTIIMWDLDGNILGNWE-G---VRD 354 (519)
T ss_pred ---heeeccCC-cchh--hhhcccCc-C--CCcceeEEccCCceeEecCCC----CcEEEecCCcchhhccc-c---ccc
Confidence 27888888 7765 33333331 1 5778899999997 5433322 45788888765422111 0 011
Q ss_pred CceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 350 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
| -..++...+ ||+.++... .+ .+|..++..+...+-+-.....+..+ .+.+++++++.-. +.++.+
T Consensus 355 ~----~v~dlait~---Dgk~vl~v~-~d--~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~L 421 (519)
T KOG0293|consen 355 P----KVHDLAITY---DGKYVLLVT-VD--KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHL 421 (519)
T ss_pred c----eeEEEEEcC---CCcEEEEEe-cc--cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEE
Confidence 1 122334443 677666554 33 44555566665555344445556666 3455555554432 356888
Q ss_pred EEcCCC
Q 004735 429 VTLDDH 434 (732)
Q Consensus 429 ~dl~~~ 434 (732)
+|++..
T Consensus 422 WDl~e~ 427 (519)
T KOG0293|consen 422 WDLEEN 427 (519)
T ss_pred eecchh
Confidence 888743
No 215
>PTZ00421 coronin; Provisional
Probab=98.16 E-value=0.00024 Score=77.89 Aligned_cols=158 Identities=10% Similarity=0.090 Sum_probs=94.5
Q ss_pred ceeEEEC--CEEEEEeCCCCeEEEEeCCCCCCC-------ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCC
Q 004735 148 GAFRIFG--DTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (732)
Q Consensus 148 ~~~~~~~--~~i~f~~~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~ 218 (732)
.++.+++ +.++++...++.|.++++.++ +. ...|... ........|+|++..++++...+
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~-~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~~iLaSgs~D------ 147 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEE-GLTQNISDPIVHLQGH----TKKVGIVSFHPSAMNVLASAGAD------ 147 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCC-ccccccCcceEEecCC----CCcEEEEEeCcCCCCEEEEEeCC------
Confidence 3445543 456677777888999998752 21 1122222 34456788999875445544322
Q ss_pred ceeEEEEEEcCCCCccccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 219 STTEIVAIALNGQNIQEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
..|.++|+.+++ .. .+......+....|+|||+.|+..+ ....|.++|+. +|+. +..+.+..
T Consensus 148 --gtVrIWDl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs--------~Dg~IrIwD~r-sg~~--v~tl~~H~- 210 (493)
T PTZ00421 148 --MVVNVWDVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTS--------KDKKLNIIDPR-DGTI--VSSVEAHA- 210 (493)
T ss_pred --CEEEEEECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEec--------CCCEEEEEECC-CCcE--EEEEecCC-
Confidence 578889998876 33 3433445677789999999887655 23458999998 6654 33333332
Q ss_pred CccccCcCceeCCCCcEEEEEe-ccCCeeeEEEEeccCC
Q 004735 298 TIVESPTEPKWSSKGELFFVTD-RKNGFWNLHKWIESNN 335 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~-~~~g~~~l~~~d~~~g 335 (732)
. .......|.+++..+++.. .......|.++|+.+.
T Consensus 211 ~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 211 S--AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred C--CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 0 2234678999877443332 2122345777777653
No 216
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.16 E-value=0.00026 Score=70.88 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=93.2
Q ss_pred eEEECCEEEEEe--CCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~--~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+.+++.++|+. .....||+.... +..+.+... ..+..|+|+++|..+++..... ...+++ +
T Consensus 31 vS~dg~~~A~v~~~~~~~~L~~~~~~---~~~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~-------~~~~~~-~ 94 (253)
T PF10647_consen 31 VSPDGSRVAAVSEGDGGRSLYVGPAG---GPVRPVLTG-----GSLTRPSWDPDGWVWTVDDGSG-------GVRVVR-D 94 (253)
T ss_pred ECCCCCeEEEEEEcCCCCEEEEEcCC---CcceeeccC-----CccccccccCCCCEEEEEcCCC-------ceEEEE-e
Confidence 344566788887 555689999876 444444322 3567899999977544333211 122222 3
Q ss_pred cCCCCccccEEcccC-CC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCcee---e-eEEecCCCCCc
Q 004735 228 LNGQNIQEPKVLVSG-SD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVY---K-RVCVAGFDPTI 299 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~-~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~~~---~-~~~~~~~~~~~ 299 (732)
..+++.. ...+.-. .. .+...++||||.++|++..+. ...+|++.-+.. +|... . ..+.....
T Consensus 95 ~~~g~~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~-----~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~--- 165 (253)
T PF10647_consen 95 SASGTGE-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG-----GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL--- 165 (253)
T ss_pred cCCCcce-eEEecccccCCceEEEEECCCCcEEEEEEecC-----CCCeEEEEEEEeCCCCCcceeccceEeccccc---
Confidence 3333300 2223211 11 567789999999999998544 346688887652 23111 1 12222222
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
..+..+.|.+|++|++.... .+......+..+++..+.+.
T Consensus 166 -~~v~~v~W~~~~~L~V~~~~-~~~~~~~~v~~dG~~~~~l~ 205 (253)
T PF10647_consen 166 -SDVTDVAWSDDSTLVVLGRS-AGGPVVRLVSVDGGPSTPLP 205 (253)
T ss_pred -CcceeeeecCCCEEEEEeCC-CCCceeEEEEccCCcccccC
Confidence 34568999999996666655 33221224667777666663
No 217
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.15 E-value=0.00011 Score=68.09 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCCCc-cCCcccHHHHHHHHCCCEEEEEcCCCCC-CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 495 PPLLVKSHGGPTSE-ARGILNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 495 ~P~vl~~HGg~~~~-~~~~~~~~~~~l~~~G~~v~~~d~rG~~-g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
.-.|||+-|.+.+- .......+..++.+.+|..+.+..+.+. |+|..... .+.+|+..+++++...+.
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk--------~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLK--------DDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccccc--------ccHHHHHHHHHHhhccCc--
Confidence 35677776643332 2233445778889999999999987653 35544222 458999999998876643
Q ss_pred CCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcCCHHH
Q 004735 573 EKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLSM 612 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~d~~~ 612 (732)
..+|+++|||.|+.-.+.+++ .+..+.++|+.+|++|..+
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrEY 148 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDREY 148 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhhh
Confidence 458999999999999998885 6788999999999998763
No 218
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.15 E-value=0.0047 Score=61.62 Aligned_cols=241 Identities=12% Similarity=0.040 Sum_probs=129.1
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++.+...++.|.++..+++ +....+... ....--..|+|.+..+++-..+ ..+|.+.+..+.
T Consensus 119 tlLATGdmsG~v~v~~~stg-~~~~~~~~e----~~dieWl~WHp~a~illAG~~D---------GsvWmw~ip~~~--- 181 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTG-GEQWKLDQE----VEDIEWLKWHPRAHILLAGSTD---------GSVWMWQIPSQA--- 181 (399)
T ss_pred eEEEecCCCccEEEEEcccC-ceEEEeecc----cCceEEEEecccccEEEeecCC---------CcEEEEECCCcc---
Confidence 45556666788888888873 333444322 1122335699988876555442 588999888755
Q ss_pred cEEcccCCC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 236 PKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 236 ~~~lt~~~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
..++..|.. ....=+|.||||+|+-.. ....|.++++. +|.. +..+...+ . ........+.+|.+
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy--------~dgti~~Wn~k-tg~p--~~~~~~~e-~--~~~~~~~~~~~~~~ 247 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGY--------DDGTIIVWNPK-TGQP--LHKITQAE-G--LELPCISLNLAGST 247 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEe--------cCceEEEEecC-CCce--eEEecccc-c--CcCCccccccccce
Confidence 556655543 233447999999997654 24458899998 7754 33333222 1 23344555666666
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
++..+. .+ ..+.++..+|+.............+.-......+.+++.. ..=.|.....-+|.-.|| |++...+|
T Consensus 248 ~~~g~~-e~--~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i~iy--D~a~~~~R 321 (399)
T KOG0296|consen 248 LTKGNS-EG--VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTIAIY--DLAASTLR 321 (399)
T ss_pred eEeccC-Cc--cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceEEEE--ecccchhh
Confidence 655554 33 2444555566655444220000000000001111111100 111233333445555555 77777777
Q ss_pred EeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 395 LLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 395 ~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+-.....|..+.-.+...++.+... ..++.+|..+|..
T Consensus 322 ~~c~he~~V~~l~w~~t~~l~t~c~~---g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 322 HICEHEDGVTKLKWLNTDYLLTACAN---GKVRQWDARTGQL 360 (399)
T ss_pred eeccCCCceEEEEEcCcchheeeccC---ceEEeeeccccce
Confidence 76666666777732233444444322 3688888888874
No 219
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=0.0015 Score=65.24 Aligned_cols=216 Identities=14% Similarity=0.038 Sum_probs=121.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++|.+....-++++|..++ .....+...++ .-.++...|||||++| |+.+++-... ...|-+.|... .
T Consensus 19 avafaRRPG~~~~v~D~~~g-~~~~~~~a~~g--RHFyGHg~fs~dG~~L-ytTEnd~~~g---~G~IgVyd~~~-~--- 87 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTG-QLLQRLWAPPG--RHFYGHGVFSPDGRLL-YTTENDYETG---RGVIGVYDAAR-G--- 87 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCC-ceeeEEcCCCC--CEEecCEEEcCCCCEE-EEeccccCCC---cEEEEEEECcC-C---
Confidence 56666655557899999883 33445554421 2445778999999985 5555443221 47888899883 2
Q ss_pred cEEcccCCCceec---cccCCCCCeEEEEec---cCCC-----C--CCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 236 PKVLVSGSDFYAF---PRMDPRGERMAWIEW---HHPN-----M--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 236 ~~~lt~~~~~~~~---p~~SPDG~~la~~~~---~~~~-----~--~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
.+++.+-+.+-.+ ..|.|||+.|+.... .++. + +--...|-.+|.. +|++.....++..... .+
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~--lS 164 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQ--LS 164 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccc--cc
Confidence 4445332222222 478999999976531 1111 0 0012346777777 8987555445433212 67
Q ss_pred CcCceeCCCCcEEEEEeccCCee-----eEEEEeccCCeEEEecccccccCCCcee---ecccceeeeeecCCCCEEEEE
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFW-----NLHKWIESNNEVLAIYSLDAEFSRPLWV---FGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~-----~l~~~d~~~g~~~~l~~~~~~~~~~~w~---~~~~~~~~~~~~~~~~~l~~~ 374 (732)
+..++|++||.++|-.+. +|.. -|.+.+. ++..+.+. .. ...|. .-.-++.+.. +++.++++
T Consensus 165 iRHLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~~-g~~~~~~~-~p----~~~~~~l~~Y~gSIa~~~---~g~~ia~t 234 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQY-QGDPGDAPPLVALHRR-GGALRLLP-AP----EEQWRRLNGYIGSIAADR---DGRLIAVT 234 (305)
T ss_pred eeeEEecCCCcEEEEEec-CCCCCccCCeEEEEcC-CCcceecc-CC----hHHHHhhCCceEEEEEeC---CCCEEEEE
Confidence 888999999986666655 4431 1333332 22233322 11 11121 1112334442 66678888
Q ss_pred EEECCEEEEEEEECCCCceEEec
Q 004735 375 YRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 375 s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
+-+.+...+| |.+++++....
T Consensus 235 sPrGg~~~~~--d~~tg~~~~~~ 255 (305)
T PF07433_consen 235 SPRGGRVAVW--DAATGRLLGSV 255 (305)
T ss_pred CCCCCEEEEE--ECCCCCEeecc
Confidence 8777766666 77788765443
No 220
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.12 E-value=0.0014 Score=78.82 Aligned_cols=254 Identities=12% Similarity=0.109 Sum_probs=134.0
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCC-CC-CC-----CCeE---eeceeecCCCCEEEEEEeccCCCCC
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DY-GE-----PLVS---YADGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~-~~-~~-----~~~~---~~~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
..+...++.|++++...++|.++|+++ .....+.. +. +. .... -...+++++|+. +|+.+..
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~----- 644 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTE----- 644 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCC-----
Confidence 333334568888888888999999875 33333322 10 00 0011 245678898886 4555432
Q ss_pred CceeEEEEEEcCCCCccccEEcccC-C-------------Ccee---ccccCCCCCeEEEEeccCCCCCCCccEEEEEEe
Q 004735 218 NSTTEIVAIALNGQNIQEPKVLVSG-S-------------DFYA---FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 280 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~lt~~-~-------------~~~~---~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~ 280 (732)
++.|.++|+.++. ++.+... . .... ..+++|++..|+... . ...+|+++|.
T Consensus 645 --n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad-~------~~~~I~v~d~ 712 (1057)
T PLN02919 645 --NHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM-A------GQHQIWEYNI 712 (1057)
T ss_pred --CceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE-C------CCCeEEEEEC
Confidence 2678889988776 5555321 0 0012 347899777775543 2 2455899988
Q ss_pred cCCCceeeeEEecCCC---------C--CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc----
Q 004735 281 SENGDVYKRVCVAGFD---------P--TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---- 345 (732)
Q Consensus 281 ~~~g~~~~~~~~~~~~---------~--~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---- 345 (732)
. +|... .+.+.. . .-...+..++++|||+.+|+++. +..+|.++|++++..+.+.....
T Consensus 713 ~-~g~v~---~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 713 S-DGVTR---VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred C-CCeEE---EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCc
Confidence 7 55442 111110 0 00023445789999984445554 45679999998876554432110
Q ss_pred ---ccC---CC---ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC-C-------------Cc
Q 004735 346 ---EFS---RP---LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP-F-------------TD 402 (732)
Q Consensus 346 ---~~~---~~---~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~-~-------------~~ 402 (732)
.+. .+ ........+.+.+ +| .+|++.. +...|.+++.+++.+..+... . ..
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd~---dG-~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCAK---DG-QIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEeC---CC-cEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 000 00 0001122334432 33 4555543 335577778888776654321 0 12
Q ss_pred eEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 403 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 403 v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...+ ..+++++ |++.. ....|.++|+++++.
T Consensus 861 P~GIavd~dG~l-yVaDt--~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRL-FVADT--NNSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCE-EEEEC--CCCEEEEEECCCCcc
Confidence 2333 3445554 44432 234688888888764
No 221
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.12 E-value=6.6e-05 Score=75.67 Aligned_cols=225 Identities=10% Similarity=0.047 Sum_probs=129.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCC--CCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spd--G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.++.+..-.|.+-++.... ....+.-.+ +..+.....|+|. +..++-...+. .-.|| ++++..
T Consensus 188 ~~laT~swsG~~kvW~~~~--~~~~~~l~g---H~~~v~~~~fhP~~~~~~lat~s~Dg-------tvklw--~~~~e~- 252 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQ--CNLLQTLRG---HTSRVGAAVFHPVDSDLNLATASADG-------TVKLW--KLSQET- 252 (459)
T ss_pred CeEEEeecCCceeEeecCC--cceeEEEec---cccceeeEEEccCCCccceeeeccCC-------ceeee--ccCCCc-
Confidence 4444544556566666655 432222222 2456788889997 44433333322 23444 444432
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
....|+.....+...+|.|+|++|+-.+.|.. | .++|+. ++.. +....+.. ..+...+|-+||.
T Consensus 253 -~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t---W-----RlWD~~-tk~E--lL~QEGHs----~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 253 -PLQDLEGHLARVSRVAFHPSGKFLGTASFDST---W-----RLWDLE-TKSE--LLLQEGHS----KGVFSIAFQPDGS 316 (459)
T ss_pred -chhhhhcchhhheeeeecCCCceeeecccccc---h-----hhcccc-cchh--hHhhcccc----cccceeEecCCCc
Confidence 14556655566778899999999988776653 2 344776 4432 44445555 7889999999999
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
|+.+..- ....+| +|+.+|....+..+ -.++-+..|+ .+++.+.+...++.-.||.+.... .
T Consensus 317 L~~tGGl-D~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fs-------------PNGy~lATgs~Dnt~kVWDLR~r~-~ 379 (459)
T KOG0272|consen 317 LAATGGL-DSLGRV--WDLRTGRCIMFLAGHIKEILSVAFS-------------PNGYHLATGSSDNTCKVWDLRMRS-E 379 (459)
T ss_pred eeeccCc-cchhhe--eecccCcEEEEecccccceeeEeEC-------------CCceEEeecCCCCcEEEeeecccc-c
Confidence 7765433 333344 47777765544432 2222333444 455666677778888888665322 2
Q ss_pred eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 393 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 393 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
+-.+.....-|+.+ ..++.+.++.+++.++...||.
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence 44444445556776 3333444455556665566665
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.11 E-value=0.0001 Score=77.98 Aligned_cols=195 Identities=10% Similarity=-0.034 Sum_probs=99.7
Q ss_pred EEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++....+++|.++|.++ .+ ...+..+ ........++|||++ +|+..+. ..|.++|+.+++.
T Consensus 8 ~~V~~~~~~~v~viD~~t--~~~~~~i~~~----~~~h~~~~~s~Dgr~-~yv~~rd--------g~vsviD~~~~~~-- 70 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT--NKVVARIPTG----GAPHAGLKFSPDGRY-LYVANRD--------GTVSVIDLATGKV-- 70 (369)
T ss_dssp EEEEEGGGTEEEEEETTT---SEEEEEE-S----TTEEEEEE-TT-SSE-EEEEETT--------SEEEEEETTSSSE--
T ss_pred EEEEecCCCEEEEEECCC--CeEEEEEcCC----CCceeEEEecCCCCE-EEEEcCC--------CeEEEEECCcccE--
Confidence 344555678999999886 43 3444433 112455679999998 5555432 5799999998872
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC---ccccCcCceeCCCC
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT---IVESPTEPKWSSKG 312 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~---~~~~~~~~~wspDg 312 (732)
+.++..+.. ..+.++||||++|+..... ...+.++|.+ +.+. +..++..... ....+..+.-+++.
T Consensus 71 v~~i~~G~~-~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~-tle~--v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 71 VATIKVGGN-PRGIAVSPDGKYVYVANYE-------PGTVSVIDAE-TLEP--VKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp EEEEE-SSE-EEEEEE--TTTEEEEEEEE-------TTEEEEEETT-T--E--EEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred EEEEecCCC-cceEEEcCCCCEEEEEecC-------CCceeEeccc-cccc--eeecccccccccccCCCceeEEecCCC
Confidence 445544443 3557899999988655422 2358899977 5554 3333221100 00112234456665
Q ss_pred cEEEEEeccCCeeeEEEEeccCCeEE---EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
..++.+.. +..+++.+|....+.. .+..+.. . ++..|.+ ++++++.....+ ..|.++|.+
T Consensus 140 ~~fVv~lk--d~~~I~vVdy~d~~~~~~~~i~~g~~-~---------~D~~~dp---dgry~~va~~~s--n~i~viD~~ 202 (369)
T PF02239_consen 140 PEFVVNLK--DTGEIWVVDYSDPKNLKVTTIKVGRF-P---------HDGGFDP---DGRYFLVAANGS--NKIAVIDTK 202 (369)
T ss_dssp SEEEEEET--TTTEEEEEETTTSSCEEEEEEE--TT-E---------EEEEE-T---TSSEEEEEEGGG--TEEEEEETT
T ss_pred CEEEEEEc--cCCeEEEEEeccccccceeeeccccc-c---------cccccCc---ccceeeeccccc--ceeEEEeec
Confidence 53333333 2336888886654322 2211110 0 1222322 666666654433 377788888
Q ss_pred CCceEEe
Q 004735 390 GHSLSLL 396 (732)
Q Consensus 390 ~~~~~~l 396 (732)
+++...+
T Consensus 203 ~~k~v~~ 209 (369)
T PF02239_consen 203 TGKLVAL 209 (369)
T ss_dssp TTEEEEE
T ss_pred cceEEEE
Confidence 8766543
No 223
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.10 E-value=4.6e-05 Score=75.31 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=110.3
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHH-HCCCE----EEEEcCCCCCCCChhhH--------HhhccCCCc-----ccHHH
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWT-SRGWA----FVDVNYGGSTGYGREFR--------ERLLGRWGI-----VDVND 557 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~-~~G~~----v~~~d~rG~~g~g~~~~--------~~~~~~~~~-----~~~~D 557 (732)
-..||+||. +.....+..+++.+. +.|.+ ++.++..|.-.....+. .-... ... ....-
T Consensus 12 tPTifihG~--~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~-~n~~~~~~~qa~w 88 (255)
T PF06028_consen 12 TPTIFIHGY--GGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFE-DNRNANYKKQAKW 88 (255)
T ss_dssp EEEEEE--T--TGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEES-STT-CHHHHHHHH
T ss_pred CcEEEECCC--CCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEec-CCCcCCHHHHHHH
Confidence 456789997 455677888899887 66653 44444444211111110 00011 111 12444
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CC-----CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCC
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (732)
+..++.+|.+++.+ +++-++||||||..++.++. +. ..+...|.+++.++-..............-..+-..
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~gp~~~ 166 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKNGPKSM 166 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT-BSS-
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcccCCccc
Confidence 66788888888765 59999999999999998876 21 146777777766553211100000000000000000
Q ss_pred hhhhhhcCcc--ccCCCCCCCEEEEEeC------CCCccChHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCcccHHH
Q 004735 632 EKDYYEKSPI--NFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKF 701 (732)
Q Consensus 632 ~~~~~~~sp~--~~~~~i~~P~Lii~G~------~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~ 701 (732)
.+.|...-.. ..+ .-.+.+|-|.|. .|.+||...++.+...++......+-+++.| +.|.-.. ++ .+
T Consensus 167 ~~~y~~l~~~~~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~Lh-eN-~~ 243 (255)
T PF06028_consen 167 TPMYQDLLKNRRKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQLH-EN-PQ 243 (255)
T ss_dssp -HHHHHHHHTHGGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGGG-CC-HH
T ss_pred CHHHHHHHHHHHhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccCC-CC-HH
Confidence 1122211111 111 113679999998 8899999999999888887767777777765 5786432 33 35
Q ss_pred HHHHHHHHH
Q 004735 702 TLEQQMVFF 710 (732)
Q Consensus 702 ~~~~~~~fl 710 (732)
+.+.+.+||
T Consensus 244 V~~~I~~FL 252 (255)
T PF06028_consen 244 VDKLIIQFL 252 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 556666665
No 224
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.10 E-value=0.00013 Score=69.69 Aligned_cols=151 Identities=12% Similarity=0.079 Sum_probs=97.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++..+++...++.+.++|+.+ ++.++.-.+ +.......++|||.++|+--+. + ..|-+++.-++-
T Consensus 74 dg~~alS~swD~~lrlWDl~~--g~~t~~f~G---H~~dVlsva~s~dn~qivSGSr-D--------kTiklwnt~g~c- 138 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLAT--GESTRRFVG---HTKDVLSVAFSTDNRQIVSGSR-D--------KTIKLWNTLGVC- 138 (315)
T ss_pred CCceEEeccccceEEEEEecC--CcEEEEEEe---cCCceEEEEecCCCceeecCCC-c--------ceeeeeeecccE-
Confidence 346677777788999999998 665544433 2455677889999999644332 2 467777777654
Q ss_pred cccEEcccC--CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 234 QEPKVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 234 ~~~~~lt~~--~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
.-.+.++ .+.+...+|||...-...++... ...+-+.|++ +-++ ...+.+.. +++..+..|||
T Consensus 139 --k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~------DktvKvWnl~-~~~l--~~~~~gh~----~~v~t~~vSpD 203 (315)
T KOG0279|consen 139 --KYTIHEDSHREWVSCVRFSPNESNPIIVSASW------DKTVKVWNLR-NCQL--RTTFIGHS----GYVNTVTVSPD 203 (315)
T ss_pred --EEEEecCCCcCcEEEEEEcCCCCCcEEEEccC------CceEEEEccC-Ccch--hhcccccc----ccEEEEEECCC
Confidence 3333333 57788899999854444444222 2337788887 4444 44455665 88899999999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeE
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
|.+...... .| .++++|++.++.
T Consensus 204 GslcasGgk-dg--~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 204 GSLCASGGK-DG--EAMLWDLNEGKN 226 (315)
T ss_pred CCEEecCCC-Cc--eEEEEEccCCce
Confidence 985444333 44 455667766554
No 225
>PTZ00420 coronin; Provisional
Probab=98.10 E-value=0.0028 Score=70.23 Aligned_cols=214 Identities=13% Similarity=0.047 Sum_probs=110.8
Q ss_pred eEeeceeecCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCCc------cccEEcccCCCceeccccCCCCCeEEEEec
Q 004735 191 VSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNI------QEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 191 ~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~~~~lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
....+.+|+|+ ++.|+.... + ..|.++|+.++.. .....+......+....|+|++..++....
T Consensus 75 ~~V~~lafsP~~~~lLASgS~-D--------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSE-D--------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeC-C--------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 45677889997 565444433 2 4677778764320 001123333445677899999987754432
Q ss_pred cCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecc
Q 004735 264 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYS 342 (732)
Q Consensus 264 ~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~ 342 (732)
. ...|.++|+. +++. ...+... ..+..+.|+|||+++..+.. .+ .|.++|+.+++... +..
T Consensus 146 ~-------DgtIrIWDl~-tg~~--~~~i~~~-----~~V~SlswspdG~lLat~s~-D~--~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 146 F-------DSFVNIWDIE-NEKR--AFQINMP-----KKLSSLKWNIKGNLLSGTCV-GK--HMHIIDPRKQEIASSFHI 207 (568)
T ss_pred C-------CCeEEEEECC-CCcE--EEEEecC-----CcEEEEEECCCCCEEEEEec-CC--EEEEEECCCCcEEEEEec
Confidence 2 2348899998 6653 2223222 44678899999995544443 33 46777888876432 221
Q ss_pred cccccC-CCceeecccceeeeeecCCCCEEEEEEEEC-CEEEEEEEECCC-Cc-eEEec--cCCCceEEeeEeCCEEEEE
Q 004735 343 LDAEFS-RPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDFG-HS-LSLLD--IPFTDIDNITLGNDCLFVE 416 (732)
Q Consensus 343 ~~~~~~-~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~-g~~~ly~~~~~~-~~-~~~lt--~~~~~v~~~~~~~~~~~~~ 416 (732)
...... ...|.. .|.+ +++.|+.+...+ ..+.|.++|+.. ++ +..+. .....+..+..++...+|+
T Consensus 208 H~g~~~s~~v~~~-----~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 208 HDGGKNTKNIWID-----GLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred ccCCceeEEEEee-----eEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEE
Confidence 111110 111221 1111 555555544332 234566667663 22 22222 2223333443344344455
Q ss_pred EeCCCCCcEEEEEEcCCCcceeeee
Q 004735 417 GASGVEPSSVAKVTLDDHKLKAVDF 441 (732)
Q Consensus 417 ~~~~~~~~~ly~~dl~~~~~~~lt~ 441 (732)
+++.+ ..++.+++..+....|++
T Consensus 280 sGkGD--~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 280 IGKGD--GNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred EEECC--CeEEEEEccCCcEEeecc
Confidence 54443 346666666666666654
No 226
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.09 E-value=7.8e-05 Score=67.09 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=81.5
Q ss_pred CCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhh
Q 004735 550 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 628 (732)
Q Consensus 550 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 628 (732)
|.....+|-.+.++..+..- .+.++|++||.|+.+++..+. ....+.++++++|..--....
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~-------------- 100 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEI-------------- 100 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccccc--------------
Confidence 44445677777776655542 445999999999999999887 444899999999863211000
Q ss_pred cCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 629 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 629 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+......+|.. ..++.-|.+++++.+|+.+++++++.+.+++.. .++....+||-
T Consensus 101 --~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHi 156 (181)
T COG3545 101 --RPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHI 156 (181)
T ss_pred --chhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheeccccccc
Confidence 011111122221 223456899999999999999999999999876 68888888994
No 227
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.09 E-value=6.2e-05 Score=74.83 Aligned_cols=179 Identities=12% Similarity=0.085 Sum_probs=107.1
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC-------CCeEeeceeecCCCCE---------------
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE-------PLVSYADGIFDPRFNR--------------- 204 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~-------~~~~~~~~~~spdG~~--------------- 204 (732)
..+.-|.|+.++|+...+..|-+++...| .-.+.|....-. ...-....+|.|-|++
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 45666677788889888887877777651 233444432100 0001122335555554
Q ss_pred ----------EEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 205 ----------YVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 205 ----------l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
++--++ ...+|+++....+ +++.+++.....+++..|||||++||-.++|.+
T Consensus 329 ~~~~~~~~erlVSgsD---------d~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-------- 390 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSD---------DFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKS-------- 390 (480)
T ss_pred HHhhccCcceeEEecC---------CceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccc--------
Confidence 222211 2678888765322 124566666667888999999999998886653
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecc-cccccCCCcee
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWV 353 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~ 353 (732)
+.+.+-. +|+. +..+.+.- ..+.+++||.|.+|++.... ...|-++++.+.+...=.+ ..-++....|+
T Consensus 391 VkLW~g~-tGk~--lasfRGHv----~~VYqvawsaDsRLlVS~Sk---DsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 391 VKLWDGR-TGKF--LASFRGHV----AAVYQVAWSADSRLLVSGSK---DSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred eeeeeCC-Ccch--hhhhhhcc----ceeEEEEeccCccEEEEcCC---CceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 4444555 7765 66666664 67889999999997766543 2446666676766543333 33344455676
Q ss_pred e
Q 004735 354 F 354 (732)
Q Consensus 354 ~ 354 (732)
+
T Consensus 461 p 461 (480)
T KOG0271|consen 461 P 461 (480)
T ss_pred C
Confidence 5
No 228
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.09 E-value=0.0016 Score=78.43 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=118.5
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-CC-c------ccccccccCCceeEEECCEEEE
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EY-A------VRTTAQEYGGGAFRIFGDTVIF 159 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~-~~-~------~~~~~~~~g~~~~~~~~~~i~f 159 (732)
..++++.+++ ++.+|+.+.. .+| +...+.. +.....+.. .. + ....+....+.++...++.|++
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~---n~r--I~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSN---HNR--IVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCceEEEECCCCeEEEEECC---CCe--EEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 4667899988 7889988763 344 4444443 122111111 00 0 0111111222233333556777
Q ss_pred EeCCCCeEEEEeCCCCCCCceecCCCC-------CC-C-----CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 160 SNYKDQRLYKHSIDSKDSSPLPITPDY-------GE-P-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~lt~~~-------~~-~-----~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.+.....|.++|+.+ +..+.+.... +. . -..-.+.+++|++..|+.. ... .+.|+++
T Consensus 641 aDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa-d~~-------~~~I~v~ 710 (1057)
T PLN02919 641 ADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA-MAG-------QHQIWEY 710 (1057)
T ss_pred EeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE-ECC-------CCeEEEE
Confidence 766667888999876 5555443210 00 0 0011456899977664444 322 3689999
Q ss_pred EcCCCCccccEEcccCC---------------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE
Q 004735 227 ALNGQNIQEPKVLVSGS---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC 291 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~---------------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~ 291 (732)
+..++. ...+.... ..-.+.+++|||++|+.... ...+|+++|++ +|......-
T Consensus 711 d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-------~n~~Irv~D~~-tg~~~~~~g 779 (1057)
T PLN02919 711 NISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-------ESSSIRALDLK-TGGSRLLAG 779 (1057)
T ss_pred ECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-------CCCeEEEEECC-CCcEEEEEe
Confidence 988765 43332110 01123578999998866542 23569999987 554311110
Q ss_pred -----------ecCCC-C---CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 292 -----------VAGFD-P---TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 292 -----------~~~~~-~---~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
+...+ . .....+..+.+++||++| +++. +..+|.++|++++....+.
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LY-VADs--~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIY-VADS--YNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEE-EEEC--CCCEEEEEECCCCeEEEEe
Confidence 00000 0 000134567789999754 5554 4567899999988877664
No 229
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.07 E-value=3.4e-05 Score=79.60 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=63.1
Q ss_pred hhhcCccccCCCCC-CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--cccHHHHHHHHHHHHH
Q 004735 635 YYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AENIKFTLEQQMVFFA 711 (732)
Q Consensus 635 ~~~~sp~~~~~~i~-~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~~~~~~~~~~fl~ 711 (732)
+...++...+.++. +|+|++||.+|..||...+.+++...+.. +.+..++++++|.... .....+.+..+.+||.
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 45556666677777 79999999999999999999999988765 6688888999998653 2333488999999999
Q ss_pred HHh
Q 004735 712 RVV 714 (732)
Q Consensus 712 ~~l 714 (732)
+.+
T Consensus 296 ~~l 298 (299)
T COG1073 296 RHL 298 (299)
T ss_pred Hhc
Confidence 876
No 230
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.04 E-value=7e-05 Score=79.19 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=99.8
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHH-HHCC--CEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHh--c
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYW-TSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG--S 568 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l-~~~G--~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 568 (732)
..|++|++||.|.......+.+..+.. .-.| .-|..+|++-..| |..... ..+-.+.+..+... .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig-G~nI~h---------~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG-GANIKH---------AAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC-CcchHH---------HHHHHHHHhhhhhhhhh
Confidence 358999999998433333333333333 2234 3345666652111 111000 01223333332222 2
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCC
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDK 646 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 646 (732)
+......|+|+|.|+|+.++.++.. ....+.++|++.-..+-..- ++ ..+-..+-.
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdg------------------pr----girDE~Lld 302 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDG------------------PR----GIRDEALLD 302 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCc------------------cc----CCcchhhHh
Confidence 4455678999999999877777665 33446777766433221110 00 001112335
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 695 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 695 (732)
++.|+|++.|.+|..+++...+++.+++++ .++++++.+++|.+.-
T Consensus 303 mk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 303 MKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred cCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 678999999999999999999999999987 6789999999998753
No 231
>COG3150 Predicted esterase [General function prediction only]
Probab=98.04 E-value=6.3e-05 Score=66.57 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh-hcchhhhhhhhhhcC-C
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-ETHKFESRYIDNLVG-S 631 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~-~~~~~~~~~~~~~~~-~ 631 (732)
...+.+-++-++.+.. | ..++|+|-|.|||.+.+++. +. +++ |+++|..-+..... ....-+..|....+- +
T Consensus 42 p~~a~~ele~~i~~~~-~-~~p~ivGssLGGY~At~l~~~~G--ira-v~~NPav~P~e~l~gylg~~en~ytg~~y~le 116 (191)
T COG3150 42 PQQALKELEKAVQELG-D-ESPLIVGSSLGGYYATWLGFLCG--IRA-VVFNPAVRPYELLTGYLGRPENPYTGQEYVLE 116 (191)
T ss_pred HHHHHHHHHHHHHHcC-C-CCceEEeecchHHHHHHHHHHhC--Chh-hhcCCCcCchhhhhhhcCCCCCCCCcceEEee
Confidence 4455666666665532 2 34999999999999999987 44 344 44455443322211 100000011100000 0
Q ss_pred hhhhhhcCccccCCCCCCC-EEEE-EeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 632 EKDYYEKSPINFVDKFSCP-IILF-QGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~i~~P-~Lii-~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
+.-.... -......++.| .+++ .-+.|.+....++.+.+... ...+..|+.|.|. .....++.++.|
T Consensus 117 ~~hI~~l-~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~---~f~~~l~~i~aF 185 (191)
T COG3150 117 SRHIATL-CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFK---GFSRHLQRIKAF 185 (191)
T ss_pred hhhHHHH-HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCcccc---chHHhHHHHHHH
Confidence 0000000 11223344444 4444 44448887777776666544 4567788999985 556778888887
Q ss_pred HH
Q 004735 710 FA 711 (732)
Q Consensus 710 l~ 711 (732)
..
T Consensus 186 ~g 187 (191)
T COG3150 186 KG 187 (191)
T ss_pred hc
Confidence 53
No 232
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.0047 Score=59.17 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=113.6
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.|+.+-..+..|-+++..++ ....-.+..++...-.....+|||.|++|+..+-+. ...||. -..+++.-
T Consensus 28 ~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~-------t~~Iw~--k~~~efec 97 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA-------TVVIWK--KEDGEFEC 97 (312)
T ss_pred eEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccc-------eEEEee--cCCCceeE
Confidence 36666666666777776531 111111111112344567889999999876654432 233433 22333211
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+..|.....-+-..+||++|++||-.+.+ ..+|+..++.+++..-..++.+.- +.+..+.|-|--.|+
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRD--------KSVWiWe~deddEfec~aVL~~Ht----qDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRD--------KSVWIWEIDEDDEFECIAVLQEHT----QDVKHVIWHPTEDLL 165 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCC--------CeEEEEEecCCCcEEEEeeecccc----ccccEEEEcCCccee
Confidence 22222222334567899999999987733 338888887567776666777665 678899999965588
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
|.... .+...+|+-+. .+....+...+.. ..-.|+. .|-+ .|.+++-. ..++...||++
T Consensus 166 ~S~SY-DnTIk~~~~~~-dddW~c~~tl~g~-~~TVW~~-----~F~~---~G~rl~s~-sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 166 FSCSY-DNTIKVYRDED-DDDWECVQTLDGH-ENTVWSL-----AFDN---IGSRLVSC-SDDGTVSIWRL 224 (312)
T ss_pred EEecc-CCeEEEEeecC-CCCeeEEEEecCc-cceEEEE-----EecC---CCceEEEe-cCCcceEeeee
Confidence 88877 66777887664 4433322211111 2256764 3432 45566544 45677788873
No 233
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.03 E-value=0.00093 Score=72.43 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=115.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE-CCEEEEEeCCCCeE
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF-GDTVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~-~~~i~f~~~~~~~l 167 (732)
+...+..+| |+.+.- ..++|+..+|-...+ ---++-. -|..+...+.+. .+..+++...+|.+
T Consensus 352 ~i~~l~YSpDgq~iaT----G~eDgKVKvWn~~Sg----fC~vTFt-------eHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIAT----GAEDGKVKVWNTQSG----FCFVTFT-------EHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ceeeEEECCCCcEEEe----ccCCCcEEEEeccCc----eEEEEec-------cCCCceEEEEEEecCCEEEEeecCCeE
Confidence 456777777 665543 124566555543211 0011100 022234445544 33677788889999
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC-CCce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~-~~~~ 246 (732)
-.+|+... ..-|..|.. ...++...+.+|.|..|.+-..+ ..+|++++..+|+ ..-+..| ++.+
T Consensus 417 RAwDlkRY-rNfRTft~P---~p~QfscvavD~sGelV~AG~~d--------~F~IfvWS~qTGq---llDiLsGHEgPV 481 (893)
T KOG0291|consen 417 RAWDLKRY-RNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQD--------SFEIFVWSVQTGQ---LLDILSGHEGPV 481 (893)
T ss_pred Eeeeeccc-ceeeeecCC---CceeeeEEEEcCCCCEEEeeccc--------eEEEEEEEeecCe---eeehhcCCCCcc
Confidence 99999752 345566654 25677888889999864433332 3899999999998 5544444 4556
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCe
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 324 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~ 324 (732)
....|||+|..||-.+||. . +.++|+- ..|+...+.+. ..+..+.++|||+ |.+.+-+ |+
T Consensus 482 s~l~f~~~~~~LaS~SWDk------T--VRiW~if~s~~~vEtl~i~--------sdvl~vsfrPdG~elaVaTld--gq 543 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDK------T--VRIWDIFSSSGTVETLEIR--------SDVLAVSFRPDGKELAVATLD--GQ 543 (893)
T ss_pred eeeEEccccCeEEeccccc------e--EEEEEeeccCceeeeEeec--------cceeEEEEcCCCCeEEEEEec--ce
Confidence 6778999999998888765 2 4444443 13444333322 2245789999999 8776654 54
Q ss_pred eeEE
Q 004735 325 WNLH 328 (732)
Q Consensus 325 ~~l~ 328 (732)
..+|
T Consensus 544 Itf~ 547 (893)
T KOG0291|consen 544 ITFF 547 (893)
T ss_pred EEEE
Confidence 4443
No 234
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0066 Score=59.52 Aligned_cols=249 Identities=14% Similarity=0.081 Sum_probs=129.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eeEEECCEEEEEeC-CC
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFGDTVIFSNY-KD 164 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~--~~~~~~~~i~f~~~-~~ 164 (732)
..+.++.+++ |..+.-.. ++...+||-. .+| .....+.. ..||.. .|......++.+.. .+
T Consensus 15 ~~i~sl~fs~~G~~litss----~dDsl~LYd~--~~g-~~~~ti~s--------kkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS----EDDSLRLYDS--LSG-KQVKTINS--------KKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEec----CCCeEEEEEc--CCC-ceeeEeec--------ccccccEEEEecCCceEEEccCCCC
Confidence 4667888887 66555422 2234444443 322 33222222 234543 34444455665543 34
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
..|-.+++.+ .+--+.-.+ +..++...+.+|-+...+-.+.+ ..|..+|+...+ ..-+..-..
T Consensus 80 ~tIryLsl~d--NkylRYF~G---H~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~---cqg~l~~~~ 142 (311)
T KOG1446|consen 80 DTIRYLSLHD--NKYLRYFPG---HKKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKK---CQGLLNLSG 142 (311)
T ss_pred CceEEEEeec--CceEEEcCC---CCceEEEEEecCCCCeEEecccC---------CeEEeeEecCCC---CceEEecCC
Confidence 5788888876 443333333 36788889999987643322221 467788888655 333321111
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
-.-++++|.|-.+|.. .+ ...|.++|+.. .|-.....+..+.. .....+.|||||+ |+..++.
T Consensus 143 -~pi~AfDp~GLifA~~--~~------~~~IkLyD~Rs~dkgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLlsT~~- 208 (311)
T KOG1446|consen 143 -RPIAAFDPEGLIFALA--NG------SELIKLYDLRSFDKGPFTTFSITDNDE----AEWTDLEFSPDGKSILLSTNA- 208 (311)
T ss_pred -CcceeECCCCcEEEEe--cC------CCeEEEEEecccCCCCceeEccCCCCc----cceeeeEEcCCCCEEEEEeCC-
Confidence 1225789999544433 22 22588888762 23332222221222 3346789999999 6655443
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt 397 (732)
..++.+|.=+|....-..+....... + -...|. .+..+++....+|.-++|.+ ++|......
T Consensus 209 ---s~~~~lDAf~G~~~~tfs~~~~~~~~---~--~~a~ft----Pds~Fvl~gs~dg~i~vw~~--~tg~~v~~~ 270 (311)
T KOG1446|consen 209 ---SFIYLLDAFDGTVKSTFSGYPNAGNL---P--LSATFT----PDSKFVLSGSDDGTIHVWNL--ETGKKVAVL 270 (311)
T ss_pred ---CcEEEEEccCCcEeeeEeeccCCCCc---c--eeEEEC----CCCcEEEEecCCCcEEEEEc--CCCcEeeEe
Confidence 34777887777644322221111100 0 112333 34456667777888888865 566544333
No 235
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00062 Score=74.71 Aligned_cols=162 Identities=14% Similarity=0.164 Sum_probs=98.9
Q ss_pred cCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 145 ~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
.++..+.++.+ ..+.....+..|.++|+..+....+.+... .......+|+|+|+.|+..+.+ ..+
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH----~~~v~~~~f~p~g~~i~Sgs~D---------~tv 270 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH----STYVTSVAFSPDGNLLVSGSDD---------GTV 270 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC----CCceEEEEecCCCCEEEEecCC---------CcE
Confidence 34444555444 355566677789999994310234455443 3455778899999765544442 478
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc-c
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-S 302 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~-~ 302 (732)
.++|+.+++. .+.|....+.+....|+|||+.|+-.+. ...|.++|+. +|...-...+.+.. . . .
T Consensus 271 riWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~--------d~~i~vwd~~-~~~~~~~~~~~~~~-~--~~~ 336 (456)
T KOG0266|consen 271 RIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASY--------DGTIRVWDLE-TGSKLCLKLLSGAE-N--SAP 336 (456)
T ss_pred EEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCC--------CccEEEEECC-CCceeeeecccCCC-C--CCc
Confidence 8889988761 3445455567778899999998876542 2348999998 67632123333332 1 1 3
Q ss_pred CcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe
Q 004735 303 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
+....|+|+|+.+++... .+...+ +|+..+.
T Consensus 337 ~~~~~fsp~~~~ll~~~~-d~~~~~--w~l~~~~ 367 (456)
T KOG0266|consen 337 VTSVQFSPNGKYLLSASL-DRTLKL--WDLRSGK 367 (456)
T ss_pred eeEEEECCCCcEEEEecC-CCeEEE--EEccCCc
Confidence 577889999984444433 344444 4555544
No 236
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.00 E-value=8.3e-05 Score=76.24 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-
Q 004735 515 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA- 593 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~- 593 (732)
..+..+.++|..|+.++.++ +..+.. ..++.....+++..+++.+++... .++|-++|+|.||.++..+++
T Consensus 130 s~V~~l~~~g~~vfvIsw~n-Pd~~~~-----~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRN-PDASLA-----AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccC-chHhhh-----hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHh
Confidence 47889999999999999864 221111 111111224667788888887643 368999999999999998888
Q ss_pred CCCc-ceEEEeecCcCCH
Q 004735 594 FRDT-FKAGASLYGVADL 610 (732)
Q Consensus 594 ~p~~-~~a~v~~~~~~d~ 610 (732)
++.+ ++.+..+....|+
T Consensus 202 ~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhcccccceeeecchhh
Confidence 6666 8877766655544
No 237
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.0026 Score=60.91 Aligned_cols=166 Identities=10% Similarity=0.082 Sum_probs=99.8
Q ss_pred eEeeceeecCC-CCEEEEEEeccCCCCCCceeEEEEEEcCCCC-ccccEEcccC-CCceeccccCCCCCeEEEEeccCCC
Q 004735 191 VSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPN 267 (732)
Q Consensus 191 ~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~ 267 (732)
.|....+|+|- |. |+++.... ..|-+++..++. .+-.+.|..+ ...+...+|||.|+.||-.+++..
T Consensus 15 ~r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t- 84 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT- 84 (312)
T ss_pred CcEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce-
Confidence 46778889997 66 56665533 355666665322 1001122222 234567899999999998885542
Q ss_pred CCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE---Eecccc
Q 004735 268 MPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLD 344 (732)
Q Consensus 268 ~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~ 344 (732)
..++.-. +++...+..+.+.+ .-+..++||++|+++.+..+ ...--||.++ ++++.. .|.+..
T Consensus 85 -------~~Iw~k~-~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 85 -------VVIWKKE-DGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEHT 150 (312)
T ss_pred -------EEEeecC-CCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeecccc
Confidence 3333323 67777677788876 66788999999995445544 2222344444 233433 233444
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
.++..-.|.| ..-|+++..-+..-.+|+-.. +..+.
T Consensus 151 qDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~-dddW~ 186 (312)
T KOG0645|consen 151 QDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED-DDDWE 186 (312)
T ss_pred ccccEEEEcC-------------CcceeEEeccCCeEEEEeecC-CCCee
Confidence 5556666764 345778887888888887654 44443
No 238
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.99 E-value=0.0067 Score=66.07 Aligned_cols=218 Identities=13% Similarity=0.053 Sum_probs=131.9
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+|++|+|-...-++|.+++..+ +.-.+... .+-.+.....+||||++|+.-.++ ..+-++|..+|-
T Consensus 318 tGDWiA~g~~klgQLlVweWqs---EsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eD---------gKVKvWn~~Sgf 383 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQS---ESYVLKQQ--GHSDRITSLAYSPDGQLIATGAED---------GKVKVWNTQSGF 383 (893)
T ss_pred cCCEEEEcCCccceEEEEEeec---cceeeecc--ccccceeeEEECCCCcEEEeccCC---------CcEEEEeccCce
Confidence 4888888877777898888874 22222211 013456778899999987665553 466777877664
Q ss_pred ccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
... .++....+....|+.+|+.|+-.+.| +.+..+|+. .. ++.+.+....| .....++-.|-
T Consensus 384 ---C~vTFteHts~Vt~v~f~~~g~~llssSLD--------GtVRAwDlk-RY--rNfRTft~P~p---~QfscvavD~s 446 (893)
T KOG0291|consen 384 ---CFVTFTEHTSGVTAVQFTARGNVLLSSSLD--------GTVRAWDLK-RY--RNFRTFTSPEP---IQFSCVAVDPS 446 (893)
T ss_pred ---EEEEeccCCCceEEEEEEecCCEEEEeecC--------CeEEeeeec-cc--ceeeeecCCCc---eeeeEEEEcCC
Confidence 322 23444456778999999988666533 347788887 34 33455555432 23344555566
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~ 390 (732)
|.|++... .+...|++++.++|+...+..+ ++.+....+++ .+. ++++..-+..-++|-+=-..
T Consensus 447 GelV~AG~--~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~------------~~~-~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 447 GELVCAGA--QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP------------DGS-LLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCEEEeec--cceEEEEEEEeecCeeeehhcCCCCcceeeEEcc------------ccC-eEEeccccceEEEEEeeccC
Confidence 77766554 4778999999999998887744 32332222332 555 44455556667777665555
Q ss_pred CceEEeccCCCceEEe--eEeCCEEEEEE
Q 004735 391 HSLSLLDIPFTDIDNI--TLGNDCLFVEG 417 (732)
Q Consensus 391 ~~~~~lt~~~~~v~~~--~~~~~~~~~~~ 417 (732)
++.+.|.-.. ++..+ .++++.+.+.+
T Consensus 512 ~~vEtl~i~s-dvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 512 GTVETLEIRS-DVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ceeeeEeecc-ceeEEEEcCCCCeEEEEE
Confidence 5666665432 34444 34455554433
No 239
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.99 E-value=0.0036 Score=63.42 Aligned_cols=237 Identities=11% Similarity=-0.008 Sum_probs=112.0
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEecc-CCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
+++|++|.++ ++..=..+ .-....+..||||+.++....-- +..-.....-|-++|..+-.......|...+
T Consensus 17 ~rv~viD~d~--~k~lGmi~-----~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADS--GKLLGMID-----TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTT--TEEEEEEE-----EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCC--CcEEEEee-----cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 4789999775 43221111 11235577999999965432210 0000011356667888875411122343321
Q ss_pred C-----ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 244 D-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 244 ~-----~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
. ......+|+|||++++..... .+.+-|+|++ .+++......++.. .-.-+.+++ +. ..
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TP------a~SVtVVDl~-~~kvv~ei~~PGC~-------~iyP~~~~~-F~-~l 153 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTP------ATSVTVVDLA-AKKVVGEIDTPGCW-------LIYPSGNRG-FS-ML 153 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESS------SEEEEEEETT-TTEEEEEEEGTSEE-------EEEEEETTE-EE-EE
T ss_pred hheecccccceEEccCCcEEEEEccCC------CCeEEEEECC-CCceeeeecCCCEE-------EEEecCCCc-eE-EE
Confidence 1 223457899999987665332 4669999998 67663322233321 111122222 33 22
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe--
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL-- 396 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l-- 396 (732)
.. .|.-.-+.+|.++...+..++.......|.+.. ..+.. +++.++|.+.. ..||.+++.+...+..
T Consensus 154 C~-DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~----~~~~~---~~~~~~F~Sy~---G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 154 CG-DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEH----PAYSR---DGGRLYFVSYE---GNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp ET-TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S------EEET---TTTEEEEEBTT---SEEEEEEETTSSEEEEEE
T ss_pred ec-CCceEEEEECCCCCEeEeeccccCCCCcccccc----cceEC---CCCeEEEEecC---CEEEEEeccCCcccccCc
Confidence 33 354444455554444333221111111222211 11111 55677776532 3678888877654432
Q ss_pred ----cc----CC-----CceEEeeEeCCEEEEEEeCC------CCCcEEEEEEcCCCc
Q 004735 397 ----DI----PF-----TDIDNITLGNDCLFVEGASG------VEPSSVAKVTLDDHK 435 (732)
Q Consensus 397 ----t~----~~-----~~v~~~~~~~~~~~~~~~~~------~~~~~ly~~dl~~~~ 435 (732)
+. .. |.+..+....+++++..-.. +...+||++|+++++
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 11 12 22333344566777655321 222459999999876
No 240
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.0016 Score=62.99 Aligned_cols=217 Identities=18% Similarity=0.142 Sum_probs=120.1
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
.+..+..++|--.+-+++..+.+ +--+++|..+.+. +..+.. +.-|+..=.|||||++||-+..+.+.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPG-------tf~~vfD~~~~~~--pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~- 137 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPG-------TFAMVFDPNGAQE--PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP- 137 (366)
T ss_pred cccCCeecCCCCcceEEEEecCC-------ceEEEECCCCCcC--cEEEecccCceeecccccCCCCcEEEeecCCCCC-
Confidence 34467788886655444443332 4667889887651 444443 34477788999999988776655433
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc------CC---------eeeEEEEecc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK------NG---------FWNLHKWIES 333 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~------~g---------~~~l~~~d~~ 333 (732)
+..-|-++|.. .+ ..++-.+.... ....++.|.+||+++...+.. -| ...|..+|..
T Consensus 138 --~rGViGvYd~r-~~-fqrvgE~~t~G----iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 138 --NRGVIGVYDAR-EG-FQRVGEFSTHG----IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred --CCceEEEEecc-cc-cceecccccCC----cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 46678899876 22 32233334443 667889999999955555430 11 1235566655
Q ss_pred CCeEE-Eec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE----EEEEEEECCCCceEEeccCCC------
Q 004735 334 NNEVL-AIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR----SYLGILDDFGHSLSLLDIPFT------ 401 (732)
Q Consensus 334 ~g~~~-~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~----~~ly~~~~~~~~~~~lt~~~~------ 401 (732)
+|+.. +.+ +. . .-....+.+..- .++.++|...-.|. .-|.-.-..++.++.+..+..
T Consensus 210 tG~liekh~Lp~--~----l~~lSiRHld~g----~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 210 TGNLIEKHTLPA--S----LRQLSIRHLDIG----RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred ccchhhhccCch--h----hhhcceeeeeeC----CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 55421 111 11 0 001122223222 56677777654443 335555566666776665532
Q ss_pred -ceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 402 -DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 402 -~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
.+.++ ......++..++-.. ...+.+|.++|.+.
T Consensus 280 nYigsiA~n~~~glV~lTSP~G--N~~vi~da~tG~vv 315 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRG--NRAVIWDAATGAVV 315 (366)
T ss_pred hhhhheeecccCCeEEEecCCC--CeEEEEEcCCCcEE
Confidence 23333 233345555554332 34677889999863
No 241
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.94 E-value=1.4e-05 Score=63.53 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=46.9
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
|.++.+..|.|++ . ++.+|+++||. ......+..+++.|+++||.|+++|+||.+.+
T Consensus 1 G~~L~~~~w~p~~-------~-~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S 57 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-------P-PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRS 57 (79)
T ss_pred CcEEEEEEecCCC-------C-CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCC
Confidence 5678888899975 2 67899999997 44455678899999999999999999986654
No 242
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.93 E-value=0.00076 Score=69.39 Aligned_cols=214 Identities=12% Similarity=0.086 Sum_probs=124.8
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC-CcccHHHHHHHHCCCEEEEEcCCCCCCC
Q 004735 460 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGSTGY 538 (732)
Q Consensus 460 ~~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~-~~~~~~~~~l~~~G~~v~~~d~rG~~g~ 538 (732)
.-|.+++.. ++.++-+ +|.|.. .+...-+||++||.+..... .....+.+.|.+.|++.+.+..+.-...
T Consensus 61 ~~e~~~L~~--~~~~fla-L~~~~~------~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~ 131 (310)
T PF12048_consen 61 ADEVQWLQA--GEERFLA-LWRPAN------SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPP 131 (310)
T ss_pred HhhcEEeec--CCEEEEE-EEeccc------CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccc
Confidence 345566665 4556654 456654 25567899999996444332 3345678889999999999876541100
Q ss_pred ---------------Chhh--HH------------hhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHH
Q 004735 539 ---------------GREF--RE------------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589 (732)
Q Consensus 539 ---------------g~~~--~~------------~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~ 589 (732)
+..- .. .....+-.....-+.+++.++.+++ ..+|+|+||+.|+++++
T Consensus 132 ~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~ 208 (310)
T PF12048_consen 132 ASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAA 208 (310)
T ss_pred cCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHH
Confidence 0000 00 0000000011334556667776664 34599999999999999
Q ss_pred HHHh--CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHH
Q 004735 590 AALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQA 667 (732)
Q Consensus 590 ~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~ 667 (732)
.++. .+..+.+.|++++........ ..-...+.+++.|+|=|++.+... ....+
T Consensus 209 ~~la~~~~~~~daLV~I~a~~p~~~~n-----------------------~~l~~~la~l~iPvLDi~~~~~~~-~~~~a 264 (310)
T PF12048_consen 209 RYLAEKPPPMPDALVLINAYWPQPDRN-----------------------PALAEQLAQLKIPVLDIYSADNPA-SQQTA 264 (310)
T ss_pred HHHhcCCCcccCeEEEEeCCCCcchhh-----------------------hhHHHHhhccCCCEEEEecCCChH-HHHHH
Confidence 9988 444588999998865432210 011123556789999999887332 22222
Q ss_pred HHHHHHH-HhC-CCCEEEEEeCCCCccCCCcccHHH-HHHHHHHHHHHH
Q 004735 668 RKIYKAL-KEN-GLPVALVEYEGEQHGFRKAENIKF-TLEQQMVFFARV 713 (732)
Q Consensus 668 ~~~~~~l-~~~-g~~~~~~~~~~~gH~~~~~~~~~~-~~~~~~~fl~~~ 713 (732)
.....+ +++ ....+-+.+.+..|... ...+ ..++|..|++++
T Consensus 265 -~~R~~~a~r~~~~~YrQ~~L~~~~~~~~---~~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 265 -KQRKQAAKRNKKPDYRQIQLPGLPDNPS---GWQEQLLRRIRGWLKRH 309 (310)
T ss_pred -HHHHHHHHhccCCCceeEecCCCCCChh---hHHHHHHHHHHHHHHhh
Confidence 222222 222 23456666677666542 2233 888899998875
No 243
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.91 E-value=0.0054 Score=59.40 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=136.6
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
++.|+.| +.+++...++.|.++|.-+. .+...++-. ..-....+|||.|++|++-.-+. .-.||-+.
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN-------~Csiy~ls 127 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDN-------KCSIYPLS 127 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcCc-------eeEEEecc
Confidence 3444444 56677778899999998762 344444432 33445678999999987754322 35666555
Q ss_pred cC--CCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 228 LN--GQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 228 ~~--~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
.. .+.....+.|....++..-.+|-+|+. |.-.+ ......++|++ +|.. ...+.+.. +.+..
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT~S--------GD~TCalWDie-~g~~--~~~f~GH~----gDV~s 191 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILTGS--------GDMTCALWDIE-TGQQ--TQVFHGHT----GDVMS 191 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCc-eEecC--------CCceEEEEEcc-cceE--EEEecCCc----ccEEE
Confidence 33 222111344555566667778887765 54433 24557788998 7754 67777775 67788
Q ss_pred ceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 306 PKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 306 ~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
+..+| |++.+....- ... -+++|...+..++-.++ +.++ +.+.|.| +|..| .+...++.-++
T Consensus 192 lsl~p~~~ntFvSg~c-D~~--aklWD~R~~~c~qtF~ghesDI---------Nsv~ffP---~G~af-atGSDD~tcRl 255 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGC-DKS--AKLWDVRSGQCVQTFEGHESDI---------NSVRFFP---SGDAF-ATGSDDATCRL 255 (343)
T ss_pred EecCCCCCCeEEeccc-ccc--eeeeeccCcceeEeeccccccc---------ceEEEcc---CCCee-eecCCCceeEE
Confidence 88999 7775544332 333 34456666665554433 3333 3445553 55444 44456777888
Q ss_pred EEEECCCCceEEeccCC---CceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 384 GILDDFGHSLSLLDIPF---TDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 384 y~~~~~~~~~~~lt~~~---~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
|-+. ..+...+-..+ ..+..+ .+-.++++|..... ....++|.-.++
T Consensus 256 yDlR--aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d---~~c~vWDtlk~e 306 (343)
T KOG0286|consen 256 YDLR--ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD---FTCNVWDTLKGE 306 (343)
T ss_pred Eeec--CCcEEeeeccCcccCCceeEEEcccccEEEeeecC---CceeEeeccccc
Confidence 8554 33332332232 235555 34456777766433 345666644443
No 244
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.90 E-value=0.0035 Score=60.32 Aligned_cols=226 Identities=9% Similarity=0.005 Sum_probs=131.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.+.|.....+.|=.+|..+ |+.++..-+. +.+-......|||..+ +++.. ..|-++|.++.+
T Consensus 74 ~VWft~qg~gaiGhLdP~t--Gev~~ypLg~---Ga~Phgiv~gpdg~~W--itd~~--------~aI~R~dpkt~e--- 135 (353)
T COG4257 74 AVWFTAQGTGAIGHLDPAT--GEVETYPLGS---GASPHGIVVGPDGSAW--ITDTG--------LAIGRLDPKTLE--- 135 (353)
T ss_pred ceEEecCccccceecCCCC--CceEEEecCC---CCCCceEEECCCCCee--EecCc--------ceeEEecCcccc---
Confidence 4777776677788889888 7777665442 2233456688999864 33321 478899988877
Q ss_pred cEEcc----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 236 PKVLV----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 236 ~~~lt----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
+++.+ ........+.|.|+|. |.|+.... . --..|.. .+. +.++.... . .....++-.||
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G--~------yGrLdPa-~~~---i~vfpaPq-G--~gpyGi~atpd 199 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGN-LWFTGQIG--A------YGRLDPA-RNV---ISVFPAPQ-G--GGPYGICATPD 199 (353)
T ss_pred eEEeecccccCCCcccceeeCCCcc-EEEeeccc--c------ceecCcc-cCc---eeeeccCC-C--CCCcceEECCC
Confidence 55543 2234456789999997 77876321 1 1123333 222 23333322 1 45678889999
Q ss_pred CcEEEEEeccCCeeeEEEEeccCCeEEEecccc--cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC
Q 004735 312 GELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 389 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~ 389 (732)
|+++|.+-. + ..|.++|+.++..+.+...+ .....-.|+. .-+++. .+ ..+...++++|+.
T Consensus 200 Gsvwyasla--g-naiaridp~~~~aev~p~P~~~~~gsRriwsd------------pig~~w-it-twg~g~l~rfdPs 262 (353)
T COG4257 200 GSVWYASLA--G-NAIARIDPFAGHAEVVPQPNALKAGSRRIWSD------------PIGRAW-IT-TWGTGSLHRFDPS 262 (353)
T ss_pred CcEEEEecc--c-cceEEcccccCCcceecCCCcccccccccccC------------ccCcEE-Ee-ccCCceeeEeCcc
Confidence 998887654 2 34888999888666665221 2223345652 233444 33 3466789999998
Q ss_pred CCceEEeccC--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 390 GHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 390 ~~~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
...++.-..+ .-.-.++ +++-+++.+.-.. ...|.++|.++..
T Consensus 263 ~~sW~eypLPgs~arpys~rVD~~grVW~sea~---agai~rfdpeta~ 308 (353)
T COG4257 263 VTSWIEYPLPGSKARPYSMRVDRHGRVWLSEAD---AGAIGRFDPETAR 308 (353)
T ss_pred cccceeeeCCCCCCCcceeeeccCCcEEeeccc---cCceeecCcccce
Confidence 8877644433 3333334 3333444432222 2356677665554
No 245
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.001 Score=65.00 Aligned_cols=136 Identities=11% Similarity=0.072 Sum_probs=80.8
Q ss_pred eEEECCEEEEEeCCCC-eEEEEeCCC-CCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSNYKDQ-RLYKHSIDS-KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~-~l~~~d~~~-~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.+.++..++|.....+ .|-++|+.. +.|.-+...... +...++.+..|||||+.|+.... .+.++++|
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~---------~s~~~~lD 215 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTN---------ASFIYLLD 215 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeC---------CCcEEEEE
Confidence 3445555666544333 788888864 102212111111 12467788999999999776654 36899999
Q ss_pred cCCCCccccEEcccC----CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 228 LNGQNIQEPKVLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~----~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
.=.|. +..-..+ ........|+|||+.|.-.+ +...|++++++ +|.. +..+.+.. . ..+
T Consensus 216 Af~G~---~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs--------~dg~i~vw~~~-tg~~--v~~~~~~~-~--~~~ 278 (311)
T KOG1446|consen 216 AFDGT---VKSTFSGYPNAGNLPLSATFTPDSKFVLSGS--------DDGTIHVWNLE-TGKK--VAVLRGPN-G--GPV 278 (311)
T ss_pred ccCCc---EeeeEeeccCCCCcceeEEECCCCcEEEEec--------CCCcEEEEEcC-CCcE--eeEecCCC-C--CCc
Confidence 88776 3332222 22234678999999875443 24559999998 7765 33333321 1 344
Q ss_pred cCceeCCCC
Q 004735 304 TEPKWSSKG 312 (732)
Q Consensus 304 ~~~~wspDg 312 (732)
.-+.|.|--
T Consensus 279 ~~~~fnP~~ 287 (311)
T KOG1446|consen 279 SCVRFNPRY 287 (311)
T ss_pred cccccCCce
Confidence 566788753
No 246
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.88 E-value=0.00068 Score=67.62 Aligned_cols=202 Identities=14% Similarity=0.067 Sum_probs=115.5
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHH-HHHHHHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND-CCSCATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D-~~~~i~~l~~~~~~d~~ 574 (732)
|+||++ |.. +..........+.+.+.|+.++.+-.+-. .-.. ....... +...++.+.+....+..
T Consensus 1 plvvl~-gW~-gA~~~hl~KY~~~Y~~~g~~il~~~~~~~--------~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~ 67 (240)
T PF05705_consen 1 PLVVLL-GWM-GAKPKHLAKYSDLYQDPGFDILLVTSPPA--------DFFW---PSKRLAPAADKLLELLSDSQSASPP 67 (240)
T ss_pred CEEEEE-eCC-CCCHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHee---eccchHHHHHHHHHHhhhhccCCCC
Confidence 566655 542 22223344466677779999998876421 0000 0011222 22334444443332234
Q ss_pred cEEEEEcChHHHHHHHHHh---C--------CCcceEEEeecCcCCHH------HHHhhcchh-------hhhhhhh---
Q 004735 575 RLCITGGSAGGYTTLAALA---F--------RDTFKAGASLYGVADLS------MLRAETHKF-------ESRYIDN--- 627 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~---~--------p~~~~a~v~~~~~~d~~------~~~~~~~~~-------~~~~~~~--- 627 (732)
+|.+..+|.||...+..+. + -+++++.|.-+...... .+....... .......
