Query 004736
Match_columns 732
No_of_seqs 258 out of 718
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 1E-120 4E-125 1018.1 45.3 498 1-500 5-509 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 1E-115 5E-120 979.7 47.3 479 13-496 4-529 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 2.3E-50 7.9E-55 428.1 25.5 278 36-361 14-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 1.6E-50 5.4E-55 433.2 19.9 284 14-346 10-349 (353)
5 4e8f_A Poly(A) RNA polymerase 100.0 3.1E-48 1.1E-52 423.3 27.9 305 14-368 24-383 (405)
6 3nyb_A Poly(A) RNA polymerase 100.0 5.2E-48 1.8E-52 409.9 23.3 266 32-348 19-299 (323)
7 2b4v_A RNA editing complex pro 100.0 5.8E-40 2E-44 363.8 20.2 305 25-349 10-441 (468)
8 3hj4_A Minor editosome-associa 100.0 3.2E-37 1.1E-41 333.7 20.3 280 32-361 5-379 (384)
9 3pq1_A Poly(A) RNA polymerase; 100.0 5.5E-36 1.9E-40 331.1 26.6 249 35-362 135-460 (464)
10 1r89_A TRNA nucleotidyltransfe 99.3 1.1E-10 3.9E-15 128.6 22.8 333 37-460 6-360 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.1 1.5E-08 5.1E-13 108.2 24.7 270 36-337 9-322 (349)
12 4at7_A Interleukin enhancer-bi 97.9 0.0021 7.3E-08 69.3 24.6 266 27-345 20-295 (364)
13 4at7_B NF90, interleukin enhan 97.3 0.016 5.3E-07 63.1 20.4 261 45-345 21-327 (383)
14 1no5_A Hypothetical protein HI 97.2 0.0013 4.4E-08 59.4 9.4 30 91-120 28-57 (114)
15 2rff_A Putative nucleotidyltra 96.9 0.0024 8.4E-08 57.9 8.0 53 55-119 10-62 (111)
16 1wot_A Putative minimal nucleo 96.7 0.0023 7.8E-08 56.4 6.3 48 59-119 7-54 (98)
17 1ylq_A Putative nucleotidyltra 96.6 0.0047 1.6E-07 54.2 7.7 28 91-118 18-46 (96)
18 4ebj_A Aminoglycoside nucleoti 94.7 0.039 1.3E-06 57.3 6.3 54 53-118 15-68 (272)
19 1kny_A Kntase, kanamycin nucle 94.2 0.044 1.5E-06 55.9 5.4 29 91-119 32-60 (253)
20 2fmp_A DNA polymerase beta; nu 92.7 0.99 3.4E-05 48.1 13.0 116 90-240 172-298 (335)
21 2bcq_A DNA polymerase lambda; 90.5 1.4 4.6E-05 47.1 11.1 115 90-240 169-292 (335)
22 3jz0_A Lincosamide nucleotidyl 89.6 1 3.6E-05 47.2 9.1 105 45-172 12-117 (287)
23 1jaj_A DNA polymerase beta-lik 86.1 1.1 3.6E-05 44.0 6.1 114 83-240 24-142 (174)
24 2ihm_A POL MU, DNA polymerase 85.2 4 0.00014 44.0 10.6 51 89-141 175-225 (360)
25 1jms_A Terminal deoxynucleotid 79.4 12 0.00041 40.6 11.7 51 90-141 196-247 (381)
26 3b0x_A DNA polymerase beta fam 78.1 7.1 0.00024 44.2 9.9 107 90-241 180-286 (575)
27 1v4a_A Glutamate-ammonia-ligas 72.5 7.9 0.00027 42.7 8.1 48 89-136 153-208 (440)
28 3k7d_A Glutamate-ammonia-ligas 62.4 19 0.00065 40.4 8.7 61 76-136 218-289 (498)
29 2fcl_A Hypothetical protein TM 61.2 12 0.00042 36.0 6.1 71 89-168 32-107 (169)
30 2pbe_A AAD6, aminoglycoside 6- 45.4 30 0.001 36.0 6.3 78 91-173 24-112 (294)
31 2w9m_A Polymerase X; SAXS, DNA 41.7 42 0.0015 38.0 7.3 94 93-241 182-276 (578)
32 1v54_I STA, cytochrome C oxida 22.5 53 0.0018 28.0 2.8 38 683-724 3-42 (73)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.1e-120 Score=1018.07 Aligned_cols=498 Identities=42% Similarity=0.752 Sum_probs=451.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004736 1 MSSSERMSSPPPPKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRG 80 (732)
Q Consensus 1 ~~~~~~~~s~~~~~~~Gvt~PiS~~~Pt~~D~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g 80 (732)
|++..+.++++++++||||+|||+++||++|++++.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~pis~~~p~~~d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~ 84 (514)
T 1q79_A 5 VTTQGSQQTQPPQKHYGITSPISLAAPKETDALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKN 84 (514)
T ss_dssp --------------CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccCCcccccCCCCCCcCCCCCHHHHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33333334455789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCeEEEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecC
Q 004736 81 YSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDG 160 (732)
Q Consensus 81 ~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~G 160 (732)
++++++.+.+++|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++|
T Consensus 85 ~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~g 163 (514)
T 1q79_A 85 LPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDG 163 (514)
T ss_dssp CCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHH-HHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETT
T ss_pred CchhhcccCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCccCceEEEecCCcccEEEEEECC
Confidence 9999999999999999999999999999999999999999885 999999999999999999999999999999999999
Q ss_pred ceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCC
Q 004736 161 LSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240 (732)
Q Consensus 161 I~iDLsfa~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~ 240 (732)
|+|||+||++++..+|+++++.|+++|++||+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||
T Consensus 164 i~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~ 243 (514)
T 1q79_A 164 IEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGF 243 (514)
T ss_dssp EEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTS
T ss_pred eeEEEEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCCCceeeccccccccCcccccCCCCCCCCCCceeEeCCCCCCC
Q 004736 241 LGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCM 320 (732)
Q Consensus 241 LGG~swaiLVa~icQlyPn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~ 320 (732)
||||+|+||||++||+||++++++||.+||++|++|||++||++++++++.+++++|+|+.+++|+.|+|||+||++|++
T Consensus 244 lgg~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l~~~~w~p~~~~~dr~~~m~IidP~~P~~ 323 (514)
T 1q79_A 244 LGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQ 323 (514)
T ss_dssp BCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSSCCCCCCTTTCGGGGGCSSCBBCSSSSCC
T ss_pred ccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCCCCcccCCccCCcCcccceeEeCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CcCCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccchhhhcccEEEEEEEeCChhhhhhhhhHHHHHHHHHHH
Q 004736 321 NSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAANADDLLAWKGWVESRLRQLTL 400 (732)
Q Consensus 321 Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~ 400 (732)
|+|+||+.+|+++|++||+||+++++++..++.+|++||+|++||.+|+|||+|+|++.+++++.+|.||||||||.|+.
T Consensus 324 N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~~~~ff~~y~~yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~ 403 (514)
T 1q79_A 324 NSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVG 403 (514)
T ss_dssp BTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEESSHHHHHHHHHHHHTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhCCcchhhhcceEEEEEEEECCHHHhhhheehhhhhHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCceeeccCCCCCcCCCC----CCceeeEEEeeeecC---CCccCCCceecchHHHHHHHHHHhhccccCCceE
Q 004736 401 MIERDTYGKLQCHPYPHEYVDTSK----PCAHCAFFMGLQRKP---GEVVQEGQQFDIRGSVEEFKLSINMYMFWKPGME 473 (732)
Q Consensus 401 ~LE~~~~~~l~ahp~P~~f~~~~~----~~~~~~ffIGL~~~~---~~~~~~~~~~dl~~~v~eF~~~i~~~~~~~~~m~ 473 (732)
+||+. +++..|||||++|.+... ..|.++|||||.++. ....+.+.++||+.++++|++.+++|..|+++|+
T Consensus 404 ~le~~-~~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~~~~~~~di~~~~~~F~~~~~~~~~~~~~~~ 482 (514)
T 1q79_A 404 SLEKN-EFITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMK 482 (514)
T ss_dssp HHHTS-TTEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC----------CCHHHHHHHHHHHHHHHHHTTCCCTTCE
T ss_pred HhccC-CCceeeecCccccCCccccccCCceeEEEEEEEeecccccccccCcccccchHHHHHHHHHHHhhccccCCCcE
Confidence 99985 344569999999987643 357889999999865 2222345679999999999999999999999999
Q ss_pred EEEEeeccCCCCCCcCCCCccccCCCc
Q 004736 474 ICVSHIRRKQIPPYVFPEGYKRTRHPR 500 (732)
Q Consensus 474 i~v~~vkr~~LP~~v~~~g~~~~~~~~ 500 (732)
|+|+|||+++||++||++|++|+|+.+
T Consensus 483 i~v~~vk~~~Lp~~v~~~~~~~~~~~~ 509 (514)
T 1q79_A 483 IAAMHVKRKQLHQLLPSHVLQKKKKHS 509 (514)
T ss_dssp EEEEEEEHHHHGGGCC-----------
T ss_pred EEEEEechHHCchhhcchhccCCCCCC
Confidence 999999999999999999999888754
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=1.4e-115 Score=979.70 Aligned_cols=479 Identities=39% Similarity=0.720 Sum_probs=454.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeE
Q 004736 13 PKQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANAL 92 (732)
Q Consensus 13 ~~~~Gvt~PiS~~~Pt~~D~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~k 92 (732)
+++||||+|||+++||++|++.+.+|+++|++++++||+||.++|++|+++|+++|++|++++++++|++++++.+++++
T Consensus 4 ~~~~g~t~pis~~~p~~~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~ 83 (530)
T 2hhp_A 4 QKVFGITGPVSTVGATAAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGK 83 (530)
T ss_dssp CGGGCSSCCSCCCCCCHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCE
T ss_pred cccCccCCCCcCCCCChHHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeeeccc
Q 004736 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (732)
Q Consensus 93 I~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (732)
|++||||++|+|+|+||||++|++|.+++++ +||..++++|++.++++++++|++|+||||||+++||+|||+|++++.
T Consensus 84 V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~-dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~ 162 (530)
T 2hhp_A 84 IFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQ 162 (530)
T ss_dssp EEEEHHHHHTCCCTTCCEEEEEEECTTCCHH-HHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSS
T ss_pred EEEecccccCCCCCCCceeEEEecCCcCCHH-HHHHHHHHHHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEecccc
Confidence 9999999999999999999999999999885 999999999999899999999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHH
Q 004736 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVAR 252 (732)
Q Consensus 173 ~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaiLVa~ 252 (732)
..+|+++++.++++|++||+++++||||+|++++|++++|+.++||.++|+||+|||+||||++++||||||+|+||||+
T Consensus 163 ~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~ 242 (530)
T 2hhp_A 163 PQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242 (530)
T ss_dssp SCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHH
T ss_pred ccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHhhcCCCCCceeeccccccccCcccccCCCCCCCCCCceeEeCCCCCCCCcCCccCHhHHH
Q 004736 253 VCQLYPNAVPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLR 332 (732)
Q Consensus 253 icQlyPn~s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~ 332 (732)
+||+||++++++||.+||++|++|||++||++++++++.+++++|+|+.|++|+.|+|||+||++|++|+|+||+.+|++
T Consensus 243 ~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~ 322 (530)
T 2hhp_A 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKK 322 (530)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSSCSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCccccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHH
Confidence 99999999999999999999999999999999998888888999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccccccchhhhcccEEEEEEEeC-ChhhhhhhhhHHHHHHHHHHHHhhhcccCcee
Q 004736 333 VMMDQFQYGNTICEEVELNKAQWSALFEPYLFFESYRNYLQVDIVAA-NADDLLAWKGWVESRLRQLTLMIERDTYGKLQ 411 (732)
Q Consensus 333 vI~~EF~RA~~Il~~i~~~~~~W~~Lfep~~FF~~Yk~yl~I~v~a~-~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ 411 (732)
+|++||+||+++++++..++.+|.+||+|++||.+|+|||+|+++++ +++++..|.||||||+|.|+.+||+ .+++..
