Query 004737
Match_columns 732
No_of_seqs 963 out of 2691
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.5E-44 3.3E-49 369.5 27.2 302 422-732 132-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.9E-43 6.4E-48 360.1 26.3 289 441-732 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.5E-41 7.6E-46 349.3 24.4 283 445-732 170-458 (459)
4 KOG0286 G-protein beta subunit 100.0 9.2E-39 2E-43 318.1 34.8 291 439-732 44-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 1.2E-36 2.7E-41 304.0 28.7 288 442-730 39-334 (338)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-37 6.2E-42 320.3 22.9 258 426-691 196-458 (459)
7 cd00200 WD40 WD40 domain, foun 100.0 1.7E-34 3.8E-39 297.2 38.4 284 444-732 3-289 (289)
8 KOG0279 G protein beta subunit 100.0 8.1E-35 1.8E-39 288.5 32.9 283 442-732 7-311 (315)
9 KOG0266 WD40 repeat-containing 100.0 3E-34 6.4E-39 323.7 40.8 286 443-732 151-452 (456)
10 KOG0315 G-protein beta subunit 100.0 5.8E-35 1.3E-39 285.1 29.9 268 463-732 11-286 (311)
11 KOG0295 WD40 repeat-containing 100.0 6.1E-36 1.3E-40 305.5 23.5 288 441-732 99-404 (406)
12 KOG0315 G-protein beta subunit 100.0 4.3E-34 9.2E-39 279.1 30.8 283 422-713 15-309 (311)
13 KOG0285 Pleiotropic regulator 100.0 8.9E-35 1.9E-39 295.7 26.2 287 440-732 141-437 (460)
14 KOG0318 WD40 repeat stress pro 100.0 3.6E-33 7.7E-38 296.2 37.1 304 422-732 122-558 (603)
15 KOG0318 WD40 repeat stress pro 100.0 5.6E-33 1.2E-37 294.7 35.9 303 423-732 166-600 (603)
16 KOG0279 G protein beta subunit 100.0 1.4E-33 2.9E-38 279.9 28.6 267 422-693 33-313 (315)
17 KOG0284 Polyadenylation factor 100.0 3E-35 6.4E-40 304.0 17.0 277 450-732 96-378 (464)
18 KOG0273 Beta-transducin family 100.0 1.9E-33 4.2E-38 295.0 28.7 282 443-732 172-480 (524)
19 KOG0273 Beta-transducin family 100.0 3.8E-33 8.2E-38 292.9 30.7 275 451-732 236-521 (524)
20 KOG0282 mRNA splicing factor [ 100.0 2.1E-34 4.6E-39 303.5 19.1 290 441-732 205-503 (503)
21 KOG0293 WD40 repeat-containing 100.0 8.7E-34 1.9E-38 293.0 22.6 290 437-732 211-511 (519)
22 PLN00181 protein SPA1-RELATED; 100.0 7.5E-32 1.6E-36 324.7 41.9 284 446-732 479-791 (793)
23 KOG0645 WD40 repeat protein [G 100.0 1.3E-31 2.7E-36 264.9 33.7 283 440-732 4-309 (312)
24 KOG0296 Angio-associated migra 100.0 9.7E-32 2.1E-36 275.0 31.4 301 422-732 81-396 (399)
25 KOG0263 Transcription initiati 100.0 2E-32 4.3E-37 303.7 28.3 273 445-722 373-703 (707)
26 KOG0291 WD40-repeat-containing 100.0 1.4E-31 3E-36 293.8 34.5 288 440-732 297-610 (893)
27 KOG0319 WD40-repeat-containing 100.0 2.1E-31 4.6E-36 292.4 29.5 288 441-732 314-617 (775)
28 KOG0286 G-protein beta subunit 100.0 1.7E-30 3.8E-35 259.1 31.2 260 424-691 74-343 (343)
29 KOG0263 Transcription initiati 100.0 1.4E-31 2.9E-36 297.1 25.0 243 486-732 372-647 (707)
30 KOG0291 WD40-repeat-containing 100.0 1.4E-29 3.1E-34 278.1 39.3 281 447-732 262-548 (893)
31 KOG0319 WD40-repeat-containing 100.0 6.1E-31 1.3E-35 288.9 28.6 304 422-732 79-575 (775)
32 KOG0316 Conserved WD40 repeat- 100.0 1.2E-30 2.5E-35 253.1 26.4 281 441-731 8-296 (307)
33 KOG0306 WD40-repeat-containing 100.0 2.1E-30 4.5E-35 284.5 28.4 281 444-732 367-662 (888)
34 KOG0281 Beta-TrCP (transducin 100.0 6.5E-32 1.4E-36 273.6 14.9 266 448-732 195-475 (499)
35 KOG0295 WD40 repeat-containing 100.0 6.7E-31 1.4E-35 268.7 22.2 262 423-692 126-405 (406)
36 KOG0284 Polyadenylation factor 100.0 1.1E-31 2.4E-36 277.5 15.6 250 437-692 125-379 (464)
37 KOG0306 WD40-repeat-containing 100.0 1.1E-29 2.4E-34 278.7 31.0 303 423-731 83-577 (888)
38 KOG0276 Vesicle coat complex C 100.0 3.7E-30 8E-35 277.4 26.5 282 444-730 7-295 (794)
39 KOG0275 Conserved WD40 repeat- 100.0 3.6E-31 7.7E-36 266.0 16.5 280 448-732 211-507 (508)
40 KOG0643 Translation initiation 100.0 3.3E-29 7.1E-34 247.2 28.9 281 445-731 5-314 (327)
41 cd00200 WD40 WD40 domain, foun 100.0 1.7E-28 3.7E-33 252.5 35.5 258 426-691 30-289 (289)
42 KOG1407 WD40 repeat protein [F 100.0 2.5E-29 5.4E-34 247.4 27.4 282 444-731 14-308 (313)
43 KOG0278 Serine/threonine kinas 100.0 2.1E-30 4.6E-35 253.2 18.6 280 445-732 9-295 (334)
44 KOG0296 Angio-associated migra 100.0 3.6E-29 7.8E-34 256.2 27.8 285 442-732 56-354 (399)
45 KOG0266 WD40 repeat-containing 100.0 3.3E-29 7.1E-34 282.7 30.0 265 423-693 177-454 (456)
46 KOG0285 Pleiotropic regulator 100.0 6.1E-29 1.3E-33 253.3 24.9 291 394-694 144-440 (460)
47 KOG0645 WD40 repeat protein [G 100.0 3E-28 6.5E-33 241.0 29.0 264 423-693 33-311 (312)
48 KOG0292 Vesicle coat complex C 100.0 6.2E-29 1.3E-33 276.2 26.9 282 446-731 5-318 (1202)
49 KOG0276 Vesicle coat complex C 100.0 1.6E-28 3.4E-33 264.9 28.9 257 426-688 34-294 (794)
50 KOG0288 WD40 repeat protein Ti 100.0 9.9E-30 2.1E-34 263.6 18.0 282 443-732 168-459 (459)
51 KOG0281 Beta-TrCP (transducin 100.0 3.8E-30 8.2E-35 260.9 13.5 261 422-698 212-482 (499)
52 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-27 4.7E-32 240.2 33.2 283 441-731 5-300 (311)
53 KOG0265 U5 snRNP-specific prot 100.0 4.6E-28 1E-32 242.7 28.0 291 390-692 36-337 (338)
54 KOG0640 mRNA cleavage stimulat 100.0 1E-28 2.2E-33 247.5 22.5 287 442-732 104-424 (430)
55 KOG0313 Microtubule binding pr 100.0 9.7E-28 2.1E-32 246.7 27.0 278 448-732 103-416 (423)
56 KOG0283 WD40 repeat-containing 100.0 3.9E-28 8.5E-33 271.8 26.1 246 442-693 258-576 (712)
57 KOG0277 Peroxisomal targeting 100.0 4E-28 8.7E-33 238.0 22.5 276 454-732 12-307 (311)
58 PTZ00420 coronin; Provisional 100.0 1.5E-26 3.2E-31 262.7 37.9 250 468-717 50-319 (568)
59 KOG0772 Uncharacterized conser 100.0 5.4E-28 1.2E-32 256.0 24.1 288 442-731 159-484 (641)
60 KOG0274 Cdc4 and related F-box 100.0 3.7E-27 7.9E-32 266.8 30.8 270 448-732 206-480 (537)
61 PLN00181 protein SPA1-RELATED; 100.0 3.2E-26 6.9E-31 276.0 38.7 266 423-692 501-792 (793)
62 KOG0282 mRNA splicing factor [ 100.0 1.3E-28 2.7E-33 260.0 15.5 247 483-732 205-460 (503)
63 KOG0316 Conserved WD40 repeat- 100.0 2.8E-27 6E-32 229.8 23.3 258 422-690 34-296 (307)
64 PTZ00421 coronin; Provisional 100.0 4.2E-26 9.1E-31 257.6 36.3 265 450-716 20-315 (493)
65 KOG0268 Sof1-like rRNA process 100.0 2.2E-28 4.8E-33 249.9 15.7 279 443-732 59-343 (433)
66 KOG0310 Conserved WD40 repeat- 100.0 5.2E-27 1.1E-31 248.3 26.3 277 449-730 25-305 (487)
67 KOG0973 Histone transcription 100.0 9.7E-27 2.1E-31 266.3 29.8 281 447-731 10-352 (942)
68 KOG0278 Serine/threonine kinas 100.0 4.8E-28 1E-32 236.7 15.3 250 442-698 51-302 (334)
69 KOG0293 WD40 repeat-containing 100.0 3.4E-27 7.5E-32 244.3 22.5 267 422-694 241-514 (519)
70 KOG0289 mRNA splicing factor [ 100.0 1.4E-26 2.9E-31 241.5 26.6 276 451-731 220-503 (506)
71 KOG0313 Microtubule binding pr 100.0 1.5E-26 3.3E-31 237.9 26.6 262 423-693 121-418 (423)
72 KOG0292 Vesicle coat complex C 100.0 1.7E-26 3.6E-31 256.9 28.8 259 426-693 30-321 (1202)
73 KOG0305 Anaphase promoting com 100.0 2.3E-26 5E-31 252.0 28.7 268 455-732 182-459 (484)
74 KOG0283 WD40 repeat-containing 100.0 8.6E-27 1.9E-31 261.1 25.1 246 484-732 258-574 (712)
75 KOG0647 mRNA export protein (c 100.0 4E-26 8.7E-31 228.9 26.4 270 448-722 25-311 (347)
76 KOG0300 WD40 repeat-containing 99.9 2.3E-26 5E-31 231.0 22.8 289 439-732 137-474 (481)
77 KOG0274 Cdc4 and related F-box 99.9 1.1E-25 2.3E-30 254.9 29.8 260 422-698 223-487 (537)
78 KOG0308 Conserved WD40 repeat- 99.9 8.6E-27 1.9E-31 253.0 18.8 270 460-732 35-325 (735)
79 KOG0310 Conserved WD40 repeat- 99.9 6.4E-26 1.4E-30 240.1 24.6 243 445-693 63-309 (487)
80 KOG1407 WD40 repeat protein [F 99.9 4.1E-26 8.9E-31 224.8 21.4 241 486-730 14-257 (313)
81 KOG0288 WD40 repeat protein Ti 99.9 1.3E-26 2.7E-31 240.6 17.8 259 423-690 193-458 (459)
82 KOG0277 Peroxisomal targeting 99.9 8.9E-26 1.9E-30 221.6 21.2 256 432-692 43-308 (311)
83 PTZ00421 coronin; Provisional 99.9 2.6E-24 5.7E-29 243.0 35.7 227 444-675 69-315 (493)
84 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.3E-24 1.8E-28 223.4 36.3 264 462-732 1-277 (300)
85 KOG0294 WD40 repeat-containing 99.9 7.1E-25 1.5E-29 221.1 26.1 267 438-713 31-306 (362)
86 KOG2096 WD40 repeat protein [G 99.9 8.4E-25 1.8E-29 220.4 26.2 285 443-731 79-399 (420)
87 KOG1539 WD repeat protein [Gen 99.9 6.1E-24 1.3E-28 236.4 35.6 304 424-731 179-645 (910)
88 KOG0641 WD40 repeat protein [G 99.9 1.9E-23 4.1E-28 201.6 33.5 289 439-731 22-346 (350)
89 KOG0301 Phospholipase A2-activ 99.9 8.9E-25 1.9E-29 239.1 27.4 274 442-731 6-285 (745)
90 KOG1408 WD40 repeat protein [F 99.9 1.3E-24 2.8E-29 237.0 26.9 307 425-732 344-711 (1080)
91 KOG0973 Histone transcription 99.9 1.2E-24 2.6E-29 249.3 27.6 252 441-696 60-358 (942)
92 KOG0275 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 226.6 16.3 275 400-691 224-507 (508)
93 KOG1036 Mitotic spindle checkp 99.9 3E-24 6.5E-29 216.5 26.6 269 449-724 12-294 (323)
94 PTZ00420 coronin; Provisional 99.9 1.7E-23 3.7E-28 237.8 35.1 245 423-675 50-318 (568)
95 KOG0294 WD40 repeat-containing 99.9 4.7E-24 1E-28 215.2 26.1 259 465-732 4-279 (362)
96 KOG0299 U3 snoRNP-associated p 99.9 5E-24 1.1E-28 224.2 26.4 273 443-722 135-443 (479)
97 KOG0305 Anaphase promoting com 99.9 5.2E-24 1.1E-28 233.6 27.6 259 427-695 197-463 (484)
98 KOG0308 Conserved WD40 repeat- 99.9 6.5E-25 1.4E-29 238.5 19.4 307 422-732 42-391 (735)
99 KOG0299 U3 snoRNP-associated p 99.9 3.1E-24 6.8E-29 225.7 23.6 240 447-690 199-453 (479)
100 KOG1273 WD40 repeat protein [G 99.9 5.8E-24 1.3E-28 214.2 24.4 277 453-732 26-320 (405)
101 KOG0641 WD40 repeat protein [G 99.9 9.6E-23 2.1E-27 196.8 31.5 290 396-693 39-349 (350)
102 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3E-22 6.5E-27 211.4 38.2 280 424-714 8-300 (300)
103 KOG0643 Translation initiation 99.9 1.8E-23 4E-28 206.6 25.6 233 487-723 5-250 (327)
104 KOG2055 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 221.4 25.1 283 449-732 212-510 (514)
105 KOG0639 Transducin-like enhanc 99.9 2.7E-24 5.9E-29 227.0 20.0 278 447-731 416-701 (705)
106 KOG0647 mRNA export protein (c 99.9 4.2E-23 9.1E-28 207.3 26.7 277 368-684 21-314 (347)
107 KOG1332 Vesicle coat complex C 99.9 6.6E-24 1.4E-28 207.5 18.4 248 446-693 7-286 (299)
108 KOG0301 Phospholipase A2-activ 99.9 3.5E-23 7.6E-28 226.7 25.3 256 422-694 30-289 (745)
109 KOG1446 Histone H3 (Lys4) meth 99.9 3.8E-22 8.3E-27 202.2 30.1 247 482-732 4-260 (311)
110 KOG2106 Uncharacterized conser 99.9 3.2E-21 6.8E-26 204.5 36.8 258 426-691 221-519 (626)
111 KOG0269 WD40 repeat-containing 99.9 1.1E-23 2.5E-28 232.8 18.9 275 452-729 41-335 (839)
112 KOG0289 mRNA splicing factor [ 99.9 1.5E-22 3.2E-27 211.5 24.9 249 442-692 253-505 (506)
113 KOG4283 Transcription-coupled 99.9 2.5E-22 5.4E-27 200.7 25.4 283 445-731 38-362 (397)
114 KOG0268 Sof1-like rRNA process 99.9 1.1E-23 2.4E-28 215.7 16.1 263 422-696 84-348 (433)
115 KOG0650 WD40 repeat nucleolar 99.9 1E-22 2.3E-27 219.4 23.6 289 438-731 388-732 (733)
116 KOG0640 mRNA cleavage stimulat 99.9 5.4E-23 1.2E-27 206.6 19.9 288 401-692 124-425 (430)
117 KOG0646 WD40 repeat protein [G 99.9 6E-23 1.3E-27 216.5 20.8 247 428-680 62-336 (476)
118 KOG1332 Vesicle coat complex C 99.9 5.7E-23 1.2E-27 201.0 17.4 243 489-732 8-284 (299)
119 KOG0264 Nucleosome remodeling 99.9 2.1E-22 4.5E-27 212.3 22.8 252 443-694 117-405 (422)
120 KOG0772 Uncharacterized conser 99.9 2.9E-22 6.2E-27 212.9 23.2 240 448-691 212-485 (641)
121 KOG0264 Nucleosome remodeling 99.9 2.7E-22 5.9E-27 211.4 22.7 242 489-732 121-402 (422)
122 KOG2106 Uncharacterized conser 99.9 2.4E-20 5.1E-25 198.0 36.4 295 422-732 175-519 (626)
123 KOG1274 WD40 repeat protein [G 99.9 1.7E-21 3.7E-26 219.4 29.2 276 447-730 10-296 (933)
124 KOG0639 Transducin-like enhanc 99.9 4.9E-22 1.1E-26 210.1 23.3 263 423-692 436-703 (705)
125 KOG0321 WD40 repeat-containing 99.9 2.6E-22 5.7E-27 218.0 21.8 277 455-732 54-389 (720)
126 KOG1063 RNA polymerase II elon 99.9 3.4E-21 7.4E-26 211.1 30.2 284 445-732 262-646 (764)
127 KOG2445 Nuclear pore complex c 99.9 2E-21 4.4E-26 195.6 26.0 258 446-732 9-316 (361)
128 KOG1408 WD40 repeat protein [F 99.9 4.2E-22 9.1E-27 217.6 22.7 243 450-695 459-715 (1080)
129 KOG0267 Microtubule severing p 99.9 1.5E-23 3.2E-28 230.3 10.2 254 462-726 4-260 (825)
130 KOG1539 WD repeat protein [Gen 99.9 1.1E-20 2.4E-25 210.6 32.8 305 425-732 132-604 (910)
131 KOG2048 WD40 repeat protein [G 99.9 2E-20 4.3E-25 205.0 33.0 280 442-730 17-315 (691)
132 KOG0267 Microtubule severing p 99.9 2.4E-23 5.2E-28 228.6 9.1 237 444-685 22-260 (825)
133 KOG1063 RNA polymerase II elon 99.9 8.9E-21 1.9E-25 207.8 27.5 357 369-732 281-761 (764)
134 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.2E-25 213.1 26.8 241 489-732 10-260 (933)
135 KOG0300 WD40 repeat-containing 99.9 4.6E-21 9.9E-26 193.0 20.6 245 483-732 139-426 (481)
136 KOG1036 Mitotic spindle checkp 99.9 1.9E-20 4.1E-25 189.1 24.5 234 491-732 12-260 (323)