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLR 147 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 8999999998777655432 1 11377777766553211 111111110 0000000
Q ss_pred -------hcC--Ch-hhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcc
Q 004735 628 -------LVG--SE-KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE 697 (732)
Q Consensus 628 -------~~~--~~-~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~ 697 (732)
... +. ..+....-........+|-|++.++.|.+++.++.+++.+..++.|.+++...|++..|.-....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~ 227 (240)
T PF05705_consen 148 LSIISYFIFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRK 227 (240)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhccc
Confidence 000 11 11111111112234568999999999999999999999999999999999999999999765556
Q ss_pred cHHHHHHHHHHHH
Q 004735 698 NIKFTLEQQMVFF 710 (732)
Q Consensus 698 ~~~~~~~~~~~fl 710 (732)
..++.++.+.+|+
T Consensus 228 ~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 228 HPDRYWRAVDEFW 240 (240)
T ss_pred CHHHHHHHHHhhC
Confidence 7788888887764
No 247
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.86 E-value=0.00025 Score=74.93 Aligned_cols=200 Identities=15% Similarity=0.174 Sum_probs=106.9
Q ss_pred eEEECCEEEEEeCC-CCeEEEEeCCCCCCCceecCCCCC---CCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEE
Q 004735 150 FRIFGDTVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYG---EPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 150 ~~~~~~~i~f~~~~-~~~l~~~d~~~~~~~~~~lt~~~~---~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
|.....++++.-.. .|.|-++++.. +-+|..+.- ..+....|+.|.| |..+|+...++. .-+||
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~----PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-------~i~lW 655 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNE----PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-------QINLW 655 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCC----CCCCCcccccccccCceeeecccCCCChHHeeecccCc-------eEEEE
Confidence 33344455555433 45777888753 333433210 0134567889999 888877666543 46889
Q ss_pred EEEcCCCC---ccccEEcccCCCceeccccCCCCC-eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 225 AIALNGQN---IQEPKVLVSGSDFYAFPRMDPRGE-RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 225 ~~d~~~~~---~~~~~~lt~~~~~~~~p~~SPDG~-~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
++...+.. .++...|+.+.+.+...+|.|=-. -|+..+ .+..|-++|+. +++. ...+.+..
T Consensus 656 r~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--------yd~Ti~lWDl~-~~~~--~~~l~gHt---- 720 (1012)
T KOG1445|consen 656 RLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--------YDSTIELWDLA-NAKL--YSRLVGHT---- 720 (1012)
T ss_pred EeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh--------ccceeeeeehh-hhhh--hheeccCc----
Confidence 88877653 111233343334444455555111 122111 24557888988 6654 33344544
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccccc----CCCceeecccceeeeeecCCCCEEEEEE
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF----SRPLWVFGINSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~l~~~s 375 (732)
..+..++|||||+ ++-+.. .|. |.++++..++. .|-.++..+ ....|.. +|+.++++.
T Consensus 721 dqIf~~AWSpdGr~~AtVcK--Dg~--~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wac------------dgr~viv~G 783 (1012)
T KOG1445|consen 721 DQIFGIAWSPDGRRIATVCK--DGT--LRVYEPRSREQ-PVYEGKGPVGTRGARILWAC------------DGRIVIVVG 783 (1012)
T ss_pred CceeEEEECCCCcceeeeec--Cce--EEEeCCCCCCC-ccccCCCCccCcceeEEEEe------------cCcEEEEec
Confidence 5678999999999 554443 354 55566766543 333222211 1234554 666666554
Q ss_pred E-ECCEEEEEEEECCCCc
Q 004735 376 R-QNGRSYLGILDDFGHS 392 (732)
Q Consensus 376 ~-~~g~~~ly~~~~~~~~ 392 (732)
. ....++|-+|+.++-.
T Consensus 784 fdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ccccchhhhhhhhhhhcc
Confidence 3 3344556556654433
No 248
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.84 E-value=0.0047 Score=61.54 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=56.4
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++-....+..|.++|+++ +.-.+|.... .-.+.-..|||||.++++.+-+. ...||. ... .++.
T Consensus 209 ~l~tAS~gsssi~iWdpdt--g~~~pL~~~g---lgg~slLkwSPdgd~lfaAt~da-------vfrlw~--e~q-~wt~ 273 (445)
T KOG2139|consen 209 ILVTASFGSSSIMIWDPDT--GQKIPLIPKG---LGGFSLLKWSPDGDVLFAATCDA-------VFRLWQ--ENQ-SWTK 273 (445)
T ss_pred EEeecccCcceEEEEcCCC--CCcccccccC---CCceeeEEEcCCCCEEEEecccc-------eeeeeh--hcc-ccee
Confidence 4443444556899999998 6666666321 12235568999999877665433 134442 111 1111
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccC
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
.+.++ +.+.+....|||+|++|.|.....
T Consensus 274 erw~l-gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 274 ERWIL-GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred cceec-cCCceeeeeecCCCCEEEEEEcCC
Confidence 23332 333778889999999999987433
No 249
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.80 E-value=2.5e-05 Score=88.34 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=85.1
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCC-cc--cHHHHHHHHCCCEEEEEcCCCC-CCCChhhHHhhc
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLL 547 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~-~~--~~~~~~l~~~G~~v~~~d~rG~-~g~g~~~~~~~~ 547 (732)
...++.-+|.|.... ..+ .|++|++|||....... .+ ......+..+..+|+.++||-. -|+...-.....
T Consensus 94 EDCLylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~ 168 (545)
T KOG1516|consen 94 EDCLYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAP 168 (545)
T ss_pred CCCceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCC
Confidence 345777888887621 112 89999999985433221 11 2223344556799999999942 222111111124
Q ss_pred cCCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEeecCcC
Q 004735 548 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 608 (732)
Q Consensus 548 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~~~~~ 608 (732)
+++| ..|...|++|+.++ -.-|+++|.|+|||+||..+..++. ...+|..+|..+|..
T Consensus 169 gN~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 169 GNLG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred Cccc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 4444 67999999999775 3468999999999999999977776 335788888877754
No 250
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.80 E-value=0.0055 Score=57.99 Aligned_cols=228 Identities=11% Similarity=0.052 Sum_probs=122.2
Q ss_pred CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC
Q 004735 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG 242 (732)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~ 242 (732)
..++|-++|+.+ +.+.++..-++ +........|.-||++. |+..++ ..+-++|+..-. ..++...
T Consensus 59 ~~qhvRlyD~~S--~np~Pv~t~e~-h~kNVtaVgF~~dgrWM-yTgseD--------gt~kIWdlR~~~---~qR~~~~ 123 (311)
T KOG0315|consen 59 GNQHVRLYDLNS--NNPNPVATFEG-HTKNVTAVGFQCDGRWM-YTGSED--------GTVKIWDLRSLS---CQRNYQH 123 (311)
T ss_pred cCCeeEEEEccC--CCCCceeEEec-cCCceEEEEEeecCeEE-EecCCC--------ceEEEEeccCcc---cchhccC
Confidence 456788999988 66644432211 12345566788999974 544333 355566776644 4555544
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
...++.....|+...|. +. +.+ ..|++.|+. .... ...++++.+ ..+......|||+.+...+. .
T Consensus 124 ~spVn~vvlhpnQteLi-s~-dqs------g~irvWDl~-~~~c-~~~liPe~~----~~i~sl~v~~dgsml~a~nn-k 188 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELI-SG-DQS------GNIRVWDLG-ENSC-THELIPEDD----TSIQSLTVMPDGSMLAAANN-K 188 (311)
T ss_pred CCCcceEEecCCcceEE-ee-cCC------CcEEEEEcc-CCcc-ccccCCCCC----cceeeEEEcCCCcEEEEecC-C
Confidence 45566677888877764 33 443 349999997 3322 134556665 77888999999994434444 4
Q ss_pred CeeeEEEEeccCCe----EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 323 GFWNLHKWIESNNE----VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 323 g~~~l~~~d~~~g~----~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
|. .|.+++-++. ..++++....... . -...++| |+++|+..+ .+..-.||..+.-=+..++|+.
T Consensus 189 G~--cyvW~l~~~~~~s~l~P~~k~~ah~~~---i---l~C~lSP---d~k~lat~s-sdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 189 GN--CYVWRLLNHQTASELEPVHKFQAHNGH---I---LRCLLSP---DVKYLATCS-SDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred cc--EEEEEccCCCccccceEhhheecccce---E---EEEEECC---CCcEEEeec-CCceEEEEecCCceeeEEEeec
Confidence 54 4444443432 2333322111110 0 0112332 666555443 4444556644422123446666
Q ss_pred CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 399 PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 399 ~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+...+-+. .+.++++++.+++. ....|| |++.++
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd-~~~rlW--~~~~~k 291 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSD-HTARLW--DLSAGK 291 (311)
T ss_pred CCceEEeeeeccCccEEEecCCC-Cceeec--ccccCc
Confidence 65444444 55566666666554 444454 445554
No 251
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.80 E-value=0.0057 Score=59.24 Aligned_cols=200 Identities=11% Similarity=0.038 Sum_probs=121.6
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
........|++|+++|+-.+.+ ..|.++|.-+.. ++..++-....+..-++||.|+.+|.-..+.
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~Ttn--K~haipl~s~WVMtCA~sPSg~~VAcGGLdN---- 119 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPSGNFVACGGLDN---- 119 (343)
T ss_pred ccceeeeEecCCcCeEEeeccC---------CeEEEEEccccc--ceeEEecCceeEEEEEECCCCCeEEecCcCc----
Confidence 3445667799999997665542 578888877643 1666666667788889999999988765333
Q ss_pred CCccEEEEEEec-CCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc-cccc
Q 004735 270 WDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEF 347 (732)
Q Consensus 270 ~~~~~l~v~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~ 347 (732)
.-.||-+... .+|.....+.+.+.. +++.-..+-+|+.|+-. .|......+|+++|+......+ ..++
T Consensus 120 --~Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 120 --KCSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred --eeEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccE
Confidence 2334444322 134444455677775 88888899998876533 3556677789999887666533 2233
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcE
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSS 425 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ 425 (732)
-... +.| .+...+++..-+....||- ...+. .+.....+.+|..+ ..+++ ..|.+.+.+..-+
T Consensus 190 ~sls---------l~p---~~~ntFvSg~cD~~aklWD--~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcR 254 (343)
T KOG0286|consen 190 MSLS---------LSP---SDGNTFVSGGCDKSAKLWD--VRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCR 254 (343)
T ss_pred EEEe---------cCC---CCCCeEEecccccceeeee--ccCcceeEeecccccccceEEEccCC-CeeeecCCCceeE
Confidence 2222 222 2333445555566677774 44444 44455557778887 34444 3445555555555
Q ss_pred EEEE
Q 004735 426 VAKV 429 (732)
Q Consensus 426 ly~~ 429 (732)
+|-+
T Consensus 255 lyDl 258 (343)
T KOG0286|consen 255 LYDL 258 (343)
T ss_pred EEee
Confidence 5544
No 252
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.79 E-value=0.00025 Score=70.21 Aligned_cols=97 Identities=10% Similarity=-0.000 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHH-HHHHHHhcCCCCCCc
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKADEKR 575 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~r 575 (732)
.|+++|++.+ ....|..+++.+...++.|+.++++|...... ....++++.+ .++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG--~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~----------~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGG--SASSYRPLARALPDDVIGVYGIEYPGRGDDEP----------PPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTC--SGGGGHHHHHHHTTTEEEEEEECSTTSCTTSH----------EESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCcc--CHHHHHHHHHhCCCCeEEEEEEecCCCCCCCC----------CCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 5888998743 55677778887766568899999986541111 0122333332 233333331 2238
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEeecCc
Q 004735 576 LCITGGSAGGYTTLAALA----FRDTFKAGASLYGV 607 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~ 607 (732)
+.|+|||+||.+|+.++. ....+..++++.+.
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~ 103 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSP 103 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCS
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecCC
Confidence 999999999999998886 44557778777743
No 253
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00045 Score=67.19 Aligned_cols=263 Identities=11% Similarity=0.004 Sum_probs=140.1
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccc--ccccCCceeEEECC-EEEEEeCCCC
Q 004735 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD-TVIFSNYKDQ 165 (732)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~--~~~~g~~~~~~~~~-~i~f~~~~~~ 165 (732)
.+++.++|| |+.+.--. -+|-+.+|.+..+ +.++-+. +.+... ..+....+..++.| .++.+...+|
T Consensus 215 h~EcA~FSPDgqyLvsgS----vDGFiEVWny~~G---KlrKDLk--YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGS----VDGFIEVWNYTTG---KLRKDLK--YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred chhheeeCCCCceEeecc----ccceeeeehhccc---hhhhhhh--hhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 468999999 66554322 3577777877544 3322211 111111 11122334444433 3444444567
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.|-++.+.+| .-.|+.... +.......+||.|+.+|+-..-+ ..+-+..+.+|+. .+..-....+
T Consensus 286 kIKvWri~tG-~ClRrFdrA---HtkGvt~l~FSrD~SqiLS~sfD---------~tvRiHGlKSGK~--LKEfrGHsSy 350 (508)
T KOG0275|consen 286 KIKVWRIETG-QCLRRFDRA---HTKGVTCLSFSRDNSQILSASFD---------QTVRIHGLKSGKC--LKEFRGHSSY 350 (508)
T ss_pred cEEEEEEecc-hHHHHhhhh---hccCeeEEEEccCcchhhccccc---------ceEEEeccccchh--HHHhcCcccc
Confidence 7777776662 334444321 12223556799999987654332 3444455666651 2222233457
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe--cCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV--AGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~--~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
++...|++||.+|.-.+.+ ..+-+++.+ +++. ...+ .+.+ ..+..+-.-|..- -+.+.++
T Consensus 351 vn~a~ft~dG~~iisaSsD--------gtvkvW~~K-tteC--~~Tfk~~~~d----~~vnsv~~~PKnpeh~iVCNr-- 413 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSD--------GTVKVWHGK-TTEC--LSTFKPLGTD----YPVNSVILLPKNPEHFIVCNR-- 413 (508)
T ss_pred ccceEEcCCCCeEEEecCC--------ccEEEecCc-chhh--hhhccCCCCc----ccceeEEEcCCCCceEEEEcC--
Confidence 7788999999999766532 236666666 4443 1111 1222 4455555556554 4455555
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccCCC
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIPFT 401 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~~~ 401 (732)
...+|+++..+.-++....++.+-+ .+.. ....+ .|.++|...+ + ..+|-+...+|.+ +.++-..-
T Consensus 414 -sntv~imn~qGQvVrsfsSGkREgG--dFi~----~~lSp---kGewiYcigE-D--~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 414 -SNTVYIMNMQGQVVRSFSSGKREGG--DFIN----AILSP---KGEWIYCIGE-D--GVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred -CCeEEEEeccceEEeeeccCCccCC--ceEE----EEecC---CCcEEEEEcc-C--cEEEEEEeecCceeeeeecccc
Confidence 2458899998877777775543322 2221 11122 6777776654 2 3577777666665 44555444
Q ss_pred ceEEe
Q 004735 402 DIDNI 406 (732)
Q Consensus 402 ~v~~~ 406 (732)
++..+
T Consensus 481 dvIGl 485 (508)
T KOG0275|consen 481 DVIGL 485 (508)
T ss_pred ccccc
Confidence 44444
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.03 Score=59.06 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=125.9
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc---
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--- 241 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--- 241 (732)
++|.++|+.+ |...+--.....+-....-+.||-|+++++.... +.|-+.+..+- ..|..
T Consensus 282 ~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----------~sisIyEtpsf-----~lld~Ksl 344 (698)
T KOG2314|consen 282 QQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----------NSISIYETPSF-----MLLDKKSL 344 (698)
T ss_pred ceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEecc----------ceEEEEecCce-----eeeccccc
Confidence 5899999998 6543322111111223344689999998777654 23333332210 01100
Q ss_pred CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCC-ceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEe
Q 004735 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD 319 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~ 319 (732)
....+.+..|||-+.-|||..-...+.| .++-++.+. ++ +++...++. .....+.|-..|. |.|-.+
T Consensus 345 ki~gIr~FswsP~~~llAYwtpe~~~~p---arvtL~evP-s~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 345 KISGIRDFSWSPTSNLLAYWTPETNNIP---ARVTLMEVP-SKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred CCccccCcccCCCcceEEEEcccccCCc---ceEEEEecC-ccceeeecccee-------eeccEEEeccCCcEEEEEEE
Confidence 1123456889999999999874443332 346666665 33 332222322 2235678999999 776665
Q ss_pred ccC-----C---eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC--CEEEEEEEECC
Q 004735 320 RKN-----G---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDF 389 (732)
Q Consensus 320 ~~~-----g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g~~~ly~~~~~ 389 (732)
+.. | +..|++++-..=.+..+ +....+-...|.| .|+.+...+... .....|.+...
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP------------~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEP------------HGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeecc------------CCCeEEEEEccccccceeEEEeecC
Confidence 521 1 12455554322111211 2222334456766 677766666443 34567777655
Q ss_pred CCceEEecc-CCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 390 GHSLSLLDI-PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 390 ~~~~~~lt~-~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
.++.+.+.. +.-....+ .++.+++++.++-.+....|+.+|++-..
T Consensus 481 ~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 481 IKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred CCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 555444332 22334444 56777888877766677788888876433
No 255
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.75 E-value=0.00078 Score=63.07 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=82.6
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
..|++|...+|+|++...++.+.+..-+.....||++-+ +++ +..+-..-+..++..|+-|-|.++|+....
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln---- 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLN---- 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCC---ceeeehhccCCccccccccCcEEEEEccCc----
Confidence 468899999999998666776655432223467777544 566 666666666777899999999999986332
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCC---CCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFD---PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~---~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
....-|-+|.. +|.+.+++.+-.-. +.-..-+.......+|.|++..-. ...++++|+.+|+.-
T Consensus 180 -~~V~a~dyd~~-tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 180 -YEVDAYDYDCP-TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKIL 246 (310)
T ss_pred -eEEeeeecCCC-cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcEE
Confidence 12222555676 67655444322110 000022334455555555544433 245889999998753
No 256
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.75 E-value=0.0029 Score=62.73 Aligned_cols=219 Identities=10% Similarity=0.059 Sum_probs=115.6
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc-----HHHHHHHHCCCEEEEEcCCCCCCCChhhHHhh
Q 004735 472 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-----LSIQYWTSRGWAFVDVNYGGSTGYGREFRERL 546 (732)
Q Consensus 472 g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~-----~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~ 546 (732)
-..+++.++-.. ++++|++|-.|.-+-... ..|. ...+. ....|.++-+|.+|.......+
T Consensus 8 ~G~v~V~v~G~~--------~~~kp~ilT~HDvGlNh~-scF~~ff~~~~m~~-i~~~f~i~Hi~aPGqe~ga~~~---- 73 (283)
T PF03096_consen 8 YGSVHVTVQGDP--------KGNKPAILTYHDVGLNHK-SCFQGFFNFEDMQE-ILQNFCIYHIDAPGQEEGAATL---- 73 (283)
T ss_dssp TEEEEEEEESS----------TTS-EEEEE--TT--HH-HHCHHHHCSHHHHH-HHTTSEEEEEE-TTTSTT--------
T ss_pred ceEEEEEEEecC--------CCCCceEEEeccccccch-HHHHHHhcchhHHH-HhhceEEEEEeCCCCCCCcccc----
Confidence 446777777443 346899999998632211 1122 22333 3456999999999875432222
Q ss_pred ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhh---------
Q 004735 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE--------- 616 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~--------- 616 (732)
...+....++++.+.+..+.+...+ +.++-+|--+|+++-.+.+. +|+++.+.|++++...-..+...
T Consensus 74 p~~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~ 151 (283)
T PF03096_consen 74 PEGYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWL 151 (283)
T ss_dssp -TT-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH---
T ss_pred cccccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccc
Confidence 2222223466666666666665443 57999999999999998888 99999999999987643322111
Q ss_pred ------cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcc-ccCCCCCCCEEEEEeCCCC
Q 004735 617 ------THKFESRYIDNLVG----------------------SE-------KDYYEKSPI-NFVDKFSCPIILFQGLEDK 660 (732)
Q Consensus 617 ------~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~-~~~~~i~~P~Lii~G~~D~ 660 (732)
+.......+...++ ++ +.|..+..+ ...+...||+|++.|+..+
T Consensus 152 L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp 231 (283)
T PF03096_consen 152 LYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSP 231 (283)
T ss_dssp ----CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTST
T ss_pred ccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCc
Confidence 00001111222221 11 111111122 2245566999999999987
Q ss_pred ccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 661 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 661 ~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
. .+.+.++..+|... ..+++.++++|= ....++.....+.+.-|++
T Consensus 232 ~--~~~vv~~ns~Ldp~--~ttllkv~dcGg-lV~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 232 H--VDDVVEMNSKLDPT--KTTLLKVADCGG-LVLEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp T--HHHHHHHHHHS-CC--CEEEEEETT-TT--HHHH-HHHHHHHHHHHHH
T ss_pred c--hhhHHHHHhhcCcc--cceEEEecccCC-cccccCcHHHHHHHHHHHc
Confidence 5 56788888888654 679999999864 3344556666665555543
No 257
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.75 E-value=0.0081 Score=65.38 Aligned_cols=219 Identities=8% Similarity=-0.029 Sum_probs=128.3
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCC
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
...+.++.|||++.++++.+..+.+ .-.|-+.|+.+|+ . +... .......+|.+|++.++|++.+..+.
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e----~y~lr~kdL~tg~---~--~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~r- 198 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDE----QYTLRFKDLATGE---E--LPDEITNTSGSFAWAADGKTLFYTRLDENHR- 198 (682)
T ss_pred eeeeeeeeCCCCceEEEEEeccccc----EEEEEEEeccccc---c--cchhhcccccceEEecCCCeEEEEEEcCCCC-
Confidence 4557788999999999988776655 4788888999886 2 2111 12245678999999999999766553
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccC--CeEEEecccccc
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAE 346 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~--g~~~~l~~~~~~ 346 (732)
-.+|+...+. +.......+....+. ...-.+.=+...+ |+..... ....+++.++.+. ++.+.+.+...
T Consensus 199 --p~kv~~h~~g-t~~~~d~lvyeE~d~---~f~~~v~~s~s~~yi~i~~~~-~~tsE~~ll~a~~p~~~p~vv~pr~~- 270 (682)
T COG1770 199 --PDKVWRHRLG-TPGSSDELVYEEKDD---RFFLSVGRSRSEAYIVISLGS-HITSEVRLLDADDPEAEPKVVLPREN- 270 (682)
T ss_pred --cceEEEEecC-CCCCcceEEEEcCCC---cEEEEeeeccCCceEEEEcCC-CcceeEEEEecCCCCCceEEEEEcCC-
Confidence 3458887776 311122334444431 1222222334445 4444433 4455677776655 34555554321
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEEEC--CCCceEEeccCCC--ceEEeeEeCCEEEEEEeCCC
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDIPFT--DIDNITLGNDCLFVEGASGV 421 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~~~--~~~~~~~lt~~~~--~v~~~~~~~~~~~~~~~~~~ 421 (732)
+..+... +.++.+|+.++.+| ..+|+.... ....++.+..... .+..+..-++.+ +...+..
T Consensus 271 --g~eY~~e----------h~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~l-Vl~eR~~ 337 (682)
T COG1770 271 --GVEYSVE----------HGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHL-VLLERQE 337 (682)
T ss_pred --CcEEeee----------ecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEE-EEEeccc
Confidence 1122211 15678888888888 466777655 2223454444332 244443333444 4455567
Q ss_pred CCcEEEEEEcCCCcceeee
Q 004735 422 EPSSVAKVTLDDHKLKAVD 440 (732)
Q Consensus 422 ~~~~ly~~dl~~~~~~~lt 440 (732)
..+.+++.+..+++...|.
T Consensus 338 glp~v~v~~~~~~~~~~i~ 356 (682)
T COG1770 338 GLPRVVVRDRKTGEERGIA 356 (682)
T ss_pred CCceEEEEecCCCceeeEE
Confidence 7788999998888765554
No 258
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.74 E-value=0.026 Score=59.19 Aligned_cols=204 Identities=14% Similarity=0.112 Sum_probs=106.0
Q ss_pred HhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCC
Q 004735 84 VSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYK 163 (732)
Q Consensus 84 i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~ 163 (732)
+.+..+.+.++..+|++...|... -+|. |..++.++| ..-.+.+.. |...+..+..++..-+|+-.-
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~Sgs---yDG~--I~~W~~~~g-~~~~~~g~~-------h~nqI~~~~~~~~~~~~t~g~ 382 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGS---YDGH--INSWDSGSG-TSDRLAGKG-------HTNQIKGMAASESGELFTIGW 382 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeec---cCce--EEEEecCCc-ccccccccc-------ccceEEEEeecCCCcEEEEec
Confidence 444467777888887223333332 2354 344444443 333343322 222344444444223344445
Q ss_pred CCeEEEEeCCCCCCCcee--cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 164 DQRLYKHSIDSKDSSPLP--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~--lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
+..|.+.++.++ +-... +.-+. +--..+.++||..++.++. .+|.++.-.++ +..+.-
T Consensus 383 Dd~l~~~~~~~~-~~t~~~~~~lg~-----QP~~lav~~d~~~avv~~~----------~~iv~l~~~~~----~~~~~~ 442 (603)
T KOG0318|consen 383 DDTLRVISLKDN-GYTKSEVVKLGS-----QPKGLAVLSDGGTAVVACI----------SDIVLLQDQTK----VSSIPI 442 (603)
T ss_pred CCeEEEEecccC-cccccceeecCC-----CceeEEEcCCCCEEEEEec----------CcEEEEecCCc----ceeecc
Confidence 667888888542 21111 11111 1124567778776565555 45665542222 222221
Q ss_pred CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 242 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
+ -.....+.+||++.+|.-. ....|+++.+. +++..+........ +.+..+++||||..+...+.
T Consensus 443 ~-y~~s~vAv~~~~~~vaVGG--------~Dgkvhvysl~-g~~l~ee~~~~~h~----a~iT~vaySpd~~yla~~Da- 507 (603)
T KOG0318|consen 443 G-YESSAVAVSPDGSEVAVGG--------QDGKVHVYSLS-GDELKEEAKLLEHR----AAITDVAYSPDGAYLAAGDA- 507 (603)
T ss_pred c-cccceEEEcCCCCEEEEec--------ccceEEEEEec-CCcccceeeeeccc----CCceEEEECCCCcEEEEecc-
Confidence 1 1122457899999776543 23449999998 55544333333332 56788999999984445544
Q ss_pred CCeeeEEEEeccCCeE
Q 004735 322 NGFWNLHKWIESNNEV 337 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~ 337 (732)
.+ .+..+|.++.+.
T Consensus 508 ~r--kvv~yd~~s~~~ 521 (603)
T KOG0318|consen 508 SR--KVVLYDVASREV 521 (603)
T ss_pred CC--cEEEEEcccCce
Confidence 33 355667777655
No 259
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.74 E-value=0.00092 Score=69.29 Aligned_cols=237 Identities=12% Similarity=0.057 Sum_probs=118.0
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcc------cCCCCCcccccccccCCceeEEECCEEEEEe
Q 004735 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSD------ITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN 161 (732)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~------l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~ 161 (732)
..+..++|+| |+.+..+....+ ..|+-++-. +..+ .+.+-.+....+....-++|.+.....+.+.
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aq----akl~DRdG~---~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~ 287 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQ----AKLLDRDGF---EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC 287 (641)
T ss_pred cccceeeecCCCCeEEEEecCcc----eeEEccCCc---eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe
Confidence 3457889999 887777765332 122222110 1000 0111112233333334456766666666676
Q ss_pred CCCCeEEEEeCCCCCCCceecCCCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc
Q 004735 162 YKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV 240 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt 240 (732)
..++.|-+|++.....+.+.+.+.. +.........+|+|||++|+.-+.+. .|-+++..+-... +.-..
T Consensus 288 s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~-p~~~v 357 (641)
T KOG0772|consen 288 SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVR-PVMKV 357 (641)
T ss_pred cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccc-cceEe
Confidence 6777777777753102233332221 11123346678999999987776643 4444554321100 11111
Q ss_pred ----cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEE
Q 004735 241 ----SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 316 (732)
Q Consensus 241 ----~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~ 316 (732)
.+..-+....||+||++|+--+. ...|-++|+..-.+. +....+-... ..-....||||.+|++
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~--------D~tLKvWDLrq~kkp--L~~~tgL~t~--~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGF--------DDTLKVWDLRQFKKP--LNVRTGLPTP--FPGTDCCFSPDDKLIL 425 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccC--------CCceeeeeccccccc--hhhhcCCCcc--CCCCccccCCCceEEE
Confidence 11123456789999999874442 234778888732222 2222221100 2235788999998766
Q ss_pred EEec---cCCeeeEEEEeccCCe-EEEecccccccCCCceee
Q 004735 317 VTDR---KNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 317 ~~~~---~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~ 354 (732)
+... +.....|+.+|..+=+ +..|.-....+..-.|.+
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred ecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 5432 1223468888876532 223322223333445665
No 260
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.017 Score=56.64 Aligned_cols=220 Identities=14% Similarity=0.152 Sum_probs=117.0
Q ss_pred CcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccC---CceeEE
Q 004735 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYG---GGAFRI 152 (732)
Q Consensus 77 ~~~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g---~~~~~~ 152 (732)
.||.+..+-+....+.++.++. |+.+.-.. .++.+.||..++-.. +..+ ..|.++ +|+ ...|++
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~-~eHr------~~R~nv-e~dhpT~V~Fap 142 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFEN-KEHR------CIRQNV-EYDHPTRVVFAP 142 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhh-hhhh------Hhhccc-cCCCceEEEECC
Confidence 3677777777788889999997 66665544 257777777654311 1111 223332 222 123444
Q ss_pred ECCEEEEEeCCCCeEEEEeCCC--CCCCceecCCCC--CCCCeE---eeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDS--KDSSPLPITPDY--GEPLVS---YADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~--~~~~~~~lt~~~--~~~~~~---~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+-..+++.-...+.|+++-+.. .++-+-..+.-+ ..+..+ .-+.-.. ++..++..+... +.|.+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~d--------t~i~l 213 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLD--------TKICL 213 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCC--------CcEEE
Confidence 4445655554555777777642 101111111110 000000 1111122 333323333322 68899
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee---EEecCCCCCcccc
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVES 302 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~---~~~~~~~~~~~~~ 302 (732)
+++.|.- ...+..........+.||||+.|+...+.. ...+|-.-...+|+.+++ -.+.+.. ..
T Consensus 214 w~lkGq~---L~~idtnq~~n~~aavSP~GRFia~~gFTp------DVkVwE~~f~kdG~fqev~rvf~LkGH~----sa 280 (420)
T KOG2096|consen 214 WDLKGQL---LQSIDTNQSSNYDAAVSPDGRFIAVSGFTP------DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SA 280 (420)
T ss_pred EecCCce---eeeeccccccccceeeCCCCcEEEEecCCC------CceEEEEEeccCcchhhhhhhheeccch----hh
Confidence 9998543 333433333344678999999998765332 223443333446765443 3455554 67
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEEec
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~ 332 (732)
+...+||++.+ ++- ... .|.|+||-.|.
T Consensus 281 V~~~aFsn~S~r~vt-vSk-DG~wriwdtdV 309 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVT-VSK-DGKWRIWDTDV 309 (420)
T ss_pred eeeeeeCCCcceeEE-Eec-CCcEEEeeccc
Confidence 78899999998 554 444 68999986654
No 261
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.70 E-value=0.011 Score=59.95 Aligned_cols=209 Identities=12% Similarity=0.073 Sum_probs=111.6
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce-eccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~-~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
+...+|.||+++++. .-.+ ...+-++|++.++ ...-..-+++. ..| +.++ + .+-+. . .
T Consensus 98 ~~~~ls~dgk~~~V~-N~TP------a~SVtVVDl~~~k---vv~ei~~PGC~~iyP-~~~~-~-F~~lC--~------D 156 (342)
T PF06433_consen 98 NMFALSADGKFLYVQ-NFTP------ATSVTVVDLAAKK---VVGEIDTPGCWLIYP-SGNR-G-FSMLC--G------D 156 (342)
T ss_dssp GGEEE-TTSSEEEEE-EESS------SEEEEEEETTTTE---EEEEEEGTSEEEEEE-EETT-E-EEEEE--T------T
T ss_pred cceEEccCCcEEEEE-ccCC------CCeEEEEECCCCc---eeeeecCCCEEEEEe-cCCC-c-eEEEe--c------C
Confidence 556899999985544 3222 4789999999887 43322223322 233 1222 2 22222 1 2
Q ss_pred cEEEEEEecCCCceeeeE--EecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccc---cc
Q 004735 273 AELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AE 346 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~--~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~---~~ 346 (732)
..+..+.++.+|+..... .+...+ + .-...+.++.++. ++|.+-. .++|.+++.+...+..-+-+ ..
T Consensus 157 Gsl~~v~Ld~~Gk~~~~~t~~F~~~~-d--p~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 157 GSLLTVTLDADGKEAQKSTKVFDPDD-D--PLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp SCEEEEEETSTSSEEEEEEEESSTTT-S---B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HH
T ss_pred CceEEEEECCCCCEeEeeccccCCCC-c--ccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCcc
Confidence 236667777667654222 221111 1 3345667766655 8887765 35888888776654332110 01
Q ss_pred cCCCceeecccc-eeeeeecCCCCEEEEEEEE-------CCEEEEEEEECCCCce-EEeccCCCceEEe--eEeCCEEEE
Q 004735 347 FSRPLWVFGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFV 415 (732)
Q Consensus 347 ~~~~~w~~~~~~-~~~~~~~~~~~~l~~~s~~-------~g~~~ly~~~~~~~~~-~~lt~~~~~v~~~--~~~~~~~~~ 415 (732)
.....|-|+... +++.+ ..++||+.-.. ++...||.+|+++++. .++.... .+.++ +.+++-++|
T Consensus 230 e~~~~WrPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLY 305 (342)
T ss_dssp HHHTTEEE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEE
T ss_pred ccccCcCCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEE
Confidence 123578886644 44433 56677776542 3467899999999874 4454322 23333 445555555
Q ss_pred EEeCCCCCcEEEEEEcCCCcc
Q 004735 416 EGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 416 ~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+. ....|+++|..+|+.
T Consensus 306 ~~~~--~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 306 ALSA--GDGTLDVYDAATGKL 324 (342)
T ss_dssp EEET--TTTEEEEEETTT--E
T ss_pred EEcC--CCCeEEEEeCcCCcE
Confidence 5443 235799999999875
No 262
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.68 E-value=0.0048 Score=60.32 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=132.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccC---Cc-ccHHHHHHHHCCCEEEEEcCCCCC
Q 004735 461 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR---GI-LNLSIQYWTSRGWAFVDVNYGGST 536 (732)
Q Consensus 461 ~~~i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~---~~-~~~~~~~l~~~G~~v~~~d~rG~~ 536 (732)
-++..+++. . ..++..++--. ++++|++|-.|.-+..... .. ....++.+.++ |.|+-+|.+|.-
T Consensus 22 ~~e~~V~T~-~-G~v~V~V~Gd~--------~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe 90 (326)
T KOG2931|consen 22 CQEHDVETA-H-GVVHVTVYGDP--------KGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQE 90 (326)
T ss_pred ceeeeeccc-c-ccEEEEEecCC--------CCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccc
Confidence 356677775 3 56777777543 2367889999986333221 11 12345666777 999999998753
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHh
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 615 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~ 615 (732)
.-.. ....++..-..+++.+.+..+++... -+-|.-+|--+|+++-.+.+. ||+++.+.|++++...-..+..
T Consensus 91 ~gAp----~~p~~y~yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwie 164 (326)
T KOG2931|consen 91 DGAP----SFPEGYPYPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIE 164 (326)
T ss_pred cCCc----cCCCCCCCCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHH
Confidence 2211 22233333447788888887777643 457889999999999998888 9999999999987543221111
Q ss_pred ---h------------cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcccc-----CCC
Q 004735 616 ---E------------THKFESRYIDNLVG----------------------SE-------KDYYEKSPINF-----VDK 646 (732)
Q Consensus 616 ---~------------~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~~~-----~~~ 646 (732)
. +.......+...++ ++ +.|..+..+.. ...
T Consensus 165 w~~~K~~s~~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~t 244 (326)
T KOG2931|consen 165 WAYNKVSSNLLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTT 244 (326)
T ss_pred HHHHHHHHHHHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCcc
Confidence 0 00000111111221 10 11111111111 114
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVF 709 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~f 709 (732)
++||+|++.|.+-+.+ +...++..+|... ..+++.+.++|- ....++.....+.+.=|
T Consensus 245 lkc~vllvvGd~Sp~~--~~vv~~n~~Ldp~--~ttllk~~d~g~-l~~e~qP~kl~ea~~~F 302 (326)
T KOG2931|consen 245 LKCPVLLVVGDNSPHV--SAVVECNSKLDPT--YTTLLKMADCGG-LVQEEQPGKLAEAFKYF 302 (326)
T ss_pred ccccEEEEecCCCchh--hhhhhhhcccCcc--cceEEEEcccCC-cccccCchHHHHHHHHH
Confidence 5699999999998653 4566666666543 568888888875 33434555555444433
No 263
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.66 E-value=5.6e-05 Score=78.22 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCCCCc-cCCcccHHHHHHHH---CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHh
Q 004735 492 EEKPPLLVKSHGGPTSE-ARGILNLSIQYWTS---RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVG 567 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~-~~~~~~~~~~~l~~---~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 567 (732)
+...|++|++||..... .......+...+.. .++.|+++|+..... ..|..+.... ...-..+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~n~--~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVANT--RLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhhhH--HHHHHHHHHHHHHHHh
Confidence 34679999999985444 23333344444444 589999999852111 1222221100 0112345556777776
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecCcC
Q 004735 568 SGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVA 608 (732)
Q Consensus 568 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~~~ 608 (732)
...++.++|.|+|||+||++|..+.. ... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 65688999999999999999999988 444 788888887754
No 264
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.66 E-value=0.037 Score=59.73 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=112.0
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
...++++++.. .++.|+.+|.++ |+..=-.... ......|... + ..|++ ... ...|+.+|.++
T Consensus 117 ~v~~~~v~v~~-~~g~l~ald~~t--G~~~W~~~~~---~~~~ssP~v~-~-~~v~v-~~~--------~g~l~ald~~t 179 (394)
T PRK11138 117 TVAGGKVYIGS-EKGQVYALNAED--GEVAWQTKVA---GEALSRPVVS-D-GLVLV-HTS--------NGMLQALNESD 179 (394)
T ss_pred EEECCEEEEEc-CCCEEEEEECCC--CCCcccccCC---CceecCCEEE-C-CEEEE-ECC--------CCEEEEEEccC
Confidence 44567776653 567899999987 5432111111 1122334443 3 34443 321 25899999999
Q ss_pred CCccccE-Ecc-cCCCc----eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc----
Q 004735 231 QNIQEPK-VLV-SGSDF----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV---- 300 (732)
Q Consensus 231 ~~~~~~~-~lt-~~~~~----~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~---- 300 (732)
|+ .. ... ..+.. ...|... +..+++.. ....++.+|.+ +|+..+...+........
T Consensus 180 G~---~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~--------~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 180 GA---VKWTVNLDVPSLTLRGESAPATA--FGGAIVGG--------DNGRVSAVLME-QGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CC---EeeeecCCCCcccccCCCCCEEE--CCEEEEEc--------CCCEEEEEEcc-CChhhheeccccCCCccchhcc
Confidence 87 32 111 11111 1234433 23454432 23458888888 787644332211100000
Q ss_pred -ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 301 -ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 301 -~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
.....|... |+.+|+.+.. ..|+.+|+.+|+..--.+. ..+. .... .++.+|+... +
T Consensus 246 ~~~~~sP~v~-~~~vy~~~~~----g~l~ald~~tG~~~W~~~~----~~~~------~~~~-----~~~~vy~~~~-~- 303 (394)
T PRK11138 246 VDVDTTPVVV-GGVVYALAYN----GNLVALDLRSGQIVWKREY----GSVN------DFAV-----DGGRIYLVDQ-N- 303 (394)
T ss_pred cccCCCcEEE-CCEEEEEEcC----CeEEEEECCCCCEEEeecC----CCcc------CcEE-----ECCEEEEEcC-C-
Confidence 001233332 4445554432 3689999998865321111 1100 0111 5667777653 2
Q ss_pred EEEEEEEECCCCceEEecc--CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 380 RSYLGILDDFGHSLSLLDI--PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~~lt~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+|+.++.++|+..--.. ...........++.++ +.... ..|+.+|.++|+.
T Consensus 304 -g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~-v~~~~---G~l~~ld~~tG~~ 357 (394)
T PRK11138 304 -DRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLV-VGDSE---GYLHWINREDGRF 357 (394)
T ss_pred -CeEEEEECCCCcEEEcccccCCCcccCCEEECCEEE-EEeCC---CEEEEEECCCCCE
Confidence 468999998886532111 1122222233355554 43322 4699999988874
No 265
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.64 E-value=0.00014 Score=70.12 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=53.1
Q ss_pred EEEEcCCCCCccCCcccHHHHHHHHCCCE---EEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCC
Q 004735 498 LVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 574 (732)
Q Consensus 498 vl~~HGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 574 (732)
||++||.. ......|..+++.|.++||. |++++|-.... ........ .......++.+.|+.+++.. ..
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~T--Ga- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAYT--GA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHHH--T--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHhh--CC-
Confidence 78999973 33556788899999999999 89999943221 11111111 01122466777777777653 35
Q ss_pred cEEEEEcChHHHHHHHHHh
Q 004735 575 RLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~ 593 (732)
||-|+|||+||.++-+++.
T Consensus 76 kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp -EEEEEETCHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHH
Confidence 9999999999999988876
No 266
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.64 E-value=0.014 Score=58.28 Aligned_cols=219 Identities=13% Similarity=0.052 Sum_probs=120.8
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.+++....++.+|.+.+.. +...++-.+ +..+.....|.|||++++...++ ..|.++++.++..
T Consensus 161 ~illAG~~DGsvWmw~ip~--~~~~kv~~G---h~~~ct~G~f~pdGKr~~tgy~d---------gti~~Wn~ktg~p-- 224 (399)
T KOG0296|consen 161 HILLAGSTDGSVWMWQIPS--QALCKVMSG---HNSPCTCGEFIPDGKRILTGYDD---------GTIIVWNPKTGQP-- 224 (399)
T ss_pred cEEEeecCCCcEEEEECCC--cceeeEecC---CCCCcccccccCCCceEEEEecC---------ceEEEEecCCCce--
Confidence 5666666788999999986 444444444 24555666799999997665442 5788999999871
Q ss_pred cEEcccCCC-ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE------ecCCCCCccccCcCcee
Q 004735 236 PKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC------VAGFDPTIVESPTEPKW 308 (732)
Q Consensus 236 ~~~lt~~~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~------~~~~~~~~~~~~~~~~w 308 (732)
...++.... ...-..++-+|..+ +.. +. ....++.... +|++..... .+..+ .-..++....|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~-~~g-~~------e~~~~~~~~~-sgKVv~~~n~~~~~l~~~~e-~~~esve~~~~ 294 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTL-TKG-NS------EGVACGVNNG-SGKVVNCNNGTVPELKPSQE-ELDESVESIPS 294 (399)
T ss_pred eEEecccccCcCCcccccccccee-Eec-cC------CccEEEEccc-cceEEEecCCCCccccccch-hhhhhhhhccc
Confidence 233332221 11122445566543 332 21 2224555544 555421111 11111 10133444555
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|.+=.|...... . ..|.++|.+..+.|.+...+..+....|. + ...++++.-+|. |+..|.
T Consensus 295 ss~lpL~A~G~v-d--G~i~iyD~a~~~~R~~c~he~~V~~l~w~-------------~-t~~l~t~c~~g~--v~~wDa 355 (399)
T KOG0296|consen 295 SSKLPLAACGSV-D--GTIAIYDLAASTLRHICEHEDGVTKLKWL-------------N-TDYLLTACANGK--VRQWDA 355 (399)
T ss_pred ccccchhhcccc-c--ceEEEEecccchhheeccCCCceEEEEEc-------------C-cchheeeccCce--EEeeec
Confidence 544223333322 2 35777888888888888665555555554 3 334445555554 555577
Q ss_pred CCCceE-EeccCCCceEEe-eEeCCEEEEEEeC
Q 004735 389 FGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 389 ~~~~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
.+|++. ..+.....|..+ ...++++++..+.
T Consensus 356 RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred cccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 788765 455566777777 4556666655543
No 267
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.63 E-value=0.00069 Score=73.83 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=87.1
Q ss_pred EECCEEEEEeCCC-C--eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 152 IFGDTVIFSNYKD-Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 152 ~~~~~i~f~~~~~-~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
+++...+|..... + +||..|-. .|.++-.+. -....-..|+|+..+++--+.+ ..+-.+|.
T Consensus 501 F~P~GyYFatas~D~tArLWs~d~~----~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWDv 564 (707)
T KOG0263|consen 501 FAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWDV 564 (707)
T ss_pred ecCCceEEEecCCCceeeeeecccC----Cchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEEc
Confidence 3344566654432 2 67777653 344444331 1122336799999875443322 35555688
Q ss_pred CCCCccccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 229 NGQNIQEPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 229 ~~~~~~~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
.+|. ..++..| ...+...++||+|++|+-.+ . ...|.++|+. +|+. +..+.+.. ..+..+.
T Consensus 565 ~~G~---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--e------d~~I~iWDl~-~~~~--v~~l~~Ht----~ti~Sls 626 (707)
T KOG0263|consen 565 STGN---SVRIFTGHKGPVTALAFSPCGRYLASGD--E------DGLIKIWDLA-NGSL--VKQLKGHT----GTIYSLS 626 (707)
T ss_pred CCCc---EEEEecCCCCceEEEEEcCCCceEeecc--c------CCcEEEEEcC-CCcc--hhhhhccc----CceeEEE
Confidence 8887 6666544 45667789999999997544 2 3348999998 7765 45555554 6788999
Q ss_pred eCCCCcEEEEEeccCCeeeEE
Q 004735 308 WSSKGELFFVTDRKNGFWNLH 328 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~ 328 (732)
||.||.++.+... ...-+||
T Consensus 627 FS~dg~vLasgg~-DnsV~lW 646 (707)
T KOG0263|consen 627 FSRDGNVLASGGA-DNSVRLW 646 (707)
T ss_pred EecCCCEEEecCC-CCeEEEE
Confidence 9999985544332 3333444
No 268
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.62 E-value=0.0033 Score=59.92 Aligned_cols=182 Identities=12% Similarity=0.097 Sum_probs=105.8
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
.-+..|+|...-++++.... ..|.++|...++ ...-+....-.....|||||+++++...+
T Consensus 67 vdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k---~~~~i~~~~eni~i~wsp~g~~~~~~~kd-------- 127 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGK---CTARIETKGENINITWSPDGEYIAVGNKD-------- 127 (313)
T ss_pred hhhheeCCCCCcceEEecCC--------ceEEEEEeccCc---EEEEeeccCcceEEEEcCCCCEEEEecCc--------
Confidence 45577888766556654422 477888888877 55554444334567899999999987622
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
..|-.+|.. +-++.... ... .......|.-++.++|.++. .|.-+|..+. .++++...+. .|.
T Consensus 128 D~it~id~r-~~~~~~~~---~~~----~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp----sLkpv~si~A---H~s- 190 (313)
T KOG1407|consen 128 DRITFIDAR-TYKIVNEE---QFK----FEVNEISWNNSNDLFFLTNG-LGCVEILSYP----SLKPVQSIKA---HPS- 190 (313)
T ss_pred ccEEEEEec-ccceeehh---ccc----ceeeeeeecCCCCEEEEecC-CceEEEEecc----cccccccccc---CCc-
Confidence 236677765 22221111 111 33457788866668888876 7877777664 2333332221 110
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC-CceEEeccCCCceEEee-EeCCEEEEEEe
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNIT-LGNDCLFVEGA 418 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~-~~~~~lt~~~~~v~~~~-~~~~~~~~~~~ 418 (732)
.--.+.|.| +|+++...+ .+....|| |++. --+|.++.-+|.|..++ +-+++++..++
T Consensus 191 --nCicI~f~p---~GryfA~Gs-ADAlvSLW--D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 191 --NCICIEFDP---DGRYFATGS-ADALVSLW--DVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred --ceEEEEECC---CCceEeecc-ccceeecc--ChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 111223443 777766554 34555566 4332 23577888899999884 44566655444
No 269
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.62 E-value=0.049 Score=64.60 Aligned_cols=140 Identities=6% Similarity=0.025 Sum_probs=81.2
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCC-ceecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
...+++...++.|.++|+.+ +. ...+... ........|+| +|+.|+.... + ..|.++|+.++.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~-D--------g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR--SQLVTEMKEH----EKRVWSIDYSSADPTLLASGSD-D--------GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC--CeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcC-C--------CEEEEEECCCCc
Confidence 34556666788899999986 43 2333332 33456778997 6776444433 2 578888988765
Q ss_pred ccccEEcccCCCceecccc-CCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~-SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 311 (732)
...............| +++|..|+..+ ....|+++|+. +++. ....+.+.. ..+..+.|. |
T Consensus 610 ---~~~~~~~~~~v~~v~~~~~~g~~latgs--------~dg~I~iwD~~-~~~~-~~~~~~~h~----~~V~~v~f~-~ 671 (793)
T PLN00181 610 ---SIGTIKTKANICCVQFPSESGRSLAFGS--------ADHKVYYYDLR-NPKL-PLCTMIGHS----KTVSYVRFV-D 671 (793)
T ss_pred ---EEEEEecCCCeEEEEEeCCCCCEEEEEe--------CCCeEEEEECC-CCCc-cceEecCCC----CCEEEEEEe-C
Confidence 3222222223344556 56898887765 23459999987 4432 123334443 456678886 6
Q ss_pred CcEEEEEeccCCeeeEE
Q 004735 312 GELFFVTDRKNGFWNLH 328 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~ 328 (732)
+..+++... .+.-.||
T Consensus 672 ~~~lvs~s~-D~~ikiW 687 (793)
T PLN00181 672 SSTLVSSST-DNTLKLW 687 (793)
T ss_pred CCEEEEEEC-CCEEEEE
Confidence 664444443 4554444
No 270
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.60 E-value=0.0058 Score=60.08 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=57.5
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
.++...+||+|...+.+.++ .=-..||++|+..-+...+......+....|.|+ .-++++. .|.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~------------~prL~vc---tg~ 382 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG------------RPRLVVC---TGK 382 (447)
T ss_pred cccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhhhhhccceeEEEeCCC------------CceEEEE---cCC
Confidence 56777899999864444444 3345689999988776655544444455667763 2234433 255
Q ss_pred EEEEEEECCCCceEEeccCCCceEEe
Q 004735 381 SYLGILDDFGHSLSLLDIPFTDIDNI 406 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~~~~v~~~ 406 (732)
.+||...+.+-....+......+..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l 408 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKL 408 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeE
Confidence 78999988876656666555666666
No 271
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.0079 Score=58.27 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=89.7
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+..++|.+...+-.+++|.++. .++..++...+ .-.|+...|||||++|+.+..+. +.. ...|=++|...+
T Consensus 80 ~ravafARrPGtf~~vfD~~~~-~~pv~~~s~~~--RHfyGHGvfs~dG~~LYATEndf-d~~---rGViGvYd~r~~-- 150 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPNGA-QEPVTLVSQEG--RHFYGHGVFSPDGRLLYATENDF-DPN---RGVIGVYDAREG-- 150 (366)
T ss_pred cceEEEEecCCceEEEECCCCC-cCcEEEecccC--ceeecccccCCCCcEEEeecCCC-CCC---CceEEEEecccc--
Confidence 3367777766667788999863 44555544321 23457789999999866654433 221 356666776532
Q ss_pred cccEEcccCCCcee---ccccCCCCCeEEEEec---cCCCC---CC----CccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 234 QEPKVLVSGSDFYA---FPRMDPRGERMAWIEW---HHPNM---PW----DKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 234 ~~~~~lt~~~~~~~---~p~~SPDG~~la~~~~---~~~~~---~~----~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
-.++.+-+.+-. ...|.+||+.|+.... .++.. +. -...|.++|.. +|++-+...++.....
T Consensus 151 --fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~~l~~-- 225 (366)
T COG3490 151 --FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPASLRQ-- 225 (366)
T ss_pred --cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc-ccchhhhccCchhhhh--
Confidence 233332222222 3479999999987653 22110 00 12346677765 6776555555533212
Q ss_pred ccCcCceeCCCCcEEEEEec
Q 004735 301 ESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~ 320 (732)
.++..+...+||+++|-.+.
T Consensus 226 lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cceeeeeeCCCCcEEEEEEe
Confidence 56777888999998776665
No 272
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.57 E-value=0.00041 Score=67.91 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHH--------HHCCCEEEEEcCCCCCC--CChhhHHhhccCCCcccHHHHHHHHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYW--------TSRGWAFVDVNYGGSTG--YGREFRERLLGRWGIVDVNDCCSCATF 564 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l--------~~~G~~v~~~d~rG~~g--~g~~~~~~~~~~~~~~~~~D~~~~i~~ 564 (732)
...|||+||..++. ..++.....+ ....+.++.+||..... +|.... ...+-+..+++.
T Consensus 4 g~pVlFIhG~~Gs~--~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~~i~~ 72 (225)
T PF07819_consen 4 GIPVLFIHGNAGSY--KQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAEAIKY 72 (225)
T ss_pred CCEEEEECcCCCCH--hHHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHH---------HHHHHHHHHHHH
Confidence 36799999964332 2222222222 12257899999864221 121111 113445566666
Q ss_pred HHhcC---CCCCCcEEEEEcChHHHHHHHHHhC----CCcceEEEeecC
Q 004735 565 LVGSG---KADEKRLCITGGSAGGYTTLAALAF----RDTFKAGASLYG 606 (732)
Q Consensus 565 l~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~----p~~~~a~v~~~~ 606 (732)
+.+.. ...+++|.|+||||||.++-.++.. ++.++.+|.++.
T Consensus 73 i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~t 121 (225)
T PF07819_consen 73 ILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGT 121 (225)
T ss_pred HHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcC
Confidence 66553 4467899999999999999888762 346777776653
No 273
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.55 E-value=0.00087 Score=71.01 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=65.6
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
..|-++|+.+++. ...|....+.+.+.+|||||++||-+. ....|.|+... .++. .+....+.. +
T Consensus 700 ~Ti~lWDl~~~~~--~~~l~gHtdqIf~~AWSpdGr~~AtVc--------KDg~~rVy~Pr-s~e~-pv~Eg~gpv-g-- 764 (1012)
T KOG1445|consen 700 STIELWDLANAKL--YSRLVGHTDQIFGIAWSPDGRRIATVC--------KDGTLRVYEPR-SREQ-PVYEGKGPV-G-- 764 (1012)
T ss_pred ceeeeeehhhhhh--hheeccCcCceeEEEECCCCcceeeee--------cCceEEEeCCC-CCCC-ccccCCCCc-c--
Confidence 5777889988651 334555567778899999999999887 34568888876 4432 122111111 1
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
..-.++.|.-||+ ++++.-++....+|-.+|.++-..+.|
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl 805 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPL 805 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcc
Confidence 2345788999999 555544434455666666655433333
No 274
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.55 E-value=0.003 Score=65.28 Aligned_cols=228 Identities=10% Similarity=0.041 Sum_probs=132.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc---eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+-+|.- ..+-|-++|+... +.. .+|..- +.+.......++|||+.|+.-.+ ...|-++|++.-.
T Consensus 432 rhVyTg-GkgcVKVWdis~p-g~k~PvsqLdcl--~rdnyiRSckL~pdgrtLivGGe---------astlsiWDLAapT 498 (705)
T KOG0639|consen 432 RHVYTG-GKGCVKVWDISQP-GNKSPVSQLDCL--NRDNYIRSCKLLPDGRTLIVGGE---------ASTLSIWDLAAPT 498 (705)
T ss_pred ceeEec-CCCeEEEeeccCC-CCCCcccccccc--CcccceeeeEecCCCceEEeccc---------cceeeeeeccCCC
Confidence 445553 3456778888642 221 222221 12344566779999999766433 2678888988754
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
.+--.+|+...-.....+.|||.+ ++|....+.+ |.|+|+. +..+ ++.+.+.. .+..-+..++||
T Consensus 499 prikaeltssapaCyALa~spDak-vcFsccsdGn-------I~vwDLh-nq~~--VrqfqGht----DGascIdis~dG 563 (705)
T KOG0639|consen 499 PRIKAELTSSAPACYALAISPDAK-VCFSCCSDGN-------IAVWDLH-NQTL--VRQFQGHT----DGASCIDISKDG 563 (705)
T ss_pred cchhhhcCCcchhhhhhhcCCccc-eeeeeccCCc-------EEEEEcc-ccee--eecccCCC----CCceeEEecCCC
Confidence 100123444333334578999976 8888755433 8999998 5544 66677664 566778889999
Q ss_pred cEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
.-+|+..- ...+..+|+..+. ++. +.+|..-.++.+.. | .+.++++.-+ + .+++++...+.+
T Consensus 564 tklWTGGl---DntvRcWDlregr--qlq--qhdF~SQIfSLg~c-----P---~~dWlavGMe-n--s~vevlh~skp~ 625 (705)
T KOG0639|consen 564 TKLWTGGL---DNTVRCWDLREGR--QLQ--QHDFSSQIFSLGYC-----P---TGDWLAVGME-N--SNVEVLHTSKPE 625 (705)
T ss_pred ceeecCCC---ccceeehhhhhhh--hhh--hhhhhhhheecccC-----C---Cccceeeecc-c--CcEEEEecCCcc
Confidence 84444322 2346667776543 332 22344444443322 1 5566665443 2 456677777777
Q ss_pred eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 393 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 393 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.-+|...+..|-.+ ...-+++ |+..+.++....|+..
T Consensus 626 kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTP 663 (705)
T ss_pred ceeecccccEEEEEEecccCce-eeecCchhhhhhccCc
Confidence 77888887777777 3444444 4444556566666654
No 275
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.54 E-value=0.00051 Score=77.42 Aligned_cols=98 Identities=11% Similarity=0.205 Sum_probs=65.9
Q ss_pred CEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc-ccCCCceeccccCCCCCeEEE-EeccCCCCCCCccEEEEEEe
Q 004735 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYI 280 (732)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-t~~~~~~~~p~~SPDG~~la~-~~~~~~~~~~~~~~l~v~d~ 280 (732)
.+|+|+.+.. .+|.++|.++.. ++.+ +........|+|||||++||| ++...-. ....||+.++
T Consensus 319 tkiAfv~~~~--------~~L~~~D~dG~n---~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~---g~s~vYv~~L 384 (912)
T TIGR02171 319 AKLAFRNDVT--------GNLAYIDYTKGA---SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLP---GKSSVYVRNL 384 (912)
T ss_pred eeEEEEEcCC--------CeEEEEecCCCC---ceEEEecCCCceecCcCCCCCCEEEEEEeecCCC---CCceEEEEeh
Confidence 3577876522 489999999988 8878 777777889999999999999 6543311 2566999999
Q ss_pred cCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEec
Q 004735 281 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDR 320 (732)
Q Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~ 320 (732)
..+|. ..+++-.+ . ..+.+.+...+|. |+|+++.
T Consensus 385 ~t~~~-~~vkl~ve-~----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 385 NASGS-GLVKLPVE-N----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred hccCC-CceEeecc-c----ccccceEecCCCCeEEEEEcCC
Confidence 84442 21232222 2 3344444467776 8888765
No 276
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.00025 Score=62.79 Aligned_cols=118 Identities=16% Similarity=0.281 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhh
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYY 636 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (732)
..+.-.|++++- -+.+..+-|.||||+.++...- ||+++..+|+.+|++|.+.+... ..++...|
T Consensus 87 H~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~-----------yyddDv~y- 152 (227)
T COG4947 87 HRAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGG-----------YYDDDVYY- 152 (227)
T ss_pred HHHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccc-----------cccCceee-
Confidence 344455777662 2467889999999999998887 99999999999999998754332 22222223
Q ss_pred hcCccccCCCCCC----------CEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 637 EKSPINFVDKFSC----------PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 637 ~~sp~~~~~~i~~----------P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
.+|..++..+.+ .+.+.+|.+|+..+ +.+.+-+.|..+.++..+.+..+-.|.
T Consensus 153 -nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 153 -NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred -cChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhcccccc
Confidence 667666665543 46777888887754 456677788877777666666665564
No 277
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.069 Score=57.81 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=95.5
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
+.+......-+.||||++|++..-. ...||....+ +.++... ..... .-........++-|+. +++.+
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~-------~~~iy~L~~~--~~vk~~~-v~~~~-~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVS-------RTKIYRLQPD--PNVKVIN-VDDVP-LALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeecc-------ceEEEEeccC--cceeEEE-eccch-hhhccceeeEEEecCceEEEEe
Confidence 3455666777899999999987622 2335555443 4332222 22111 0003445677888888 66555
Q ss_pred eccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec-
Q 004735 319 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD- 397 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt- 397 (732)
.. ...|..+++++...+.+...... .-.+..+.+..++ +|++|+..+ ....|+++++.+++.+.|.
T Consensus 448 ~~---~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~Ss---dG~yiaa~~---t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 448 KN---IFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSS---DGNYIAAIS---TRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred cc---cceeEEEEecCcchhhhhccccc----cCCCcceeEEEcC---CCCEEEEEe---ccceEEEEEcccceeecchh
Confidence 33 34566666666655544422111 1112333444444 888888776 4467888899999888776
Q ss_pred cCCCceEEe--e-EeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 398 IPFTDIDNI--T-LGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 398 ~~~~~v~~~--~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
..+..++.. . ...+++++..++ .++|.+|++..+
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence 334555555 2 233455555543 479999984433
No 278
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.48 E-value=0.018 Score=60.07 Aligned_cols=241 Identities=13% Similarity=0.058 Sum_probs=123.3
Q ss_pred EEeCCCCeEEEEeCCCCC---CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 159 FSNYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 159 f~~~~~~~l~~~d~~~~~---~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++...+..+-.+|+++-+ ..-++|.+.+ .......+|||.|.+|+++... .+.-++|.+|.+
T Consensus 183 ~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~--- 247 (641)
T KOG0772|consen 183 VSGSLDYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFE--- 247 (641)
T ss_pred eeccccceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCce---
Confidence 344445577888887511 1246676652 3445778899999999988763 466677777654
Q ss_pred cEEcccCC----------Cce---eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-Cccc
Q 004735 236 PKVLVSGS----------DFY---AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVE 301 (732)
Q Consensus 236 ~~~lt~~~----------~~~---~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-~~~~ 301 (732)
......|. ++. ..-+|.|+.+..+.....+ ..|.++|++ +-+ .++.++..... ....
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D-------gtlRiWdv~-~~k-~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD-------GTLRIWDVN-NTK-SQLQVIKTKPAGGKRV 318 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC-------CcEEEEecC-Cch-hheeEEeeccCCCccc
Confidence 22222221 222 2348999999886555332 337777776 322 12222221110 1014
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
.+....|++||+++..... .|..++|-..-.+-...-.... +...+ .++..+.|+. +|+.|+ +...++.-
T Consensus 319 ~~tsC~~nrdg~~iAagc~-DGSIQ~W~~~~~~v~p~~~vk~-AH~~g----~~Itsi~FS~---dg~~Ll-SRg~D~tL 388 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCL-DGSIQIWDKGSRTVRPVMKVKD-AHLPG----QDITSISFSY---DGNYLL-SRGFDDTL 388 (641)
T ss_pred CceeeecCCCcchhhhccc-CCceeeeecCCcccccceEeee-ccCCC----CceeEEEecc---ccchhh-hccCCCce
Confidence 5667889999995444444 5777777542111111111111 11000 1234455654 666544 44445556
Q ss_pred EEEEEECCCCceE---EeccCCCceEEeeEeCCEEEEEEeCC---CCCcEEEEEEcCC
Q 004735 382 YLGILDDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASG---VEPSSVAKVTLDD 433 (732)
Q Consensus 382 ~ly~~~~~~~~~~---~lt~~~~~v~~~~~~~~~~~~~~~~~---~~~~~ly~~dl~~ 433 (732)
.+|-++.-...+. -|......-....+++.++++.+++. .++..|+.+|..+
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 6665542222111 11111111122255677788777643 2334588887554
No 279
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.46 E-value=0.066 Score=51.87 Aligned_cols=202 Identities=11% Similarity=0.016 Sum_probs=101.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceeEEECC-EEEEEeCCCCeE
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l-~~~~~~~~~~~~~~g~~~~~~~~~-~i~f~~~~~~~l 167 (732)
.+..++.+|.+.|||..... -.|=+.++.+| +...+ +..+......+ ...| ...+.+ ....|
T Consensus 63 ap~dvapapdG~VWft~qg~-----gaiGhLdP~tG-ev~~ypLg~Ga~Phgiv---------~gpdg~~Witd-~~~aI 126 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-----GAIGHLDPATG-EVETYPLGSGASPHGIV---------VGPDGSAWITD-TGLAI 126 (353)
T ss_pred CccccccCCCCceEEecCcc-----ccceecCCCCC-ceEEEecCCCCCCceEE---------ECCCCCeeEec-Cccee
Confidence 44556656567799987533 35667788876 33222 22221111111 2222 233333 22267
Q ss_pred EEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-ce
Q 004735 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FY 246 (732)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~-~~ 246 (732)
-++|.++ .+.++.+-...-.......+.|+++|+. .|+....- -=++|...+. ++......+ --
T Consensus 127 ~R~dpkt--~evt~f~lp~~~a~~nlet~vfD~~G~l-WFt~q~G~---------yGrLdPa~~~---i~vfpaPqG~gp 191 (353)
T COG4257 127 GRLDPKT--LEVTRFPLPLEHADANLETAVFDPWGNL-WFTGQIGA---------YGRLDPARNV---ISVFPAPQGGGP 191 (353)
T ss_pred EEecCcc--cceEEeecccccCCCcccceeeCCCccE-EEeecccc---------ceecCcccCc---eeeeccCCCCCC
Confidence 7888776 5555443221112334567889999984 66654221 1134554443 332221111 12
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC-CCCcEEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-pDg~l~~~~~~~~g~~ 325 (732)
++.+..|||+ +.|.+.. .+.|-.+|.. +|... +...++.. ..-.+=.|+ |.|++ +++. .+..
T Consensus 192 yGi~atpdGs-vwyasla-------gnaiaridp~-~~~ae-v~p~P~~~----~~gsRriwsdpig~~-witt--wg~g 254 (353)
T COG4257 192 YGICATPDGS-VWYASLA-------GNAIARIDPF-AGHAE-VVPQPNAL----KAGSRRIWSDPIGRA-WITT--WGTG 254 (353)
T ss_pred cceEECCCCc-EEEEecc-------ccceEEcccc-cCCcc-eecCCCcc----cccccccccCccCcE-EEec--cCCc
Confidence 4567899998 7777632 3347777766 55332 11112210 111233453 44544 4443 4667
Q ss_pred eEEEEeccCCeEEE
Q 004735 326 NLHKWIESNNEVLA 339 (732)
Q Consensus 326 ~l~~~d~~~g~~~~ 339 (732)
.++++|+.+...+.