T Consensus 323 ~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~~~~ff~~y~~~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~-~~~i~~ 401 (530)
T 2hhp_A 323 VILQEFVRGVQITNDIFSNKKSWANLFEKNDFFFRYKFYLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEV-LAGIKI 401 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHTCCCCHHHHCSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT-STTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHcCCCChHHhcCeEEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhc-ccCcee
Confidence 99999999999999998888999999999999999999999999998 9999999999999999999999998 567778
Q ss_pred eccCCCCCcCCC-------------------------------------------CCCceeeEEEeeeecCCCccCCCce
Q 004736 412 CHPYPHEYVDTS-------------------------------------------KPCAHCAFFMGLQRKPGEVVQEGQQ 448 (732)
Q Consensus 412 ahp~P~~f~~~~-------------------------------------------~~~~~~~ffIGL~~~~~~~~~~~~~ 448 (732)
|||||++|.+.. ...+.++|||||.++.. +.+++
T Consensus 402 a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~ 478 (530)
T 2hhp_A 402 AHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNALKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEK 478 (530)
T ss_dssp EEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCSCC---------------CEEEEEEEEEEEEEC-------CCC
T ss_pred eecCCcccCccccccchhhhhhhhccccccccccccccccccccccccccccccccceeeEEEEEEEeecCC---CCCce
Confidence 999999985310 12356899999998753 23568
Q ss_pred ecchHHHHHHHHHHhhccc-cCCc-eE-EEEEeeccCCCCCCcCCCCcccc
Q 004736 449 FDIRGSVEEFKLSINMYMF-WKPG-ME-ICVSHIRRKQIPPYVFPEGYKRT 496 (732)
Q Consensus 449 ~dl~~~v~eF~~~i~~~~~-~~~~-m~-i~v~~vkr~~LP~~v~~~g~~~~ 496 (732)
+||+.++++|++.|++|.. |+++ |+ |.|+|||+++||++||++|++|+
T Consensus 479 ~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~lp~~v~~~~~~~~ 529 (530)
T 2hhp_A 479 VDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYDLPDEVFDENEKRP 529 (530)
T ss_dssp CCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGGCCGGGSCTTSCCC
T ss_pred EeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhhCCHhhccCCCcCC
Confidence 9999999999999999997 8876 89 99999999999999999999774
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2.3e-50 Score=428.13 Aligned_cols=278 Identities=20% Similarity=0.238 Sum_probs=226.9
Q ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCeeEE
Q 004736 36 RELEKFLVEA--GLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDAL 113 (732)
Q Consensus 36 ~eL~~~L~~~--~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll 113 (732)
++|.+++.+. .+.||++|.++|++++++|+++|+++. ++++|++||||++|+++|+||||++
T Consensus 14 ~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~----------------p~~~v~~fGS~~~g~~~~~SDiDl~ 77 (349)
T 4fh3_A 14 KEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRIS----------------PDAELVAFGSLESGLALKNSDMDLC 77 (349)
T ss_dssp HHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCEEEEESHHHHTCCBSSCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEEeeccCCCCCCCCCEEEE
Confidence 4555555431 467999999999999999999998532 2689999999999999999999999
Q ss_pred eecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEe-------cCceeeEEeeeccccccccccccccccc
Q 004736 114 CVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-------DGLSIDLLYASISRLVVREDLDISDMSV 186 (732)
Q Consensus 114 ~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~-------~GI~iDLsfa~l~~~~ipe~l~l~~d~l 186 (732)
|+.|.....+ .++..+...+.. ...+++.|.+|+||||||.+ .|+.||++|++
T Consensus 78 v~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~----------------- 137 (349)
T 4fh3_A 78 VLMDSRVQSD-TIALQFYEELIA--EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------- 137 (349)
T ss_dssp EECCTTSCHH-HHHHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESC-----------------
T ss_pred EecCCCCChH-HHHHHHHHHHHh--hcccceEeeeeeeeeEEEEecccccccccceeecCcCc-----------------
Confidence 9999887764 666666555553 34678889999999999997 37899999876
Q ss_pred cCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHhhC------CC-
Q 004736 187 LNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLY------PN- 259 (732)
Q Consensus 187 L~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaiLVa~icQly------Pn- 259 (732)
.+|++++++|.++++..++||+++++||+|||+||||+++.|+||||+|+|||++|||.. |+
T Consensus 138 -----------~~g~~~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l 206 (349)
T 4fh3_A 138 -----------RLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNL 206 (349)
T ss_dssp -----------HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCS
T ss_pred -----------chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchh
Confidence 479999999999999999999999999999999999999999999999999999999952 32
Q ss_pred -------------------------------CCHHHHHHHHHHHhh-cCCCCCceeecccccccc--Cccccc-------
Q 004736 260 -------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWD------- 298 (732)
Q Consensus 260 -------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~l--g~~~W~------- 298 (732)
.++++||.+||+||+ +|||+++|+......+.+ ..+.|.
T Consensus 207 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~ 286 (349)
T 4fh3_A 207 LLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTG 286 (349)
T ss_dssp SSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC-------
T ss_pred hhccccccccccCcccccccchhhcccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccC
Confidence 358999999999999 699999988654322211 112343
Q ss_pred CCCCCCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCccccccc
Q 004736 299 PRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSALFEP 361 (732)
Q Consensus 299 p~~~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~W~~Lfep 361 (732)
+..+..+..++|+|+||++|++|+|++|+..+++.|++||+||+++|++.. ...+|+.||+.
T Consensus 287 ~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~L~~~~-~~~~~~~lfe~ 348 (349)
T 4fh3_A 287 SADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRS-YPIPYDSLFEE 348 (349)
T ss_dssp --------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHHHHCCS-SSCCGGGGGSC
T ss_pred cccccCCCCceEEEECCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhCcc-cCCCHHHHhhc
Confidence 333334556899999999999999999999999999999999999998743 34689999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=1.6e-50 Score=433.22 Aligned_cols=284 Identities=17% Similarity=0.185 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 004736 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (732)
Q Consensus 14 ~~~Gvt~PiS~~~Pt~~D~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI 93 (732)
..-|++++++.++|+++++ +.+|++++++ ++++.+|.++|++++++|++++++.. .+++|
T Consensus 10 ~~~~~~~~~~~~~P~~~~l--~~~l~~~~~~--~~~~~~e~~~r~~~~~~l~~~i~~~~----------------p~~~v 69 (353)
T 2ikf_A 10 HSSGLVPRGSHMPPSPAVV--GRSLVNSFKQ--FVSKDLHTRHVDATYRLVLDCVAAVD----------------PLMRL 69 (353)
T ss_dssp -------------CCHHHH--HHHHHHHTTT--TCC-----CCHHHHHHHHHHHHHHHC----------------TTCEE
T ss_pred ccccceecccCCCCCHHHH--HHHHHHHHHH--hcCChhhHHHHHHHHHHHHHHHHHHC----------------CCcEE
Confidence 3469999999999999997 7799998875 56888999999999999999998631 36999
Q ss_pred EEecccc-ccCCCCCCCeeEEeecCCccCc--------------cchHHHHHHHHHHhccCCceEEEeccCccceEEEEe
Q 004736 94 FTFGSYR-LGVHGPGADIDALCVGPSYVSR--------------EEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF 158 (732)
Q Consensus 94 ~~FGSy~-lGv~~p~SDIDll~v~P~~v~r--------------e~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~ 158 (732)
++||||+ +|+++|+||||++|+.|..+.. ..+++..+.+.|++.+.+.+++.|.+|+||||||++
T Consensus 70 ~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~ 149 (353)
T 2ikf_A 70 YTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG 149 (353)
T ss_dssp EEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC
T ss_pred EEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc
Confidence 9999998 9999999999999998753210 035788899999987778899999999999999998
Q ss_pred -cCceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCC
Q 004736 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (732)
Q Consensus 159 -~GI~iDLsfa~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (732)
.||+|||+|++ .+|++.++.|..++...++||+++++||+|||+||||+++
T Consensus 150 ~~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~ 201 (353)
T 2ikf_A 150 GGAVDFDITAYR----------------------------RNGVRNSALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASV 201 (353)
T ss_dssp SSSCEEEEEESC----------------------------CHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTS
T ss_pred CCCcEEEEEecC----------------------------ccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCC
Confidence 69999999986 4799999999999999999999999999999999999999
Q ss_pred C-CCcchHHHHHHHHHHHhhC------C------------------------CCCHHHHHHHHHHHhh-cCCCCCceeec
Q 004736 238 T-GFLGGVNWALLVARVCQLY------P------------------------NAVPSMLVSRFFRVYT-MWRWPNPVMLC 285 (732)
Q Consensus 238 ~-G~LGG~swaiLVa~icQly------P------------------------n~s~~~LL~~FF~~Ys-~wdW~~pV~l~ 285 (732)
. |+||||+|+|||++|||.. | +.++++||.+||+||+ +|||+++|+..
T Consensus 202 ~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~fd~~~~vIsi 281 (353)
T 2ikf_A 202 IGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLELGTQVLDFLHFFLHEFDSDKQVISL 281 (353)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHHHHHHHHHHHHHHHTSCTTTEEECS
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccHHHHHHHHHHHhccccCcCceEEEc
Confidence 9 9999999999999999852 2 2357999999999999 79999998753
Q ss_pred ccccccc--CcccccCC------CCCCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHHHHHHHHHHHH
Q 004736 286 AIDEAEL--GFSVWDPR------KNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICE 346 (732)
Q Consensus 286 ~i~~g~l--g~~~W~p~------~~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~ 346 (732)
.. .+.. ..+.|++. .++.++.+.|+|+||++|++|+|++|+.++++.|++||++|++++.