137 KOG0646 WD40 repeat protein [G 99.9 1.8E-20 3.8E-25 198.0 24.4 258 468-732 13-305 (476)
138 KOG4378 Nuclear protein COP1 [ 99.9 9.2E-21 2E-25 200.4 21.7 282 428-716 13-305 (673)
139 KOG1034 Transcriptional repres 99.9 2.7E-20 5.8E-25 189.0 22.2 285 444-732 32-381 (385)
140 KOG4283 Transcription-coupled 99.9 2.8E-20 6E-25 186.2 21.6 207 490-696 41-279 (397)
141 KOG4328 WD40 protein [Function 99.9 5.8E-20 1.3E-24 193.5 24.6 292 439-731 175-492 (498)
142 KOG2055 WD40 repeat protein [G 99.9 2.5E-20 5.5E-25 196.3 21.9 269 402-693 226-512 (514)
143 KOG0269 WD40 repeat-containing 99.9 3.2E-21 6.9E-26 213.6 15.5 226 424-650 107-342 (839)
144 KOG1538 Uncharacterized conser 99.9 4.6E-20 9.9E-25 200.3 23.5 270 452-732 14-291 (1081)
145 KOG2048 WD40 repeat protein [G 99.9 1.1E-18 2.4E-23 191.4 33.3 258 426-690 46-316 (691)
146 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-17 2.4E-22 180.3 40.7 300 423-732 130-440 (466)
147 KOG0270 WD40 repeat-containing 99.9 1.2E-19 2.7E-24 190.6 24.3 243 454-698 177-454 (463)
148 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-17 3E-22 179.6 39.4 284 445-732 60-357 (466)
149 KOG4378 Nuclear protein COP1 [ 99.8 1.7E-19 3.6E-24 191.0 23.1 248 422-675 52-305 (673)
150 KOG0302 Ribosome Assembly prot 99.8 1.4E-19 3.1E-24 186.5 21.2 243 447-690 148-435 (440)
151 KOG0307 Vesicle coat complex C 99.8 8.6E-21 1.9E-25 218.6 13.2 274 455-731 11-324 (1049)
152 KOG1445 Tumor-specific antigen 99.8 1.9E-19 4.2E-24 194.7 21.8 131 434-566 63-200 (1012)
153 KOG2919 Guanine nucleotide-bin 99.8 4.3E-19 9.4E-24 179.8 23.0 269 452-725 51-361 (406)
154 KOG0321 WD40 repeat-containing 99.8 2.2E-19 4.8E-24 195.4 22.0 250 443-695 93-393 (720)
155 KOG1009 Chromatin assembly com 99.8 7.8E-19 1.7E-23 182.8 25.1 278 450-730 13-368 (434)
156 KOG4328 WD40 protein [Function 99.8 1.7E-19 3.6E-24 190.1 20.3 256 477-732 171-448 (498)
157 KOG0307 Vesicle coat complex C 99.8 4.6E-20 9.9E-25 212.7 16.5 243 451-696 65-330 (1049)
158 KOG2096 WD40 repeat protein [G 99.8 7.2E-19 1.6E-23 177.8 22.0 242 487-731 81-357 (420)
159 KOG0302 Ribosome Assembly prot 99.8 6.5E-19 1.4E-23 181.7 21.7 241 489-731 148-435 (440)
160 KOG0270 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 183.0 23.8 270 456-732 131-447 (463)
161 PRK11028 6-phosphogluconolacto 99.8 7.9E-17 1.7E-21 174.7 36.2 285 424-712 9-327 (330)
162 KOG0650 WD40 repeat nucleolar 99.8 1.6E-18 3.5E-23 187.3 21.7 242 485-731 393-677 (733)
163 KOG1273 WD40 repeat protein [G 99.8 3.7E-18 7.9E-23 172.5 22.9 233 495-732 26-278 (405)
164 PRK11028 6-phosphogluconolacto 99.8 5.6E-17 1.2E-21 175.9 32.5 265 466-732 6-302 (330)
165 KOG0644 Uncharacterized conser 99.8 1.3E-19 2.8E-24 201.4 9.4 274 442-731 182-465 (1113)
166 KOG0642 Cell-cycle nuclear pro 99.8 1.7E-18 3.6E-23 186.8 16.9 256 444-704 288-573 (577)
167 KOG0322 G-protein beta subunit 99.8 1.7E-18 3.6E-23 171.5 15.1 285 442-732 6-321 (323)
168 KOG4227 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 173.1 21.2 283 444-732 50-385 (609)
169 KOG0303 Actin-binding protein 99.8 2.5E-17 5.5E-22 170.8 23.8 228 488-716 77-321 (472)
170 KOG1188 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 172.7 18.3 266 463-732 41-344 (376)
171 KOG1009 Chromatin assembly com 99.8 4E-17 8.7E-22 170.2 24.0 254 439-696 54-375 (434)
172 KOG1517 Guanine nucleotide bin 99.8 7.7E-17 1.7E-21 183.5 26.6 280 450-732 1064-1379(1387)
173 KOG1007 WD repeat protein TSSC 99.8 4.3E-17 9.4E-22 163.2 20.9 292 422-730 35-357 (370)
174 KOG1034 Transcriptional repres 99.8 9.7E-17 2.1E-21 163.3 23.3 242 448-693 87-383 (385)
175 KOG1445 Tumor-specific antigen 99.8 3E-16 6.4E-21 170.2 26.3 133 591-726 642-786 (1012)
176 KOG1310 WD40 repeat protein [G 99.8 5.2E-17 1.1E-21 174.0 20.2 207 443-649 43-304 (758)
177 KOG0303 Actin-binding protein 99.7 8.4E-17 1.8E-21 167.0 20.3 211 436-651 67-297 (472)
178 KOG1240 Protein kinase contain 99.7 2.5E-16 5.5E-21 182.0 25.8 291 442-732 1040-1431(1431)
179 KOG0290 Conserved WD40 repeat- 99.7 2.8E-16 6.2E-21 157.5 22.5 241 447-690 93-362 (364)
180 KOG2445 Nuclear pore complex c 99.7 9.7E-16 2.1E-20 154.9 26.3 259 398-661 10-331 (361)
181 KOG1334 WD40 repeat protein [G 99.7 1.5E-17 3.2E-22 176.6 13.3 290 442-731 134-463 (559)
182 KOG1587 Cytoplasmic dynein int 99.7 7.5E-16 1.6E-20 173.9 27.8 258 472-732 222-514 (555)
183 KOG2919 Guanine nucleotide-bin 99.7 5.7E-16 1.2E-20 157.3 23.4 231 451-684 105-361 (406)
184 KOG1188 WD40 repeat protein [G 99.7 1.9E-16 4.2E-21 162.0 17.6 265 426-693 49-346 (376)
185 KOG1963 WD40 repeat protein [G 99.7 2.8E-15 6E-20 169.6 28.5 282 447-732 202-536 (792)
186 KOG1587 Cytoplasmic dynein int 99.7 9.3E-16 2E-20 173.2 24.5 264 428-695 223-518 (555)
187 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 171.0 25.8 233 471-715 183-426 (429)
188 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 148.3 22.9 229 494-731 12-271 (325)
189 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.6E-21 172.6 15.6 234 426-662 315-572 (577)
190 PRK01742 tolB translocation pr 99.7 9.7E-16 2.1E-20 172.3 23.5 235 425-674 182-426 (429)
191 KOG0649 WD40 repeat protein [G 99.7 9.2E-15 2E-19 143.5 25.9 268 452-731 12-313 (325)
192 KOG1524 WD40 repeat-containing 99.7 8.4E-16 1.8E-20 164.4 19.1 262 448-730 12-282 (737)
193 KOG1538 Uncharacterized conser 99.7 1.7E-15 3.6E-20 165.3 21.1 250 429-693 35-293 (1081)
194 KOG2110 Uncharacterized conser 99.7 6.1E-14 1.3E-18 145.3 30.6 233 450-694 5-249 (391)
195 PRK03629 tolB translocation pr 99.7 2.5E-14 5.4E-19 160.7 30.1 235 472-715 179-428 (429)
196 KOG4497 Uncharacterized conser 99.7 2.3E-14 4.9E-19 146.0 26.0 271 451-727 49-425 (447)
197 KOG0290 Conserved WD40 repeat- 99.7 8.7E-15 1.9E-19 147.0 20.9 247 483-732 36-316 (364)
198 KOG1272 WD40-repeat-containing 99.7 3.4E-16 7.4E-21 165.4 11.3 262 453-726 132-401 (545)
199 PF02239 Cytochrom_D1: Cytochr 99.7 2.3E-13 4.9E-18 149.3 33.5 297 427-732 16-345 (369)
200 KOG2139 WD40 repeat protein [G 99.7 4.3E-14 9.4E-19 145.7 25.4 277 450-730 98-427 (445)
201 KOG2321 WD40 repeat protein [G 99.6 2.3E-14 5E-19 155.0 24.2 277 448-731 49-340 (703)
202 KOG1517 Guanine nucleotide bin 99.6 1.1E-14 2.5E-19 166.1 22.0 269 426-695 1085-1383(1387)
203 PRK04922 tolB translocation pr 99.6 4.7E-14 1E-18 158.9 27.1 234 472-714 184-432 (433)
204 PRK05137 tolB translocation pr 99.6 1E-13 2.2E-18 156.2 29.9 234 472-715 182-433 (435)
205 KOG2110 Uncharacterized conser 99.6 8.9E-14 1.9E-18 144.1 26.6 230 492-732 5-246 (391)
206 KOG1963 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 158.4 28.1 274 454-731 20-319 (792)
207 KOG0771 Prolactin regulatory e 99.6 2.8E-15 6.2E-20 157.6 15.8 195 454-649 148-355 (398)
208 KOG1523 Actin-related protein 99.6 3.2E-14 6.9E-19 144.8 22.6 226 446-674 6-260 (361)
209 KOG1007 WD repeat protein TSSC 99.6 8.1E-15 1.8E-19 147.0 17.0 208 440-649 112-362 (370)
210 KOG4227 WD40 repeat protein [G 99.6 3.8E-14 8.2E-19 146.8 20.0 244 487-732 51-320 (609)
211 KOG0644 Uncharacterized conser 99.6 1.4E-15 3E-20 169.8 9.7 278 397-697 186-472 (1113)
212 PRK02889 tolB translocation pr 99.6 2.4E-13 5.2E-18 152.8 27.7 235 472-715 176-425 (427)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 4.1E-14 8.9E-19 152.1 20.2 245 452-714 125-384 (636)
214 PRK04922 tolB translocation pr 99.6 2.3E-13 5.1E-18 153.2 27.5 234 427-673 184-432 (433)
215 KOG2111 Uncharacterized conser 99.6 2.1E-12 4.6E-17 131.7 30.3 233 452-694 7-257 (346)
216 PRK03629 tolB translocation pr 99.6 4.6E-13 1E-17 150.5 28.4 235 427-674 179-428 (429)
217 KOG1524 WD40 repeat-containing 99.6 2.7E-14 5.9E-19 153.0 16.7 206 463-689 76-282 (737)
218 KOG1523 Actin-related protein 99.6 2.2E-13 4.9E-18 138.7 22.0 225 491-716 9-261 (361)
219 PF10282 Lactonase: Lactonase, 99.6 3.4E-11 7.4E-16 131.6 40.9 273 439-712 26-345 (345)
220 KOG2315 Predicted translation 99.6 1.3E-12 2.8E-17 141.8 28.3 268 451-732 35-388 (566)
221 KOG3881 Uncharacterized conser 99.6 2.4E-13 5.2E-18 141.8 21.1 262 448-715 53-342 (412)
222 KOG0771 Prolactin regulatory e 99.6 2.9E-13 6.2E-18 142.6 21.9 191 539-731 148-351 (398)
223 PRK05137 tolB translocation pr 99.6 1.1E-12 2.5E-17 147.8 28.5 233 427-673 182-432 (435)
224 PRK02889 tolB translocation pr 99.6 8.2E-13 1.8E-17 148.5 26.7 223 445-674 190-425 (427)
225 TIGR02800 propeller_TolB tol-p 99.6 1.8E-12 3.8E-17 145.1 28.5 232 472-712 170-416 (417)
226 KOG1354 Serine/threonine prote 99.6 5.3E-13 1.1E-17 136.9 21.8 277 450-731 25-431 (433)
227 PF10282 Lactonase: Lactonase, 99.5 6.7E-11 1.4E-15 129.3 38.6 267 465-732 2-320 (345)
228 KOG1272 WD40-repeat-containing 99.5 1.5E-14 3.3E-19 153.1 8.7 228 494-732 131-360 (545)
229 PRK00178 tolB translocation pr 99.5 6E-12 1.3E-16 141.7 29.8 234 473-715 180-428 (430)
230 KOG2111 Uncharacterized conser 99.5 4.7E-12 1E-16 129.2 25.3 230 495-731 8-253 (346)
231 KOG1240 Protein kinase contain 99.5 1.6E-12 3.5E-17 151.1 24.3 251 477-732 1034-1332(1431)
232 KOG3881 Uncharacterized conser 99.5 1.3E-12 2.9E-17 136.3 21.2 236 492-732 55-318 (412)
233 PF02239 Cytochrom_D1: Cytochr 99.5 2.4E-11 5.2E-16 133.4 31.7 264 463-732 6-300 (369)
234 KOG2139 WD40 repeat protein [G 99.5 2.2E-12 4.9E-17 133.2 21.5 229 493-726 99-367 (445)
235 KOG2394 WD40 protein DMR-N9 [G 99.5 1.5E-12 3.3E-17 140.2 21.0 169 460-629 183-384 (636)
236 PRK04792 tolB translocation pr 99.5 9E-12 2E-16 140.8 27.5 233 473-714 199-446 (448)
237 KOG0322 G-protein beta subunit 99.5 5.4E-13 1.2E-17 132.7 15.1 273 404-692 17-322 (323)
238 KOG1409 Uncharacterized conser 99.5 2.1E-12 4.5E-17 132.8 19.5 251 439-694 13-271 (404)
239 KOG1310 WD40 repeat protein [G 99.5 2.5E-13 5.4E-18 146.1 13.0 216 483-698 41-308 (758)
240 PRK00178 tolB translocation pr 99.5 2.8E-11 6.1E-16 136.2 29.7 222 444-674 192-428 (430)
241 KOG2321 WD40 repeat protein [G 99.4 7.6E-12 1.6E-16 135.7 21.6 238 490-732 49-300 (703)
242 KOG4497 Uncharacterized conser 99.4 7.3E-13 1.6E-17 135.1 11.9 219 497-731 13-237 (447)
243 KOG1334 WD40 repeat protein [G 99.4 1.2E-12 2.6E-17 139.6 13.5 268 422-694 159-467 (559)
244 PRK04792 tolB translocation pr 99.4 6.4E-11 1.4E-15 133.9 27.4 220 445-673 212-446 (448)
245 COG5354 Uncharacterized protei 99.4 1.5E-10 3.3E-15 124.5 28.1 273 451-732 72-393 (561)
246 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 130.1 29.2 238 472-716 165-426 (428)
247 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.3E-09 2.9E-14 117.6 34.6 256 472-732 27-328 (352)
248 TIGR02800 propeller_TolB tol-p 99.4 1.2E-10 2.5E-15 130.5 27.3 205 514-726 170-386 (417)
249 PRK01029 tolB translocation pr 99.4 1.5E-10 3.2E-15 130.0 27.5 215 514-732 165-401 (428)
250 COG2706 3-carboxymuconate cycl 99.4 3.5E-09 7.6E-14 110.7 35.1 268 446-713 35-345 (346)
251 PF08662 eIF2A: Eukaryotic tra 99.4 3.9E-11 8.5E-16 120.1 20.2 146 580-732 8-177 (194)
252 PF08662 eIF2A: Eukaryotic tra 99.4 5.7E-11 1.2E-15 119.0 21.1 154 455-614 10-185 (194)
253 KOG0974 WD-repeat protein WDR6 99.4 1.8E-11 4E-16 141.1 18.8 267 450-732 7-286 (967)
254 KOG4547 WD40 repeat-containing 99.3 2.6E-10 5.5E-15 125.1 24.6 187 460-649 3-221 (541)
255 COG2706 3-carboxymuconate cycl 99.3 5E-09 1.1E-13 109.5 32.4 261 471-731 15-318 (346)
256 KOG2315 Predicted translation 99.3 5.9E-10 1.3E-14 121.4 25.6 273 426-714 104-410 (566)
257 KOG4190 Uncharacterized conser 99.3 2.9E-11 6.2E-16 130.1 12.6 280 442-730 727-1032(1034)
258 KOG2041 WD40 repeat protein [G 99.3 6.3E-10 1.4E-14 123.2 23.2 273 450-730 14-333 (1189)
259 KOG2314 Translation initiation 99.3 8.3E-10 1.8E-14 119.7 23.4 272 449-727 249-560 (698)
260 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.8E-08 8.3E-13 106.4 36.3 259 427-700 27-337 (352)
261 TIGR03300 assembly_YfgL outer 99.2 1.2E-08 2.5E-13 112.9 32.4 252 461-732 104-377 (377)
262 KOG0309 Conserved WD40 repeat- 99.2 1E-10 2.3E-15 129.8 13.7 278 451-731 25-336 (1081)
263 COG5354 Uncharacterized protei 99.2 4.5E-09 9.7E-14 113.4 24.1 271 449-732 31-346 (561)
264 PRK04043 tolB translocation pr 99.2 2.1E-08 4.6E-13 112.1 30.3 227 472-710 169-417 (419)
265 KOG4547 WD40 repeat-containing 99.2 3E-09 6.6E-14 116.8 22.7 188 502-694 3-221 (541)
266 KOG0280 Uncharacterized conser 99.2 6E-10 1.3E-14 112.9 15.4 198 453-650 124-335 (339)
267 COG5170 CDC55 Serine/threonine 99.2 1.1E-09 2.4E-14 111.4 16.6 239 450-692 26-366 (460)
268 PF04762 IKI3: IKI3 family; I 99.1 5.8E-08 1.3E-12 117.9 34.4 281 448-732 73-454 (928)
269 COG4946 Uncharacterized protei 99.1 4.3E-08 9.3E-13 104.9 28.9 282 428-723 205-507 (668)
270 TIGR03300 assembly_YfgL outer 99.1 5.7E-08 1.2E-12 107.4 31.2 255 461-732 64-336 (377)
271 PLN02919 haloacid dehalogenase 99.1 5.1E-08 1.1E-12 120.4 33.6 241 454-697 571-892 (1057)
272 PLN02919 haloacid dehalogenase 99.1 4.5E-08 9.8E-13 120.8 32.6 232 496-732 571-886 (1057)