T Consensus 255 ~l~rfdPs~~sW~e 268 (353)
T COG4257 255 SLHRFDPSVTSWIE 268 (353)
T ss_pred eeeEeCccccccee
Confidence 89999998766543
No 280
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.45 E-value=0.00022 Score=48.15 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.4
Q ss_pred EEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEE
Q 004735 237 KVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 277 (732)
Q Consensus 237 ~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v 277 (732)
++++........|.|||||++|+|++.... ....+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence 467777778889999999999999994442 13455764
No 281
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.42 E-value=0.025 Score=58.39 Aligned_cols=214 Identities=11% Similarity=0.062 Sum_probs=110.9
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEe
Q 004735 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHS 171 (732)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d 171 (732)
-.++|. ++.-|-+...- +++..+|-...+ +..+.++. ++-.+....|.++.-+.+...++.|+++-
T Consensus 280 ~slKWn-k~G~yilS~~v--D~ttilwd~~~g---~~~q~f~~--------~s~~~lDVdW~~~~~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 280 FSLKWN-KKGTYILSGGV--DGTTILWDAHTG---TVKQQFEF--------HSAPALDVDWQSNDEFATSSTDGCIHVCK 345 (524)
T ss_pred EEEEEc-CCCCEEEeccC--CccEEEEeccCc---eEEEeeee--------ccCCccceEEecCceEeecCCCceEEEEE
Confidence 577888 55444444332 466555544322 33333321 22222334444443344445667788777
Q ss_pred CCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccc
Q 004735 172 IDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPR 250 (732)
Q Consensus 172 ~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~ 250 (732)
+.. ..| ..+... ........|.|.|+.|+-.+++. .-.||-+.-+ +. ...|-.....+....
T Consensus 346 v~~--~~P~~t~~GH----~g~V~alk~n~tg~LLaS~SdD~-------TlkiWs~~~~-~~---~~~l~~Hskei~t~~ 408 (524)
T KOG0273|consen 346 VGE--DRPVKTFIGH----HGEVNALKWNPTGSLLASCSDDG-------TLKIWSMGQS-NS---VHDLQAHSKEIYTIK 408 (524)
T ss_pred ecC--CCcceeeecc----cCceEEEEECCCCceEEEecCCC-------eeEeeecCCC-cc---hhhhhhhccceeeEe
Confidence 764 333 233332 44567778999999755444432 2344433221 22 233332233344578
Q ss_pred cCCCCC---------eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 251 MDPRGE---------RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 251 ~SPDG~---------~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
|||+|. .|+..+ ..+.+.++|+. .|.. +..+.... ..+..+++||||+.+...+.
T Consensus 409 wsp~g~v~~n~~~~~~l~sas--------~dstV~lwdv~-~gv~--i~~f~kH~----~pVysvafS~~g~ylAsGs~- 472 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASAS--------FDSTVKLWDVE-SGVP--IHTLMKHQ----EPVYSVAFSPNGRYLASGSL- 472 (524)
T ss_pred ecCCCCccCCCcCCceEEEee--------cCCeEEEEEcc-CCce--eEeeccCC----CceEEEEecCCCcEEEecCC-
Confidence 888876 233332 23457788888 6754 44454443 66889999999994444444
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
.|. +..++..+++.-+-..+...+....|..
T Consensus 473 dg~--V~iws~~~~~l~~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 473 DGC--VHIWSTKTGKLVKSYQGTGGIFELCWNA 503 (524)
T ss_pred CCe--eEeccccchheeEeecCCCeEEEEEEcC
Confidence 454 4445566665443333332333345553
No 282
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.004 Score=69.28 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=85.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+..+++.. .+..|-++++.+. +..+.+-.. ........++|+|++|+.++-+ ..++++++..+..
T Consensus 108 g~~iaags-dD~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 108 GKMIAAGS-DDTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQDGIL 172 (933)
T ss_pred CcEEEeec-CceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcccchh
Confidence 33555443 3445777777652 334444433 3345667899999998777652 5889999988751
Q ss_pred cccEEcc---cC-----CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 234 QEPKVLV---SG-----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 234 ~~~~~lt---~~-----~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
...|+ .. ......|+|+|||.++++...+ ..+-+++.+ +.+.. -.+....-. ..+..
T Consensus 173 --~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~-~we~~--f~Lr~~~~s--s~~~~ 237 (933)
T KOG1274|consen 173 --SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRK-GWELQ--FKLRDKLSS--SKFSD 237 (933)
T ss_pred --hhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccC-Cceeh--eeecccccc--cceEE
Confidence 11222 11 2345679999998888887633 337777766 55432 222222101 23667
Q ss_pred ceeCCCCc-EEEEEeccCCeeeEEEEeccC
Q 004735 306 PKWSSKGE-LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~~~g~~~l~~~d~~~ 334 (732)
.+|||.|+ |+. +.. .|+ |.++|.++
T Consensus 238 ~~wsPnG~YiAA-s~~-~g~--I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAA-STL-DGQ--ILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEee-ecc-CCc--EEEEeccc
Confidence 89999998 543 333 344 44455553
No 283
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.022 Score=61.06 Aligned_cols=250 Identities=8% Similarity=0.026 Sum_probs=135.9
Q ss_pred EEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEe
Q 004735 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY 193 (732)
Q Consensus 116 ~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~ 193 (732)
.+|.++..+| ....+.... ++...++.++ ++.|+ +-..++.+.++|.... ...+.+... +..+.
T Consensus 198 ~vylW~~~s~-~v~~l~~~~--------~~~vtSv~ws~~G~~La-vG~~~g~v~iwD~~~~-k~~~~~~~~---h~~rv 263 (484)
T KOG0305|consen 198 SVYLWSASSG-SVTELCSFG--------EELVTSVKWSPDGSHLA-VGTSDGTVQIWDVKEQ-KKTRTLRGS---HASRV 263 (484)
T ss_pred eEEEEecCCC-ceEEeEecC--------CCceEEEEECCCCCEEE-EeecCCeEEEEehhhc-cccccccCC---cCcee
Confidence 3555555443 444444321 2234455554 33444 4445678999998752 334444441 25677
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
+..+|. +.. +-..... ..|...|+...+.. .+.+......+.+..|++||+++|--. +.+
T Consensus 264 g~laW~--~~~-lssGsr~--------~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGg--------nDN 323 (484)
T KOG0305|consen 264 GSLAWN--SSV-LSSGSRD--------GKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGG--------NDN 323 (484)
T ss_pred EEEecc--Cce-EEEecCC--------CcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCC--------Ccc
Confidence 888887 332 2222211 45666666654310 121333334567889999999887332 345
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
.++++|.. +-+. ...+.+.. ..+-.++|+|=-+ |+.+... .....|..+|..+|+...-..-...+....|
T Consensus 324 ~~~Iwd~~-~~~p--~~~~~~H~----aAVKA~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~W 395 (484)
T KOG0305|consen 324 VVFIWDGL-SPEP--KFTFTEHT----AAVKALAWCPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQVCSLIW 395 (484)
T ss_pred ceEeccCC-Cccc--cEEEeccc----eeeeEeeeCCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCceeeEEE
Confidence 58888874 2222 33344443 5667889999655 7666544 4556777788877765443333334455666
Q ss_pred eecccceeeeeecCCCCEEEEEEE-ECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCC
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASG 420 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~-~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~ 420 (732)
++ ..+.|+.+.. ..+.-.||.+.. -+.+..++.....|-.+ ..+++..++.+++.
T Consensus 396 sk------------~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 396 SK------------KYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred cC------------CCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 65 5555665542 334456777753 23344555555555555 34555555555443
No 284
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.37 E-value=0.0087 Score=67.90 Aligned_cols=123 Identities=17% Similarity=0.041 Sum_probs=71.0
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
.....|..||||+.+++-+.-+ +.|.+++..+.+. .+.+-.....+-+..|.|=|+++|-.+.|+
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~D---------nsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr---- 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLD---------NSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQSDDR---- 193 (942)
T ss_pred CCccceeccCCCccEEEEeccc---------ceEEEEcccccee--eeeeecccccccceEECCccCeeeeecCCc----
Confidence 3445788999999976655442 5777888777551 444555566778899999999998776333
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEec
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~ 332 (732)
.|-++.+..-|-.+.++-..+.- .-.....++.|||||+ |........+...+-+++-
T Consensus 194 ----tikvwrt~dw~i~k~It~pf~~~-~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 194 ----TLKVWRTSDWGIEKSITKPFEES-PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ----eEEEEEcccceeeEeeccchhhC-CCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 35555544112221111111110 0003467899999999 5433222133334444443
No 285
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.35 E-value=0.0016 Score=63.87 Aligned_cols=141 Identities=10% Similarity=0.143 Sum_probs=86.0
Q ss_pred eeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEE
Q 004735 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 275 (732)
Q Consensus 196 ~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l 275 (732)
..|||+|++|+.... .+|.+-|..+-+ +.+|..--+.+....|+.|..+|......+ ..+
T Consensus 14 c~fSp~g~yiAs~~~----------yrlviRd~~tlq---~~qlf~cldki~yieW~ads~~ilC~~yk~-------~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR----------YRLVIRDSETLQ---LHQLFLCLDKIVYIEWKADSCHILCVAYKD-------PKV 73 (447)
T ss_pred eeECCCCCeeeeeee----------eEEEEeccchhh---HHHHHHHHHHhhheeeeccceeeeeeeecc-------ceE
Confidence 359999999766544 577777777666 555554445566789999999988776433 237
Q ss_pred EEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 276 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 276 ~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
.+.++. --+. .-.+.... .++....|||||+ |+..+.- + -+|-++.+.+.+.-.|...+...
T Consensus 74 qvwsl~-Qpew--~ckIdeg~----agls~~~WSPdgrhiL~tseF-~--lriTVWSL~t~~~~~~~~pK~~~------- 136 (447)
T KOG4497|consen 74 QVWSLV-QPEW--YCKIDEGQ----AGLSSISWSPDGRHILLTSEF-D--LRITVWSLNTQKGYLLPHPKTNV------- 136 (447)
T ss_pred EEEEee-ccee--EEEeccCC----CcceeeeECCCcceEeeeecc-e--eEEEEEEeccceeEEecccccCc-------
Confidence 777876 2332 22233333 5678899999999 7766554 2 34555555555444443222122
Q ss_pred cccceeeeeecCCCCEEEEEEEEC
Q 004735 355 GINSYEIIQSHGEKNLIACSYRQN 378 (732)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~s~~~ 378 (732)
..+.|.+ +++...+.++++
T Consensus 137 --kg~~f~~---dg~f~ai~sRrD 155 (447)
T KOG4497|consen 137 --KGYAFHP---DGQFCAILSRRD 155 (447)
T ss_pred --eeEEECC---CCceeeeeeccc
Confidence 2344443 677666666654
No 286
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.35 E-value=0.031 Score=53.54 Aligned_cols=212 Identities=7% Similarity=-0.080 Sum_probs=106.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++++...+..|-++|... +++..-+... ..-....|||||+++++...+ ..|-.+|..+-+
T Consensus 78 d~~atas~dk~ir~wd~r~--~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kd---------D~it~id~r~~~--- 139 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRS--GKCTARIETK----GENINITWSPDGEYIAVGNKD---------DRITFIDARTYK--- 139 (313)
T ss_pred cceEEecCCceEEEEEecc--CcEEEEeecc----CcceEEEEcCCCCEEEEecCc---------ccEEEEEecccc---
Confidence 4566666677788888877 5554444321 111445799999998776442 467778876544
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-E
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 314 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l 314 (732)
+..--.-..+.....|+-++ -++|+. +. .+.+-++... +++.+..+.... ..-.-+.++|||+ +
T Consensus 140 ~~~~~~~~~e~ne~~w~~~n-d~Fflt-~G------lG~v~ILsyp---sLkpv~si~AH~----snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 140 IVNEEQFKFEVNEISWNNSN-DLFFLT-NG------LGCVEILSYP---SLKPVQSIKAHP----SNCICIEFDPDGRYF 204 (313)
T ss_pred eeehhcccceeeeeeecCCC-CEEEEe-cC------CceEEEEecc---ccccccccccCC----cceEEEEECCCCceE
Confidence 22212223345567788554 477776 22 2234444433 223344444443 3334567999998 4
Q ss_pred EEEEeccCCeeeEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc-
Q 004735 315 FFVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS- 392 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~- 392 (732)
+.-+.+ ..+-++|++.- -.|.++..++.+ +.+.|.- +|+.|. +..++-.-.|.. .++|.
T Consensus 205 A~GsAD----AlvSLWD~~ELiC~R~isRldwpV---------RTlSFS~---dg~~lA-SaSEDh~IDIA~--vetGd~ 265 (313)
T KOG1407|consen 205 ATGSAD----ALVSLWDVDELICERCISRLDWPV---------RTLSFSH---DGRMLA-SASEDHFIDIAE--VETGDR 265 (313)
T ss_pred eecccc----ceeeccChhHhhhheeeccccCce---------EEEEecc---Ccceee-ccCccceEEeEe--cccCCe
Confidence 432222 22334555431 134444443333 3444442 555554 444444444543 44443
Q ss_pred eEEeccCCCceEEeeEeCCEEEEEEeC
Q 004735 393 LSLLDIPFTDIDNITLGNDCLFVEGAS 419 (732)
Q Consensus 393 ~~~lt~~~~~v~~~~~~~~~~~~~~~~ 419 (732)
+.++........-...+...++.++.+
T Consensus 266 ~~eI~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 266 VWEIPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred EEEeeccCCceeEEecCCCceeeEEec
Confidence 444443211111113445555555443
No 287
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.33 E-value=0.002 Score=65.11 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=92.2
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
..+++...+..|-.+|..+ ...++-.+. +.+......+++|..|.....+ ..|-++|+.+.+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~e--- 374 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRS--ADKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKE--- 374 (459)
T ss_pred eeeeecccccceEEEeccC--CceeeEeec----CcceeeEeeccCCeEEeeecCC---------Cceeeeeccccc---
Confidence 3455555667788889776 444443333 3466778899999997665332 477889999887
Q ss_pred cEEcccCCCc-----eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 236 PKVLVSGSDF-----YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 236 ~~~lt~~~~~-----~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
+++...-.++ .....|||||+++|--+. +..||++++. +|++..+......+ ..+....|+|
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~--------dgsv~iW~v~-tgKlE~~l~~s~s~----~aI~s~~W~~ 441 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA--------DGSVYIWSVF-TGKLEKVLSLSTSN----AAITSLSWNP 441 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccC--------CCcEEEEEcc-CceEEEEeccCCCC----cceEEEEEcC
Confidence 6665433222 345689999998876552 3459999999 88885555444443 4577889999
Q ss_pred CCc-EEEEEeccCCeeeEE
Q 004735 311 KGE-LFFVTDRKNGFWNLH 328 (732)
Q Consensus 311 Dg~-l~~~~~~~~g~~~l~ 328 (732)
-|+ ++ .+++ +....||
T Consensus 442 sG~~Ll-sadk-~~~v~lW 458 (459)
T KOG0288|consen 442 SGSGLL-SADK-QKAVTLW 458 (459)
T ss_pred CCchhh-cccC-CcceEec
Confidence 998 54 3444 4444444
No 288
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.33 E-value=0.0028 Score=60.46 Aligned_cols=207 Identities=18% Similarity=0.156 Sum_probs=108.2
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHCC-----CEEEEEcCCCCCCCChhhHH-hhcc--CC----Cccc----HHHH
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSRG-----WAFVDVNYGGSTGYGREFRE-RLLG--RW----GIVD----VNDC 558 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G-----~~v~~~d~rG~~g~g~~~~~-~~~~--~~----~~~~----~~D~ 558 (732)
.| .||+||..+. ...+..++..+...+ --++.+|--|+-.....+.. +.+. +. +... ..=+
T Consensus 46 iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wl 122 (288)
T COG4814 46 IP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWL 122 (288)
T ss_pred cc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHH
Confidence 45 4689997433 345566676676655 34667776664211111000 0000 00 0011 2235
Q ss_pred HHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-------CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCC
Q 004735 559 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-------FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGS 631 (732)
Q Consensus 559 ~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-------~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (732)
..++.+|.+++.+ .++-++||||||.....++. .| .+...|.+.+.++...+.. ......-.....-..
T Consensus 123 k~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P-~lnK~V~l~gpfN~~~l~~-de~v~~v~~~~~~~~ 198 (288)
T COG4814 123 KKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLP-PLNKLVSLAGPFNVGNLVP-DETVTDVLKDGPGLI 198 (288)
T ss_pred HHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCc-chhheEEecccccccccCC-CcchheeeccCcccc
Confidence 6778899888765 48999999999998887775 24 3566666666555111110 000000000000000
Q ss_pred hhhhhhcCccccCCCC--CCCEEEEEeCCC------CccChHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCcccHHH
Q 004735 632 EKDYYEKSPINFVDKF--SCPIILFQGLED------KVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKF 701 (732)
Q Consensus 632 ~~~~~~~sp~~~~~~i--~~P~Lii~G~~D------~~v~~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~ 701 (732)
...|.++-. .....+ ..-+|+|.|+-| ..||...+...+..+...++.+.-.+++| +.|.-. +++ ..
T Consensus 199 ~t~y~~y~~-~n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~l-hen-~~ 275 (288)
T COG4814 199 KTPYYDYIA-KNYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKL-HEN-PT 275 (288)
T ss_pred CcHHHHHHH-hcceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhcc-CCC-hh
Confidence 011111100 011112 256899999765 46888899999999988877665555665 567532 233 34
Q ss_pred HHHHHHHHHH
Q 004735 702 TLEQQMVFFA 711 (732)
Q Consensus 702 ~~~~~~~fl~ 711 (732)
+.+.+..||-
T Consensus 276 v~~yv~~FLw 285 (288)
T COG4814 276 VAKYVKNFLW 285 (288)
T ss_pred HHHHHHHHhh
Confidence 5555666653
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.33 E-value=0.049 Score=53.97 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred eEEEEEEcCCCCccccEEccc-CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee-EEecCCCCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR-VCVAGFDPT 298 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~-~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~-~~~~~~~~~ 298 (732)
..|+.+|..+|+ ..--.. .......| ..++..|++.. ....|+.+|.. +|+..+. ....... .
T Consensus 46 ~~l~~~d~~tG~---~~W~~~~~~~~~~~~--~~~~~~v~v~~--------~~~~l~~~d~~-tG~~~W~~~~~~~~~-~ 110 (238)
T PF13360_consen 46 GNLYALDAKTGK---VLWRFDLPGPISGAP--VVDGGRVYVGT--------SDGSLYALDAK-TGKVLWSIYLTSSPP-A 110 (238)
T ss_dssp SEEEEEETTTSE---EEEEEECSSCGGSGE--EEETTEEEEEE--------TTSEEEEEETT-TSCEEEEEEE-SSCT-C
T ss_pred CEEEEEECCCCC---EEEEeecccccccee--eeccccccccc--------ceeeeEecccC-Ccceeeeeccccccc-c
Confidence 699999998887 322221 22222223 33566676665 12369999988 8987655 2222211 0
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc-ccCCCceeecc--cceeeeeecCCCCEEEEEE
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLWVFGI--NSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~~w~~~~--~~~~~~~~~~~~~~l~~~s 375 (732)
..........++..++.... ...|+.+|+++|+..--.+... ....+...... ....+ .++.+++..
T Consensus 111 --~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~ 180 (238)
T PF13360_consen 111 --GVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-----SDGRVYVSS 180 (238)
T ss_dssp --STB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-----CTTEEEEEC
T ss_pred --ccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-----ECCEEEEEc
Confidence 11122233334553333332 2468999999998642221111 10010000000 01111 334555544
Q ss_pred EECCEEEEEEEECCCCceEEeccCCCceEE-eeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 376 RQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 376 ~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.++. ++.+|..+++..- ......... ....++.++ +.+. ...|+.+|+++|+.
T Consensus 181 -~~g~--~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~-~~~~---~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 181 -GDGR--VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLY-VTSS---DGRLYALDLKTGKV 234 (238)
T ss_dssp -CTSS--EEEEETTTTEEEE-EECSS-ECECEECCCTEEE-EEET---TTEEEEEETTTTEE
T ss_pred -CCCe--EEEEECCCCCEEE-EecCCCccCCceeeCCEEE-EEeC---CCEEEEEECCCCCE
Confidence 3443 6667999887443 222333333 244455554 4443 36899999999973
No 290
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.32 E-value=0.0019 Score=63.67 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCCCccCCcccHHHHHHHHCCC--EEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC
Q 004735 493 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 570 (732)
Q Consensus 493 ~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~--~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 570 (732)
....++||+||.-.. ........+|.....|+ .++.+..+..+. -..|..... -......++...+..|.+..
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~~--~a~~s~~~l~~~L~~L~~~~- 90 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDRE--SARFSGPALARFLRDLARAP- 90 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhhh--hHHHHHHHHHHHHHHHHhcc-
Confidence 456899999997222 22233345555555555 688888875433 112211110 00112445556666665552
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh----C-C-----CcceEEEeecCcCCHHHHHhhcchhhhhhhhhhcCChhhhhhcCc
Q 004735 571 ADEKRLCITGGSAGGYTTLAALA----F-R-----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 640 (732)
Q Consensus 571 ~d~~ri~i~G~S~GG~~a~~~~~----~-p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 640 (732)
...+|.|++||||+.+.+.++. . . .+|..+++.+|-.+...+.....
T Consensus 91 -~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~~---------------------- 147 (233)
T PF05990_consen 91 -GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQLP---------------------- 147 (233)
T ss_pred -CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHHH----------------------
Confidence 3579999999999999988864 1 1 26778888888777544321100
Q ss_pred cccCCCCCCCEEEEEeCCCCccC
Q 004735 641 INFVDKFSCPIILFQGLEDKVVP 663 (732)
Q Consensus 641 ~~~~~~i~~P~Lii~G~~D~~v~ 663 (732)
.+.+...++.+.+..+|....
T Consensus 148 --~~~~~~~~itvy~s~~D~AL~ 168 (233)
T PF05990_consen 148 --DLGSSARRITVYYSRNDRALK 168 (233)
T ss_pred --HHhhcCCCEEEEEcCCchHHH
Confidence 122334789999999997543
No 291
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.13 Score=55.11 Aligned_cols=205 Identities=14% Similarity=0.072 Sum_probs=120.6
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
.....+++|++++....+ ...+.++|.++.+. ...+.-+. .-....++|||+.++...... ...
T Consensus 77 ~~i~v~~~~~~vyv~~~~--------~~~v~vid~~~~~~--~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-----~~~ 140 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD--------SNTVSVIDTATNTV--LGSIPVGL-GPVGLAVDPDGKYVYVANAGN-----GNN 140 (381)
T ss_pred cceeeCCCCCeEEEecCC--------CCeEEEEcCcccce--eeEeeecc-CCceEEECCCCCEEEEEeccc-----CCc
Confidence 455789999985554432 26889999766541 11222222 334568999999997655321 246
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccc---cccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~---~~~~~~ 350 (732)
.+.++|-. ++++... ...+. .....+.+|||+.+|+.+. +...|..+|.++....+ .... .....|
T Consensus 141 ~vsvid~~-t~~~~~~-~~vG~------~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P 209 (381)
T COG3391 141 TVSVIDAA-TNKVTAT-IPVGN------TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP 209 (381)
T ss_pred eEEEEeCC-CCeEEEE-EecCC------CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCCCC
Confidence 68899877 6655333 33332 2367899999995555553 45568888877765554 2110 001111
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc--CCCceEEe-eEeCCEEEEEEeCCCCCcEEE
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI--PFTDIDNI-TLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~--~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly 427 (732)
....+.+ ++..+|.....+....+..++..++....... +......+ ..+++..+|...+. ...++
T Consensus 210 ------~~i~v~~---~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~ 278 (381)
T COG3391 210 ------AGIAVDP---DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVS 278 (381)
T ss_pred ------ceEEECC---CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEE
Confidence 1223332 77777777665555688889998887766532 22112222 45556666666544 56788
Q ss_pred EEEcCCCcc
Q 004735 428 KVTLDDHKL 436 (732)
Q Consensus 428 ~~dl~~~~~ 436 (732)
.+|..+..+
T Consensus 279 vid~~~~~v 287 (381)
T COG3391 279 VIDGATDRV 287 (381)
T ss_pred EEeCCCCce
Confidence 888777654
No 292
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.042 Score=61.49 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=88.9
Q ss_pred eCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 161 NYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
...++.+-++.... ++.. .|+.. .....+.+++-+|+++++-.++ ..|-+++...+.. .+.+
T Consensus 72 ~s~~~tv~~y~fps--~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD---------~~vK~~~~~D~s~--~~~l 134 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPS--GEEDTILARF----TLPIRDLAVSGSGKMIAAGSDD---------TAVKLLNLDDSSQ--EKVL 134 (933)
T ss_pred eeccceEEEeeCCC--CCccceeeee----eccceEEEEecCCcEEEeecCc---------eeEEEEeccccch--heee
Confidence 33455677777766 4443 44433 3445778899999998887663 4677788776541 3334
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc----cccCcCceeCCCCc-E
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI----VESPTEPKWSSKGE-L 314 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~----~~~~~~~~wspDg~-l 314 (732)
-...+.+.+..++|.|..||..+ -++.|++++++ +|.+. ..+++-.+.- -.....++|+|+|. +
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss--------~dG~v~iw~~~-~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l 203 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSS--------CDGKVQIWDLQ-DGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTL 203 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEe--------cCceEEEEEcc-cchhh--hhcccCCccccccccceeeeeeecCCCCeE
Confidence 34445667889999999998776 34459999998 77642 2122211100 02346789999966 6
Q ss_pred EEEEeccCCeeeEEEEeccCCeE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
++...+ ..+-.++..+.+.
T Consensus 204 a~~~~d----~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 204 AVPPVD----NTVKVYSRKGWEL 222 (933)
T ss_pred EeeccC----CeEEEEccCCcee
Confidence 665544 2344555555543
No 293
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.24 E-value=0.093 Score=62.29 Aligned_cols=235 Identities=7% Similarity=-0.033 Sum_probs=119.3
Q ss_pred ceeEEECC-EEEEEeCCCCeEEEEeCCCCC--CC----c-eecCCCCCCCCeEeeceeecCC-CCEEEEEEeccCCCCCC
Q 004735 148 GAFRIFGD-TVIFSNYKDQRLYKHSIDSKD--SS----P-LPITPDYGEPLVSYADGIFDPR-FNRYVTVREDRRQDALN 218 (732)
Q Consensus 148 ~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~--~~----~-~~lt~~~~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~ 218 (732)
.+..++.+ .++++...++.|.++++.... +. + ..+.. ........|+|. +++|+ +....
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~~la-s~~~D------ 554 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-----RSKLSGICWNSYIKSQVA-SSNFE------ 554 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-----cCceeeEEeccCCCCEEE-EEeCC------
Confidence 33444432 455566677888888875300 10 0 01111 122355678875 55544 43322
Q ss_pred ceeEEEEEEcCCCCccccEEcccCCCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
..|.++|+.+++. ...+......+....|+| ||..|+-.+ ....|.++|+. ++.. ...+...
T Consensus 555 --g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs--------~Dg~v~iWd~~-~~~~--~~~~~~~-- 617 (793)
T PLN00181 555 --GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGS--------DDGSVKLWSIN-QGVS--IGTIKTK-- 617 (793)
T ss_pred --CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEc--------CCCEEEEEECC-CCcE--EEEEecC--
Confidence 5788889987651 233433445567788997 777665444 23458888987 5644 2333322
Q ss_pred CccccCcCceeC-CCCcEEEEEeccCCeeeEEEEeccCCeE--EEecccccccCCCceeecccceeeeeecCCCCEEEEE
Q 004735 298 TIVESPTEPKWS-SKGELFFVTDRKNGFWNLHKWIESNNEV--LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 374 (732)
Q Consensus 298 ~~~~~~~~~~ws-pDg~l~~~~~~~~g~~~l~~~d~~~g~~--~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 374 (732)
..+....|+ ++|.++++... .+ .|+.+|+.+++. ..+...... ...+.|. ++..| ++
T Consensus 618 ---~~v~~v~~~~~~g~~latgs~-dg--~I~iwD~~~~~~~~~~~~~h~~~---------V~~v~f~----~~~~l-vs 677 (793)
T PLN00181 618 ---ANICCVQFPSESGRSLAFGSA-DH--KVYYYDLRNPKLPLCTMIGHSKT---------VSYVRFV----DSSTL-VS 677 (793)
T ss_pred ---CCeEEEEEeCCCCCEEEEEeC-CC--eEEEEECCCCCccceEecCCCCC---------EEEEEEe----CCCEE-EE
Confidence 234566774 56774444443 34 466777765432 222211111 1123443 55544 45
Q ss_pred EEECCEEEEEEEECC-----CCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 375 YRQNGRSYLGILDDF-----GHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 375 s~~~g~~~ly~~~~~-----~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
...++.-.||-+... ...++.++.....+..+ ...++.+++.++. + ..+++++....
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-D--~~v~iw~~~~~ 740 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-T--NEVFVYHKAFP 740 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-C--CEEEEEECCCC
Confidence 556777777754321 12344454444444444 2333444444442 2 35666665544
No 294
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.23 E-value=0.012 Score=59.00 Aligned_cols=156 Identities=10% Similarity=-0.028 Sum_probs=94.6
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCC---CCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP---DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~---~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
.+.-...+++++.-. .+||++|+.+ .+.|.. .+.+ ....-..+.++.+.+++|-.... ..+|+
T Consensus 91 L~VrmNr~RLvV~Le--e~IyIydI~~----MklLhTI~t~~~n-~~gl~AlS~n~~n~ylAyp~s~t-------~GdV~ 156 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLE--ESIYIYDIKD----MKLLHTIETTPPN-PKGLCALSPNNANCYLAYPGSTT-------SGDVV 156 (391)
T ss_pred EEEEEccceEEEEEc--ccEEEEeccc----ceeehhhhccCCC-ccceEeeccCCCCceEEecCCCC-------CceEE
Confidence 333444567766643 3499999986 233321 1111 22233444566777888864433 37899
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
++|+.+-+. +..+....+..+..+|||||..||-.+ + .++-|.|+.+. +|.. +..+...-.- ..+.
T Consensus 157 l~d~~nl~~--v~~I~aH~~~lAalafs~~G~llATAS-e------KGTVIRVf~v~-~G~k--l~eFRRG~~~--~~Iy 222 (391)
T KOG2110|consen 157 LFDTINLQP--VNTINAHKGPLAALAFSPDGTLLATAS-E------KGTVIRVFSVP-EGQK--LYEFRRGTYP--VSIY 222 (391)
T ss_pred EEEccccee--eeEEEecCCceeEEEECCCCCEEEEec-c------CceEEEEEEcC-CccE--eeeeeCCcee--eEEE
Confidence 999876441 334444455677789999999998765 2 25668899988 6643 3333332100 4567
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEecc
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d~~ 333 (732)
..+|+||++ |..+++ .+.-+|+.++..
T Consensus 223 SL~Fs~ds~~L~~sS~--TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSN--TETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecC--CCeEEEEEeccc
Confidence 889999999 554444 477778877643
No 295
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.014 Score=58.36 Aligned_cols=183 Identities=11% Similarity=0.065 Sum_probs=103.3
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC--CCc-------ccc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI-------QEP 236 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~--~~~-------~~~ 236 (732)
.+-.++-.. ..+..|+... .-.....+|-|-+...+.+.-. .-|.++..+. ... +..
T Consensus 121 vVriy~kss--t~pt~Lks~s---QrnvtclawRPlsaselavgCr---------~gIciW~~s~tln~~r~~~~~s~~~ 186 (445)
T KOG2139|consen 121 VVRIYDKSS--TCPTKLKSVS---QRNVTCLAWRPLSASELAVGCR---------AGICIWSDSRTLNANRNIRMMSTHH 186 (445)
T ss_pred EEEEeccCC--CCCceecchh---hcceeEEEeccCCcceeeeeec---------ceeEEEEcCcccccccccccccccc
Confidence 344455444 5666777652 2334566788876554444332 2333333221 110 001
Q ss_pred EEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 237 KVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 237 ~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
.++.. +...+...+|.+||..|+-.+. +...|.+.|++ .|.-..+. .... +++....|||||..
T Consensus 187 ~qvl~~pgh~pVtsmqwn~dgt~l~tAS~-------gsssi~iWdpd-tg~~~pL~--~~gl----gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 187 LQVLQDPGHNPVTSMQWNEDGTILVTASF-------GSSSIMIWDPD-TGQKIPLI--PKGL----GGFSLLKWSPDGDV 252 (445)
T ss_pred hhheeCCCCceeeEEEEcCCCCEEeeccc-------CcceEEEEcCC-CCCccccc--ccCC----CceeeEEEcCCCCE
Confidence 12222 2334567899999998876653 34558999998 66543232 2232 56778999999995
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+|.+.- .+..+||.-+-.--+.+.++ +...+....|++ .|..|+|+.. |...||.+...+..
T Consensus 253 lfaAt~-davfrlw~e~q~wt~erw~l-gsgrvqtacWsp------------cGsfLLf~~s--gsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 253 LFAATC-DAVFRLWQENQSWTKERWIL-GSGRVQTACWSP------------CGSFLLFACS--GSPRLYSLTFDGED 314 (445)
T ss_pred EEEecc-cceeeeehhcccceecceec-cCCceeeeeecC------------CCCEEEEEEc--CCceEEEEeecCCC
Confidence 555544 45566762221111223333 222556678887 8888888764 66788988766543
No 296
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.018 Score=61.64 Aligned_cols=220 Identities=8% Similarity=-0.010 Sum_probs=128.5
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-C
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-G 242 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~ 242 (732)
...+|+++..+ +...+|.... ...+....|+++|+.|+.-.. ...+.++|....+. ++.+.. .
T Consensus 196 g~~vylW~~~s--~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~---------~g~v~iwD~~~~k~--~~~~~~~h 259 (484)
T KOG0305|consen 196 GQSVYLWSASS--GSVTELCSFG---EELVTSVKWSPDGSHLAVGTS---------DGTVQIWDVKEQKK--TRTLRGSH 259 (484)
T ss_pred cceEEEEecCC--CceEEeEecC---CCceEEEEECCCCCEEEEeec---------CCeEEEEehhhccc--cccccCCc
Confidence 44699999887 7777777652 345677889999999766554 25788889876441 334443 3
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
...+...+|+ +..+ .+... ...|...|+. ..+.. ...+.+.. ..+-...|++|++.+... .
T Consensus 260 ~~rvg~laW~--~~~l--ssGsr------~~~I~~~dvR-~~~~~-~~~~~~H~----qeVCgLkws~d~~~lASG---g 320 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVL--SSGSR------DGKILNHDVR-ISQHV-VSTLQGHR----QEVCGLKWSPDGNQLASG---G 320 (484)
T ss_pred CceeEEEecc--CceE--EEecC------CCcEEEEEEe-cchhh-hhhhhccc----ceeeeeEECCCCCeeccC---C
Confidence 4556667777 2222 22122 3347777776 33211 11233443 567789999999733222 1
Q ss_pred CeeeEEEEeccC-CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCC
Q 004735 323 GFWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 401 (732)
Q Consensus 323 g~~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~ 401 (732)
....++++|... .....++.....+....|.|- ...|+.+........|...+..+|.....-....
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~------------q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW------------QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCC------------ccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 223466666633 334456666667777788762 2235555544445667777777776543333344
Q ss_pred ceEEe--eEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 402 DIDNI--TLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 402 ~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.|..+ +...+.++...+.....-.||.+.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 56666 344556666555555544566664
No 297
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.18 E-value=0.0019 Score=70.40 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCccc----------------HHHHHHHHCCCEEEEEcCCC
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----------------LSIQYWTSRGWAFVDVNYGG 534 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~----------------~~~~~l~~~G~~v~~~d~rG 534 (732)
.+..+..|++...+ .....|+||+++|||+........ .....|.+. ..++.+|.+-
T Consensus 59 ~~~~lFyw~~~s~~------~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~ 131 (462)
T PTZ00472 59 TDKHYFYWAFGPRN------GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPA 131 (462)
T ss_pred CCceEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCC
Confidence 36678888887654 145579999999998765322110 001123333 4677888542
Q ss_pred CCCCChhhHHhhccCC-CcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh----CC-------CcceEE
Q 004735 535 STGYGREFRERLLGRW-GIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA----FR-------DTFKAG 601 (732)
Q Consensus 535 ~~g~g~~~~~~~~~~~-~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~----~p-------~~~~a~ 601 (732)
..|++.. ....... .....+|+.++++.+.++ +.....++.|+|+||||..+..++. +. -.++++
T Consensus 132 G~G~S~~--~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi 209 (462)
T PTZ00472 132 GVGFSYA--DKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGL 209 (462)
T ss_pred CcCcccC--CCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEE
Confidence 2343322 1111000 012367777777755544 3445689999999999998866664 11 147899
Q ss_pred EeecCcCCHH
Q 004735 602 ASLYGVADLS 611 (732)
Q Consensus 602 v~~~~~~d~~ 611 (732)
++..|..|..
T Consensus 210 ~IGNg~~dp~ 219 (462)
T PTZ00472 210 AVGNGLTDPY 219 (462)
T ss_pred EEeccccChh
Confidence 9998887653
No 298
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.14 E-value=0.11 Score=51.25 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=80.6
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCC--CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC-CCCc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDY--GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQNI 233 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~--~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~-~~~~ 233 (732)
++.+..+++-|.++|.-+ |+.|.--... .++-.......|||||.+|++-- ++-|-++|+. .|..
T Consensus 125 l~a~ssr~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy----------krcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY----------KRCIRVFDTSRPGRD 192 (406)
T ss_pred eeeeccccCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeecc----------cceEEEeeccCCCCC
Confidence 444444556677888766 5443211110 00001124577999999976542 2567777773 3431
Q ss_pred cc-cEEcccC----CCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCce
Q 004735 234 QE-PKVLVSG----SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 307 (732)
Q Consensus 234 ~~-~~~lt~~----~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
-+ ...++.+ .+.....++|| |.+.+|+-+.. .++-++.-. ++.+ +.++-+.. +++..++
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~--------q~~giy~~~-~~~p--l~llggh~----gGvThL~ 257 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG--------QRVGIYNDD-GRRP--LQLLGGHG----GGVTHLQ 257 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeeccc--------ceeeeEecC-CCCc--eeeecccC----CCeeeEE
Confidence 00 1122222 23456678899 66677766522 223333333 3433 55566665 8899999
Q ss_pred eCCCCcEEEEEeccCCeeeEEEEeccC
Q 004735 308 WSSKGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 308 wspDg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
|-+||.-+|+..+.. ..|..+|+..
T Consensus 258 ~~edGn~lfsGaRk~--dkIl~WDiR~ 282 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKD--DKILCWDIRY 282 (406)
T ss_pred eccCcCeecccccCC--CeEEEEeehh
Confidence 999999455554423 3455566543
No 299
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.066 Score=56.76 Aligned_cols=160 Identities=10% Similarity=0.059 Sum_probs=94.9
Q ss_pred ceeecCCCCEEEEEEecc---CCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 195 DGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~---~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
...|.+-|+-|+...... .+..+...+.||.++.++.. .+.-....+-+....|||+|+-.+.+- .-||.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~L~k~GPVhdv~W~~s~~EF~Vvy---GfMPA- 294 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVPLLKEGPVHDVTWSPSGREFAVVY---GFMPA- 294 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEecCCCCCceEEEECCCCCEEEEEE---ecccc-
Confidence 356999999887765432 23445557999999998544 332233345566789999999887664 23443
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccccc-ccCCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRP 350 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~ 350 (732)
.+-++|+. |.+ +-.+... .-..+.|+|-|+++..+.-++=...+-.+|..+ .+.|...+. +.+--
T Consensus 295 --kvtifnlr--~~~--v~df~eg------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~ 360 (566)
T KOG2315|consen 295 --KVTIFNLR--GKP--VFDFPEG------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVF 360 (566)
T ss_pred --eEEEEcCC--CCE--eEeCCCC------CccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCCceEE
Confidence 36777876 443 3333332 235788999999665654422233455667665 334442221 22234
Q ss_pred ceeecccceeeeeecCCCCEEEEEEE-----ECCEEEEEEEE
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYR-----QNGRSYLGILD 387 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~-----~~g~~~ly~~~ 387 (732)
.|+| ||.+|+.... .++...||.++
T Consensus 361 eW~P------------dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 361 EWSP------------DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EEcC------------CCcEEEEEeccccEEecCCeEEEEec
Confidence 5665 7777765543 24455677664
No 300
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.04 E-value=0.4 Score=54.90 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=109.0
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD 244 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~ 244 (732)
.++|++|.. +....+... ...+..+.++++++.++.+.......+. ....+.....++. +..++.+..
T Consensus 149 ~~l~~~d~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~ 216 (620)
T COG1506 149 SDLYVVDIE---SKLIKLGLG----NLDVVSFATDGDGRLVASIRLDDDADPW--VTNLYVLIEGNGE---LESLTPGEG 216 (620)
T ss_pred cceEEEccC---cccccccCC----CCceeeeeeCCCCceeEEeeeccccCCc--eEeeEEEecCCCc---eEEEcCCCc
Confidence 478888876 333334433 3555677778888876666554431221 2344444445666 777887777
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g 323 (732)
....+.+.+||+.+++.....+..-+....+++.+.+ .++... .....+.. .......+.-++. ++|......+
T Consensus 217 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g 291 (620)
T COG1506 217 SISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGE-LGEVDG--DLSSGDDT--RGAWAVEGGLDGDGLLFIATDGGG 291 (620)
T ss_pred eeeeeeeCCCCCeeEEeccCCccCccccceEEEEecc-ccccce--eeccCCcc--cCcHHhccccCCCcEEEEEecCCC
Confidence 7788999999999999886665311234556676633 444322 11111000 1111222223444 7776665467
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC-EEEEEEEECCCCceEEec
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-~~~ly~~~~~~~~~~~lt 397 (732)
...++.++..++....+......+ ..++. +++.+++...... ..++|+++. ++..+++
T Consensus 292 ~~~l~~~~~~~~~~~~~~~~~~~v--~~f~~------------~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~ 350 (620)
T COG1506 292 SSPLFRVDDLGGGVEGLSGDDGGV--PGFDV------------DGRKLALAYSSPTEPPEIYLYDR--GEEAKLT 350 (620)
T ss_pred ceEEEEEeccCCceeeecCCCceE--EEEee------------CCCEEEEEecCCCCccceEEEcC--CCceEEe
Confidence 777777765555443333221111 11111 5666766665444 678998876 3344444
No 301
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.03 E-value=0.0068 Score=68.77 Aligned_cols=137 Identities=10% Similarity=0.022 Sum_probs=80.5
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC----------CCcc------ccEEcccCCCceeccccCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----------QNIQ------EPKVLVSGSDFYAFPRMDPRGE 256 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~----------~~~~------~~~~lt~~~~~~~~p~~SPDG~ 256 (732)
..-++|||||++++.-.++. -|.++..+. |... ....|-....-+....||||++
T Consensus 72 v~CVR~S~dG~~lAsGSDD~---------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDR---------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeEEEECCCCCeEeeccCcc---------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 35567999999976655532 333333331 1100 0112222333456789999999
Q ss_pred eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 257 RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 257 ~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
.|+-.+.+ ..+.+++.. +.+ .++.+.+.. .-+-.+.|.|=|+ +.-++++ ..-.+|+.+ +-+
T Consensus 143 ~lvS~s~D--------nsViiwn~~-tF~--~~~vl~~H~----s~VKGvs~DP~Gky~ASqsdD--rtikvwrt~-dw~ 204 (942)
T KOG0973|consen 143 LLVSVSLD--------NSVIIWNAK-TFE--LLKVLRGHQ----SLVKGVSWDPIGKYFASQSDD--RTLKVWRTS-DWG 204 (942)
T ss_pred EEEEeccc--------ceEEEEccc-cce--eeeeeeccc----ccccceEECCccCeeeeecCC--ceEEEEEcc-cce
Confidence 99877733 347777766 453 366777775 6788999999998 5544443 344455532 235
Q ss_pred eEEEeccc------ccccCCCceeecc
Q 004735 336 EVLAIYSL------DAEFSRPLWVFGI 356 (732)
Q Consensus 336 ~~~~l~~~------~~~~~~~~w~~~~ 356 (732)
-.+.|+.. ..-+..+.|+|+.
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG 231 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDG 231 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCc
Confidence 55666522 2234567898843
No 302
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.00 E-value=0.088 Score=57.75 Aligned_cols=246 Identities=15% Similarity=0.107 Sum_probs=123.9
Q ss_pred ccccccccCCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCC
Q 004735 138 VRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
.|+.-..|-.++..+-+++.+......|.|-++|+.+. ...+.+... ....++.+.+|||+..+-.+.+..-. -
T Consensus 407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDktVk-f 480 (888)
T KOG0306|consen 407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH----DGAIWSISLSPDNKGFVTGSADKTVK-F 480 (888)
T ss_pred eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc----ccceeeeeecCCCCceEEecCCcEEE-E
Confidence 34443444444444556666667777888999999862 222333322 33457788999999865554433200 0
Q ss_pred CceeEEEEEEcCCCCccccEEc-------ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeE
Q 004735 218 NSTTEIVAIALNGQNIQEPKVL-------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV 290 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~l-------t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~ 290 (732)
| ..-++.+ ..|.. .+.| ..-.+.+...++||||+.||..--+. ...+|-+| +=+. ..
T Consensus 481 W--df~l~~~-~~gt~--~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn------TVkVyflD---tlKF--fl 544 (888)
T KOG0306|consen 481 W--DFKLVVS-VPGTQ--KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN------TVKVYFLD---TLKF--FL 544 (888)
T ss_pred E--eEEEEec-cCccc--ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC------eEEEEEec---ceee--ee
Confidence 0 1111222 22220 1111 11123345578999999988654222 33455444 2222 22
Q ss_pred EecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCC
Q 004735 291 CVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKN 369 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (732)
.+-|.. -.+-.+..|||++++.+... . .++-++-++=|.... +...+- ....+.|+ +..
T Consensus 545 sLYGHk----LPV~smDIS~DSklivTgSA-D--KnVKiWGLdFGDCHKS~fAHdD---------Svm~V~F~----P~~ 604 (888)
T KOG0306|consen 545 SLYGHK----LPVLSMDISPDSKLIVTGSA-D--KNVKIWGLDFGDCHKSFFAHDD---------SVMSVQFL----PKT 604 (888)
T ss_pred eecccc----cceeEEeccCCcCeEEeccC-C--CceEEeccccchhhhhhhcccC---------ceeEEEEc----ccc
Confidence 233443 45667789999996555433 2 234444444454332 222110 12345666 566
Q ss_pred EEEEEEEECCEEEEEEEECCCC-ceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 370 LIACSYRQNGRSYLGILDDFGH-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 370 ~l~~~s~~~g~~~ly~~~~~~~-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
+++|++.+++...-| |-+.= ..+.|......+..+ ..+++.+++.++. +..-++|.
T Consensus 605 ~~FFt~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh-D~sIRlwE 662 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH-DKSIRLWE 662 (888)
T ss_pred eeEEEecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEeccC-CceeEeee
Confidence 889999888765544 32211 233444444445555 4555556555543 33334444
No 303
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.99 E-value=0.062 Score=53.88 Aligned_cols=241 Identities=10% Similarity=-0.014 Sum_probs=133.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.++++...++.|+++|..+ ++.. -|... .....+.+|+..|+.++-...+- .+..+|.++-. +
T Consensus 121 ~~v~~as~d~tikv~D~~t--g~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsDl---------~~~LWd~~~~~-~ 184 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTET--GELERSLRGH----TDSVFDISFDASGKYLATCSSDL---------SAKLWDFDTFF-R 184 (406)
T ss_pred eEEEEecCCceEEEEEccc--hhhhhhhhcc----ccceeEEEEecCccEEEecCCcc---------chhheeHHHHH-H
Confidence 5677777788999999988 5543 23322 33468889999998755443322 24555665421 0
Q ss_pred ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 235 ~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
-.+.+......+..+.+=|-|.+|+-.+.+ ..|..++++ +|-. +..+.+.. ..+..++...||.|
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD--------~tik~We~~-tg~c--v~t~~~h~----ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRD--------NTIKAWECD-TGYC--VKTFPGHS----EWVRMVRVNQDGTI 249 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccc--------cceeEEecc-ccee--EEeccCch----HhEEEEEecCCeeE
Confidence 023333334456678888999888655422 236777887 6754 56666664 34456677788875
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeeccc--ceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~--~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
+..... ...-++|. ..+++.+.+. ..+..+.-..|.+... +..+....+++..+..+..+|+.-.+|-+. ++
T Consensus 250 ~As~s~-dqtl~vW~--~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg 324 (406)
T KOG0295|consen 250 IASCSN-DQTLRVWV--VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TG 324 (406)
T ss_pred EEecCC-CceEEEEE--eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--CC
Confidence 544433 33445554 4455332222 1111111122332111 001110001445677777888888887554 55
Q ss_pred c-eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 392 S-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 392 ~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
. +-.|...+..|.++ ..+++++++..+... .|-++|+..+.
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~ 367 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNLQ 367 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccce
Confidence 4 33455556678777 567777777776432 35555665554
No 304
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.13 Score=50.75 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=102.1
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
.....|+||.+.|+.+.... ..|.-++.+|.- .+.++-.. .-....++.-+|+..+ + ++ .
T Consensus 88 vS~LTynp~~rtLFav~n~p--------~~iVElt~~Gdl---irtiPL~g~~DpE~Ieyig~n~fvi-~--dE-----R 148 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKP--------AAIVELTKEGDL---IRTIPLTGFSDPETIEYIGGNQFVI-V--DE-----R 148 (316)
T ss_pred ccceeeCCCcceEEEecCCC--------ceEEEEecCCce---EEEecccccCChhHeEEecCCEEEE-E--eh-----h
Confidence 57889999999976665432 588888887654 55554211 1112345666666332 2 22 2
Q ss_pred ccEEEEEEecCCCceee-----eEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeE-EEecccc
Q 004735 272 KAELWVGYISENGDVYK-----RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLD 344 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~ 344 (732)
..+|+++.++.+++... +.+-.....+ .+....+|+|+.+ +++...+ .-..||.++-..... ..+....
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N--~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKN--KGFEGLAWDPVDHRLFVAKER--NPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCC--cCceeeecCCCCceEEEEEcc--CCcEEEEEecCCcccccccccCc
Confidence 34577777764433221 1111111112 5678999999988 6665554 556788776322111 1111111
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEE--eccCCCc-------eEEeeEeCCEEEE
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL--LDIPFTD-------IDNITLGNDCLFV 415 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~--lt~~~~~-------v~~~~~~~~~~~~ 415 (732)
.....-+..+.+.+.|-+ ..+.+++.+.++ ..|..++.++.-... |+.+... ...+.-++...+|
T Consensus 225 -~~~~~~f~~DvSgl~~~~---~~~~LLVLS~ES--r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 225 -TADRDLFVLDVSGLEFNA---ITNSLLVLSDES--RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred -ccccceEeeccccceecC---CCCcEEEEecCC--ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 111223334445555532 355666666543 346666766653333 3333221 2333444555556
Q ss_pred EEeCCC
Q 004735 416 EGASGV 421 (732)
Q Consensus 416 ~~~~~~ 421 (732)
+.+.++
T Consensus 299 IvSEPn 304 (316)
T COG3204 299 IVSEPN 304 (316)
T ss_pred EEecCC
Confidence 665443
No 305
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=96.96 E-value=0.046 Score=55.92 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=92.8
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEe-eceeecCCCCEEEEEEeccCCC---------CCC
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQD---------ALN 218 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~spdG~~l~~~~~~~~~~---------~~~ 218 (732)
+|...++.+++.+. .-.|+.++.++ +..+.+++..++....+ ++...+|+|. |+|+.....-. ...
T Consensus 121 ~f~~~ggdL~VaDA-YlGL~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 121 RFDKKGGDLYVADA-YLGLLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred EeccCCCeEEEEec-ceeeEEECCCC--CcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCC
Confidence 34444545555543 33599999987 78888887654444544 6678899664 45553322100 112
Q ss_pred ceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecC-CCC
Q 004735 219 STTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDP 297 (732)
Q Consensus 219 ~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~-~~~ 297 (732)
...+|+.+|..+.. .+.|.++-.|.++.+.|||+..+.|..... .+|..+=++ +.+.....++.. -.
T Consensus 197 ~~GRl~~YD~~tK~---~~VLld~L~F~NGlaLS~d~sfvl~~Et~~-------~ri~rywi~-g~k~gt~EvFa~~LP- 264 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKV---TKVLLDGLYFPNGLALSPDGSFVLVAETTT-------ARIKRYWIK-GPKAGTSEVFAEGLP- 264 (376)
T ss_pred CccceEEecCcccc---hhhhhhcccccccccCCCCCCEEEEEeecc-------ceeeeeEec-CCccCchhhHhhcCC-
Confidence 35788999998887 788888888999999999999999887332 234444444 222222344444 33
Q ss_pred CccccCcCceeCCCCc
Q 004735 298 TIVESPTEPKWSSKGE 313 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~ 313 (732)
+++..++-+++|.
T Consensus 265 ---G~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 265 ---GYPDNIRRDSTGH 277 (376)
T ss_pred ---CCCcceeECCCCC
Confidence 6667888888887
No 306
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.93 E-value=0.18 Score=49.78 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=95.2
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
.+..+|.||.+.|++|.+.. ..|+.+++++.- .+.+. .+.+-.-+.++.-+|+ ++..+ .+
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~--------~~i~els~~G~v---lr~i~l~g~~D~EgI~y~g~~~-~vl~~-Er------ 84 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP--------GEIYELSLDGKV---LRRIPLDGFGDYEGITYLGNGR-YVLSE-ER------ 84 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT--------TEEEEEETT--E---EEEEE-SS-SSEEEEEE-STTE-EEEEE-TT------
T ss_pred ccccEEcCCCCeEEEEECCC--------CEEEEEcCCCCE---EEEEeCCCCCCceeEEEECCCE-EEEEE-cC------
Confidence 57889999999988887653 589999987543 55553 3333344567776664 43343 22
Q ss_pred ccEEEEEEecCCCc-e--e---eeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEec--cCCeEEEecc
Q 004735 272 KAELWVGYISENGD-V--Y---KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIYS 342 (732)
Q Consensus 272 ~~~l~v~d~~~~g~-~--~---~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~--~~g~~~~l~~ 342 (732)
..+|++++++..++ . . ...+......+ .++..++|++.++ +++...+ .-..||.++. ..........
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N--~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGN--KGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---S--S--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCC--cceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccc
Confidence 34588888852222 1 1 11211111111 4578999999877 6655443 4566888775 2222221111
Q ss_pred cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE--EeccCC-------CceEEeeEeCCEE
Q 004735 343 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPF-------TDIDNITLGNDCL 413 (732)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~--~lt~~~-------~~v~~~~~~~~~~ 413 (732)
.... .........+.+.+-+ ..+.+++.|..+ ..|..+|.++.-+. .|..+. .....+..+.+.-
T Consensus 161 ~~~~-~~~~~~~d~S~l~~~p---~t~~lliLS~es--~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 161 QDLD-DDKLFVRDLSGLSYDP---RTGHLLILSDES--RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp HHHH--HT--SS---EEEEET---TTTEEEEEETTT--TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccc-cccceeccccceEEcC---CCCeEEEEECCC--CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 0000 0011111223444443 566777777543 45667776655333 333321 1234453333345
Q ss_pred EEEEeCCCCCcEEEEE
Q 004735 414 FVEGASGVEPSSVAKV 429 (732)
Q Consensus 414 ~~~~~~~~~~~~ly~~ 429 (732)
+|+.+. |...|++
T Consensus 235 LYIvsE---pNlfy~f 247 (248)
T PF06977_consen 235 LYIVSE---PNLFYRF 247 (248)
T ss_dssp EEEEET---TTEEEEE
T ss_pred EEEEcC---CceEEEe
Confidence 555554 3456654
No 307
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.93 E-value=0.0039 Score=68.23 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCCccC-Cccc-HHHHHHHHCCCEEEEEcCCCCCCCChhh--HHhhccCCCc----ccHHHHHHHHHHHH
Q 004735 495 PPLLVKSHGGPTSEAR-GILN-LSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGI----VDVNDCCSCATFLV 566 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~-~~~~-~~~~~l~~~G~~v~~~d~rG~~g~g~~~--~~~~~~~~~~----~~~~D~~~~i~~l~ 566 (732)
.|++|++-|- +.... .... ...+...+.|-.++++..|- ||.+. .+....+..- ..++|++..++++.
T Consensus 29 gpifl~~ggE-~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE--S-S-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 6888888553 22111 1111 23333344599999999984 33332 2222222221 23788888899988
Q ss_pred hcC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCC
Q 004735 567 GSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 609 (732)
Q Consensus 567 ~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d 609 (732)
.+. ..+..+++++|.|+||.++.++-. +|+.|.++++-+++..
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 654 345569999999999999999987 9999999999888653
No 308
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.90 E-value=0.023 Score=62.73 Aligned_cols=146 Identities=9% Similarity=0.068 Sum_probs=84.8
Q ss_pred eeEEECC-EEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 149 ~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
..+.++- +++.+...+|.|-.+|... +... .+.-+ .....+..+.....++...+ ...|.++
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~~l~l~-----~~~~~iv~hr~s~l~a~~~d---------df~I~vv 561 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKK--KVLKKSLRLG-----SSITGIVYHRVSDLLAIALD---------DFSIRVV 561 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCC--cceeeeeccC-----CCcceeeeeehhhhhhhhcC---------ceeEEEE
Confidence 3444433 6777777788888888875 3211 11111 01112222332222222222 2689999
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|..+.++ +|.+-..........||||||||+-.+. .+.|.++|+. +|.. +..+--. .-...+
T Consensus 562 D~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasm--------D~tIr~wDlp-t~~l--ID~~~vd-----~~~~sl 623 (910)
T KOG1539|consen 562 DVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASM--------DSTIRTWDLP-TGTL--IDGLLVD-----SPCTSL 623 (910)
T ss_pred Echhhhh--hHHhhccccceeeeEeCCCCcEEEEeec--------CCcEEEEecc-Ccce--eeeEecC-----Ccceee
Confidence 9988762 3344444556778999999999987773 3459999998 7876 4433222 224578
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEE
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~ 330 (732)
.+||+|.++.++.. ++..||.+
T Consensus 624 s~SPngD~LAT~Hv--d~~gIylW 645 (910)
T KOG1539|consen 624 SFSPNGDFLATVHV--DQNGIYLW 645 (910)
T ss_pred EECCCCCEEEEEEe--cCceEEEE
Confidence 89999994444443 33446655
No 309
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.89 E-value=0.044 Score=60.30 Aligned_cols=181 Identities=18% Similarity=0.165 Sum_probs=101.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
+.+.+...|..+-++.+++ .....+-.+ +....++.+|+|-|- +|.+..+.. ...||..|- ..
T Consensus 464 rfLlScSED~svRLWsl~t--~s~~V~y~G---H~~PVwdV~F~P~Gy--YFatas~D~-----tArLWs~d~--~~--- 526 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDT--WSCLVIYKG---HLAPVWDVQFAPRGY--YFATASHDQ-----TARLWSTDH--NK--- 526 (707)
T ss_pred cceeeccCCcceeeeeccc--ceeEEEecC---CCcceeeEEecCCce--EEEecCCCc-----eeeeeeccc--CC---
Confidence 4555555555444444443 222222122 234568888999984 444433321 367887665 23
Q ss_pred cEEcccCCCc-eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcE
Q 004735 236 PKVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 236 ~~~lt~~~~~-~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
+.++..+.-. +.-..|.|++.++|--+. ...+.++|+. +|.. ++++.+.. ..+..+++||+|+.
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~-~G~~--VRiF~GH~----~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVS-TGNS--VRIFTGHK----GPVTALAFSPCGRY 591 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCC--------CceEEEEEcC-CCcE--EEEecCCC----CceEEEEEcCCCce
Confidence 4455444322 223678999997764432 2347777888 7765 78898886 78899999999984
Q ss_pred EEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 315 FFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
+.+.+. .| .|..+|+.+|+.-. +....... .++.|.. +|+ ++.+...+..-.||
T Consensus 592 LaSg~e-d~--~I~iWDl~~~~~v~~l~~Ht~ti---------~SlsFS~---dg~-vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 592 LASGDE-DG--LIKIWDLANGSLVKQLKGHTGTI---------YSLSFSR---DGN-VLASGGADNSVRLW 646 (707)
T ss_pred Eeeccc-CC--cEEEEEcCCCcchhhhhcccCce---------eEEEEec---CCC-EEEecCCCCeEEEE
Confidence 334433 34 46667777765432 22222222 2334442 555 44454445556666
No 310
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.073 Score=50.92 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCCCCccCCcccHHHHHHHHC-C--CEEEEEcCCCCCCCChhhHHhhccC-CCcccHHH-HHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G--WAFVDVNYGGSTGYGREFRERLLGR-WGIVDVND-CCSCATFLV 566 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G--~~v~~~d~rG~~g~g~~~~~~~~~~-~~~~~~~D-~~~~i~~l~ 566 (732)
....++++++.|.|+.. ..+...+..|... + ..+..+-.-|..+-..+..+..... -.....+| +..-++++.
T Consensus 26 ~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik 103 (301)
T KOG3975|consen 26 GEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIK 103 (301)
T ss_pred CCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHH
Confidence 45679999999987654 2223334444332 2 4466665544333222212111111 01111233 334455655
Q ss_pred hcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 567 GSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 567 ~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
+. .....||.|+|||-|+|+.+.++.
T Consensus 104 ~~-~Pk~~ki~iiGHSiGaYm~Lqil~ 129 (301)
T KOG3975|consen 104 EY-VPKDRKIYIIGHSIGAYMVLQILP 129 (301)
T ss_pred Hh-CCCCCEEEEEecchhHHHHHHHhh
Confidence 54 334579999999999999999986
No 311
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.88 E-value=0.038 Score=52.51 Aligned_cols=146 Identities=10% Similarity=0.035 Sum_probs=88.8
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..+.-+.+...++.+-++|..++ ...+.|... ......-+|+||+.| .+.. -..|-.+|..+-.
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTg-t~v~sL~~~-----s~VtSlEvs~dG~il-Tia~---------gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTG-TEVQSLEFN-----SPVTSLEVSQDGRIL-TIAY---------GSSVKFWDAKSFG 216 (334)
T ss_pred ccCceEEeeccCCceEEEEeccC-cEEEEEecC-----CCCcceeeccCCCEE-EEec---------CceeEEecccccc
Confidence 34444445456677888898873 334444432 233566799999964 3322 1466677777633
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEe-cCCCCCccccCcCceeCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSK 311 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~-~~~~~~~~~~~~~~~wspD 311 (732)
+..--.-+..+....++|+-. + |+...+ ...+|.+|.. +|+- +-.. .+.. +.+..+.||||
T Consensus 217 ---~lKs~k~P~nV~SASL~P~k~-~-fVaGge------d~~~~kfDy~-TgeE--i~~~nkgh~----gpVhcVrFSPd 278 (334)
T KOG0278|consen 217 ---LLKSYKMPCNVESASLHPKKE-F-FVAGGE------DFKVYKFDYN-TGEE--IGSYNKGHF----GPVHCVRFSPD 278 (334)
T ss_pred ---ceeeccCccccccccccCCCc-e-EEecCc------ceEEEEEecc-CCce--eeecccCCC----CceEEEEECCC
Confidence 211122234456678899863 4 454233 3458999998 7754 3333 4443 56778899999
Q ss_pred CcEEEEEeccCCeeeEEEEecc
Q 004735 312 GELFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 312 g~l~~~~~~~~g~~~l~~~d~~ 333 (732)
|.+|.+... .|..+||...+.
T Consensus 279 GE~yAsGSE-DGTirlWQt~~~ 299 (334)
T KOG0278|consen 279 GELYASGSE-DGTIRLWQTTPG 299 (334)
T ss_pred CceeeccCC-CceEEEEEecCC
Confidence 987766555 788889887654
No 312
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.88 E-value=0.059 Score=54.60 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=98.7
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC---CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.|.+-+|.++.+-..|..|.++.+..+ +..+.|+... .++.-+.+-..|+|--.-++++...+ +.+.+
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--------n~v~i 158 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--------NTVSI 158 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccCC--------ceEEE
Confidence 355557777777666776777766542 4444444210 01245667788999766666554422 68889
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
+++.+|+ ...-...++.+.+..|+-||.+|+-+. ....|.++|.. .|++.... ..... .....
T Consensus 159 Wnv~tge---ali~l~hpd~i~S~sfn~dGs~l~Ttc--------kDKkvRv~dpr-~~~~v~e~-~~heG----~k~~R 221 (472)
T KOG0303|consen 159 WNVGTGE---ALITLDHPDMVYSMSFNRDGSLLCTTC--------KDKKVRVIDPR-RGTVVSEG-VAHEG----AKPAR 221 (472)
T ss_pred EeccCCc---eeeecCCCCeEEEEEeccCCceeeeec--------ccceeEEEcCC-CCcEeeec-ccccC----CCcce
Confidence 9999987 322234677788899999999988766 23458999987 77763222 11121 34567
Q ss_pred ceeCCCCcEEEEEec-cCCeeeEEEEeccC
Q 004735 306 PKWSSKGELFFVTDR-KNGFWNLHKWIESN 334 (732)
Q Consensus 306 ~~wspDg~l~~~~~~-~~g~~~l~~~d~~~ 334 (732)
..|-.+|. ++++.- .....++.++|+.+
T Consensus 222 aifl~~g~-i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 222 AIFLASGK-IFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eEEeccCc-eeeeccccccccceeccCccc
Confidence 88999987 444332 13345566667654
No 313
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.85 E-value=0.16 Score=52.21 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=104.4
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
.+++...+-.|+++..... ..+..+-+. .........+|.|.+++....+ .....-|..+|.. .