T Consensus 282 ~~-~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~~i~~~f~~A~~~~~ 349 (353)
T 2ikf_A 282 NR-PGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRDFLRRHLEKARDTAL 349 (353)
T ss_dssp SS-SSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHTTTT
T ss_pred CC-CcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 1111 12457642 2223456899999999999999999999999999999999998764
No 5
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=3.1e-48 Score=423.31 Aligned_cols=305 Identities=18% Similarity=0.204 Sum_probs=242.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEE
Q 004736 14 KQYGVTKPISMAGPTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALI 93 (732)
Q Consensus 14 ~~~Gvt~PiS~~~Pt~~D~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI 93 (732)
+-.|..++-|-....+..-+++.+|.++++. +.||+||.++|++++.+|+++++++. .+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~--i~Pt~eE~~~R~~v~~~l~~~i~~~~----------------p~~~v 85 (405)
T 4e8f_A 24 KNLHISKSCSYQKVPNSHKEFTKFCYEVYNE--IKISDKEFKEKRAALDTLRLCLKRIS----------------PDAEL 85 (405)
T ss_dssp --------------CCSCHHHHHHHHHHHHH--HBCCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEE
T ss_pred hcccccccCccccCchHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEE
Confidence 3456666666555555566788889888885 78999999999999999999999753 25899
Q ss_pred EEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEe---c----CceeeEE
Q 004736 94 FTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF---D----GLSIDLL 166 (732)
Q Consensus 94 ~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~---~----GI~iDLs 166 (732)
++|||+++|+++|+||||++|+.|.....+ +++..+.+.|++. ..+++.|.+|+||||||.+ + ||+|||+
T Consensus 86 ~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~-~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs 162 (405)
T 4e8f_A 86 VAFGSLESGLALKNSDMDLCVLMDSRVQSD-TIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIG 162 (405)
T ss_dssp EEESHHHHTCCBSSCCEEEEEECCC---CT-THHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEE
T ss_pred EEEeeccCCCCCCCCCEEEEEEecCCCCHH-HHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEe
Confidence 999999999999999999999998765543 6888999999975 6789999999999999995 4 9999999
Q ss_pred eeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 004736 167 YASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNW 246 (732)
Q Consensus 167 fa~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 246 (732)
|++. +|++.+..|..++...++||+++++||+|||+||||+++.|+||||+|
T Consensus 163 ~~n~----------------------------~g~~~t~ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l 214 (405)
T 4e8f_A 163 FNNR----------------------------LAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGY 214 (405)
T ss_dssp ESCH----------------------------HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHH
T ss_pred eccc----------------------------chHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHH
Confidence 9862 578888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHH-hh-----CCC--------------------------------CCHHHHHHHHHHHhh-cCCCCCceeeccc
Q 004736 247 ALLVARVC-QL-----YPN--------------------------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAI 287 (732)
Q Consensus 247 aiLVa~ic-Ql-----yPn--------------------------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i 287 (732)
+|||++|| |. +|+ .++++||.+||+||+ +|||.+.|+....
T Consensus 215 ~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~ 294 (405)
T 4e8f_A 215 VLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRR 294 (405)
T ss_dssp HHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSS
T ss_pred HHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEec
Confidence 99999999 73 232 468999999999999 8999998876431
Q ss_pred cccccC--cccccCCCC-------CCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 004736 288 DEAELG--FSVWDPRKN-------RRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVELNKAQWSAL 358 (732)
Q Consensus 288 ~~g~lg--~~~W~p~~~-------~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~~~~~W~~L 358 (732)
..+.+. .+.|..... ..++++.|+|+||++|++|+|++|+..+++.|++||+||+++|.+... +.+|+.|
T Consensus 295 ~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~~~-~~~w~~L 373 (405)
T 4e8f_A 295 PDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSY-PIPYDSL 373 (405)
T ss_dssp TTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHHHHHHHHHTCSSS-SCCGGGG
T ss_pred CCcccccccccccccccccccccccccCCceEEEECCCCcccccccCCCHHHHHHHHHHHHHHHHHHhhhcc-CCCHHHH
Confidence 111222 246875421 123568999999999999999999999999999999999999998542 5789999
Q ss_pred ccccchhhhc
Q 004736 359 FEPYLFFESY 368 (732)
Q Consensus 359 fep~~FF~~Y 368 (732)
|+++++..+.
T Consensus 374 f~~~~~~~~~ 383 (405)
T 4e8f_A 374 FEEAPIPPRR 383 (405)
T ss_dssp GSCCCCC---
T ss_pred hCcCCCcccc
Confidence 9999998753
No 6
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-48 Score=409.94 Aligned_cols=266 Identities=22% Similarity=0.301 Sum_probs=228.5
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCee
Q 004736 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (732)
Q Consensus 32 ~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID 111 (732)
-.+++||.++.+ .+.||+||.++|++++++|+++++++. .+++|++|||+++|+++|+||||
T Consensus 19 ~~L~~Ei~~f~~--~i~Pt~eE~~~R~~~~~~l~~~~~~~~----------------p~~~v~~fGS~~~g~~~~~SDiD 80 (323)
T 3nyb_A 19 DWLTFEIKDFVA--YISPSREEIEIRNQTISTIREAVKQLW----------------PDADLHVFGSYSTDLYLPGSDID 80 (323)
T ss_dssp HHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHHHHHHTTC----------------TTCCEEEESTTTTTCCCTTSCEE
T ss_pred HHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCccccCCCCCCCCce
Confidence 346667777766 478999999999999999999998653 25789999999999999999999
Q ss_pred EEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEe--cCceeeEEeeeccccccccccccccccccCC
Q 004736 112 ALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDLDISDMSVLND 189 (732)
Q Consensus 112 ll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ipe~l~l~~d~lL~~ 189 (732)
++|+.|.......+++..+++.|++.+.+++++.|.+|+||||||++ .||+|||+|++
T Consensus 81 l~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~-------------------- 140 (323)
T 3nyb_A 81 CVVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER-------------------- 140 (323)
T ss_dssp EEECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC--------------------
T ss_pred EEEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC--------------------
Confidence 99999876432246888999999998888999999999999999996 79999999986
Q ss_pred CCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHhhCCC---------C
Q 004736 190 VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPN---------A 260 (732)
Q Consensus 190 lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaiLVa~icQlyPn---------~ 260 (732)
.+|++++++|.++++..++||+++++||+|||+||||+++.|+||||+|+|||+++||++|+ .
T Consensus 141 --------~~g~~~t~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~ 212 (323)
T 3nyb_A 141 --------TNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKD 212 (323)
T ss_dssp --------SSTTHHHHHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGG
T ss_pred --------cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccc
Confidence 37899999999999999999999999999999999999999999999999999999999985 3
Q ss_pred CHHHHHHHHHHHhh-cCCCCCceeeccccccc---cCcccccCCCCCCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHH
Q 004736 261 VPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAE---LGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 336 (732)
Q Consensus 261 s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~---lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~ 336 (732)
++++||.+||+||+ +|||++.++... .|. .....|+.- ++..+.+.|+|+||++|++|+++++. .++.|++
T Consensus 213 ~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~--~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~ 287 (323)
T 3nyb_A 213 NLGVLLIEFFELYGKNFGYDDVALGSS--DGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGSF--NIRDIKK 287 (323)
T ss_dssp CHHHHHHHHHHHHHHTCCTTTEEEEES--SSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTCT--THHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCCcEEEEe--cCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccchH--HHHHHHH
Confidence 68999999999999 899999877532 221 122456532 22234678999999999999999853 5899999
Q ss_pred HHHHHHHHHHHh
Q 004736 337 QFQYGNTICEEV 348 (732)
Q Consensus 337 EF~RA~~Il~~i 348 (732)
||++|++++.+-
T Consensus 288 ~F~~A~~~L~~~ 299 (323)
T 3nyb_A 288 AFAGAFDLLTNR 299 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=5.8e-40 Score=363.82 Aligned_cols=305 Identities=14% Similarity=0.179 Sum_probs=215.4
Q ss_pred CCCCHHHHHh-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccc-ccc
Q 004736 25 AGPTEADMQR-NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSY-RLG 102 (732)
Q Consensus 25 ~~Pt~~D~~~-s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy-~lG 102 (732)
-.|.+..+.. ...+.+...+.+ +++++.+.|++++++|+.++++|. .+++|++|||| .+|
T Consensus 10 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~a~~~l~~~v~~~~----------------p~a~v~~FGS~v~~G 71 (468)
T 2b4v_A 10 LNPSPDHYAVWGKAIMAENNRRV--GPEHMFRTAIRAQQQLQGLADKWT----------------PDAKVYCCGSMVTYG 71 (468)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHB--CCHHHHHHHHHHHHHHHHHHHHHC----------------TTCEEEEETHHHHHS
T ss_pred CCCChHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeCchhcC
Confidence 3455554432 334444444333 788999999999999999999875 26999999999 799
Q ss_pred CCCCCCCeeEEeecCCccCcc-chHH--HHHHHHHHhc-cC--CceEEEeccCccceEEEEecC----------------
Q 004736 103 VHGPGADIDALCVGPSYVSRE-EDFF--FILHNILAEM-EE--VTELQPVLDAHVPVMKFKFDG---------------- 160 (732)
Q Consensus 103 v~~p~SDIDll~v~P~~v~re-~dFF--~~l~~~L~~~-~~--V~~l~~I~~ArVPIIKf~~~G---------------- 160 (732)
+++|+||||++|+.+.....+ .... .++...|++. ++ +.++++|.+||||||||++.+
T Consensus 72 l~lp~SDiDl~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~ 151 (468)
T 2b4v_A 72 QMERGSDLDLACMFDDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEE 151 (468)
T ss_dssp SCBTTCCEEEEEECSSSSCCHHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHH
T ss_pred CCCCCCceeEEEecCCCCccchhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEecccccccccccccccccc
Confidence 999999999999987322111 1111 2477888875 44 578999999999999998321
Q ss_pred --------------------------------------------ceeeEEeeecccc-----ccccc--cc--cccccc-
Q 004736 161 --------------------------------------------LSIDLLYASISRL-----VVRED--LD--ISDMSV- 186 (732)
Q Consensus 161 --------------------------------------------I~iDLsfa~l~~~-----~ipe~--l~--l~~d~l- 186 (732)
..+|++|.+.... ..|+. +. +.++-.
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 231 (468)
T 2b4v_A 152 DRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTR 231 (468)
T ss_dssp HHHHTEEEEEEESCCCCHHHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEE
T ss_pred ccccccccccccccccccccccchhhhcccccccccccccccccccceeecccccchhhhhccccccccccccccccccc
Confidence 1245666642110 01110 00 000000
Q ss_pred ----------cCCCC-cccccccchhhHHHHHHHhCCCchh-HHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHH
Q 004736 187 ----------LNDVD-EPTVRSLNGCRVADQILKLVPNVEH-FCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVC 254 (732)
Q Consensus 187 ----------L~~lD-e~svrSLNG~Rvtd~IlrlVP~~~~-FR~llr~IK~WAK~RGIysn~~G~LGG~swaiLVa~ic 254 (732)
..++. +.|.. .+|++.+++|..++..+++ ||+|+++||+|||+||||+++.|+||||+|+|||++|+
T Consensus 232 ~~ld~rf~~~~~gi~~DISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fL 310 (468)
T 2b4v_A 232 DVLDVRFVPEMFMYRWDISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYL 310 (468)
T ss_dssp EESCTTSCCGGGSSCEEEESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHH
T ss_pred ccccccccccccceEEEEecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHH
Confidence 11111 23555 7999999999999888889 99999999999999999999999999999999999999
Q ss_pred hhC-----------------CC------------CCHHHHHHHHHHHhh-cCCCCCceeecccccccc--CcccccCCCC
Q 004736 255 QLY-----------------PN------------AVPSMLVSRFFRVYT-MWRWPNPVMLCAIDEAEL--GFSVWDPRKN 302 (732)
Q Consensus 255 Qly-----------------Pn------------~s~~~LL~~FF~~Ys-~wdW~~pV~l~~i~~g~l--g~~~W~p~~~ 302 (732)
|.. |+ .++++||.+||+||+ +|||.+.|+..... +.. ..+.|+...+
T Consensus 311 Q~~~~lP~v~P~vlP~lq~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vISir~g-~~~~K~~~~w~~~~n 389 (468)
T 2b4v_A 311 LVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRN-RRSYRSDIGWNFPQN 389 (468)
T ss_dssp HHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSS-SCEEHHHHTCCCGGG
T ss_pred HhcCcCCCCCcccccchhhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEEecCC-cceeccccccccccc
Confidence 865 11 148999999999999 89999987743211 111 1245764222
Q ss_pred C-CCCCCceeEeCCCCC----CCCcCCccCHhHHHHHHHHHHHHHHHHHHhh
Q 004736 303 R-RDKTHHMPIITPAYP----CMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (732)
Q Consensus 303 ~-~dr~~~MpIiTP~~P----~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~ 349 (732)
. ....+.|+|+||++| .+|+|++|+..+++.|++||++|+++|++..