273 KOG0280 Uncharacterized conser 99.1 7.1E-09 1.5E-13 105.2 20.2 242 450-692 69-332 (339)
274 KOG0974 WD-repeat protein WDR6 99.1 4E-09 8.7E-14 122.1 20.6 197 449-650 86-290 (967)
275 KOG2314 Translation initiation 99.1 2.9E-08 6.3E-13 108.0 25.5 271 453-732 213-523 (698)
276 KOG1354 Serine/threonine prote 99.1 3.7E-09 8E-14 109.1 16.9 228 492-732 25-299 (433)
277 PRK04043 tolB translocation pr 99.1 6.7E-08 1.4E-12 108.2 28.6 201 514-725 169-388 (419)
278 COG4946 Uncharacterized protei 99.1 1.2E-07 2.6E-12 101.5 28.3 171 461-638 331-507 (668)
279 KOG1064 RAVE (regulator of V-A 99.1 7.4E-10 1.6E-14 133.0 12.8 189 446-650 2204-2400(2439)
280 KOG1912 WD40 repeat protein [G 99.0 7.5E-08 1.6E-12 108.2 25.5 209 440-649 45-305 (1062)
281 PF08450 SGL: SMP-30/Gluconola 99.0 7.8E-07 1.7E-11 92.4 32.0 217 496-722 3-243 (246)
282 KOG1064 RAVE (regulator of V-A 99.0 1.1E-09 2.4E-14 131.5 11.6 210 504-732 2180-2396(2439)
283 KOG1409 Uncharacterized conser 99.0 7E-09 1.5E-13 107.2 15.7 245 483-732 15-268 (404)
284 KOG4532 WD40-like repeat conta 99.0 5.7E-08 1.2E-12 97.5 20.7 250 470-725 50-323 (344)
285 PF08450 SGL: SMP-30/Gluconola 99.0 2.2E-06 4.7E-11 89.0 33.9 217 455-682 4-244 (246)
286 KOG1912 WD40 repeat protein [G 98.9 5.7E-08 1.2E-12 109.2 19.9 238 451-694 16-305 (1062)
287 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.6E-11 89.8 27.8 215 471-698 2-235 (238)
288 KOG0309 Conserved WD40 repeat- 98.9 8.6E-09 1.9E-13 114.9 11.0 219 431-649 95-340 (1081)
289 KOG2041 WD40 repeat protein [G 98.9 4.8E-07 1E-11 100.9 23.9 305 402-729 27-403 (1189)
290 PRK11138 outer membrane biogen 98.8 2.7E-06 5.8E-11 94.8 29.7 255 461-732 119-392 (394)
291 KOG4190 Uncharacterized conser 98.8 1E-08 2.3E-13 110.7 9.8 207 485-698 728-953 (1034)
292 PF04762 IKI3: IKI3 family; I 98.8 1.1E-05 2.5E-10 98.2 36.1 265 425-694 235-565 (928)
293 KOG0882 Cyclophilin-related pe 98.8 5.3E-08 1.2E-12 103.7 13.4 251 449-702 8-314 (558)
294 KOG1832 HIV-1 Vpr-binding prot 98.8 3.8E-09 8.3E-14 119.4 5.1 265 439-723 1090-1378(1516)
295 KOG3914 WD repeat protein WDR4 98.8 4.3E-08 9.2E-13 103.5 12.6 124 450-576 110-233 (390)
296 PF13360 PQQ_2: PQQ-like domai 98.7 4.3E-06 9.4E-11 85.7 25.7 211 513-732 2-228 (238)
297 COG5170 CDC55 Serine/threonine 98.7 1.2E-07 2.6E-12 96.8 12.4 234 491-732 25-307 (460)
298 PF15492 Nbas_N: Neuroblastoma 98.7 5.6E-06 1.2E-10 84.7 24.2 227 456-698 3-264 (282)
299 PRK11138 outer membrane biogen 98.7 4.7E-06 1E-10 92.9 25.7 253 462-732 69-351 (394)
300 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.1E-05 2.4E-10 88.6 27.7 259 459-723 1-346 (353)
301 PF07433 DUF1513: Protein of u 98.7 4.3E-05 9.2E-10 80.4 29.6 230 453-689 7-281 (305)
302 KOG4714 Nucleoporin [Nuclear s 98.6 4.4E-07 9.6E-12 90.9 13.3 179 427-608 68-255 (319)
303 KOG1645 RING-finger-containing 98.6 1.7E-06 3.7E-11 91.5 18.2 251 474-732 175-459 (463)
304 KOG1645 RING-finger-containing 98.6 1.2E-06 2.6E-11 92.6 16.7 244 442-693 185-461 (463)
305 KOG3914 WD repeat protein WDR4 98.6 1.1E-06 2.4E-11 93.1 16.2 157 495-652 65-227 (390)
306 KOG0882 Cyclophilin-related pe 98.6 8E-07 1.7E-11 94.9 14.6 209 440-650 43-307 (558)
307 KOG1920 IkappaB kinase complex 98.6 1.2E-05 2.6E-10 95.3 25.3 244 450-698 68-327 (1265)
308 KOG4532 WD40-like repeat conta 98.6 1.3E-05 2.8E-10 81.0 21.8 186 464-650 130-333 (344)
309 KOG1832 HIV-1 Vpr-binding prot 98.5 3.7E-08 8E-13 111.7 3.3 200 482-698 1091-1296(1516)
310 PF04053 Coatomer_WDAD: Coatom 98.5 1.4E-05 3.1E-10 89.5 23.9 222 490-731 30-259 (443)
311 KOG4714 Nucleoporin [Nuclear s 98.5 1.3E-06 2.9E-11 87.5 13.4 194 453-649 39-255 (319)
312 PRK02888 nitrous-oxide reducta 98.5 2.8E-05 6.1E-10 88.6 25.2 179 543-723 200-450 (635)
313 PF15492 Nbas_N: Neuroblastoma 98.5 4.5E-05 9.8E-10 78.2 24.1 187 453-650 46-261 (282)
314 PF02897 Peptidase_S9_N: Proly 98.5 0.00038 8.1E-09 78.1 34.0 243 453-700 126-411 (414)
315 PF07433 DUF1513: Protein of u 98.5 0.00017 3.8E-09 75.9 28.1 225 495-724 7-276 (305)
316 COG3391 Uncharacterized conser 98.5 0.00027 5.7E-09 78.5 31.2 251 474-730 13-279 (381)
317 KOG1275 PAB-dependent poly(A) 98.4 3.9E-06 8.5E-11 96.4 16.1 181 461-647 146-341 (1118)
318 KOG1275 PAB-dependent poly(A) 98.4 9.4E-06 2E-10 93.4 18.1 175 550-732 149-340 (1118)
319 cd00216 PQQ_DH Dehydrogenases 98.4 0.00017 3.7E-09 82.7 28.0 256 462-732 61-422 (488)
320 KOG2695 WD40 repeat protein [G 98.4 8.8E-07 1.9E-11 91.9 7.6 160 552-713 228-401 (425)
321 KOG2066 Vacuolar assembly/sort 98.4 1.3E-05 2.7E-10 91.5 17.4 183 450-649 39-234 (846)
322 KOG2695 WD40 repeat protein [G 98.3 1.7E-06 3.6E-11 89.9 9.3 160 455-617 216-386 (425)
323 COG0823 TolB Periplasmic compo 98.3 6.6E-05 1.4E-09 84.0 22.2 204 474-685 175-391 (425)
324 PF11768 DUF3312: Protein of u 98.3 0.00071 1.5E-08 75.8 29.8 90 641-732 237-327 (545)
325 KOG2114 Vacuolar assembly/sort 98.3 0.00012 2.5E-09 84.5 23.9 206 499-709 30-261 (933)
326 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.6E-11 62.0 6.6 38 441-478 2-39 (39)
327 PF00400 WD40: WD domain, G-be 98.3 2.1E-06 4.5E-11 62.0 6.4 39 482-520 1-39 (39)
328 KOG2066 Vacuolar assembly/sort 98.3 2E-05 4.4E-10 89.9 17.2 182 492-693 39-233 (846)
329 PF14583 Pectate_lyase22: Olig 98.3 0.0016 3.4E-08 70.8 30.9 271 455-731 40-378 (386)
330 KOG3621 WD40 repeat-containing 98.3 0.00011 2.4E-09 83.1 22.7 272 449-730 32-349 (726)
331 PF08596 Lgl_C: Lethal giant l 98.3 0.00016 3.5E-09 80.1 23.6 260 452-724 3-326 (395)
332 PF06433 Me-amine-dh_H: Methyl 98.3 0.00095 2.1E-08 71.2 27.8 256 472-732 17-318 (342)
333 KOG2114 Vacuolar assembly/sort 98.2 0.00037 8.1E-09 80.4 25.9 195 452-650 27-245 (933)
334 cd00216 PQQ_DH Dehydrogenases 98.2 0.00072 1.6E-08 77.6 28.8 228 463-698 111-429 (488)
335 COG0823 TolB Periplasmic compo 98.2 7.3E-05 1.6E-09 83.6 18.9 188 528-720 185-385 (425)
336 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0014 3E-08 72.0 28.8 246 429-683 25-347 (353)
337 KOG1920 IkappaB kinase complex 98.2 0.00033 7.2E-09 83.5 24.6 231 491-731 67-319 (1265)
338 KOG3617 WD40 and TPR repeat-co 98.2 3.6E-05 7.9E-10 87.8 15.6 261 454-732 19-331 (1416)
339 PRK02888 nitrous-oxide reducta 98.2 0.00019 4.1E-09 82.1 21.3 215 458-682 200-450 (635)
340 COG3391 Uncharacterized conser 98.2 0.00073 1.6E-08 75.0 25.9 220 453-675 76-310 (381)
341 PF04053 Coatomer_WDAD: Coatom 98.1 0.00025 5.4E-09 79.7 21.6 221 448-693 30-262 (443)
342 KOG3617 WD40 and TPR repeat-co 98.1 2.4E-05 5.3E-10 89.1 12.6 260 453-722 62-373 (1416)
343 PF06433 Me-amine-dh_H: Methyl 98.1 0.0012 2.6E-08 70.4 24.4 241 412-660 52-329 (342)
344 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0041 8.9E-08 63.1 25.6 143 462-609 23-167 (354)
345 PF03178 CPSF_A: CPSF A subuni 98.0 0.0011 2.5E-08 71.6 23.3 210 515-730 3-261 (321)
346 PF00780 CNH: CNH domain; Int 98.0 0.0063 1.4E-07 64.1 28.3 224 460-699 5-261 (275)
347 PF03178 CPSF_A: CPSF A subuni 98.0 0.0027 5.9E-08 68.7 26.0 214 472-690 2-262 (321)
348 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.00084 1.8E-08 68.0 19.8 151 541-695 16-167 (354)
349 KOG1008 Uncharacterized conser 98.0 3.9E-06 8.5E-11 93.3 3.1 198 451-649 57-276 (783)
350 KOG1008 Uncharacterized conser 98.0 2.6E-06 5.6E-11 94.7 1.4 198 492-693 56-275 (783)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.0083 1.8E-07 69.4 30.1 187 462-652 69-337 (527)
352 COG3386 Gluconolactonase [Carb 97.9 0.0038 8.3E-08 66.9 24.9 218 498-723 30-274 (307)
353 PF11768 DUF3312: Protein of u 97.9 0.00017 3.8E-09 80.5 14.7 102 429-533 238-340 (545)
354 PF00780 CNH: CNH domain; Int 97.9 0.005 1.1E-07 64.8 25.3 215 503-732 6-253 (275)
355 PF06977 SdiA-regulated: SdiA- 97.9 0.0042 9.1E-08 64.4 23.9 199 530-731 16-247 (248)
356 PF06977 SdiA-regulated: SdiA- 97.8 0.019 4.1E-07 59.6 27.2 200 443-645 14-247 (248)
357 PF02897 Peptidase_S9_N: Proly 97.8 0.012 2.6E-07 66.0 28.0 221 494-717 125-383 (414)
358 PF04841 Vps16_N: Vps16, N-ter 97.7 0.052 1.1E-06 60.9 30.6 191 473-676 62-272 (410)
359 PF08596 Lgl_C: Lethal giant l 97.7 0.0036 7.9E-08 69.5 20.9 206 439-647 75-334 (395)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.084 1.8E-06 61.2 32.8 148 463-612 121-338 (527)
361 PRK10115 protease 2; Provision 97.7 0.1 2.2E-06 62.5 34.2 237 453-698 129-399 (686)
362 PF08553 VID27: VID27 cytoplas 97.6 0.0072 1.6E-07 71.8 22.9 141 505-648 494-647 (794)
363 PF04841 Vps16_N: Vps16, N-ter 97.6 0.024 5.3E-07 63.5 25.8 190 515-719 62-274 (410)
364 PF05694 SBP56: 56kDa selenium 97.5 0.095 2E-06 57.8 28.0 221 461-683 86-393 (461)
365 PF14583 Pectate_lyase22: Olig 97.4 0.05 1.1E-06 59.4 24.6 242 478-725 16-303 (386)
366 COG3386 Gluconolactonase [Carb 97.4 0.037 8.1E-07 59.4 23.6 208 423-638 43-274 (307)
367 KOG1897 Damage-specific DNA bi 97.4 0.33 7.2E-06 57.8 32.1 276 450-730 530-894 (1096)
368 PRK13616 lipoprotein LpqB; Pro 97.4 0.019 4.2E-07 67.0 22.6 185 493-688 350-563 (591)
369 KOG4640 Anaphase-promoting com 97.4 0.00084 1.8E-08 75.4 9.9 94 451-545 21-115 (665)
370 PF14727 PHTB1_N: PTHB1 N-term 97.3 0.26 5.6E-06 55.0 29.4 261 462-730 37-356 (418)
371 PF05096 Glu_cyclase_2: Glutam 97.3 0.19 4.1E-06 52.3 26.2 194 483-684 34-251 (264)
372 KOG4499 Ca2+-binding protein R 97.3 0.061 1.3E-06 54.1 20.7 208 505-715 28-264 (310)
373 COG5276 Uncharacterized conser 97.3 0.33 7.1E-06 50.7 30.5 270 451-732 87-367 (370)
374 KOG3621 WD40 repeat-containing 97.2 0.0028 6.1E-08 72.1 12.2 137 491-628 32-179 (726)
375 PRK13616 lipoprotein LpqB; Pro 97.2 0.058 1.3E-06 63.1 23.3 186 535-729 349-563 (591)
376 PRK10115 protease 2; Provision 97.2 0.43 9.4E-06 57.2 30.7 200 493-700 127-353 (686)
377 PF08553 VID27: VID27 cytoplas 97.1 0.027 5.9E-07 67.0 19.8 140 548-692 493-646 (794)
378 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.017 3.6E-07 51.9 13.6 101 453-561 2-109 (111)
379 COG3490 Uncharacterized protei 97.1 0.092 2E-06 54.4 20.6 230 455-691 72-346 (366)
380 smart00320 WD40 WD40 repeats. 97.1 0.0014 3E-08 44.7 5.4 37 442-478 4-40 (40)
381 smart00320 WD40 WD40 repeats. 97.1 0.0018 4E-08 44.0 5.9 39 482-520 2-40 (40)
382 KOG4441 Proteins containing BT 97.0 0.04 8.8E-07 64.3 19.8 230 461-698 284-551 (571)
383 PF05096 Glu_cyclase_2: Glutam 97.0 0.56 1.2E-05 48.8 26.0 179 537-723 46-249 (264)
384 PHA02713 hypothetical protein; 97.0 0.051 1.1E-06 63.5 20.5 216 473-698 273-538 (557)
385 PF15390 DUF4613: Domain of un 97.0 0.17 3.8E-06 57.2 23.0 145 451-596 57-220 (671)
386 KOG1897 Damage-specific DNA bi 96.9 1.6 3.4E-05 52.4 32.7 271 449-730 628-938 (1096)
387 PF07995 GSDH: Glucose / Sorbo 96.9 0.95 2.1E-05 49.3 27.9 232 453-688 4-330 (331)
388 KOG2395 Protein involved in va 96.9 0.044 9.6E-07 60.9 16.9 128 594-724 351-491 (644)
389 PRK13684 Ycf48-like protein; P 96.8 1 2.2E-05 49.1 30.2 269 450-732 45-329 (334)
390 COG4257 Vgb Streptogramin lyas 96.8 0.54 1.2E-05 48.7 23.1 237 453-702 64-314 (353)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.28 6.1E-06 54.6 23.1 88 455-544 6-117 (415)
392 KOG4441 Proteins containing BT 96.8 0.056 1.2E-06 63.1 18.6 218 504-727 285-534 (571)
393 KOG4499 Ca2+-binding protein R 96.8 0.14 2.9E-06 51.7 18.2 164 464-630 73-264 (310)
394 COG3490 Uncharacterized protei 96.8 0.12 2.6E-06 53.5 18.1 156 568-725 58-246 (366)
395 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.081 1.7E-06 47.5 14.9 101 538-644 2-110 (111)
396 PF10647 Gmad1: Lipoprotein Lp 96.7 0.47 1E-05 49.6 23.1 188 537-726 25-230 (253)
397 KOG4640 Anaphase-promoting com 96.7 0.0066 1.4E-07 68.4 9.3 92 493-587 21-115 (665)
398 KOG2395 Protein involved in va 96.7 0.044 9.5E-07 60.9 15.2 142 546-692 344-499 (644)
399 PF14870 PSII_BNR: Photosynthe 96.6 1.3 2.9E-05 47.4 26.8 267 450-731 16-301 (302)
400 PHA02713 hypothetical protein; 96.5 0.18 3.8E-06 59.0 20.1 177 548-731 304-530 (557)
401 COG3204 Uncharacterized protei 96.5 0.49 1.1E-05 49.5 20.8 195 489-690 82-309 (316)
402 COG3204 Uncharacterized protei 96.5 0.59 1.3E-05 48.9 21.3 163 446-609 81-265 (316)
403 KOG2444 WD40 repeat protein [G 96.5 0.0032 7E-08 63.0 4.6 139 507-649 33-178 (238)
404 PF14870 PSII_BNR: Photosynthe 96.4 0.79 1.7E-05 49.0 22.5 204 435-645 88-301 (302)
405 TIGR03118 PEPCTERM_chp_1 conse 96.3 2 4.2E-05 45.5 25.1 217 453-673 25-307 (336)
406 PF15390 DUF4613: Domain of un 96.2 0.21 4.6E-06 56.5 17.3 171 536-715 20-213 (671)
407 TIGR03074 PQQ_membr_DH membran 96.2 1.5 3.3E-05 52.8 25.8 112 462-576 194-354 (764)
408 KOG2079 Vacuolar assembly/sort 96.2 0.071 1.5E-06 63.7 14.1 101 461-565 98-202 (1206)
409 PF07995 GSDH: Glucose / Sorbo 96.2 2.6 5.5E-05 45.9 25.9 230 494-729 3-330 (331)
410 PF02333 Phytase: Phytase; In 96.1 1.9 4.2E-05 47.4 23.9 188 460-650 66-292 (381)
411 PLN00033 photosystem II stabil 96.1 3.3 7.1E-05 46.2 35.0 147 581-731 242-396 (398)