T Consensus 275 ~v~~aSad~~i~vws~~~~-s~~~~~~~h----~~~V~~ls~h~tgeYllsAs~d---------~~w~Fsd~~~g~~--l 338 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLS-SEPTSSRPH----EEPVTGLSLHPTGEYLLSASND---------GTWAFSDISSGSQ--L 338 (506)
T ss_pred heeecCCcceEEeeccccc-cCccccccc----cccceeeeeccCCcEEEEecCC---------ceEEEEEccCCcE--E
Confidence 3444445556777766541 333333332 2234556688999987665442 2333345555540 2
Q ss_pred EEcccC-C-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 237 KVLVSG-S-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 237 ~~lt~~-~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
.+.... . --+....|.|||- .|.... .++.|-++|+. ++. +...+++.. +-+..+.|+.+|-
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgL--ifgtgt------~d~~vkiwdlk-s~~--~~a~Fpght----~~vk~i~FsENGY~ 403 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGL--IFGTGT------PDGVVKIWDLK-SQT--NVAKFPGHT----GPVKAISFSENGYW 403 (506)
T ss_pred EEEeeccccceeEEeeEcCCce--EEeccC------CCceEEEEEcC-Ccc--ccccCCCCC----CceeEEEeccCceE
Confidence 222221 1 1245678999995 344322 24568899998 554 356677765 6778899999996
Q ss_pred EEEEEeccCCeeeEEEEeccCCe-EEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCC
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNE-VLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 391 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~-~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~ 391 (732)
|+..+++ + .+..+|+..-+ .+.+. ++..+ ..++.|-. .|..+... ...-+||.+.-.++
T Consensus 404 Lat~add--~--~V~lwDLRKl~n~kt~~l~~~~~---------v~s~~fD~---SGt~L~~~---g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 404 LATAADD--G--SVKLWDLRKLKNFKTIQLDEKKE---------VNSLSFDQ---SGTYLGIA---GSDLQVYICKKKTK 464 (506)
T ss_pred EEEEecC--C--eEEEEEehhhcccceeecccccc---------ceeEEEcC---CCCeEEee---cceeEEEEEecccc
Confidence 4444443 3 36777775432 22222 11111 22333321 44444443 33467888888888
Q ss_pred ceEEecc
Q 004735 392 SLSLLDI 398 (732)
Q Consensus 392 ~~~~lt~ 398 (732)
+++.+..
T Consensus 465 ~W~~~~~ 471 (506)
T KOG0289|consen 465 SWTEIKE 471 (506)
T ss_pred cceeeeh
Confidence 8877654
No 314
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.84 E-value=0.39 Score=49.49 Aligned_cols=224 Identities=12% Similarity=0.119 Sum_probs=114.9
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
+..+.++|... +..-.+-.+ ......+..++|+-..++-... ...|+++....... +..+....
T Consensus 240 d~~av~~d~~s--~q~l~~~~G---h~kki~~v~~~~~~~~v~~aSa---------d~~i~vws~~~~s~--~~~~~~h~ 303 (506)
T KOG0289|consen 240 DKTAVLFDKPS--NQILATLKG---HTKKITSVKFHKDLDTVITASA---------DEIIRVWSVPLSSE--PTSSRPHE 303 (506)
T ss_pred CCceEEEecch--hhhhhhccC---cceEEEEEEeccchhheeecCC---------cceEEeeccccccC--cccccccc
Confidence 33566666654 222222222 2456677788998876433222 13555554433220 33333334
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 323 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g 323 (732)
+.+......|.|.+|...+ ++ ......|+. +|.. +........+ ..+...++.||| ++|.+...++
T Consensus 304 ~~V~~ls~h~tgeYllsAs-~d-------~~w~Fsd~~-~g~~--lt~vs~~~s~--v~~ts~~fHpDg-Lifgtgt~d~ 369 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSAS-ND-------GTWAFSDIS-SGSQ--LTVVSDETSD--VEYTSAAFHPDG-LIFGTGTPDG 369 (506)
T ss_pred ccceeeeeccCCcEEEEec-CC-------ceEEEEEcc-CCcE--EEEEeecccc--ceeEEeeEcCCc-eEEeccCCCc
Confidence 4556667789999987766 22 223344666 6643 3433332111 456788999999 5555544345
Q ss_pred eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCC-CceEEeccC-CC
Q 004735 324 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIP-FT 401 (732)
Q Consensus 324 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~-~~~~~lt~~-~~ 401 (732)
. |-.+|+..+. .+..... ..+| ...+.|. ++++.+.+...++...|| |+.. ...+.++.+ ..
T Consensus 370 ~--vkiwdlks~~--~~a~Fpg-ht~~-----vk~i~Fs----ENGY~Lat~add~~V~lw--DLRKl~n~kt~~l~~~~ 433 (506)
T KOG0289|consen 370 V--VKIWDLKSQT--NVAKFPG-HTGP-----VKAISFS----ENGYWLATAADDGSVKLW--DLRKLKNFKTIQLDEKK 433 (506)
T ss_pred e--EEEEEcCCcc--ccccCCC-CCCc-----eeEEEec----cCceEEEEEecCCeEEEE--Eehhhcccceeeccccc
Confidence 4 4445665543 2221111 1122 2345565 677777777777765566 4432 233334433 22
Q ss_pred ceEEee-EeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 402 DIDNIT-LGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 402 ~v~~~~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
.+..+. +..+.++.+++ ....+|.++-.+++.
T Consensus 434 ~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIAG---SDLQVYICKKKTKSW 466 (506)
T ss_pred cceeEEEcCCCCeEEeec---ceeEEEEEecccccc
Confidence 466663 33445554442 234677776555554
No 315
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.83 E-value=0.41 Score=51.27 Aligned_cols=234 Identities=9% Similarity=-0.006 Sum_probs=111.2
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 151 ~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
...++.+++.. .++.|+.+|..+ |+.. +..... .....+. .++..+++... ...||.+|.+
T Consensus 62 ~v~~~~v~v~~-~~g~v~a~d~~t--G~~~W~~~~~~----~~~~~p~--v~~~~v~v~~~---------~g~l~ald~~ 123 (377)
T TIGR03300 62 AVAGGKVYAAD-ADGTVVALDAET--GKRLWRVDLDE----RLSGGVG--ADGGLVFVGTE---------KGEVIALDAE 123 (377)
T ss_pred EEECCEEEEEC-CCCeEEEEEccC--CcEeeeecCCC----CcccceE--EcCCEEEEEcC---------CCEEEEEECC
Confidence 34455555543 557899999876 5432 212110 0112333 35666554332 2589999998
Q ss_pred CCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 230 GQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 230 ~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
+|+ +.- ...+......|.. ++.++++.. ....|+.+|.+ +|+..+........ ........|..
T Consensus 124 tG~---~~W~~~~~~~~~~~p~v--~~~~v~v~~--------~~g~l~a~d~~-tG~~~W~~~~~~~~-~~~~~~~sp~~ 188 (377)
T TIGR03300 124 DGK---ELWRAKLSSEVLSPPLV--ANGLVVVRT--------NDGRLTALDAA-TGERLWTYSRVTPA-LTLRGSASPVI 188 (377)
T ss_pred CCc---EeeeeccCceeecCCEE--ECCEEEEEC--------CCCeEEEEEcC-CCceeeEEccCCCc-eeecCCCCCEE
Confidence 887 321 1112223334444 344554432 23459999998 78764433222211 00001123333
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccC--CCcee-ecccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFS--RPLWV-FGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~--~~~w~-~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
. ++.+++.. . . ..++.+|+.+|+..--........ ..... .-...... .++.+|+.+. +| .|+.
T Consensus 189 ~-~~~v~~~~-~-~--g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-----~~~~vy~~~~-~g--~l~a 255 (377)
T TIGR03300 189 A-DGGVLVGF-A-G--GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-----DGGQVYAVSY-QG--RVAA 255 (377)
T ss_pred E-CCEEEEEC-C-C--CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-----ECCEEEEEEc-CC--EEEE
Confidence 2 34344332 2 2 358889998886432111000000 00000 00000011 4456666543 33 5888
Q ss_pred EECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 386 LDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 386 ~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
++.++|+..--... .....+...++.+++.. ....|+.+|..+|+
T Consensus 256 ~d~~tG~~~W~~~~-~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 256 LDLRSGRVLWKRDA-SSYQGPAVDDNRLYVTD----ADGVVVALDRRSGS 300 (377)
T ss_pred EECCCCcEEEeecc-CCccCceEeCCEEEEEC----CCCeEEEEECCCCc
Confidence 89988875432221 11222234456655443 23579999998886
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.83 E-value=0.94 Score=48.50 Aligned_cols=269 Identities=13% Similarity=0.080 Sum_probs=127.2
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEeC
Q 004735 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSI 172 (732)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~ 172 (732)
.|... ++.+|.... .+ .++..+..+| +..+-...+.. + ......+++.+++. ..++.||.+|.
T Consensus 60 ~p~v~-~~~v~v~~~----~g--~v~a~d~~tG-~~~W~~~~~~~----~----~~~p~v~~~~v~v~-~~~g~l~ald~ 122 (377)
T TIGR03300 60 QPAVA-GGKVYAADA----DG--TVVALDAETG-KRLWRVDLDER----L----SGGVGADGGLVFVG-TEKGEVIALDA 122 (377)
T ss_pred ceEEE-CCEEEEECC----CC--eEEEEEccCC-cEeeeecCCCC----c----ccceEEcCCEEEEE-cCCCEEEEEEC
Confidence 34444 677776543 12 3667766555 44333221100 0 11233445555544 45678999999
Q ss_pred CCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-ccc-CCC----c
Q 004735 173 DSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVS-GSD----F 245 (732)
Q Consensus 173 ~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~-~~~----~ 245 (732)
++ |+.. +.... ......+.. ++..+++... ...|+.+|.++|+ ..- ... ... .
T Consensus 123 ~t--G~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~---------~g~l~a~d~~tG~---~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 123 ED--GKELWRAKLS----SEVLSPPLV--ANGLVVVRTN---------DGRLTALDAATGE---RLWTYSRVTPALTLRG 182 (377)
T ss_pred CC--CcEeeeeccC----ceeecCCEE--ECCEEEEECC---------CCeEEEEEcCCCc---eeeEEccCCCceeecC
Confidence 77 5432 22211 112223333 3444444322 2589999998887 321 111 111 1
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC----c-cccCcCceeCCCCcEEEEEec
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----I-VESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~----~-~~~~~~~~wspDg~l~~~~~~ 320 (732)
...|... |+ .+++.. ....++.+|+. +|+..+...+...... . ......|... ++.+|+.+ .
T Consensus 183 ~~sp~~~-~~-~v~~~~--------~~g~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~-~ 249 (377)
T TIGR03300 183 SASPVIA-DG-GVLVGF--------AGGKLVALDLQ-TGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVS-Y 249 (377)
T ss_pred CCCCEEE-CC-EEEEEC--------CCCEEEEEEcc-CCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEE-c
Confidence 1233332 33 443332 23458999988 7876443322111000 0 0001233332 33355443 3
Q ss_pred cCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEE-ecc-
Q 004735 321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL-LDI- 398 (732)
Q Consensus 321 ~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~-lt~- 398 (732)
.| .|+.+|+++|+..--.+. .....| .. .++.+|+.+ ....|+.+|.++|+..- ...
T Consensus 250 -~g--~l~a~d~~tG~~~W~~~~-~~~~~p---------~~-----~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~ 308 (377)
T TIGR03300 250 -QG--RVAALDLRSGRVLWKRDA-SSYQGP---------AV-----DDNRLYVTD---ADGVVVALDRRSGSELWKNDEL 308 (377)
T ss_pred -CC--EEEEEECCCCcEEEeecc-CCccCc---------eE-----eCCEEEEEC---CCCeEEEEECCCCcEEEccccc
Confidence 23 588999988865432211 011111 11 566777664 23468888988886432 111
Q ss_pred CCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 399 PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 399 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...........++.++ +.+. ...||.+|..+|+.
T Consensus 309 ~~~~~ssp~i~g~~l~-~~~~---~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 309 KYRQLTAPAVVGGYLV-VGDF---EGYLHWLSREDGSF 342 (377)
T ss_pred cCCccccCEEECCEEE-EEeC---CCEEEEEECCCCCE
Confidence 1111222223445444 4332 24699999888874
No 317
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.83 E-value=0.28 Score=51.47 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCc
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTI 299 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~ 299 (732)
...+++|.++.. ..++-...+...-.++||||..||.-+ .+..||++-++.+|. ........+
T Consensus 428 G~w~V~d~e~~~---lv~~~~d~~~ls~v~ysp~G~~lAvgs--------~d~~iyiy~Vs~~g~~y~r~~k~~g----- 491 (626)
T KOG2106|consen 428 GRWFVLDTETQD---LVTIHTDNEQLSVVRYSPDGAFLAVGS--------HDNHIYIYRVSANGRKYSRVGKCSG----- 491 (626)
T ss_pred ceEEEEecccce---eEEEEecCCceEEEEEcCCCCEEEEec--------CCCeEEEEEECCCCcEEEEeeeecC-----
Confidence 678889988755 444444466677789999999999776 233477777775553 322222222
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEE
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHK 329 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~ 329 (732)
..+....||+|++. +.++. .++.-||.
T Consensus 492 -s~ithLDwS~Ds~~-~~~~S-~d~eiLyW 518 (626)
T KOG2106|consen 492 -SPITHLDWSSDSQF-LVSNS-GDYEILYW 518 (626)
T ss_pred -ceeEEeeecCCCce-EEecc-CceEEEEE
Confidence 34567889999973 34444 34444444
No 318
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.16 Score=50.00 Aligned_cols=143 Identities=12% Similarity=0.027 Sum_probs=75.4
Q ss_pred CCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc
Q 004735 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS 241 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~ 241 (732)
-.+|++..+|+.+- +-.+.|+.. -......+||+||++|+-.+.+ ..+-.+|+-.|.. ..++-.
T Consensus 42 c~nG~vvI~D~~T~-~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D---------~si~lwDl~~gs~--l~rirf 105 (405)
T KOG1273|consen 42 CANGRVVIYDFDTF-RIARMLSAH----VRPITSLCWSRDGRKLLTSSRD---------WSIKLWDLLKGSP--LKRIRF 105 (405)
T ss_pred ccCCcEEEEEcccc-chhhhhhcc----ccceeEEEecCCCCEeeeecCC---------ceeEEEeccCCCc--eeEEEc
Confidence 35778999999872 233444443 2345778899999997765542 4677788887761 333321
Q ss_pred CCCceeccccCCCCCeEEEEe-ccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC-CccccCcCceeCCCCcEEEEEe
Q 004735 242 GSDFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 242 ~~~~~~~p~~SPDG~~la~~~-~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDg~l~~~~~ 319 (732)
...+....|-|-.+..+.+. ++.. -++.+++ +++. ++++..+. +-........+.+-|+.+++..
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~s--------p~vi~~s-~~~h---~~Lp~d~d~dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEES--------PVVIDFS-DPKH---SVLPKDDDGDLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecCC--------cEEEEec-CCce---eeccCCCccccccccccccccCCCCEEEEec
Confidence 22233445666433333332 2221 4666776 4433 33333221 1001222234777788555554
Q ss_pred ccCCeeeEEEEeccCCe
Q 004735 320 RKNGFWNLHKWIESNNE 336 (732)
Q Consensus 320 ~~~g~~~l~~~d~~~g~ 336 (732)
. .|+ |..++.++-+
T Consensus 173 s-KGk--llv~~a~t~e 186 (405)
T KOG1273|consen 173 S-KGK--LLVYDAETLE 186 (405)
T ss_pred C-cce--EEEEecchhe
Confidence 4 455 4445555543
No 319
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.78 E-value=0.24 Score=51.50 Aligned_cols=246 Identities=13% Similarity=0.025 Sum_probs=131.3
Q ss_pred CCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 146 g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+..+++|..+ .++.....+|.+-+++.++ .....|... .-......|+-+|.+|+...-+ ..+.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~H----kgPI~slKWnk~G~yilS~~vD---------~tti 301 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQH----KGPIFSLKWNKKGTYILSGGVD---------GTTI 301 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhcc----CCceEEEEEcCCCCEEEeccCC---------ccEE
Confidence 4566777633 4444555677777788775 555555544 3345667899999997655332 4667
Q ss_pred EEEcCCCCccccEEcccCCCce-eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 225 AIALNGQNIQEPKVLVSGSDFY-AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~-~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
++|..+|+ ..+...-.... -...|=-+.+ |+... ....|+|+-+.. .. ....+.+.. +.+
T Consensus 302 lwd~~~g~---~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~-~~--P~~t~~GH~----g~V 362 (524)
T KOG0273|consen 302 LWDAHTGT---VKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGE-DR--PVKTFIGHH----GEV 362 (524)
T ss_pred EEeccCce---EEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecC-CC--cceeeeccc----Cce
Confidence 78988887 65554322111 1123432222 22212 233477777762 22 244555665 778
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEE
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 383 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~l 383 (732)
..+.|.|-|.|+.++.+ .+.-.||-..-. +....+-....++-...|+|... ...-+ ..+..+.++..++...+
T Consensus 363 ~alk~n~tg~LLaS~Sd-D~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~-v~~n~---~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSD-DGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGP-VTSNP---NMNLMLASASFDSTVKL 436 (524)
T ss_pred EEEEECCCCceEEEecC-CCeeEeeecCCC-cchhhhhhhccceeeEeecCCCC-ccCCC---cCCceEEEeecCCeEEE
Confidence 89999999996656555 566667654221 21222222222223345554211 11101 23344445555666666
Q ss_pred EEEECCCC-ceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 384 GILDDFGH-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 384 y~~~~~~~-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
| |...+ .+..++.+...|.++ ..++++++..+ +.++ -+..++..++++
T Consensus 437 w--dv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG-s~dg--~V~iws~~~~~l 486 (524)
T KOG0273|consen 437 W--DVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG-SLDG--CVHIWSTKTGKL 486 (524)
T ss_pred E--EccCCceeEeeccCCCceEEEEecCCCcEEEec-CCCC--eeEeccccchhe
Confidence 6 44444 456677777778888 34555554433 3332 344444455553
No 320
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.77 E-value=0.012 Score=61.84 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=55.5
Q ss_pred EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEE
Q 004735 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 238 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
+..-+.+...+.+|||||++||.++ ...-|.++|.+ +-++ +-++... .+..--+.|||||+++.+
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VS--------qDGfLRvF~fd-t~eL--lg~mkSY----FGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVS--------QDGFLRIFDFD-TQEL--LGVMKSY----FGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEe--------cCceEEEeecc-HHHH--HHHHHhh----ccceEEEEEcCCccEEEe
Confidence 3344444667789999999999998 23448888887 4332 1111111 145567899999995555
Q ss_pred EeccCCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 318 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
... .+--.+|.+. +.|.+..+. +...|+.
T Consensus 350 GGE-DDLVtVwSf~----erRVVARGq---GHkSWVs 378 (636)
T KOG2394|consen 350 GGE-DDLVTVWSFE----ERRVVARGQ---GHKSWVS 378 (636)
T ss_pred cCC-cceEEEEEec----cceEEEecc---cccccee
Confidence 444 4445555542 223333332 4556764
No 321
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.75 E-value=0.0026 Score=68.33 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=62.2
Q ss_pred CCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHH
Q 004735 510 RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 589 (732)
Q Consensus 510 ~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~ 589 (732)
...|..+++.|.+.||.+ ..|.+|.+ .+|+.... ....++++.+.++.+.++. ...++.|+||||||.+++
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g~g---YDwR~~~~---~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFGFG---YDFRQSNR---LPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCcccCC---CCcccccc---HHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 356777889999999866 67887543 33433210 0122567777777776653 246899999999999999
Q ss_pred HHHh-CCC----cceEEEeecCcC
Q 004735 590 AALA-FRD----TFKAGASLYGVA 608 (732)
Q Consensus 590 ~~~~-~p~----~~~a~v~~~~~~ 608 (732)
.++. +|+ .++..|++++..
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCCC
Confidence 8887 765 367777776654
No 322
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.71 E-value=0.034 Score=56.44 Aligned_cols=262 Identities=12% Similarity=0.050 Sum_probs=134.1
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccc--ccccCCceeEEE--CCEEEEEeCCCC
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIF--GDTVIFSNYKDQ 165 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~--~~~~g~~~~~~~--~~~i~f~~~~~~ 165 (732)
+..++|.| |++|.--. ..|...||.-.. ++.+.. .|++-+.+..++ +..+ ++.+.++
T Consensus 99 V~~v~WtPeGRRLltgs----~SGEFtLWNg~~-------------fnFEtilQaHDs~Vr~m~ws~~g~wm-iSgD~gG 160 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS----QSGEFTLWNGTS-------------FNFETILQAHDSPVRTMKWSHNGTWM-ISGDKGG 160 (464)
T ss_pred eeeEEEcCCCceeEeec----ccccEEEecCce-------------eeHHHHhhhhcccceeEEEccCCCEE-EEcCCCc
Confidence 45788998 77765432 246666665311 111111 122223333333 3333 3444455
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD- 244 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~- 244 (732)
-|-.+++.- ...+.+... ......+.+|||.... +.++.++ +.|-++|..-.+. .++| .+.+
T Consensus 161 ~iKyWqpnm--nnVk~~~ah---h~eaIRdlafSpnDsk-F~t~SdD--------g~ikiWdf~~~ke--e~vL-~GHgw 223 (464)
T KOG0284|consen 161 MIKYWQPNM--NNVKIIQAH---HAEAIRDLAFSPNDSK-FLTCSDD--------GTIKIWDFRMPKE--ERVL-RGHGW 223 (464)
T ss_pred eEEecccch--hhhHHhhHh---hhhhhheeccCCCCce-eEEecCC--------CeEEEEeccCCch--hhee-ccCCC
Confidence 555566543 223322222 1245678889995554 3333333 5677777665440 4455 4443
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCC
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 323 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g 323 (732)
-+....|.|--. |.+...++ +-+-++|.. +|.. +..+.+.. ..+-...|+++|. |+-.+.+
T Consensus 224 dVksvdWHP~kg-LiasgskD-------nlVKlWDpr-Sg~c--l~tlh~HK----ntVl~~~f~~n~N~Llt~skD--- 285 (464)
T KOG0284|consen 224 DVKSVDWHPTKG-LIASGSKD-------NLVKLWDPR-SGSC--LATLHGHK----NTVLAVKFNPNGNWLLTGSKD--- 285 (464)
T ss_pred CcceeccCCccc-eeEEccCC-------ceeEeecCC-Ccch--hhhhhhcc----ceEEEEEEcCCCCeeEEccCC---
Confidence 345678999755 44444232 246777887 6643 44444444 6678899999998 4433322
Q ss_pred eeeEEEEeccC-CeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc-CCC
Q 004735 324 FWNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-PFT 401 (732)
Q Consensus 324 ~~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~-~~~ 401 (732)
..+-++|+.+ .+....-..+.++....|+|. ...|+.+...+|....|.+.+.. .+-.+.. .+.
T Consensus 286 -~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~------------~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~AHd~ 351 (464)
T KOG0284|consen 286 -QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL------------NESLFTSGGSDGSVVHWVVGLEE-PLGEIPPAHDG 351 (464)
T ss_pred -ceEEEEehhHhHHHHHhhcchhhheeeccccc------------cccceeeccCCCceEEEeccccc-cccCCCccccc
Confidence 3566777764 223333234556667788873 33455555556655555554211 1111111 133
Q ss_pred ceEEe-eEeCCEEEEEEeC
Q 004735 402 DIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 402 ~v~~~-~~~~~~~~~~~~~ 419 (732)
.|-++ ..+=+.+++.+++
T Consensus 352 ~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 352 EIWSLAYHPLGHILATGSN 370 (464)
T ss_pred ceeeeeccccceeEeecCC
Confidence 44454 3455666666443
No 323
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.70 E-value=0.058 Score=54.65 Aligned_cols=207 Identities=8% Similarity=-0.011 Sum_probs=112.1
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEE
Q 004735 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (732)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~ 169 (732)
.-.+.|.| .+.+--.-+ |+-...+|..... +..+.++..-.........-|...|.+....++++...+..+.+
T Consensus 84 vLDi~w~PfnD~vIASgS---eD~~v~vW~IPe~--~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGS---EDTKVMVWQIPEN--GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred ccccccCccCCceeecCC---CCceEEEEECCCc--ccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 45788999 666654432 4466666665433 34444442110111111112344555566678888888889999
Q ss_pred EeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-C-cee
Q 004735 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-D-FYA 247 (732)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~-~-~~~ 247 (732)
+++.++ ...-.|. . .......+|+-||.+++.++.+ ..|-++|..+++ +..-.... + ...
T Consensus 159 Wnv~tg-eali~l~-h----pd~i~S~sfn~dGs~l~TtckD---------KkvRv~dpr~~~---~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 159 WNVGTG-EALITLD-H----PDMVYSMSFNRDGSLLCTTCKD---------KKVRVIDPRRGT---VVSEGVAHEGAKPA 220 (472)
T ss_pred EeccCC-ceeeecC-C----CCeEEEEEeccCCceeeeeccc---------ceeEEEcCCCCc---EeeecccccCCCcc
Confidence 999883 2233344 2 3556677899999997777664 367788888776 32221111 1 112
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeE
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 327 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l 327 (732)
...|-.||+ |+-+.+... ...++-+.|.+.-.+..-...+... .++-.|.|.+|.+++|+...+.+..+-
T Consensus 221 Raifl~~g~-i~tTGfsr~----seRq~aLwdp~nl~eP~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 221 RAIFLASGK-IFTTGFSRM----SERQIALWDPNNLEEPIALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred eeEEeccCc-eeeeccccc----cccceeccCcccccCcceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEE
Confidence 345667777 544433321 2344555554411111111222222 456678899998877776663444444
Q ss_pred EEE
Q 004735 328 HKW 330 (732)
Q Consensus 328 ~~~ 330 (732)
|.+
T Consensus 291 yEi 293 (472)
T KOG0303|consen 291 FEI 293 (472)
T ss_pred EEe
Confidence 444
No 324
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.14 Score=50.56 Aligned_cols=118 Identities=8% Similarity=-0.087 Sum_probs=70.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
....||+-|..|+.-+. +..|.++|..+-.+ .+.|+..-..+...+||+||++|.-.+. ..
T Consensus 27 ~~~~Fs~~G~~lAvGc~---------nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~--------D~ 87 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA---------NGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSR--------DW 87 (405)
T ss_pred ceEEeccCcceeeeecc---------CCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecC--------Cc
Confidence 45679999998776665 25788889988651 2334433345667899999999876552 23
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.+-.+|+. .|..- ..+.-. .-+....|.|-.+ .++.+.- .... ++++...++.+.|.
T Consensus 88 si~lwDl~-~gs~l--~rirf~-----spv~~~q~hp~k~n~~va~~~-~~sp--~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 88 SIKLWDLL-KGSPL--KRIRFD-----SPVWGAQWHPRKRNKCVATIM-EESP--VVIDFSDPKHSVLP 145 (405)
T ss_pred eeEEEecc-CCCce--eEEEcc-----CccceeeeccccCCeEEEEEe-cCCc--EEEEecCCceeecc
Confidence 37788988 67652 222222 2245667777554 4444433 2223 33444445555554
No 325
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.63 E-value=0.032 Score=57.93 Aligned_cols=145 Identities=8% Similarity=-0.003 Sum_probs=89.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
...|+.+...++.|+++++-+..+..|..... .....+.+|+.+|+.++-+.-+ ..|-.+|+++|+
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDtETG~- 291 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD---------RFLKLWDTETGQ- 291 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---------eeeeeeccccce-
Confidence 44678888888899999986410222222222 3445778899999986555432 467788999997
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
..+-........-..+-||+..++++... ..+|..+|+. +|++ +......- +.+....|-++|+
T Consensus 292 --~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiR-s~kv--vqeYd~hL----g~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 292 --VLSRFHLDKVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIR-SGKV--VQEYDRHL----GAILDITFVDEGR 355 (503)
T ss_pred --EEEEEecCCCceeeecCCCCCcEEEEecC-------CCcEEEEecc-chHH--HHHHHhhh----hheeeeEEccCCc
Confidence 44333323333446788999888777633 3458888998 7775 22222222 4566788889998
Q ss_pred -EEEEEeccCCeeeEEEE
Q 004735 314 -LFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~ 330 (732)
.+-+++. +...||.+
T Consensus 356 rFissSDd--ks~riWe~ 371 (503)
T KOG0282|consen 356 RFISSSDD--KSVRIWEN 371 (503)
T ss_pred eEeeeccC--ccEEEEEc
Confidence 4444443 55555544
No 326
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.26 Score=52.74 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=114.0
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
..+.+++......+.+.++|..+. .....+..+ ..-....++|+|+.++...... . ...+.++|..++
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~-~-----~~~vsvid~~t~ 150 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGN-G-----NNTVSVIDAATN 150 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCccc-ceeeEeeec-----cCCceEEECCCCCEEEEEeccc-C-----CceEEEEeCCCC
Confidence 344567666656678999986641 111111211 1225678999999955543321 1 368999999887
Q ss_pred CccccEEc-ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEE--ecCCCCCccccCcCcee
Q 004735 232 NIQEPKVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--VAGFDPTIVESPTEPKW 308 (732)
Q Consensus 232 ~~~~~~~l-t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~--~~~~~~~~~~~~~~~~w 308 (732)
+ +... ..+.. ....+++|||++++-.. . ....|.++|.+ +........ .-... .+.....+
T Consensus 151 ~---~~~~~~vG~~-P~~~a~~p~g~~vyv~~-~------~~~~v~vi~~~-~~~v~~~~~~~~~~~~----~~P~~i~v 214 (381)
T COG3391 151 K---VTATIPVGNT-PTGVAVDPDGNKVYVTN-S------DDNTVSVIDTS-GNSVVRGSVGSLVGVG----TGPAGIAV 214 (381)
T ss_pred e---EEEEEecCCC-cceEEECCCCCeEEEEe-c------CCCeEEEEeCC-CcceeccccccccccC----CCCceEEE
Confidence 6 3332 22221 24568899999886554 1 24569999876 333321000 01111 45568899
Q ss_pred CCCCcEEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 309 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 309 spDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
++||+.+|+.+.......+..+|..++...... ..... .| ......| +++.+|..... ...++..|
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~------~~v~~~p---~g~~~yv~~~~--~~~V~vid 281 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--AP------RGVAVDP---AGKAAYVANSQ--GGTVSVID 281 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CC------CceeECC---CCCEEEEEecC--CCeEEEEe
Confidence 999995555554244467899999888766542 11110 11 1112222 66666665443 35677777
Q ss_pred CCCCceEE
Q 004735 388 DFGHSLSL 395 (732)
Q Consensus 388 ~~~~~~~~ 395 (732)
..+..+..
T Consensus 282 ~~~~~v~~ 289 (381)
T COG3391 282 GATDRVVK 289 (381)
T ss_pred CCCCceee
Confidence 66655443
No 327
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.62 E-value=0.16 Score=49.83 Aligned_cols=136 Identities=10% Similarity=0.026 Sum_probs=80.3
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
...+.+....|+|||..+|-...| .+|+++++. |...+.-.+.+.. +.+..+.|.+||+.++....
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~D--------r~I~LWnv~--gdceN~~~lkgHs----gAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSD--------RAIVLWNVY--GDCENFWVLKGHS----GAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCc--------ceEEEEecc--ccccceeeecccc----ceeEeeeeccCCCEEEEecC
Confidence 334556678999999977644433 347777765 4445556666765 77889999999994444332
Q ss_pred cCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC
Q 004735 321 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 400 (732)
Q Consensus 321 ~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~ 400 (732)
..+++.+|.++|+..+=..+...+... +.... -|-.++.+...++.-.||-+ ..+...++-...
T Consensus 111 ---Dk~v~~wD~~tG~~~rk~k~h~~~vNs--------~~p~r---rg~~lv~SgsdD~t~kl~D~--R~k~~~~t~~~k 174 (338)
T KOG0265|consen 111 ---DKTVRGWDAETGKRIRKHKGHTSFVNS--------LDPSR---RGPQLVCSGSDDGTLKLWDI--RKKEAIKTFENK 174 (338)
T ss_pred ---CceEEEEecccceeeehhccccceeee--------cCccc---cCCeEEEecCCCceEEEEee--cccchhhccccc
Confidence 367899999998754433332222111 11110 34456666677787778744 344333333334
Q ss_pred CceEEe
Q 004735 401 TDIDNI 406 (732)
Q Consensus 401 ~~v~~~ 406 (732)
..+..+
T Consensus 175 yqltAv 180 (338)
T KOG0265|consen 175 YQLTAV 180 (338)
T ss_pred eeEEEE
Confidence 555555
No 328
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.59 E-value=0.012 Score=60.80 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
+++..++++...++.|..+|+.+ ++..+--.. +-....+..|-|+|++.+-++++ ..+-+++...+
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~---hLg~i~~i~F~~~g~rFissSDd---------ks~riWe~~~~ 374 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDR---HLGAILDITFVDEGRRFISSSDD---------KSVRIWENRIP 374 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccc--hHHHHHHHh---hhhheeeeEEccCCceEeeeccC---------ccEEEEEcCCC
Confidence 33446777777778899999887 542221111 12234677899999985554443 24445555544
Q ss_pred CccccEEcccCCCceecc--ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 232 NIQEPKVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 232 ~~~~~~~lt~~~~~~~~p--~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
. +..+......+.-| ..+|.|++++-.+. .+.|+++.+..-=.....+.+.+.... ++.-++.+|
T Consensus 375 v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~--------dN~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fS 441 (503)
T KOG0282|consen 375 V---PIKNIADPEMHTMPCLTLHPNGKWFAAQSM--------DNYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFS 441 (503)
T ss_pred c---cchhhcchhhccCcceecCCCCCeehhhcc--------CceEEEEecccccccCHhhhhcceecc--CceeeEEEc
Confidence 4 44444444455555 45899998876552 344777665421122223344444222 566788999
Q ss_pred CCCcEEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceee
Q 004735 310 SKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 310 pDg~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~ 354 (732)
|||+.++..+. .|. ++.+|-.+-+. ..+-..+.......|.|
T Consensus 442 pDG~~l~SGds-dG~--v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 442 PDGRTLCSGDS-DGK--VNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred CCCCeEEeecC-Ccc--EEEeechhhhhhhccccCCcceEEEEecC
Confidence 99996666554 454 66666655332 22222333344556765
No 329
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.02 Score=65.52 Aligned_cols=259 Identities=13% Similarity=0.145 Sum_probs=137.9
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCC-CCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCC
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAK-AGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ 165 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~ 165 (732)
..++..++|.+ |..--=+=....|+|.+.+|-.+.- .+ ....++...-....-| -+..|....+.++-+...++
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-~~~~~la~~~~h~G~V---~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-ASEEVLATKSKHTGPV---LGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccC-cchHHHhhhcccCCce---eeeeccccCCceeeccCCCC
Confidence 35667888888 6552111123446788777765441 11 2222221110001111 12334444555666766778
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CC
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GS 243 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~ 243 (732)
+|+++|+.. -..+.+.+...........+|.-.-.+|++..... ....++|+...+. +..+.. +.
T Consensus 140 eI~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s--------g~~~iWDlr~~~p--ii~ls~~~~~ 206 (1049)
T KOG0307|consen 140 EILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS--------GRAVIWDLRKKKP--IIKLSDTPGR 206 (1049)
T ss_pred cEEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccCCC--------CCceeccccCCCc--ccccccCCCc
Confidence 999999983 33344443221122333445665555555443322 4566778876541 233332 22
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
.......|.||+..-..+..++.+ ..-|-+.|+.-.- ...+.+.+.. .++-.+.|.+.+. +++++.. +
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR~as--sP~k~~~~H~----~GilslsWc~~D~~lllSsgk-D 275 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDS----APVIQLWDLRFAS--SPLKILEGHQ----RGILSLSWCPQDPRLLLSSGK-D 275 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCC----CceeEeecccccC--Cchhhhcccc----cceeeeccCCCCchhhhcccC-C
Confidence 345678999988876666655544 2336666765111 2345566665 6788899999775 7766654 3
Q ss_pred CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 323 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
.+++.+++.+|+.--=.+ ....|.. ++.|-+ .+-.++..+.-+|.-.||-+-
T Consensus 276 --~~ii~wN~~tgEvl~~~p-----~~~nW~f---dv~w~p---r~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGELP-----AQGNWCF---DVQWCP---RNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred --CCeeEecCCCceEeeecC-----CCCccee---eeeecC---CCcchhhhheeccceeeeeee
Confidence 458888998886432111 1223332 233332 333344455567777788654
No 330
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.50 E-value=0.06 Score=52.86 Aligned_cols=239 Identities=10% Similarity=0.088 Sum_probs=127.7
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeE-----eeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~-----~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
|+++++.+ .+...+|-|-+++.-+ |+.+ .|.-..++ .+. ..-..||.|...++--+.+ ..|
T Consensus 221 FSPDgqyL-vsgSvDGFiEVWny~~--GKlrKDLkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqD---------GkI 287 (508)
T KOG0275|consen 221 FSPDGQYL-VSGSVDGFIEVWNYTT--GKLRKDLKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQD---------GKI 287 (508)
T ss_pred eCCCCceE-eeccccceeeeehhcc--chhhhhhhhhhhc-ceeecccceEEEeecccHHHhhccCcC---------CcE
Confidence 44444444 3445677677777766 5443 23322111 111 1223477777654332221 355
Q ss_pred EEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 224 VAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
-++.+.+|.- .++.. ....-+...+||.|+.+|.-.+.+. .+.+.-++ +|+. ++.+.+.. .+
T Consensus 288 KvWri~tG~C--lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~--------tvRiHGlK-SGK~--LKEfrGHs----Sy 350 (508)
T KOG0275|consen 288 KVWRIETGQC--LRRFDRAHTKGVTCLSFSRDNSQILSASFDQ--------TVRIHGLK-SGKC--LKEFRGHS----SY 350 (508)
T ss_pred EEEEEecchH--HHHhhhhhccCeeEEEEccCcchhhcccccc--------eEEEeccc-cchh--HHHhcCcc----cc
Confidence 5555566651 22222 1112345578999999997665333 35666677 7765 56666765 77
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+....+++||. ++ .+.. .|.-.+| +..+++.-.-. +...+. ..+++..+|. +...+++. ++ .
T Consensus 351 vn~a~ft~dG~~ii-saSs-DgtvkvW--~~KtteC~~Tfk~~~~d~-------~vnsv~~~PK--npeh~iVC-Nr--s 414 (508)
T KOG0275|consen 351 VNEATFTDDGHHII-SASS-DGTVKVW--HGKTTECLSTFKPLGTDY-------PVNSVILLPK--NPEHFIVC-NR--S 414 (508)
T ss_pred ccceEEcCCCCeEE-EecC-CccEEEe--cCcchhhhhhccCCCCcc-------cceeEEEcCC--CCceEEEE-cC--C
Confidence 88999999999 54 3333 4554444 44454322111 111010 1223344431 22344433 33 2
Q ss_pred EEEEEEECCCCceEEeccCCC---c-eEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 381 SYLGILDDFGHSLSLLDIPFT---D-IDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 381 ~~ly~~~~~~~~~~~lt~~~~---~-v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
..+|+++..|.-++..+.+.. + +....++.+.++|..+.. ..+|-+...+|+++
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED---~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED---GVLYCFSVLSGKLE 472 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC---cEEEEEEeecCcee
Confidence 568999999888888887643 2 333345555565555433 35888887787764
No 331
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.49 E-value=0.15 Score=55.79 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=93.6
Q ss_pred cCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 145 ~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
|.|+.+.++.+ .++|... .+.|-.+|+.+ +... ++...............+||++.|+.... ..-|
T Consensus 20 YtGG~~~~s~nG~~L~t~~-~d~Vi~idv~t--~~~~-l~s~~~ed~d~ita~~l~~d~~~L~~a~r---------s~ll 86 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC-GDRVIIIDVAT--GSIA-LPSGSNEDEDEITALALTPDEEVLVTASR---------SQLL 86 (775)
T ss_pred ecCCceeECCCCCEEEEec-CceEEEEEccC--Ccee-cccCCccchhhhheeeecCCccEEEEeec---------cceE
Confidence 66677777643 5666643 23578888887 5432 44443322445567789999988766544 2456
Q ss_pred EEEEcCCCCccccEEcc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 224 VAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
-++++.+|+ ..+.- .+.......+++|-|..|+-.. ....+-|+|+. ++-. ...+.+.. +
T Consensus 87 rv~~L~tgk---~irswKa~He~Pvi~ma~~~~g~LlAtgg--------aD~~v~VWdi~-~~~~--th~fkG~g----G 148 (775)
T KOG0319|consen 87 RVWSLPTGK---LIRSWKAIHEAPVITMAFDPTGTLLATGG--------ADGRVKVWDIK-NGYC--THSFKGHG----G 148 (775)
T ss_pred EEEEcccch---HhHhHhhccCCCeEEEEEcCCCceEEecc--------ccceEEEEEee-CCEE--EEEecCCC----c
Confidence 667888777 43332 2344455678899995444332 23457888888 5544 45566764 5
Q ss_pred cCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCe
Q 004735 302 SPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 302 ~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
-+....|.|+-. +++.... .+ .++.+|...+.
T Consensus 149 vVssl~F~~~~~~~lL~sg~~-D~--~v~vwnl~~~~ 182 (775)
T KOG0319|consen 149 VVSSLLFHPHWNRWLLASGAT-DG--TVRVWNLNDKR 182 (775)
T ss_pred eEEEEEeCCccchhheeecCC-Cc--eEEEEEcccCc
Confidence 566677777754 4444333 34 35555665443
No 332
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.49 E-value=0.55 Score=45.44 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=82.5
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc----eeeeEEecCCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD----VYKRVCVAGFD 296 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~----~~~~~~~~~~~ 296 (732)
+.+-++|..+|+ ......-...+....||++|..+++.....-+ ....|.++|+..+.. -.....+.-.+
T Consensus 74 ~t~kLWDv~tGk---~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg---~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 74 QTAKLWDVETGK---QLATWKTNSPVKRVDFSFGGNLILASTDKQMG---YTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ceeEEEEcCCCc---EEEEeecCCeeEEEeeccCCcEEEEEehhhcC---cceEEEEEEccCChhhhcccCceEEecCCc
Confidence 455666888887 44444434445567899999998887744444 356688888862210 01123333333
Q ss_pred CCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE
Q 004735 297 PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 297 ~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
..+....|+|-|+.++.... .| .|-++|+.+|+...=... ... ..++++.+. .+...++++.
T Consensus 148 ----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~v~s~~--~h~-----~~Ind~q~s----~d~T~FiT~s 209 (327)
T KOG0643|consen 148 ----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKELVDSDE--EHS-----SKINDLQFS----RDRTYFITGS 209 (327)
T ss_pred ----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCceeeechh--hhc-----ccccccccc----CCcceEEecc
Confidence 45678889999984444444 44 466678888743221111 101 134455665 5667777887
Q ss_pred ECCEEEEEEE
Q 004735 377 QNGRSYLGIL 386 (732)
Q Consensus 377 ~~g~~~ly~~ 386 (732)
++....|+-+
T Consensus 210 ~Dttakl~D~ 219 (327)
T KOG0643|consen 210 KDTTAKLVDV 219 (327)
T ss_pred cCccceeeec
Confidence 7777777633
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.48 E-value=0.045 Score=54.00 Aligned_cols=204 Identities=18% Similarity=0.268 Sum_probs=99.4
Q ss_pred HhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-cccCCCCCcccccccccCCceeEEECCEEEEEe
Q 004735 84 VSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSN 161 (732)
Q Consensus 84 i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~ 161 (732)
+......++++.|.| .+.+|.+...+ + .|+..+.. |+. +.+.-.+ ...+-+-.| ..++..+.+.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~---~--~i~els~~--G~vlr~i~l~g------~~D~EgI~y-~g~~~~vl~~ 82 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEP---G--EIYELSLD--GKVLRRIPLDG------FGDYEGITY-LGNGRYVLSE 82 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTT---T--EEEEEETT----EEEEEE-SS-------SSEEEEEE--STTEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCC---C--EEEEEcCC--CCEEEEEeCCC------CCCceeEEE-ECCCEEEEEE
Confidence 333344588999999 78898887644 2 46777654 232 2221111 111212222 3455777788
Q ss_pred CCCCeEEEEeCCCCCCC-----ceecCCCC-CCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc--CCCCc
Q 004735 162 YKDQRLYKHSIDSKDSS-----PLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--NGQNI 233 (732)
Q Consensus 162 ~~~~~l~~~d~~~~~~~-----~~~lt~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~--~~~~~ 233 (732)
++.++|+.++++..+.. .+.++-+. ......+-..+|+|.+++++.+.+..+ ..||.++. ....
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~~~~~~~- 154 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNGFPGGFD- 154 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEESTT-SS--
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEccccCccc-
Confidence 78889999998431011 12222111 011233566889999999888776543 67888886 2222
Q ss_pred cccEEc-----ccCC---CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCC---CCcccc
Q 004735 234 QEPKVL-----VSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD---PTIVES 302 (732)
Q Consensus 234 ~~~~~l-----t~~~---~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~---~~~~~~ 302 (732)
.... .... ...+...+.|....|+.++ +.+ ..|..+|. +|++.....+.... ......
T Consensus 155 --~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS-~es------~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~Q 223 (248)
T PF06977_consen 155 --LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS-DES------RLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQ 223 (248)
T ss_dssp ---EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE-TTT------TEEEEE-T--T--EEEEEE-STTGGG-SS---S
T ss_pred --eeeccccccccccceeccccceEEcCCCCeEEEEE-CCC------CeEEEECC--CCCEEEEEEeCCcccCcccccCC
Confidence 1111 1001 1124456788877888777 443 33777774 57765444444321 000123
Q ss_pred CcCceeCCCCcEEEEEec
Q 004735 303 PTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 303 ~~~~~wspDg~l~~~~~~ 320 (732)
...+++++||+||.++..
T Consensus 224 pEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 224 PEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp EEEEEE-TT--EEEEETT
T ss_pred ccEEEECCCCCEEEEcCC
Confidence 567889999988877653
No 334
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.42 E-value=0.28 Score=54.45 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=93.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
....++.|+||+.++++..+ ...|++.... +. .+.+..+.. ...|.|+++| ++ |+..+. +
T Consensus 344 ~~~s~avS~~g~~~A~~~~~--------~~~l~~~~~g-~~---~~~~~~g~~-Lt~PS~d~~g-~v-Wtv~~g-----~ 403 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS--------RTTLYTVSPG-QP---ARALTSGST-LTRPSFSPQD-WV-WTAGPG-----G 403 (573)
T ss_pred cccceeecCCCceEEEecCC--------CcEEEEecCC-Cc---ceeeecCCC-ccCCcccCCC-CE-EEeeCC-----C
Confidence 34567899999998887332 1478877763 34 556655554 5679999998 55 444232 1
Q ss_pred ccEEEEEEecCCCceee--eEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEE--E-eccCCeEEEecccc-
Q 004735 272 KAELWVGYISENGDVYK--RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--W-IESNNEVLAIYSLD- 344 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~--~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~--~-d~~~g~~~~l~~~~- 344 (732)
..+|..+.-+.+|+... .....-...+ ...+..++.|+||. ++++... .|..+|++ + ....|+.+.|+...
T Consensus 404 ~~~vv~~~~~g~~~~~~~~~~~v~~~~l~-g~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~ 481 (573)
T PRK13614 404 NGRIVAYRPTGVAEGAQAPTVTLTADWLA-GRTVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPIT 481 (573)
T ss_pred CceEEEEecCCCcccccccceeecccccC-CCeeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCcee
Confidence 23455544322222211 1111111100 02378899999998 7776654 45544542 3 23456666665321
Q ss_pred ----cccCCCceeecccceeeeeecCCCCEEEEEE-EECCEEEEEEEECCCCceEEec
Q 004735 345 ----AEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 345 ----~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s-~~~g~~~ly~~~~~~~~~~~lt 397 (732)
....+..|. ++..|++.. ..++...++++.++++..+.+.
T Consensus 482 ~~~~~~~~sl~W~-------------~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 482 LAADSDADTGAWV-------------GDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred cccCCCcceeEEc-------------CCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 122334455 455555554 4455566788888666655444
No 335
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.36 E-value=0.02 Score=62.35 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=78.4
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc---------c--------HHHHHHHHCCCE
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---------N--------LSIQYWTSRGWA 526 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~---------~--------~~~~~l~~~G~~ 526 (732)
+.+... .+..+..|++...+ ..+..|+||++.|||++..-... . .....|.+. ..
T Consensus 16 l~~~~~-~~~~lfyw~~~s~~------~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an 87 (415)
T PF00450_consen 16 LPVNDN-ENAHLFYWFFESRN------DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-AN 87 (415)
T ss_dssp EEECTT-TTEEEEEEEEE-SS------GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SE
T ss_pred EecCCC-CCcEEEEEEEEeCC------CCCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cc
Confidence 344443 67889988886655 24567999999999986432210 0 011122222 67
Q ss_pred EEEEcCCCCCCCChhhHHhhccCCC-cccHHHHHHHHHHH-HhcCCCCCCcEEEEEcChHHHHHHHHHh-----C-----
Q 004735 527 FVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCATFL-VGSGKADEKRLCITGGSAGGYTTLAALA-----F----- 594 (732)
Q Consensus 527 v~~~d~rG~~g~g~~~~~~~~~~~~-~~~~~D~~~~i~~l-~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----- 594 (732)
++.+|.+-.+|+........ ..++ ....+|+..++... ...+.....++.|.|-|+||..+-.++. .
T Consensus 88 ~l~iD~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~ 166 (415)
T PF00450_consen 88 LLFIDQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQ 166 (415)
T ss_dssp EEEE--STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--S
T ss_pred eEEEeecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccc
Confidence 89999665566544322221 1111 12355566665533 3445556679999999999987755542 2
Q ss_pred -CCcceEEEeecCcCCHH
Q 004735 595 -RDTFKAGASLYGVADLS 611 (732)
Q Consensus 595 -p~~~~a~v~~~~~~d~~ 611 (732)
.-.++++++.+|+.+..
T Consensus 167 ~~inLkGi~IGng~~dp~ 184 (415)
T PF00450_consen 167 PKINLKGIAIGNGWIDPR 184 (415)
T ss_dssp TTSEEEEEEEESE-SBHH
T ss_pred cccccccceecCcccccc
Confidence 34589999999998764
No 336
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.36 E-value=0.89 Score=47.66 Aligned_cols=149 Identities=9% Similarity=0.045 Sum_probs=91.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
+++++...+..|.+-++|..+. ...+++-.. .....-..|+|+++.++...++. ..+-.+|+++..
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r-~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~- 144 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSR-VILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAY- 144 (487)
T ss_pred CCeEEEccCCcCcEEEeccccH-HHHHHHhhc----cCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcE-
Confidence 5577777777788888996530 123444333 22334456999999876666544 344455777665
Q ss_pred cccE-EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 234 QEPK-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 234 ~~~~-~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
+. .|....+.+..-.|+|-..+|++.. .- ...|.++|+. .-+ .++..+... ..+..+.+-|.|
T Consensus 145 --v~~~l~~htDYVR~g~~~~~~~hivvtG-sY------Dg~vrl~DtR-~~~-~~v~elnhg-----~pVe~vl~lpsg 208 (487)
T KOG0310|consen 145 --VQAELSGHTDYVRCGDISPANDHIVVTG-SY------DGKVRLWDTR-SLT-SRVVELNHG-----CPVESVLALPSG 208 (487)
T ss_pred --EEEEecCCcceeEeeccccCCCeEEEec-CC------CceEEEEEec-cCC-ceeEEecCC-----CceeeEEEcCCC
Confidence 42 3445566777788999888887765 22 2347777876 222 223334333 456788888988
Q ss_pred cEEEEEeccCCeeeEEEEeccCCe
Q 004735 313 ELFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 313 ~l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
.++.++ |..++-.+|+.+|.
T Consensus 209 s~iasA----gGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 209 SLIASA----GGNSVKVWDLTTGG 228 (487)
T ss_pred CEEEEc----CCCeEEEEEecCCc
Confidence 855543 33556677887553
No 337
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.34 E-value=0.043 Score=55.53 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=77.3
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHC---C------CEEEEEcCCCCC
Q 004735 466 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---G------WAFVDVNYGGST 536 (732)
Q Consensus 466 ~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~---G------~~v~~~d~rG~~ 536 (732)
|++...|-.||..-..|+... ..++.--++++||.|++. ..|...+..|... | |.|++|..+|
T Consensus 127 ykTeIeGL~iHFlhvk~p~~k----~~k~v~PlLl~HGwPGsv--~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG-- 198 (469)
T KOG2565|consen 127 YKTEIEGLKIHFLHVKPPQKK----KKKKVKPLLLLHGWPGSV--REFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG-- 198 (469)
T ss_pred hhhhhcceeEEEEEecCCccc----cCCcccceEEecCCCchH--HHHHhhhhhhcCccccCCccceeEEEeccCCCC--
Confidence 444446888887777776421 233444567899998664 4444556666543 3 6799999875
Q ss_pred CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec
Q 004735 537 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605 (732)
Q Consensus 537 g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~ 605 (732)
||.+- ... ..| .....++..++-|.-+ +.-++..|-|.-+|..++..++. +|+.+.+.-+..
T Consensus 199 -ygwSd--~~s-k~G-Fn~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 199 -YGWSD--APS-KTG-FNAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred -cccCc--CCc-cCC-ccHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 44331 111 112 1133344444444333 33579999999999999999998 999887765443
No 338
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.26 Score=47.24 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=94.0
Q ss_pred ccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 248 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 248 ~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
...||| =..+||.....+-+. .++++|++.++...+.++...-+.-. ..+.+++|++.-. +++.+.. .|.-
T Consensus 13 svqfSPf~~nrLavAt~q~yGl-~G~G~L~ile~~~~~gi~e~~s~d~~-----D~LfdV~Wse~~e~~~~~a~G-DGSL 85 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGL-AGNGRLFILEVTDPKGIQECQSYDTE-----DGLFDVAWSENHENQVIAASG-DGSL 85 (311)
T ss_pred eeEecccccchhheeehhhccc-ccCceEEEEecCCCCCeEEEEeeecc-----cceeEeeecCCCcceEEEEec-CceE
Confidence 467888 234577665444332 24678999999623444433333332 5688999999877 6666655 6776
Q ss_pred eEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEE
Q 004735 326 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN 405 (732)
Q Consensus 326 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~ 405 (732)
+||-.....+-+...-+.+.++.+..|.. ..+..++++.-++.-.||..+.. ..++..+....-|..
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~------------~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNT------------VRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQ 152 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEecccc------------ccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEE
Confidence 67653222222222224445555666664 45666777777888889876543 233333333333443
Q ss_pred e--eEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 406 I--TLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 406 ~--~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
. +.....+ |.+++.++...||-++..++
T Consensus 153 a~~sp~~~nl-fas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 153 AAFSPHIPNL-FASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred EecCCCCCCe-EEEccCCceEEEEEecCCCc
Confidence 3 2223334 44445566677887776643
No 339
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.30 E-value=2.1 Score=46.14 Aligned_cols=231 Identities=12% Similarity=0.083 Sum_probs=110.8
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEEeC
Q 004735 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSI 172 (732)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~ 172 (732)
+|... ++++|+... ++ .++..+..+| +..+-...+... ..+-.+.++.+++. ..++.|+.+|.
T Consensus 115 ~~~v~-~~~v~v~~~----~g--~l~ald~~tG-~~~W~~~~~~~~--------~ssP~v~~~~v~v~-~~~g~l~ald~ 177 (394)
T PRK11138 115 GVTVA-GGKVYIGSE----KG--QVYALNAEDG-EVAWQTKVAGEA--------LSRPVVSDGLVLVH-TSNGMLQALNE 177 (394)
T ss_pred ccEEE-CCEEEEEcC----CC--EEEEEECCCC-CCcccccCCCce--------ecCCEEECCEEEEE-CCCCEEEEEEc
Confidence 34545 677776432 23 3677776665 444433322000 11122345565554 45678999999
Q ss_pred CCCCCCce-ecCCCCCCCCe-EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-------
Q 004735 173 DSKDSSPL-PITPDYGEPLV-SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS------- 243 (732)
Q Consensus 173 ~~~~~~~~-~lt~~~~~~~~-~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~------- 243 (732)
++ |+.. +.......... ....|... +..+++... ...|+.+|.++|+......+....
T Consensus 178 ~t--G~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 178 SD--GAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred cC--CCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhc
Confidence 87 5432 22211000000 01233332 233333322 257888998888621111111110
Q ss_pred --CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 244 --DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 244 --~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
.....|.. .+..|++... ...|+.+|+. +|+..+...+. ....+.. .++++|+....
T Consensus 245 ~~~~~~sP~v--~~~~vy~~~~--------~g~l~ald~~-tG~~~W~~~~~--------~~~~~~~-~~~~vy~~~~~- 303 (394)
T PRK11138 245 LVDVDTTPVV--VGGVVYALAY--------NGNLVALDLR-SGQIVWKREYG--------SVNDFAV-DGGRIYLVDQN- 303 (394)
T ss_pred ccccCCCcEE--ECCEEEEEEc--------CCeEEEEECC-CCCEEEeecCC--------CccCcEE-ECCEEEEEcCC-
Confidence 01123333 3455655541 2459999998 88764443221 1122332 23446665433
Q ss_pred CCeeeEEEEeccCCeEEEeccc--ccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 322 NGFWNLHKWIESNNEVLAIYSL--DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
..|+.+|+.+|+..--.+. ......|. . .++.+|+.. .+| .|+.+|.++|+..
T Consensus 304 ---g~l~ald~~tG~~~W~~~~~~~~~~~sp~---------v-----~~g~l~v~~-~~G--~l~~ld~~tG~~~ 358 (394)
T PRK11138 304 ---DRVYALDTRGGVELWSQSDLLHRLLTAPV---------L-----YNGYLVVGD-SEG--YLHWINREDGRFV 358 (394)
T ss_pred ---CeEEEEECCCCcEEEcccccCCCcccCCE---------E-----ECCEEEEEe-CCC--EEEEEECCCCCEE
Confidence 3599999988864321111 11112221 1 345666553 344 6888899888754
No 340
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.30 E-value=1.2 Score=43.26 Aligned_cols=152 Identities=8% Similarity=0.000 Sum_probs=90.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC---
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--- 232 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~--- 232 (732)
..+.....++.+-++|+.+ |+....-.. +.......|+++|++++++.+...+.+ ..|.++|+....
T Consensus 65 ~~liTGSAD~t~kLWDv~t--Gk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~----~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVET--GKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYT----CFVSVFDIRDDSSDI 134 (327)
T ss_pred ceeeeccccceeEEEEcCC--CcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcc----eEEEEEEccCChhhh
Confidence 4555666777888899988 544332222 223344569999999888887665442 566667665211
Q ss_pred -c-cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC
Q 004735 233 -I-QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 310 (732)
Q Consensus 233 -~-~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 310 (732)
. .+...+..........-|+|-|+.|.+-. ....|-.+|+. +|... +....... ..+..+++|+
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--------e~G~is~~da~-~g~~~-v~s~~~h~----~~Ind~q~s~ 200 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGH--------EDGSISIYDAR-TGKEL-VDSDEEHS----SKINDLQFSR 200 (327)
T ss_pred cccCceEEecCCccceeeeeecccCCEEEEec--------CCCcEEEEEcc-cCcee-eechhhhc----cccccccccC
Confidence 0 01233444445566778999999886543 23458889988 66421 11112222 5678899999
Q ss_pred CCcEEEEEeccCCeeeEEEEeccC
Q 004735 311 KGELFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 311 Dg~l~~~~~~~~g~~~l~~~d~~~ 334 (732)
|...+.++.. .....| +|..+
T Consensus 201 d~T~FiT~s~-Dttakl--~D~~t 221 (327)
T KOG0643|consen 201 DRTYFITGSK-DTTAKL--VDVRT 221 (327)
T ss_pred CcceEEeccc-Ccccee--eeccc
Confidence 9864444443 333334 45444
No 341
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.26 E-value=0.92 Score=54.07 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=51.2
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEE
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 328 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~ 328 (732)
.+|-.||+++|....+.... ....+.|++-+ |++.. ..+.- + +-...++|.|.|.++..+.+..+...|.
T Consensus 215 ISWRGDG~yFAVss~~~~~~--~~R~iRVy~Re--G~L~s---tSE~v-~--gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETG--SRRVIRVYSRE--GELQS---TSEPV-D--GLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred EEECCCCcEEEEEEEEcCCC--ceeEEEEECCC--ceEEe---ccccC-C--CccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 46888888877665422210 13557777643 55421 11111 1 3345789999999655555545566666
Q ss_pred EEeccCCeEEEec----ccccccCCCceee
Q 004735 329 KWIESNNEVLAIY----SLDAEFSRPLWVF 354 (732)
Q Consensus 329 ~~d~~~g~~~~l~----~~~~~~~~~~w~~ 354 (732)
.+.-.|-+....+ +.+..+....|..
T Consensus 285 FfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 285 FFERNGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEecCCcEeeeEecCCCCCCceeeEEEECC
Confidence 6655442222221 2233344556665
No 342
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.24 E-value=0.45 Score=47.02 Aligned_cols=190 Identities=13% Similarity=-0.006 Sum_probs=96.3
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCce-ecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++.+++. ..++.|+.+|..+ |+.. +..... .....+ ..++..|++... ...|+.+|..+|
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~t--G~~~W~~~~~~----~~~~~~--~~~~~~v~v~~~---------~~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKT--GKVLWRFDLPG----PISGAP--VVDGGRVYVGTS---------DGSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTT--SEEEEEEECSS----CGGSGE--EEETTEEEEEET---------TSEEEEEETTTS
T ss_pred eCCEEEEE-cCCCEEEEEECCC--CCEEEEeeccc----ccccee--eecccccccccc---------eeeeEecccCCc
Confidence 55566555 4677899999877 5432 222110 001112 235555555442 158999998888
Q ss_pred CccccEEc---cc--CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcc-----c
Q 004735 232 NIQEPKVL---VS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV-----E 301 (732)
Q Consensus 232 ~~~~~~~l---t~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~-----~ 301 (732)
+ +.-- .. .......+....+|..+++.. ....|+.+|++ +|+..+............ .
T Consensus 97 ~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~ 164 (238)
T PF13360_consen 97 K---VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--------SSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSD 164 (238)
T ss_dssp C---EEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--------TCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETT
T ss_pred c---eeeeeccccccccccccccCceEecCEEEEEe--------ccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecc
Confidence 7 3221 11 111223334444577776655 24569999998 898755444422110000 0
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 381 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~ 381 (732)
....+... +|.++ .... .+. ++.+|..+|+..- .... ....-. +.. +++.+|+.. .+ .
T Consensus 165 ~~~~~~~~-~~~v~-~~~~-~g~--~~~~d~~tg~~~w-~~~~---~~~~~~-------~~~---~~~~l~~~~-~~--~ 222 (238)
T PF13360_consen 165 INGSPVIS-DGRVY-VSSG-DGR--VVAVDLATGEKLW-SKPI---SGIYSL-------PSV---DGGTLYVTS-SD--G 222 (238)
T ss_dssp EEEEEECC-TTEEE-EECC-TSS--EEEEETTTTEEEE-EECS---S-ECEC-------EEC---CCTEEEEEE-TT--T
T ss_pred cccceEEE-CCEEE-EEcC-CCe--EEEEECCCCCEEE-EecC---CCccCC-------cee---eCCEEEEEe-CC--C
Confidence 01223333 44444 4433 232 6666988887432 1111 111100 111 677777776 33 5
Q ss_pred EEEEEECCCCceE
Q 004735 382 YLGILDDFGHSLS 394 (732)
Q Consensus 382 ~ly~~~~~~~~~~ 394 (732)
+|+.+|+.+|+..
T Consensus 223 ~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 223 RLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEETTTTEEE
T ss_pred EEEEEECCCCCEE
Confidence 7888999998754
No 343
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.20 E-value=0.81 Score=50.44 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=116.5
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCcee--cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLP--ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~--lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
.++++...++.++++|+.+ +..-. +... .-......+++|+..++++..+ .-++++|+..-+.
T Consensus 162 ~lL~sg~~D~~v~vwnl~~--~~tcl~~~~~H----~S~vtsL~~~~d~~~~ls~~RD---------kvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLND--KRTCLHTMILH----KSAVTSLAFSEDSLELLSVGRD---------KVIIVWDLVQYKK 226 (775)
T ss_pred hheeecCCCceEEEEEccc--CchHHHHHHhh----hhheeeeeeccCCceEEEeccC---------cEEEEeehhhhhh
Confidence 4667777788999999985 33311 1111 2234567799999988887653 4677778754330
Q ss_pred cccEEcccCCCceecccc---CCCCCe-EEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeC
Q 004735 234 QEPKVLVSGSDFYAFPRM---DPRGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 309 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~---SPDG~~-la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 309 (732)
.+.+..-. ...+..+ +-+|+. +.++. . ..+.+..+|.+ +++....+.-+..+ .-..-....
T Consensus 227 --l~~lp~ye-~~E~vv~l~~~~~~~~~~~~Ta-G------~~g~~~~~d~e-s~~~~~~~~~~~~~----e~~~~~~~~ 291 (775)
T KOG0319|consen 227 --LKTLPLYE-SLESVVRLREELGGKGEYIITA-G------GSGVVQYWDSE-SGKCVYKQRQSDSE----EIDHLLAIE 291 (775)
T ss_pred --hheechhh-heeeEEEechhcCCcceEEEEe-c------CCceEEEEecc-cchhhhhhccCCch----hhhcceecc
Confidence 12222111 1111111 223331 33333 2 23346777776 66542222212111 111222333
Q ss_pred CCCcEEEEEeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 310 SKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 310 pDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
.+++++.++.. ++|+.+|.++.++. +|.....++ -++.|+.+ +.+.+++.+ ..+.-++| +.
T Consensus 292 ~~~~~l~vtae----Qnl~l~d~~~l~i~k~ivG~ndEI---------~Dm~~lG~--e~~~laVAT-Ns~~lr~y--~~ 353 (775)
T KOG0319|consen 292 SMSQLLLVTAE----QNLFLYDEDELTIVKQIVGYNDEI---------LDMKFLGP--EESHLAVAT-NSPELRLY--TL 353 (775)
T ss_pred ccCceEEEEcc----ceEEEEEccccEEehhhcCCchhh---------eeeeecCC--ccceEEEEe-CCCceEEE--ec
Confidence 45554444443 46888888776643 343222222 23334320 334455444 45555666 66
Q ss_pred CCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEE
Q 004735 389 FGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVT 430 (732)
Q Consensus 389 ~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d 430 (732)
.+..-..+......|-+++.-....++.+.+.+....+|+++
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 666666555556667777422334666777777777799984
No 344
>PRK13613 lipoprotein LpqB; Provisional
Probab=96.19 E-value=0.63 Score=52.32 Aligned_cols=167 Identities=11% Similarity=0.183 Sum_probs=92.0
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc-c-ccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-Q-EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
....++.|+||+.++++..+. ..||+-.+.++.. . ..+.+..+. ....|.|.++| +| |+. +...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~~-~Lt~PS~d~~g-~v-Wtv-d~~~-- 429 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTADG-RLTSPSWDGRG-DL-WVV-DRDP-- 429 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeeccC-cccCCcCcCCC-CE-EEe-cCCC--
Confidence 445678999999988884321 5777766544430 0 011233333 35679999998 55 444 2211
Q ss_pred CCccE-EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE--EEec-cCCeEEEec---
Q 004735 270 WDKAE-LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIE-SNNEVLAIY--- 341 (732)
Q Consensus 270 ~~~~~-l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~--~~d~-~~g~~~~l~--- 341 (732)
...+ |.+.. . +|+...+.. .... . ..+..++.|+||. ++++... .+..+|+ .+-- ..|. +.|+
T Consensus 430 -~~~~vl~v~~-~-~G~~~~V~~-~~l~-g--~~I~~lrvSrDG~RvAvv~~~-~g~~~v~va~V~R~~~G~-~~l~~~~ 500 (599)
T PRK13613 430 -ADPRLLWLLQ-G-DGEPVEVRT-PELD-G--HRVVAVRVARDGVRVALIVEK-DGRRSLQIGRIVRDAKAV-VSVEEFR 500 (599)
T ss_pred -CCceEEEEEc-C-CCcEEEeec-cccC-C--CEeEEEEECCCccEEEEEEec-CCCcEEEEEEEEeCCCCc-EEeeccE
Confidence 1223 44444 3 566543332 1211 1 2588899999998 7777665 3434443 4433 3343 4343
Q ss_pred ---ccccccCCCceeecccceeeeeecCCCCEEEEEE-EECCEEEEEEEECCCCceE
Q 004735 342 ---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 342 ---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s-~~~g~~~ly~~~~~~~~~~ 394 (732)
..-.+..+..|. ++..|++.. ...+...+|++++++....