T Consensus 390 ~~~~~~~~L~IeDPfd~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 390 KKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp EETTEECSSCBBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCcceEEEECCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 112357999999999 9999999999999999999999999998754
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=3.2e-37 Score=333.66 Aligned_cols=280 Identities=15% Similarity=0.171 Sum_probs=215.0
Q ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCee
Q 004736 32 MQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADID 111 (732)
Q Consensus 32 ~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDID 111 (732)
-+.++|+.++.+ .+.||++|.+.|++++.+|++++++-. .+++|++|||+.+|+++|+||||
T Consensus 5 ~~lt~EI~dFy~--~i~PT~eE~~~R~~vv~~l~~ii~~~~----------------p~~~v~~FGS~~tgl~lp~SDiD 66 (384)
T 3hj4_A 5 REFIRGMMAHYR--ASLPPPEHSVVIHELQKRVLDIGMLAV----------------NKAHVELFGSHVSGFCTPHSDAD 66 (384)
T ss_dssp HHHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHHHHHHHHS----------------TTCEEEEESHHHHSCCCTTCCEE
T ss_pred hHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCcEEEEeeeccCCCCCCCCCee
Confidence 456778888877 478999999999999999999998421 26999999999999999999999
Q ss_pred EEeecCCccC----ccc---hHHHH---HHHHHHhccCCceEEEeccCccceEEEEe--cCceeeEEeeecccccccccc
Q 004736 112 ALCVGPSYVS----REE---DFFFI---LHNILAEMEEVTELQPVLDAHVPVMKFKF--DGLSIDLLYASISRLVVREDL 179 (732)
Q Consensus 112 ll~v~P~~v~----re~---dFF~~---l~~~L~~~~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsfa~l~~~~ipe~l 179 (732)
+++..+.... .+. ..... +.+.+. ..+++.+. |.+||||||||.. +||+|||+|++.
T Consensus 67 lvI~~~~~~~~~~~~~~~~~~~~lrll~L~k~~~-~~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~--------- 135 (384)
T 3hj4_A 67 ISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEAS-AMGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNI--------- 135 (384)
T ss_dssp EEEECTTCCGGGTTCHHHHHHHHHHHHHHHHHHH-HHTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCH---------
T ss_pred EEEecCCCcccccccchhhHHHHHHHHHHHhhcc-cCCeeEEe-ecCcccCEEEEEEcCCCeEEEEEeccc---------
Confidence 9998865321 010 01111 112221 23666665 4599999999996 699999999873
Q ss_pred ccccccccCCCCcccccccchhhHHHHHHHhCCC-chhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHhhCC
Q 004736 180 DISDMSVLNDVDEPTVRSLNGCRVADQILKLVPN-VEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP 258 (732)
Q Consensus 180 ~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~-~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaiLVa~icQlyP 258 (732)
+|++.+..|..+... .++||+|+++||+||++|||++++.|+||||+|+|||++|||.+|
T Consensus 136 -------------------~gi~ns~ll~~y~~~~p~rlr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~ 196 (384)
T 3hj4_A 136 -------------------GGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELG 196 (384)
T ss_dssp -------------------HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHT
T ss_pred -------------------chHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCC
Confidence 678888888888777 457999999999999999999999999999999999999999743
Q ss_pred ---CC------------------------------------CHHHH----HHHHHHHhhcCCCCCceee-cccccc-c--
Q 004736 259 ---NA------------------------------------VPSML----VSRFFRVYTMWRWPNPVML-CAIDEA-E-- 291 (732)
Q Consensus 259 ---n~------------------------------------s~~~L----L~~FF~~Ys~wdW~~pV~l-~~i~~g-~-- 291 (732)
+. ++++| |.+||+||+.|||.+-|+. .++... .
T Consensus 197 vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~ 276 (384)
T 3hj4_A 197 LLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVY 276 (384)
T ss_dssp SSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHH
T ss_pred CCCccccccccCCcccccccHhhhhhhcCCCCcCcCCCCcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCccccccc
Confidence 11 26777 9999999999999997664 332211 0
Q ss_pred -------------cCcccccCC------C----------------CCCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHH
Q 004736 292 -------------LGFSVWDPR------K----------------NRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMD 336 (732)
Q Consensus 292 -------------lg~~~W~p~------~----------------~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~ 336 (732)
...+.|... . ..+..+.++.|+| +.-.+|+++.|+.+....|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 355 (384)
T 3hj4_A 277 ERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQ 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHHHHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHH
T ss_pred chhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccccccCccccccccccceeeee-eccccccceecCccchhHHHH
Confidence 012345410 0 1134568999999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCccccccc
Q 004736 337 QFQYGNTICEEVELNKAQWSALFEP 361 (732)
Q Consensus 337 EF~RA~~Il~~i~~~~~~W~~Lfep 361 (732)
||+||++|+.+-+ ++...+++|..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (384)
T 3hj4_A 356 EFNRLREMLIDKE-SELKFDEVFRE 379 (384)
T ss_dssp HHHHHHHHHTTTG-GGCCHHHHTCC
T ss_pred HHHHHHHHHhccc-ccccHHHHhhh
Confidence 9999999997733 24566666644
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=331.13 Aligned_cols=249 Identities=16% Similarity=0.253 Sum_probs=193.0
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCeeEEe
Q 004736 35 NRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALC 114 (732)
Q Consensus 35 s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~ 114 (732)
++++.++.+ .+-||++|.+.|..++.+|++++++.. ++++|++|||+.+|+++|+||||+++
T Consensus 135 ~~EI~~f~~--~i~PT~eE~~~R~~vv~~le~ii~~~f----------------P~a~V~~FGS~~tGL~lp~SDIDlvl 196 (464)
T 3pq1_A 135 DDQLNTLLK--EFQLTEENTKLRYLTCSLIEDMAAAYF----------------PDCIVRPFGSSVNTFGKLGCDLDMFL 196 (464)
T ss_dssp HHHHHHHHH--HHBCCHHHHHHHHHHHHHHHHHHTTTS----------------TTCEEEEEGGGTSSCCBTTCCEEEEE
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCEEEEeCCCccCCCCCCCCeEEEE
Confidence 345555554 467999999999999999999997421 26999999999999999999999998
Q ss_pred ecCCccCc--------------------c----chHHHHHHHHHHhc-cCCceEEEeccCccceEEEEe--cCceeeEEe
Q 004736 115 VGPSYVSR--------------------E----EDFFFILHNILAEM-EEVTELQPVLDAHVPVMKFKF--DGLSIDLLY 167 (732)
Q Consensus 115 v~P~~v~r--------------------e----~dFF~~l~~~L~~~-~~V~~l~~I~~ArVPIIKf~~--~GI~iDLsf 167 (732)
..+..... + ..++..+.+.|++. +++.+++.|.+||||||||.. .||+|||+|
T Consensus 197 ~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~ 276 (464)
T 3pq1_A 197 DLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTT 276 (464)
T ss_dssp ECC-----CCSCEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEEC
T ss_pred ecCCcccccccccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEec
Confidence 65432100 0 13455667777763 678899999999999999998 499999999
Q ss_pred eeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCC-cchHHH
Q 004736 168 ASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF-LGGVNW 246 (732)
Q Consensus 168 a~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~-LGG~sw 246 (732)
++ .+|++.+..|..+...+++||+|+++||+||++|||++++.|+ ||||+|
T Consensus 277 nn----------------------------~~gi~ns~ll~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL 328 (464)
T 3pq1_A 277 NN----------------------------RIALTSSELLYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSL 328 (464)
T ss_dssp SC----------------------------TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHH
T ss_pred CC----------------------------CcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHH
Confidence 87 3688999999999888999999999999999999999999997 999999
Q ss_pred HHHHHHHHhhCC-----C------------------------------------CCHHHHHHHHHHHhhcCCCCCceeec
Q 004736 247 ALLVARVCQLYP-----N------------------------------------AVPSMLVSRFFRVYTMWRWPNPVMLC 285 (732)
Q Consensus 247 aiLVa~icQlyP-----n------------------------------------~s~~~LL~~FF~~Ys~wdW~~pV~l~ 285 (732)
+|||++|+|... + .++++||.+||+||++|||.+.|+.
T Consensus 329 ~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs- 407 (464)
T 3pq1_A 329 TMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGNFAXXXXXXX- 407 (464)
T ss_dssp HHHHHHHHHSCC-------CCSHHHHTTC---------------------CCCCCCHHHHHHHHHHHGGGCCCCCCCCC-
T ss_pred HHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHhCCCcccccc-
Confidence 999999999752 1 1469999999999999999876652
Q ss_pred cccccccCcccccCCCCCCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHHHHHHHHHHHHHhhh------cCCCcc--c
Q 004736 286 AIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVEL------NKAQWS--A 357 (732)
Q Consensus 286 ~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~~------~~~~W~--~ 357 (732)
| ..|++.||+.+.+..++.|+++|.-||++-.. .+.+|. .
T Consensus 408 --------------------------I------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~~~~~~~~~~~~~wgl~~ 455 (464)
T 3pq1_A 408 --------------------------X------XXXXXXXVSQSQLQKFVDLARESAWILQQEDTDRPSISSNRPWGLVS 455 (464)
T ss_dssp --------------------------C------C-------CHHHHHHHHHHHHHHHHHHHCC-----------CCTTGG
T ss_pred --------------------------c------ccccccccCHHHHHHHHHHHHHHHHHHhhccccCcCCCCCCCcchHH
Confidence 1 67999999999999999999999999985332 234574 5
Q ss_pred ccccc
Q 004736 358 LFEPY 362 (732)
Q Consensus 358 Lfep~ 362 (732)
|+.|.