412 KOG3630 Nuclear pore complex, 96.1 0.075 1.6E-06 63.8 13.5 144 494-638 102-262 (1405)
413 PF10647 Gmad1: Lipoprotein Lp 95.8 2.1 4.6E-05 44.6 22.2 140 494-638 25-184 (253)
414 PHA03098 kelch-like protein; P 95.8 0.36 7.8E-06 56.1 18.1 151 548-704 343-522 (534)
415 COG5276 Uncharacterized conser 95.7 3.4 7.3E-05 43.4 25.1 252 428-692 107-368 (370)
416 COG4257 Vgb Streptogramin lyas 95.6 2.3 5E-05 44.2 20.2 210 494-717 63-288 (353)
417 PLN02153 epithiospecifier prot 95.6 1.5 3.3E-05 47.7 20.8 175 548-725 86-324 (341)
418 PF05694 SBP56: 56kDa selenium 95.4 5.7 0.00012 44.2 29.9 220 503-723 86-392 (461)
419 TIGR03074 PQQ_membr_DH membran 95.4 2.2 4.8E-05 51.5 22.9 67 550-616 262-353 (764)
420 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 1.2 2.7E-05 49.6 19.2 71 580-650 310-400 (415)
421 KOG2444 WD40 repeat protein [G 95.3 0.032 7E-07 56.0 6.0 136 592-732 33-175 (238)
422 PF10214 Rrn6: RNA polymerase 95.3 8.2 0.00018 47.0 27.9 177 490-694 77-277 (765)
423 TIGR02604 Piru_Ver_Nterm putat 95.2 0.84 1.8E-05 50.4 17.5 144 578-723 14-202 (367)
424 KOG2079 Vacuolar assembly/sort 95.1 0.066 1.4E-06 64.0 8.7 96 588-686 98-198 (1206)
425 PRK13684 Ycf48-like protein; P 95.1 2.7 5.8E-05 45.8 20.8 150 492-647 172-330 (334)
426 PF14727 PHTB1_N: PTHB1 N-term 95.1 7.5 0.00016 43.6 27.9 224 504-732 37-316 (418)
427 PHA03098 kelch-like protein; P 95.0 0.78 1.7E-05 53.3 17.5 183 461-650 294-513 (534)
428 TIGR02604 Piru_Ver_Nterm putat 95.0 1.3 2.9E-05 48.9 18.3 142 451-594 14-200 (367)
429 COG1520 FOG: WD40-like repeat 95.0 7.2 0.00016 42.9 29.9 150 461-615 68-225 (370)
430 PF03022 MRJP: Major royal jel 94.8 5.3 0.00011 42.6 21.3 164 559-722 35-253 (287)
431 PLN00033 photosystem II stabil 94.7 9.3 0.0002 42.7 26.1 110 577-690 280-396 (398)
432 PF10168 Nup88: Nuclear pore c 94.6 5.5 0.00012 47.8 23.0 75 493-568 85-181 (717)
433 KOG1898 Splicing factor 3b, su 94.5 16 0.00034 44.7 28.3 165 560-730 855-1044(1205)
434 PF12894 Apc4_WD40: Anaphase-p 94.4 0.12 2.6E-06 39.1 5.5 33 450-483 11-43 (47)
435 KOG2377 Uncharacterized conser 94.2 1.9 4.2E-05 47.5 16.2 121 449-571 65-190 (657)
436 KOG1916 Nuclear protein, conta 94.1 0.028 6E-07 65.7 2.4 163 445-612 127-328 (1283)
437 PHA02790 Kelch-like protein; P 94.1 1.5 3.2E-05 50.4 16.4 179 461-650 271-472 (480)
438 PF10395 Utp8: Utp8 family; I 93.9 16 0.00035 43.0 24.0 122 573-698 125-264 (670)
439 PF12234 Rav1p_C: RAVE protein 93.9 1.6 3.4E-05 51.2 16.0 72 493-565 30-103 (631)
440 PHA02790 Kelch-like protein; P 93.7 3.2 7E-05 47.6 18.4 144 548-698 319-475 (480)
441 PF12234 Rav1p_C: RAVE protein 93.7 2.3 5.1E-05 49.8 16.9 122 442-566 21-156 (631)
442 TIGR03548 mutarot_permut cycli 93.6 11 0.00024 40.6 21.4 101 548-650 73-196 (323)
443 PF14761 HPS3_N: Hermansky-Pud 93.5 4.7 0.0001 40.7 16.5 103 463-568 29-165 (215)
444 PF14781 BBS2_N: Ciliary BBSom 93.5 2.6 5.6E-05 39.3 13.5 118 496-615 2-133 (136)
445 COG1520 FOG: WD40-like repeat 93.5 14 0.00031 40.6 28.3 189 506-698 70-273 (370)
446 KOG3598 Thyroid hormone recept 93.5 0.13 2.9E-06 62.8 6.4 16 54-69 1952-1967(2220)
447 KOG2247 WD40 repeat-containing 93.5 0.024 5.2E-07 62.4 0.4 149 495-646 37-186 (615)
448 TIGR03548 mutarot_permut cycli 93.4 11 0.00025 40.5 21.2 107 503-611 72-198 (323)
449 PLN02193 nitrile-specifier pro 93.3 9.1 0.0002 43.8 21.0 149 548-700 229-417 (470)
450 KOG1916 Nuclear protein, conta 93.3 0.094 2E-06 61.5 4.6 125 446-571 176-328 (1283)
451 COG3823 Glutamine cyclotransfe 93.2 3.3 7.2E-05 41.4 14.5 173 503-682 55-247 (262)
452 KOG2377 Uncharacterized conser 93.2 1.2 2.6E-05 49.1 12.5 104 618-723 65-172 (657)
453 PF10168 Nup88: Nuclear pore c 93.0 6.8 0.00015 47.1 19.8 81 451-531 85-188 (717)
454 PF08728 CRT10: CRT10; InterP 92.9 3.2 6.9E-05 49.2 16.4 110 538-647 103-245 (717)
455 KOG3630 Nuclear pore complex, 92.8 0.95 2.1E-05 54.9 12.0 142 578-722 101-261 (1405)
456 PLN02153 epithiospecifier prot 92.8 17 0.00037 39.5 22.9 62 461-525 32-112 (341)
457 PF12894 Apc4_WD40: Anaphase-p 92.7 0.36 7.8E-06 36.5 5.6 31 492-522 11-41 (47)
458 COG3292 Predicted periplasmic 92.5 8.8 0.00019 43.8 18.3 268 450-730 164-443 (671)
459 TIGR03547 muta_rot_YjhT mutatr 92.4 19 0.00041 39.2 21.5 41 686-726 291-332 (346)
460 PRK14131 N-acetylneuraminic ac 92.4 17 0.00036 40.3 21.0 14 559-572 190-203 (376)
461 COG3823 Glutamine cyclotransfe 92.4 3.2 6.9E-05 41.5 13.1 170 548-722 56-247 (262)
462 KOG2280 Vacuolar assembly/sort 92.3 4.1 8.9E-05 47.8 15.9 171 557-730 63-242 (829)
463 COG5167 VID27 Protein involved 92.3 1.8 4E-05 48.3 12.6 142 546-693 478-632 (776)
464 PF10214 Rrn6: RNA polymerase 92.0 37 0.0008 41.5 26.9 157 449-608 78-277 (765)
465 COG1770 PtrB Protease II [Amin 92.0 30 0.00066 40.5 24.6 200 494-698 130-353 (682)
466 KOG2280 Vacuolar assembly/sort 91.9 17 0.00037 42.9 20.2 180 472-660 64-255 (829)
467 PF14761 HPS3_N: Hermansky-Pud 91.7 9 0.00019 38.7 15.8 140 505-647 29-213 (215)
468 PF10433 MMS1_N: Mono-function 91.7 30 0.00065 39.9 23.8 226 501-731 219-473 (504)
469 COG1506 DAP2 Dipeptidyl aminop 91.4 37 0.0008 40.4 26.4 149 446-597 55-235 (620)
470 PRK14131 N-acetylneuraminic ac 90.9 20 0.00044 39.6 19.7 39 687-725 314-353 (376)
471 PLN02193 nitrile-specifier pro 90.9 34 0.00074 39.1 29.6 172 548-724 176-386 (470)
472 COG5167 VID27 Protein involved 90.9 4.7 0.0001 45.2 13.9 143 503-649 478-633 (776)
473 KOG1896 mRNA cleavage and poly 90.6 54 0.0012 40.9 26.2 168 559-731 1005-1210(1366)
474 PRK05560 DNA gyrase subunit A; 90.6 42 0.00091 41.2 23.3 226 501-730 495-768 (805)
475 PF07569 Hira: TUP1-like enhan 90.6 1.6 3.4E-05 44.6 9.6 66 585-650 18-97 (219)
476 KOG1898 Splicing factor 3b, su 90.5 20 0.00043 43.8 19.5 153 474-630 855-1030(1205)
477 PF10433 MMS1_N: Mono-function 90.5 38 0.00083 39.0 29.9 247 459-714 219-503 (504)
478 PF14781 BBS2_N: Ciliary BBSom 90.3 8.4 0.00018 35.9 13.0 111 583-698 4-130 (136)
479 PF02333 Phytase: Phytase; In 90.1 34 0.00074 37.8 24.3 181 548-732 68-288 (381)
480 PF10395 Utp8: Utp8 family; I 90.0 11 0.00023 44.5 16.5 164 450-615 129-313 (670)
481 KOG1983 Tomosyn and related SN 89.9 8.9 0.00019 47.9 17.0 229 451-697 36-268 (993)
482 KOG2247 WD40 repeat-containing 89.4 0.042 9E-07 60.6 -3.1 141 580-726 37-180 (615)
483 PF07250 Glyoxal_oxid_N: Glyox 89.4 7.1 0.00015 40.5 13.2 129 601-729 48-194 (243)
484 TIGR03606 non_repeat_PQQ dehyd 89.4 44 0.00095 38.0 32.0 56 449-504 28-90 (454)
485 PF08728 CRT10: CRT10; InterP 89.3 8 0.00017 45.9 15.1 110 622-732 103-244 (717)
486 PF13449 Phytase-like: Esteras 89.2 22 0.00048 38.5 17.8 143 578-721 20-231 (326)
487 PF07569 Hira: TUP1-like enhan 89.2 2.3 5E-05 43.4 9.5 62 670-732 17-93 (219)
488 TIGR03547 muta_rot_YjhT mutatr 88.8 39 0.00084 36.7 21.4 24 503-526 63-97 (346)
489 PF08801 Nucleoporin_N: Nup133 88.7 13 0.00028 41.8 16.1 28 666-693 192-219 (422)
490 PF08801 Nucleoporin_N: Nup133 88.6 14 0.00031 41.5 16.4 30 620-649 190-220 (422)
491 PF10313 DUF2415: Uncharacteri 88.6 1.6 3.5E-05 32.3 5.6 31 451-481 1-34 (43)
492 PRK05560 DNA gyrase subunit A; 88.4 71 0.0015 39.2 27.1 255 457-715 493-792 (805)
493 KOG4460 Nuclear pore complex, 88.0 22 0.00048 40.3 16.4 194 465-692 55-273 (741)
494 KOG1900 Nuclear pore complex, 87.9 4.5 9.8E-05 50.2 12.1 150 581-732 82-270 (1311)
495 COG1506 DAP2 Dipeptidyl aminop 87.8 67 0.0014 38.2 23.5 146 488-638 55-234 (620)
496 TIGR03118 PEPCTERM_chp_1 conse 87.7 42 0.00092 35.8 20.9 194 537-732 24-277 (336)
497 COG5290 IkappaB kinase complex 87.7 12 0.00025 44.3 14.5 93 581-677 250-350 (1243)
498 TIGR01063 gyrA DNA gyrase, A s 87.2 83 0.0018 38.6 26.8 261 456-721 490-794 (800)
499 PF13449 Phytase-like: Esteras 87.0 50 0.0011 35.8 23.2 143 493-637 20-232 (326)
500 PF11635 Med16: Mediator compl 86.3 51 0.0011 40.2 20.1 179 465-643 65-345 (753)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-44 Score=369.54 Aligned_cols=302 Identities=24% Similarity=0.395 Sum_probs=274.5
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-EEeccCCCceEEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRF 500 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~V~~l~f 500 (732)
..+.|.++|+||..+.- +..+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..+.+|...|++++|
T Consensus 132 tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 132 TGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW 208 (480)
T ss_pred ecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence 56778999999988874 56778999999999999999999999999999999999988765 778999999999999
Q ss_pred cC-----CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737 501 SP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 501 sp-----dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~ 575 (732)
.| ..++||+++.||+|+|||+..+. ++..+.+|+.+|+|+.|- |..++++++.|++|++|+...|.+.+.++
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhc
Confidence 76 57799999999999999999765 688999999999999998 45699999999999999999999999888
Q ss_pred ccCC-eeEEEEe-----------CCCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEEcC
Q 004737 576 CQSG-ATQMRFQ-----------PRLG-------------------------RILAAAIENYISILDVETQ-VCRLKLQG 617 (732)
Q Consensus 576 ~~~~-i~~v~~s-----------p~g~-------------------------~ll~~s~dg~I~IwDl~t~-~~i~~l~~ 617 (732)
.+.. |+.++++ |.+. .+++++.|.++.+|+.... +++..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 6654 6666554 3333 4899999999999998654 58888999
Q ss_pred CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 618 h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
|..-|+.+.|+||++||++++ |..|++||-+++ +.+..+.+|-..|+.++|+.|.+.|++++.|.++++||+++.+
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999 999999999999 8888999999999999999999999999999999999999999
Q ss_pred EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 697 TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 697 ~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+. .+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 88 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-43 Score=360.11 Aligned_cols=289 Identities=24% Similarity=0.381 Sum_probs=266.4
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
+.-..+.||.++|.|+.|+|+|+.||+|+.|.++++||+.+....+++++|..+|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCC----CCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEE
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAA 595 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspd----g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~ 595 (732)
..++....+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+..+ ..|+|++|--+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 2458889999999999999999999888754 56999999866 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe-----------CCCC-------------------------EEEEEe-
Q 004737 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 638 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s-----------pdg~-------------------------~Lasgs- 638 (732)
+.|++|++|+...+.+...+++|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 3333 489999
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC
Q 004737 639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 717 (732)
Q Consensus 639 Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~ 717 (732)
|.++.+|+....+ +++..+.+|..-|+.+.|+||++++++++.|..|++||..+|+.+ .+.+|-+.|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999976543 678888999999999999999999999999999999999999999 8889999999999999999
Q ss_pred EEEEEECCCeEEEeC
Q 004737 718 MVASASHDKCVKIWK 732 (732)
Q Consensus 718 ~LaSgs~DG~I~IWD 732 (732)
+|++|+.|.+++|||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-41 Score=349.31 Aligned_cols=283 Identities=27% Similarity=0.437 Sum_probs=264.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEEEecC
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~ 522 (732)
.--+-+.+|..|.|+.|++.||||+.+|.++||+..++..+.+|.+|...|.++.|+|. +..+|||+.||+|++|+++
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 33467789999999999999999999999999999999999999999999999999996 6689999999999999999
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
+.. ++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+...++ ..+|.+++|.++|..+++|+.|..-
T Consensus 250 ~e~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 250 QET-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred CCc-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 754 6889999999999999999975 556999999999999999887766664 4569999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CCCEEE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLL 679 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~ 679 (732)
+|||+++++++..+.+|..+|.+|+|+|+|..|++|+ |++++|||++.. .++..+..|.+-|+.+.|+| .|.+|+
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeEEE
Confidence 9999999999999999999999999999999999999 999999999987 66899999999999999998 789999
Q ss_pred EEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 680 VIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.+||+|.
T Consensus 405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999988 8889999999999999999999999999999994
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.2e-39 Score=318.07 Aligned_cols=291 Identities=18% Similarity=0.327 Sum_probs=263.8
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 518 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 518 (732)
.++..+++++|.++|.++.|++|.++|++++.||.+.|||.-+...++.++-...+|..++|+|.|+++|+|+-|+.+.|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 44566899999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EecCCCC-----ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeC-CCCE
Q 004737 519 WDTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP-RLGR 591 (732)
Q Consensus 519 WDl~s~~-----~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp-~g~~ 591 (732)
|++.+.. ...+.+.+|.+.+.|+.|.+| ..+ ++++.|.++.+||+++++.+..|..+ +.|.++.++| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC-Cce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 9998542 235679999999999999986 344 48999999999999999999999865 4599999999 8999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~ 670 (732)
+++|+.|+..++||++.+.++..|.+|+..|++|+|.|+|.-|++|+ |++.++||++.... ..+..-.....+|++++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVA 280 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEE
Confidence 99999999999999999999999999999999999999999999999 88999999998732 22233334457899999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 671 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 671 fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
||..|++|++|..|.++.+||.-.++.+ .+.+|++.|+++..+|||..|+||+.|..|+||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999888877 8889999999999999999999999999999994
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=304.03 Aligned_cols=288 Identities=23% Similarity=0.434 Sum_probs=264.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
++-.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445678999999999999999999999999999999954 5666788899999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
+++++ ..+.+++|...|+.++-+.-|..++++++.|+++++||+++.++++++...-.++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccce-eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99987 58899999999999997777889999999999999999999999999987788999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCC----CceEEEEEeCC
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT 674 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~-~~i~~~~~~~----~~I~sl~fspd 674 (732)
|++||++.......+.+|...|+.+..+++|.++.+-+ |.++++||++..... .++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999988 999999999876443 4466666553 33578899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+.++.+++.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999987666 88999999999999999999999999999976
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-37 Score=320.29 Aligned_cols=258 Identities=26% Similarity=0.368 Sum_probs=238.8
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
+...++|.+... ..+.+|.+|+..|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+
T Consensus 196 sG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs 272 (459)
T KOG0272|consen 196 SGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS 272 (459)
T ss_pred CCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence 344555665555 467889999999999999996 668999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeE
Q 004737 504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQ 582 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~ 582 (732)
|++|+|+|.|.+-++||++++. .+....||...|.+|+|++|| .++++|+.|..-+|||++++.++..+..+ ..|..
T Consensus 273 G~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~ 350 (459)
T KOG0272|consen 273 GKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS 350 (459)
T ss_pred Cceeeecccccchhhcccccch-hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceee
Confidence 9999999999999999999876 467788999999999999997 68889999999999999999999998855 56999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
++|+|+|..+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|.+|++++ |++++||..++. .++..+.
T Consensus 351 V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLa 427 (459)
T KOG0272|consen 351 VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLA 427 (459)
T ss_pred EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhc
Confidence 99999999999999999999999999999999999999999999999 688999999 999999999988 8899999
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+|.+.|.++.+++++.++++++.|.++++|.
T Consensus 428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999995
No 7
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-34 Score=297.20 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=254.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
..+.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.. ....+..|...|.++.|+++ ..++++++.++.|++||+++++....+. +...+.+++|+|++..+++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 64 46677889989999999998 4677778789999999999888888777 445699999999977777777799999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737 603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg 681 (732)
+||+++++.+..+..|...|.+++|+|+++.+++++ |+.|++||++.. ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999876 5666666778899999999998877777
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987776 6668889999999999999999999999999997
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-35 Score=288.54 Aligned_cols=283 Identities=21% Similarity=0.365 Sum_probs=244.4
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcC-----CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737 442 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 515 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 515 (732)
...++++|++.|+.++..+. -..+++++.|.++.+|++. .|..++.+++|...|..+..++||++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45678999999999999986 4578999999999999875 46778999999999999999999999999999999
Q ss_pred EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCC--CC
Q 004737 516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPR--LG 590 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~--g~ 590 (732)
+++||+.+++ ..+.|.+|...|.+++|++|. .-+++|+.|.+|++|++. +.|..++... +=|.|++|+|. ..
T Consensus 87 lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGE-STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCc-EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999985 688999999999999999995 556699999999999998 4555544433 34999999998 67
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737 591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 669 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl 669 (732)
.|+.++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+ ||.+.+||++.+ +++..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 899999999999999999999999999999999999999999999999 999999999987 5555554 67889999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE----ccC-----CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~----~~h-----~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|+|+..+|+.+. +..|+|||++++.++ .+ .+. .....+++|++||..|++|..|+.|++|.
T Consensus 240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999987655554 446999999998876 11 122 23456789999999999999999999994
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-34 Score=323.65 Aligned_cols=286 Identities=30% Similarity=0.533 Sum_probs=256.9
Q ss_pred EEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 443 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 443 v~~l~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+..+.+ |...|+|+.|+++|+++++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444544 48899999999999999999999999999998877 777788999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcC
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~d 598 (732)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+. .|++++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999998 888899999999999999999999998654 69999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEcCCCCC--EEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEEE
Q 004737 599 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 670 (732)
Q Consensus 599 g~I~IwDl~t~~--~i~~l~~h~~~--V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl~ 670 (732)
+.|+|||+.++. +...+..+... +++++|+|++.||+++. |+.+++||+..+ .+...+..|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776665 99999999999999999 789999999987 666666666653 44556
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEE--CCCeEEEeC
Q 004737 671 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 732 (732)
Q Consensus 671 fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs--~DG~I~IWD 732 (732)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999987776 77889 89999999999999999998 799999995
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-35 Score=285.09 Aligned_cols=268 Identities=19% Similarity=0.387 Sum_probs=243.6
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-eeEEeecCCcceEEE
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 541 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-~~~~l~~h~~~V~sl 541 (732)
-+||++++|.+|++|...+|.+..++....+.|..+.+.||++.||+++. -.||+||+.+... ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999877889999999999999999875 4799999998765 789999999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CCC
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 620 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~ 620 (732)
.|..+| ..+++|++||+++|||++...+-+.+.+..+|+++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999997 556699999999999999999999999999999999999999999999999999999998877666543 456
Q ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC---ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 004737 621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 695 (732)
Q Consensus 621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~---~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~- 695 (732)
.|.++...|||.+++.+. .|..++|++-.... ..++..+..|...+..|.+||++++|++++.|.+++||++++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999988 88999999976432 4567778899999999999999999999999999999999988
Q ss_pred eEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 696 KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 696 ~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.. .+.+|...++.++||.|+.||+||+.|+.+++||
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 222 7779999999999999999999999999999997
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-36 Score=305.46 Aligned_cols=288 Identities=26% Similarity=0.476 Sum_probs=269.6
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
.+...+.+|...|+.+-|.|+-..+++++.|++|++||..+++....+++|.+.|.+|+|+..|++||+++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCC
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg 599 (732)
..+...+++...+|...|.+++|-|.| ..+++|+.|.+|+.|++.++.|+.++..+.. +..++...||..+++++.|.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence 998666788899999999999999997 5555999999999999999999999987655 78889999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCC---------------CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spd---------------g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
+|++|-+.++.+...+..|+.+|.|++|.|. +.++.+++ |++|++||+.++ .|+.++.+|.
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ghd 334 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGHD 334 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEeccc
Confidence 9999999999999999999999999999772 24888888 999999999998 9999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 664 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.|..++|+|.|+||+++..|+++++||+.++.++ ++..|...|+++.|+.+..+++||+-|..+++|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999998 7789999999999999999999999999999995
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.3e-34 Score=279.06 Aligned_cols=283 Identities=23% Similarity=0.322 Sum_probs=247.2
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVR 499 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~ 499 (732)
..+.|.++|+|...+|.. .++++...+.|+.+.+.||+++||+++. -.|++||+.+++ .+.++++|+..|+.|.