T Consensus 501 ~l~~~l~~v~~~~W~-------------~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 501 SLAPELEDVTDMSWA-------------GDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EeccCCCccceeEEc-------------CCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 222233344555 556666644 3444677999999877654
No 345
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.47 Score=50.51 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=105.4
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC----
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP---- 269 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~---- 269 (732)
.++.|||-++.|+|-.....+.+ ..+-++.+-+++......|..- ......|--.|.+|++--.++...-
T Consensus 350 r~FswsP~~~llAYwtpe~~~~p----arvtL~evPs~~~iRt~nlfnV--sDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPETNNIP----ARVTLMEVPSKREIRTKNLFNV--SDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred cCcccCCCcceEEEEcccccCCc----ceEEEEecCccceeeeccceee--eccEEEeccCCcEEEEEEEeeccccccce
Confidence 67889999999999876555443 4555566655541001112211 1234678889999988664544321
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEec-cCCeeeEEEEeccCCeEEEecccc-cc
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNEVLAIYSLD-AE 346 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~-~~g~~~l~~~d~~~g~~~~l~~~~-~~ 346 (732)
..+-+|+.++-. . ..+..+.-. ..+-.++|-|.|. +..++.. ....-..|.+....++.+.+...+ ..
T Consensus 424 f~n~eIfrireK---d-Ipve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~ 494 (698)
T KOG2314|consen 424 FSNLEIFRIREK---D-IPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF 494 (698)
T ss_pred EeeEEEEEeecc---C-CCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc
Confidence 011233333211 1 112222222 3456789999998 5555433 223445666665455555544222 22
Q ss_pred cCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC-CceEEe-eEeCCEEEEEEe
Q 004735 347 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF-TDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~-~~v~~~-~~~~~~~~~~~~ 418 (732)
.....|+| .|+.++...-......|+-+|++-...+....+. ...+.+ .++.++++..++
T Consensus 495 ~N~vfwsP------------kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 495 ANTVFWSP------------KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cceEEEcC------------CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 33445665 7777777665555667888887654444443332 122333 445555555544
No 346
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.24 Score=48.94 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=76.6
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
.+.+...+||.||++||-++.| ..|.+++++ +=+.++-+.+...-+- .....++|+||-+ +++...+
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~D--------r~Ir~w~~~-DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~- 153 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGD--------RSIRLWDVR-DFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR- 153 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCC--------ceEEEEecc-hhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEcc-
Confidence 3445678999999999988733 347777776 4322222222211100 2456789999998 6655544
Q ss_pred CCeeeEEEEeccC-Ce-EEEecccc-cccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 322 NGFWNLHKWIESN-NE-VLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 322 ~g~~~l~~~d~~~-g~-~~~l~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
...-.+|.++-.+ |. .-..++.+ .++.... +...-++... ++..++.+...+. .|.++++.|..+..+..
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA----~~~k~imsas~dt--~i~lw~lkGq~L~~idt 226 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIA----GNAKYIMSASLDT--KICLWDLKGQLLQSIDT 226 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhc-ccceEEEeec----CCceEEEEecCCC--cEEEEecCCceeeeecc
Confidence 4444555544322 11 11111111 0110000 0111123333 4444444444443 35555777666666655
Q ss_pred CCCceEEe-eEeCCEEEEEEe
Q 004735 399 PFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 399 ~~~~v~~~-~~~~~~~~~~~~ 418 (732)
........ .+++++++..++
T Consensus 227 nq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred ccccccceeeCCCCcEEEEec
Confidence 43332222 556666655443
No 347
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.15 E-value=0.06 Score=52.13 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=93.0
Q ss_pred CEEEEEcCCCCCccCC--cccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 496 PLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~--~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..||.+-||......+ .|+.+.+.|+++||.|++.-|.-+-.+..--.+ .......+++.|.+....+.
T Consensus 17 ~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~A~~---------~~~~f~~~~~~L~~~~~~~~ 87 (250)
T PF07082_consen 17 KGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAIARE---------VWERFERCLRALQKRGGLDP 87 (250)
T ss_pred CEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHHHHH---------HHHHHHHHHHHHHHhcCCCc
Confidence 3566666764433333 356688889999999999998632221111111 12344556666666544433
Q ss_pred --CcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHHHhhcchhhhhhhhh----hcCChhhhhhcCccccCCC
Q 004735 574 --KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDN----LVGSEKDYYEKSPINFVDK 646 (732)
Q Consensus 574 --~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~sp~~~~~~ 646 (732)
-.+.=+|||+|+-+-+.+.. ++..-++-++++- .+... ..... +....... +.-.++.-... +.. ..
T Consensus 88 ~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~a-~~aIP-~~~~l~~~l~~EF~PsP~ET~~l--i~~-~Y 161 (250)
T PF07082_consen 88 AYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFPA-DEAIP-LLEQLAPALRLEFTPSPEETRRL--IRE-SY 161 (250)
T ss_pred ccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChHH-HhhCc-hHhhhccccccCccCCHHHHHHH--HHH-hc
Confidence 35778999999999888876 4433344344332 12111 00000 00000000 00011100000 000 01
Q ss_pred CCCCEEEEEeCCCCccChHHHHHHHHHHHhCCC-CEEEEEeCCCCcc
Q 004735 647 FSCPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG 692 (732)
Q Consensus 647 i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~ 692 (732)
.....|+|.-.+|.+ +++..+.+.|+.... .++....+| .|-
T Consensus 162 ~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 162 QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 123478888888876 688888888887643 346667764 684
No 348
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=96.14 E-value=0.35 Score=51.33 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=107.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEE-EEcCCCCCCC---ChhhHHhh
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFV-DVNYGGSTGY---GREFRERL 546 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~-~~d~rG~~g~---g~~~~~~~ 546 (732)
.+.++..+ +.|- +-++|+.|++-|.-. ...|.. .-.+...|.-.+ .-|.|-.+|. |.+-.
T Consensus 274 ~reEi~yY-FnPG--------D~KPPL~VYFSGyR~---aEGFEg-y~MMk~Lg~PfLL~~DpRleGGaFYlGs~ey--- 337 (511)
T TIGR03712 274 KRQEFIYY-FNPG--------DFKPPLNVYFSGYRP---AEGFEG-YFMMKRLGAPFLLIGDPRLEGGAFYLGSDEY--- 337 (511)
T ss_pred CCCeeEEe-cCCc--------CCCCCeEEeeccCcc---cCcchh-HHHHHhcCCCeEEeeccccccceeeeCcHHH---
Confidence 45566533 4453 456899999999633 233322 122445577654 4478855541 22211
Q ss_pred ccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEeecCcCCHHHHHhhcch-----
Q 004735 547 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHK----- 619 (732)
Q Consensus 547 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~p~~~~a~v~~~~~~d~~~~~~~~~~----- 619 (732)
-+.+...|+..++....+.+.++|.|.|||.+-|+.+++ .| .|+|+.=|..++..+.....-
T Consensus 338 --------E~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n~rL~RP~~ 406 (511)
T TIGR03712 338 --------EQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASRMRLDRPDE 406 (511)
T ss_pred --------HHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhccccccCCCC
Confidence 123555566555555788999999999999999999998 55 688888898888776543211
Q ss_pred hhh--hhhhhhcC----------ChhhhhhcCccccCCCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeC
Q 004735 620 FES--RYIDNLVG----------SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 687 (732)
Q Consensus 620 ~~~--~~~~~~~~----------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~ 687 (732)
|.. ..+....+ +...|... ....--++.+.+..=.+|.. ....-.++.+.|.+.++.+--.-++
T Consensus 407 F~TslDvl~~~~g~~s~~~i~~ln~~fW~~f---~~~d~S~T~F~i~YM~~DDY-D~~A~~~L~~~l~~~~~~v~~kG~~ 482 (511)
T TIGR03712 407 FGTALDILLLNTGGTSSEDVVKLDNRFWKKF---KKSDLSKTTFAIAYMKNDDY-DPTAFQDLLPYLSKQGAQVMSKGIP 482 (511)
T ss_pred CchHHHhHHhhcCCCCHHHHHHHHHHHHHHH---hhcCcccceEEEEeeccccC-CHHHHHHHHHHHHhcCCEEEecCCC
Confidence 000 00000001 11222222 22222345555555555543 4556677888888777655444454
Q ss_pred CCCcc
Q 004735 688 GEQHG 692 (732)
Q Consensus 688 ~~gH~ 692 (732)
| .|+
T Consensus 483 G-RHN 486 (511)
T TIGR03712 483 G-RHN 486 (511)
T ss_pred C-CCC
Confidence 3 464
No 349
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.06 E-value=2.6 Score=50.41 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=41.9
Q ss_pred eEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE----EcCCCCccccEEcccCCCceeccccCCCCCeEEEEe
Q 004735 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI----ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIE 262 (732)
Q Consensus 191 ~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~----d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~ 262 (732)
...-.+.+-+|...++++.. .++|..+ +.++.. ...+..-.......+||||+..|+++.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~---------~Gdi~~~~~~~~~~~~~---~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALA---------SGDIILVREDPDPDEDE---IEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CcEEEEEeccCCCcEEEEEC---------CceEEEEEccCCCCCce---eEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 34455667888887777665 2578888 555555 555544444566789999999999887
No 350
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.05 E-value=0.23 Score=52.90 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=71.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCC---CceeEEEEEEcCC--CCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDAL---NSTTEIVAIALNG--QNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~---~~~~~l~~~d~~~--~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
...+|+++|+.++..+.+.+.... ....+|++++-.. |.....+.+.++.....++.+.+|| |+ +. .
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly-V~-~---- 88 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VY-VA-T---- 88 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EE-Ee-C----
Confidence 445688888843222211110000 0013777776432 3311134455555555678889998 54 43 1
Q ss_pred CCCccEEEEE-EecCCCcee-e-eEEecCCCCC---ccccCcCceeCCCCcEEEEEeccC----------------Ceee
Q 004735 269 PWDKAELWVG-YISENGDVY-K-RVCVAGFDPT---IVESPTEPKWSSKGELFFVTDRKN----------------GFWN 326 (732)
Q Consensus 269 ~~~~~~l~v~-d~~~~g~~~-~-~~~~~~~~~~---~~~~~~~~~wspDg~l~~~~~~~~----------------g~~~ 326 (732)
..+|+.+ |.+.+|+.. + ..++.+.... .......+.|.|||+||+...... -...
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 2347766 544333221 1 2232322100 013466899999999887544200 0136
Q ss_pred EEEEeccCCeEEEeccc
Q 004735 327 LHKWIESNNEVLAIYSL 343 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~~ 343 (732)
++++++++++.+.+..+
T Consensus 166 i~r~~pdg~~~e~~a~G 182 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAHG 182 (367)
T ss_pred EEEEecCCCeEEEEecC
Confidence 89999999887766544
No 351
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.04 E-value=2.1 Score=47.51 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=92.3
Q ss_pred EEEEEeCC-CCeEEEEeCCCCCCCceecCCCCC---CCCeE----------ee----ceeecCCCCEEEEEEeccCCCCC
Q 004735 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYG---EPLVS----------YA----DGIFDPRFNRYVTVREDRRQDAL 217 (732)
Q Consensus 156 ~i~f~~~~-~~~l~~~d~~~~~~~~~~lt~~~~---~~~~~----------~~----~~~~spdG~~l~~~~~~~~~~~~ 217 (732)
+-+|.++. ..++-+++++. -+..+++.-+. .++.+ +. ..-++|||+.+.-. +
T Consensus 142 r~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~-~------- 211 (635)
T PRK02888 142 RYLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDP-K------- 211 (635)
T ss_pred eEEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecc-c-------
Confidence 55666654 55899999875 44444332211 11111 10 11256777754211 1
Q ss_pred CceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 218 NSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
.+.+-+-++|.++.+. ..++.-+. ......+||||++++..+.+... ...+..++.. +.. ....+.-.
T Consensus 212 ey~~~vSvID~etmeV--~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~----G~tl~em~a~-e~d--~~vvfni~-- 279 (635)
T PRK02888 212 KYRSLFTAVDAETMEV--AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEE----GVTLAEMMAA-ERD--WVVVFNIA-- 279 (635)
T ss_pred ceeEEEEEEECccceE--EEEEEeCC-CcccceECCCCCEEEEeccCccc----Ccceeeeccc-cCc--eEEEEchH--
Confidence 2346777889887652 23332222 22345789999988766533221 3346666554 211 12222111
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC----C-eEEEecccccccCCCceeecccceeeeeecCCCCEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN----N-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~----g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 372 (732)
. --.+.+||+..++. ...+-.+|..+ + +.....+.... ...+.+.| |++++|
T Consensus 280 ---~---iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKs---------PHGV~vSP---DGkyly 336 (635)
T PRK02888 280 ---R---IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKN---------PHGVNTSP---DGKYFI 336 (635)
T ss_pred ---H---HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCC---------ccceEECC---CCCEEE
Confidence 0 12567899833331 13477888776 2 33322222111 11233443 888888
Q ss_pred EEEEECCEEEEEEEECCC
Q 004735 373 CSYRQNGRSYLGILDDFG 390 (732)
Q Consensus 373 ~~s~~~g~~~ly~~~~~~ 390 (732)
.+...++. +-++|.+.
T Consensus 337 VanklS~t--VSVIDv~k 352 (635)
T PRK02888 337 ANGKLSPT--VTVIDVRK 352 (635)
T ss_pred EeCCCCCc--EEEEEChh
Confidence 77655544 44446554
No 352
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.03 E-value=0.098 Score=53.29 Aligned_cols=206 Identities=10% Similarity=0.011 Sum_probs=118.6
Q ss_pred CCHHHHhcc-CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccc--cCCceeEEECC
Q 004735 79 LTADVVSGA-SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQE--YGGGAFRIFGD 155 (732)
Q Consensus 79 ~~~~~i~~~-~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~--~g~~~~~~~~~ 155 (732)
+..|.|.+. ..-++.+.|++ +..|-+... .+|-+.+|..... ..+.... .+. -...+|++ .|
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD--~gG~iKyWqpnmn----nVk~~~a-------hh~eaIRdlafSp-nD 192 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSH-NGTWMISGD--KGGMIKYWQPNMN----NVKIIQA-------HHAEAIRDLAFSP-ND 192 (464)
T ss_pred eeHHHHhhhhcccceeEEEcc-CCCEEEEcC--CCceEEecccchh----hhHHhhH-------hhhhhhheeccCC-CC
Confidence 567777666 33458999994 444444432 2455555544321 1111110 011 11234444 44
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
..+.+...++.|-++|..-. .+.++|... +.......|+|.-.. +++...+ +-+-++|..+|.-
T Consensus 193 skF~t~SdDg~ikiWdf~~~-kee~vL~GH----gwdVksvdWHP~kgL-iasgskD--------nlVKlWDprSg~c-- 256 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMP-KEERVLRGH----GWDVKSVDWHPTKGL-IASGSKD--------NLVKLWDPRSGSC-- 256 (464)
T ss_pred ceeEEecCCCeEEEEeccCC-chhheeccC----CCCcceeccCCccce-eEEccCC--------ceeEeecCCCcch--
Confidence 45556667788888887652 455667554 555566779997665 5554422 3556679888761
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-E
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 314 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l 314 (732)
+-.|......+....|+|+|.+|+-.+.|. .+.++|+. . .+++..+.+.. ..+....|.|=-. |
T Consensus 257 l~tlh~HKntVl~~~f~~n~N~Llt~skD~--------~~kv~DiR-~--mkEl~~~r~Hk----kdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFNPNGNWLLTGSKDQ--------SCKVFDIR-T--MKELFTYRGHK----KDVTSLTWHPLNESL 321 (464)
T ss_pred hhhhhhccceEEEEEEcCCCCeeEEccCCc--------eEEEEehh-H--hHHHHHhhcch----hhheeeccccccccc
Confidence 222333444567889999999998776333 37888876 2 23345555544 4567889999766 6
Q ss_pred EEEEeccCCeeeEEEEe
Q 004735 315 FFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d 331 (732)
+.+... .|....|.++
T Consensus 322 ftsgg~-Dgsvvh~~v~ 337 (464)
T KOG0284|consen 322 FTSGGS-DGSVVHWVVG 337 (464)
T ss_pred eeeccC-CCceEEEecc
Confidence 655444 4554444444
No 353
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.01 E-value=0.015 Score=49.13 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=44.7
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 711 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 711 (732)
..|+|++.++.|+++|.+.++.+.+.+.. .+++..++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 58999999999999999999999998874 489999999998652 111233344445554
No 354
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.96 E-value=0.13 Score=55.83 Aligned_cols=123 Identities=11% Similarity=0.026 Sum_probs=69.8
Q ss_pred CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCC
Q 004735 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 269 (732)
Q Consensus 190 ~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~ 269 (732)
++.....+.||+|+.|+-.+.....+ ...|++++..+-.. ...|....-.+....|||||++|+-++.|+.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~e----hAvI~lw~t~~W~~--~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt--- 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKE----HAVIRLWNTANWLQ--VQELEGHSLTVTRLAFSPDGRYLLSVSRDRT--- 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCcc----ceEEEEEeccchhh--hheecccceEEEEEEECCCCcEEEEeecCce---
Confidence 34456778999999765554433222 36888888776331 3345544445678999999999998885542
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEE
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~ 330 (732)
..||-.--+..++.. ...+.... .-+....|+||++-++++.+ ...--+|..
T Consensus 596 ---~sl~~~~~~~~~e~~-fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~ 647 (764)
T KOG1063|consen 596 ---VSLYEVQEDIKDEFR-FACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEE 647 (764)
T ss_pred ---EEeeeeecccchhhh-hccccccc----eEEEEcccCcccceeEEecC-CceEEEEec
Confidence 224433111011111 11122222 44567789999875445555 344455554
No 355
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.94 E-value=1.9 Score=42.54 Aligned_cols=131 Identities=10% Similarity=-0.015 Sum_probs=79.7
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCc
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 233 (732)
++..+++...|..++.+|..+| ...++.... ....+...-+.-|-.++....++ .++-++|...++
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG-~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD--------~t~kl~D~R~k~- 166 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETG-KRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDD--------GTLKLWDIRKKE- 166 (338)
T ss_pred CCCEEEEecCCceEEEEecccc-eeeehhccc----cceeeecCccccCCeEEEecCCC--------ceEEEEeecccc-
Confidence 3467778878889999999983 334444433 22223333344577777776654 577788888765
Q ss_pred cccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 234 QEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 234 ~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
..++...........|.-++..+.-... +++|-++|+. .++. ...+.+.. ..+..+.-|++|.
T Consensus 167 --~~~t~~~kyqltAv~f~d~s~qv~sggI--------dn~ikvWd~r-~~d~--~~~lsGh~----DtIt~lsls~~gs 229 (338)
T KOG0265|consen 167 --AIKTFENKYQLTAVGFKDTSDQVISGGI--------DNDIKVWDLR-KNDG--LYTLSGHA----DTITGLSLSRYGS 229 (338)
T ss_pred --hhhccccceeEEEEEecccccceeeccc--------cCceeeeccc-cCcc--eEEeeccc----CceeeEEeccCCC
Confidence 4444433334445677777776643221 2347777875 3333 44556654 5677888899998
Q ss_pred -EE
Q 004735 314 -LF 315 (732)
Q Consensus 314 -l~ 315 (732)
+.
T Consensus 230 ~ll 232 (338)
T KOG0265|consen 230 FLL 232 (338)
T ss_pred ccc
Confidence 44
No 356
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.92 E-value=3.7 Score=45.60 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=69.1
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCcc-ccCcCceeC----CCCc---EEEEEeccCCeeeEEEEeccCCeEEEecccc
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWS----SKGE---LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD 344 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ws----pDg~---l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~ 344 (732)
..|+.+|++ +|+..+.......+ .|. .....|... -||+ +++.... +| +|+.+|+++|+..--....
T Consensus 256 ~~l~Ald~~-tG~~~W~~~~~~~~-~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~G--~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 256 DSIVALDAD-TGKVKWFYQTTPHD-LWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-NG--FFYVLDRTTGKLISARPEV 330 (488)
T ss_pred eeEEEEcCC-CCCEEEEeeCCCCC-CcccccCCCCeEEeccccCCCeeEEEEEECC-Cc--eEEEEECCCCcEeeEeEee
Confidence 479999998 89886655433221 110 111122222 2343 4555443 33 4899999998754221110
Q ss_pred cccCCCceeecccceeeeeecCCCCEEEEEEEE---------------CCEEEEEEEECCCCceEEeccCC---------
Q 004735 345 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ---------------NGRSYLGILDDFGHSLSLLDIPF--------- 400 (732)
Q Consensus 345 ~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~---------------~g~~~ly~~~~~~~~~~~lt~~~--------- 400 (732)
...... +.+.+|+.... .....|+.+|+.+|+..--....
T Consensus 331 --~~~~~~--------------~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g 394 (488)
T cd00216 331 --EQPMAY--------------DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIG 394 (488)
T ss_pred --cccccc--------------CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccC
Confidence 001111 22445543211 12356888888888754222111
Q ss_pred C-ce-EEeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 401 T-DI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 401 ~-~v-~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
. .. ..+... +.++|+.+. ...||.+|.++|+.
T Consensus 395 ~~~~~~~~~~~-g~~v~~g~~---dG~l~ald~~tG~~ 428 (488)
T cd00216 395 FPHWGGSLATA-GNLVFAGAA---DGYFRAFDATTGKE 428 (488)
T ss_pred CcccCcceEec-CCeEEEECC---CCeEEEEECCCCce
Confidence 0 01 122233 345566543 24799999999973
No 357
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.90 E-value=0.55 Score=49.53 Aligned_cols=122 Identities=12% Similarity=0.041 Sum_probs=76.5
Q ss_pred eceeecCCCCEEEEEEeccCCCC--CCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCC
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDA--LNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 271 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~ 271 (732)
-.+.|.+.|++|.+....+.... ....++||++++.... .+....-.+.+....|+|++++.+.++.-.+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p----- 297 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRFAVISGYMP----- 297 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCceeEEecccc-----
Confidence 34569999999988766554222 2234899999998655 3333232445667899999999998873332
Q ss_pred ccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC
Q 004735 272 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 272 ~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g 335 (732)
..+-++|+. |.+ +-.++.. --..+.|||.++ +++..-. .-+.++-.+++.+.
T Consensus 298 -a~~s~~~lr--~Nl--~~~~Pe~------~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~r 350 (561)
T COG5354 298 -ASVSVFDLR--GNL--RFYFPEQ------KRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAGR 350 (561)
T ss_pred -cceeecccc--cce--EEecCCc------ccccccccCcccEEEEecCC-ccccceEEeccCCc
Confidence 236777776 333 2223332 224788999999 5543322 44556777787654
No 358
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.052 Score=55.16 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCE--EEEEcCC--CC-CCCChhhHHhhccCCCcccHHHHHHHHHHHHhc
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWA--FVDVNYG--GS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 568 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~--v~~~d~r--G~-~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 568 (732)
..-++||+||.. ..........+|...+.|+. .+.+-.+ |+ .+|... . +-......++...+.+|.++
T Consensus 115 ~k~vlvFvHGfN-ntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D--r----eS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 115 AKTVLVFVHGFN-NTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD--R----ESTNYSRPALERLLRYLATD 187 (377)
T ss_pred CCeEEEEEcccC-CchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc--h----hhhhhhHHHHHHHHHHHHhC
Confidence 457999999972 22222333456666666653 3444433 22 112111 0 01113367888999999988
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh----C-----CCcceEEEeecCcCCHHHH
Q 004735 569 GKADEKRLCITGGSAGGYTTLAALA----F-----RDTFKAGASLYGVADLSML 613 (732)
Q Consensus 569 ~~~d~~ri~i~G~S~GG~~a~~~~~----~-----p~~~~a~v~~~~~~d~~~~ 613 (732)
.. ..+|.|++||||.++++.++. . +.+|+-+|+.+|=.|..-+
T Consensus 188 ~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF 239 (377)
T COG4782 188 KP--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVF 239 (377)
T ss_pred CC--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhH
Confidence 64 469999999999999987764 2 3357888888887765443
No 359
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.90 E-value=0.17 Score=52.89 Aligned_cols=148 Identities=12% Similarity=0.019 Sum_probs=89.2
Q ss_pred CceeEE--ECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEE
Q 004735 147 GGAFRI--FGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 147 ~~~~~~--~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l 223 (732)
-.+|++ +.| ++.|+.-.+|+|.++|+... ..+|++.... .-.....+|+||.+| ++..-+ +.+
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGht----DGascIdis~dGtkl-WTGGlD--------ntv 575 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHT----DGASCIDISKDGTKL-WTGGLD--------NTV 575 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCC----CCceeEEecCCCcee-ecCCCc--------cce
Confidence 344544 334 89999889999999999863 4466666542 222445689999985 332211 456
Q ss_pred EEEEcCCCCccccEEcc--cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 224 VAIALNGQNIQEPKVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt--~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
--+|+..+. ++. .-...+.....+|.|.||+.-- .++.+++.... |.- ...+.-.+ .
T Consensus 576 RcWDlregr-----qlqqhdF~SQIfSLg~cP~~dWlavGM--------ens~vevlh~s--kp~--kyqlhlhe----S 634 (705)
T KOG0639|consen 576 RCWDLREGR-----QLQQHDFSSQIFSLGYCPTGDWLAVGM--------ENSNVEVLHTS--KPE--KYQLHLHE----S 634 (705)
T ss_pred eehhhhhhh-----hhhhhhhhhhheecccCCCccceeeec--------ccCcEEEEecC--Ccc--ceeecccc----c
Confidence 667887664 332 2223445667899999998532 34457777665 211 22222222 4
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEE
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~ 330 (732)
-+-.+.|++-|+.++.+.. .+.-+.|+.
T Consensus 635 cVLSlKFa~cGkwfvStGk-DnlLnawrt 662 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGK-DNLLNAWRT 662 (705)
T ss_pred EEEEEEecccCceeeecCc-hhhhhhccC
Confidence 4567788999985555444 555566665
No 360
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.89 E-value=0.091 Score=66.39 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=60.8
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCc
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 575 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 575 (732)
|.++++||.++. ...|..+.+.| ..++.|+.++.+|.+.. .. ....++++.+.+...+.... ...+
T Consensus 1069 ~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~~-~~---------~~~~l~~la~~~~~~i~~~~-~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDGP-MQ---------TATSLDEVCEAHLATLLEQQ-PHGP 1134 (1296)
T ss_pred CCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCCC-CC---------CCCCHHHHHHHHHHHHHhhC-CCCC
Confidence 568899997443 34555566655 44699999999865321 00 01224444433333222211 1257
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEeecC
Q 004735 576 LCITGGSAGGYTTLAALA----FRDTFKAGASLYG 606 (732)
Q Consensus 576 i~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~ 606 (732)
+.++|||+||.++..++. +++++...++..+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 999999999999998876 5778888877654
No 361
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=95.86 E-value=0.54 Score=48.73 Aligned_cols=202 Identities=12% Similarity=0.136 Sum_probs=110.0
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCC--CCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPD--YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~--~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
-+.+...++.+-++|+.......+.+.+. .........|.+|+|-...++....+. +.|.++|+.+++ .
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd--------~~L~iwD~R~~~-~ 262 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD--------GKLMIWDTRSNT-S 262 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC--------CeEEEEEcCCCC-C
Confidence 34455566778888886410111112211 000134567889999887777766544 688999988532 1
Q ss_pred ccEEcccC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
+++..... ..-....+|+|=+..|.-+... ..+|.++|+. +=+ ..+..+.+.. ..+..+.|||.-.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-------D~tV~LwDlR-nL~-~~lh~~e~H~----dev~~V~WSPh~e 329 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSA-------DKTVALWDLR-NLN-KPLHTFEGHE----DEVFQVEWSPHNE 329 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccC-------CCcEEEeech-hcc-cCceeccCCC----cceEEEEeCCCCC
Confidence 13333222 3345567899966666544321 3458888987 211 2345556655 6788999999987
Q ss_pred -EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCc--eee-----cccceeeeeecCCCCEEEEEEEECCEEEEEE
Q 004735 314 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL--WVF-----GINSYEIIQSHGEKNLIACSYRQNGRSYLGI 385 (732)
Q Consensus 314 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~--w~~-----~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~ 385 (732)
++.++.. .+.-++|-++--+.+ +. .++.+.+.|. +.- ...++.|-| ..-..+.+...++.-+||.
T Consensus 330 tvLASSg~-D~rl~vWDls~ig~e-q~--~eda~dgppEllF~HgGH~~kV~DfsWnp---~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 330 TVLASSGT-DRRLNVWDLSRIGEE-QS--PEDAEDGPPELLFIHGGHTAKVSDFSWNP---NEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ceeEeccc-CCcEEEEeccccccc-cC--hhhhccCCcceeEEecCcccccccccCCC---CCCeEEEEecCCceEEEee
Confidence 7666654 555555544322222 11 1111111111 111 122333332 5556777777888888887
Q ss_pred EE
Q 004735 386 LD 387 (732)
Q Consensus 386 ~~ 387 (732)
+.
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 64
No 362
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.83 E-value=0.018 Score=57.46 Aligned_cols=144 Identities=10% Similarity=0.117 Sum_probs=90.0
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
.|+-+...++.|+++|+.. +.| +.+.- .++-+..+|+|.+ ..|+..+. ..+||..|...-..
T Consensus 201 sILas~~sDrsIvLyD~R~--~~Pl~KVi~-----~mRTN~IswnPea--fnF~~a~E-------D~nlY~~DmR~l~~- 263 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQ--ASPLKKVIL-----TMRTNTICWNPEA--FNFVAANE-------DHNLYTYDMRNLSR- 263 (433)
T ss_pred hheeeeccCCceEEEeccc--CCccceeee-----eccccceecCccc--cceeeccc-------cccceehhhhhhcc-
Confidence 4555655677899999986 333 33333 3566889999933 35554432 27899998765320
Q ss_pred ccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc
Q 004735 235 EPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 313 (732)
Q Consensus 235 ~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~ 313 (732)
+..+..+. .-+....|||-|+-++-.+.|. .|.++.+. .|..+.+.-...- +.+..+.||-|.+
T Consensus 264 -p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk--------sIRIf~~~-~~~SRdiYhtkRM-----q~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 264 -PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK--------SIRIFPVN-HGHSRDIYHTKRM-----QHVFCVKYSMDSK 328 (433)
T ss_pred -cchhhcccceeEEEeccCCCcchhccccccc--------eEEEeecC-CCcchhhhhHhhh-----heeeEEEEecccc
Confidence 22222222 2344678999999877655333 37788877 5654333222222 5677899999998
Q ss_pred EEEEEeccCCeeeEEEEec
Q 004735 314 LFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~ 332 (732)
.++...+ .+.-+||+...
T Consensus 329 yi~SGSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 329 YIISGSD-DGNVRLWKAKA 346 (433)
T ss_pred EEEecCC-Ccceeeeecch
Confidence 6655555 68888987654
No 363
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.051 Score=50.40 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCCCCCccC-Ccc-------------cHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccC-CCc-ccH
Q 004735 492 EEKPPLLVKSHGGPTSEAR-GIL-------------NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR-WGI-VDV 555 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~-~~~-------------~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~-~~~-~~~ 555 (732)
..+..++|++||.+-...+ |.. -+.+......||.|++.|..-. +.+.+.-... .+. ..+
T Consensus 98 t~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~----~kfye~k~np~kyirt~v 173 (297)
T KOG3967|consen 98 TNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRE----RKFYEKKRNPQKYIRTPV 173 (297)
T ss_pred cCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchh----hhhhhcccCcchhccchH
Confidence 3455799999996322111 110 0234445678999999986422 2222211110 011 123
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEee
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASL 604 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~ 604 (732)
+-+.-.-..++. ...++.|+++.||+||+.++-++. +|+ .+.++++.
T Consensus 174 eh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialT 223 (297)
T KOG3967|consen 174 EHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALT 223 (297)
T ss_pred HHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEee
Confidence 333333333332 345788999999999999999987 554 44444443
No 364
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=95.80 E-value=0.011 Score=61.86 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=80.6
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HHHHHHHC-CCEEEEEcCCCCCCCChhhH---Hhhcc
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFR---ERLLG 548 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~~~l~~~-G~~v~~~d~rG~~g~g~~~~---~~~~~ 548 (732)
-+..-+|.|.. + ..+.-++|+++||+.-.....++. -...|+.. ..+|+.+|||-+ .+|--+. ....+
T Consensus 120 CLYlNVW~P~~-~-----p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 120 CLYLNVWAPAA-D-----PYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPG 192 (601)
T ss_pred ceEEEEeccCC-C-----CCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCC
Confidence 46667777742 1 223348999999876555554432 23445554 578899999943 2333222 22344
Q ss_pred CCCcccHHHHHHHHHHHHhc---CCCCCCcEEEEEcChHHHHHHH-HHh--CCCcceEEEeecCcCC
Q 004735 549 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLA-ALA--FRDTFKAGASLYGVAD 609 (732)
Q Consensus 549 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~i~G~S~GG~~a~~-~~~--~p~~~~a~v~~~~~~d 609 (732)
++| .-|..-|++|+.++ -.-|+++|.|+|.|+|+..+.+ +++ ...+|+-+|+.+|..+
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 444 67888899999876 3458999999999999876543 333 3347888888777543
No 365
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=95.79 E-value=0.21 Score=52.69 Aligned_cols=120 Identities=14% Similarity=0.218 Sum_probs=70.3
Q ss_pred eCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEc
Q 004735 161 NYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVL 239 (732)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 239 (732)
...+|.+.+++-. +..++ +... .......+|+|||.-++-+.++ ..|-++...|-- ...+
T Consensus 81 ~s~DGkf~il~k~---~rVE~sv~AH----~~A~~~gRW~~dGtgLlt~GED---------G~iKiWSrsGML---RStl 141 (737)
T KOG1524|consen 81 CSNDGRFVILNKS---ARVERSISAH----AAAISSGRWSPDGAGLLTAGED---------GVIKIWSRSGML---RSTV 141 (737)
T ss_pred EcCCceEEEeccc---chhhhhhhhh----hhhhhhcccCCCCceeeeecCC---------ceEEEEeccchH---HHHH
Confidence 3356777777654 33333 3322 1223456799999987766553 466666665432 2344
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
......+...+|.||...++|.. +.++++-.+..+-++-+. ...+ +-+-...|++...|+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~---------g~h~~IKpL~~n~k~i~W---kAHD----GiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQ---------GGHISIKPLAANSKIIRW---RAHD----GLVLSLSWSTQSNII 201 (737)
T ss_pred hhcCceeEEEEECCCCCceEEec---------CCeEEEeecccccceeEE---eccC----cEEEEeecCccccce
Confidence 55555667789999999999987 344777777643333222 1222 444555666655433
No 366
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.42 Score=53.29 Aligned_cols=200 Identities=8% Similarity=-0.030 Sum_probs=100.8
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
.+..++|+.+..+.+...|..+-+|++.. ...-.+-.. ...+..++|.|-..+ +|++..-. ..+-+
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~--~~CL~~F~H----ndfVTcVaFnPvDDr-yFiSGSLD-------~KvRi 436 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGR--KECLKVFSH----NDFVTCVAFNPVDDR-YFISGSLD-------GKVRL 436 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCC--cceeeEEec----CCeeEEEEecccCCC-cEeecccc-------cceEE
Confidence 35567888888888877777666666654 222222222 244566789995444 45544221 23444
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceee---eEEecCCCCCcccc
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVES 302 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~---~~~~~~~~~~~~~~ 302 (732)
+++...+ +.--++-.+.+...+++|||+..+.-.. .+..++++.. +-++.. +..-...... -..
T Consensus 437 WsI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~--------~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~-~~r 503 (712)
T KOG0283|consen 437 WSISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTF--------NGYCRFYDTE-GLKLVSDFHIRLHNKKKKQ-GKR 503 (712)
T ss_pred eecCcCe---eEeehhhhhhheeEEeccCCceEEEEEe--------ccEEEEEEcc-CCeEEEeeeEeeccCcccc-Cce
Confidence 4555444 4444455567778999999997654432 2224455544 222211 1111111000 022
Q ss_pred CcCceeCCCC--cEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 303 PTEPKWSSKG--ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 303 ~~~~~wspDg--~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
+..+++.|-. ++++++++ .+|-++|....++....++...... ...-.|.. ||++|+..+ ++.+
T Consensus 504 ITG~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~lv~KfKG~~n~~S------Q~~Asfs~---Dgk~IVs~s-eDs~ 569 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSND----SRIRIYDGRDKDLVHKFKGFRNTSS------QISASFSS---DGKHIVSAS-EDSW 569 (712)
T ss_pred eeeeEecCCCCCeEEEecCC----CceEEEeccchhhhhhhcccccCCc------ceeeeEcc---CCCEEEEee-cCce
Confidence 4555665432 37777766 3466666543333222232222111 11123333 888888888 4555
Q ss_pred EEEEEE
Q 004735 381 SYLGIL 386 (732)
Q Consensus 381 ~~ly~~ 386 (732)
..||.+
T Consensus 570 VYiW~~ 575 (712)
T KOG0283|consen 570 VYIWKN 575 (712)
T ss_pred EEEEeC
Confidence 555554
No 367
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.024 Score=62.70 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=44.7
Q ss_pred CCEEEEEcCCCCC--CCChhhHHhhccCCCcccHHHHHHHHHHHHhcCC----CC---CCcEEEEEcChHHHHHHHHHhC
Q 004735 524 GWAFVDVNYGGST--GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK----AD---EKRLCITGGSAGGYTTLAALAF 594 (732)
Q Consensus 524 G~~v~~~d~rG~~--g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~----~d---~~ri~i~G~S~GG~~a~~~~~~ 594 (732)
.|..+++|+-+.- =+|+... ...+-+.+||+++.+.+. .+ +..|+|+||||||.+|..++.+
T Consensus 132 ~~DFFaVDFnEe~tAm~G~~l~---------dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 132 SFDFFAVDFNEEFTAMHGHILL---------DQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred ccceEEEcccchhhhhccHhHH---------HHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 4677888875321 1222211 224556778888876432 22 5679999999999999998887
Q ss_pred CCcceEEE
Q 004735 595 RDTFKAGA 602 (732)
Q Consensus 595 p~~~~a~v 602 (732)
++..++.|
T Consensus 203 kn~~~~sV 210 (973)
T KOG3724|consen 203 KNEVQGSV 210 (973)
T ss_pred hhhccchh
Confidence 75555543
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.63 E-value=5 Score=44.93 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=37.0
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccC-cCce-e--CCCCc---EEEEEeccCCeeeEEEEeccCCeE
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESP-TEPK-W--SSKGE---LFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~-~~~~-w--spDg~---l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
..|..+|++ +|++++.......+ .|+... ..+. . ..||+ ++....+ +| .+|.+|..+|+.
T Consensus 271 ~s~vAld~~-TG~~~W~~Q~~~~D-~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K-~G--~~~vlDr~tG~~ 337 (527)
T TIGR03075 271 SSIVARDPD-TGKIKWHYQTTPHD-EWDYDGVNEMILFDLKKDGKPRKLLAHADR-NG--FFYVLDRTNGKL 337 (527)
T ss_pred eeEEEEccc-cCCEEEeeeCCCCC-CccccCCCCcEEEEeccCCcEEEEEEEeCC-Cc--eEEEEECCCCce
Confidence 368889999 99998776665554 332322 1222 2 24665 4545544 44 588899988875
No 369
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.62 E-value=2.4 Score=42.24 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCC--EEEEEEeccCCCCCCceeEE
Q 004735 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEI 223 (732)
Q Consensus 146 g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~~~~~~~~~l 223 (732)
.+.+.++++-.+ .+...|..|.++|+... .+...|... ....+...|.++-. .|+...++ ..|
T Consensus 45 sitavAVs~~~~-aSGssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD---------G~i 109 (362)
T KOG0294|consen 45 SITALAVSGPYV-ASGSSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD---------GHI 109 (362)
T ss_pred ceeEEEecceeE-eccCCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCC---------CcE
Confidence 344555544332 23344568999999752 222222222 23344555666553 44433332 466
Q ss_pred EEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccC
Q 004735 224 VAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 303 (732)
Q Consensus 224 ~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~ 303 (732)
.+++...=+ ....+-.....+......|.|| ||..-..+ ..|..+++- .|+...+..+... .
T Consensus 110 ~iw~~~~W~--~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D-------~~lr~WNLV-~Gr~a~v~~L~~~-------a 171 (362)
T KOG0294|consen 110 IIWRVGSWE--LLKSLKAHKGQVTDLSIHPSGK-LALSVGGD-------QVLRTWNLV-RGRVAFVLNLKNK-------A 171 (362)
T ss_pred EEEEcCCeE--EeeeecccccccceeEecCCCc-eEEEEcCC-------ceeeeehhh-cCccceeeccCCc-------c
Confidence 666664321 0222323334467788899987 66544222 236777776 5654333333332 3
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEe
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d 331 (732)
..+.|+|.|.-+++..+ ..-.||..+
T Consensus 172 t~v~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred eeeEEcCCCCEEEEEec--cEEEEEecc
Confidence 45899999983333332 334455444
No 370
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.61 E-value=1.6 Score=46.18 Aligned_cols=202 Identities=11% Similarity=-0.013 Sum_probs=103.4
Q ss_pred ceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc---CCCceeccccCCC--CCeEEEEeccCCCCC
Q 004735 195 DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS---GSDFYAFPRMDPR--GERMAWIEWHHPNMP 269 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~---~~~~~~~p~~SPD--G~~la~~~~~~~~~~ 269 (732)
-..||-|.++++.+.. +.|++.++ ++. ..+... .........|||- +.-|||..-...+.
T Consensus 136 ~~k~s~~D~y~ARvv~----------~sl~i~e~-t~n---~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k- 200 (561)
T COG5354 136 VLKFSIDDKYVARVVG----------SSLYIHEI-TDN---IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK- 200 (561)
T ss_pred eeeeeecchhhhhhcc----------CeEEEEec-CCc---cccCchhhccccceeeEEecCCCCCceEEEEccccCCC-
Confidence 3568889888777744 68888887 444 222211 1223445678884 55577776343332
Q ss_pred CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc--C-----CeeeEEEEeccCCeEEEec
Q 004735 270 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK--N-----GFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 270 ~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~--~-----g~~~l~~~d~~~g~~~~l~ 341 (732)
...+.++.+..+..+....++... -.++.|.+.|+ |++...+. . |..+||+++......+...
T Consensus 201 --pa~~~i~sIp~~s~l~tk~lfk~~-------~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~ 271 (561)
T COG5354 201 --PAMVRILSIPKNSVLVTKNLFKVS-------GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK 271 (561)
T ss_pred --CcEEEEEEccCCCeeeeeeeEeec-------ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec
Confidence 234555555422333333333332 25788999999 76655431 1 2367898887644443332
Q ss_pred ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCC
Q 004735 342 SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGV 421 (732)
Q Consensus 342 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~ 421 (732)
.....+....|.+ .++.+.+.+... ...+-..++.+. ++-.-.....-..+.++..+++++++=++
T Consensus 272 ~~~~pVhdf~W~p------------~S~~F~vi~g~~-pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 272 DLKDPVHDFTWEP------------LSSRFAVISGYM-PASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cccccceeeeecc------------cCCceeEEeccc-ccceeecccccc-eEEecCCcccccccccCcccEEEEecCCc
Confidence 2222333445655 555555555211 122334455544 33222221111222334455666655555
Q ss_pred CCcEEEEEEcCCC
Q 004735 422 EPSSVAKVTLDDH 434 (732)
Q Consensus 422 ~~~~ly~~dl~~~ 434 (732)
....+-.+|..+.
T Consensus 338 l~gni~i~~~~~r 350 (561)
T COG5354 338 LQGNIEIFDPAGR 350 (561)
T ss_pred cccceEEeccCCc
Confidence 5555666665543
No 371
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.34 Score=46.51 Aligned_cols=180 Identities=10% Similarity=0.049 Sum_probs=96.8
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
.|+||++++.++ +..+.+..-+ -.....|.+||+.-.-+++++..+ ..|-++|+.-.. .+++..-+..
T Consensus 37 ~G~L~ile~~~~-~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~~~s-~Pi~~~kEH~ 104 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQECQSYD--TEDGLFDVAWSENHENQVIAASGD--------GSLRLFDLTMPS-KPIHKFKEHK 104 (311)
T ss_pred CceEEEEecCCC-CCeEEEEeee--cccceeEeeecCCCcceEEEEecC--------ceEEEeccCCCC-cchhHHHhhh
Confidence 467888888631 2222211110 023457889999776666665433 355556643221 0022222333
Q ss_pred CceeccccCCCCCeEEEEe-ccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEecc
Q 004735 244 DFYAFPRMDPRGERMAWIE-WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 321 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~-~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~ 321 (732)
.-+....|++--+++..++ ||. ..+||..+.. ..+..+.+.. .-+.+..|+|--. ++..+..
T Consensus 105 ~EV~Svdwn~~~r~~~ltsSWD~------TiKLW~~~r~-----~Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sg- 168 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSSWDG------TIKLWDPNRP-----NSVQTFNGHN----SCIYQAAFSPHIPNLFASASG- 168 (311)
T ss_pred hheEEeccccccceeEEeeccCC------ceEeecCCCC-----cceEeecCCc----cEEEEEecCCCCCCeEEEccC-
Confidence 3455678888666665554 222 2345544433 2356677765 6678899999655 5544443
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEE
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 384 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly 384 (732)
.+.-+||-++.. |+...|.....+...-.|+. -+..++++...++.-+.|
T Consensus 169 d~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~k------------y~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 169 DGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSK------------YNHNVLATGGVDNLVRGW 218 (311)
T ss_pred CceEEEEEecCC-CceeEEEeccceeEeecccc------------cCCcEEEecCCCceEEEE
Confidence 677778776655 44444543333444455664 445677776666554444
No 372
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=95.53 E-value=0.67 Score=45.34 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=100.8
Q ss_pred CCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccC-CCCCCceeEEEEEEcCCCCc--ccc---E
Q 004735 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-QDALNSTTEIVAIALNGQNI--QEP---K 237 (732)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~-~~~~~~~~~l~~~d~~~~~~--~~~---~ 237 (732)
++++.+++++. +..+.+...-.-+.....+.+-+|-.++|+.+.-+.. +..--+...||.+.-.-+.. ... .
T Consensus 39 dNqVhll~~d~--e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDS--EGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecC--ccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 35666666664 2222222110001234466667887777777665432 22111245677665432220 001 1
Q ss_pred Ecc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCC--CCc-
Q 004735 238 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE- 313 (732)
Q Consensus 238 ~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--Dg~- 313 (732)
.|. ..-+...-..|-||+.+|+-+. ...|.+++++.+.+........+.. ........-.||| ||.
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~---------dn~i~l~~l~ess~~vaev~ss~s~-e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD---------DNNIVLWSLDESSKIVAEVLSSESA-EMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec---------cCceEEEEcccCcchheeecccccc-cccceecccccCCCCccce
Confidence 111 1123445678999999998775 2337788887333321111122211 1114566778999 777
Q ss_pred EEEEEeccCCeeeEEEEeccCCeE-EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
+..+.+ ..|..+|..+-+. -.|... . .. -.+++.|-| +.+.++.+...+|+-+||-....+..
T Consensus 187 v~tt~d-----~tl~~~D~RT~~~~~sI~dA--H---gq---~vrdlDfNp---nkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 187 VATTSD-----STLQFWDLRTMKKNNSIEDA--H---GQ---RVRDLDFNP---NKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred EEEeCC-----CcEEEEEccchhhhcchhhh--h---cc---eeeeccCCC---CceEEEEEcCCCccEEEEeccCCCcc
Confidence 443332 3466666654321 111100 0 00 011122221 56678888888899999955433333
Q ss_pred eEEeccC
Q 004735 393 LSLLDIP 399 (732)
Q Consensus 393 ~~~lt~~ 399 (732)
++.|...
T Consensus 251 v~el~~H 257 (370)
T KOG1007|consen 251 VQELPGH 257 (370)
T ss_pred ccccCCC
Confidence 4444443
No 373
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.12 Score=50.09 Aligned_cols=95 Identities=19% Similarity=0.061 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCC--hhhHHhhccCCCcccHHHHHHHHHHHHhcCCC
Q 004735 495 PPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYG--REFRERLLGRWGIVDVNDCCSCATFLVGSGKA 571 (732)
Q Consensus 495 ~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g--~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 571 (732)
.| +|++||.+.......+....+.+.+. |..|.+.+. |.| .++...+ -+.+..+.+.+.... -
T Consensus 24 ~P-~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~lei----g~g~~~s~l~pl--------~~Qv~~~ce~v~~m~-~ 89 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEI----GDGIKDSSLMPL--------WEQVDVACEKVKQMP-E 89 (296)
T ss_pred CC-EEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEe----cCCcchhhhccH--------HHHHHHHHHHHhcch-h
Confidence 35 56689975555555566677777776 899999997 333 3333322 122333334443222 2
Q ss_pred CCCcEEEEEcChHHHHHHHHHh---CCCcceEEEee
Q 004735 572 DEKRLCITGGSAGGYTTLAALA---FRDTFKAGASL 604 (732)
Q Consensus 572 d~~ri~i~G~S~GG~~a~~~~~---~p~~~~a~v~~ 604 (732)
-++-+-++|.|.||.++-.++. .|. ++-.|+.
T Consensus 90 lsqGynivg~SQGglv~Raliq~cd~pp-V~n~ISL 124 (296)
T KOG2541|consen 90 LSQGYNIVGYSQGGLVARALIQFCDNPP-VKNFISL 124 (296)
T ss_pred ccCceEEEEEccccHHHHHHHHhCCCCC-cceeEec
Confidence 2577999999999999987776 443 4444443
No 374
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.48 E-value=3.2 Score=45.59 Aligned_cols=231 Identities=13% Similarity=0.063 Sum_probs=119.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
.++..+ .++.|=.+++..+=-....++.+ +.-+....+|++.|+ | |...- ...|.-+|+.+++
T Consensus 39 ~lAvsR-t~g~IEiwN~~~~w~~~~vi~g~---~drsIE~L~W~e~~R-L-FS~g~--------sg~i~EwDl~~lk--- 101 (691)
T KOG2048|consen 39 QLAVSR-TDGNIEIWNLSNNWFLEPVIHGP---EDRSIESLAWAEGGR-L-FSSGL--------SGSITEWDLHTLK--- 101 (691)
T ss_pred ceeeec-cCCcEEEEccCCCceeeEEEecC---CCCceeeEEEccCCe-E-EeecC--------CceEEEEecccCc---
Confidence 455444 45555556655310122333332 244566788995555 3 44332 2578888888876
Q ss_pred cEE-cccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-
Q 004735 236 PKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 313 (732)
Q Consensus 236 ~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~- 313 (732)
+.. +....+..-+.+.+|-++.++.-. ++ +.|+.++.. .+++.-.+.+.... ..+-.+.|.|+|.
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~Igc-dd-------Gvl~~~s~~-p~~I~~~r~l~rq~----sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGC-DD-------GVLYDFSIG-PDKITYKRSLMRQK----SRVLSLSWNPTGTK 168 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeec-CC-------ceEEEEecC-CceEEEEeeccccc----ceEEEEEecCCccE
Confidence 332 222233344566688887776543 22 347777766 56665556665554 5677899999997
Q ss_pred EEEEEeccCCeeeEEEEeccCCeEEEe-c----ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 314 LFFVTDRKNGFWNLHKWIESNNEVLAI-Y----SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 314 l~~~~~~~~g~~~l~~~d~~~g~~~~l-~----~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
|+--+. .| .|-.+|...+..-.+ + ..........|+. .|+ .++.| .+.+..|.-..| |.
T Consensus 169 i~~Gs~--Dg--~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv-----~~L----rd~tI-~sgDS~G~V~FW--d~ 232 (691)
T KOG2048|consen 169 IAGGSI--DG--VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV-----LFL----RDSTI-ASGDSAGTVTFW--DS 232 (691)
T ss_pred EEeccc--Cc--eEEEEEcCCCceEEEeeecccccccCCceEEEEE-----EEe----ecCcE-EEecCCceEEEE--cc
Confidence 553322 23 344556666543332 2 1111122346764 555 33333 344455655555 66
Q ss_pred CCCceEE-eccCCCceEEee-EeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 389 FGHSLSL-LDIPFTDIDNIT-LGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 389 ~~~~~~~-lt~~~~~v~~~~-~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+.+.+.+ ....+.+|..+. .+++..++ .++.+ +.+..+.+.+++
T Consensus 233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vf-saGvd--~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDADVLALAVADNEDRVF-SAGVD--PKIIQYSLTTNK 278 (691)
T ss_pred cCcchhhhhhhhhcceeEEEEcCCCCeEE-EccCC--CceEEEEecCCc
Confidence 6655433 223466677773 33323333 33333 345555555543
No 375
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.47 E-value=0.9 Score=44.05 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=68.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC--CCCccccEE--c--ccCCCceeccccCCCCCeEEEEeccC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN--GQNIQEPKV--L--VSGSDFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~~~~--l--t~~~~~~~~p~~SPDG~~la~~~~~~ 265 (732)
..+...+|+|+++.+.|.+. .+++++.++ +.. ... + |.+.+|+ -.||......|...
T Consensus 160 ~~ns~~~snd~~~~~~Vgds---------~~Vf~y~id~~sey---~~~~~~a~t~D~gF~--~S~s~~~~~FAv~~--- 222 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDS---------RRVFRYAIDDESEY---IENIYEAPTSDHGFY--NSFSENDLQFAVVF--- 222 (344)
T ss_pred ceeeeEEcCCCceEEEecCC---------CcceEEEeCCccce---eeeeEecccCCCcee--eeeccCcceEEEEe---
Confidence 34667899999998888552 355555444 333 222 2 2233343 35777666666554
Q ss_pred CCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCeEE
Q 004735 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVL 338 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~~~ 338 (732)
..+.+.++|+...+.+-....-...+.. +.+....|++-|- |+|.+. ++..+.++|..++...
T Consensus 223 -----Qdg~~~I~DVR~~~tpm~~~sstrp~hn--Ga~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 223 -----QDGTCAIYDVRNMATPMAEISSTRPHHN--GAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNH 287 (344)
T ss_pred -----cCCcEEEEEecccccchhhhcccCCCCC--CceEEEEecCCCcceEEEEec---CcceEEEEEcccCcee
Confidence 2345888888733433111000111112 6667778998776 777764 4566778888886543
No 376
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.45 E-value=2.5 Score=46.92 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=121.8
Q ss_pred cccCCceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE
Q 004735 143 QEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 143 ~~~g~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~ 222 (732)
|+....++.++.+.++......+.|-+|+.++. ...|.++.+ ..-...|-|.+++|+.-+. +..
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k---------~Ge 435 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCG------YILASKFVPGDRYIVLGTK---------NGE 435 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEeccc------cEEEEEecCCCceEEEecc---------CCc
Confidence 344556788888877666666667888887752 456666654 1122358888887654433 257
Q ss_pred EEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCceeee------EEecC
Q 004735 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVYKR------VCVAG 294 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~~~~------~~~~~ 294 (732)
|-++|+.+... +..+....+.......+||++..+-.+.|.. ..+|-+.+. ..|+.+++ +.+.-
T Consensus 436 l~vfdlaS~~l--~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 436 LQVFDLASASL--VETIRAHDGAIWSISLSPDNKGFVTGSADKT------VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred eEEEEeehhhh--hhhhhccccceeeeeecCCCCceEEecCCcE------EEEEeEEEEeccCcccceeeeeccceEEec
Confidence 77888887651 2222223344556778999999877664432 222222111 12432221 12222
Q ss_pred CCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEE-ecccccccCCCceeecccceeeeeecCCCCEEEE
Q 004735 295 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIAC 373 (732)
Q Consensus 295 ~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 373 (732)
. ..+-.+..||||+++.++-- +..-.+|-+| +=+... |... .-|.-+. ..++ |++ +++
T Consensus 508 ~-----ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD--tlKFflsLYGH----kLPV~sm-----DIS~---DSk-liv 566 (888)
T KOG0306|consen 508 E-----DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD--TLKFFLSLYGH----KLPVLSM-----DISP---DSK-LIV 566 (888)
T ss_pred c-----ccEEEEEEcCCCcEEEEEec-cCeEEEEEec--ceeeeeeeccc----ccceeEE-----eccC---CcC-eEE
Confidence 2 23456789999995555544 4555677655 322211 1111 1222221 1221 444 555
Q ss_pred EEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEe
Q 004735 374 SYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 418 (732)
Q Consensus 374 ~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 418 (732)
+...+-...+|=+|... .-+-+-..+.+|..+ ..+...++|.++
T Consensus 567 TgSADKnVKiWGLdFGD-CHKS~fAHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGD-CHKSFFAHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred eccCCCceEEeccccch-hhhhhhcccCceeEEEEcccceeEEEec
Confidence 55556667788666532 233444455666666 444444444443
No 377
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.5 Score=48.56 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=51.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
.-+++++||+.|+....+ ..|-+++.-.-.. ..........+....|||||+.|+++..+
T Consensus 148 k~vaf~~~gs~latgg~d---------g~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d--------- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD---------GTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD--------- 207 (398)
T ss_pred eEEEEcCCCCEeeecccc---------ceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC---------
Confidence 345688888876655432 2444445221110 11111222345567899999999999833
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
...|++++ +|.. +......+.+ ......+|+.|+
T Consensus 208 ~~~VW~~~-~g~~--~a~~t~~~k~--~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 208 SARVWSVN-TGAA--LARKTPFSKD--EMFSSCRFSVDN 241 (398)
T ss_pred ceEEEEec-cCch--hhhcCCcccc--hhhhhceecccC
Confidence 36777887 6632 2211212112 566778888887
No 378
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.17 Score=48.73 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.0
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEeec
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLY 605 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~ 605 (732)
-.+.+|.|-||||.++..+.. ++.-++-+-+.+
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~ 227 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLN 227 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCcccccccc
Confidence 468999999999999999987 666554443333
No 379
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.34 E-value=0.032 Score=58.63 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=36.0
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCce---eccccCCCCCeEEEE
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFY---AFPRMDPRGERMAWI 261 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~---~~p~~SPDG~~la~~ 261 (732)
.+.++|||||++|+.|..+. -|-++|-++.+ ..-+. ..++ --.+||||||+|+--
T Consensus 293 in~f~FS~DG~~LA~VSqDG---------fLRvF~fdt~e---Llg~m--kSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDG---------FLRIFDFDTQE---LLGVM--KSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred ccceeEcCCCceEEEEecCc---------eEEEeeccHHH---HHHHH--HhhccceEEEEEcCCccEEEec
Confidence 35688999999999998743 55566766544 22221 1111 235899999988743
No 380
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.34 E-value=0.05 Score=53.89 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=60.9
Q ss_pred CEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHH-HHHHHhcCCCCCC
Q 004735 496 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 574 (732)
Q Consensus 496 P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 574 (732)
|.|+++|+. ......|..+...+... ..|+..+.+|.++.... ..+.+|..+. ++.+.+. -...
T Consensus 1 ~pLF~fhp~--~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~----------~~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPA--GGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQP----------FASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCC--CCcHHHHHHHHHHhccC-ceeeccccCcccccccc----------cCCHHHHHHHHHHHHHHh--CCCC
Confidence 468899997 33345555566666555 78899998876532111 1223343332 2222222 1235
Q ss_pred cEEEEEcChHHHHHHHHHh----CCCcceEEEeecCcCC
Q 004735 575 RLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVAD 609 (732)
Q Consensus 575 ri~i~G~S~GG~~a~~~~~----~p~~~~a~v~~~~~~d 609 (732)
.+.+.|+|+||.+|.-++. ..+.+...+++..+..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 7999999999999998876 4556777777666554
No 381
>PRK13615 lipoprotein LpqB; Provisional
Probab=95.26 E-value=1.4 Score=48.99 Aligned_cols=160 Identities=10% Similarity=0.034 Sum_probs=87.2
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
..++.|+||+.++++.. ...|++-... +. .+.+..+. ....|.|+++| ++ |+..+. +..
T Consensus 337 ~s~avS~dg~~~A~v~~---------~~~l~vg~~~-~~---~~~~~~~~-~Lt~PS~d~~g-~v-Wtv~~g-----~~~ 395 (557)
T PRK13615 337 DAATLSADGRQAAVRNA---------SGVWSVGDGD-RD---AVLLDTRP-GLVAPSLDAQG-YV-WSTPAS-----DPR 395 (557)
T ss_pred ccceEcCCCceEEEEcC---------CceEEEecCC-Cc---ceeeccCC-ccccCcCcCCC-CE-EEEeCC-----Cce
Confidence 45789999999888833 1355554443 33 44554433 35679999999 55 444222 122
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE--EEeccCCeEEEe-cc------c
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIESNNEVLAI-YS------L 343 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~--~~d~~~g~~~~l-~~------~ 343 (732)
.+. ....+|+...+..-...+ +.+..++.|+||. ++++.+. .|..+|+ .+--.++..+.| +. .
T Consensus 396 ~l~--~~~~~G~~~~v~v~~~~~----~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~ 468 (557)
T PRK13615 396 GLV--AWGPDGVGHPVAVSWTAT----GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTPLELLAS 468 (557)
T ss_pred EEE--EecCCCceEEeeccccCC----CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeeccEEcccC
Confidence 222 233246553322111111 4578899999998 7776654 4444444 233345544455 31 1
Q ss_pred ccccCCCceeecccceeeeeecCCCCEEEEEE-EECCEEEEEEEECCCCceE
Q 004735 344 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s-~~~g~~~ly~~~~~~~~~~ 394 (732)
.....+..|. ++..|+... ...+...++++.+.+...+
T Consensus 469 l~~v~sl~W~-------------~~~~laVl~~~~~~~~~v~~v~v~g~~~~ 507 (557)
T PRK13615 469 PGTPLDATWV-------------DELDVATLTLAPDGERQVELHQVGGPSKD 507 (557)
T ss_pred cCcceeeEEc-------------CCCEEEEEeccCCCCceEEEEECCCcccc
Confidence 1123334455 455565555 3445567888888765443
No 382
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.26 E-value=0.87 Score=45.26 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=89.3
Q ss_pred CceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCC---CCCCeEeeceeecCC-CCEEEEEEeccCCCCCCceeE
Q 004735 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPR-FNRYVTVREDRRQDALNSTTE 222 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~spd-G~~l~~~~~~~~~~~~~~~~~ 222 (732)
+.+.-++.++|+.+. .+.||++.... .++++-.-+ .+.+. .+..|- ++.+++.-..+ ..+
T Consensus 97 I~~V~l~r~riVvvl--~~~I~VytF~~---n~k~l~~~et~~NPkGl----C~~~~~~~k~~LafPg~k-------~Gq 160 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVVL--ENKIYVYTFPD---NPKLLHVIETRSNPKGL----CSLCPTSNKSLLAFPGFK-------TGQ 160 (346)
T ss_pred eeeEEEcCCeEEEEe--cCeEEEEEcCC---ChhheeeeecccCCCce----EeecCCCCceEEEcCCCc-------cce
Confidence 455667788888884 56799998873 455544321 01111 112221 22222221111 368
Q ss_pred EEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce-eeeEEecCCCCCccc
Q 004735 223 IVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVE 301 (732)
Q Consensus 223 l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-~~~~~~~~~~~~~~~ 301 (732)
|-++|+...+...+..+......++-.+.+-+|..||-.+. .++=|.++|.. +|+. .+.+ .|.+ . .
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-------kGTLIRIFdt~-~g~~l~E~R--RG~d-~--A 227 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-------KGTLIRIFDTE-DGTLLQELR--RGVD-R--A 227 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-------CcEEEEEEEcC-CCcEeeeee--cCCc-h--h
Confidence 88888876551112444444444566788999999886651 34568899988 6654 3333 2322 1 5
Q ss_pred cCcCceeCCCCc-EEEEEeccCCeeeEEEEe
Q 004735 302 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 331 (732)
Q Consensus 302 ~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d 331 (732)
.+..+++|||++ |.+.++. |.-+|+.+.
T Consensus 228 ~iy~iaFSp~~s~LavsSdK--gTlHiF~l~ 256 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDK--GTLHIFSLR 256 (346)
T ss_pred eEEEEEeCCCccEEEEEcCC--CeEEEEEee
Confidence 677899999999 6655554 776776553
No 383
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=4.4 Score=43.54 Aligned_cols=230 Identities=10% Similarity=0.016 Sum_probs=114.2
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCC--CEEEEEEeccCCCCCCceeEEEEEE
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
..++.|..++.+...+.++.+++.+-.+....|. ..+++++.+||-+ .+|++..-...+.+. .-+||.+.
T Consensus 131 ~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~------~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa--~vri~~~~ 202 (566)
T KOG2315|consen 131 PQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS------VSGITMLSLSPGPEPPFVAVYVPEKKGAPA--SVRIYKYP 202 (566)
T ss_pred cccccchhhhhhhhcceEEEEecCCccceeeeee------ccceeeEEecCCCCCceEEEEccCCCCCCc--EEEEeccc
Confidence 3344443334444456788888764102222332 2345777888864 344443333333331 35666665
Q ss_pred cCCCCccccEEcccCC---CceeccccCCCCCeEEEEec---cCCCCC-CCccEEEEEEecCCCceeeeEEecCCCCCcc
Q 004735 228 LNGQNIQEPKVLVSGS---DFYAFPRMDPRGERMAWIEW---HHPNMP-WDKAELWVGYISENGDVYKRVCVAGFDPTIV 300 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~---~~~~~p~~SPDG~~la~~~~---~~~~~~-~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~ 300 (732)
.. +. -..+.... ....+..|.+-|.-|..+.. |..+.. ++...||.++++ |+.. ...+...