T Consensus 456 ll~~~ 460 (464)
T 3pq1_A 456 LLLPS 460 (464)
T ss_dssp GCC--
T ss_pred HhccC
Confidence 65553
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.32 E-value=1.1e-10 Score=128.58 Aligned_cols=333 Identities=18% Similarity=0.173 Sum_probs=200.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCC-CCeeEEee
Q 004736 37 ELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPG-ADIDALCV 115 (732)
Q Consensus 37 eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~-SDIDll~v 115 (732)
-+.++|+. +-|+++|.++=+.+.+.|...+++ + +++++..|||+-|.++++ ||||+.++
T Consensus 6 ~~~~~l~~--i~P~~~E~~~~~~~~~~I~~~L~~-~-----------------~~~v~~~GS~AkgT~Lrg~sDIDIfv~ 65 (437)
T 1r89_A 6 ILEKALEL--VIPDEEEVRKGREAEEELRRRLDE-L-----------------GVEYVFVGSYARNTWLKGSLEIDVFLL 65 (437)
T ss_dssp HHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHH-H-----------------TCCEEEEHHHHHTCCCTTCCEEEEEEE
T ss_pred HHHHHHHh--hCCCHHHHHHHHHHHHHHHHHHHh-C-----------------CCeEEEeccccCCCcCCCCCCceEEEE
Confidence 34566653 679999998888888888888875 1 258889999999999987 89999999
Q ss_pred cCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeeeccccccccccccccccccCCCCcccc
Q 004736 116 GPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTV 195 (732)
Q Consensus 116 ~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~~~ipe~l~l~~d~lL~~lDe~sv 195 (732)
.|....++ ++-..-..+.++.- .+. .+.-|.-|-+...+.|+++|+.=|- ++.+..- +
T Consensus 66 f~~~~~~e-~l~~~~l~~~~e~l--~~~-~~~ya~hpyV~~~f~g~~vDVVP~y----------~v~~g~~--------~ 123 (437)
T 1r89_A 66 FPEEFSKE-ELRERGLEIGKAVL--DSY-EIRYAEHPYVHGVVKGVEVDVVPCY----------KLKEPKN--------I 123 (437)
T ss_dssp ECTTSCHH-HHHHHHHHHHHHHS--SSE-EEEESSSEEEEEEETTEEEEEEEEE----------CCSSSSC--------C
T ss_pred cCCCCCHH-HHHHHHHHHHHHHH--HHh-hhhccCCceEEEEecceEEEEEEEE----------EccCCcc--------c
Confidence 98776543 33222222333211 112 2456667888888899999998542 1111110 0
Q ss_pred cccchh----hHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCC--CCCCcchHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 004736 196 RSLNGC----RVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSN--VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRF 269 (732)
Q Consensus 196 rSLNG~----Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn--~~G~LGG~swaiLVa~icQlyPn~s~~~LL~~F 269 (732)
+ .++ .-++++.+...+ ++..+|++|+|.|.-|+|++ ..++++||.+=||++++ .+...+|.
T Consensus 124 ~--tavDrtp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~-- 190 (437)
T 1r89_A 124 K--SAVDRTPFHHKWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVK-- 190 (437)
T ss_dssp C--SHHHHHHHHHHHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHH--
T ss_pred c--ccccCcHHHHHHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHH--
Confidence 0 122 223444333332 88999999999999999987 46789999999999994 12233333
Q ss_pred HHHhhcCCCCCceeeccccccccCcccccCCCCCCCCCCceeEeCCCCCCCCcCCccCHhHHHHHHHHHHHHHHHHHHhh
Q 004736 270 FRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNTICEEVE 349 (732)
Q Consensus 270 F~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P~~Nsa~NVs~sTl~vI~~EF~RA~~Il~~i~ 349 (732)
..+ +|..++.+.- +. + ......++.|+||.+|..|+|.++|..++..+..+-+... .+.
T Consensus 191 --~~~--~w~~~~~Id~-~~---~---------~~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l---~~p- 249 (437)
T 1r89_A 191 --NAR--RWTRRTVIDV-AK---G---------EVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFM---EAP- 249 (437)
T ss_dssp --HHT--TCCTTEEEEG-GG---T---------EEEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHH---HSC-
T ss_pred --HHH--HhCCCeEEec-CC---C---------cccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHH---hCc-
Confidence 333 5655665532 10 0 0011357899999999999999999988887776554332 221
Q ss_pred hcCCCcccccccc--------chhh----hcccEEEEEEEeCChhhhhhhhhHHHHHHHHHHHHhhhcccCceeec-cCC
Q 004736 350 LNKAQWSALFEPY--------LFFE----SYRNYLQVDIVAANADDLLAWKGWVESRLRQLTLMIERDTYGKLQCH-PYP 416 (732)
Q Consensus 350 ~~~~~W~~Lfep~--------~FF~----~Yk~yl~I~v~a~~~e~~~~w~GwVESRlR~Lv~~LE~~~~~~l~ah-p~P 416 (732)
=.++|.|. ++-. +=.+.+.|.....+.-+- ..-|-++--.+.|...||+.....+... .|
T Consensus 250 -----s~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p~~~~D-~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~- 322 (437)
T 1r89_A 250 -----SLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDD-NLYPQLERASRKIFEFLERENFMPLRSAFKA- 322 (437)
T ss_dssp -----CGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECCSCCHH-HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred -----cHHhcCCCCccccCHHHHHHHHHhCCcEEEEEEECCCCCCcc-cchHHHHHHHHHHHHHHHHCCCEEEEecccc-
Confidence 12333221 1111 122456666655543222 3347777777788888888665544333 23
Q ss_pred CCCcCCCCCCceeeEEEeeeecCCC--ccCCCceecchHHHHHHHH
Q 004736 417 HEYVDTSKPCAHCAFFMGLQRKPGE--VVQEGQQFDIRGSVEEFKL 460 (732)
Q Consensus 417 ~~f~~~~~~~~~~~ffIGL~~~~~~--~~~~~~~~dl~~~v~eF~~ 460 (732)
.+. .|..++=|...+-. ....|.++..+.-.+.|.+
T Consensus 323 ---~~~-----~~~l~~e~~~~~lp~~~~~~GPpv~~~~~~~~F~~ 360 (437)
T 1r89_A 323 ---SEE-----FCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLS 360 (437)
T ss_dssp ---CSS-----EEEEEEEESCSCCCSEEEEEEEETTCHHHHHHHHH
T ss_pred ---cCC-----eeEEEEEEcccccCCeeEeeCCCccchhhHHHHHH
Confidence 221 34334444322110 1112334544556778877
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.09 E-value=1.5e-08 Score=108.16 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=144.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCC-eEEEEeccccccCCCCC-CCeeEE
Q 004736 36 RELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDAN-ALIFTFGSYRLGVHGPG-ADIDAL 113 (732)
Q Consensus 36 ~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~-~kI~~FGSy~lGv~~p~-SDIDll 113 (732)
..|.+|+.+ .+-|++++...=+.+++.|...+++-. .+ + .. .+ .. .+++.+|||+-|.++++ ||||++
T Consensus 9 ~~l~~fi~~-~l~p~~~~~~~i~~~~~~I~~~L~~~~----~~-~--~~-~~-~~v~~v~~~GSyargT~lrg~sDiDlv 78 (349)
T 1px5_A 9 RDLDKFIED-HLLPNTXFRTQVKEAIDIVXRFLKERC----FQ-G--TA-DP-VRVSKVVKGGSSGKGTTLRGRSDADLV 78 (349)
T ss_dssp GGHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHHHHT----TC-C------C-CEEEEEEEEEEC--------CEEEEEE
T ss_pred HHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHhhh----cc-c--cc-CC-cceEEEEEecCcCCCcccCCCCceeEE
Confidence 357788863 578999888776777777777776421 01 1 00 00 12 37889999999999985 899999
Q ss_pred eecCCccCcc------chHHHHHHHHHHhc---cCCc-eEEEe-ccCccc-eEEEEe------cCceeeEEeeecccccc
Q 004736 114 CVGPSYVSRE------EDFFFILHNILAEM---EEVT-ELQPV-LDAHVP-VMKFKF------DGLSIDLLYASISRLVV 175 (732)
Q Consensus 114 ~v~P~~v~re------~dFF~~l~~~L~~~---~~V~-~l~~I-~~ArVP-IIKf~~------~GI~iDLsfa~l~~~~i 175 (732)
++.+...+.+ ..+...+.+.|.+. ..+. ..... ..-..| .+.|.+ .|++|||+=|--..-.+
T Consensus 79 V~l~~~~~~~~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~ 158 (349)
T 1px5_A 79 VFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQW 158 (349)
T ss_dssp EEEESCSCTTHHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSC
T ss_pred EEECCCCchhhHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhccc
Confidence 9988643332 13344444455531 1222 22221 111345 366666 47999988653321100
Q ss_pred -----ccccccccccccCC----CCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Q 004736 176 -----REDLDISDMSVLND----VDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNW 246 (732)
Q Consensus 176 -----pe~l~l~~d~lL~~----lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~sw 246 (732)
|+. ++..+ ++.. -+...+..-.-..-.+++.. ....++.++|++|+|-++.+. ....+.+.||.+
T Consensus 159 ~~~~~~~~-~~y~~-li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~l 232 (349)
T 1px5_A 159 TPGYKPNP-EIYVQ-LIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKLKSLIRLVKHWYQTCKK-THGNKLPPQYAL 232 (349)
T ss_dssp CTTSCCCH-HHHHH-HHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHH
T ss_pred ccccCCCh-HHHHH-HHhhccccccCccchhcCHHHHHHHHHh---CcHHHHHHHHHHHHHHHHhhh-cccCCCCChHHH
Confidence 000 00000 0000 00000000001111233332 246899999999999998764 223467899999
Q ss_pred HHHHHHHHhhCCCC---CHHHHHHHHHHHhhcCCCCCceeeccccccccCcccccCCCCC-CC-----------CCCcee
Q 004736 247 ALLVARVCQLYPNA---VPSMLVSRFFRVYTMWRWPNPVMLCAIDEAELGFSVWDPRKNR-RD-----------KTHHMP 311 (732)
Q Consensus 247 aiLVa~icQlyPn~---s~~~LL~~FF~~Ys~wdW~~pV~l~~i~~g~lg~~~W~p~~~~-~d-----------r~~~Mp 311 (732)
-+|+++.....+.. +..+-+..+|++-++|.- ..|. |.. .|. .+ +...-.
T Consensus 233 ELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~-~~i~-------------w~~-~y~~~~~~~~~fl~~~l~~~~p~ 297 (349)
T 1px5_A 233 ELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQK-LCIF-------------WEA-YYDFTNPVVGRCMLQQLKKPRPV 297 (349)
T ss_dssp HHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGG-CEEC-------------CCS-SCCSSSHHHHHHHHHHHTSSSCE
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCc-ccee-------------eec-cccccchhHHhhhhhhhcCCCCe
Confidence 99999988766543 466778888888887631 1121 211 010 00 012236
Q ss_pred EeCCCCCCCCcCCccCHhHHHHHHHH
Q 004736 312 IITPAYPCMNSSYNVSTSTLRVMMDQ 337 (732)
Q Consensus 312 IiTP~~P~~Nsa~NVs~sTl~vI~~E 337 (732)
|+||++|..|++.. +......+..|
T Consensus 298 I~DP~dp~~NVa~~-~~~~~~~~~~~ 322 (349)
T 1px5_A 298 ILDPADPTGNVGGG-DTHSWQRLAQE 322 (349)
T ss_dssp EBCTTCTTCBTTCS-CHHHHHHHHHH
T ss_pred eeCCCCCCCcccCC-chhhHHHHHHH
Confidence 99999999998887 77667766643
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=97.92 E-value=0.0021 Score=69.35 Aligned_cols=266 Identities=15% Similarity=0.073 Sum_probs=158.4
Q ss_pred CCHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCC
Q 004736 27 PTEADMQRNRELEKFLVEAGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGP 106 (732)
Q Consensus 27 Pt~~D~~~s~eL~~~L~~~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p 106 (732)
|.+.|-..++.|++-= ..+.||++|..+=..++.++++++...+. ..|.-+ -.=..|...|||.-|+++.