T Consensus 15 sA~YDhTIRfWqa~tG~C---~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGIC---SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eccCcceeeeeehhcCeE---EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 456789999999999964 5667777788999999999999999885 689999999765 5789999999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--c
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 577 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~ 577 (732)
|..+|+++++|++||+++|||++... ......|..+|+++..+|+...+| +|+.+|.|++||+.+..+...+.. .
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCC
Confidence 99999999999999999999999844 344455889999999999965555 999999999999998877665543 3
Q ss_pred CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737 578 SGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
..+.++.+.|+|..++++...|..++|++-+. +++..++.|.+.+..+.++||++||++++ |.+++||+.++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 45899999999999999999999999998753 45667889999999999999999999999 999999999876
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 713 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~s 713 (732)
.+....+.+|...+..|+||.|+.||++++.|+.+++||+..++.+ .+.+|.....|++..
T Consensus 248 --~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 --FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 3555677888999999999999999999999999999999999988 677888888887764
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.9e-35 Score=295.74 Aligned_cols=287 Identities=21% Similarity=0.391 Sum_probs=262.6
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+...+++.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..+++++-..|+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
|++..+ .++.+.||-..|.|++.+|.- .+|++|+.|.++++||+++...+..+. +...|..+.+.|-...+++++.|
T Consensus 221 DLe~nk-vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNK-VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred echhhh-hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999876 589999999999999999984 677799999999999999999999998 45679999999988999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
++|++||++.++....+..|+..|.+++.+|....+++++-+.|+-|++..+ ..+..+.+|..-|++++...|+ ++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~-v~ 374 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG-VL 374 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-eE
Confidence 9999999999999999999999999999999999999999777999999887 6667788899999999998887 48
Q ss_pred EEEEcCCeEEEEECCCCeEEEE----c-----cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 679 LVIGCYETLELWNMTENKTLTL----S-----AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~~~~~~----~-----~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++|+.+|.+.+||.+++..... . ..+..|.+.+|...+..|+||..|.+|++|+
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 8899999999999999876511 1 2356799999999999999999999999995
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-33 Score=296.20 Aligned_cols=304 Identities=21% Similarity=0.379 Sum_probs=260.0
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
.++++++++++-+++|.... .+.||...|++|+|-|... .+++|++|++|.+|+-..++...+++.|...|.|++|
T Consensus 122 GEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred ecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 57788899988888886544 4789999999999999776 4899999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~ 577 (732)
+|||.+|++++.||+|.|||-.++++ +..+. +|.+.|.++.|+||+..++ +++.|.+++|||+.+.+++.++...
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence 99999999999999999999998875 55565 8999999999999986665 8899999999999999999999865
Q ss_pred CCe----eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 578 SGA----TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 578 ~~i----~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
..+ ..+.|. ...|++.+.+|.|.+++.....+...+.+|...|+++..++++++|++|+ ||.|.-||..++..
T Consensus 277 ~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred CchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 553 334454 57899999999999999999999999999999999999999999999999 99999999765421
Q ss_pred cee--------EE-------------------------------------------------------------------
Q 004737 653 GEC--------IH------------------------------------------------------------------- 657 (732)
Q Consensus 653 ~~~--------i~------------------------------------------------------------------- 657 (732)
.+. +.
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 100 00
Q ss_pred -----------------------------------------------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 658 -----------------------------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 658 -----------------------------------------------~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
....|..+|++++|+||+.+|+++...+.+.+|
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 011234567778888888888888888888888
Q ss_pred ECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 691 NMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 691 Dl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|+.+.+.. .+.-|.+.|.+++|+|++.++|||+-|-+|.||+
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 88777665 4556999999999999999999999999999995
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-33 Score=294.71 Aligned_cols=303 Identities=20% Similarity=0.321 Sum_probs=254.7
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec---cCCCceEEEE
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 499 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~V~~l~ 499 (732)
.+.|..+.+++ |.+|+...+++.|..-|.|+.|+|||+++|+++.||+|.|||-.+++.+..+. +|.+.|.+++
T Consensus 166 ~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfals 242 (603)
T KOG0318|consen 166 GSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALS 242 (603)
T ss_pred ccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEE
Confidence 34455555554 88888889999999999999999999999999999999999999999999997 8999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCCc------------------------------------------eeEEeecCCcc
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPDY------------------------------------------SLRTFTGHSTT 537 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~~------------------------------------------~~~~l~~h~~~ 537 (732)
|+||+..|+|++.|.+++|||+.+.+. +...+.+|...
T Consensus 243 WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 243 WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 999999999999999999999985431 23345689999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-------------------------------EE------------
Q 004737 538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-------------------------------VF------------ 574 (732)
Q Consensus 538 V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-------------------------------~~------------ 574 (732)
|+++..++++ ..|++|+.||.|.-||+.++..-+ .+
T Consensus 323 ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 323 ITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred eeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 9999999998 556699999999999986543110 00
Q ss_pred ------------------------------e---------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEE
Q 004737 575 ------------------------------K---------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRL 613 (732)
Q Consensus 575 ------------------------------~---------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~ 613 (732)
. ..-...+++++|++..+++|+.|+.|+||.+.... ...
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~ 481 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA 481 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence 0 00113567889999999999999999999998754 334
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 614 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 614 ~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
.+..|.++|++|+++||+.||+++. .+.+.+||+.+... ....+..|..+|.+++|+|+..++++|+-|-.|.||++
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 5667999999999999999999999 99999999998743 44456668999999999999999999999999999999
Q ss_pred CCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 693 TENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 693 ~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+..... ...+|...|+.+.|- +...|++.+.|..||+|.
T Consensus 560 ~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 560 KKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred cChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 765433 445898889999996 566899999999999995
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-33 Score=279.87 Aligned_cols=267 Identities=15% Similarity=0.263 Sum_probs=228.8
Q ss_pred CCCCCceeeeeecCCC--ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEE
Q 004737 422 ADPRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 499 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g--~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~ 499 (732)
...+|+.+-+|+.... ..-..++.+.||+..|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 4566777777776443 22235788999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec-CCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~-h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~ 577 (732)
|++|.+.|++|+.|++|++|++.... ....... +.+.|.|+.|+|+. +.+|++++.|++|++||+++.+....+..+
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence 99999999999999999999998643 2333222 37899999999985 678889999999999999998888777654
Q ss_pred -CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeE
Q 004737 578 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 656 (732)
Q Consensus 578 -~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i 656 (732)
+.++.++++|||..+++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+.+..|+|||+.+. .++
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v 267 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVV 267 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---hhh
Confidence 458999999999999999999999999999999988876 889999999999998888888888999999987 444
Q ss_pred EEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 657 HELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 657 ~~~~~---------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
.++.. ......+++|+++|..|+++-.|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 43322 13345778999999999999999999999874
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=303.99 Aligned_cols=277 Identities=21% Similarity=0.438 Sum_probs=248.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
+..|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999998777777788999999999999999999999999999999987543 44
Q ss_pred Eeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 530 TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVE 607 (732)
Q Consensus 530 ~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~ 607 (732)
.+.. |...|.+++|+|++ ..|++|++||+|+|||....+..+.+..++ .+.+++|+|.-+.|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 4444 45999999999974 566699999999999999888887777554 59999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 004737 608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 685 (732)
Q Consensus 608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg 685 (732)
++.|+.++.+|+..|..+.|.+++.+|++++ |..+++||+++. +.+..+.+|...++++.|+|-. ..|.+++.|+
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999965 6777888999999999999966 5567788999
Q ss_pred eEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 686 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 686 ~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 3348999999999999999999999999999993
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-33 Score=295.04 Aligned_cols=282 Identities=25% Similarity=0.453 Sum_probs=249.5
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCC--Ce--EEEEec----------cCCCceEEEEEcCCCCeE
Q 004737 443 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FT--VKSTLE----------EHTQWITDVRFSPSLSRL 507 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t--~~--~~~~l~----------~h~~~V~~l~fspdg~~L 507 (732)
++.++ |+.+|.+++|+|-.. .+++|+.|-+.++|++.. .. ....|+ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 44555 999999999999655 899999999999999874 11 111111 124579999999999999
Q ss_pred EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-eEEEEe
Q 004737 508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 586 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-~~v~~s 586 (732)
|+|+.||.++||+.... .+.++..|.++|.++.|+.+|.+++ +++.|+++.+||..++.....+..+... ..+.|.
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999999853 3788999999999999999975554 9999999999999999999988877666 778998
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737 587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 665 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~ 665 (732)
.+ ..|++.+.|+.|+|+-+....++.++.+|.++|.+|.|+|.+.+|++++ |++++||+.... .+++.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 76 7799999999999999999999999999999999999999999999999 899999998776 788889999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 666 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 666 I~sl~fspdg~---------~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|+.+.|+|++. .+++++.|++|++||+..+.++ .+..|..+|.+++|+|+++|||+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999763 5899999999999999999998 7779999999999999999999999999999995
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-33 Score=292.86 Aligned_cols=275 Identities=20% Similarity=0.330 Sum_probs=252.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
..|++++|+.+|.+||+|+.||.++||+. ++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++. ....
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQ 313 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-EEEe
Confidence 57999999999999999999999999995 567888999999999999999999999999999999999998876 4667
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 609 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~ 609 (732)
+..|..+...+.|-.+ .-|++++.|+.|+|+.+....++.++. +++.|.++.|+|.+..|++++.|++++||.....
T Consensus 314 f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 7778888788999855 456789999999999999888888776 4577999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCEEEEEEeCCC---------CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 610 VCRLKLQGHKNQVHSVCWNTSG---------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 610 ~~i~~l~~h~~~V~sla~spdg---------~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
.+...+.+|...|..+.|+|+| ..+++++ |++|++||+..+ .+++.+..|..+|++++|+|++++++
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEE
Confidence 9999999999999999999965 3567776 999999999988 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 680 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|+.|+.|.+|++++++++......+.|..++|+.+|.+|..+-.|+.|++-|
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 99999999999999999998878888899999999999999999999998754
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=303.50 Aligned_cols=290 Identities=20% Similarity=0.340 Sum_probs=252.7
Q ss_pred EEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737 441 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 518 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 518 (732)
..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 35778999999999999999 899999999999999999986 8999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEc
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~ 597 (732)
||++++.+ +..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+..+ +.+..+.|.+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999885 43333 34568999999999889999999999999999999988887654 56999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC--CceEEEEEeC
Q 004737 598 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 673 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~--~~I~sl~fsp 673 (732)
|+.++||+.+....+..+.. +.....||..+|++.++++-+ |+.|.+|.+...........+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554332 334567899999999999988 9999999976554333334445543 4456789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737 674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 732 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD 732 (732)
||.+|++|..||.+++||.++.+++ .+.+|+..+..+.|+|.. ..+|||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999988 888999999999999975 5899999999999997
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-34 Score=293.00 Aligned_cols=290 Identities=20% Similarity=0.331 Sum_probs=244.3
Q ss_pred CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC---CeEEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737 437 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 513 (732)
Q Consensus 437 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 513 (732)
..++.+.+++..|++.|.-+.||++|+|||+++.|.+..||.+.. .+..+++.+|..+|..+.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456678889999999999999999999999999999999998753 45678999999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeEEEEeCCCCE
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR 591 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~v~~sp~g~~ 591 (732)
..+++||+.++......-.+|...+.+++|.||+..+ ++|+.|+.|..||+. |......+. ...+.++++.+||++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE
Confidence 9999999999885433444556889999999998665 499999999999997 444444332 135889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc--eEE
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS 668 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~--I~s 668 (732)
+++.+.|..|++|+.++...+..+. ...+|++++.+.+++++++.- +..|++||+... ..+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999999876665444 457899999999999988877 889999999865 555555555432 333
Q ss_pred EEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737 669 CVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 732 (732)
Q Consensus 669 l~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD 732 (732)
-||-- +..++++|++|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+|++||+|+||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 44543 4588999999999999999999999 888999999999999976 4899999999999994
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.5e-32 Score=324.71 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----e----EEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeE
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 516 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I 516 (732)
+..|.+.|++++|+|+|++||+|+.|+.|+|||.... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 5569999999999999999999999999999997542 1 122333 346799999987 47899999999999
Q ss_pred EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEe-CCCCEEEEE
Q 004737 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 595 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~s-p~g~~ll~~ 595 (732)
+|||+.++. .+..+.+|...|++++|+|.+..+|++|+.|+.|++||++++.++..+.....+.++.|. +++..++++
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999999765 577888999999999999865678889999999999999999999888877789999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC---CceeEEEeecCCCceEEEE
Q 004737 596 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 596 s~dg~I~IwDl~t~~-~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~---~~~~i~~~~~~~~~I~sl~ 670 (732)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|++||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 567788899999999997 677888888 9999999997532 2356778889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE--------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 671 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 671 fspdg~~L~sgs~dg~I~IwDl~t~~~~--------------~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|++++.+|++++.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+|||
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999997
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=264.87 Aligned_cols=283 Identities=24% Similarity=0.452 Sum_probs=240.1
Q ss_pred eEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCC---CeEEEEe-ccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737 440 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 514 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t---~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg 514 (732)
+..++.+.+|++.|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|..++|+|.|++|+++++|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467889999999999999998 88999999999999999884 4455555 47999999999999999999999999
Q ss_pred eEEEEecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEec-cCCeeEEEEeCCC
Q 004737 515 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL 589 (732)
Q Consensus 515 ~I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---~~i~~~~~-~~~i~~v~~sp~g 589 (732)
++.||.-..+.+ ++.++.||..+|.|++|+++| .+||+|+.|+.|.||.+..+ +|...+.. ...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999998775543 467899999999999999996 67889999999999999743 45666653 3458999999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737 590 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 665 (732)
Q Consensus 590 ~~ll~~s~dg~I~IwDl~---t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~ 665 (732)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3478999999999999999999999999999 899999986532 12235678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCC------eEE--EEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEeC
Q 004737 666 FHSCVFHPTFPSLLVIGCYETLELWNMTEN------KTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 732 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs~dg~I~IwDl~t~------~~~--~~~~h~~~V~sla~spd-g~~LaSgs~DG~I~IWD 732 (732)
++.+.|. + ..|++++.|+.|++|..... +.+ ....|...|+++.|.|. .++|++|++||.|++|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4 45999999999999976543 111 33478999999999995 67999999999999994
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.7e-32 Score=275.01 Aligned_cols=301 Identities=15% Similarity=0.199 Sum_probs=262.0
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
..+.|....+|+..+|. ....+.+|++.|+|+.|+.||.|||||+.+|.|+||...++.....+...-..|.-+.|+
T Consensus 81 TGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred ecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence 45567778899999987 456689999999999999999999999999999999999999988887666779999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCC
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSG 579 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~ 579 (732)
|.+.+|+.|+.||.|..|.+.+.. ..+.+.+|..++++=.|.|+|++++ ++..||+|++||+.++..+..+.. +..