T Consensus 203 ~~-~~---~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~-~V~L~k~----- 270 (566)
T KOG2315|consen 203 EE-GQ---HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GESV-SVPLLKE----- 270 (566)
T ss_pred cc-cc---cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--CceE-EEecCCC-----
Confidence 32 21 11222111 11235789999998876542 333322 367889999987 4332 2233333
Q ss_pred ccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 379 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g 379 (732)
+-+..+.|+|+|+ +.++..- . -..+-.+|+.+.-+-.+.++.. ...-|++ .|+.|++....+-
T Consensus 271 GPVhdv~W~~s~~EF~VvyGf-M-PAkvtifnlr~~~v~df~egpR--N~~~fnp------------~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGF-M-PAKVTIFNLRGKPVFDFPEGPR--NTAFFNP------------HGNIILLAGFGNL 334 (566)
T ss_pred CCceEEEECCCCCEEEEEEec-c-cceEEEEcCCCCEeEeCCCCCc--cceEECC------------CCCEEEEeecCCC
Confidence 5688999999998 6555432 1 1234456665443333322211 1122332 6777777665433
Q ss_pred EEEEEEEECCCCceEEeccC---CCceEEeeEeCCEEEEEEe
Q 004735 380 RSYLGILDDFGHSLSLLDIP---FTDIDNITLGNDCLFVEGA 418 (732)
Q Consensus 380 ~~~ly~~~~~~~~~~~lt~~---~~~v~~~~~~~~~~~~~~~ 418 (732)
...+-+.|..+ .++|... +..+-+ ..+++++++.++
T Consensus 335 ~G~mEvwDv~n--~K~i~~~~a~~tt~~e-W~PdGe~flTAT 373 (566)
T KOG2315|consen 335 PGDMEVWDVPN--RKLIAKFKAANTTVFE-WSPDGEYFLTAT 373 (566)
T ss_pred CCceEEEeccc--hhhccccccCCceEEE-EcCCCcEEEEEe
Confidence 33344445544 3344443 223333 345555555544
No 384
>PRK13614 lipoprotein LpqB; Provisional
Probab=95.17 E-value=1.8 Score=48.23 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=98.5
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
...+..|+||+.+|++.. +...|++.... +.. ..++.+ ..+..|.|+++| -+|+..+ .+..
T Consensus 345 ~~s~avS~~g~~~A~~~~-------~~~~l~~~~~g--~~~--~~~~~g------~~Lt~PS~d~~g-~vWtv~~-g~~~ 405 (573)
T PRK13614 345 PASPAESPVSQTVAFLNG-------SRTTLYTVSPG--QPA--RALTSG------STLTRPSFSPQD-WVWTAGP-GGNG 405 (573)
T ss_pred ccceeecCCCceEEEecC-------CCcEEEEecCC--Ccc--eeeecC------CCccCCcccCCC-CEEEeeC-CCCc
Confidence 346889999999999842 23467776543 332 233443 347899999998 4555555 3333
Q ss_pred eEEEEeccC-CeEEEecccccccCCCceeec--ccceeeeeecCCCCEEEEEEEECCEEEEEE--EE-CCCCceEEeccC
Q 004735 326 NLHKWIESN-NEVLAIYSLDAEFSRPLWVFG--INSYEIIQSHGEKNLIACSYRQNGRSYLGI--LD-DFGHSLSLLDIP 399 (732)
Q Consensus 326 ~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~--~~-~~~~~~~~lt~~ 399 (732)
+|.++..++ ++...... ......|..+ +..+..++ ||-++++..+.+|..+||+ +- ...|..+.|+.+
T Consensus 406 ~vv~~~~~g~~~~~~~~~---~~v~~~~l~g~~I~~lrvSr---DG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~ 479 (573)
T PRK13614 406 RIVAYRPTGVAEGAQAPT---VTLTADWLAGRTVKELRVSR---EGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAP 479 (573)
T ss_pred eEEEEecCCCcccccccc---eeecccccCCCeeEEEEECC---CccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCc
Confidence 666665433 22111100 0011234432 45566665 8888888887788766654 32 345665666654
Q ss_pred -----CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 400 -----FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 400 -----~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
...+.++ ...++.+++..........++++.+.++..
T Consensus 480 ~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~ 522 (573)
T PRK13614 480 ITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQP 522 (573)
T ss_pred eecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCc
Confidence 2344555 566778888777666666788888866653
No 385
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.17 E-value=0.046 Score=53.24 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHhC-----CCcceEEEeecCc
Q 004735 558 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-----RDTFKAGASLYGV 607 (732)
Q Consensus 558 ~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~-----p~~~~a~v~~~~~ 607 (732)
...|++|+.+.-.-.+++|.+.|||.||++|..++.+ .+++..+....+.
T Consensus 68 q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 68 QKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 3455555544311124569999999999999988872 4578888877765
No 386
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.14 E-value=0.026 Score=37.83 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=27.3
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC--CEEEEEE
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGI 385 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~--g~~~ly~ 385 (732)
++++........|.|++ ||+.|+|++++. |..+||+
T Consensus 2 ~~~t~~~~~~~~p~~Sp------------DGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSP------------DGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-T------------TSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEec------------CCCEEEEEecCCCCCCcCEEC
Confidence 45665555566788887 999999999998 8888985
No 387
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.13 E-value=2.5 Score=43.12 Aligned_cols=132 Identities=10% Similarity=0.051 Sum_probs=78.8
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccC
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 322 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~ 322 (732)
.+.+....|++ -..++-.+||+ .|.+.|+. +|.. ...+... ..+..+..+|..+|+.....
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDH--------TIk~WDle-tg~~--~~~~~~~-----ksl~~i~~~~~~~Ll~~gss-- 320 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDH--------TIKVWDLE-TGGL--KSTLTTN-----KSLNCISYSPLSKLLASGSS-- 320 (423)
T ss_pred ccceeeEEEcC-CCceEeecccc--------eEEEEEee-cccc--eeeeecC-----cceeEeecccccceeeecCC--
Confidence 34566778987 44566666666 28888998 6644 2333333 34556777887765444322
Q ss_pred CeeeEEEEeccCCeE----EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 323 GFWNLHKWIESNNEV----LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 323 g~~~l~~~d~~~g~~----~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
..+|.++||.++.- ..+......+....|++ .+...+++...++...||-+....+.+-.|..
T Consensus 321 -dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp------------~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 321 -DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP------------TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred -CCceeecCCCCCCCceeEEeeecchhhhhheecCC------------CCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 34677789887532 23334444555666765 55566677777888888866554444555555
Q ss_pred CCCceEEe
Q 004735 399 PFTDIDNI 406 (732)
Q Consensus 399 ~~~~v~~~ 406 (732)
.+.-|-.+
T Consensus 388 h~DKvl~v 395 (423)
T KOG0313|consen 388 HNDKVLSV 395 (423)
T ss_pred CCceEEEE
Confidence 54444444
No 388
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.01 E-value=0.86 Score=51.29 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=90.3
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCC----ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeE-EEEEE
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE-IVAIA 227 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~-l~~~d 227 (732)
+++.+++.......||+-++..+ +. .+.+.. +..+..|+|+++| . +++.+..... .+ |.++.
T Consensus 373 ~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~-----~~~Lt~PS~d~~g-~-vWtvd~~~~~-----~~vl~v~~ 439 (599)
T PRK13613 373 DESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTA-----DGRLTSPSWDGRG-D-LWVVDRDPAD-----PRLLWLLQ 439 (599)
T ss_pred CCceEEEEcCCCcEEEEeccCCC-Cccccccceeec-----cCcccCCcCcCCC-C-EEEecCCCCC-----ceEEEEEc
Confidence 45577777654457777666431 22 222222 2346788999998 3 3443321111 23 44444
Q ss_pred cCCCCccccEEcccC--C-CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCc--eeeeEEecCCCCCcc
Q 004735 228 LNGQNIQEPKVLVSG--S-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRVCVAGFDPTIV 300 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~--~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~--~~~~~~~~~~~~~~~ 300 (732)
.+|+ +..+... . ..+...+.|+||.++|.+.... ...+|++.-+.. +|. +...+.+...-
T Consensus 440 -~~G~---~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~l---- 506 (599)
T PRK13613 440 -GDGE---PVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPEL---- 506 (599)
T ss_pred -CCCc---EEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccCC----
Confidence 3555 4333221 1 2466789999999999987332 245677766542 343 22222222222
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeE
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 337 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~ 337 (732)
..+..+.|..+++|++......+...++++++++...
T Consensus 507 ~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 507 EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 3467889999988766543324577899998887543
No 389
>PRK13615 lipoprotein LpqB; Provisional
Probab=94.99 E-value=0.89 Score=50.46 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=85.7
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++..+++.+. ++.|++-... +..+.+... ..+..|+|+++| ++ ++..+.. ...+.... .+|
T Consensus 343 ~dg~~~A~v~~-~~~l~vg~~~---~~~~~~~~~-----~~Lt~PS~d~~g-~v-Wtv~~g~------~~~l~~~~-~~G 404 (557)
T PRK13615 343 ADGRQAAVRNA-SGVWSVGDGD---RDAVLLDTR-----PGLVAPSLDAQG-YV-WSTPASD------PRGLVAWG-PDG 404 (557)
T ss_pred CCCceEEEEcC-CceEEEecCC---CcceeeccC-----CccccCcCcCCC-CE-EEEeCCC------ceEEEEec-CCC
Confidence 34556777743 4456665543 344444432 345778999999 43 4433221 13333333 234
Q ss_pred CccccEEccc---CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceeee----EEecCCCCCccccC
Q 004735 232 NIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKR----VCVAGFDPTIVESP 303 (732)
Q Consensus 232 ~~~~~~~lt~---~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~~----~~~~~~~~~~~~~~ 303 (732)
+ +..+.- ....+...+.|+||.++|.+.... ...+|++.-+.. +|....+ +.+.... ..+
T Consensus 405 ~---~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l----~~v 472 (557)
T PRK13615 405 V---GHPVAVSWTATGRVVSLEVARDGARVLVQLETG-----AGPQLLVASIVRDGGVPTSLTTTPLELLASP----GTP 472 (557)
T ss_pred c---eEEeeccccCCCeeEEEEeCCCccEEEEEEecC-----CCCEEEEEEEEeCCCcceEeeeccEEcccCc----Ccc
Confidence 4 333321 123466789999999999986332 245687766553 3322122 2222122 456
Q ss_pred cCceeCCCCcEEEEEeccCCeeeEEEEeccCC
Q 004735 304 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 335 (732)
Q Consensus 304 ~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g 335 (732)
....|..|++|+.......+..+++++.+.+.
T Consensus 473 ~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 473 LDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred eeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 78899999987666643244566788877654
No 390
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=94.93 E-value=0.064 Score=52.33 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.9
Q ss_pred CCcEEEEEcChHHHHHHHHHh
Q 004735 573 EKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999977665
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=4.6 Score=40.15 Aligned_cols=210 Identities=12% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEE
Q 004735 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTV 157 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i 157 (732)
+..+.|.+....++++.|+| .+.+|-+-..+. .|+..+.. |..-.-.|-.+ ++..-.-. ...++..
T Consensus 76 i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~-----~iVElt~~--GdlirtiPL~g-----~~DpE~Ie-yig~n~f 142 (316)
T COG3204 76 IDAKPILGETANVSSLTYNPDTRTLFAVTNKPA-----AIVELTKE--GDLIRTIPLTG-----FSDPETIE-YIGGNQF 142 (316)
T ss_pred EeccccccccccccceeeCCCcceEEEecCCCc-----eEEEEecC--CceEEEecccc-----cCChhHeE-EecCCEE
Confidence 44445666656689999999 666766654332 45665544 33322222221 11111101 1223455
Q ss_pred EEEeCCCCeEEEEeCCCCCCCce-----ecCCCCCCC-CeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPL-----PITPDYGEP-LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~-----~lt~~~~~~-~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
+.++++++.||.+.++.+ .... .++-+..+. ..-+-..+|+|+.++++++.+..+ ..||.++....
T Consensus 143 vi~dER~~~l~~~~vd~~-t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-------~~I~~~~~~~~ 214 (316)
T COG3204 143 VIVDERDRALYLFTVDAD-TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-------IGIFEVTQSPS 214 (316)
T ss_pred EEEehhcceEEEEEEcCC-ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-------cEEEEEecCCc
Confidence 666777777887777641 1111 122111111 234566789999999888887664 67888774331
Q ss_pred CccccEEcccCC--------CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEec-CCCC--Ccc
Q 004735 232 NIQEPKVLVSGS--------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA-GFDP--TIV 300 (732)
Q Consensus 232 ~~~~~~~lt~~~--------~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~-~~~~--~~~ 300 (732)
.. ...+.... .-..+..+.+.-..|..++ +++. .|..+|.+ |++.....+. +... .-.
T Consensus 215 ~l--~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-~ESr------~l~Evd~~--G~~~~~lsL~~g~~gL~~di 283 (316)
T COG3204 215 SL--SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-DESR------RLLEVDLS--GEVIELLSLTKGNHGLSSDI 283 (316)
T ss_pred cc--ccccccCcccccceEeeccccceecCCCCcEEEEe-cCCc------eEEEEecC--CCeeeeEEeccCCCCCcccC
Confidence 10 00111111 1123456666555666666 4433 25555554 5543333232 2210 000
Q ss_pred ccCcCceeCCCCcEEEEEec
Q 004735 301 ESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~ 320 (732)
.....++-.++|.||.++..
T Consensus 284 pqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 284 PQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred CCcceeEECCCCCEEEEecC
Confidence 12335566677767777654
No 392
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.85 E-value=3.4 Score=41.31 Aligned_cols=136 Identities=11% Similarity=0.006 Sum_probs=70.1
Q ss_pred eEEEEEEcCCCCccccEEcccCC----C--ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeee--EEe
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGS----D--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCV 292 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~----~--~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~--~~~ 292 (732)
+-|.++|.-+|+ .+.--..- + -.....|||||.+|+ .. .+.-|.++|+...|..-.. ++.
T Consensus 133 ~PIh~wdaftG~---lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 133 QPIHLWDAFTGK---LRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred Cceeeeeccccc---cccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhh
Confidence 456777877776 44322111 1 112468999999994 43 2445899998645532111 122
Q ss_pred cCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCE
Q 004735 293 AGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNL 370 (732)
Q Consensus 293 ~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (732)
.+.. ...+-+...+++|-.. ++..... .....||. -+++..-.+. .....++...|-+ +|++
T Consensus 201 ~~k~-gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~--~~~~~pl~llggh~gGvThL~~~e------------dGn~ 264 (406)
T KOG2919|consen 201 KGKF-GQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYN--DDGRRPLQLLGGHGGGVTHLQWCE------------DGNK 264 (406)
T ss_pred cccc-cccceeeeeeccCCCCcceeeecc-cceeeeEe--cCCCCceeeecccCCCeeeEEecc------------CcCe
Confidence 2221 1114456777888543 3333222 12334554 3344443333 3344555566665 7777
Q ss_pred EEEEEEECCEEEEE
Q 004735 371 IACSYRQNGRSYLG 384 (732)
Q Consensus 371 l~~~s~~~g~~~ly 384 (732)
|+..+..+..--.|
T Consensus 265 lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 265 LFSGARKDDKILCW 278 (406)
T ss_pred ecccccCCCeEEEE
Confidence 77766655543333
No 393
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.82 E-value=5 Score=44.03 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=37.1
Q ss_pred ceeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEE
Q 004735 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRY 205 (732)
Q Consensus 148 ~~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l 205 (732)
.+|.++|..++... +++++++|...| +....|... .....-.+||.||++.
T Consensus 18 ~afkPDGsqL~lAA--g~rlliyD~ndG-~llqtLKgH----KDtVycVAys~dGkrF 68 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA--GSRLLVYDTSDG-TLLQPLKGH----KDTVYCVAYAKDGKRF 68 (1081)
T ss_pred eEECCCCceEEEec--CCEEEEEeCCCc-ccccccccc----cceEEEEEEccCCcee
Confidence 45777777887773 567999999874 555566554 4566778899999973
No 394
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.81 E-value=0.79 Score=49.84 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=43.6
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEE
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAW 260 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~ 260 (732)
...+.+|-|||.+++.... +.|+++|...|.. ...|-...+.++-.+||.||++.|-
T Consensus 14 ci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~l--lqtLKgHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTL--LQPLKGHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEecC----------CEEEEEeCCCccc--ccccccccceEEEEEEccCCceecc
Confidence 4578899999999877765 6899999987761 3444455567778899999998653
No 395
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.80 E-value=1 Score=45.67 Aligned_cols=142 Identities=7% Similarity=0.046 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCccccEEccc---CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCC
Q 004735 221 TEIVAIALNGQNIQEPKVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 297 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~---~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~ 297 (732)
.+||+.|+..-+. ...|.. ..........++++.+|||=.... ..+|+++|+. + ++....+...+
T Consensus 106 e~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t------~GdV~l~d~~-n--l~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAYPGSTT------SGDVVLFDTI-N--LQPVNTINAHK- 173 (391)
T ss_pred ccEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEecCCCC------CceEEEEEcc-c--ceeeeEEEecC-
Confidence 4799999987541 111211 112233345566777999875333 4569999976 3 23355555555
Q ss_pred CccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCe-EEEecccccccCCCceeecccceeeeeecCCCCEEEEEEE
Q 004735 298 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 298 ~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~ 376 (732)
+.+.-+++++||.++.++.. .|. -|.++...+|+ ..+.-.+ ..-.....+.|.+ +.. ++..+.
T Consensus 174 ---~~lAalafs~~G~llATASe-KGT-VIRVf~v~~G~kl~eFRRG-------~~~~~IySL~Fs~---ds~-~L~~sS 237 (391)
T KOG2110|consen 174 ---GPLAALAFSPDGTLLATASE-KGT-VIRVFSVPEGQKLYEFRRG-------TYPVSIYSLSFSP---DSQ-FLAASS 237 (391)
T ss_pred ---CceeEEEECCCCCEEEEecc-Cce-EEEEEEcCCccEeeeeeCC-------ceeeEEEEEEECC---CCC-eEEEec
Confidence 77889999999995555544 342 23334444443 2222222 1111234456653 555 444555
Q ss_pred ECCEEEEEEEECCC
Q 004735 377 QNGRSYLGILDDFG 390 (732)
Q Consensus 377 ~~g~~~ly~~~~~~ 390 (732)
..+.-||+.++...
T Consensus 238 ~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 238 NTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEEEecccc
Confidence 57788999887543
No 396
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.80 E-value=5.4 Score=40.60 Aligned_cols=224 Identities=14% Similarity=0.129 Sum_probs=113.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
+.+.+...+-.+.++|.++ ..+.+...-+ +......+.|-|-|.+|+-...+ +.|..++.++|--
T Consensus 163 k~l~tcSsDl~~~LWd~~~---~~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD---------~tik~We~~tg~c-- 227 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDT---FFRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRD---------NTIKAWECDTGYC-- 227 (406)
T ss_pred cEEEecCCccchhheeHHH---HHHHHHHhcC-cccceeeEEEEecCCeeeecccc---------cceeEEeccccee--
Confidence 3444443444466777653 1222221100 13445677889999876443321 5778889988751
Q ss_pred cEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC----
Q 004735 236 PKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK---- 311 (732)
Q Consensus 236 ~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD---- 311 (732)
+.+++...+.+...+.+-||+-+|-.+ +...|.++-+. ++.. ...+.+.+ ..+.-.+|.|+
T Consensus 228 v~t~~~h~ewvr~v~v~~DGti~As~s--------~dqtl~vW~~~-t~~~--k~~lR~hE----h~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 228 VKTFPGHSEWVRMVRVNQDGTIIASCS--------NDQTLRVWVVA-TKQC--KAELREHE----HPVECIAWAPESSYP 292 (406)
T ss_pred EEeccCchHhEEEEEecCCeeEEEecC--------CCceEEEEEec-cchh--hhhhhccc----cceEEEEecccccCc
Confidence 455666667777788899998776544 12335555555 4421 11222222 22333344443
Q ss_pred ----------Cc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCE
Q 004735 312 ----------GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 380 (732)
Q Consensus 312 ----------g~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~ 380 (732)
|. +.+...+ . ..|-.+|..+|..- .+.. +...|+ +.+.|. .++.++++..+++.
T Consensus 293 ~i~~at~~~~~~~~l~s~Sr-D--ktIk~wdv~tg~cL--~tL~---ghdnwV---r~~af~----p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSR-D--KTIKIWDVSTGMCL--FTLV---GHDNWV---RGVAFS----PGGKYILSCADDKT 357 (406)
T ss_pred chhhccCCCCCccEEEeecc-c--ceEEEEeccCCeEE--EEEe---ccccee---eeeEEc----CCCeEEEEEecCCc
Confidence 22 3333322 2 23556677777432 2111 234554 345666 56667777778888
Q ss_pred EEEEEEECCCCc-eEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEE
Q 004735 381 SYLGILDDFGHS-LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 426 (732)
Q Consensus 381 ~~ly~~~~~~~~-~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 426 (732)
-++|-+. .++ .+.+..+..-+..+......-++++++-+.+..+
T Consensus 358 lrvwdl~--~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 358 LRVWDLK--NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEEEEec--cceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 8888654 332 3334433333444433333334445444433333
No 397
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.79 E-value=0.44 Score=52.70 Aligned_cols=152 Identities=12% Similarity=0.069 Sum_probs=95.0
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 153 ~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
..-.|+.+...|+-|-.+|+.. ..-...... ......|+.|||.-...++...+. +.|-.+|+..-.
T Consensus 144 tep~iliSGSQDg~vK~~DlR~--~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlRqp~ 210 (839)
T KOG0269|consen 144 TEPNILISGSQDGTVKCWDLRS--KKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLRQPD 210 (839)
T ss_pred CCccEEEecCCCceEEEEeeec--ccccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeeccCch
Confidence 3447888888888888899876 444444443 134568899999443323333322 567777886422
Q ss_pred ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCC
Q 004735 233 IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 312 (732)
Q Consensus 233 ~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg 312 (732)
....+++...+++.-..|+|++.+||--. +. ..+.++|+. +++......+... ..+..+.|-|+-
T Consensus 211 -r~~~k~~AH~GpV~c~nwhPnr~~lATGG--RD------K~vkiWd~t-~~~~~~~~tInTi-----apv~rVkWRP~~ 275 (839)
T KOG0269|consen 211 -RCEKKLTAHNGPVLCLNWHPNREWLATGG--RD------KMVKIWDMT-DSRAKPKHTINTI-----APVGRVKWRPAR 275 (839)
T ss_pred -hHHHHhhcccCceEEEeecCCCceeeecC--CC------ccEEEEecc-CCCccceeEEeec-----ceeeeeeeccCc
Confidence 11345666667777778999999988544 22 236677776 5555444444333 456789999997
Q ss_pred c-EEEEEeccCCeeeEEEEecc
Q 004735 313 E-LFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 313 ~-l~~~~~~~~g~~~l~~~d~~ 333 (732)
+ .+.++.. -+...|+++|+.
T Consensus 276 ~~hLAtcsm-v~dtsV~VWDvr 296 (839)
T KOG0269|consen 276 SYHLATCSM-VVDTSVHVWDVR 296 (839)
T ss_pred cchhhhhhc-cccceEEEEeec
Confidence 7 4434333 356678888764
No 398
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=94.75 E-value=1.9 Score=42.48 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=92.7
Q ss_pred CEEEEEeCCCCeEEEEeCCCCC-CCceecCC---------CCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKD-SSPLPITP---------DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~-~~~~~lt~---------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
++...+...++.|.++|++..+ .+..-|+. .+..+.....+..|=|-..- .|++..- ...|-
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFtssSF-------DhtlK 127 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFTSSSF-------DHTLK 127 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eeecccc-------cceEE
Confidence 3555666677888888886410 11111111 11112233455556664433 2332211 25788
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
++|..+-+ ......-++.+..-+|||=...=..+.... ...++.+.|++ +|.. -..+.+.- ..+-
T Consensus 128 VWDtnTlQ---~a~~F~me~~VYshamSp~a~sHcLiA~gt-----r~~~VrLCDi~-SGs~--sH~LsGHr----~~vl 192 (397)
T KOG4283|consen 128 VWDTNTLQ---EAVDFKMEGKVYSHAMSPMAMSHCLIAAGT-----RDVQVRLCDIA-SGSF--SHTLSGHR----DGVL 192 (397)
T ss_pred Eeecccce---eeEEeecCceeehhhcChhhhcceEEEEec-----CCCcEEEEecc-CCcc--eeeecccc----CceE
Confidence 88988766 444445566777788999544211222111 34568999999 8877 44566664 6678
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEe
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 340 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 340 (732)
.+.|+|... ++++..- .|..+||-+.-.+|-.+.+
T Consensus 193 aV~Wsp~~e~vLatgsa-Dg~irlWDiRrasgcf~~l 228 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSA-DGAIRLWDIRRASGCFRVL 228 (397)
T ss_pred EEEeccCceeEEEecCC-CceEEEEEeecccceeEEe
Confidence 899999988 6665544 6766776555555555444
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.73 E-value=1.4 Score=47.02 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=57.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEE-EcCC-CCcc-ccEEcccC--------CCceeccccCCCCCeEEEEe
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI-ALNG-QNIQ-EPKVLVSG--------SDFYAFPRMDPRGERMAWIE 262 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~-d~~~-~~~~-~~~~lt~~--------~~~~~~p~~SPDG~~la~~~ 262 (732)
..+.+.++| | |+.. ..+|+++ +.++ ++.. ..+.|..+ ......+.|.|||+ |++..
T Consensus 75 ~Gi~~~~~G--l-yV~~---------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~ 141 (367)
T TIGR02604 75 TGLAVAVGG--V-YVAT---------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH 141 (367)
T ss_pred cceeEecCC--E-EEeC---------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec
Confidence 556788888 3 3333 1467766 4433 1100 13444322 12244789999996 77654
Q ss_pred ccCCC----CC--------CCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEe
Q 004735 263 WHHPN----MP--------WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 263 ~~~~~----~~--------~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~ 319 (732)
....+ .+ .....++.++.+ +++. .++...- .....++|+++|+++++-+
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd-g~~~---e~~a~G~----rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPD-GGKL---RVVAHGF----QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecC-CCeE---EEEecCc----CCCccceECCCCCEEEEcc
Confidence 32211 01 122468888887 5554 3333333 5567899999998765533
No 400
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.70 E-value=0.84 Score=44.99 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc
Q 004735 243 SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 321 (732)
Q Consensus 243 ~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~ 321 (732)
++.+...+||| +...|+-.+|+. ++.+++++.+|.... +.....+ +-+-...|+.||..+|+..-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~--------tVR~wevq~~g~~~~-ka~~~~~----~PvL~v~WsddgskVf~g~~- 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDG--------TVRIWEVQNSGQLVP-KAQQSHD----GPVLDVCWSDDGSKVFSGGC- 92 (347)
T ss_pred ccchheeEeccccCceEEecccCC--------ceEEEEEecCCcccc-hhhhccC----CCeEEEEEccCCceEEeecc-
Confidence 34566788999 333343445443 377777774465433 2222222 45677899999997776655
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceee
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 354 (732)
.+. +-.+|+.+++..++-..+..+..-.|.+
T Consensus 93 Dk~--~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 93 DKQ--AKLWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred CCc--eEEEEccCCCeeeeeecccceeEEEEec
Confidence 444 5556899999988876655555556664
No 401
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=94.65 E-value=0.16 Score=54.51 Aligned_cols=138 Identities=16% Similarity=0.169 Sum_probs=81.2
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-HH--------HHHHH------CCCEEE
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SI--------QYWTS------RGWAFV 528 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-~~--------~~l~~------~G~~v~ 528 (732)
+.+... .+..+.+|+++... .....|+||++-|||+...-..... .. ..|.. +-..++
T Consensus 49 v~v~~~-~~~~LFYwf~eS~~------~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiL 121 (454)
T KOG1282|consen 49 VTVNES-EGRQLFYWFFESEN------NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANIL 121 (454)
T ss_pred EECCCC-CCceEEEEEEEccC------CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEE
Confidence 344433 67889988887754 2445799999999997653322110 00 00111 113577
Q ss_pred EEcCCCCCCCChhhHHhhccC-CC-cccHHHHHHH-HHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC------
Q 004735 529 DVNYGGSTGYGREFRERLLGR-WG-IVDVNDCCSC-ATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR------ 595 (732)
Q Consensus 529 ~~d~rG~~g~g~~~~~~~~~~-~~-~~~~~D~~~~-i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p------ 595 (732)
-+|-+-..|+. |....... .+ ....+|...+ .+|+.+.+..-.+.+.|.|-|++|..+-.++. +.
T Consensus 122 fLd~PvGvGFS--Ys~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~ 199 (454)
T KOG1282|consen 122 FLDQPVGVGFS--YSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKP 199 (454)
T ss_pred EEecCCcCCcc--ccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCC
Confidence 77766544433 32221111 11 1224555554 45777777777889999999999976655553 21
Q ss_pred -CcceEEEeecCcCCH
Q 004735 596 -DTFKAGASLYGVADL 610 (732)
Q Consensus 596 -~~~~a~v~~~~~~d~ 610 (732)
--+++.++..|+.|.
T Consensus 200 ~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 200 NINLKGYAIGNGLTDP 215 (454)
T ss_pred cccceEEEecCcccCc
Confidence 257999999998753
No 402
>PLN02209 serine carboxypeptidase
Probab=94.55 E-value=0.17 Score=54.72 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=78.7
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH-------H--------------HHHHHH
Q 004735 464 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-------S--------------IQYWTS 522 (732)
Q Consensus 464 i~~~~~~~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~-------~--------------~~~l~~ 522 (732)
+.+... .+..+..|++.... .....|+||++-|||+......... . ...|.+
T Consensus 44 ~~v~~~-~~~~lf~~f~es~~------~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~ 116 (437)
T PLN02209 44 IGIGEE-ENVQFFYYFIKSDK------NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK 116 (437)
T ss_pred EEecCC-CCeEEEEEEEecCC------CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh
Confidence 444333 46778878776543 1345799999999987653321100 0 001222
Q ss_pred CCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHH-hcCCCCCCcEEEEEcChHHHHHHHHHh----CC--
Q 004735 523 RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLV-GSGKADEKRLCITGGSAGGYTTLAALA----FR-- 595 (732)
Q Consensus 523 ~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~-~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p-- 595 (732)
. ..++.+|.+-..|+...-....... ...+.+|+..++.... ..+......+.|.|.|+||..+-.++. ..
T Consensus 117 ~-anllfiDqPvGtGfSy~~~~~~~~~-~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~ 194 (437)
T PLN02209 117 T-ANIIFLDQPVGSGFSYSKTPIERTS-DTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYI 194 (437)
T ss_pred c-CcEEEecCCCCCCccCCCCCCCccC-CHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccc
Confidence 2 4688888665556543211111000 1123455555555333 334455568999999999986655543 21
Q ss_pred -----CcceEEEeecCcCCHH
Q 004735 596 -----DTFKAGASLYGVADLS 611 (732)
Q Consensus 596 -----~~~~a~v~~~~~~d~~ 611 (732)
-.++++++.+|..|..
T Consensus 195 ~~~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 195 CCNPPINLQGYVLGNPITHIE 215 (437)
T ss_pred ccCCceeeeeEEecCcccChh
Confidence 2478999999988753
No 403
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=94.54 E-value=0.094 Score=54.86 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred EEEEEcCCCCCccCCcccHHHHHHHHCCCE---EEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 497 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 497 ~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~---v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
.++++||. ......+..+...+...|+. +..+++.+..+... .....+.+.+-++.+..... .
T Consensus 61 pivlVhG~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~g--a 126 (336)
T COG1075 61 PIVLVHGL--GGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKTG--A 126 (336)
T ss_pred eEEEEccC--cCCcchhhhhhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhcC--C
Confidence 68889997 33334444444446666766 77888764411110 11224445555665555533 4
Q ss_pred CcEEEEEcChHHHHHHHHHh-CC--CcceEEEeecCcC
Q 004735 574 KRLCITGGSAGGYTTLAALA-FR--DTFKAGASLYGVA 608 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~~-~p--~~~~a~v~~~~~~ 608 (732)
+++.++|||+||.++..++. .+ .+++..+.+++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 79999999999999998887 55 7888888887653
No 404
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.39 E-value=0.32 Score=50.87 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=84.5
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEc
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~ 228 (732)
.|+++...++.....+|.+-+||+.+ ..+. -.....+.....+.+|||-...|+....-+ ..|+++|.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g--~sp~--~~~~~~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~ 238 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQG--MSPI--FHASEAHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDI 238 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccC--CCcc--cchhhhccCCcCcceecCCccceEEEeccc--------ceEEEeec
Confidence 35555566666666778889999985 3222 111111123347789999888766654422 58999998
Q ss_pred CCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCcee
Q 004735 229 NGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 308 (732)
Q Consensus 229 ~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 308 (732)
...+. ...|+-..- ....+|+|+|.+|+--. -+++|+.+|+. ++...+.+....+ .++..++|
T Consensus 239 ~s~~s--~~~l~y~~P-lstvaf~~~G~~L~aG~--------s~G~~i~YD~R--~~k~Pv~v~sah~----~sVt~vaf 301 (673)
T KOG4378|consen 239 RSQAS--TDRLTYSHP-LSTVAFSECGTYLCAGN--------SKGELIAYDMR--STKAPVAVRSAHD----ASVTRVAF 301 (673)
T ss_pred ccccc--cceeeecCC-cceeeecCCceEEEeec--------CCceEEEEecc--cCCCCceEeeecc----cceeEEEe
Confidence 76542 345553332 24578999999886433 24669999997 3334466666665 66778888
Q ss_pred CCC
Q 004735 309 SSK 311 (732)
Q Consensus 309 spD 311 (732)
-+-
T Consensus 302 q~s 304 (673)
T KOG4378|consen 302 QPS 304 (673)
T ss_pred eec
Confidence 664
No 405
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=94.32 E-value=0.17 Score=54.71 Aligned_cols=131 Identities=16% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcc-cH--------------------HHHHHHHCCCEEEE
Q 004735 471 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NL--------------------SIQYWTSRGWAFVD 529 (732)
Q Consensus 471 ~g~~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~-~~--------------------~~~~l~~~G~~v~~ 529 (732)
.+..+..|++...+ .....|+||++-|||+...-... .. ....|.+ -..++.
T Consensus 48 ~~~~lfy~f~es~~------~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllf 120 (433)
T PLN03016 48 ENVQFFYYFIKSEN------NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MANIIF 120 (433)
T ss_pred CCeEEEEEEEecCC------CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCcEEE
Confidence 46678888886654 23467999999999876432110 00 0011222 257888
Q ss_pred EcCCCCCCCChhhHHhhccCCCc-ccHHHHHHHHH-HHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC-------C
Q 004735 530 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----FR-------D 596 (732)
Q Consensus 530 ~d~rG~~g~g~~~~~~~~~~~~~-~~~~D~~~~i~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p-------~ 596 (732)
+|.+-..|+... ......... ...+|+..++. |+...+......+.|.|.|+||..+-.++. .. -
T Consensus 121 iDqPvGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i 198 (433)
T PLN03016 121 LDQPVGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI 198 (433)
T ss_pred ecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence 896655555432 111111111 12345555554 333444445678999999999986655543 11 2
Q ss_pred cceEEEeecCcCCH
Q 004735 597 TFKAGASLYGVADL 610 (732)
Q Consensus 597 ~~~a~v~~~~~~d~ 610 (732)
.++++++..|..+.
T Consensus 199 nLkGi~iGNg~t~~ 212 (433)
T PLN03016 199 NLQGYMLGNPVTYM 212 (433)
T ss_pred cceeeEecCCCcCc
Confidence 57899999987654
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.29 E-value=1.5 Score=45.96 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=59.4
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-----CEEEEEeCCC
Q 004735 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-----DTVIFSNYKD 164 (732)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-----~~i~f~~~~~ 164 (732)
.+..++|.|.++++..+. .|++.++. .+ |.....+.... .+. ...+.|...+++++ ..+++.....
T Consensus 3 ~P~~~a~~pdG~l~v~e~----~G~i~~~~--~~-g~~~~~v~~~~-~v~-~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER----SGRIWVVD--KD-GSLKTPVADLP-EVF-ADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp SEEEEEEETTSCEEEEET----TTEEEEEE--TT-TEECEEEEE-T-TTB-TSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC----CceEEEEe--CC-CcCcceecccc-ccc-ccccCCcccceeccccCCCCEEEEEEEcc
Confidence 567889999667877664 46655555 22 11112221111 110 01122344556665 3443332211
Q ss_pred --------CeEEEEeCCCCCC-----CceecC-CCCC-CCCeE-eeceeecCCCCEEEEEEeccCC-----CCCCceeEE
Q 004735 165 --------QRLYKHSIDSKDS-----SPLPIT-PDYG-EPLVS-YADGIFDPRFNRYVTVREDRRQ-----DALNSTTEI 223 (732)
Q Consensus 165 --------~~l~~~d~~~~~~-----~~~~lt-~~~~-~~~~~-~~~~~~spdG~~l~~~~~~~~~-----~~~~~~~~l 223 (732)
..|+++.++. + ..+.|. ..+. ....+ -..+.|.||| +|++...+... ........|
T Consensus 74 ~~~~~~~~~~v~r~~~~~--~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i 150 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSD--GDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI 150 (331)
T ss_dssp -TSSSSEEEEEEEEEEET--TSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred cCCCCCcceeeEEEeccC--CccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence 2677777654 2 122221 1110 00122 2447899999 45555544332 222336788
Q ss_pred EEEEcCCC
Q 004735 224 VAIALNGQ 231 (732)
Q Consensus 224 ~~~d~~~~ 231 (732)
.+++.++.
T Consensus 151 lri~~dG~ 158 (331)
T PF07995_consen 151 LRIDPDGS 158 (331)
T ss_dssp EEEETTSS
T ss_pred EEecccCc
Confidence 88887754
No 407
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=94.22 E-value=0.11 Score=55.41 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhC
Q 004735 649 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 649 ~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 715 (732)
.|+.|+...-|+. .+....++.+|+..|.++.+.++++-.|+|.+- ....+.-+..++-++..|+
T Consensus 788 Pp~~i~ac~mDP~--LDD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~ 856 (880)
T KOG4388|consen 788 PPVHIVACAMDPM--LDDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLT 856 (880)
T ss_pred CCceEEEeccCcc--hhHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhC
Confidence 5788999999987 467888999999999999999999999998531 2224455666777777776
No 408
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.18 E-value=0.64 Score=51.88 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=77.5
Q ss_pred eEEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 150 ~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
|.+.+|+-+.+...|+.+-+|++.. .++..-+.. ..-+...+++|||+..+.-+- ++....++..
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl----~~lITAvcy~PdGk~avIGt~---------~G~C~fY~t~ 481 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDL----RDLITAVCYSPDGKGAVIGTF---------NGYCRFYDTE 481 (712)
T ss_pred ecccCCCcEeecccccceEEeecCc--CeeEeehhh----hhhheeEEeccCCceEEEEEe---------ccEEEEEEcc
Confidence 4445666666666677777777764 333333332 233466789999997433322 1334444444
Q ss_pred CCCccccEE--cccC----CCceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCcccc
Q 004735 230 GQNIQEPKV--LVSG----SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 302 (732)
Q Consensus 230 ~~~~~~~~~--lt~~----~~~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~ 302 (732)
+-+.+...+ +..+ ...+.+..+.| +-..|..++ +.++|.++|.. +-++ +..+.+.... .+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--------nDSrIRI~d~~-~~~l--v~KfKG~~n~--~S 548 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--------NDSRIRIYDGR-DKDL--VHKFKGFRNT--SS 548 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--------CCCceEEEecc-chhh--hhhhcccccC--Cc
Confidence 432000001 1110 11334444443 222566666 35669999875 3333 3334443211 34
Q ss_pred CcCceeCCCCc-EEEEEeccCCeeeEEEE
Q 004735 303 PTEPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 303 ~~~~~wspDg~-l~~~~~~~~g~~~l~~~ 330 (732)
.....++.||+ |+..+++ .+-.||.+
T Consensus 549 Q~~Asfs~Dgk~IVs~seD--s~VYiW~~ 575 (712)
T KOG0283|consen 549 QISASFSSDGKHIVSASED--SWVYIWKN 575 (712)
T ss_pred ceeeeEccCCCEEEEeecC--ceEEEEeC
Confidence 45678999999 8777644 34344444
No 409
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.17 E-value=0.32 Score=51.64 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCCCCCccCCcc---cHHHHHHHHCCCEEEEEcCCCCCCCChhhHH------hhccCCCcccHHHHHHHH
Q 004735 492 EEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGSTGYGREFRE------RLLGRWGIVDVNDCCSCA 562 (732)
Q Consensus 492 ~~~~P~vl~~HGg~~~~~~~~~---~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~------~~~~~~~~~~~~D~~~~i 562 (732)
....|..|++-|-+.....+.. ..+.+...+.|-.|+....|= ||.+... .++..--.....|+...|
T Consensus 83 ~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI 159 (514)
T KOG2182|consen 83 KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFI 159 (514)
T ss_pred cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHH
Confidence 3456999999774222222211 124455556799999999883 3322110 011001112378888888
Q ss_pred HHHHhcCC-CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcC
Q 004735 563 TFLVGSGK-ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 608 (732)
Q Consensus 563 ~~l~~~~~-~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~ 608 (732)
+.+..+.. -+..+++.+|.|+-|.++.++=. +|+++.++|+-++..
T Consensus 160 ~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 160 KAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 88877753 34459999999999999999877 999999998887653
No 410
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=94.13 E-value=5.8 Score=41.42 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=97.3
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE---------EcccCCCceeccccCCCCCeEEEEecc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK---------VLVSGSDFYAFPRMDPRGERMAWIEWH 264 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---------~lt~~~~~~~~p~~SPDG~~la~~~~~ 264 (732)
+..+.-|+...|+++.... .++|++|....... +. +|.....--.+..|++.-.-.. ++..
T Consensus 128 nRaRymPQnp~iVAt~t~~--------~dv~Vfd~tk~~s~-~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L-ls~~ 197 (422)
T KOG0264|consen 128 NRARYMPQNPNIVATKTSS--------GDVYVFDYTKHPSK-PKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL-LSGS 197 (422)
T ss_pred hhhhhCCCCCcEEEecCCC--------CCEEEEEeccCCCc-ccccccCCCceEEEeecccccccccccccceeE-eecc
Confidence 5556778777777765543 57888876642200 11 2221111123467888544222 2212
Q ss_pred CCCCCCCccEEEEEEecCCCc----eeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCC--eE
Q 004735 265 HPNMPWDKAELWVGYISENGD----VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EV 337 (732)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g--~~ 337 (732)
+...+.+.|+...+. ......+.+.. ..+..++|.+-.. ++-.... . ..|.++|..++ +.
T Consensus 198 ------~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~d-d--~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 198 ------DDHTICLWDINAESKEDKVVDPKTIFSGHE----DVVEDVAWHPLHEDLFGSVGD-D--GKLMIWDTRSNTSKP 264 (422)
T ss_pred ------CCCcEEEEeccccccCCccccceEEeecCC----cceehhhccccchhhheeecC-C--CeEEEEEcCCCCCCC
Confidence 234478888874333 33445566665 6778899998766 5444333 2 34666777642 22
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEE
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVE 416 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~ 416 (732)
...... ...+.+. +.|-+ -+..|+.+...++.-.||-+.-=...+..+......|..+ .++...-++.
T Consensus 265 ~~~~~a---h~~~vn~-----~~fnp---~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 265 SHSVKA---HSAEVNC-----VAFNP---FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred cccccc---cCCceeE-----EEeCC---CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 222211 1222222 23322 4556776666666666663321122333444445566666 3444333333
Q ss_pred EeCCC
Q 004735 417 GASGV 421 (732)
Q Consensus 417 ~~~~~ 421 (732)
+++.+
T Consensus 334 SSg~D 338 (422)
T KOG0264|consen 334 SSGTD 338 (422)
T ss_pred ecccC
Confidence 33333
No 411
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.05 E-value=1 Score=47.31 Aligned_cols=197 Identities=11% Similarity=0.048 Sum_probs=106.3
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEeccCCCCCC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 270 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~ 270 (732)
.....+|||..-+=+++.... .-+|| +..+-. +.. +..-.+-..+..|-.||+-||.- +..
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~-------rvqly--~~~~~~---~~k~~srFk~~v~s~~fR~DG~LlaaG--D~s---- 89 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSV-------RVQLY--SSVTRS---VRKTFSRFKDVVYSVDFRSDGRLLAAG--DES---- 89 (487)
T ss_pred cceeEecCCCCCCceEEeccc-------EEEEE--ecchhh---hhhhHHhhccceeEEEeecCCeEEEcc--CCc----
Confidence 345667888443223333211 23444 444433 222 33444455667888899966532 443
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEE-EecccccccC
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFS 348 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~ 348 (732)
+.+-++|.. +-.+ ++.+.+.. ..+....|+|++. ++...++ ..-..+ +|+++.... .|....--+.
T Consensus 90 --G~V~vfD~k-~r~i--LR~~~ah~----apv~~~~f~~~d~t~l~s~sD-d~v~k~--~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 90 --GHVKVFDMK-SRVI--LRQLYAHQ----APVHVTKFSPQDNTMLVSGSD-DKVVKY--WDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred --CcEEEeccc-cHHH--HHHHhhcc----CceeEEEecccCCeEEEecCC-CceEEE--EEcCCcEEEEEecCCcceeE
Confidence 348888865 3222 34444443 4456778999887 4444433 333333 456665542 2222222233
Q ss_pred CCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEE
Q 004735 349 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVA 427 (732)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly 427 (732)
...|++ -+++++++..-||.-+||-....+.....+.. ...|..+ .-+.+.++..++++ .+-
T Consensus 158 ~g~~~~------------~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe~vl~lpsgs~iasAgGn----~vk 220 (487)
T KOG0310|consen 158 CGDISP------------ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVESVLALPSGSLIASAGGN----SVK 220 (487)
T ss_pred eecccc------------CCCeEEEecCCCceEEEEEeccCCceeEEecC-CCceeeEEEcCCCCEEEEcCCC----eEE
Confidence 345554 56778888888999889866555433333433 3345555 44555666665543 577
Q ss_pred EEEcCCCc
Q 004735 428 KVTLDDHK 435 (732)
Q Consensus 428 ~~dl~~~~ 435 (732)
++|+-+|.
T Consensus 221 VWDl~~G~ 228 (487)
T KOG0310|consen 221 VWDLTTGG 228 (487)
T ss_pred EEEecCCc
Confidence 88887543
No 412
>PLN02193 nitrile-specifier protein
Probab=94.04 E-value=12 Score=41.41 Aligned_cols=211 Identities=10% Similarity=-0.024 Sum_probs=94.3
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC---
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG--- 242 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~--- 242 (732)
++|++|+.+ ..-+.+......+..+....+..--++.|+.+...... ...+++|++|+.+.++ +++...
T Consensus 194 ~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~---~~~ndv~~yD~~t~~W---~~l~~~~~~ 265 (470)
T PLN02193 194 HLYVFDLET--RTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS---RQYNGFYSFDTTTNEW---KLLTPVEEG 265 (470)
T ss_pred cEEEEECCC--CEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC---CCCccEEEEECCCCEE---EEcCcCCCC
Confidence 699999986 54444432110111111111111123444444332211 1246899999998774 333221
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEecc-
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK- 321 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~- 321 (732)
+...........+.+|+......... ...+++++|+. +.+...+......... .. ....-.-++++|+.....
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~~--~~~~~~~yd~~-t~~W~~~~~~~~~~~~--R~-~~~~~~~~gkiyviGG~~g 339 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSATA--RLKTLDSYNIV-DKKWFHCSTPGDSFSI--RG-GAGLEVVQGKVWVVYGFNG 339 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCCC--CcceEEEEECC-CCEEEeCCCCCCCCCC--CC-CcEEEEECCcEEEEECCCC
Confidence 11111111122344565544222111 23568888887 5544222110000000 00 111122356665554321
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEEC---------C--EEEEEEEECCC
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN---------G--RSYLGILDDFG 390 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~---------g--~~~ly~~~~~~ 390 (732)
.....++++|+++.+.+.+.... ....+... ...... +++.+++.-... + ...+|.+|+.+
T Consensus 340 ~~~~dv~~yD~~t~~W~~~~~~g-~~P~~R~~---~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 340 CEVDDVHYYDPVQDKWTQVETFG-VRPSERSV---FASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred CccCceEEEECCCCEEEEeccCC-CCCCCcce---eEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 11356899999999888775321 00011111 111222 444333333211 1 13589999999
Q ss_pred CceEEecc
Q 004735 391 HSLSLLDI 398 (732)
Q Consensus 391 ~~~~~lt~ 398 (732)
.+++.+..
T Consensus 412 ~~W~~~~~ 419 (470)
T PLN02193 412 LQWERLDK 419 (470)
T ss_pred CEEEEccc
Confidence 99988763
No 413
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.04 E-value=9.8 Score=40.50 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=51.2
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeE
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL 327 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l 327 (732)
..|.|-| .||.-. .....+++|.+ +... +.+-.+ . ..+.-++++|||. |++-+. .+...|
T Consensus 413 ~~fhpsg-~va~Gt--------~~G~w~V~d~e-~~~l--v~~~~d-~----~~ls~v~ysp~G~~lAvgs~--d~~iyi 473 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGT--------ATGRWFVLDTE-TQDL--VTIHTD-N----EQLSVVRYSPDGAFLAVGSH--DNHIYI 473 (626)
T ss_pred eeccCcc-eEEEee--------ccceEEEEecc-ccee--EEEEec-C----CceEEEEEcCCCCEEEEecC--CCeEEE
Confidence 3466777 555432 23457888887 4333 232233 2 4467789999999 554443 477788
Q ss_pred EEEeccCCeEEEecccc-cccCCCceee
Q 004735 328 HKWIESNNEVLAIYSLD-AEFSRPLWVF 354 (732)
Q Consensus 328 ~~~d~~~g~~~~l~~~~-~~~~~~~w~~ 354 (732)
|+++.++.+..++-.-. .-.....|+.
T Consensus 474 y~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 474 YRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred EEECCCCcEEEEeeeecCceeEEeeecC
Confidence 99987776655543211 3344556765
No 414
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.96 E-value=17 Score=43.10 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=40.7
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEec
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
..-.+.|--|+..|.++.. .++|.++|+.+.. ...+..-...+...+||||++.++++..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~---------~G~iilvd~et~~---~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITA---------LGDIILVDPETLE---LEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEec---------CCcEEEEcccccc---eeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 4455567778887655544 2567777877765 4444444445667899999999999873
No 415
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=93.82 E-value=4.3 Score=41.46 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=113.0
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceee-cCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcccc
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEP 236 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~-spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 236 (732)
+++...++.+-++|+.+ ....++... .......+| .++...-.|+..... . .-.||.++..... .
T Consensus 118 IltgsYDg~~riWd~~G--k~~~~~~Gh----t~~ik~v~~v~~n~~~~~fvsas~D-q----tl~Lw~~~~~~~~---~ 183 (423)
T KOG0313|consen 118 ILTGSYDGTSRIWDLKG--KSIKTIVGH----TGPIKSVAWVIKNSSSCLFVSASMD-Q----TLRLWKWNVGENK---V 183 (423)
T ss_pred EEEeecCCeeEEEecCC--ceEEEEecC----CcceeeeEEEecCCccceEEEecCC-c----eEEEEEecCchhh---h
Confidence 44555677788889885 555566654 233333333 333331123222111 0 3567777765443 2
Q ss_pred EEcc--cC-CCceeccccCCCCCeEEEEeccCCCCCCCccEEEE--EEecC------------------CCceeeeEEec
Q 004735 237 KVLV--SG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV--GYISE------------------NGDVYKRVCVA 293 (732)
Q Consensus 237 ~~lt--~~-~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v--~d~~~------------------~g~~~~~~~~~ 293 (732)
..+. .| ...+...+..+||.+++-.+||..- .||- .+... .|+-..+..+.
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l------kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~ 257 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML------KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE 257 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEeeccccee------eecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence 2222 12 2344556778999988777765532 1222 11110 11111233444
Q ss_pred CCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEE
Q 004735 294 GFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIA 372 (732)
Q Consensus 294 ~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 372 (732)
+.- ..+..+.|++. ..+|.... ...|-++|+.+|... .++.. ..+......+ ..+ |+
T Consensus 258 GHt----~~Vs~V~w~d~-~v~yS~Sw---DHTIk~WDletg~~~~~~~~~-ksl~~i~~~~------------~~~-Ll 315 (423)
T KOG0313|consen 258 GHT----EPVSSVVWSDA-TVIYSVSW---DHTIKVWDLETGGLKSTLTTN-KSLNCISYSP------------LSK-LL 315 (423)
T ss_pred ccc----cceeeEEEcCC-CceEeecc---cceEEEEEeecccceeeeecC-cceeEeeccc------------ccc-ee
Confidence 443 66788899874 34444433 246888898886543 33322 1111111111 223 44
Q ss_pred EEEEECCEEEEEEEECCCCc--e--EEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEE
Q 004735 373 CSYRQNGRSYLGILDDFGHS--L--SLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKV 429 (732)
Q Consensus 373 ~~s~~~g~~~ly~~~~~~~~--~--~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~ 429 (732)
.+...+ .+|-++|+.++. + .++......|..+ ..+.+.+.|...+-++...+|-+
T Consensus 316 ~~gssd--r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 316 ASGSSD--RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred eecCCC--CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 443333 456666876653 2 3455555667777 45555666666666555444443
No 416
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=3.8 Score=47.88 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=64.2
Q ss_pred CceeCCCCc--EEEEEeccCC-eeeEEEEeccCC-eEEEecccccccCC-CceeecccceeeeeecCCCCEEEEEEEE--
Q 004735 305 EPKWSSKGE--LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ-- 377 (732)
Q Consensus 305 ~~~wspDg~--l~~~~~~~~g-~~~l~~~d~~~g-~~~~l~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~l~~~s~~-- 377 (732)
.+.++.|+. +++.... .+ ..++..+...++ ..+.++.+.+++.. ..|. . +.+.++|.+..
T Consensus 344 ~~~~~~d~~~~~~~~~~~-~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~---------~---~~~~i~f~~~~~~ 410 (755)
T KOG2100|consen 344 EPVFSSDGSSYLKVDSVS-DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYD---------K---DSNRIYFDAYEED 410 (755)
T ss_pred cceEeecCCceeEEEeec-cCCEEEEEEEEcCCCCccccccccceEEEEecccc---------C---CCceEEEEecCCC
Confidence 467888875 4444444 44 677777766666 55556544433321 1111 1 66788888765
Q ss_pred CCEEEEEEEECCCCceEEeccCCC----ceEEee--EeCCEEEEEEeCCCCC
Q 004735 378 NGRSYLGILDDFGHSLSLLDIPFT----DIDNIT--LGNDCLFVEGASGVEP 423 (732)
Q Consensus 378 ~g~~~ly~~~~~~~~~~~lt~~~~----~v~~~~--~~~~~~~~~~~~~~~~ 423 (732)
.+..+||.+++.+...+.+|.... .+-+++ ...+.++..+..+..|
T Consensus 411 ~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p 462 (755)
T KOG2100|consen 411 PSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVP 462 (755)
T ss_pred CCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCC
Confidence 578999999999988877876543 233332 2234555566666655
No 417
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.73 E-value=9.8 Score=39.70 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=68.3
Q ss_pred ECCEEEEEeCCC------CeEEEEeCCCCCCCceecC-CCCC----------CCCeEeeceeecCCCCEEEEEEeccCCC
Q 004735 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPIT-PDYG----------EPLVSYADGIFDPRFNRYVTVREDRRQD 215 (732)
Q Consensus 153 ~~~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt-~~~~----------~~~~~~~~~~~spdG~~l~~~~~~~~~~ 215 (732)
.++.++++.+.. ..|+.++.++ ...+.+. +..- ....-+-..+++|||+.|+.+.+..-..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDG--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCC--cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 566788888888 7999999884 3334332 1100 0111234578999999877776654211
Q ss_pred C-------CCceeEEEEEEcCC-CCccccEEcc---c------CCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEE
Q 004735 216 A-------LNSTTEIVAIALNG-QNIQEPKVLV---S------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 278 (732)
Q Consensus 216 ~-------~~~~~~l~~~d~~~-~~~~~~~~lt---~------~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~ 278 (732)
+ ......|+.+|..+ +.. ..+.. . .........+-|||+.| .+..+....-....+||.+
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~lL-vLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGRLL-VLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCcEE-EEEccCCCCccceEEEEEE
Confidence 1 11136788888875 320 12211 1 12223445677888844 4542321111135678888
Q ss_pred Eec
Q 004735 279 YIS 281 (732)
Q Consensus 279 d~~ 281 (732)
++.
T Consensus 249 ~l~ 251 (326)
T PF13449_consen 249 DLS 251 (326)
T ss_pred Ecc
Confidence 876
No 418
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=93.52 E-value=4.3 Score=44.75 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=88.1
Q ss_pred cccCCCceeccccCCCCCeEEEEeccCCCCCC---CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 239 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW---DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 239 lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~---~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
+....+.+.+..|+|+|..|.-.+.|..-+-| .++-||+-.+. -|+.. +.. .+.....|+|++..+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR-lGe~g------g~a----~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR-LGEVG------GSA----GGFWGGLWSPNSNVI 331 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE-eeccc------ccc----cceeeEEEcCCCCEE
Confidence 44556788889999999878766655543323 23345665544 33331 222 456678899999854
Q ss_pred EEEeccCCeeeEEEEeccCCeEEEe--cc-cccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLAI--YS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~l--~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
....+ .|.+++|. +-+.....+. +. .-..+.+..|.+ .|. ++.+...|...+|+.---...+
T Consensus 332 i~~g~-~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~p------------sGe-flLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 332 IAHGR-TGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDP------------SGE-FLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred EEecc-cCcEEEEe-ccCccceeeccccccccccceeeeecC------------CCC-EEEEeccccceeeecccccccc
Confidence 45555 78899998 3333333322 22 223445566664 555 5555555666666643311223
Q ss_pred eEEeccCC---CceEEeeEeCCEEEEEEeCCCCCcEEEE
Q 004735 393 LSLLDIPF---TDIDNITLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 393 ~~~lt~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
+..+..|+ .++..+..=++.+.|+++......++|.
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 45565553 2344442112245555555544444443
No 419
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=93.49 E-value=0.25 Score=39.95 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=44.0
Q ss_pred ceeecCCCCEEEEEEeccCCC---------CCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEec
Q 004735 195 DGIFDPRFNRYVTVREDRRQD---------ALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~~---------~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
+..+++++..|+|+.....-. ......+|+.+|+.+++ .+.|..+-.+.++.+.|||++.|++...
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~---~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE---TTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE---EEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe---EEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 456777755566664432211 01235899999999998 8888888888899999999999988773
No 420
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=93.46 E-value=3.3 Score=40.75 Aligned_cols=111 Identities=12% Similarity=0.197 Sum_probs=68.1
Q ss_pred EeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccC----CCceeccccCC--CCCeEEEEeccC
Q 004735 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSG----SDFYAFPRMDP--RGERMAWIEWHH 265 (732)
Q Consensus 192 ~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~----~~~~~~p~~SP--DG~~la~~~~~~ 265 (732)
+..-..|-|++.+++...+ ++|.+++++.+.......+..+ .....+-+||| ||..++-++
T Consensus 125 ~i~cvew~Pns~klasm~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--- 191 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--- 191 (370)
T ss_pred ceeeEEEcCCCCeeEEecc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC---
Confidence 4456779999999888764 5788888887651101112211 22334578999 999988765
Q ss_pred CCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE
Q 004735 266 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 328 (732)
Q Consensus 266 ~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~ 328 (732)
.+.|+.+|+. +-+ +...+.+.. . ..+..+.+.|+-+ ++.+..+ .|+-+||
T Consensus 192 ------d~tl~~~D~R-T~~--~~~sI~dAH-g--q~vrdlDfNpnkq~~lvt~gD-dgyvriW 242 (370)
T KOG1007|consen 192 ------DSTLQFWDLR-TMK--KNNSIEDAH-G--QRVRDLDFNPNKQHILVTCGD-DGYVRIW 242 (370)
T ss_pred ------CCcEEEEEcc-chh--hhcchhhhh-c--ceeeeccCCCCceEEEEEcCC-CccEEEE
Confidence 3448888886 321 112222221 1 3456778889877 6666665 6776666
No 421
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.31 E-value=3.4 Score=42.12 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=68.7
Q ss_pred eEeeceeecCCC----CEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC--------------------Cce
Q 004735 191 VSYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS--------------------DFY 246 (732)
Q Consensus 191 ~~~~~~~~spdG----~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~--------------------~~~ 246 (732)
..+.++++.... +..+|+.+... ..|.++|+.+++ ..++..+. +..
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~-------~glIV~dl~~~~---s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~ 130 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGG-------PGLIVYDLATGK---SWRVLHNSFSPDPDAGPFTIGGESFQWPDGI 130 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTT-------CEEEEEETTTTE---EEEEETCGCTTS-SSEEEEETTEEEEETTSE
T ss_pred cccceEEEEccCCCCcceEEEEeCCCc-------CcEEEEEccCCc---EEEEecCCcceeccccceeccCceEecCCCc
Confidence 445666665522 25688877542 589999999988 56654321 001
Q ss_pred eccc---cCCCCCeEEEEeccCCCCCCCccEEEEEEec--CCCcee-------eeEEecCCCCCccccCcCceeCCCCcE
Q 004735 247 AFPR---MDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVY-------KRVCVAGFDPTIVESPTEPKWSSKGEL 314 (732)
Q Consensus 247 ~~p~---~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~--~~g~~~-------~~~~~~~~~~~~~~~~~~~~wspDg~l 314 (732)
.+.+ .+|||++|+|.... ...+|.++.+ .+.... .++.+.... ........+++|.|
T Consensus 131 ~gial~~~~~d~r~LYf~~ls-------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~~s~g~~~D~~G~l 199 (287)
T PF03022_consen 131 FGIALSPISPDGRWLYFHPLS-------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----SQSDGMAIDPNGNL 199 (287)
T ss_dssp EEEEE-TTSTTS-EEEEEETT--------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SECEEEEETTTEE
T ss_pred cccccCCCCCCccEEEEEeCC-------CCcEEEEEHHHhhCccccccccccccceeccccC----CCCceEEECCCCcE
Confidence 1122 36699999998732 3447877654 122111 112222111 12235667777767
Q ss_pred EEEEeccCCeeeEEEEeccC----CeEEEec
Q 004735 315 FFVTDRKNGFWNLHKWIESN----NEVLAIY 341 (732)
Q Consensus 315 ~~~~~~~~g~~~l~~~d~~~----g~~~~l~ 341 (732)
||..- ....|+++++.+ .+.+.|.
T Consensus 200 y~~~~---~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 200 YFTDV---EQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp EEEEC---CCTEEEEEETTTSB-GCCEEEEE
T ss_pred EEecC---CCCeEEEEeCCCCcCccchheeE
Confidence 66543 345689999876 3444454
No 422
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=93.30 E-value=0.3 Score=52.33 Aligned_cols=82 Identities=12% Similarity=0.024 Sum_probs=55.6
Q ss_pred cccHHHHHHHHCCCE----EEE--EcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHH
Q 004735 512 ILNLSIQYWTSRGWA----FVD--VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 585 (732)
Q Consensus 512 ~~~~~~~~l~~~G~~----v~~--~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG 585 (732)
.|..+++.|.+.||. +++ .|.|-+..... .-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~~~------------~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPAERD------------EYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchhhHH------------HHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 567788999998874 232 56664332000 11345666666665542 6799999999999
Q ss_pred HHHHHHHh-CC------CcceEEEeecCcC
Q 004735 586 YTTLAALA-FR------DTFKAGASLYGVA 608 (732)
Q Consensus 586 ~~a~~~~~-~p------~~~~a~v~~~~~~ 608 (732)
.++..++. .+ +.++..|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 99999887 42 2588888887754
No 423
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=9.2 Score=42.23 Aligned_cols=70 Identities=13% Similarity=0.005 Sum_probs=48.6
Q ss_pred CCCEEEEEEEECC--EEEEEEEECC-CCceEEeccCCCceE-EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcc
Q 004735 367 EKNLIACSYRQNG--RSYLGILDDF-GHSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 367 ~~~~l~~~s~~~g--~~~ly~~~~~-~~~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~ 436 (732)
..+.+||...+++ ..|||++... .|+..+||.+..... .++..-+.++...++...|+.+-++.+.+++.
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~ 587 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEN 587 (867)
T ss_pred cceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCcc
Confidence 4567889988876 4789999988 889999998644322 23333344667777888888866666665543
No 424
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=93.16 E-value=0.7 Score=47.31 Aligned_cols=58 Identities=5% Similarity=0.017 Sum_probs=42.7
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
....+||||+..|.+.+.+. .++++|+. .|.+ ...+.+.+ .++..++|.|-++ +.-.+
T Consensus 126 iydL~Ws~d~~~l~s~s~dn--------s~~l~Dv~-~G~l--~~~~~dh~----~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSVDN--------SVRLWDVH-AGQL--LAILDDHE----HYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhhhhccCCCceeeeeeccc--------eEEEEEec-ccee--Eeeccccc----cccceeecchhhhhhhhhc
Confidence 45689999999998877443 47888888 6765 55556655 8899999999887 44333
No 425
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.15 E-value=17 Score=40.62 Aligned_cols=132 Identities=10% Similarity=-0.013 Sum_probs=70.0
Q ss_pred CeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC
Q 004735 165 QRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS 243 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~ 243 (732)
+-+-++|.++ -+. .++.-+ .+.....++|||++++..+-+.... ..+..++..... . .+.-+.