T Consensus 20 ~~~~d~~~~~~llkr~--~~l~Ps~eEq~~v~~lv~kI~~~ld~liv----~pg~~e----~~L~~V~rVGs~aKgtll~ 89 (364)
T 4at7_A 20 PAPDETSFSEALLKRN--QDLAPNSAEQASILSLVTKINNVIDNLIV----APGTFE----VQIEEVRQVGSYKKGTMTT 89 (364)
T ss_dssp CCCCCHHHHHHHHHHH--HHHSCCHHHHHHHHHHHHHHHHHHHHHHH----CCTTCS----SCEEEEEEEHHHHHTCCCT
T ss_pred CCCChHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHhhhc----CCCccc----cccceeEEeccccCCceec
Confidence 4445666666665532 36899999999988899999888886552 233211 0115789999999999998
Q ss_pred CC-CeeEEeecCCccCcc--chHHHHHHHHHHhccCCceEEE-eccCccceEEEEecCceeeEEeeeccccccccccccc
Q 004736 107 GA-DIDALCVGPSYVSRE--EDFFFILHNILAEMEEVTELQP-VLDAHVPVMKFKFDGLSIDLLYASISRLVVREDLDIS 182 (732)
Q Consensus 107 ~S-DIDll~v~P~~v~re--~dFF~~l~~~L~~~~~V~~l~~-I~~ArVPIIKf~~~GI~iDLsfa~l~~~~ipe~l~l~ 182 (732)
|. |+|++|++..-.+.+ +...+++.+-|+....-..+.. +.+|.+=| .-.+-.+=+.+.. .|.++.-.
T Consensus 90 G~~~~dlVvl~k~lPT~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I---~~~~~~v~i~It~-----tsp~lrk~ 161 (364)
T 4at7_A 90 GHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEI---SSSDATVKILITT-----VPPNLRKL 161 (364)
T ss_dssp TCCEEEEEEEESSCCBHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEE---ECSSCEEEEEEEE-----CHHHHHTC
T ss_pred CCCceeEEEEecCCCCHHHHHHHHHHHHHHhhhhccccceeeccCcceEEE---ecCCCcEEEEEEe-----CChhhccC
Confidence 87 899999987766643 1233455555554321111221 11111111 0011111222211 12222111
Q ss_pred cccccCCCC-cccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHhhCC---
Q 004736 183 DMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYP--- 258 (732)
Q Consensus 183 ~d~lL~~lD-e~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~swaiLVa~icQlyP--- 258 (732)
+ +-..+| ..+..+|-.+|-+.++.....+ ...+.++|++|.-.++.. .++.|.+|++-+|+.+..-.-|
T Consensus 162 d--p~~~Ld~~~cl~aLaalRhAkWfq~na~~-s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~~~~~ 234 (364)
T 4at7_A 162 D--PELHLDIKVLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNNPTRQ 234 (364)
T ss_dssp C--TTTBCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSSTTSS
T ss_pred C--hhHhcCHHHHHHHHHHhhhhHHHHhhccc-cccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcCCCCC
Confidence 1 111233 3477788889999888877765 667889999999666542 2367888777777777766545
Q ss_pred CCCHHHHHHHHHHHhhc-CCCCCceeeccccccccCcccccCCCCCCCCCCceeEeCCCCC-CCCcCCccCHhHHHHHHH
Q 004736 259 NAVPSMLVSRFFRVYTM-WRWPNPVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAYP-CMNSSYNVSTSTLRVMMD 336 (732)
Q Consensus 259 n~s~~~LL~~FF~~Ys~-wdW~~pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~P-~~Nsa~NVs~sTl~vI~~ 336 (732)
..++++-+.++|+..+. +-.|.-. -|.||+.+ ..++..+.+......|..
T Consensus 235 ~l~~~~afRRVLElLAsGillp~~~----------------------------Gi~DPCE~~~~~v~~~lt~qq~e~it~ 286 (364)
T 4at7_A 235 PLALNVAYRRCLQILAAGLFLPGSV----------------------------GITDPCESGNFRVHTVMTLEQQDMVCY 286 (364)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSTTBC----------------------------CCBCTTSSSCCBGGGGSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCcccCCCC----------------------------CCcCCCCCCCcchhccCCHHHHHHHHH
Confidence 46799999999999874 3333211 13355555 345555566555566665
Q ss_pred HHHHHHHHH
Q 004736 337 QFQYGNTIC 345 (732)
Q Consensus 337 EF~RA~~Il 345 (732)
--|.+.+++
T Consensus 287 sAQ~~LRll 295 (364)
T 4at7_A 287 TAQTLVRIL 295 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 13
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=97.29 E-value=0.016 Score=63.15 Aligned_cols=261 Identities=18% Similarity=0.188 Sum_probs=157.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCCcc-------------------ccc---cCCeEEEEeccc
Q 004736 45 AGLYESKEEDEKREQVLGRIRQIAK---DWVKELTRLRGYSDQ-------------------MVE---DANALIFTFGSY 99 (732)
Q Consensus 45 ~~l~pSeEE~~~R~~VL~~L~~iVk---~wv~~v~~~~g~~~~-------------------~~~---~~~~kI~~FGSy 99 (732)
..+||++||.+.=+.++..++..+| +|+.+-.+..+-..+ ... ..=.-|.-.|+|
T Consensus 21 ~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~l 100 (383)
T 4at7_B 21 SSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGLV 100 (383)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEecee
Confidence 3689999999999999999988776 776543221110000 000 001335669999
Q ss_pred cccCCCCC-CCeeEEeecCCccCccchHHHHHHHHHHh-ccCCc----eE-EEeccCccceEEEEecCceeeEEeeeccc
Q 004736 100 RLGVHGPG-ADIDALCVGPSYVSREEDFFFILHNILAE-MEEVT----EL-QPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (732)
Q Consensus 100 ~lGv~~p~-SDIDll~v~P~~v~re~dFF~~l~~~L~~-~~~V~----~l-~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (732)
.-|+.+.| -+.|+|+++..-.++ .+...+.+.|.+ +..++ ++ ..+.+|.+=|-.-....+.|=|++.+..
T Consensus 101 aKGlLLkGd~~veLVvlck~kPT~--~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea~i~i~~~~~p~~~v~I~lTSp~- 177 (383)
T 4at7_B 101 AKGLLLKGDLDLELVLLCKEKPTT--ALLDKVADNLAIQLTTVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPV- 177 (383)
T ss_dssp HHTCCCTTCCEEEEEEEESSCCBH--HHHHHHHHHHHHHHTTTCCCCCEEEEEGGGTEEEEECSSSSCCEEEEEEECHH-
T ss_pred cccceECCCCceeEEEEeCCCCcH--HHHHHHHHHHHHHHhhccCCceEEeecCCcceEEEecCCCCCeEEEEEECCcc-
Confidence 99999965 599999999887775 566666655542 22222 12 2234442222110012355566665431
Q ss_pred ccccccc-------ccccccccCCCC-cccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCcchH
Q 004736 173 LVVREDL-------DISDMSVLNDVD-EPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGV 244 (732)
Q Consensus 173 ~~ipe~l-------~l~~d~lL~~lD-e~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~LGG~ 244 (732)
+++++ .+...+.-..|| ..|+.+|-.+|-+.++............++|++|...++.-- ++-|.+|
T Consensus 178 --~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~----~~pL~~w 251 (383)
T 4at7_B 178 --VREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPT----WGPLRGW 251 (383)
T ss_dssp --HHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGG----GGGGTTH
T ss_pred --cccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCC----cCCCcHh
Confidence 11111 010111111233 347888888888877777666676778999999996666532 3568888
Q ss_pred HHHHHHHHHHhhCC--CCCHHHHHHHHHHHhhcC-CCCC-ceeeccccccccCcccccCCCCCCCCCCceeEeCCCC--C
Q 004736 245 NWALLVARVCQLYP--NAVPSMLVSRFFRVYTMW-RWPN-PVMLCAIDEAELGFSVWDPRKNRRDKTHHMPIITPAY--P 318 (732)
Q Consensus 245 swaiLVa~icQlyP--n~s~~~LL~~FF~~Ys~w-dW~~-pV~l~~i~~g~lg~~~W~p~~~~~dr~~~MpIiTP~~--P 318 (732)
++-+|+.+..-. + ..++++-+.++|+..+.. --|. |+ |.||++ |
T Consensus 252 aLELL~~~ai~s-~~~~l~~~~afRRVLEllasG~lLp~~pg-----------------------------I~DPcEk~p 301 (383)
T 4at7_B 252 PLELLCEKSIGT-ANRPMGAGEALRRVLECLASGIVMPDGSG-----------------------------IYDPCEKEA 301 (383)
T ss_dssp HHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTTTTSTTSCC-----------------------------CBCTTCSSC
T ss_pred HHHHHHHHHhhC-CCCCCCHHHHHHHHHHHHhcCcccCCCCC-----------------------------ccCCCCCCC
Confidence 888888777643 3 356899999999998853 2221 22 556776 6
Q ss_pred CCCcCCccCHhHHHHHHHHHHHHHHHH
Q 004736 319 CMNSSYNVSTSTLRVMMDQFQYGNTIC 345 (732)
Q Consensus 319 ~~Nsa~NVs~sTl~vI~~EF~RA~~Il 345 (732)
..|.+ ..+.-....|..+-+.+.+++
T Consensus 302 t~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 302 TDAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp CBTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 56655 566666777877777666554
No 14
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=97.22 E-value=0.0013 Score=59.42 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=27.1
Q ss_pred eEEEEeccccccCCCCCCCeeEEeecCCcc
Q 004736 91 ALIFTFGSYRLGVHGPGADIDALCVGPSYV 120 (732)
Q Consensus 91 ~kI~~FGSy~lGv~~p~SDIDll~v~P~~v 120 (732)
.+|+.|||++-|-+.++||||++++.+...
T Consensus 28 ~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~ 57 (114)
T 1no5_A 28 YTVWAFGSRVKGKAKKYSDLDLAIISEEPL 57 (114)
T ss_dssp SEEEEEGGGTTTCCCTTCCEEEEEECSSCC
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEeCCCC
Confidence 589999999999999999999999987543
No 15
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=96.89 E-value=0.0024 Score=57.87 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCeeEEeecCCc
Q 004736 55 EKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (732)
Q Consensus 55 ~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~ 119 (732)
..++++++.+++++....++ . + .-..++.|||++-|-+.++||||++++.+..
T Consensus 10 ~~~~~i~~~l~~~~~~l~~~----~--~------~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 10 ESQIRMLKLAKEIVEEVASS----F--P------NLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----C--T------TEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHH----c--C------CccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45677777887777665421 1 1 1267999999999999999999999988653
No 16
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=96.72 E-value=0.0023 Score=56.41 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCeeEEeecCCc
Q 004736 59 QVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (732)
Q Consensus 59 ~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~ 119 (732)
++++.+++.+....+ ..|. ..++.|||++-|-+.++||||++++.+..
T Consensus 7 ~~l~~l~~~i~~l~~----~~~v---------~~v~LFGS~arG~~~~~SDiDl~V~~~~~ 54 (98)
T 1wot_A 7 ETLRARREAVLSLCA----RHGA---------VRVRVFGSVARGEAREDSDLDLLVAFEEG 54 (98)
T ss_dssp HHHHHHHHHHHHHHH----HHTC---------SSCEECSHHHHTCCCTTCCCEEEECCCSS
T ss_pred HHHHHHHHHHHHHHH----HcCC---------cEEEEEccccCCCCCCCCCEEEEEEeCCC
Confidence 566666666654432 2221 46999999999999999999999987643
No 17
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=96.64 E-value=0.0047 Score=54.19 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=26.3
Q ss_pred eEEEEeccccccCCCCC-CCeeEEeecCC
Q 004736 91 ALIFTFGSYRLGVHGPG-ADIDALCVGPS 118 (732)
Q Consensus 91 ~kI~~FGSy~lGv~~p~-SDIDll~v~P~ 118 (732)
.+++.|||++-|-+.++ ||||++++.+.