T Consensus 158 p~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred ccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCc
Confidence 999999999999999999999864 5789999999999999999986655 899999999999999999888773 344
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------CCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEEC
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVCWN---TSGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--------~h~~~V~sla~s---pdg~~Lasgs-Dg~I~IWDl 647 (732)
..++.++..+..++.+..++.+++....+++.+.... .+...+.||.+. ..-.+.++|+ ||+|.|||+
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 7888999998999999999999999999998887766 344445555554 4556777888 999999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
... .++..-.|...|..+.|.+ ..+|++++.+|.|+.||.++|.++ ++.+|...|.+++++|+.++++|++.|+
T Consensus 316 a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 316 AAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 875 3334445778899999999 788999999999999999999988 8889999999999999999999999999
Q ss_pred eEEEeC
Q 004737 727 CVKIWK 732 (732)
Q Consensus 727 ~I~IWD 732 (732)
+.+||+
T Consensus 391 ~a~VF~ 396 (399)
T KOG0296|consen 391 TALVFE 396 (399)
T ss_pred eEEEEe
Confidence 999985
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-32 Score=303.69 Aligned_cols=273 Identities=23% Similarity=0.392 Sum_probs=238.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------------------------------eEEEEeccCCC
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEHTQ 493 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-------------------------------~~~~~l~~h~~ 493 (732)
++..-...|+|+.|++|++.||.|-.|..|++|.+... ....++.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34344456999999999999999999999999987621 12244678999
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 573 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~ 573 (732)
+|..+.|+|+.++|++++.|++||+|.+++.. .+..+.+|..+|+++.|+|.| +++++++.|++.++|.......++.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhh
Confidence 99999999999999999999999999999866 578889999999999999996 7888999999999999999888888
Q ss_pred Eecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC
Q 004737 574 FKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 651 (732)
Q Consensus 574 ~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~ 651 (732)
+.++ ..+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|.+++|+|+|++|++|+ |+.|++||+.++
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~- 609 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG- 609 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC-
Confidence 8755 5699999999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------------------------E-EEccCCCC
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAHDKL 706 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~------------------------~-~~~~h~~~ 706 (732)
..+..+..|.+.|.++.|+.+|..|++++.|.+|++||+..-.. + .+..-..+
T Consensus 610 --~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tp 687 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTP 687 (707)
T ss_pred --cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCce
Confidence 77888888999999999999999999999999999999853221 1 33344457
Q ss_pred eeEEEEeCCCCEEEEE
Q 004737 707 VSSLAASTVNGMVASA 722 (732)
Q Consensus 707 V~sla~spdg~~LaSg 722 (732)
|.++.|...+-.|++|
T Consensus 688 v~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 688 VVGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEEeccceeEEec
Confidence 8888887766445544
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-31 Score=293.75 Aligned_cols=288 Identities=22% Similarity=0.337 Sum_probs=251.3
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737 440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 518 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 518 (732)
+..++.+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...+++++++|||.++|||+.||.|+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 34556666666789999999999999998765 89999999998888888999999999999999999999999999999
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 596 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s 596 (732)
||..++- ++.+|..|+..|+.+.|+..++ .+++.+-||+|+.||+...++.+++..+.+ ..|++..|.|..+++|+
T Consensus 377 Wn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 377 WNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 9999865 6899999999999999999874 555889999999999999999999998776 56788888888888888
Q ss_pred cCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 597 IEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 597 ~dg-~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
.|. .|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++ |.+|++||+-... -..+.-.....+..++|+|+
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~---~~vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS---GTVETLEIRSDVLAVSFRPD 531 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC---ceeeeEeeccceeEEEEcCC
Confidence 875 799999999999999999999999999999999999999 9999999997652 22222335677999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-E----------------Ec----cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-T----------------LS----AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~----------------~~----~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|+.|++++-||.|.+||++.+..+ . +. .....++.+++++||.+|++|+....|+||+
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 999999999999999999776544 1 11 1235789999999999999999999999985
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=292.45 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=259.5
Q ss_pred EEEEEecCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 441 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafS-pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
..+..+-|..+.|.+|+|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+||+.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 4556678888999999885 57789999999999999998887766 889999999999966678899999999999999
Q ss_pred ecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEE-------eccCCeeEEEEe
Q 004737 520 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 586 (732)
Q Consensus 520 Dl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i---~~~-------~~~~~i~~v~~s 586 (732)
.++++. .++....+|...|.+++++..+..+|++++.|++|++|++...+.. ..+ .+...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 885433 2345678999999999999999999999999999999999762211 111 255679999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737 587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 665 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~ 665 (732)
|+...+++|+.|.+.+||+++......++.+|+..|.|+.|++....+++++ |.+|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999988 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 666 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|..+.|-.+++.|++++.||-|++|+++++.++ ++..|++.|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999998 8899999999999999999999999999999995
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-30 Score=259.09 Aligned_cols=260 Identities=24% Similarity=0.372 Sum_probs=231.5
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC------eEEEEeccCCCceEE
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITD 497 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~ 497 (732)
+-|..+-+||..+.. .++.++-....|..|+|+|.|+++|+|+-|+...||++.+. ...+.+.+|++.+.|
T Consensus 74 SqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc 150 (343)
T KOG0286|consen 74 SQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC 150 (343)
T ss_pred ccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEE
Confidence 345666778866653 46667788899999999999999999999999999999865 455778999999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737 498 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577 (732)
Q Consensus 498 l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~ 577 (732)
+.|-+| ..|+|++.|.++.+||++++. .+..|.+|.+.|.++++.|...+.+++|+.|+..++||++.+.++..|..+
T Consensus 151 C~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 151 CRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred EEEcCC-CceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 999885 579999999999999999987 488999999999999999955677779999999999999999999999854
Q ss_pred -CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737 578 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 578 -~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
..|..++|.|+|.-|++|+.|++.++||++....+..+.. ...+|++++|+..|++|++|. |..+.+||.-.+
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~--- 305 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG--- 305 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---
Confidence 5699999999999999999999999999999887777763 345899999999999999988 889999999877
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+.+..+.+|++.|.++..+|||.-+++++.|..|+||.
T Consensus 306 e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 77888899999999999999999999999999999994
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-31 Score=297.11 Aligned_cols=243 Identities=25% Similarity=0.431 Sum_probs=223.1
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC------------------------------ceeEEeecCC
Q 004737 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------YSLRTFTGHS 535 (732)
Q Consensus 486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~------------------------------~~~~~l~~h~ 535 (732)
.++......++|..|++|+++||.|..|..|++|.+...+ ...+++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 3444455679999999999999999999999999887311 1245688999
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737 536 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 614 (732)
Q Consensus 536 ~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~ 614 (732)
++|..+.|+|+. .+|++|+.|++||+|.+.+..++..++.+ .+|..+.|+|.|-+|++++.|++-++|......+.+.
T Consensus 452 GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred Cceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 999999999995 56669999999999999999999888854 5689999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 615 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 615 l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
+.+|-+.|.|+.|+|+..|+++|+ |.+|++||+.++ ..++.+.+|..+|.+++|+|+|++|++|+.|+.|.+||+.
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 999999999999999999999999 999999999998 7899999999999999999999999999999999999999
Q ss_pred CCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 694 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 694 t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++.+ .+.+|++.|.++.|+.||.+||+|+.|..|++||
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99888 8889999999999999999999999999999997
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-29 Score=278.08 Aligned_cols=281 Identities=21% Similarity=0.326 Sum_probs=253.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC-CeEEEEecCCCC
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPD 525 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~I~IWDl~s~~ 525 (732)
......|+|++|++..+.||+|-..|...+|.+....+++.+.-....|..++|+..|.+||.|+.. |.+-||++.+..
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 3344789999999999999999999999999999999999998888899999999999999998765 899999999876
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 604 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw 604 (732)
+ +....+|...+++++++||| .++++|+.||.|+|||...+-|..+|. +...++.+.|+..++.+++.+.||+|+.|
T Consensus 342 Y-VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 342 Y-VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred e-eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 5 56678899999999999997 677799999999999999999999997 45679999999999999999999999999
Q ss_pred ECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737 605 DVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 605 Dl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg 681 (732)
|+...+..+++... .....|++..|.|.++++|+ |. .|+||++.++ +.+..+.+|+++|.+++|+|++..|+++
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEec
Confidence 99999999988753 33567889999999999999 66 8999999999 8888999999999999999999999999
Q ss_pred EcCCeEEEEECCCCe-EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 682 GCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 682 s~dg~I~IwDl~t~~-~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.|.+|++||+-... .+....+...+.+++|+|+|+-|+++.-||.|.+||
T Consensus 497 SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred cccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 999999999996653 334456778899999999999999999999999997
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-31 Score=288.87 Aligned_cols=304 Identities=21% Similarity=0.320 Sum_probs=246.2
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
...+...+++|.+.+|. .++.++. |+++|.-++|+|.+.+|++|+.|+.|+|||+..+.+.+.|++|.+.|..+.|
T Consensus 79 ~a~rs~llrv~~L~tgk---~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F 155 (775)
T KOG0319|consen 79 TASRSQLLRVWSLPTGK---LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLF 155 (775)
T ss_pred EeeccceEEEEEcccch---HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEe
Confidence 35567788999999993 5666777 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC--eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737 501 SPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 501 spdg~--~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~ 578 (732)
+|+-. .|++|..|+.|++||+.+...++.....|.+.|++++|.+|+..++ +++.|..|.+||+.+.++.+++....
T Consensus 156 ~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye 234 (775)
T KOG0319|consen 156 HPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYE 234 (775)
T ss_pred CCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhh
Confidence 99644 5899999999999999976666788899999999999999976665 88899999999986544332221110
Q ss_pred CeeE----------------------------------------------------------------------------
Q 004737 579 GATQ---------------------------------------------------------------------------- 582 (732)
Q Consensus 579 ~i~~---------------------------------------------------------------------------- 582 (732)
.+.+
T Consensus 235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 0000
Q ss_pred --------------EEEe------------------------------------------CCCCEEEEEEcCCeEEEEEC
Q 004737 583 --------------MRFQ------------------------------------------PRLGRILAAAIENYISILDV 606 (732)
Q Consensus 583 --------------v~~s------------------------------------------p~g~~ll~~s~dg~I~IwDl 606 (732)
++|- ..|..|++++.|..+++|.+
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence 0000 11113444445555555533
Q ss_pred -----------------------------------------------CCCeE-----EE----EEcCCCCCEEEEEEeCC
Q 004737 607 -----------------------------------------------ETQVC-----RL----KLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 607 -----------------------------------------------~t~~~-----i~----~l~~h~~~V~sla~spd 630 (732)
...+. +. ....|...|+|++++|+
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 22000 00 11247788899999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCee
Q 004737 631 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 708 (732)
Q Consensus 631 g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~ 708 (732)
.++|++|+ |.+.+||++... .....+.+|...|.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|.
T Consensus 475 dkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred CceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence 99999999 899999999855 788899999999999999999999999999999999999999999 8889999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEeC
Q 004737 709 SLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 709 sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+.|-.+++.|++|+.||.||||+
T Consensus 552 ra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEe
Confidence 999999999999999999999996
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=253.14 Aligned_cols=281 Identities=18% Similarity=0.349 Sum_probs=242.7
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
.+...+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEEe-ccCCeeEEEEeCCCCEEEEEEc
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~--~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~ 597 (732)
+.+++ ..+.+.+|.+.|+.+.|+.+ ..++++|+.|..+++||.+.. +++..+. ....|.++.+.. ..|++|+.
T Consensus 88 V~TGk-v~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGK-VDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV 163 (307)
T ss_pred cccCe-eeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence 99987 58999999999999999987 578889999999999999764 4555554 235677777754 67999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce--EEEEEeCC
Q 004737 598 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPT 674 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I--~sl~fspd 674 (732)
||+++.||++.+.......+ .+|+|++|++++...++++ |++|++.|-.++ +.+..+++|.+.- ..|++...
T Consensus 164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence 99999999999987776654 4899999999999999988 999999999998 6677777776543 45678888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCC-eeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~-V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
..+++.|++||.|++||+.+...+ .+..|... |.+++++|.-..|+++... .+..|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 889999999999999999999888 55566665 8999999988777777544 35555
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=284.47 Aligned_cols=281 Identities=20% Similarity=0.387 Sum_probs=255.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999988888776 579999999999999999644 899999999999999999999999999998
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cee--------eeEEeccCCeeEEEEeCCCC
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 590 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-----~~~--------i~~~~~~~~i~~v~~sp~g~ 590 (732)
.. .+.+...|.+.|++++..||+..++ +++.|.+|++||..- +.. .++++....+.|+.++|+++
T Consensus 444 ~~-l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 AS-LVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hh-hhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 66 3677789999999999999986665 999999999999742 111 14555678899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737 591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 669 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl 669 (732)
+++++--|++++||-+++.+....+.+|.-+|.|+..+||++++++|+ |..|+||-+.-+ .|-+.+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999877 7888899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.++++++.|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999888877 8899999999999999999999999999999995
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=6.5e-32 Score=273.62 Aligned_cols=266 Identities=22% Similarity=0.402 Sum_probs=232.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 527 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~ 527 (732)
.....|+|+.+ |...+++|..|++|+|||..+..+...+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+++ +
T Consensus 195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge-~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE-P 269 (499)
T ss_pred ccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-h
Confidence 35567999998 45689999999999999999999999999999999999994 5699999999999999999987 6
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i---~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +.+. +...|..+.|+. +++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence 89999999999999998 468889999999999999765422 2333 234577777765 59999999999999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737 604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs 682 (732)
|++.++++++++.+|...|-|+.+ .++++++|+ |.+|++||+..+ .|+..+.+|+.-|.++.|. .+.+++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cceeeecc
Confidence 999999999999999999988875 688999999 999999999998 8999999999999999995 45699999
Q ss_pred cCCeEEEEECCCCeE----------EEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 683 CYETLELWNMTENKT----------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 683 ~dg~I~IwDl~t~~~----------~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.||+|+|||+..+.- ..+..|.+.|..+.|. ...|++++.|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999976532 1556799999999985 66799999999999997
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.7e-31 Score=268.68 Aligned_cols=262 Identities=25% Similarity=0.455 Sum_probs=239.8
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEc
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fs 501 (732)
...|.++++||..+|.. ...++||++.|.+++|+..|++||+++.|-.+.+||..+ .++++.+.+|...|.+++|-
T Consensus 126 as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 126 ASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL 202 (406)
T ss_pred ecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE
Confidence 34577889999888864 678999999999999999999999999999999999987 67778888999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCe
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA 580 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i 580 (732)
|.|.+|++++.|.+|+.|++.++. ++.++.+|...|..+..+.|| .++++|+.|.+|++|-+.++.|...+.. +..+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred ecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 999999999999999999999875 699999999999999999986 7889999999999999999988877764 4457
Q ss_pred eEEEEeCC---------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEE
Q 004737 581 TQMRFQPR---------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 644 (732)
Q Consensus 581 ~~v~~sp~---------------g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~I 644 (732)
.+++|.|. +.++++++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++. |+++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 88888763 13788899999999999999999999999999999999999999999999 889999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
||+.+. .|.+.+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 361 wdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999988 899999999999999999999999999999999999975
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.1e-31 Score=277.53 Aligned_cols=250 Identities=24% Similarity=0.451 Sum_probs=218.4
Q ss_pred CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCe
Q 004737 437 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRT 515 (732)
Q Consensus 437 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~ 515 (732)
|..|.....+.+|..+|+++.|+++|.++++|+.+|.|++|+..- ..+..+.. |...|++++|+|+...|++|+.||+
T Consensus 125 g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ 203 (464)
T KOG0284|consen 125 GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT 203 (464)
T ss_pred CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCe
Confidence 445555667889999999999999999999999999999999754 34444544 4589999999999999999999999
Q ss_pred EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEE
Q 004737 516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA 594 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~ 594 (732)
|+|||....+ ..+.+.+|.-.|.+++|+|. .-++++++.|..|++||.+++.|+.++..+ ..|..+.|++++++|++
T Consensus 204 ikiWdf~~~k-ee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt 281 (464)
T KOG0284|consen 204 IKIWDFRMPK-EERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT 281 (464)
T ss_pred EEEEeccCCc-hhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE
Confidence 9999999766 46778999999999999998 578889999999999999999999887654 55999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEE-EeecCCCceEEEEE
Q 004737 595 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIH-ELSCTGNKFHSCVF 671 (732)
Q Consensus 595 ~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~-~~~~~~~~I~sl~f 671 (732)
++.|..+++||+++.+.++.+++|+..|+++.|+|-. .+|++++ ||.|..|.+... +.+. .-..|...|++++|
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~---~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE---EPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc---ccccCCCcccccceeeeec
Confidence 9999999999999999999999999999999999954 4666666 999999999743 2332 33468899999999
Q ss_pred eCCCCEEEEEEcCCeEEEEEC
Q 004737 672 HPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 672 spdg~~L~sgs~dg~I~IwDl 692 (732)
+|-|..|++|+.|.++++|.-
T Consensus 359 hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeEeecCCCcceeeecc
Confidence 999999999999999999965
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=278.73 Aligned_cols=303 Identities=20% Similarity=0.257 Sum_probs=257.6
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp 502 (732)
.-.|..+++|+...+ ....++.+|+..|+++.|...|..||+|+.|+.|.|||+-...-...+++|++.|+..-|..