T Consensus 215 ~~vSvID~et--meV~~qV~Vd-----gnpd~v~~spdGk~afvTsyNsE~G-----~tl~em~a~e~d---~-~vvfni 278 (635)
T PRK02888 215 SLFTAVDAET--MEVAWQVMVD-----GNLDNVDTDYDGKYAFSTCYNSEEG-----VTLAEMMAAERD---W-VVVFNI 278 (635)
T ss_pred EEEEEEECcc--ceEEEEEEeC-----CCcccceECCCCCEEEEeccCcccC-----cceeeeccccCc---e-EEEEch
Confidence 4566777765 222 233322 1224456999999865554322111 355555553322 1 111111
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC----C-ceeeeEEecCCCCCccccCcCceeCCCCcEEEEE
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN----G-DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVT 318 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~ 318 (732)
. ...++.+||++.. +. ...+-++|.. + + ++ ...++-. .++..+..||||+.++++
T Consensus 279 ~--~iea~vkdGK~~~-V~---------gn~V~VID~~-t~~~~~~~v--~~yIPVG-----KsPHGV~vSPDGkylyVa 338 (635)
T PRK02888 279 A--RIEEAVKAGKFKT-IG---------GSKVPVVDGR-KAANAGSAL--TRYVPVP-----KNPHGVNTSPDGKYFIAN 338 (635)
T ss_pred H--HHHHhhhCCCEEE-EC---------CCEEEEEECC-ccccCCcce--EEEEECC-----CCccceEECCCCCEEEEe
Confidence 0 1236788999654 42 3458888876 4 2 22 2333332 456789999999955555
Q ss_pred eccCCeeeEEEEeccC
Q 004735 319 DRKNGFWNLHKWIESN 334 (732)
Q Consensus 319 ~~~~g~~~l~~~d~~~ 334 (732)
+. ....+-++|.++
T Consensus 339 nk--lS~tVSVIDv~k 352 (635)
T PRK02888 339 GK--LSPTVTVIDVRK 352 (635)
T ss_pred CC--CCCcEEEEEChh
Confidence 54 233455667655
No 426
>PHA03098 kelch-like protein; Provisional
Probab=93.14 E-value=5.4 Score=44.97 Aligned_cols=192 Identities=6% Similarity=-0.102 Sum_probs=95.4
Q ss_pred eeEEEEEEcCCCCccccEEcccCCCceecc-ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCC
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 298 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p-~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~ 298 (732)
..+++.+|+.+++ -..+..-....... ..+-+| +|+.+....... ....++++|.. +++.+....++..
T Consensus 310 ~~~v~~yd~~~~~---W~~~~~~~~~R~~~~~~~~~~-~lyv~GG~~~~~--~~~~v~~yd~~-~~~W~~~~~lp~~--- 379 (534)
T PHA03098 310 VNSVVSYDTKTKS---WNKVPELIYPRKNPGVTVFNN-RIYVIGGIYNSI--SLNTVESWKPG-ESKWREEPPLIFP--- 379 (534)
T ss_pred eccEEEEeCCCCe---eeECCCCCcccccceEEEECC-EEEEEeCCCCCE--ecceEEEEcCC-CCceeeCCCcCcC---
Confidence 3578999998877 34443222111111 112244 465554322111 23458888887 5554322212111
Q ss_pred ccccCcCceeCCCCcEEEEEeccCC---eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEE
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 375 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s 375 (732)
..... .-.-+|++|.......+ ...++++|+.+++.+.+.+... +... ..... -++.||+..
T Consensus 380 --r~~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~r~~---~~~~~-----~~~~iyv~G 444 (534)
T PHA03098 380 --RYNPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI----SHYG---GCAIY-----HDGKIYVIG 444 (534)
T ss_pred --Cccce-EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc----cccC---ceEEE-----ECCEEEEEC
Confidence 11111 12235666665432111 2468899999988877653221 1110 01111 234555543
Q ss_pred EEC------CEEEEEEEECCCCceEEeccCCCc--eEEeeEeCCEEEEEEeCCCC--CcEEEEEEcCCCcc
Q 004735 376 RQN------GRSYLGILDDFGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKL 436 (732)
Q Consensus 376 ~~~------g~~~ly~~~~~~~~~~~lt~~~~~--v~~~~~~~~~~~~~~~~~~~--~~~ly~~dl~~~~~ 436 (732)
... ....++++|+.+++++.+...... ...+..-+++++++++.... ...++.+|+++++.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 221 134599999999999887642211 11122336677766653322 24588888887764
No 427
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.02 E-value=11 Score=39.67 Aligned_cols=152 Identities=11% Similarity=0.069 Sum_probs=68.7
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeecee--ecCCCCEE--EEEEeccCCCCCCceeEEEEEEcCCCC
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI--FDPRFNRY--VTVREDRRQDALNSTTEIVAIALNGQN 232 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~--~spdG~~l--~~~~~~~~~~~~~~~~~l~~~d~~~~~ 232 (732)
+++...+.+.|+++|+++ ...+.+..+ ...--|.. |.-.|+.+ +.++++..+.. .-.||.+|.+++.
T Consensus 70 lIigTdK~~GL~VYdL~G--k~lq~~~~G----r~NNVDvrygf~l~g~~vDlavas~R~~g~n---~l~~f~id~~~g~ 140 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDG--KELQSLPVG----RPNNVDVRYGFPLNGKTVDLAVASDRSDGRN---SLRLFRIDPDTGE 140 (381)
T ss_dssp EEEEEETTTEEEEEETTS---EEEEE-SS-----EEEEEEEEEEEETTEEEEEEEEEE-CCCT----EEEEEEEETTTTE
T ss_pred eEEEEeCCCCEEEEcCCC--cEEEeecCC----CcceeeeecceecCCceEEEEEEecCcCCCC---eEEEEEecCCCCc
Confidence 445555667899999996 666666543 11111211 22356664 34444321111 2578999987776
Q ss_pred ccccEEcccCC-------Cceecccc--CC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCce--eeeEEecCCCCCcc
Q 004735 233 IQEPKVLVSGS-------DFYAFPRM--DP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDV--YKRVCVAGFDPTIV 300 (732)
Q Consensus 233 ~~~~~~lt~~~-------~~~~~p~~--SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~--~~~~~~~~~~~~~~ 300 (732)
.+.++... .-..+.++ || +|+.-+|+...+ + ..+.|.+..+.+|.+ +.++.+.-.
T Consensus 141 ---L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~-G----~~~Qy~L~~~~~g~v~~~lVR~f~~~----- 207 (381)
T PF02333_consen 141 ---LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKD-G----RVEQYELTDDGDGKVSATLVREFKVG----- 207 (381)
T ss_dssp ---EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETT-S----EEEEEEEEE-TTSSEEEEEEEEEE-S-----
T ss_pred ---ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCC-c----eEEEEEEEeCCCCcEeeEEEEEecCC-----
Confidence 66655321 11223443 54 677777776333 2 233344433324543 223333322
Q ss_pred ccCcCceeCCCCcEEEEEeccCCeeeEEEEecc
Q 004735 301 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIES 333 (732)
Q Consensus 301 ~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~ 333 (732)
..+....-...-..+|......| ||+++.+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~G---IW~y~Ae 237 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVG---IWRYDAE 237 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTE---EEEEESS
T ss_pred CcceEEEEecccCCEEEecCccE---EEEEecC
Confidence 11233344333225555555233 6666554
No 428
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=92.89 E-value=0.1 Score=49.49 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCCCCCChh-hHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 524 GWAFVDVNYGGSTGYGRE-FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 524 G~~v~~~d~rG~~g~g~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
-..|++|-||-.+-+... .............+.|+.+|.++.+++.. +...++|+|||.|+.+...++.
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~ 114 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLK 114 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHH
Confidence 368999999854322111 00000111122348999999998888743 3468999999999999999987
No 429
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.86 E-value=18 Score=40.10 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=82.3
Q ss_pred ceeecCCCCEEEEEEeccCC---------CCCCceeEEEEEEcCCCCccccEEcccCC----CceeccccC----CCCC-
Q 004735 195 DGIFDPRFNRYVTVREDRRQ---------DALNSTTEIVAIALNGQNIQEPKVLVSGS----DFYAFPRMD----PRGE- 256 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~~---------~~~~~~~~l~~~d~~~~~~~~~~~lt~~~----~~~~~p~~S----PDG~- 256 (732)
.+.+++.+..|++-..+... .+......|+.+|+++|+.....++.... .....|.+. =||+
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 35566666765554432210 01112358999999999821112222111 111223322 1343
Q ss_pred -eEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec--------------c
Q 004735 257 -RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR--------------K 321 (732)
Q Consensus 257 -~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~--------------~ 321 (732)
.++|+.. ....|+.+|.. +|+..+....... .+..+| +.+|+.... .
T Consensus 301 ~~~V~~g~-------~~G~l~ald~~-tG~~~W~~~~~~~---------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~ 362 (488)
T cd00216 301 VPAIVHAP-------KNGFFYVLDRT-TGKLISARPEVEQ---------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKK 362 (488)
T ss_pred eEEEEEEC-------CCceEEEEECC-CCcEeeEeEeecc---------ccccCC-ceEEEccccccccCcccccCCCCC
Confidence 3455542 13459999998 8887554433211 233344 335543211 0
Q ss_pred CCeeeEEEEeccCCeEEEeccccc-----ccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceE
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDA-----EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 394 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~ 394 (732)
.....|+.+|+.+|+..--.+... ....+.+. ..... .++.+|+.+ .+| +||.+|.++|++.
T Consensus 363 ~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~---~~~~~-----~g~~v~~g~-~dG--~l~ald~~tG~~l 429 (488)
T cd00216 363 PGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG---GSLAT-----AGNLVFAGA-ADG--YFRAFDATTGKEL 429 (488)
T ss_pred CCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC---cceEe-----cCCeEEEEC-CCC--eEEEEECCCCcee
Confidence 123468899999887542221110 00011111 01111 456666654 343 6899999998754
No 430
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=92.86 E-value=2.7 Score=47.29 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=39.2
Q ss_pred CccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEE
Q 004735 271 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 271 ~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
+...|.++|+. +-++ ++.+.+.. ..+..+.+||||+ |+..+.+ + .|..+|+.++....
T Consensus 554 ddf~I~vvD~~-t~kv--vR~f~gh~----nritd~~FS~DgrWlisasmD--~--tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 554 DDFSIRVVDVV-TRKV--VREFWGHG----NRITDMTFSPDGRWLISASMD--S--TIRTWDLPTGTLID 612 (910)
T ss_pred CceeEEEEEch-hhhh--hHHhhccc----cceeeeEeCCCCcEEEEeecC--C--cEEEEeccCcceee
Confidence 34568888876 4444 55566654 5678999999999 6544443 3 46677888876543
No 431
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.79 E-value=0.43 Score=48.06 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=86.9
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCcc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 273 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~ 273 (732)
....|+|--..|+.++..+ ..|+++|+..+.. .+.+.- .-..+..+|+| . -.-|+..++. .
T Consensus 191 ~svkfNpvETsILas~~sD--------rsIvLyD~R~~~P--l~KVi~-~mRTN~IswnP-e-afnF~~a~ED------~ 251 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASD--------RSIVLYDLRQASP--LKKVIL-TMRTNTICWNP-E-AFNFVAANED------H 251 (433)
T ss_pred eEEecCCCcchheeeeccC--------CceEEEecccCCc--cceeee-eccccceecCc-c-ccceeecccc------c
Confidence 4456778777777766433 5899999987761 222221 12345689999 3 3456664553 2
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEec--ccccccCCC
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRP 350 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~ 350 (732)
.||.+|+..-.+ .+.+..+.. ..+-++.+||-|+ ++-.+-+ .. |-++....+..|.+. .-...+...
T Consensus 252 nlY~~DmR~l~~--p~~v~~dhv----sAV~dVdfsptG~EfvsgsyD--ks--IRIf~~~~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 252 NLYTYDMRNLSR--PLNVHKDHV----SAVMDVDFSPTGQEFVSGSYD--KS--IRIFPVNHGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred cceehhhhhhcc--cchhhcccc----eeEEEeccCCCcchhcccccc--ce--EEEeecCCCcchhhhhHhhhheeeEE
Confidence 389998762111 233334433 4566888999999 5533322 33 444455556555554 222233344
Q ss_pred ceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEEC
Q 004735 351 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 388 (732)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~ 388 (732)
.|+. |. .++++...++.-+||.-..
T Consensus 322 k~S~------------Ds-kyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 322 KYSM------------DS-KYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEec------------cc-cEEEecCCCcceeeeecch
Confidence 5663 44 4555666677788887543
No 432
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=1.1 Score=46.04 Aligned_cols=143 Identities=12% Similarity=0.071 Sum_probs=76.7
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCee
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 325 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~ 325 (732)
.-.++++||+.|+-.. ....|.++++. +-.. +....... ..+.++.|||||+ |+.++.. ..
T Consensus 148 k~vaf~~~gs~latgg--------~dg~lRv~~~P-s~~t--~l~e~~~~----~eV~DL~FS~dgk~lasig~d---~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG--------TDGTLRVWEWP-SMLT--ILEEIAHH----AEVKDLDFSPDGKFLASIGAD---SA 209 (398)
T ss_pred eEEEEcCCCCEeeecc--------ccceEEEEecC-cchh--hhhhHhhc----CccccceeCCCCcEEEEecCC---ce
Confidence 3467899999887654 23447777754 2111 11112222 5678999999999 6655432 33
Q ss_pred eEEEEeccCC-eEEEecccccccCCCceeecccceeeeeecCCC---CEEEEEE-EECCEEEEEEEECCCC----ceEEe
Q 004735 326 NLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK---NLIACSY-RQNGRSYLGILDDFGH----SLSLL 396 (732)
Q Consensus 326 ~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~l~~~s-~~~g~~~ly~~~~~~~----~~~~l 396 (732)
.+ ++.++| .+...++. ...|.. ....|.. ++ ..+++.. .+.+...++.+.+..+ +.++.
T Consensus 210 ~V--W~~~~g~~~a~~t~~-----~k~~~~--~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~ 277 (398)
T KOG0771|consen 210 RV--WSVNTGAALARKTPF-----SKDEMF--SSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK 277 (398)
T ss_pred EE--EEeccCchhhhcCCc-----ccchhh--hhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh
Confidence 44 455555 23333322 112221 1223332 22 2233333 2334445555555444 55566
Q ss_pred ccCCCceEEe-eEeCCEEEEEEeC
Q 004735 397 DIPFTDIDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 397 t~~~~~v~~~-~~~~~~~~~~~~~ 419 (732)
...+..++.+ ++++++++.+++.
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEecc
Confidence 6667788888 6778888888775
No 433
>PHA02713 hypothetical protein; Provisional
Probab=92.74 E-value=11 Score=42.67 Aligned_cols=237 Identities=8% Similarity=-0.063 Sum_probs=117.1
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCc
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDF 245 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~ 245 (732)
.++.+|+.+ +.-..+++-+.. ...+. ...-+ +.|+.+...... ......++.+|+.++.+ ..+..-...
T Consensus 273 ~v~~yd~~~--~~W~~l~~mp~~-r~~~~--~a~l~-~~IYviGG~~~~--~~~~~~v~~Yd~~~n~W---~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINT--MEYSVISTIPNH-IINYA--SAIVD-NEIIIAGGYNFN--NPSLNKVYKINIENKIH---VELPPMIKN 341 (557)
T ss_pred CEEEEeCCC--CeEEECCCCCcc-ccceE--EEEEC-CEEEEEcCCCCC--CCccceEEEEECCCCeE---eeCCCCcch
Confidence 578889887 666666654211 11112 22234 445555332111 11236789999988763 333321111
Q ss_pred eeccc-cCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCC-
Q 004735 246 YAFPR-MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG- 323 (732)
Q Consensus 246 ~~~p~-~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g- 323 (732)
-..+. -.-+| +|+.+....... ....+.++|.. +++......++..- ... ..-.-+|+||+.... .+
T Consensus 342 R~~~~~~~~~g-~IYviGG~~~~~--~~~sve~Ydp~-~~~W~~~~~mp~~r----~~~--~~~~~~g~IYviGG~-~~~ 410 (557)
T PHA02713 342 RCRFSLAVIDD-TIYAIGGQNGTN--VERTIECYTMG-DDKWKMLPDMPIAL----SSY--GMCVLDQYIYIIGGR-TEH 410 (557)
T ss_pred hhceeEEEECC-EEEEECCcCCCC--CCceEEEEECC-CCeEEECCCCCccc----ccc--cEEEECCEEEEEeCC-Ccc
Confidence 11111 22344 576665332111 13457888887 55443222121110 111 112346777766543 11
Q ss_pred --------------------eeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC----
Q 004735 324 --------------------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---- 379 (732)
Q Consensus 324 --------------------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g---- 379 (732)
...+.++|+.+.+.+.+.+........ ....+ ++.||+....++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-------~~~~~-----~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-------GVVSH-----KDDIYVVCDIKDEKNV 478 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-------cEEEE-----CCEEEEEeCCCCCCcc
Confidence 235888999998888776432111111 11222 345666653222
Q ss_pred EEEEEEEECCC-CceEEeccCCCceE--EeeEeCCEEEEEEeCCCCCcEEEEEEcCCCcce
Q 004735 380 RSYLGILDDFG-HSLSLLDIPFTDID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 437 (732)
Q Consensus 380 ~~~ly~~~~~~-~~~~~lt~~~~~v~--~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~~~ 437 (732)
...++++|+++ .+++.+..-..... .+..-+++++++++-. +...+..+|..+.+.+
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~-~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYE-SYMLQDTFNVYTYEWN 538 (557)
T ss_pred ceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeec-ceeehhhcCccccccc
Confidence 13578999998 78987765332222 2234466777766533 2334667777777653
No 434
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.69 E-value=1.9 Score=48.25 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=113.9
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEEeCCCCeEEEE
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~~~~~~~l~~~ 170 (732)
-++.++- .+.|||++... + .|-+.... |++++.++..+ +.+.-|-+..+....|+|.+.....|=+.
T Consensus 1028 VGidfDC~e~mvyWtDv~g----~-SI~rasL~-G~Ep~ti~n~~------L~SPEGiAVDh~~Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1028 VGIDFDCRERMVYWTDVAG----R-SISRASLE-GAEPETIVNSG------LISPEGIAVDHIRRNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred eeeecccccceEEEeecCC----C-cccccccc-CCCCceeeccc------CCCccceeeeeccceeeeeccccchhhee
Confidence 4666666 77899988733 2 23333333 34555555443 23333445667777899987666677777
Q ss_pred eCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc-CCCceecc
Q 004735 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS-GSDFYAFP 249 (732)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~-~~~~~~~p 249 (732)
.|++ ...+.|-..+ -+.-.....+|=+..|+|+-+++. +-.|-..++++.. .+.|.. +-..-++.
T Consensus 1096 ~LdG--~~rkvLf~td---LVNPR~iv~D~~rgnLYwtDWnRe------nPkIets~mDG~N---rRilin~DigLPNGL 1161 (1289)
T KOG1214|consen 1096 LLDG--SERKVLFYTD---LVNPRAIVVDPIRGNLYWTDWNRE------NPKIETSSMDGEN---RRILINTDIGLPNGL 1161 (1289)
T ss_pred ecCC--ceeeEEEeec---ccCcceEEeecccCceeecccccc------CCcceeeccCCcc---ceEEeecccCCCCCc
Confidence 7875 4444443321 222355667787777888876553 2467777888765 555543 33455677
Q ss_pred ccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEE
Q 004735 250 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 328 (732)
Q Consensus 250 ~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~ 328 (732)
.|.|..+.|.|+..- ..+|-....+ |.- +++++.+- .+ .+....+++ +||+-.+ ...|.
T Consensus 1162 tfdpfs~~LCWvDAG-------t~rleC~~p~--g~g-RR~i~~~L-----qY--PF~itsy~~~fY~TDWk---~n~vv 1221 (1289)
T KOG1214|consen 1162 TFDPFSKLLCWVDAG-------TKRLECTLPD--GTG-RRVIQNNL-----QY--PFSITSYADHFYHTDWK---RNGVV 1221 (1289)
T ss_pred eeCcccceeeEEecC-------CcceeEecCC--CCc-chhhhhcc-----cC--ceeeeeccccceeeccc---cCceE
Confidence 889999999988621 2334444433 322 23333333 22 233445666 6665333 23466
Q ss_pred EEeccCCeE
Q 004735 329 KWIESNNEV 337 (732)
Q Consensus 329 ~~d~~~g~~ 337 (732)
.++..+++.
T Consensus 1222 sv~~~~~~~ 1230 (1289)
T KOG1214|consen 1222 SVNKHSGQF 1230 (1289)
T ss_pred Eeecccccc
Confidence 666665543
No 435
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=92.62 E-value=5.4 Score=38.45 Aligned_cols=130 Identities=8% Similarity=-0.033 Sum_probs=72.3
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccC-CeEEEecccccccCCCc
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFSRPL 351 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~~~~ 351 (732)
..+.++|.. +|+..+. +.-. ..+.....++||+++.++.. + .+--+|+.+ +.++.. .....+.+..
T Consensus 165 ~tVRLWD~r-Tgt~v~s--L~~~-----s~VtSlEvs~dG~ilTia~g-s---sV~Fwdaksf~~lKs~-k~P~nV~SAS 231 (334)
T KOG0278|consen 165 KTVRLWDHR-TGTEVQS--LEFN-----SPVTSLEVSQDGRILTIAYG-S---SVKFWDAKSFGLLKSY-KMPCNVESAS 231 (334)
T ss_pred CceEEEEec-cCcEEEE--EecC-----CCCcceeeccCCCEEEEecC-c---eeEEeccccccceeec-cCcccccccc
Confidence 347788887 7765332 2222 34678899999997666654 2 244456554 222211 1222222322
Q ss_pred eeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEe--ccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEE
Q 004735 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 428 (732)
Q Consensus 352 w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~l--t~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 428 (732)
.. .++.+|+...++ ..+|.+|..+|+.... ......|..+ .++++.+ |..++.++...||.
T Consensus 232 L~-------------P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~-yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 232 LH-------------PKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL-YASGSEDGTIRLWQ 295 (334)
T ss_pred cc-------------CCCceEEecCcc--eEEEEEeccCCceeeecccCCCCceEEEEECCCCce-eeccCCCceEEEEE
Confidence 22 333555555444 4577778888876655 2335567777 4556555 44555666666777
Q ss_pred EEc
Q 004735 429 VTL 431 (732)
Q Consensus 429 ~dl 431 (732)
...
T Consensus 296 t~~ 298 (334)
T KOG0278|consen 296 TTP 298 (334)
T ss_pred ecC
Confidence 643
No 436
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=92.61 E-value=0.2 Score=51.59 Aligned_cols=67 Identities=19% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCEEEEEcC-CCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 515 LSIQYWTSRGWAFVDVNY-GGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 515 ~~~~~l~~~G~~v~~~d~-rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.....|.++|+.|+-+|- |-- |.+ ........|+...+++...+ ....++.++|+|+|+-+.-.+..
T Consensus 278 ~v~~~l~~~gvpVvGvdsLRYf------W~~----rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADvlP~~~n 345 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSLRYF------WSE----RTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADVLPFAYN 345 (456)
T ss_pred HHHHHHHHCCCceeeeehhhhh------hcc----CCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchhhHHHHH
Confidence 467889999999999994 210 111 11223367888888887765 24679999999999977655554
No 437
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=92.60 E-value=0.62 Score=51.10 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=80.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCccCCcccH---HHHHHHHCCCEEEEEcCCCCCCCC----hhhH--H
Q 004735 474 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTGYG----REFR--E 544 (732)
Q Consensus 474 ~i~~~~~~P~~~~~~~~~~~~~P~vl~~HGg~~~~~~~~~~~---~~~~l~~~G~~v~~~d~rG~~g~g----~~~~--~ 544 (732)
.|...+++|.+ +++ . ++.+-||+.. ....... ....-..+||+++.-|- |..+.. .++. .
T Consensus 16 ~i~fev~LP~~--WNg------R-~~~~GgGG~~-G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~ 84 (474)
T PF07519_consen 16 NIRFEVWLPDN--WNG------R-FLQVGGGGFA-GGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNP 84 (474)
T ss_pred eEEEEEECChh--hcc------C-eEEECCCeee-CcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCH
Confidence 67778888974 321 2 3333333222 1111111 13445688999999994 222211 1111 1
Q ss_pred hhccCCCcccHHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEeecCcCCHHHH
Q 004735 545 RLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 613 (732)
Q Consensus 545 ~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~p~~~~a~v~~~~~~d~~~~ 613 (732)
....+|+...+.+...+.+.|++. +...+++-...|.|.||--++..+. +|+.|.++++.+|..++..+
T Consensus 85 ~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~~ 155 (474)
T PF07519_consen 85 EALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTHL 155 (474)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHHH
Confidence 111234444455666666777665 5556889999999999999999999 99999999999998876543
No 438
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=1.8 Score=44.73 Aligned_cols=215 Identities=14% Similarity=0.129 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHCCCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 573 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 573 (732)
..|+|+++... +............+.+.||.++.+-.+-.. . ......+..-.......+..|.+....|+
T Consensus 38 ~k~Iv~~~gWa--g~~~r~l~ky~~~Yq~~g~~~~~~tap~~~---~----~~~~s~~~~sl~~~~~~l~~L~~~~~~~~ 108 (350)
T KOG2521|consen 38 EKPIVVLLGWA--GAIDRNLMKYSKIYQDKGYIVVRITAPCPS---V----FLSASRRILSLSLASTRLSELLSDYNSDP 108 (350)
T ss_pred cccEEEEeeec--cccchhHHHHHHHHhcCCceEEEecCcccc---c----ccccccccchhhHHHHHHHHHhhhccCCc
Confidence 34788777543 222234444666778889988877643111 0 01111122223445566667777666889
Q ss_pred CcEEEEEcChHHHHHHHHH---h--C-CC---cceEEEeec-C-----cCCHHHHHhhc--chhhhhhhhhh--------
Q 004735 574 KRLCITGGSAGGYTTLAAL---A--F-RD---TFKAGASLY-G-----VADLSMLRAET--HKFESRYIDNL-------- 628 (732)
Q Consensus 574 ~ri~i~G~S~GG~~a~~~~---~--~-p~---~~~a~v~~~-~-----~~d~~~~~~~~--~~~~~~~~~~~-------- 628 (732)
..+.+.-+|+||.+.+... . + |. ++.+.+..+ | +.+........ ......+....
T Consensus 109 ~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~ 188 (350)
T KOG2521|consen 109 CPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDYVARWARLNYHITLLTM 188 (350)
T ss_pred CceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhhHHHHHhcCeEEEEEEe
Confidence 9999999999997776554 1 2 22 222222221 1 11111100000 00000000000
Q ss_pred cCC---h---hhhhhcCcc----cc-----CCCC--CCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004735 629 VGS---E---KDYYEKSPI----NF-----VDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 691 (732)
Q Consensus 629 ~~~---~---~~~~~~sp~----~~-----~~~i--~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH 691 (732)
... . .......+. .+ -... ..+.+.+.+..|.++|..+.+++.+..+..|..++..-+.+.-|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H 268 (350)
T KOG2521|consen 189 AGNEGGAYLLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEH 268 (350)
T ss_pred eecccchhhhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccc
Confidence 000 0 000000000 00 1112 46778888999999999999999999999999999999999989
Q ss_pred cCCCcccHHHHHHHHHHHHHHHhCCC
Q 004735 692 GFRKAENIKFTLEQQMVFFARVVGHF 717 (732)
Q Consensus 692 ~~~~~~~~~~~~~~~~~fl~~~l~~~ 717 (732)
.-.-........+...+|++......
T Consensus 269 ~~h~r~~p~~y~~~~~~Fl~~~~~~~ 294 (350)
T KOG2521|consen 269 VAHFRSFPKTYLKKCSEFLRSVISSY 294 (350)
T ss_pred eeeeccCcHHHHHHHHHHHHhccccc
Confidence 65444566889999999999988643
No 439
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=92.52 E-value=12 Score=37.15 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=42.6
Q ss_pred cccCCCCCeEEEEeccCCCCCCCccEEEEEEecCC-Cce-eeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 249 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDV-YKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
...+.||+.||.+. + +.|-+-....+ +.+ .+..+..+..|+| ..++||||+.++..++. .|.
T Consensus 3 ~~~~~~Gk~lAi~q-d--------~~iEiRsa~Ddf~si~~kcqVpkD~~PQW----Rkl~WSpD~tlLa~a~S-~G~-- 66 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-D--------QCIEIRSAKDDFSSIIGKCQVPKDPNPQW----RKLAWSPDCTLLAYAES-TGT-- 66 (282)
T ss_pred eeecCCCcEEEEEe-c--------cEEEEEeccCCchheeEEEecCCCCCchh----eEEEECCCCcEEEEEcC-CCe--
Confidence 45689999999887 1 12322222211 122 2223333333333 47899999994444444 454
Q ss_pred EEEEeccCCeEEEecc
Q 004735 327 LHKWIESNNEVLAIYS 342 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~ 342 (732)
|..+|+.+.+...|.+
T Consensus 67 i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 67 IRVFDLMGSELFVIPP 82 (282)
T ss_pred EEEEecccceeEEcCc
Confidence 5556777766665543
No 440
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.50 E-value=4.9 Score=39.93 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=86.9
Q ss_pred eeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 193 ~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
.++..|+|...- +....++ ..|-++|...-.....-.+..+...+....|.|.|..|+.- .+++-
T Consensus 175 vn~l~FHPre~I-LiS~srD--------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-TdHp~----- 239 (430)
T KOG0640|consen 175 VNDLDFHPRETI-LISGSRD--------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-TDHPT----- 239 (430)
T ss_pred ccceeecchhhe-EEeccCC--------CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-cCCCc-----
Confidence 467789998774 4433322 45666676532200011122334455667899999988654 35543
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCc
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPL 351 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~ 351 (732)
+.++|++ +-.. -+-...+.+..+.+..+..|+.|+||.+... .|...|| |--++ |.+... +...+.
T Consensus 240 --~rlYdv~-T~Qc---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Iklw--DGVS~--rCv~t~~~AH~gs-- 306 (430)
T KOG0640|consen 240 --LRLYDVN-TYQC---FVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKLW--DGVSN--RCVRTIGNAHGGS-- 306 (430)
T ss_pred --eeEEecc-ceeE---eeecCcccccccceeEEEecCCccEEEEecc-CCcEEee--ccccH--HHHHHHHhhcCCc--
Confidence 7888887 3211 1111111122256778899999999888776 6765554 43333 222211 111111
Q ss_pred eeecccceeeeeecCCCCEEEEEEEECCEEEEEEEE
Q 004735 352 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 387 (732)
Q Consensus 352 w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~ 387 (732)
......|. +++.+++++..+....||.+.
T Consensus 307 ---evcSa~Ft----kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 307 ---EVCSAVFT----KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ---eeeeEEEc----cCCeEEeecCCcceeeeeeec
Confidence 12223444 566677777777777777654
No 441
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=92.26 E-value=14 Score=37.38 Aligned_cols=144 Identities=17% Similarity=0.073 Sum_probs=81.7
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCC----CceecCCCCCCCCeEeeceeecCCCCEEEEEEe----cc-CCCCCCc
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDS----SPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE----DR-RQDALNS 219 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~----~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~----~~-~~~~~~~ 219 (732)
..++.++.++|++..-+-|-.++..-. - +|.-++.-......+.+..+. -||+- .||.. +. .++-+..
T Consensus 107 dia~~~~~l~fVNT~fSCLatl~~~~S-F~P~WkPpFIs~la~eDRCHLNGlA~-~~g~p-~yVTa~~~sD~~~gWR~~~ 183 (335)
T TIGR03032 107 DLALGAGRLLFVNTLFSCLATVSPDYS-FVPLWKPPFISKLAPEDRCHLNGMAL-DDGEP-RYVTALSQSDVADGWREGR 183 (335)
T ss_pred heeecCCcEEEEECcceeEEEECCCCc-cccccCCccccccCccCceeecceee-eCCeE-EEEEEeeccCCcccccccc
Confidence 344455577777766666666665320 1 222233211112467777765 46653 44432 11 1121122
Q ss_pred eeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~ 299 (732)
...=.++|+.+++ .+.+|-.+--+|+|- ||+ |.+..+ ...+++.+|.+ +|+...+..+++
T Consensus 184 ~~gG~vidv~s~e-----vl~~GLsmPhSPRWh-dgr-Lwvlds-------gtGev~~vD~~-~G~~e~Va~vpG----- 243 (335)
T TIGR03032 184 RDGGCVIDIPSGE-----VVASGLSMPHSPRWY-QGK-LWLLNS-------GRGELGYVDPQ-AGKFQPVAFLPG----- 243 (335)
T ss_pred cCCeEEEEeCCCC-----EEEcCccCCcCCcEe-CCe-EEEEEC-------CCCEEEEEcCC-CCcEEEEEECCC-----
Confidence 3444568988876 566777777789996 555 766652 35669999987 787755544444
Q ss_pred cccCcCceeCCCCcEEEEEe
Q 004735 300 VESPTEPKWSSKGELFFVTD 319 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~ 319 (732)
......|. |+++|++-
T Consensus 244 --~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 244 --FTRGLAFA--GDFAFVGL 259 (335)
T ss_pred --CCccccee--CCEEEEEe
Confidence 34677887 77655543
No 442
>KOG4328 consensus WD40 protein [Function unknown]
Probab=92.26 E-value=13 Score=39.09 Aligned_cols=161 Identities=9% Similarity=0.021 Sum_probs=82.3
Q ss_pred EeeceeecCCCC-EEEEEEeccCCCCCCceeEEEEEEcCCCC--ccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 192 SYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIALNGQN--IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 192 ~~~~~~~spdG~-~l~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
+.....|+|--. .++.+.+.. .+|-++|+.+.+ ...+...+.....+....|||-..--.|.+.-
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~--------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy---- 255 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKG--------GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY---- 255 (498)
T ss_pred ceEEEEecccCcceEEEEccCC--------CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc----
Confidence 456677999655 666665433 577777885322 00011223333456677889944433344311
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccccccc
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF 347 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~ 347 (732)
.+.|..+|++ ++....+..+.... ..+....++.+.. ++|..+. |..+++-....+.+...+.-.+.-+
T Consensus 256 ---DGtiR~~D~~-~~i~e~v~s~~~d~----~~fs~~d~~~e~~~vl~~~~~--G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 256 ---DGTIRLQDFE-GNISEEVLSLDTDN----IWFSSLDFSAESRSVLFGDNV--GNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ---Cceeeeeeec-chhhHHHhhcCccc----eeeeeccccCCCccEEEeecc--cceEEEEeecCCccchhhhhhhccc
Confidence 2348889998 55432222222222 4566777888777 7776665 4445543333333333333111122
Q ss_pred CCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEE
Q 004735 348 SRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 386 (732)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~ 386 (732)
......| -..+++.++.-++...||-+
T Consensus 326 ~sv~~NP------------~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 326 TSVALNP------------VCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred ceeecCC------------CCchheeecccCcceeeeeh
Confidence 2221111 23345566666666667744
No 443
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=92.18 E-value=0.46 Score=42.49 Aligned_cols=52 Identities=21% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh----CC----CcceEEEeecCcC
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR----DTFKAGASLYGVA 608 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~p----~~~~a~v~~~~~~ 608 (732)
.+.+...++.+.+++. ..+|.+.|||+||.+|..++. +. ..+++....+|..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3456666666666654 479999999999999987765 22 4566666666644
No 444
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=92.03 E-value=3.3 Score=41.51 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=31.2
Q ss_pred CEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEe
Q 004735 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (732)
Q Consensus 155 ~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~ 210 (732)
+.++......|.|+++|+.++ .-...+-.. +...++..+.|+.-+++....
T Consensus 105 ~p~la~~G~~GvIrVid~~~~-~~~~~~~gh----G~sINeik~~p~~~qlvls~S 155 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG-QCSKNYRGH----GGSINEIKFHPDRPQLVLSAS 155 (385)
T ss_pred CeeEEeecceeEEEEEecchh-hhccceecc----CccchhhhcCCCCCcEEEEec
Confidence 445555556678999999762 222333332 556788889998755554433
No 445
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=92.00 E-value=0.41 Score=48.53 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhc-CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEeec-CcCCHHHHHhhcc---------hhhhh
Q 004735 555 VNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLRAETH---------KFESR 623 (732)
Q Consensus 555 ~~D~~~~i~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~~p~~~~a~v~~~-~~~d~~~~~~~~~---------~~~~~ 623 (732)
+.-+..|.+...++ ..+.-++..+.|.|--|..++..+....++.++|... -+.+......... .+...
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~py 293 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPY 293 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchh
Confidence 33344444444332 2345678999999999999988887555566666542 2233222111100 01111
Q ss_pred h---hhhhcCCh---hhhhhcCccccC-----CCCCCCEEEEEeCCCCccChHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004735 624 Y---IDNLVGSE---KDYYEKSPINFV-----DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 692 (732)
Q Consensus 624 ~---~~~~~~~~---~~~~~~sp~~~~-----~~i~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 692 (732)
| +.+.++.+ +...-.+|+.+. .++..|-.|+.+..|...+++.+.-+++.|.. ...+.+.|+..|.
T Consensus 294 yaegi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG---~kaLrmvPN~~H~ 370 (507)
T COG4287 294 YAEGIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPG---EKALRMVPNDPHN 370 (507)
T ss_pred HhhhHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCC---ceeeeeCCCCcch
Confidence 1 11111222 233445666554 56789999999999999999999999998875 4578999999997
Q ss_pred CCCcccHHHHHHHHHHHHHHHhC
Q 004735 693 FRKAENIKFTLEQQMVFFARVVG 715 (732)
Q Consensus 693 ~~~~~~~~~~~~~~~~fl~~~l~ 715 (732)
... ....+.+..|+.++..
T Consensus 371 ~~n----~~i~esl~~flnrfq~ 389 (507)
T COG4287 371 LIN----QFIKESLEPFLNRFQM 389 (507)
T ss_pred hhH----HHHHHHHHHHHHHHhc
Confidence 532 2233445555555443
No 446
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=91.65 E-value=2.5 Score=42.23 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=61.6
Q ss_pred eeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCC-ccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 196 ~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
-+|++|+..++....++ ++.+....+.. ......|......+....|+|-+.+|+-.+-++.
T Consensus 16 hAwn~drt~iAv~~~~~---------evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-------- 78 (361)
T KOG1523|consen 16 HAWNSDRTQIAVSPNNH---------EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-------- 78 (361)
T ss_pred eeecCCCceEEeccCCc---------eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--------
Confidence 46999999977665533 44444444333 2223445555566778999999999987664442
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEE
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 315 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~ 315 (732)
-|+.....+|+.++..++-... +....+.|+|.+..+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKF 115 (361)
T ss_pred ccccccCCCCeeccceeEEEec----cceeeEeecCcCceE
Confidence 3555542267665554444444 556789999998733
No 447
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.64 E-value=2.4 Score=43.73 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=63.3
Q ss_pred EEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccc
Q 004735 222 EIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 301 (732)
Q Consensus 222 ~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~ 301 (732)
.|-.+|..+.. .++-....+.+.....|+||..|.-.+ ++ ..|-++|+. +-++. ..+....-..-.
T Consensus 323 kvRfwD~Rs~~---~~~sv~~gg~vtSl~ls~~g~~lLsss-RD-------dtl~viDlR-t~eI~--~~~sA~g~k~as 388 (459)
T KOG0288|consen 323 KVRFWDIRSAD---KTRSVPLGGRVTSLDLSMDGLELLSSS-RD-------DTLKVIDLR-TKEIR--QTFSAEGFKCAS 388 (459)
T ss_pred ceEEEeccCCc---eeeEeecCcceeeEeeccCCeEEeeec-CC-------Cceeeeecc-cccEE--EEeecccccccc
Confidence 57777877665 444444445677788999999986543 22 227788877 44442 222221100002
Q ss_pred cCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc
Q 004735 302 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (732)
Q Consensus 302 ~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 343 (732)
......|||||+++.... -...||+++..+|+...+...
T Consensus 389 DwtrvvfSpd~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGS---ADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ccceeEECCCCceeeecc---CCCcEEEEEccCceEEEEecc
Confidence 346788999998433322 234588888899998877644
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.60 E-value=15 Score=39.79 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=49.7
Q ss_pred EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCC----CCeEeeceeecCCC-----CEEEEEEeccCCCCC--CceeEEE
Q 004735 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE----PLVSYADGIFDPRF-----NRYVTVREDRRQDAL--NSTTEIV 224 (732)
Q Consensus 156 ~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~----~~~~~~~~~~spdG-----~~l~~~~~~~~~~~~--~~~~~l~ 224 (732)
+++++....++|++++..+ +..+.+...+.. ...-..+++++||- +..+|+......... .....|.
T Consensus 42 ~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~ 119 (454)
T TIGR03606 42 QLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIV 119 (454)
T ss_pred eEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEE
Confidence 5655553358899998764 433322211100 01223566788763 223444321111100 0136787
Q ss_pred EEEcCC--CCccccEEcccCC-----CceeccccCCCCCeEEEEeccC
Q 004735 225 AIALNG--QNIQEPKVLVSGS-----DFYAFPRMDPRGERMAWIEWHH 265 (732)
Q Consensus 225 ~~d~~~--~~~~~~~~lt~~~-----~~~~~p~~SPDG~~la~~~~~~ 265 (732)
++.++. ......+.|..+. -+-....|.|||+ |++...+.
T Consensus 120 R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 120 RYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred EEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 777652 2211123332211 1223567999996 76654443
No 449
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=91.43 E-value=0.42 Score=49.42 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHHHCCCEEEEEcCCCCC---CCChh-hHHhhccCC--CcccHHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHH
Q 004735 518 QYWTSRGWAFVDVNYGGST---GYGRE-FRERLLGRW--GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 591 (732)
Q Consensus 518 ~~l~~~G~~v~~~d~rG~~---g~g~~-~~~~~~~~~--~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 591 (732)
....+.+-.++-+..|-.| .+|.. +....+-.+ -+....|....+.+|++........|+.+|.|+||+++.+.
T Consensus 105 D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWf 184 (492)
T KOG2183|consen 105 DLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWF 184 (492)
T ss_pred hhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHH
Confidence 3334557778888876322 23333 211111111 12237888889999988866677899999999999999998
Q ss_pred Hh-CCCcceEEEeec
Q 004735 592 LA-FRDTFKAGASLY 605 (732)
Q Consensus 592 ~~-~p~~~~a~v~~~ 605 (732)
=. +|..+.++.+.+
T Consensus 185 RlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 185 RLKYPHIVLGALAAS 199 (492)
T ss_pred HhcChhhhhhhhhcc
Confidence 76 998877766544
No 450
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=91.37 E-value=2.5 Score=43.07 Aligned_cols=144 Identities=8% Similarity=0.039 Sum_probs=78.9
Q ss_pred eEEEEEEcCCCCcc-ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCc
Q 004735 221 TEIVAIALNGQNIQ-EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 299 (732)
Q Consensus 221 ~~l~~~d~~~~~~~-~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~ 299 (732)
..||+....+|.+. ..+.++.....+-...|||..+.+++...- ...|.+.|+. .|.-+........+
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~-------DgsIrIWDiR-s~~~~~~~~~kAh~--- 302 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC-------DGSIRIWDIR-SGPKKAAVSTKAHN--- 302 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------CceEEEEEec-CCCccceeEeeccC---
Confidence 56777766665422 123445545566678999988887655422 2348888987 55322223333333
Q ss_pred cccCcCceeCCCCcEEEEEeccCCeeeEEEEe-ccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEE
Q 004735 300 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWI-ESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 377 (732)
Q Consensus 300 ~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d-~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~ 377 (732)
..+.-+.|+.+-.++....+ .|.+.||-+. ...++.. ........++...|.| ....++..+..
T Consensus 303 -sDVNVISWnr~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p------------~e~s~iaasg~ 368 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGD-DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP------------HEDSVIAASGE 368 (440)
T ss_pred -CceeeEEccCCcceeeecCC-CceEEEEEhhhccCCCcceeEEeccCCeeEEEecc------------ccCceEEeccC
Confidence 45667889876554544444 6777776332 2223211 1222333444555665 34445555555
Q ss_pred CCEEEEEEEECC
Q 004735 378 NGRSYLGILDDF 389 (732)
Q Consensus 378 ~g~~~ly~~~~~ 389 (732)
+.+-.||-+.++
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 666667766544
No 451
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=91.20 E-value=12 Score=38.41 Aligned_cols=138 Identities=10% Similarity=0.045 Sum_probs=79.6
Q ss_pred eEEEEeCCCCC--CCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cC
Q 004735 166 RLYKHSIDSKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SG 242 (732)
Q Consensus 166 ~l~~~d~~~~~--~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~ 242 (732)
.|+++...++. -..++++.. ...+-+.+|||.-+-+++.+.-+ ..|-++|+..+.. +...++ ..
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~-~~~~~~kAh 301 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPK-KAAVSTKAH 301 (440)
T ss_pred ceEeeeeccCceeecCcccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCc-cceeEeecc
Confidence 56666665410 013344433 45567899999888888887644 4677778776631 023333 22
Q ss_pred CCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--CCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEe
Q 004735 243 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTD 319 (732)
Q Consensus 243 ~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~ 319 (732)
..-++-..|+-+-..||+-. +...+.++|+.. .|+ .+..+.... ..+..+.|+|... ++..+.
T Consensus 302 ~sDVNVISWnr~~~lLasG~--------DdGt~~iwDLR~~~~~~--pVA~fk~Hk----~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGG--------DDGTLSIWDLRQFKSGQ--PVATFKYHK----APITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCceeeEEccCCcceeeecC--------CCceEEEEEhhhccCCC--cceeEEecc----CCeeEEEeccccCceEEecc
Confidence 23456678887776555433 345588888861 232 244454444 5678899999755 444443
Q ss_pred ccCCeeeEEEEe
Q 004735 320 RKNGFWNLHKWI 331 (732)
Q Consensus 320 ~~~g~~~l~~~d 331 (732)
. ..+..||-+.
T Consensus 368 ~-D~QitiWDls 378 (440)
T KOG0302|consen 368 E-DNQITIWDLS 378 (440)
T ss_pred C-CCcEEEEEee
Confidence 3 4555565443
No 452
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=91.17 E-value=3.2 Score=42.94 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=77.7
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEECCEEEEE------
Q 004735 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS------ 160 (732)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~i~f~------ 160 (732)
..+|-++++.. ++.+|.-+ +-.-|+..++++| .++.+++...+..-.+.. ...... .+.++|+
T Consensus 114 CGRPLGl~f~~~ggdL~VaD------AYlGL~~V~p~g~-~a~~l~~~~~G~~~kf~N--~ldI~~-~g~vyFTDSSsk~ 183 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVAD------AYLGLLKVGPEGG-LAELLADEAEGKPFKFLN--DLDIDP-EGVVYFTDSSSKY 183 (376)
T ss_pred cCCcceEEeccCCCeEEEEe------cceeeEEECCCCC-cceeccccccCeeeeecC--ceeEcC-CCeEEEecccccc
Confidence 36778999998 77777755 2334666666533 555555443222211110 001111 2223333
Q ss_pred -----------eCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcC
Q 004735 161 -----------NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (732)
Q Consensus 161 -----------~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~ 229 (732)
...+|+|+.+|..+ ...+.|..+ -...+..+.|||++++++..... .+|.++=+.
T Consensus 184 ~~rd~~~a~l~g~~~GRl~~YD~~t--K~~~VLld~----L~F~NGlaLS~d~sfvl~~Et~~--------~ri~rywi~ 249 (376)
T KOG1520|consen 184 DRRDFVFAALEGDPTGRLFRYDPST--KVTKVLLDG----LYFPNGLALSPDGSFVLVAETTT--------ARIKRYWIK 249 (376)
T ss_pred chhheEEeeecCCCccceEEecCcc--cchhhhhhc----ccccccccCCCCCCEEEEEeecc--------ceeeeeEec
Confidence 23457899999987 777777765 22336788999999987764422 344444444
Q ss_pred CCCccccEEccc-CCCceeccccCCCCC
Q 004735 230 GQNIQEPKVLVS-GSDFYAFPRMDPRGE 256 (732)
Q Consensus 230 ~~~~~~~~~lt~-~~~~~~~p~~SPDG~ 256 (732)
+.+.......++ -+++--+.+-+++|.
T Consensus 250 g~k~gt~EvFa~~LPG~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 250 GPKAGTSEVFAEGLPGYPDNIRRDSTGH 277 (376)
T ss_pred CCccCchhhHhhcCCCCCcceeECCCCC
Confidence 433000233333 234434456667775
No 453
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=90.91 E-value=20 Score=40.69 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=37.3
Q ss_pred EEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccc
Q 004735 274 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL 343 (732)
Q Consensus 274 ~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 343 (732)
+|-++-++ |+.+++...++- .....+.-.+=+. |||+-.. +..-.|-+.+.++.+.|.+...
T Consensus 1091 ~IevA~Ld--G~~rkvLf~tdL-----VNPR~iv~D~~rgnLYwtDWn-RenPkIets~mDG~NrRilin~ 1153 (1289)
T KOG1214|consen 1091 KIEVALLD--GSERKVLFYTDL-----VNPRAIVVDPIRGNLYWTDWN-RENPKIETSSMDGENRRILINT 1153 (1289)
T ss_pred hhheeecC--CceeeEEEeecc-----cCcceEEeecccCceeecccc-ccCCcceeeccCCccceEEeec
Confidence 45666664 655444333332 3444566666666 8886544 6667788888887776666644
No 454
>PHA03098 kelch-like protein; Provisional
Probab=90.86 E-value=18 Score=40.81 Aligned_cols=215 Identities=11% Similarity=-0.036 Sum_probs=101.5
Q ss_pred ECCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 153 ~~~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
.++.|++..... .++|.+|+.+ ..-..++.-+. .+.......-+| +|+.+...... .....++++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~~~~~~---~R~~~~~~~~~~-~lyv~GG~~~~---~~~~~v~~y 363 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKVPELIY---PRKNPGVTVFNN-RIYVIGGIYNS---ISLNTVESW 363 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeECCCCCc---ccccceEEEECC-EEEEEeCCCCC---EecceEEEE
Confidence 355555543321 2689999987 66666654321 121111222344 45555432211 124678888
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|+.+++++....+.... .......-+| +|+.......+.. ....++++|+. +++......++.. .. ...
T Consensus 364 d~~~~~W~~~~~lp~~r--~~~~~~~~~~-~iYv~GG~~~~~~-~~~~v~~yd~~-t~~W~~~~~~p~~-----r~-~~~ 432 (534)
T PHA03098 364 KPGESKWREEPPLIFPR--YNPCVVNVNN-LIYVIGGISKNDE-LLKTVECFSLN-TNKWSKGSPLPIS-----HY-GGC 432 (534)
T ss_pred cCCCCceeeCCCcCcCC--ccceEEEECC-EEEEECCcCCCCc-ccceEEEEeCC-CCeeeecCCCCcc-----cc-Cce
Confidence 98887642222222111 1111122244 4655442211110 13568899987 5554322211111 11 112
Q ss_pred eeCCCCcEEEEEeccC-----CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECC--
Q 004735 307 KWSSKGELFFVTDRKN-----GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-- 379 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~-----g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g-- 379 (732)
...-+++||+...... ....++++|+.+++.+.+.... .+.+.. ..... + +.||+.....+
T Consensus 433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----~~r~~~---~~~~~----~-~~iyv~GG~~~~~ 500 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN----FPRINA---SLCIF----N-NKIYVVGGDKYEY 500 (534)
T ss_pred EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC----cccccc---eEEEE----C-CEEEEEcCCcCCc
Confidence 2334566665543211 1234899999999888775321 111110 11111 3 34554432221
Q ss_pred -EEEEEEEECCCCceEEeccC
Q 004735 380 -RSYLGILDDFGHSLSLLDIP 399 (732)
Q Consensus 380 -~~~ly~~~~~~~~~~~lt~~ 399 (732)
...++.+|+++.+++.+...
T Consensus 501 ~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 501 YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred ccceeEEEeCCCCEEEecCCC
Confidence 34688889988888877653
No 455
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=2.1 Score=49.73 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=93.1
Q ss_pred CceeEEECC--EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 147 GGAFRIFGD--TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 147 ~~~~~~~~~--~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.+++|... .|+.+...++...++|+... .....++... ...+.....|+||+..-+.+..+.... ..|-
T Consensus 164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~--~~~~~S~l~WhP~~aTql~~As~dd~~-----Pviq 235 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTP--GRMHCSVLAWHPDHATQLLVASGDDSA-----PVIQ 235 (1049)
T ss_pred ceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCC--CccceeeeeeCCCCceeeeeecCCCCC-----ceeE
Confidence 445555433 56666666678889999851 2223333332 135678899999885444554433222 3555
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCc
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 304 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~ 304 (732)
.+|+.--. .+.+.++....-+....|++.+.+++..+.. ..++++.+.+ +|++ +-.++... ....
T Consensus 236 lWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgk-------D~~ii~wN~~-tgEv--l~~~p~~~----nW~f 300 (1049)
T KOG0307|consen 236 LWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGK-------DNRIICWNPN-TGEV--LGELPAQG----NWCF 300 (1049)
T ss_pred eecccccC-CchhhhcccccceeeeccCCCCchhhhcccC-------CCCeeEecCC-CceE--eeecCCCC----ccee
Confidence 56654321 1134444444445678999988777666522 3458888888 7876 44444433 4467
Q ss_pred CceeCCCCc-EEEEEeccCCeeeEEEE
Q 004735 305 EPKWSSKGE-LFFVTDRKNGFWNLHKW 330 (732)
Q Consensus 305 ~~~wspDg~-l~~~~~~~~g~~~l~~~ 330 (732)
.+.|.|..- ++-.+.- .|...||-+
T Consensus 301 dv~w~pr~P~~~A~asf-dgkI~I~sl 326 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASF-DGKISIYSL 326 (1049)
T ss_pred eeeecCCCcchhhhhee-ccceeeeee
Confidence 889998654 4444444 577677644
No 456
>PHA02713 hypothetical protein; Provisional
Probab=90.82 E-value=29 Score=39.30 Aligned_cols=217 Identities=9% Similarity=0.008 Sum_probs=106.0
Q ss_pred EEECCEEEEEeCCC------CeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEE
Q 004735 151 RIFGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (732)
Q Consensus 151 ~~~~~~i~f~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~ 224 (732)
+.-++.|++..+.+ ..++.+|+.+ ..-..+.+-+ ..+.......-+| +|+.+....+.. ....+.
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~~~m~---~~R~~~~~~~~~g-~IYviGG~~~~~---~~~sve 370 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVELPPMI---KNRCRFSLAVIDD-TIYAIGGQNGTN---VERTIE 370 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeCCCCc---chhhceeEEEECC-EEEEECCcCCCC---CCceEE
Confidence 33456666654322 3689999886 5555555431 1111111223345 455554432111 135688
Q ss_pred EEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCC----------------CccEEEEEEecCCCceee
Q 004735 225 AIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW----------------DKAELWVGYISENGDVYK 288 (732)
Q Consensus 225 ~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~----------------~~~~l~v~d~~~~g~~~~ 288 (732)
++|+.+.+++....+........ ...-+| +|+.+........+ ....+.++|.. +.+...
T Consensus 371 ~Ydp~~~~W~~~~~mp~~r~~~~--~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~-td~W~~ 446 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIALSSYG--MCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV-NNIWET 446 (557)
T ss_pred EEECCCCeEEECCCCCccccccc--EEEECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCC-CCeEee
Confidence 88998876422222221111111 112244 46655532211000 12457888877 554432
Q ss_pred eEEecCCCCCccccCcCceeCCCCcEEEEEeccC--Ce-eeEEEEeccC-CeEEEecccccccCCCceeecccceeeeee
Q 004735 289 RVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN--GF-WNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQS 364 (732)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~--g~-~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~ 364 (732)
+..+... .. ....-.-+|+||+...... +. ..+.++|+.+ .+.+.+.+....... .....
T Consensus 447 v~~m~~~-----r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-------~~~~~--- 510 (557)
T PHA02713 447 LPNFWTG-----TI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-------LHTIL--- 510 (557)
T ss_pred cCCCCcc-----cc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-------ceeEE---
Confidence 2211111 11 1112334667777654311 11 2467899998 788877643211111 11222
Q ss_pred cCCCCEEEEEEEECCEEEEEEEECCCCceEEecc
Q 004735 365 HGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 398 (732)
Q Consensus 365 ~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~ 398 (732)
-++.||+....++...+..+|+.+.+++.+..
T Consensus 511 --~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 511 --HDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred --ECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 24567777666666667788888888877654
No 457
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=90.76 E-value=16 Score=36.24 Aligned_cols=194 Identities=8% Similarity=-0.055 Sum_probs=96.4
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCcccccccccCCceeEEE--CCEEEEEeCCCCe
Q 004735 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKDQR 166 (732)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~l~~~~~~~~~~~~~~g~~~~~~~--~~~i~f~~~~~~~ 166 (732)
..+.|.| ...+|= +.-...+...+||+...+.+ +. .-++. +.+..-+.--..+|.|- +-.++-+..-+..
T Consensus 100 tK~~wiPd~~g~~p-dlLATs~D~LRlWri~~ee~-~~~~~~~L~---~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYP-DLLATSSDFLRLWRIGDEES-RVELQSVLN---NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred cceEecCCccccCc-chhhcccCeEEEEeccCcCC-ceehhhhhc---cCcccccCCcccccccccCCcceeEeecccCe
Confidence 4677777 332222 22222345557788765421 11 11111 11111111123445543 2234444445555
Q ss_pred EEEEeCCCCCCC----ceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-c
Q 004735 167 LYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-S 241 (732)
Q Consensus 167 l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~ 241 (732)
--++|+.+ +. .+||-.. +-...|.+|+-+|..+++....+ ..+-++|+...+ -..+. +
T Consensus 175 CTiWdie~--~~~~~vkTQLIAH----DKEV~DIaf~~~s~~~FASvgaD--------GSvRmFDLR~le---HSTIIYE 237 (364)
T KOG0290|consen 175 CTIWDIET--GVSGTVKTQLIAH----DKEVYDIAFLKGSRDVFASVGAD--------GSVRMFDLRSLE---HSTIIYE 237 (364)
T ss_pred EEEEEEee--ccccceeeEEEec----CcceeEEEeccCccceEEEecCC--------CcEEEEEecccc---cceEEec
Confidence 55667765 31 2344433 34568899999998876665533 356666776644 22222 2
Q ss_pred CCC---ceeccccCC-CCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEE
Q 004735 242 GSD---FYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 316 (732)
Q Consensus 242 ~~~---~~~~p~~SP-DG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~ 316 (732)
++. .....+|++ |=+++|-.. .+..++.+.|+.--+.. +..+.+.. ..+..++|.|-.+ -+.
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~-------~dS~~V~iLDiR~P~tp--va~L~~H~----a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFA-------MDSNKVVILDIRVPCTP--VARLRNHQ----ASVNGIAWAPHSSSHIC 304 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhh-------cCCceEEEEEecCCCcc--eehhhcCc----ccccceEecCCCCceee
Confidence 221 111123333 222232221 14567888888722222 44455554 7889999999877 665
Q ss_pred EEec
Q 004735 317 VTDR 320 (732)
Q Consensus 317 ~~~~ 320 (732)
++.+
T Consensus 305 taGD 308 (364)
T KOG0290|consen 305 TAGD 308 (364)
T ss_pred ecCC
Confidence 5544
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.71 E-value=12 Score=40.74 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=24.2
Q ss_pred CCHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEE
Q 004735 79 LTADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLV 118 (732)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~ 118 (732)
++++.+...-..+.++.|.|+++++.++.. .|+..++
T Consensus 20 f~~~~va~GL~~Pw~maflPDG~llVtER~---~G~I~~v 56 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDNQLWVTERA---TGKILRV 56 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCCeEEEEEec---CCEEEEE
Confidence 455556555567889999996678887752 2554433
No 459
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=90.57 E-value=5.8 Score=42.41 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=34.8
Q ss_pred ceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEE
Q 004735 245 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 318 (732)
Q Consensus 245 ~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~ 318 (732)
-...-+|||||.-|.-.. + .+.|-++.- +|-++ ..+.... ..+..++|.|++. ++|..
T Consensus 106 A~~~gRW~~dGtgLlt~G--E------DG~iKiWSr--sGMLR--Stl~Q~~----~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAG--E------DGVIKIWSR--SGMLR--STVVQNE----ESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred hhhhcccCCCCceeeeec--C------CceEEEEec--cchHH--HHHhhcC----ceeEEEEECCCCCceEEec
Confidence 344569999999886543 2 223444432 46542 2223332 5677889999988 77654
No 460
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=90.52 E-value=5.4 Score=39.65 Aligned_cols=158 Identities=12% Similarity=0.039 Sum_probs=77.1
Q ss_pred CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 244 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 244 ~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
+-++...|.|-..-|+-.+ + ...|-++|+.....-+..+.+.+. ..+..+.+-|.|. |+.-++.
T Consensus 173 devn~l~FHPre~ILiS~s--r------D~tvKlFDfsK~saKrA~K~~qd~-----~~vrsiSfHPsGefllvgTdH-- 237 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGS--R------DNTVKLFDFSKTSAKRAFKVFQDT-----EPVRSISFHPSGEFLLVGTDH-- 237 (430)
T ss_pred CcccceeecchhheEEecc--C------CCeEEEEecccHHHHHHHHHhhcc-----ceeeeEeecCCCceEEEecCC--
Confidence 3455667888766444322 2 234777887622111112333333 3456778999999 5544433
Q ss_pred CeeeEEEEeccCCeEEEec-ccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEec---c
Q 004735 323 GFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD---I 398 (732)
Q Consensus 323 g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt---~ 398 (732)
. .+.++|..+-+.-.-. +.+. -......+... ..+.+|++...+|.-.|| | |-.-+.++ .
T Consensus 238 p--~~rlYdv~T~QcfvsanPd~q------ht~ai~~V~Ys----~t~~lYvTaSkDG~Iklw--D--GVS~rCv~t~~~ 301 (430)
T KOG0640|consen 238 P--TLRLYDVNTYQCFVSANPDDQ------HTGAITQVRYS----STGSLYVTASKDGAIKLW--D--GVSNRCVRTIGN 301 (430)
T ss_pred C--ceeEEeccceeEeeecCcccc------cccceeEEEec----CCccEEEEeccCCcEEee--c--cccHHHHHHHHh
Confidence 3 3444555553322111 1110 01112223333 567799999999988887 3 22223333 2
Q ss_pred C--CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 399 P--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 399 ~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
. ...|.+. ...+++ ++..++.+..-.||. +.++.
T Consensus 302 AH~gsevcSa~Ftkn~k-yiLsSG~DS~vkLWE--i~t~R 338 (430)
T KOG0640|consen 302 AHGGSEVCSAVFTKNGK-YILSSGKDSTVKLWE--ISTGR 338 (430)
T ss_pred hcCCceeeeEEEccCCe-EEeecCCcceeeeee--ecCCc
Confidence 1 2234444 334444 444555554444444 44554
No 461
>PF03283 PAE: Pectinacetylesterase
Probab=90.45 E-value=0.22 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHH
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 592 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~ 592 (732)
.-+.+++++|..++.-++++|.|.|.|+||+-++.-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 4477899999998777789999999999999887654
No 462
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.40 E-value=17 Score=34.87 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=78.0
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
+.+-..+..++++|+.+| ...|++... ....+..+|..+.. +++...-+ ..+-.+|-.+.... +.
T Consensus 74 f~s~GgDk~v~vwDV~TG-kv~Rr~rgH----~aqVNtV~fNeesS-Vv~SgsfD--------~s~r~wDCRS~s~e-Pi 138 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTG-KVDRRFRGH----LAQVNTVRFNEESS-VVASGSFD--------SSVRLWDCRSRSFE-PI 138 (307)
T ss_pred cccCCCCceEEEEEcccC-eeeeecccc----cceeeEEEecCcce-EEEecccc--------ceeEEEEcccCCCC-cc
Confidence 334445668999999984 445666654 45667777877766 44443322 45666677664422 33
Q ss_pred Ecc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EE
Q 004735 238 VLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 315 (732)
Q Consensus 238 ~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~ 315 (732)
|+. +..+.+.....+ +.-|+--+ ....+..+|+. .|... . .... ..+....+|+||+ .+
T Consensus 139 Qildea~D~V~Si~v~--~heIvaGS--------~DGtvRtydiR-~G~l~--s--Dy~g----~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVA--EHEIVAGS--------VDGTVRTYDIR-KGTLS--S--DYFG----HPITSVSFSKDGNCSL 199 (307)
T ss_pred chhhhhcCceeEEEec--ccEEEeec--------cCCcEEEEEee-cceee--h--hhcC----CcceeEEecCCCCEEE
Confidence 443 222223322222 22232222 12347777877 56431 1 1111 3466788999999 44
Q ss_pred EEEeccCCeeeEEEEeccCCeEEE
Q 004735 316 FVTDRKNGFWNLHKWIESNNEVLA 339 (732)
Q Consensus 316 ~~~~~~~g~~~l~~~d~~~g~~~~ 339 (732)
..+-. ..|.++|-++|+.-.
T Consensus 200 a~~l~----stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 200 ASSLD----STLRLLDKETGKLLK 219 (307)
T ss_pred Eeecc----ceeeecccchhHHHH
Confidence 44333 346678888887543
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.35 E-value=20 Score=37.44 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=44.6
Q ss_pred ccCcCceeCCCCc-EEEEEecc---CC---------eeeEEEEeccC-Ce-EEEec-ccccccCCCceeecccceeeeee
Q 004735 301 ESPTEPKWSSKGE-LFFVTDRK---NG---------FWNLHKWIESN-NE-VLAIY-SLDAEFSRPLWVFGINSYEIIQS 364 (732)
Q Consensus 301 ~~~~~~~wspDg~-l~~~~~~~---~g---------~~~l~~~d~~~-g~-~~~l~-~~~~~~~~~~w~~~~~~~~~~~~ 364 (732)
.+...++++|||+ |+...... .+ ..+|+.+|+.+ ++ ..+.. +.+.. ....-..+..++.++
T Consensus 147 ~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~-~~~~~~~~isd~~al-- 223 (326)
T PF13449_consen 147 RGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPP-PTAPGDNGISDIAAL-- 223 (326)
T ss_pred CCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCcc-ccccCCCCceeEEEE--
Confidence 5677899999999 77665432 11 15688888876 31 22221 11100 000012234566676
Q ss_pred cCCCCEEEEEEEE-----CCEEEEEEEECCC
Q 004735 365 HGEKNLIACSYRQ-----NGRSYLGILDDFG 390 (732)
Q Consensus 365 ~~~~~~l~~~s~~-----~g~~~ly~~~~~~ 390 (732)
+++.|++.-.. ....+||.+++..
T Consensus 224 --~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 224 --PDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred --CCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 44444444332 2356788888654
No 464
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.30 E-value=18 Score=36.01 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=64.6
Q ss_pred CeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCC
Q 004735 190 LVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 268 (732)
Q Consensus 190 ~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~ 268 (732)
.....+.+||| ....+++.+++. .-++|-+..+ |... ++....-.+.....+||-||.++ |+..-
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~-------tVR~wevq~~-g~~~-~ka~~~~~~PvL~v~WsddgskV-f~g~~---- 92 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDG-------TVRIWEVQNS-GQLV-PKAQQSHDGPVLDVCWSDDGSKV-FSGGC---- 92 (347)
T ss_pred ccchheeEeccccCceEEecccCC-------ceEEEEEecC-Cccc-chhhhccCCCeEEEEEccCCceE-Eeecc----
Confidence 45667889999 444444566543 3566766554 2210 22222333344556899999866 45422
Q ss_pred CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccC
Q 004735 269 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESN 334 (732)
Q Consensus 269 ~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~ 334 (732)
..++-++|+. +|.+.. +...+ ..+....|-+... ++.+... ...|--+|...