T Consensus 18 ~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 18 AEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp CEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred cEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 78999999999999999 99999998875
No 18
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=94.73 E-value=0.039 Score=57.26 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCeeEEeecCC
Q 004736 53 EDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPS 118 (732)
Q Consensus 53 E~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~ 118 (732)
|.-.|+.+.+.|+++++...+ ..+ .-.+|+.||||+-|-+.++||||++++...
T Consensus 15 ~~~~~q~Vq~eL~~ive~L~~----~~~--------~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 15 ENLYFQGVQHTIARWVDRLRE----EYA--------DAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HCT--------TEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred hccChHHHHHHHHHHHHHHHH----hcC--------CceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 344566666666666654332 111 016899999999999999999999998754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=94.18 E-value=0.044 Score=55.85 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=26.2
Q ss_pred eEEEEeccccccCCCCCCCeeEEeecCCc
Q 004736 91 ALIFTFGSYRLGVHGPGADIDALCVGPSY 119 (732)
Q Consensus 91 ~kI~~FGSy~lGv~~p~SDIDll~v~P~~ 119 (732)
..|+.|||++-|-..++||||++++....
T Consensus 32 ~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 32 KAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp EEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred eEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 67999999999999999999999987643
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.72 E-value=0.99 Score=48.14 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=77.0
Q ss_pred CeEEEEeccccccCCCCCCCeeEEeecCCccCcc---chHHHHHHHHHHhccCCceEEEeccCccceE-EEEe-------
Q 004736 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE---EDFFFILHNILAEMEEVTELQPVLDAHVPVM-KFKF------- 158 (732)
Q Consensus 90 ~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re---~dFF~~l~~~L~~~~~V~~l~~I~~ArVPII-Kf~~------- 158 (732)
..++..-||||=|--+ ..|||+|+..|...... ..++..+.+.|.+.+.++++......+.-++ ++..
T Consensus 172 ~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~~ 250 (335)
T 2fmp_A 172 EYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250 (335)
T ss_dssp TCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCCC
T ss_pred CcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccCC
Confidence 5899999999998877 56999999988432211 2578888899999888887766666654333 3322
Q ss_pred cCceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCC
Q 004736 159 DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVT 238 (732)
Q Consensus 159 ~GI~iDLsfa~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~ 238 (732)
.++.|||.++....- .-.++-+-.+ ..| .|-++.||+++|+.=|-+
T Consensus 251 ~~~rVDl~~vp~~~~------------------------------~~aLl~fTGS-~~f---nr~lR~~A~~kG~kl~e~ 296 (335)
T 2fmp_A 251 PHRRIDIRLIPKDQY------------------------------YCGVLYFTGS-DIF---NKNMRAHALEKGFTINEY 296 (335)
T ss_dssp CCEEEEEEECCGGGH------------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTEEECSS
T ss_pred CceEEEEEEECHHHH------------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCccccc
Confidence 278999998753210 1122222222 222 367888999999776667
Q ss_pred CC
Q 004736 239 GF 240 (732)
Q Consensus 239 G~ 240 (732)
|.
T Consensus 297 Gl 298 (335)
T 2fmp_A 297 TI 298 (335)
T ss_dssp CE
T ss_pred cc
Confidence 75
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=90.55 E-value=1.4 Score=47.14 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=74.0
Q ss_pred CeEEEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEec-----cCcc-ceEEEEe---cC
Q 004736 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVL-----DAHV-PVMKFKF---DG 160 (732)
Q Consensus 90 ~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~-----~ArV-PIIKf~~---~G 160 (732)
..++..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.+++.-... ..+. =|.++.. .+
T Consensus 169 ~~~v~i~GS~RRgket-~gDiDilit~~~~~~~-~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~~~~~ 246 (335)
T 2bcq_A 169 GLLCVACGSYRRGKAT-CGDVDVLITHPDGRSH-RGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRH 246 (335)
T ss_dssp TCEEEECHHHHTTCSE-ESSEEEEEECTTSSTT-TTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSSTTCCC
T ss_pred CcEEEEccccccCCCC-CCCeEEEEecCCchhh-hhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCCCCCc
Confidence 5789999999999877 5699999998865433 367888889999888777643331 1121 1112221 57
Q ss_pred ceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCC
Q 004736 161 LSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGF 240 (732)
Q Consensus 161 I~iDLsfa~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~ 240 (732)
+.|||.++.... + .-.++-+-.+ ..| -|.++.||+++|+.=|-+|.
T Consensus 247 ~rVDl~~vp~~~--~----------------------------g~ALl~fTGS-~~f---nr~lR~~A~~~G~kL~e~Gl 292 (335)
T 2bcq_A 247 RRLDIIVVPYSE--F----------------------------ACALLYFTGS-AHF---NRSMRALAKTKGMSLSEHAL 292 (335)
T ss_dssp EEEEEEECCGGG--H----------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEECSSCE
T ss_pred eEEEEEEECHHH--H----------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcccccc
Confidence 899999875321 0 1122222222 222 37888999999987777775
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=89.56 E-value=1 Score=47.19 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=58.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCeEEEEeccccccCCCCCCCeeEEeecCCccCccc
Q 004736 45 AGLYESKEEDEKREQVLGRIRQIAKDWVKELTRLRGYSDQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREE 124 (732)
Q Consensus 45 ~~l~pSeEE~~~R~~VL~~L~~iVk~wv~~v~~~~g~~~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re~ 124 (732)
.|+.|.---+...++++++|.+.+++- ..--.|+.+||+..|-...-||||++++...... +
T Consensus 12 ~~~~~~~~~m~~~~e~l~~I~~~~~~d----------------~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~--~ 73 (287)
T 3jz0_A 12 SGLVPRGSHMLKQKELIANVKNLTESD----------------ERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT--S 73 (287)
T ss_dssp ----------CHHHHHHHHHHHHHHHC----------------TTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT--T
T ss_pred cCcCCCCCCccCHHHHHHHHHHHHhcC----------------CCEEEEEEECCccCCCCCCccceeEEEEEcCcch--h
Confidence 466776666777778888887777531 0125689999999999999999999998753211 1
Q ss_pred hHHHHHHHHHHhccCCceEEEeccCccceEEEEe-cCceeeEEeeeccc
Q 004736 125 DFFFILHNILAEMEEVTELQPVLDAHVPVMKFKF-DGLSIDLLYASISR 172 (732)
Q Consensus 125 dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~-~GI~iDLsfa~l~~ 172 (732)
.| .. ..-|.....+-- ..++.++- .++.| +|+.|||.|..+..
T Consensus 74 ~f-~~-~~Wl~~fG~~~~--~f~~~~~~-~l~lF~Dg~riDl~l~~~~~ 117 (287)
T 3jz0_A 74 NF-DS-SNWLFDVAPYLM--LYKNEYGT-EVVIFDNLIRGEFHFLSEKD 117 (287)
T ss_dssp TC-CH-HHHHHHHCCEEE--EEECTTSC-EEEEETTSCEEEEEEEEGGG
T ss_pred hh-hh-HHHHHHhhhhhe--Eeecccce-EEEEecCCcEEEEEEeeHHH
Confidence 23 11 233443222111 12222332 24444 79999999998753
No 23
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=86.05 E-value=1.1 Score=43.97 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=72.9
Q ss_pred ccccccCCeEEEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHh--ccCCc-eEEEeccCccceEEEEe-
Q 004736 83 DQMVEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAE--MEEVT-ELQPVLDAHVPVMKFKF- 158 (732)
Q Consensus 83 ~~~~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~--~~~V~-~l~~I~~ArVPIIKf~~- 158 (732)
.+..+..++++..-||||=|--+- .|||+++..|.. ..+.+.|.+ .+.++ ++..-.+.++-+ ++..
T Consensus 24 ~~~ik~~g~~v~iaGS~RRgket~-gDiDiLit~~~~--------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~ 93 (174)
T 1jaj_A 24 GQLIKILSKNIVAVGSLRREEKML-NDVDLLIIVPEK--------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWE 93 (174)
T ss_dssp TEEEEECTTTEEEEEHHHHTCSEE-CCEEEEEEESSH--------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESS
T ss_pred cccccCCCcEEEEeccccCCCCCC-CCEEEEEecCCH--------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCC
Confidence 444445678899999999998775 499999988741 235566777 77777 665444555333 3333
Q ss_pred -cCceeeEEeeeccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCC
Q 004736 159 -DGLSIDLLYASISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNV 237 (732)
Q Consensus 159 -~GI~iDLsfa~l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~ 237 (732)
.|+.|||.++....- .-.++-.-.+ +.| .+.++.||+++|+.=|-
T Consensus 94 ~~~~rVDl~~vp~~~f------------------------------g~ALl~fTGS-k~h---n~~lR~~A~~kG~~L~e 139 (174)
T 1jaj_A 94 KKTYQLDLFTALAEEK------------------------------PYAIFHFTGP-VSY---LIRIRAALKKKNYKLNQ 139 (174)
T ss_dssp SCCEEEEEEEEETTCH------------------------------HHHHHHHHSC-HHH---HHHHHHHHHHTTEEEET
T ss_pred CCceEEEEEEeCHHHH------------------------------HHHHHHhHCC-HHH---HHHHHHHHHHcCCCcCc
Confidence 689999998764210 1122222222 222 36778899999976666
Q ss_pred CCC
Q 004736 238 TGF 240 (732)
Q Consensus 238 ~G~ 240 (732)
+|.
T Consensus 140 ~Gl 142 (174)
T 1jaj_A 140 YGL 142 (174)
T ss_dssp TEE
T ss_pred ccc
Confidence 664
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=85.17 E-value=4 Score=43.98 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCeEEEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCc
Q 004736 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVT 141 (732)
Q Consensus 89 ~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~ 141 (732)
...++..-||||=|--+ ..|||+|+..|..... ..++..+.+.|.+.+.|+
T Consensus 175 ~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~-~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 175 PGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQE-VGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp TTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTT-TTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEccccccCCCc-cCCeEEEEecCChhhh-hhHHHHHHHHHHhCCCee
Confidence 35799999999999877 5699999998865432 368888889998877665
No 25
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=79.44 E-value=12 Score=40.64 Aligned_cols=51 Identities=22% Similarity=0.379 Sum_probs=38.2
Q ss_pred CeEEEEeccccccCCCCCCCeeEEeecCCccCcc-chHHHHHHHHHHhccCCc
Q 004736 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSRE-EDFFFILHNILAEMEEVT 141 (732)
Q Consensus 90 ~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re-~dFF~~l~~~L~~~~~V~ 141 (732)
..++..-||||=|--+ ..|||+|+..|...... ..++..+.+.|.+.+.|+
T Consensus 196 ~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 196 DALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp TCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 5799999999999877 55999999887643211 126777888888877663
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=78.09 E-value=7.1 Score=44.25 Aligned_cols=107 Identities=17% Similarity=0.089 Sum_probs=70.5
Q ss_pred CeEEEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeee
Q 004736 90 NALIFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYAS 169 (732)
Q Consensus 90 ~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~ 169 (732)
..++..-||||=|--+- .|||+++..|.. ..+.+.|.+.+.+.++....+.++-+ ++ -.|+.|||.++.
T Consensus 180 ~~~~~~~Gs~RRgke~~-gDiD~li~~~~~--------~~v~~~l~~~~~~~~~~~~g~~k~~~-~~-~~~~rvDl~~~~ 248 (575)
T 3b0x_A 180 VERAELCGSARRYKDTV-GDLDFLVASREG--------ERAVEGFVRLPQVKEVYAKGKERATV-FL-KNGLQVDLRVVP 248 (575)
T ss_dssp CCEEEECHHHHTTCSEE-SSEEEEEECSSH--------HHHHHHHHTSTTEEEEEEECSSEEEE-EE-TTSCEEEEEEEC
T ss_pred CcEEEEccccccCCCcc-CCeEEEEeCCCH--------HHHHHHHHhCcchhhHhhcCCCceEE-Ec-cCCcEEEEEEEC
Confidence 57899999999988774 599999988742 13566777778777665544544333 11 269999999886
Q ss_pred ccccccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHHHHHHHHHHHhCCCCCCCCCc
Q 004736 170 ISRLVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFL 241 (732)
Q Consensus 170 l~~~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~llr~IK~WAK~RGIysn~~G~L 241 (732)
... + .-.++-+-.. ..| .|-++.||++||+.=|-+|..
T Consensus 249 ~~~--~----------------------------~~al~~~TGs-~~~---n~~lR~~A~~~g~~l~~~gl~ 286 (575)
T 3b0x_A 249 PES--Y----------------------------GAGLQYLTGS-AAH---SIRLRALAQEKGLKLSEYGVF 286 (575)
T ss_dssp GGG--H----------------------------HHHHHHHHCC-HHH---HHHHHHHHHHTTCEEETTEEE
T ss_pred HHH--H----------------------------HHHHHHhhCC-HHH---HHHHHHHHHHcCCCcchhhcc
Confidence 321 0 1122222222 222 378889999999887777754
No 27
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=72.54 E-value=7.9 Score=42.66 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=36.7
Q ss_pred CCeEEEEeccccccCCCCCCCeeEEeecCCc-cC-------ccchHHHHHHHHHHh
Q 004736 89 ANALIFTFGSYRLGVHGPGADIDALCVGPSY-VS-------REEDFFFILHNILAE 136 (732)
Q Consensus 89 ~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~-v~-------re~dFF~~l~~~L~~ 136 (732)
.+.-|+.+|||+=|=-.++||||++++.+.. .+ ....||..+.+.+.+
T Consensus 153 ~~~aviamGk~Gr~EL~~~SDiDli~l~~~~~~~~~~~~~~~~~~~f~rla~~l~~ 208 (440)
T 1v4a_A 153 QPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIK 208 (440)
T ss_dssp CCCEEEECHHHHTTCCCSSCCEEEEEEECC--------CCSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCcCCCCCcceEEEeCCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 4688999999999999999999999997643 11 113688888876664
No 28
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=62.36 E-value=19 Score=40.43 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=42.4
Q ss_pred HhhcCCCccc--cccCCeEEEEeccccccCCCCCCCeeEEeecCCccC---------ccchHHHHHHHHHHh
Q 004736 76 TRLRGYSDQM--VEDANALIFTFGSYRLGVHGPGADIDALCVGPSYVS---------REEDFFFILHNILAE 136 (732)
Q Consensus 76 ~~~~g~~~~~--~~~~~~kI~~FGSy~lGv~~p~SDIDll~v~P~~v~---------re~dFF~~l~~~L~~ 136 (732)
+...|.+... .+..+.-|+.+|+++=+=-.++||||++++.+.... ....||..+.+.+.+
T Consensus 218 ~~~~G~p~~~~~~~~~~~aviamGklGg~EL~~~SDiDlifv~~~~~~~~t~g~~~~~~~~~f~rlaq~li~ 289 (498)
T 3k7d_A 218 VARYGKPNHLNEREGRGFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMH 289 (498)
T ss_dssp HHHHCCBGGGTTCSSCSEEEEEEHHHHTTCCCTTCCEEEEEEECCCTTCBBSSSSCCBHHHHHHHHHHHHHH
T ss_pred HHHcCCCcccccCCCCCEEEEeeccccccccCcccccceeeeecCcccccccccccchHHHHHHHHHHHHHH
Confidence 3445765211 123468999999999999999999999999864321 013688888776664
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=61.25 E-value=12 Score=35.96 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=43.4
Q ss_pred CCeEEEEeccccc---cCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCcc--ceEEEEecCcee
Q 004736 89 ANALIFTFGSYRL---GVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHV--PVMKFKFDGLSI 163 (732)
Q Consensus 89 ~~~kI~~FGSy~l---Gv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArV--PIIKf~~~GI~i 163 (732)
.+..-...|||++ |+-.+.-|||+++ .+ .=...+.++|.+. +......-++... -...+.+.|+.|
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i-~~-------~da~~~~~~L~~~-g~~~~~~~~~~~~~~~f~~~~i~~v~V 102 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQT-DE-------EGAYEIERIFSEF-VSXXVRFSSTEXICSHFGELIIDGIXV 102 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEE-CH-------HHHHHHHHHTGGG-EEEEEEEEECSSEEEEEEEEEETTEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEe-cc-------cCHHHHHHHHHHH-hhcccCCCccccccceeeEEeeCCEEE
Confidence 3567788899987 5556888999988 21 1234466777753 1122222222222 134566789999
Q ss_pred eEEee
Q 004736 164 DLLYA 168 (732)
Q Consensus 164 DLsfa 168 (732)
||...
T Consensus 103 Dlm~~ 107 (169)
T 2fcl_A 103 EIMGD 107 (169)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 99964
No 30
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=45.43 E-value=30 Score=36.00 Aligned_cols=78 Identities=21% Similarity=0.059 Sum_probs=35.8
Q ss_pred eEEEEeccccccC--CCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEecc-------Ccc-ceEEEEe-c
Q 004736 91 ALIFTFGSYRLGV--HGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLD-------AHV-PVMKFKF-D 159 (732)
Q Consensus 91 ~kI~~FGSy~lGv--~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~-------ArV-PIIKf~~-~ 159 (732)
--|+.-||+..+- .-.-||+|+++++... ..|... ...|.+...+-.++.-.+ ..- |..-+.+ +
T Consensus 24 ~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~----~~~~~~-~~wl~~fg~~l~~~~~e~~~~~~~~~~~~~~~l~lf~d 98 (294)
T 2pbe_A 24 RLVTLEGSRTNRNIPPDNFQDYDISYFVTDV----ESFKEN-DQWLEIFGKRIMMQKPEDMELFPPELGNWFSYIILFED 98 (294)
T ss_dssp EEEEEC------------CCCEEEEEEESCH----HHHHTC-SGGGGGGCCEEEEECTTSCSSSCCCSTTCEEEEEEETT
T ss_pred EEEEEecCCCCCCCCCCCcccceEEEEEcCc----hHhhhh-HHHHHHHhhHHhhccccccccCcccCCCceeEEEEecC
Confidence 3578889999855 8889999999998532 123221 112222222111121001 122 3333444 7
Q ss_pred CceeeEEeeecccc
Q 004736 160 GLSIDLLYASISRL 173 (732)
Q Consensus 160 GI~iDLsfa~l~~~ 173 (732)
|++|||.|..+...
T Consensus 99 g~rIDl~~~~~~~l 112 (294)
T 2pbe_A 99 GNKLDLTLIPIREA 112 (294)
T ss_dssp SCEEEEEEEEGGGH
T ss_pred CcEEEEEEecHHHH
Confidence 99999999987543
No 31
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=41.71 E-value=42 Score=38.02 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=58.4
Q ss_pred EEEeccccccCCCCCCCeeEEeecCCccCccchHHHHHHHHHHhccCCceEEEeccCccceEEEEecCceeeEEeeeccc
Q 004736 93 IFTFGSYRLGVHGPGADIDALCVGPSYVSREEDFFFILHNILAEMEEVTELQPVLDAHVPVMKFKFDGLSIDLLYASISR 172 (732)
Q Consensus 93 I~~FGSy~lGv~~p~SDIDll~v~P~~v~re~dFF~~l~~~L~~~~~V~~l~~I~~ArVPIIKf~~~GI~iDLsfa~l~~ 172 (732)
+..-||||=|--+- .|||+++.. . .+ . + |.+.+.|+ .-.+.++-+ ++ .|+.|||.++....
T Consensus 182 ~~~~Gs~RR~~e~~-gDiD~li~~-~---~~-~----v---l~~~~~v~---~~g~~k~~~-~~--~~~~vDl~~~~~~~ 242 (578)
T 2w9m_A 182 PAPAGDVRRGLETV-RAAELTVTG-T---PD-D----V---LARLPELT---VQGDGVLSG-DY--EGVPVEIACAPAEA 242 (578)
T ss_dssp CEECHHHHHTCSEE-SSEEEEEES-C---HH-H----H---HHHCTTCE---EC---CEEE-EE--TTEEEEEEEECTTT
T ss_pred CEEecccccCCCcc-CCEEEEEec-C---hH-H----H---HhcCccce---ecCCceEEE-EE--CCEEEEEEEECHHH
Confidence 88899999998775 499999976 2 11 1 1 66667665 222334322 23 89999999876321
Q ss_pred cccccccccccccccCCCCcccccccchhhHHHHHHHhCCCchhHHHHH-HHHHHHHHHhCCCCCCCCCc
Q 004736 173 LVVREDLDISDMSVLNDVDEPTVRSLNGCRVADQILKLVPNVEHFCTTL-RCLKFWAKRRGVYSNVTGFL 241 (732)
Q Consensus 173 ~~ipe~l~l~~d~lL~~lDe~svrSLNG~Rvtd~IlrlVP~~~~FR~ll-r~IK~WAK~RGIysn~~G~L 241 (732)
- .-.++-.- . . -. |-++.||++||+.=|-+|..
T Consensus 243 ~------------------------------~~al~~~T-G-~----~n~~~lr~~A~~~g~~l~~~gl~ 276 (578)
T 2w9m_A 243 R------------------------------GALDLLRS-G-E----HFAGQVQAAAQARGFTLTAGGLS 276 (578)
T ss_dssp H------------------------------HHHHHHTS-C-H----HHHHHHHHHHHTTTCEEETTEEE
T ss_pred H------------------------------HHHHHHHh-h-h----hHHHHHHHHHHHcCCCcChhhcc
Confidence 0 11222222 2 2 23 67889999999877777754
No 32
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=22.51 E-value=53 Score=27.95 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=23.2
Q ss_pred ccccchhhHHHH--HHHHhHHHHhhhcCchhhhhHHHhhhhhhc
Q 004736 683 VVQKPVMRHVLF--IIFGLCLCFILCTNFTLYCSFCWLFGHFYS 724 (732)
Q Consensus 683 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (732)
++.||.||.+|. +-+-+..+|++| +-|.++|-||+.-.
T Consensus 3 ~lakPqmrgLl~~~lr~~i~~a~~ls----l~~~~~~k~~v~~p 42 (73)
T 1v54_I 3 ALAKPQMRGLLARRLRFHIVGAFMVS----LGFATFYKFAVAEK 42 (73)
T ss_dssp CCCCCCCBSHHHHHHHHHHHHHHHHH----HHHHHHHHHHTHHH
T ss_pred CcCCcccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 567999988774 334444445544 34566777776543
Done!