T Consensus 93 ---Dk~~k~wDL~-S~Q~~~---v~~Hd----~pvkt~~wv~~~~~~cl~TGSW---DKTlKfWD~R~ 146 (347)
T KOG0647|consen 93 ---DKQAKLWDLA-SGQVSQ---VAAHD----APVKTCHWVPGMNYQCLVTGSW---DKTLKFWDTRS 146 (347)
T ss_pred ---CCceEEEEcc-CCCeee---eeecc----cceeEEEEecCCCcceeEeccc---ccceeecccCC
Confidence 2347888998 776532 33333 4556777866543 4443322 23455566544
No 465
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=90.16 E-value=0.38 Score=52.76 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=52.0
Q ss_pred CCCEEEEEeCCCCccChHHHHHHHHHHHhCC-C-------CEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHH
Q 004735 648 SCPIILFQGLEDKVVPPDQARKIYKALKENG-L-------PVALVEYEGEQHGFRKA-ENIKFTLEQQMVFFAR 712 (732)
Q Consensus 648 ~~P~Lii~G~~D~~v~~~~~~~~~~~l~~~g-~-------~~~~~~~~~~gH~~~~~-~~~~~~~~~~~~fl~~ 712 (732)
--++|+.||..|..+++....++++++.+.- . -++|...||.+|....+ ...-+.+..+.+|.++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 3689999999999999999999999987752 1 25899999999976443 3334778888888874
No 466
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=90.13 E-value=0.74 Score=42.01 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
..+...++....+ ....+|.+.|||+||.+|..++.
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~ 47 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGL 47 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHH
Confidence 3344444444433 23579999999999999988876
No 467
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.87 E-value=12 Score=37.43 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=84.1
Q ss_pred eEEEEEEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCC--------------CCCCccEEEEEEecCCCce
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPN--------------MPWDKAELWVGYISENGDV 286 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~--------------~~~~~~~l~v~d~~~~g~~ 286 (732)
..||...+-+.. + +++.+.++...|+-| .|+|-.|-+.- +-+.-+.|+.+|++ ++++
T Consensus 20 ~~iY~felvG~~---P---~SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e-~~~V 90 (339)
T PF09910_consen 20 EKIYRFELVGPP---P---TSGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTE-NDSV 90 (339)
T ss_pred eEEEEeeeccCC---C---CCCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcC-CCeE
Confidence 567776665433 2 234444555555532 35555543321 11234678999988 6765
Q ss_pred eeeE--EecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeee
Q 004735 287 YKRV--CVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQ 363 (732)
Q Consensus 287 ~~~~--~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~ 363 (732)
+-+- -... ...|.+-++++-..|=.. |++...++.-+--||.+|..+|+.+.|.....--. ..+
T Consensus 91 rLLWkesih~-~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG----------~~~-- 157 (339)
T PF09910_consen 91 RLLWKESIHD-KTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKG----------TLV-- 157 (339)
T ss_pred EEEEecccCC-ccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCc----------eEe--
Confidence 3211 1112 226777888888888666 77776652334457889999999999985431111 011
Q ss_pred ecCCCCEEEEEEE--ECCEEEEEEEECCCCce
Q 004735 364 SHGEKNLIACSYR--QNGRSYLGILDDFGHSL 393 (732)
Q Consensus 364 ~~~~~~~l~~~s~--~~g~~~ly~~~~~~~~~ 393 (732)
. +..+|... ..|...|..+|+.++++
T Consensus 158 ---~-D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 158 ---H-DYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ---e-eeEEEeccccccCCceEEEEEccCCeE
Confidence 1 12333331 23556788889988887
No 468
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=89.84 E-value=3.5 Score=41.17 Aligned_cols=112 Identities=15% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCceeEEE--CCEEEEEeCCCCeEEEEeCCCCCCCc---eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCce
Q 004735 146 GGGAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (732)
Q Consensus 146 g~~~~~~~--~~~i~f~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~ 220 (732)
|..++.+. ...|+|.....|+|-++|+.. .+. ..+... .....-.+.+-+|..|+-.+...
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG-------- 203 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG-------- 203 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------
Confidence 34444443 236888887889999999975 333 333322 23345567889999865544422
Q ss_pred eEEEEEEcCCCCccccEEcccCC--CceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec
Q 004735 221 TEIVAIALNGQNIQEPKVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 281 (732)
Q Consensus 221 ~~l~~~d~~~~~~~~~~~lt~~~--~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~ 281 (732)
.=|-++|..+|+. ...+-.|. ......+||||+++||..+ +...|+++.+.
T Consensus 204 TLIRIFdt~~g~~--l~E~RRG~d~A~iy~iaFSp~~s~LavsS--------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 204 TLIRIFDTEDGTL--LQELRRGVDRADIYCIAFSPNSSWLAVSS--------DKGTLHIFSLR 256 (346)
T ss_pred EEEEEEEcCCCcE--eeeeecCCchheEEEEEeCCCccEEEEEc--------CCCeEEEEEee
Confidence 4455668877761 23333333 2345689999999999877 45669999887
No 469
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=89.78 E-value=23 Score=35.25 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=61.1
Q ss_pred ccccCCcee--EEECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCC--CEEEEEEeccCCCCC
Q 004735 142 AQEYGGGAF--RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDAL 217 (732)
Q Consensus 142 ~~~~g~~~~--~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~~~~ 217 (732)
.|.|++... .+-+..++.+...+..|-++|..+- .+....+-. +.-| .-+|||-. .-|+++..+.
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl-Q~a~~F~me----~~VY-shamSp~a~sHcLiA~gtr~----- 167 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL-QEAVDFKME----GKVY-SHAMSPMAMSHCLIAAGTRD----- 167 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccc-eeeEEeecC----ceee-hhhcChhhhcceEEEEecCC-----
Confidence 456666543 3345566666666777888998761 222222221 2222 33578843 3444544433
Q ss_pred CceeEEEEEEcCCCCccccEE-cccCCCceeccccCCCCCeEEEEec
Q 004735 218 NSTTEIVAIALNGQNIQEPKV-LVSGSDFYAFPRMDPRGERMAWIEW 263 (732)
Q Consensus 218 ~~~~~l~~~d~~~~~~~~~~~-lt~~~~~~~~p~~SPDG~~la~~~~ 263 (732)
.++-+-|+++|. -.- |....+.+....|||...++.+...
T Consensus 168 ---~~VrLCDi~SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 168 ---VQVRLCDIASGS---FSHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred ---CcEEEEeccCCc---ceeeeccccCceEEEEeccCceeEEEecC
Confidence 456666999887 443 4444455667899999999988763
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.64 E-value=20 Score=34.49 Aligned_cols=138 Identities=13% Similarity=0.168 Sum_probs=66.1
Q ss_pred eccccCCCCCeEEEEe-ccCCCC--CCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccC
Q 004735 247 AFPRMDPRGERMAWIE-WHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 322 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~-~~~~~~--~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~ 322 (732)
+.-..+||||+ |.. +.+.+. ..-...||+.-+ ++++ .++-+.- .-...+.|+.|-+ +||+ +.
T Consensus 112 NDgkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~--~h~v---~~i~~~v----~IsNgl~Wd~d~K~fY~i-Ds-- 177 (310)
T KOG4499|consen 112 NDGKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLA--GHQV---ELIWNCV----GISNGLAWDSDAKKFYYI-DS-- 177 (310)
T ss_pred ccCccCCCCce--eeeeeccccccccccccEEEEecc--CCCc---eeeehhc----cCCccccccccCcEEEEE-cc--
Confidence 34567999997 332 222221 112455776543 3443 2222221 3345789999988 5554 33
Q ss_pred CeeeE--EEEeccCCeE---EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEe
Q 004735 323 GFWNL--HKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLL 396 (732)
Q Consensus 323 g~~~l--~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~l 396 (732)
-...+ |-+|..+|.. +.|...+.. .|.=++....+..- ..+.||++.. +| ..++.+|+.+|++ ..+
T Consensus 178 ln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~e~~~PDGm~ID----~eG~L~Va~~-ng-~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPFESLEPDGMTID----TEGNLYVATF-NG-GTVQKVDPTTGKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCcceeEEeccC--CCcCCCCCCcceEc----cCCcEEEEEe-cC-cEEEEECCCCCcEEEEE
Confidence 33455 6666777742 333322110 11001111112221 2233444433 22 4688889988874 344
Q ss_pred ccCCCceEEe
Q 004735 397 DIPFTDIDNI 406 (732)
Q Consensus 397 t~~~~~v~~~ 406 (732)
..+...++.+
T Consensus 250 klPt~qitsc 259 (310)
T KOG4499|consen 250 KLPTPQITSC 259 (310)
T ss_pred EcCCCceEEE
Confidence 4454455555
No 471
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.59 E-value=16 Score=39.61 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
+....||||++++++..-.+ +|-++|++.-. ..-=- -+.+.+...-.|-|=.+++|+..++.-
T Consensus 55 t~ik~s~DGqY~lAtG~YKP--------~ikvydlanLS---LKFERhlDae~V~feiLsDD~SK~v~L~~DR~I----- 118 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKP--------QIKVYDLANLS---LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTI----- 118 (703)
T ss_pred ceeEecCCCcEEEEecccCC--------ceEEEEcccce---eeeeecccccceeEEEeccchhhheEeecCcee-----
Q ss_pred cEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEecccccccCCCce
Q 004735 273 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 352 (732)
Q Consensus 273 ~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 352 (732)
++..-+.......++... .....-.|+.| ||+.... ..||+++++.|..-.-..-. ....|
T Consensus 119 ------efHak~G~hy~~RIP~~G----RDm~y~~~scD--ly~~gsg----~evYRlNLEqGrfL~P~~~~---~~~lN 179 (703)
T KOG2321|consen 119 ------EFHAKYGRHYRTRIPKFG----RDMKYHKPSCD--LYLVGSG----SEVYRLNLEQGRFLNPFETD---SGELN 179 (703)
T ss_pred ------eehhhcCeeeeeecCcCC----ccccccCCCcc--EEEeecC----cceEEEEccccccccccccc---cccce
Q ss_pred eecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCc------------eEEe-eEeCCEEEEEEeC
Q 004735 353 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD------------IDNI-TLGNDCLFVEGAS 419 (732)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~------------v~~~-~~~~~~~~~~~~~ 419 (732)
+.+.+ .-+.|+.....+|....| |+.++...-.-.-... |+.+ ..+++--+.++++
T Consensus 180 ~v~in---------~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 180 VVSIN---------EEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred eeeec---------CccceEEecccCceEEEe--cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Q ss_pred CCCCcEEEEEEcCCCcc
Q 004735 420 GVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 420 ~~~~~~ly~~dl~~~~~ 436 (732)
.. .+|.+||.+.++
T Consensus 249 ~G---~v~iyDLRa~~p 262 (703)
T KOG2321|consen 249 TG---SVLIYDLRASKP 262 (703)
T ss_pred CC---cEEEEEcccCCc
No 472
>PLN02633 palmitoyl protein thioesterase family protein
Probab=89.46 E-value=1.9 Score=43.54 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+.|+ |+.||.+...+........+.+.+. |.-+.++.. |.+ .-.+|.. ..-+.+..+.+.+.+....
T Consensus 25 ~~P~-ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-~~~s~~~--------~~~~Qve~vce~l~~~~~l- 92 (314)
T PLN02633 25 SVPF-IMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-VGDSWLM--------PLTQQAEIACEKVKQMKEL- 92 (314)
T ss_pred CCCe-EEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-cccccee--------CHHHHHHHHHHHHhhchhh-
Confidence 4454 5579976666555666667767554 777766665 221 1111111 1123333444444443222
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeecC
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYG 606 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~~ 606 (732)
.+-+-++|+|.||.++=.++. .|+ .++-.|.+++
T Consensus 93 ~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 346999999999999988877 554 4777776553
No 473
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=89.27 E-value=11 Score=41.22 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=75.0
Q ss_pred eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecC-CCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcc----
Q 004735 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLV---- 240 (732)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt---- 240 (732)
+|.++...+ ++.+.|..--- ....-+..||- +..+ +++.+..-..+....-+-.+++...++ .+++.
T Consensus 185 Nl~L~~~~~--~klEvL~yirT--E~dPl~~~Fs~~~~~q-i~tVE~s~s~~g~~~~d~ciYE~~r~k---lqrvsvtsi 256 (545)
T PF11768_consen 185 NLHLLSCSG--GKLEVLSYIRT--ENDPLDVEFSLNQPYQ-IHTVEQSISVKGEPSADSCIYECSRNK---LQRVSVTSI 256 (545)
T ss_pred cEEEEEecC--CcEEEEEEEEe--cCCcEEEEccCCCCcE-EEEEEEecCCCCCceeEEEEEEeecCc---eeEEEEEEE
Confidence 577777765 55555543100 00113345666 4444 444443211111123344445555555 44332
Q ss_pred cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEec
Q 004735 241 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 320 (732)
Q Consensus 241 ~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~ 320 (732)
.-.......++||+.++++.-- ..+.|.++|.. .+.. ...... .-+..++|.|||.++++.+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC--------~DgSiiLyD~~-~~~t----~~~ka~----~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGC--------EDGSIILYDTT-RGVT----LLAKAE----FIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred ecCCcceEEecCcccceEEEEe--------cCCeEEEEEcC-CCee----eeeeec----ccceEEEEcCCCcEEEEEcC
Confidence 1123344568999999998765 23448899976 4432 222222 34567899999997777766
Q ss_pred cCCeeeEEEEec
Q 004735 321 KNGFWNLHKWIE 332 (732)
Q Consensus 321 ~~g~~~l~~~d~ 332 (732)
+|.-++|=+.+
T Consensus 320 -qGelQ~FD~AL 330 (545)
T PF11768_consen 320 -QGELQCFDMAL 330 (545)
T ss_pred -CceEEEEEeec
Confidence 67666554333
No 474
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=89.23 E-value=5.3 Score=41.20 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=56.0
Q ss_pred ccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEec------CCC-----c--eeeeEEecCCCCCccccCcCc
Q 004735 240 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS------ENG-----D--VYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 240 t~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~------~~g-----~--~~~~~~~~~~~~~~~~~~~~~ 306 (732)
+.....++..+|||+|..||-.. + ..+++++-.. .+. + ....+.+.+.. ..+...
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~-D-------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~----~diydL 129 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGG-D-------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR----DDIYDL 129 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecC-C-------CceEEEEEecCcCCccccchhhhCccceEEEEEecccc----cchhhh
Confidence 33444566788999999776433 2 2223322211 011 1 11223344333 456789
Q ss_pred eeCCCCc-EEEEEeccCCeeeEEEEeccCCeEEEeccc-ccccCCCceeecc
Q 004735 307 KWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGI 356 (732)
Q Consensus 307 ~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~ 356 (732)
+|+||+. +.+.+-+ ..++.+|+..|+...+..+ ........|.+..
T Consensus 130 ~Ws~d~~~l~s~s~d----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVD----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN 177 (434)
T ss_pred hccCCCceeeeeecc----ceEEEEEeccceeEeeccccccccceeecchhh
Confidence 9999998 5544333 4567788888887776633 3344556677643
No 475
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.13 E-value=38 Score=37.93 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=30.8
Q ss_pred EEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 382 YLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 382 ~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
.||+++....++..-.....++.+++..++.++++..+. .|+.+.+.+
T Consensus 307 Giyv~d~~~~~v~l~se~~~DI~dVs~~~neiFvL~~d~----~l~~~sv~s 354 (726)
T KOG3621|consen 307 GIYVFDSNNSQVYLWSEGGHDILDVSHCGNEIFVLNLDR----GLKVESVAS 354 (726)
T ss_pred eEEEEEeccceEEEeecCCCceeEEeecCceEEEEecCC----ceeEEEeeh
Confidence 499999877666555556677777777777777666533 344444443
No 476
>KOG4328 consensus WD40 protein [Function unknown]
Probab=89.08 E-value=33 Score=36.24 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=78.1
Q ss_pred eeEEECCEEEEEeCCCCeEEEEeCCCCCCCcee-cCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEE
Q 004735 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (732)
Q Consensus 149 ~~~~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (732)
.|++.+..-+++...+|.|-..|+++ ...+. ++... ....+.+..++.+..-++|... ...+-++|
T Consensus 241 ~F~P~n~s~i~ssSyDGtiR~~D~~~--~i~e~v~s~~~--d~~~fs~~d~~~e~~~vl~~~~---------~G~f~~iD 307 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYDGTIRLQDFEG--NISEEVLSLDT--DNIWFSSLDFSAESRSVLFGDN---------VGNFNVID 307 (498)
T ss_pred EecCCChhheeeeccCceeeeeeecc--hhhHHHhhcCc--cceeeeeccccCCCccEEEeec---------ccceEEEE
Confidence 35555555566666788888999986 43333 33221 1345566678877776666533 13455566
Q ss_pred cCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC-CCceee-eEEecCCCCCccccCcC
Q 004735 228 LNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYK-RVCVAGFDPTIVESPTE 305 (732)
Q Consensus 228 ~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~-~g~~~~-~~~~~~~~~~~~~~~~~ 305 (732)
+.++..+ ...+.-....+....+.|--.++.-+...+ ..+.++|+.. .++... +..+... ..+..
T Consensus 308 ~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~~laT~s~D-------~T~kIWD~R~l~~K~sp~lst~~Hr-----rsV~s 374 (498)
T KOG4328|consen 308 LRTDGSE-YENLRLHKKKITSVALNPVCPWFLATASLD-------QTAKIWDLRQLRGKASPFLSTLPHR-----RSVNS 374 (498)
T ss_pred eecCCcc-chhhhhhhcccceeecCCCCchheeecccC-------cceeeeehhhhcCCCCcceeccccc-----ceeee
Confidence 6554310 223332233566677788666654443222 2245667652 122211 1122222 67888
Q ss_pred ceeCCCCc-EEEEEec
Q 004735 306 PKWSSKGE-LFFVTDR 320 (732)
Q Consensus 306 ~~wspDg~-l~~~~~~ 320 (732)
..|||+|- |+.+..+
T Consensus 375 AyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 375 AYFSPSGGTLLTTCQD 390 (498)
T ss_pred eEEcCCCCceEeeccC
Confidence 99999977 6655443
No 477
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=89.05 E-value=9.3 Score=39.46 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=77.6
Q ss_pred ccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeee
Q 004735 248 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWN 326 (732)
Q Consensus 248 ~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~ 326 (732)
.+..||+|+.||... .. .+.+++++..+.+ .+-+...... .......+..+..-..+.+..++-.+
T Consensus 67 ~~~~s~~~~llAv~~-~~-------K~~~~f~~~~~~~~~kl~~~~~v~-----~~~~ai~~~~~~~sv~v~dkagD~~~ 133 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVAT-SS-------KQRAVFDYRENPKGAKLLDVSCVP-----KRPTAISFIREDTSVLVADKAGDVYS 133 (390)
T ss_pred ccccCCCceEEEEEe-CC-------CceEEEEEecCCCcceeeeEeecc-----cCcceeeeeeccceEEEEeecCCcee
Confidence 456677877665443 22 2356666652222 1111211111 12234444445442223333233445
Q ss_pred EEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCC-CceEE
Q 004735 327 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF-TDIDN 405 (732)
Q Consensus 327 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~-~~v~~ 405 (732)
+..+....+..+.+...-.-..+..|++ |+ .++.+++++..-++-.++ +.-.....-.+. .-|..
T Consensus 134 ~di~s~~~~~~~~~lGhvSml~dVavS~------------D~-~~IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 134 FDILSADSGRCEPILGHVSMLLDVAVSP------------DD-QFIITADRDEKIRVSRYP-ATFVIESFCLGHKEFVST 199 (390)
T ss_pred eeeecccccCcchhhhhhhhhheeeecC------------CC-CEEEEecCCceEEEEecC-cccchhhhccccHhheee
Confidence 5555555466665553332333444543 44 677788888877766664 222233222222 22555
Q ss_pred eeEeCCEEEEEEeCCCCCcEEEEEEcCCCc
Q 004735 406 ITLGNDCLFVEGASGVEPSSVAKVTLDDHK 435 (732)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~ly~~dl~~~~ 435 (732)
+..-+++.++.+++. ..|+++|..+|+
T Consensus 200 isl~~~~~LlS~sGD---~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 200 ISLTDNYLLLSGSGD---KTLRLWDITSGK 226 (390)
T ss_pred eeeccCceeeecCCC---CcEEEEecccCC
Confidence 544445555444433 478888888876
No 478
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=88.92 E-value=5.7 Score=40.12 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=66.8
Q ss_pred CCCCcCCHHHHhccCCccCceEEcCCCcEEE-EeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccccc-CCceeE
Q 004735 74 SWKSPLTADVVSGASKRLGGTAVDGHGRLIW-LESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEY-GGGAFR 151 (732)
Q Consensus 74 ~~~~~~~~~~i~~~~~~~~~~~~~pg~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~-g~~~~~ 151 (732)
.|+.|.-.+..-.+.+.+.+++.. ++...| +.....+.. .-||-....||-...+... +..+.+. -.-+--
T Consensus 137 ~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~--~gWR~~~~~gG~vidv~s~----evl~~GLsmPhSPR 209 (335)
T TIGR03032 137 LWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVA--DGWREGRRDGGCVIDIPSG----EVVASGLSMPHSPR 209 (335)
T ss_pred ccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCc--ccccccccCCeEEEEeCCC----CEEEcCccCCcCCc
Confidence 577775555555556778888887 444444 333222111 2366554444322222111 1111000 011122
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEe
Q 004735 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (732)
Q Consensus 152 ~~~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~ 210 (732)
|-+++++|.+...+.|+.+|.++ |+.+.+..-++. .....|. |+.++..+.
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~--G~~e~Va~vpG~----~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQA--GKFQPVAFLPGF----TRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCC--CcEEEEEECCCC----Cccccee--CCEEEEEec
Confidence 45778999999999999999987 777777765332 2555676 887554443
No 479
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.79 E-value=14 Score=36.61 Aligned_cols=159 Identities=10% Similarity=-0.039 Sum_probs=0.0
Q ss_pred eEE-ECCEEEEEeCCCC--eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEE
Q 004735 150 FRI-FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (732)
Q Consensus 150 ~~~-~~~~i~f~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (732)
+.. .++.++-+....+ .|..+|+++ ++..+-..- +.++..=-...-+.+|+-..+.. ...+++
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l----~~~~FgEGit~~~d~l~qLTWk~--------~~~f~y 115 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLET--GKVLQSVPL----PPRYFGEGITILGDKLYQLTWKE--------GTGFVY 115 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-----TTT--EEEEEEETTEEEEEESSS--------SEEEEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCC--CcEEEEEEC----CccccceeEEEECCEEEEEEecC--------CeEEEE
Q ss_pred EcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCc
Q 004735 227 ALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 227 d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
|.++-+ ...-..-...--+.+ .||+.|+... ...+|+..|.+ +-+......+.... .....+..+
T Consensus 116 d~~tl~---~~~~~~y~~EGWGLt--~dg~~Li~SD--------GS~~L~~~dP~-~f~~~~~i~V~~~g-~pv~~LNEL 180 (264)
T PF05096_consen 116 DPNTLK---KIGTFPYPGEGWGLT--SDGKRLIMSD--------GSSRLYFLDPE-TFKEVRTIQVTDNG-RPVSNLNEL 180 (264)
T ss_dssp ETTTTE---EEEEEE-SSS--EEE--ECSSCEEEE---------SSSEEEEE-TT-T-SEEEEEE-EETT-EE---EEEE
T ss_pred ccccce---EEEEEecCCcceEEE--cCCCEEEEEC--------CccceEEECCc-ccceEEEEEEEECC-EECCCcEeE
Q ss_pred eeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEec
Q 004735 307 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 341 (732)
Q Consensus 307 ~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 341 (732)
.|- ||.||..-.. ...|.++|+++|++..+.
T Consensus 181 E~i-~G~IyANVW~---td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 181 EYI-NGKIYANVWQ---TDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEE-TTEEEEEETT---SSEEEEEETTT-BEEEEE
T ss_pred EEE-cCEEEEEeCC---CCeEEEEeCCCCeEEEEE
No 480
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=88.74 E-value=5.7 Score=44.17 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=67.8
Q ss_pred cccCCCCCeEEEEeccCCC------------CCCCccEEEEEEecCCC----ceeeeE--EecCC------------CCC
Q 004735 249 PRMDPRGERMAWIEWHHPN------------MPWDKAELWVGYISENG----DVYKRV--CVAGF------------DPT 298 (732)
Q Consensus 249 p~~SPDG~~la~~~~~~~~------------~~~~~~~l~v~d~~~~g----~~~~~~--~~~~~------------~~~ 298 (732)
..++|+...|++...+... ..+...+||.++.+ .+ ....+. ++.+. +..
T Consensus 355 i~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~-~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~ 433 (524)
T PF05787_consen 355 ITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD-GNDHAATTFTWELFLVGGDPTDASGNGSNKCDDN 433 (524)
T ss_pred eeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc-CCccccceeEEEEEEEecCcccccccccCcccCC
Confidence 3567877788877654441 12345688888876 33 111111 22221 113
Q ss_pred ccccCcCceeCCCCcEEEEEeccCCeee--------------------EEEEeccCCeEEEec--ccccccCCCceeecc
Q 004735 299 IVESPTEPKWSSKGELFFVTDRKNGFWN--------------------LHKWIESNNEVLAIY--SLDAEFSRPLWVFGI 356 (732)
Q Consensus 299 ~~~~~~~~~wspDg~l~~~~~~~~g~~~--------------------l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~ 356 (732)
+..++..+.++++|+|++..+......+ ++..++..++.+++. +...++.++.|++
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp-- 511 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP-- 511 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC--
Confidence 3356678889999997777765222111 334456677777766 4566788888886
Q ss_pred cceeeeeecCCCCEEEEEEE
Q 004735 357 NSYEIIQSHGEKNLIACSYR 376 (732)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~s~ 376 (732)
|++.|++...
T Consensus 512 ----------Dg~tlFvniQ 521 (524)
T PF05787_consen 512 ----------DGRTLFVNIQ 521 (524)
T ss_pred ----------CCCEEEEEEe
Confidence 7777776543
No 481
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=88.61 E-value=38 Score=36.25 Aligned_cols=166 Identities=9% Similarity=0.033 Sum_probs=89.0
Q ss_pred ecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCCC-ceeccccCCCCCeEEEEeccCCCCCCCccEEE
Q 004735 198 FDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 276 (732)
Q Consensus 198 ~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~-~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~ 276 (732)
+.-...+|+.++. -.+|.+..+.++.. .+.++.+.+ .+...++||--+.|.-+..+ ++.+.
T Consensus 129 YN~~DeyiAsvs~---------gGdiiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd-------~G~Vt 190 (673)
T KOG4378|consen 129 YNNTDEYIASVSD---------GGDIIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASD-------KGAVT 190 (673)
T ss_pred ecCCcceeEEecc---------CCcEEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeecc-------CCeEE
Confidence 4445566666654 25788888887652 344554433 34467899998888766533 34488
Q ss_pred EEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe-EEEecccccccCCCceee
Q 004735 277 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVF 354 (732)
Q Consensus 277 v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~ 354 (732)
++|+. +-.. ......... .-...++++|-.. |++.-.. ...|+.+|....+ ...|+.+ .|
T Consensus 191 lwDv~-g~sp-~~~~~~~Hs----AP~~gicfspsne~l~vsVG~---Dkki~~yD~~s~~s~~~l~y~-----~P---- 252 (673)
T KOG4378|consen 191 LWDVQ-GMSP-IFHASEAHS----APCRGICFSPSNEALLVSVGY---DKKINIYDIRSQASTDRLTYS-----HP---- 252 (673)
T ss_pred EEecc-CCCc-ccchhhhcc----CCcCcceecCCccceEEEecc---cceEEEeecccccccceeeec-----CC----
Confidence 88886 2211 011111111 2345789999877 4443322 3568888876533 2234321 11
Q ss_pred cccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc--eEEeccCCCceEEe
Q 004735 355 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSLLDIPFTDIDNI 406 (732)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~--~~~lt~~~~~v~~~ 406 (732)
...+.|. +.+.++...... ..||.||+.+.+ +..+...+..|..+
T Consensus 253 -lstvaf~----~~G~~L~aG~s~--G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 253 -LSTVAFS----ECGTYLCAGNSK--GELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred -cceeeec----CCceEEEeecCC--ceEEEEecccCCCCceEeeecccceeEE
Confidence 2234555 455555444433 467777876543 23333334445444
No 482
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.57 E-value=47 Score=37.28 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=45.5
Q ss_pred ceeecCCCCEEEEEEeccC-------CCCCCceeEEEEEEcCCCCccccEEcccCCCc----eeccc---cCCCCC--eE
Q 004735 195 DGIFDPRFNRYVTVREDRR-------QDALNSTTEIVAIALNGQNIQEPKVLVSGSDF----YAFPR---MDPRGE--RM 258 (732)
Q Consensus 195 ~~~~spdG~~l~~~~~~~~-------~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~~~----~~~p~---~SPDG~--~l 258 (732)
.++++|+-..|++-..+.. ..++.+...|+.+|+++|+....-|.+..... ...|. +--||+ .+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 3467777776555443311 11223367899999999983222344433321 12332 225777 34
Q ss_pred EEEeccCCCCCCCccEEEEEEecCCCce
Q 004735 259 AWIEWHHPNMPWDKAELWVGYISENGDV 286 (732)
Q Consensus 259 a~~~~~~~~~~~~~~~l~v~d~~~~g~~ 286 (732)
+... .. ...+|++|.. +|++
T Consensus 318 v~~~-~K------~G~~~vlDr~-tG~~ 337 (527)
T TIGR03075 318 LAHA-DR------NGFFYVLDRT-NGKL 337 (527)
T ss_pred EEEe-CC------CceEEEEECC-CCce
Confidence 3332 22 3458999987 7875
No 483
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.32 E-value=3 Score=46.16 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=69.4
Q ss_pred eecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEccc--CCCceeccccCCCCCeEEEEeccCCCCCCCccE
Q 004735 197 IFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 274 (732)
Q Consensus 197 ~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~--~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~ 274 (732)
.++..++++++-.. ..-||+.+..++. .+.+.. .......-..|++...+|+.. ....
T Consensus 40 c~dst~~~l~~GsS---------~G~lyl~~R~~~~---~~~~~~~~~~~~~~~~~vs~~e~lvAagt--------~~g~ 99 (726)
T KOG3621|consen 40 CVDATEEYLAMGSS---------AGSVYLYNRHTGE---MRKLKNEGATGITCVRSVSSVEYLVAAGT--------ASGR 99 (726)
T ss_pred EeecCCceEEEecc---------cceEEEEecCchh---hhcccccCccceEEEEEecchhHhhhhhc--------CCce
Confidence 45666777666544 3689999988887 555554 233344456788877666554 3455
Q ss_pred EEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCeeeEEEEec
Q 004735 275 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 332 (732)
Q Consensus 275 l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~~l~~~d~ 332 (732)
+.++-+. .+.......++..+..-...+.-..||+||.-+|..+. +|.-.+.++|.
T Consensus 100 V~v~ql~-~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s 155 (726)
T KOG3621|consen 100 VSVFQLN-KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-QGKVVLTELDS 155 (726)
T ss_pred EEeehhh-ccCCCcceeeccccccCCceEEEEEecccccEEeecCC-CceEEEEEech
Confidence 6666665 33222233333332100145677899999996667777 78777777665
No 484
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.18 E-value=25 Score=38.29 Aligned_cols=143 Identities=8% Similarity=0.040 Sum_probs=79.1
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCc-eecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccc
Q 004735 157 VIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQE 235 (732)
Q Consensus 157 i~f~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 235 (732)
++......+.++++++.+ ++. ..++.+. .........++.+- .++|..... ..+..++...+.
T Consensus 72 ~lvlgt~~g~v~~ys~~~--g~it~~~st~~--h~~~v~~~~~~~~~-~ciyS~~ad--------~~v~~~~~~~~~--- 135 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAG--GEITAKLSTDK--HYGNVNEILDAQRL-GCIYSVGAD--------LKVVYILEKEKV--- 135 (541)
T ss_pred EEEeecCCccEEEEEecC--CeEEEEEecCC--CCCcceeeeccccc-CceEecCCc--------eeEEEEecccce---
Confidence 333444456899999987 443 3444321 11122222233332 345554432 567777777666
Q ss_pred cEEcc-cCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCC--C
Q 004735 236 PKVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--G 312 (732)
Q Consensus 236 ~~~lt-~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--g 312 (732)
..++. .....+...+.||||+.|+-.+ .+|-++|++ ++++ +..+++.. .-+....+.-+ |
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as----------~~ik~~~~~-~kev--v~~ftgh~----s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS----------RQIKVLDIE-TKEV--VITFTGHG----SPVRTLSFTTLIDG 198 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc----------ceEEEEEcc-CceE--EEEecCCC----cceEEEEEEEeccc
Confidence 44544 3344567789999999886433 448999998 7776 67777775 44445555433 3
Q ss_pred c--EEEEEecc-CCeeeEEEEec
Q 004735 313 E--LFFVTDRK-NGFWNLHKWIE 332 (732)
Q Consensus 313 ~--l~~~~~~~-~g~~~l~~~d~ 332 (732)
- .+|.+... .....++.++-
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 2 34444331 22334555554
No 485
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.11 E-value=11 Score=37.56 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEE--EEEEEECCCCceEEeccC
Q 004735 322 NGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS--YLGILDDFGHSLSLLDIP 399 (732)
Q Consensus 322 ~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~--~ly~~~~~~~~~~~lt~~ 399 (732)
+.+.+|..+|.++++++.|-.+.... .-.|.-..+++..-| -++.|+++. .||.. -||.++..+|+.++|...
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~-~~~WaGEVSdIlYdP---~~D~LLlAR-~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHD-KTKWAGEVSDILYDP---YEDRLLLAR-ADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCC-ccccccchhheeeCC---CcCEEEEEe-cCCcceeeeEEEcccCCceeeccCC
Confidence 45678999999999999998765443 346765555554432 345566554 45654 488889999999998764
Q ss_pred CCceEEeeEeCCEEEEEEeC--CCCCcEEEEEEcCCCcc
Q 004735 400 FTDIDNITLGNDCLFVEGAS--GVEPSSVAKVTLDDHKL 436 (732)
Q Consensus 400 ~~~v~~~~~~~~~~~~~~~~--~~~~~~ly~~dl~~~~~ 436 (732)
..--..+..+ ..|+.-+ ..+...|..+|+.+++.
T Consensus 150 ps~KG~~~~D---~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 150 PSLKGTLVHD---YACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CCcCceEeee---eEEEeccccccCCceEEEEEccCCeE
Confidence 3221111211 1222222 23345699999998885
No 486
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.11 E-value=20 Score=35.97 Aligned_cols=184 Identities=11% Similarity=0.026 Sum_probs=90.6
Q ss_pred EEeCCCCeEEEEeCCCCCC-CceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccE
Q 004735 159 FSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPK 237 (732)
Q Consensus 159 f~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 237 (732)
.+...+++|.+++... = ...-+... .-+.++.+.+|.|+.-+.|..+ ..|-.+++-.|+...+.
T Consensus 101 lS~sdDG~i~iw~~~~--W~~~~slK~H----~~~Vt~lsiHPS~KLALsVg~D---------~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGS--WELLKSLKAH----KGQVTDLSIHPSGKLALSVGGD---------QVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeecCCCcEEEEEcCC--eEEeeeeccc----ccccceeEecCCCceEEEEcCC---------ceeeeehhhcCccceee
Confidence 3445677788887653 1 11112222 3347888999999965555442 35666677766621122
Q ss_pred EcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEE
Q 004735 238 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 317 (732)
Q Consensus 238 ~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~ 317 (732)
.|-.. .....|+|.|.+.+.+..+ .|-++.++ +..+ ...+... .......|...+.|+ +
T Consensus 166 ~L~~~---at~v~w~~~Gd~F~v~~~~---------~i~i~q~d-~A~v--~~~i~~~-----~r~l~~~~l~~~~L~-v 224 (362)
T KOG0294|consen 166 NLKNK---ATLVSWSPQGDHFVVSGRN---------KIDIYQLD-NASV--FREIENP-----KRILCATFLDGSELL-V 224 (362)
T ss_pred ccCCc---ceeeEEcCCCCEEEEEecc---------EEEEEecc-cHhH--hhhhhcc-----ccceeeeecCCceEE-E
Confidence 33222 2337899999988766522 24444444 2222 1111111 112233343333243 3
Q ss_pred EeccCCeeeEEEEeccCCeEE-EecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCc
Q 004735 318 TDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 392 (732)
Q Consensus 318 ~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~ 392 (732)
..+ + ..+-..|-+.+..- .++..+.. ..++.+..+ +...++.+...+|.-.+|-++.++++
T Consensus 225 G~d-~--~~i~~~D~ds~~~~~~~~AH~~R---------VK~i~~~~~--~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 225 GGD-N--EWISLKDTDSDTPLTEFLAHENR---------VKDIASYTN--PEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ecC-C--ceEEEeccCCCccceeeecchhh---------eeeeEEEec--CCceEEEEeccCceEEEEEccccccC
Confidence 322 2 33444555442211 11111111 122222211 34567778888999999988877654
No 487
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=88.02 E-value=5.8 Score=41.63 Aligned_cols=157 Identities=15% Similarity=0.059 Sum_probs=81.4
Q ss_pred eeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCcEEEEEeccCCee
Q 004735 246 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFW 325 (732)
Q Consensus 246 ~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~l~~~~~~~~g~~ 325 (732)
+....-+|+|.+|+--. -...||++.+. +|.+ +..+...- +.+.-..++.||..+|++.. .|.-
T Consensus 84 v~al~s~n~G~~l~ag~--------i~g~lYlWels-sG~L--L~v~~aHY----Q~ITcL~fs~dgs~iiTgsk-Dg~V 147 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT--------ISGNLYLWELS-SGIL--LNVLSAHY----QSITCLKFSDDGSHIITGSK-DGAV 147 (476)
T ss_pred eeeeecCCCceEEEeec--------ccCcEEEEEec-cccH--HHHHHhhc----cceeEEEEeCCCcEEEecCC-CccE
Confidence 44456689998775331 13349999999 8976 44444443 56778889999986666655 5655
Q ss_pred eEEEE----eccCC-eEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCce-EEeccC
Q 004735 326 NLHKW----IESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLDIP 399 (732)
Q Consensus 326 ~l~~~----d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~-~~lt~~ 399 (732)
.+|.+ +.+.. ....+-. +..-. ....++..-. +.-+.-++++..|..-.+|-+. .|.+ ..++.
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~----f~~Ht--lsITDl~ig~--Gg~~~rl~TaS~D~t~k~wdlS--~g~LLlti~f- 216 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHI----FSDHT--LSITDLQIGS--GGTNARLYTASEDRTIKLWDLS--LGVLLLTITF- 216 (476)
T ss_pred EEEEEEeecccccCCCccceee----eccCc--ceeEEEEecC--CCccceEEEecCCceEEEEEec--cceeeEEEec-
Confidence 55522 22211 1111110 00000 0111222210 0112344555566667777554 4443 23333
Q ss_pred CCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcC
Q 004735 400 FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 432 (732)
Q Consensus 400 ~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~ 432 (732)
+..+..+ .++..+.+|++++.. .+|..++.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G---~I~~~~~~ 247 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEG---KIFQNLLF 247 (476)
T ss_pred CCcceeEEEcccccEEEecCCcc---eEEeeehh
Confidence 3345555 456677777777654 45555443
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.86 E-value=1.4 Score=35.68 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=35.7
Q ss_pred CeEEEEeCCCCCCCceecCCCCCCCCeEe-eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCC
Q 004735 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (732)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~ 230 (732)
|+|+.+|+.+ ++.+.|..+ +.+ +..++|||+++|++.... ..+|.++-++|
T Consensus 37 GRll~ydp~t--~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et~--------~~Ri~rywl~G 88 (89)
T PF03088_consen 37 GRLLRYDPST--KETTVLLDG-----LYFPNGVALSPDESFVLVAETG--------RYRILRYWLKG 88 (89)
T ss_dssp EEEEEEETTT--TEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEGG--------GTEEEEEESSS
T ss_pred cCEEEEECCC--CeEEEehhC-----CCccCeEEEcCCCCEEEEEecc--------CceEEEEEEeC
Confidence 6899999998 777777654 333 678899999997666442 25777766653
No 489
>PLN02606 palmitoyl-protein thioesterase
Probab=87.84 E-value=2.9 Score=42.26 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCCCccCCcccHHHHHHHHC-CCEEEEEcCCCCCCCChhhHHhhccCCCcccHHHHHHHHHHHHhcCCCC
Q 004735 494 KPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 572 (732)
Q Consensus 494 ~~P~vl~~HGg~~~~~~~~~~~~~~~l~~~-G~~v~~~d~rG~~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 572 (732)
+.| ||+.||.+.......+....+.+... |+-+..+-. |. +.-.++. + ..-+.+..+.+.+.+....
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~i-g~-~~~~s~~-------~-~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVEI-GN-GVQDSLF-------M-PLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEEE-CC-Ccccccc-------c-CHHHHHHHHHHHHhcchhh-
Confidence 345 55689986555556666677777533 665555542 21 1111111 1 1123334444444443222
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCC--cceEEEeec
Q 004735 573 EKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLY 605 (732)
Q Consensus 573 ~~ri~i~G~S~GG~~a~~~~~-~p~--~~~a~v~~~ 605 (732)
.+-+-++|+|.||.+.=.++. .|+ .++-.|.++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlg 129 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLG 129 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEec
Confidence 346899999999999888877 554 366666554
No 490
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=45 Score=38.51 Aligned_cols=241 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred CceeEEECCEEEEEeCCCC-eEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEE
Q 004735 147 GGAFRIFGDTVIFSNYKDQ-RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (732)
Q Consensus 147 ~~~~~~~~~~i~f~~~~~~-~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (732)
+.+|.++.-+|+.+-.... +||-+.+. --..+.... .-......|+|++- +||+..+. ..|-+
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeH----dGpVRgv~FH~~qp--lFVSGGDD-------ykIkV 77 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEH----DGPVRGVDFHPTQP--LFVSGGDD-------YKIKV 77 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhcc----CCccceeeecCCCC--eEEecCCc-------cEEEE
Q ss_pred EEcCCCCccccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcC
Q 004735 226 IALNGQNIQEPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 305 (732)
Q Consensus 226 ~d~~~~~~~~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (732)
++.++.+- .-.|....+++....|.+-=-||.-.+ +...|.+++.. +++. +.++++.. .++.-
T Consensus 78 WnYk~rrc--lftL~GHlDYVRt~~FHheyPWIlSAS--------DDQTIrIWNwq-sr~~--iavltGHn----HYVMc 140 (1202)
T KOG0292|consen 78 WNYKTRRC--LFTLLGHLDYVRTVFFHHEYPWILSAS--------DDQTIRIWNWQ-SRKC--IAVLTGHN----HYVMC 140 (1202)
T ss_pred Eeccccee--hhhhccccceeEEeeccCCCceEEEcc--------CCCeEEEEecc-CCce--EEEEecCc----eEEEe
Q ss_pred ceeCCCCcEEEEEeccCCeeeEEEEeccCCeEEEeccc---------------------------ccccCCCceeecccc
Q 004735 306 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL---------------------------DAEFSRPLWVFGINS 358 (732)
Q Consensus 306 ~~wspDg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~---------------------------~~~~~~~~w~~~~~~ 358 (732)
.+|.|-..+++++.- .+.+.++|..+-+.+...++ ++...+..|.
T Consensus 141 AqFhptEDlIVSaSL---DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa----- 212 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASL---DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA----- 212 (1202)
T ss_pred eccCCccceEEEecc---cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE-----
Q ss_pred eeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccC--CCceEEeeEeCCEEEEEEeCCCCCcEEEEEEcCCC
Q 004735 359 YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 434 (732)
Q Consensus 359 ~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~dl~~~ 434 (732)
+|. .---++++...+....||+++ +++.++.=|.- ...|+.+.....+=++.+.+.+....+|-++-.++
T Consensus 213 -Afh----pTlpliVSG~DDRqVKlWrmn-etKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 213 -AFH----PTLPLIVSGADDRQVKLWRMN-ETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred -Eec----CCcceEEecCCcceeeEEEec-cccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
No 491
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.31 E-value=15 Score=37.43 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=89.2
Q ss_pred eEEcCCCcEEEEeecCCC-------CCceEEEEcCCCCCCCCcc-cCCCCCcc-cccccccCCceeEEEC-------CEE
Q 004735 94 TAVDGHGRLIWLESRPTE-------AGRGVLVKEPAKAGDEPSD-ITPKEYAV-RTTAQEYGGGAFRIFG-------DTV 157 (732)
Q Consensus 94 ~~~~pg~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~~-l~~~~~~~-~~~~~~~g~~~~~~~~-------~~i 157 (732)
+..++-+++|.++.+.-+ .+...|+.++..++.-.+. .+|+.... .+. ...+.++. ..+
T Consensus 6 v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~-----lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 6 VQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSF-----LNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGG-----EEEEEEECTTTTS-SEEE
T ss_pred EEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccc-----cceEEEEccCCCCcceEE
Confidence 445546788888864311 1234677777765421122 22322111 111 12233332 234
Q ss_pred EEEeCCCCeEEEEeCCCCCCCceecCCCCC--CC-C---------eEe----eceee---cCCCCEEEEEEeccCCCCCC
Q 004735 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EP-L---------VSY----ADGIF---DPRFNRYVTVREDRRQDALN 218 (732)
Q Consensus 158 ~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~--~~-~---------~~~----~~~~~---spdG~~l~~~~~~~~~~~~~ 218 (732)
++++.....|.++|+.+ ++.+++....- .+ . ... ...+. +|||++|+|..-.
T Consensus 81 YItD~~~~glIV~dl~~--~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls------- 151 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLAT--GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS------- 151 (287)
T ss_dssp EEEETTTCEEEEEETTT--TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------
T ss_pred EEeCCCcCcEEEEEccC--CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-------
Confidence 44555556899999987 66655543210 00 0 011 11223 4477766554321
Q ss_pred ceeEEEEEEcCC---CCcc-------ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCce--
Q 004735 219 STTEIVAIALNG---QNIQ-------EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-- 286 (732)
Q Consensus 219 ~~~~l~~~d~~~---~~~~-------~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~~-- 286 (732)
...+|.++.+- .... .++.+........+..++++|. |+|.... ...|+.++.+ +..
T Consensus 152 -s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~-------~~aI~~w~~~--~~~~~ 220 (287)
T PF03022_consen 152 -SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVE-------QNAIGCWDPD--GPYTP 220 (287)
T ss_dssp --SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECC-------CTEEEEEETT--TSB-G
T ss_pred -CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCC-------CCeEEEEeCC--CCcCc
Confidence 14678776432 1100 0122221112334567788775 7776633 3458888876 311
Q ss_pred eeeEEecCCCCCccccCcCceeCC--CCcEEEEEec
Q 004735 287 YKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDR 320 (732)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~wsp--Dg~l~~~~~~ 320 (732)
.+..++...+ +....+..+.+.+ ||.|++.+++
T Consensus 221 ~~~~~l~~d~-~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 221 ENFEILAQDP-RTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp CCEEEEEE-C-C-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred cchheeEEcC-ceeeccceeeeccccCceEEEEECc
Confidence 1223333222 1113455667777 7778877765
No 492
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.31 E-value=52 Score=36.39 Aligned_cols=213 Identities=13% Similarity=0.012 Sum_probs=91.9
Q ss_pred EEEEEeC----CCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCC
Q 004735 156 TVIFSNY----KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (732)
Q Consensus 156 ~i~f~~~----~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~ 231 (732)
.++|... .....|++|.+ |..|-..... ......+..-++|..++.. . ..++.+|+.|.
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~---G~Vrw~~~~~---~~~~~~~~~l~nG~ll~~~-~----------~~~~e~D~~G~ 177 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNN---GDVRWYLPLD---SGSDNSFKQLPNGNLLIGS-G----------NRLYEIDLLGK 177 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETT---S-EEEEE-GG---GT--SSEEE-TTS-EEEEE-B----------TEEEEE-TT--
T ss_pred cEEEEeCCCCCCCceEEEECCC---ccEEEEEccC---ccccceeeEcCCCCEEEec-C----------CceEEEcCCCC
Confidence 5555554 23478888887 4554332221 1111225567899875443 3 58889999865
Q ss_pred CccccEEcc--cCC-CceeccccCCCCCeEEEEeccC-----CCCCCCccEEEEEEecCCCceeeeEEecCC-C------
Q 004735 232 NIQEPKVLV--SGS-DFYAFPRMDPRGERMAWIEWHH-----PNMPWDKAELWVGYISENGDVYKRVCVAGF-D------ 296 (732)
Q Consensus 232 ~~~~~~~lt--~~~-~~~~~p~~SPDG~~la~~~~~~-----~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~-~------ 296 (732)
. ..... .+. .++-....-|+|..|+.+.... .+..-....|..+| . +|++.+.-.+... +
T Consensus 178 v---~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~-tG~vv~~wd~~d~ld~~~~~~ 252 (477)
T PF05935_consen 178 V---IWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-P-TGEVVWEWDFFDHLDPYRDTV 252 (477)
T ss_dssp E---EEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--T-TS-EEEEEEGGGTS-TT--TT
T ss_pred E---EEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-C-CCCEEEEEehHHhCCcccccc
Confidence 4 33332 221 3344566789999887665211 01001233466677 5 7876543222111 0
Q ss_pred ---------------CCccccCcCceeCC-CCcEEEEEeccCCeeeEEEEeccCCeEEEecccc--cc------------
Q 004735 297 ---------------PTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AE------------ 346 (732)
Q Consensus 297 ---------------~~~~~~~~~~~wsp-Dg~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~------------ 346 (732)
.+| ..+..+.+.+ |+.|++++ | .+..|+.+|..++++.-+.... ..
T Consensus 253 ~~~~~~~~~~~~~~~~DW-~H~Nsi~yd~~dd~iivSs-R--~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd 328 (477)
T PF05935_consen 253 LKPYPYGDISGSGGGRDW-LHINSIDYDPSDDSIIVSS-R--HQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVD 328 (477)
T ss_dssp GGT--SSSSS-SSTTSBS---EEEEEEETTTTEEEEEE-T--TT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-
T ss_pred cccccccccccCCCCCCc-cccCccEEeCCCCeEEEEc-C--cceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeec
Confidence 011 1112334445 44355444 3 3456889998888887665221 11
Q ss_pred ---------cCCCceeecccceeeeeecCCC---CEEEEEEEEC---------------CEEEEEEEECCCCceEEec
Q 004735 347 ---------FSRPLWVFGINSYEIIQSHGEK---NLIACSYRQN---------------GRSYLGILDDFGHSLSLLD 397 (732)
Q Consensus 347 ---------~~~~~w~~~~~~~~~~~~~~~~---~~l~~~s~~~---------------g~~~ly~~~~~~~~~~~lt 397 (732)
.....|.-+.+...+++ ++ ..++|--... .+.-.|++|.+.+..+++-
T Consensus 329 ~~G~~~~~~~~~~~~~~gQH~~~~~~---~g~~~~l~vFDNg~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~~~vw 403 (477)
T PF05935_consen 329 SNGNPIDCGDGDFDWFWGQHTAHLIP---DGPQGNLLVFDNGNGRGYGQPAYVSPKDNYSRAVEYRIDENKMTVEQVW 403 (477)
T ss_dssp TTS-B-EBSSSS----SS-EEEEE-T---TS---SEEEEE--TTGGGS--SSCCG-----EEEEEEEETTTTEEEEEE
T ss_pred cCCceeeccCCCCcccccccceEEcC---CCCeEEEEEEECCCCCCCCCccccccccccceEEEEEecCCCceEEEEE
Confidence 12234666666677774 55 5555543310 1233577777777666554
No 493
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=87.15 E-value=3.9 Score=40.90 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=58.8
Q ss_pred eccccCCCCCeEEEEeccCCCCCCCccEEEEEEecCCCc-eeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCe
Q 004735 247 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 324 (732)
Q Consensus 247 ~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~ 324 (732)
.--+|++|++.||... +..++.++... +.. ......+...+ ..+..+.|+|.+. |+-.+.+ ++
T Consensus 14 tchAwn~drt~iAv~~--------~~~evhiy~~~-~~~~w~~~htls~Hd----~~vtgvdWap~snrIvtcs~d-rn- 78 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSP--------NNHEVHIYSML-GADLWEPAHTLSEHD----KIVTGVDWAPKSNRIVTCSHD-RN- 78 (361)
T ss_pred eeeeecCCCceEEecc--------CCceEEEEEec-CCCCceeceehhhhC----cceeEEeecCCCCceeEccCC-CC-
Confidence 3457999999998765 34568888877 444 44455666666 7788899999986 6654444 22
Q ss_pred eeEEEEeccCCeEEE---ecccccccCCCceeec
Q 004735 325 WNLHKWIESNNEVLA---IYSLDAEFSRPLWVFG 355 (732)
Q Consensus 325 ~~l~~~d~~~g~~~~---l~~~~~~~~~~~w~~~ 355 (732)
..+|.. +++++.++ |...+.......|+|.
T Consensus 79 ayVw~~-~~~~~WkptlvLlRiNrAAt~V~WsP~ 111 (361)
T KOG1523|consen 79 AYVWTQ-PSGGTWKPTLVLLRINRAATCVKWSPK 111 (361)
T ss_pred cccccc-CCCCeeccceeEEEeccceeeEeecCc
Confidence 334432 25565442 3344555566778873
No 494
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=87.14 E-value=1.4 Score=43.44 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh--C----CCcceEEEeecCcC
Q 004735 556 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F----RDTFKAGASLYGVA 608 (732)
Q Consensus 556 ~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~----p~~~~a~v~~~~~~ 608 (732)
.++...+..+.++. ...+|.+.|||+||.+|..++. . +..+.+....+|-.
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 44555555555542 3468999999999999987765 2 44566666666543
No 495
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.06 E-value=42 Score=37.61 Aligned_cols=116 Identities=9% Similarity=0.050 Sum_probs=54.5
Q ss_pred CcCCHHHHhcc-CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-cccCCCCCcccccccccCCceeEEE
Q 004735 77 SPLTADVVSGA-SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-SDITPKEYAVRTTAQEYGGGAFRIF 153 (732)
Q Consensus 77 ~~~~~~~i~~~-~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~g~~~~~~~ 153 (732)
|.|+..+...+ ..++.-+.|.. .+.++-.+ .+|-+.+|..-.+ .. .+.+... + .+.+. ..+|..+
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD----t~GlIiVWmlykg---sW~EEMiNnR-n-KSvV~---SmsWn~d 126 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSD----TSGLIIVWMLYKG---SWCEEMINNR-N-KSVVV---SMSWNLD 126 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccC----CCceEEEEeeecc---cHHHHHhhCc-C-ccEEE---EEEEcCC
Confidence 33555554444 45667778886 67776644 3566555554332 22 1122111 0 11111 1233344
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEec
Q 004735 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRED 211 (732)
Q Consensus 154 ~~~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~ 211 (732)
|.+|..+. .+|.+.+=.+++ .. +=..+ -.+.......||+|.+.++|-..+
T Consensus 127 G~kIcIvY-eDGavIVGsvdG--NR---IwgKe-Lkg~~l~hv~ws~D~~~~Lf~~an 177 (1189)
T KOG2041|consen 127 GTKICIVY-EDGAVIVGSVDG--NR---IWGKE-LKGQLLAHVLWSEDLEQALFKKAN 177 (1189)
T ss_pred CcEEEEEE-ccCCEEEEeecc--ce---ecchh-cchheccceeecccHHHHHhhhcC
Confidence 55554433 344454444443 10 00000 002233566799999988887653
No 496
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.04 E-value=25 Score=38.28 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=78.5
Q ss_pred cCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceeEEEC-C
Q 004735 78 PLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-D 155 (732)
Q Consensus 78 ~~~~~~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~g~~~~~~~~-~ 155 (732)
+++.+.+......|..+..+| |+.+... ++|.+.|+.... .|....+.+ ..+.|.. +
T Consensus 22 ~l~~k~lg~~~~~p~~ls~npngr~v~V~-----g~geY~iyt~~~---------------~r~k~~G~g-~~~vw~~~n 80 (443)
T PF04053_consen 22 PLSVKELGSCEIYPQSLSHNPNGRFVLVC-----GDGEYEIYTALA---------------WRNKAFGSG-LSFVWSSRN 80 (443)
T ss_dssp ----EEEEE-SS--SEEEE-TTSSEEEEE-----ETTEEEEEETTT---------------TEEEEEEE--SEEEE-TSS
T ss_pred eEEeccCCCCCcCCeeEEECCCCCEEEEE-----cCCEEEEEEccC---------------CcccccCce-eEEEEecCc
Confidence 456666666666788999999 6666662 257888887311 121222222 2344444 3
Q ss_pred EEEEEeCCCCeEEE-EeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCcc
Q 004735 156 TVIFSNYKDQRLYK-HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (732)
Q Consensus 156 ~i~f~~~~~~~l~~-~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 234 (732)
+.++.. ..+.|-+ -+++. ...+.+... .. .+--|. |.. +++..+ ..|..+|..+++.
T Consensus 81 ~yAv~~-~~~~I~I~kn~~~--~~~k~i~~~-----~~-~~~If~--G~L-L~~~~~---------~~i~~yDw~~~~~- 138 (443)
T PF04053_consen 81 RYAVLE-SSSTIKIYKNFKN--EVVKSIKLP-----FS-VEKIFG--GNL-LGVKSS---------DFICFYDWETGKL- 138 (443)
T ss_dssp EEEEE--TTS-EEEEETTEE---TT-----S-----S--EEEEE---SSS-EEEEET---------TEEEEE-TTT--E-
T ss_pred cEEEEE-CCCeEEEEEcCcc--ccceEEcCC-----cc-cceEEc--CcE-EEEECC---------CCEEEEEhhHcce-
Confidence 444333 3444555 45543 333344432 11 111233 775 455441 4689999998772
Q ss_pred ccEEcccCCCceeccccCCCCCeEEEEeccCCCCCCCccEEEEEEecC--------CCceeeeEEecCCCCCccccCcCc
Q 004735 235 EPKVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--------NGDVYKRVCVAGFDPTIVESPTEP 306 (732)
Q Consensus 235 ~~~~lt~~~~~~~~p~~SPDG~~la~~~~~~~~~~~~~~~l~v~d~~~--------~g~~~~~~~~~~~~~~~~~~~~~~ 306 (732)
++++.-.+ +....||+||+.+|.+..+ .+++++.+. +|--.....+.+-. ..+...
T Consensus 139 -i~~i~v~~--vk~V~Ws~~g~~val~t~~---------~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg 202 (443)
T PF04053_consen 139 -IRRIDVSA--VKYVIWSDDGELVALVTKD---------SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSG 202 (443)
T ss_dssp -EEEESS-E---EEEEE-TTSSEEEEE-S----------SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEE
T ss_pred -eeEEecCC--CcEEEEECCCCEEEEEeCC---------eEEEEEecchhcccccccCchhceEEEEEec----ceeEEE
Confidence 44444221 3567899999999998622 266666541 11111123333312 456678
Q ss_pred eeCCCCcEEEEE
Q 004735 307 KWSSKGELFFVT 318 (732)
Q Consensus 307 ~wspDg~l~~~~ 318 (732)
.|..| -++|++
T Consensus 203 ~W~~d-~fiYtT 213 (443)
T PF04053_consen 203 CWVED-CFIYTT 213 (443)
T ss_dssp EEETT-EEEEE-
T ss_pred EEEcC-EEEEEc
Confidence 89766 355543
No 497
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=86.80 E-value=38 Score=35.89 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=62.8
Q ss_pred eceeecCCCCEEEEEEeccCCCCCCceeEEEEEEcCCCCccccEEcccCC-CceeccccCCCCCeEEEEeccCCCCCCCc
Q 004735 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQEPKVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDK 272 (732)
Q Consensus 194 ~~~~~spdG~~l~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~lt~~~-~~~~~p~~SPDG~~la~~~~~~~~~~~~~ 272 (732)
....-+|+|.+|+.... ..+||++.+.+|. .-.+.... ..+.-..||-||+.|. ....+
T Consensus 85 ~al~s~n~G~~l~ag~i---------~g~lYlWelssG~---LL~v~~aHYQ~ITcL~fs~dgs~ii-TgskD------- 144 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTI---------SGNLYLWELSSGI---LLNVLSAHYQSITCLKFSDDGSHII-TGSKD------- 144 (476)
T ss_pred eeeecCCCceEEEeecc---------cCcEEEEEecccc---HHHHHHhhccceeEEEEeCCCcEEE-ecCCC-------
Confidence 33456899998766533 3699999999997 32222211 1223357899998764 33222
Q ss_pred cEEEEEEe------cCCCceeeeEEecCCCCCccccCcCceeCCCCc--EEEEEeccCCeeeEEEEeccCCe
Q 004735 273 AELWVGYI------SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 336 (732)
Q Consensus 273 ~~l~v~d~------~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~--l~~~~~~~~g~~~l~~~d~~~g~ 336 (732)
..+.++.+ +.++.+..+..+.+.. ..+.++...+-|. .+|++.. . ..+-.+|+..|.
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht----lsITDl~ig~Gg~~~rl~TaS~-D--~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHT----LSITDLQIGSGGTNARLYTASE-D--RTIKLWDLSLGV 209 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCc----ceeEEEEecCCCccceEEEecC-C--ceEEEEEeccce
Confidence 22443332 2233444455555554 5566666655443 3334332 1 334455666664
No 498
>PLN02454 triacylglycerol lipase
Probab=86.71 E-value=1.1 Score=47.31 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEcChHHHHHHHHHh
Q 004735 555 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 593 (732)
Q Consensus 555 ~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 593 (732)
.+++.+.++.+++++.-..-+|.+.|||+||.+|+.++.
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~ 247 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAF 247 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHH
Confidence 456777888887765322235999999999999988874
No 499
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.59 E-value=34 Score=36.08 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=59.5
Q ss_pred EEEEEeccC--CeeeEEEEeccCCeEEEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECC-C
Q 004735 314 LFFVTDRKN--GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-G 390 (732)
Q Consensus 314 l~~~~~~~~--g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~-~ 390 (732)
|+..+++.. ..-.||++|++++..+.++.....+.. ... ....+.+-.++.++...+|...++|..+-|.+..+ .
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~-~~~-e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~ 193 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIAT-DLS-EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD 193 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE--SSS-SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT
T ss_pred EEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccc-ccc-cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC
Confidence 677787733 346789999988888877632211100 000 00111111111245667778888898888887643 3
Q ss_pred Cc-----eEEeccCCCceEEe-eEeCCEEEEEEeCCCCCcEEEEEEcCC
Q 004735 391 HS-----LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDD 433 (732)
Q Consensus 391 ~~-----~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~dl~~ 433 (732)
+. +|.+.. ...+..+ .++....+|++... ..||+++.+.
T Consensus 194 g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~---~GIW~y~Aep 238 (381)
T PF02333_consen 194 GKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEED---VGIWRYDAEP 238 (381)
T ss_dssp SSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETT---TEEEEEESSC
T ss_pred CcEeeEEEEEecC-CCcceEEEEecccCCEEEecCc---cEEEEEecCC
Confidence 33 344443 2356666 45555666666543 4799998764
No 500
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=86.52 E-value=15 Score=40.10 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred cccccCCceeEEECC-EEEEEeCCCCeEEEEeCCCCCCCceecCCCCCCCCeEeeceeecCCCCEEEEEEeccCCCCCCc
Q 004735 141 TAQEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNS 219 (732)
Q Consensus 141 ~~~~~g~~~~~~~~~-~i~f~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~~~~~~ 219 (732)
+.|.--..+++.+.. .-+.+...+|.+-++.+.+ |...+.... .......+|+|.++.-+......
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~------- 463 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVG------- 463 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEee----cceeEEEEecCCCCceeEEEEec-------
Q ss_pred eeEEEEEEcCCCCccccEEcccC----------------------------------------CCceeccccCCCCCeEE
Q 004735 220 TTEIVAIALNGQNIQEPKVLVSG----------------------------------------SDFYAFPRMDPRGERMA 259 (732)
Q Consensus 220 ~~~l~~~d~~~~~~~~~~~lt~~----------------------------------------~~~~~~p~~SPDG~~la 259 (732)
..+++++..=|. ++..+ ...+.+..|.-+|.+|+
T Consensus 464 -~~~~ivnp~~G~-----~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 464 -ECVLIVNPIFGD-----RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred -CceEEeCccccc-----hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Q ss_pred EEeccCCCCCCCccEEEEEEecCCCceeeeEEecCCCCCccccCcCceeCCCCc-EEEEEeccCCeeeEEEEeccCCe-E
Q 004735 260 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-V 337 (732)
Q Consensus 260 ~~~~~~~~~~~~~~~l~v~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDg~-l~~~~~~~~g~~~l~~~d~~~g~-~ 337 (732)
-+..+. .+..+++.++. .... ...+.-.. +.+....|-|--- +++.+.+ .+.++|+..++ +
T Consensus 538 tV~~~~-----~~~~VliHQLS-K~~s--Q~PF~ksk----G~vq~v~FHPs~p~lfVaTq~-----~vRiYdL~kqelv 600 (733)
T KOG0650|consen 538 TVMPDS-----GNKSVLIHQLS-KRKS--QSPFRKSK----GLVQRVKFHPSKPYLFVATQR-----SVRIYDLSKQELV 600 (733)
T ss_pred EeccCC-----CcceEEEEecc-cccc--cCchhhcC----CceeEEEecCCCceEEEEecc-----ceEEEehhHHHHH
Q ss_pred EEecccccccCCCceeecccceeeeeecCCCCEEEEEEEECCEEEEEEEECCCCceEEeccCCCceEEeeEeCCEEEEEE
Q 004735 338 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEG 417 (732)
Q Consensus 338 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~s~~~g~~~ly~~~~~~~~~~~lt~~~~~v~~~~~~~~~~~~~~ 417 (732)
+.|.++-..+....-++ .|..|++.+. +...-.|-+++.++-.+.|......+.++..-...=+|..
T Consensus 601 KkL~tg~kwiS~msihp------------~GDnli~gs~-d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas 667 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHP------------NGDNLILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS 667 (733)
T ss_pred HHHhcCCeeeeeeeecC------------CCCeEEEecC-CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeee
Q ss_pred eCCCCCcEEE
Q 004735 418 ASGVEPSSVA 427 (732)
Q Consensus 418 ~~~~~~~~ly 427 (732)
+++++.-.++
T Consensus 668 ~sdDgtv~Vf 677 (733)
T KOG0650|consen 668 GSDDGTVIVF 677 (733)
T ss_pred ecCCCcEEEE
Done!