T Consensus 83 GYaDGsVqif~~~s~---~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 83 GYADGSVQIFSLESE---EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN 159 (888)
T ss_pred EecCceEEeeccCCC---ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence 445788999998876 45678999999999999999999999999999999999988888888999999998888888
Q ss_pred CCCeEEEEeCCCeEEEEecCCCC---------------------------------------------------------
Q 004737 503 SLSRLATSSADRTVRVWDTENPD--------------------------------------------------------- 525 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~--------------------------------------------------------- 525 (732)
+.+++++++.|+.|++||+++..
T Consensus 160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 77888888888888888877100
Q ss_pred --------------------------------------------------------------------------------
Q 004737 526 -------------------------------------------------------------------------------- 525 (732)
Q Consensus 526 -------------------------------------------------------------------------------- 525 (732)
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence
Q ss_pred --------------ce------------------------------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 526 --------------YS------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 526 --------------~~------------------------------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
.. ...+.+|...|.+++++.+ +.++++++ .+.|+
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~Sik 397 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASGA-GESIK 397 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeecC-CCcEE
Confidence 00 0123457788888998876 35554554 77899
Q ss_pred EEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC
Q 004737 562 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 640 (732)
Q Consensus 562 iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg 640 (732)
+|+..+.+|++++.+. -+.+..|.|.+.++++|...|.+.+||+.+...+.++..|.+.|++++.+||++.+++++ |.
T Consensus 398 iWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred EEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 9999999999999875 788999999999999999999999999999999889999999999999999999999999 99
Q ss_pred eEEEEECCCCCC-----ceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEE
Q 004737 641 LVRVWSIGSGSK-----GECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSL 710 (732)
Q Consensus 641 ~I~IWDl~t~~~-----~~~i~----~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sl 710 (732)
+|++||+.-... .+.+. ..-.....|.|+.+|||+++|+++--|.+|+||-+.+-+.. .+.+|.-+|.||
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm 556 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM 556 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE
Confidence 999999853211 01110 11123577999999999999999999999999999999877 899999999999
Q ss_pred EEeCCCCEEEEEECCCeEEEe
Q 004737 711 AASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 711 a~spdg~~LaSgs~DG~I~IW 731 (732)
.++||++.++||+.|.+|+||
T Consensus 557 DIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred eccCCcCeEEeccCCCceEEe
Confidence 999999999999999999999
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=277.43 Aligned_cols=282 Identities=22% Similarity=0.412 Sum_probs=256.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
+.+..|+..|.|+.|+|...+++++-.+|.|.|||.++...++.+....-+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34566899999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCC-eeEEEEeCC-CCEEEEEEcCCe
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQPR-LGRILAAAIENY 600 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~-i~~v~~sp~-g~~ll~~s~dg~ 600 (732)
.. .+..|..|.+.|.|++.+|....+| ++++|-.|++||.+. ..|..++..+.. |.+++|.|. .+.+++++-|++
T Consensus 87 ~e-kV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GE-KVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ce-eeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 87 4899999999999999999965555 999999999999976 467788886665 899999995 567999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCC--CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg--~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
|+||.+....+..++++|...|+|+++-+-| .||++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998754 6999999 779999999887 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 678 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+++|++||+++||+..+.+.. ++.-.-..|+|++-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999988877 55566789999999999999999999888754
No 39
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=265.97 Aligned_cols=280 Identities=23% Similarity=0.362 Sum_probs=246.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec--------cCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+.+..+.|..|||||.||++|+.||.|.|||..+|+..+.++ -+..+|.|+.|+.|...||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445668999999999999999999999999999998765543 478899999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcC
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~d 598 (732)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++--+++|++++.++.+.. |+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999864444458999999999999987777 899999999999999999999986654 8899999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEee---cCCCceEEEEE
Q 004737 599 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVF 671 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~---~~~~~I~sl~f 671 (732)
|+|++|+..+.+|+.+++. ...+|+++-.-|.+ ..+++|. .++|+|.++.. ..++.+. -.++.+.+++.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 44578888877754 5677777 88999999865 4555544 34577889999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 672 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 672 spdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.|++-++||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999988 7779999999999999999999999999999996
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-29 Score=247.16 Aligned_cols=281 Identities=19% Similarity=0.247 Sum_probs=239.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
.+.||..+|+-+.|+.+|.+|++|+.|.++.||-..+|+.+-++.+|.+.|+|+..+.+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEe----CCCcEEEEECC-------CCeeeeEEe-ccCCeeEEEEeCCCCEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI 592 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs----~Dg~I~iWDl~-------t~~~i~~~~-~~~~i~~v~~sp~g~~l 592 (732)
+. +..++ ...+|..+.|+++|+.++++.. ..+.|.++|++ ..++...+. ....++.+.|.|.+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 84 54444 5678999999999877776553 34689999998 344444444 45679999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737 593 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~ 670 (732)
++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++ |.+-++||+++. .+++++. ...+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence 99999999999999998 45555677999999999999999999999 999999999987 6777766 467899999
Q ss_pred EeCCCCEEEEEEcCCe--EEEEECCCCe------------EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 671 FHPTFPSLLVIGCYET--LELWNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 671 fspdg~~L~sgs~dg~--I~IwDl~t~~------------~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
++|-..+++.++.... |.--+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999888888876553 3222333332 22 667999999999999999999999999999974
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.7e-28 Score=252.48 Aligned_cols=258 Identities=31% Similarity=0.539 Sum_probs=229.5
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
+..+++|+..++. ....+..|...|.++.|++++++|++++.|+.|++||+.+++....+..|...|.++.|++++.
T Consensus 30 ~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 30 DGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred CcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 5677788877664 3556778999999999999999999999999999999999888888989999999999999988
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMR 584 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~ 584 (732)
++++++.|+.|++||+.+.. ....+..|...|.+++|+|+ ..++++++.|+.|++||+++++.+..+..+. .+.++.
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184 (289)
T ss_pred EEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEecCccccceEE
Confidence 89888889999999999655 46677789999999999998 4667677779999999999888887777554 799999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737 585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
|++++..+++++.++.|++||+++++.+..+..|...|.+++|++++.++++++ |+.|++||+.+. ..+..+..+.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~ 261 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHT 261 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccC
Confidence 999999999999999999999999988888878999999999999999999998 999999999876 6666777888
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 664 NKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
..+.+++|++++.++++++.|+.|++|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999999999999999999999996
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=247.39 Aligned_cols=282 Identities=18% Similarity=0.261 Sum_probs=249.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--eccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEe
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 520 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWD 520 (732)
+.+++|...|.+++|+.+|..|++|+.|++++||+++..+.... .++|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45778999999999999999999999999999999987755543 468999999999988 567899999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
++..++...+.. ...-.-+.|+|+|+++ +.++.|..|.+.|.++.+.....+....+..++|+.++..++.....|.
T Consensus 94 ~r~~k~~~~i~~--~~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIET--KGENINITWSPDGEYI-AVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeec--cCcceEEEEcCCCCEE-EEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 999875444322 3344568899997655 4788899999999999999888888788999999988788888888899
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
|.|......+++..++.|.....||.|+|+|+||++|+ |-.+.+||+... .|++.+.-+.-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999876 78888888999999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC---------CeEEEe
Q 004737 680 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 731 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D---------G~I~IW 731 (732)
++++|..|-|=++++|..+.-..++++...++|+|...+||.+++| |.||||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988765 567765
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=253.16 Aligned_cols=280 Identities=21% Similarity=0.270 Sum_probs=248.1
Q ss_pred EecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 445 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 445 ~l~~H~~~V~~lafSp---dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+-+|.+|.+.|+...++.+....|+++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4579999999999986 8889999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-eccCCeeEEEEeCCCCEEEEEEcCC
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
-++.. +..+. |..-|..++|+.|.++++ +|+.+..+||||++..+. ...+ .+.+.|..+.|......|++++.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98874 55554 888999999999965555 999999999999976542 2333 3557799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
.|++||.++++.+.++. ...+|+++.++++|++|.++..+.|++||..+. ..++.+. ....|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence 99999999999999987 678999999999999999988889999999876 4555444 356788999999999999
Q ss_pred EEEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 680 VIGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|+.|..++.||..+++.+.. .+|.++|.|+.|+|+|...++|+.||+|+||-
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 999999999999999998833 69999999999999999999999999999993
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=3.6e-29 Score=256.20 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=246.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
.+.+|..|++.|.+|+.+|+.+++|||+.|....||++.+++....+.+|++.|+++.|+.||.+||||.-+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
.++.. ...+...-..|.-+.|+|.+ .+|++|+.||.|.+|.+.++...+.+.. ..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98774 44554556778999999975 6777999999999999998766666664 456889999999999999999999
Q ss_pred EEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee--------cCCCc---eE
Q 004737 601 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGNK---FH 667 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~--------~~~~~---I~ 667 (732)
|++||..++.++..+.. ......++.++..+..++.|+ ++.+++-+..++ +.+.... .+... |.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988874 334677889988999999888 889998888777 4443333 22333 44
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+.|+..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 44555566788999999999999999999988889999999999998 78999999999999997
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=282.68 Aligned_cols=265 Identities=28% Similarity=0.444 Sum_probs=229.7
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEeccCCCceEEEEEc
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~~h~~~V~~l~fs 501 (732)
...+..+++|....+.. .....+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++++.+|...|++++|+
T Consensus 177 ~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 177 ASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS 255 (456)
T ss_pred ccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence 34466777777744442 355667899999999999999999999999999999999 5668999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEeccC-
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQS- 578 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~~~~- 578 (732)
|+++++++|+.|++|+|||+++++ +.+.+.+|.+.|++++|++++. ++++++.|+.|++||+.++. +...+....
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence 999999999999999999999855 6899999999999999999975 55577889999999999999 555555332
Q ss_pred --CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE---EEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 579 --GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV---HSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 579 --~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V---~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
.+.++.|+|++.++++++.|+.+++||+..+.+...+.+|...+ .+..+++.+.++++++ |+.|++||+.++
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-- 411 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-- 411 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc--
Confidence 46999999999999999999999999999999999999988753 3445577899999999 999999999986
Q ss_pred ceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 004737 653 GECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 693 (732)
Q Consensus 653 ~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~ 693 (732)
..+..+..| ...+..+.+++...++++.+ .|+.|++|...
T Consensus 412 -~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 -GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 666777778 88899999999999999998 67789999754
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.1e-29 Score=253.29 Aligned_cols=291 Identities=18% Similarity=0.291 Sum_probs=248.5
Q ss_pred CCcccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 004737 394 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 473 (732)
Q Consensus 394 ~~~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~ 473 (732)
.+.+.+|..|+.+..+|.--+.|. ..+.|+++++||+.+|. ...++.||...|..+++|+...||++++.|+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~----tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFA----TGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEE----ecCCCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 345578888888888877644443 45668999999999995 45678999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEE
Q 004737 474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 553 (732)
Q Consensus 474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaS 553 (732)
|+.||++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.+++|||+++.. .+..+.||..+|..+.+.|.+..++ +
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvi-t 294 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVI-T 294 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceE-E
Confidence 9999999999999999999999999999999999999999999999999865 6899999999999999999866555 9
Q ss_pred EeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCC
Q 004737 554 CDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 632 (732)
Q Consensus 554 gs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~ 632 (732)
|+.|++|++||++.++....+.++ ..+.+++.+|....|++++ ...|+-|++..+..+..+.+|...|++++...|+-
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-CccceeccCCccchhhccccccceeeeeeeccCce
Confidence 999999999999999988777654 5589999999865555554 45789999999999999999999999999988876
Q ss_pred EEEEEeCCeEEEEECCCCCCceeEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 633 YLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 633 ~LasgsDg~I~IWDl~t~~~~~~i~~~~~-----~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
+++.+.+|.+.+||.+++........... .+..|++.+|...+..|+++..|.+|++|.-.+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 55545588999999999865444433322 246689999999999999999999999997543
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-28 Score=241.01 Aligned_cols=264 Identities=23% Similarity=0.381 Sum_probs=219.1
Q ss_pred CCCCceeeeeecCCCceeEEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEE
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVR 499 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l-~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~ 499 (732)
.+.|+.+|+|+...+..+.....+ .+|+..|++++|+|.|+|||+|+.|.++.||.-. +++++.++++|...|.|++
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va 112 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA 112 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence 455788888888877667777666 4799999999999999999999999999999766 4578899999999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEE
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVF 574 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~---t~~~i~~~ 574 (732)
|+++|.+||+++.|+.|-||.+.... .+...+.+|...|..+.|+|. ..+|++++.|.+|++|+-. ..+++..+
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl 191 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTL 191 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence 99999999999999999999998443 345688999999999999998 5788899999999999876 34577777
Q ss_pred ecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 575 KCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 575 ~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
..+ ..+.+++|++.|.++++++.|++++||-..+.-. ..|...++.+.|. ...|++++ |+.|++|.-.....
T Consensus 192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 754 4799999999999999999999999998663211 1277899999998 44677776 99999998764311
Q ss_pred ---ce-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 004737 653 ---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 653 ---~~-~i~~~~~~~~~I~sl~fspd-g~~L~sgs~dg~I~IwDl~ 693 (732)
.. .......|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 12234568889999999995 6779999999999999874
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.2e-29 Score=276.15 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=249.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
+...+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|..|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL 604 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg~I~Iw 604 (732)
++.++.||-+.|..+.|++.-..++ ++++|-+|+||+..+++|+..+.++.. |.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 5889999999999999999865555 999999999999999999999997766 8999999998999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737 605 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 654 (732)
Q Consensus 605 Dl~t~-----------------------------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~ 654 (732)
|+..- -....+++|...|+.++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 97521 12345779999999999999999999999 77999999976432 3
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.+.+..+|.+.|.++.|+|....+++.++|++|+|||+.....+ ++....+..+.++.+|..+++++|.+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 45667789999999999999999999999999999999998888 6666678899999999999887765555 5454
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-28 Score=264.87 Aligned_cols=257 Identities=21% Similarity=0.284 Sum_probs=230.7
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
...+.+|+..+. ..++.+.-..-+|+++.|-...+++++|+.|..|+||+..+++.++.|+.|.+.|.||+.+|.-.
T Consensus 34 nG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P 110 (794)
T KOG0276|consen 34 NGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP 110 (794)
T ss_pred cCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC
Confidence 344566776655 35666777788999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 584 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~ 584 (732)
+++|+|.|-+|++||.+..-.+..++.||...|++++|+|.+.+-+++++-|++|+||.+....+..+++. ..+|.|++
T Consensus 111 ~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 111 YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence 99999999999999999988888999999999999999999999999999999999999999998888885 46799999
Q ss_pred EeCCC--CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737 585 FQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 661 (732)
Q Consensus 585 ~sp~g--~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~ 661 (732)
|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-.+|++|+ ||+++||+..+- +...++..
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~ 267 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNY 267 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhc
Confidence 98864 4899999999999999999999999999999999999999999999999 999999998876 55556666
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYETLE 688 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg~I~ 688 (732)
...+++|++-.+.+..+++|..+|.|.
T Consensus 268 gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 268 GLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CCceEEEEeecCCCCeEEEeccCCcEE
Confidence 678899999988888888887777554
No 50
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.9e-30 Score=263.62 Aligned_cols=282 Identities=20% Similarity=0.341 Sum_probs=246.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 34577899999999999998999999999999999987665 6778888899999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
++... ...++.+|.+.|+++.|.-.... +++|+.|.+|++||+....|.+++-..+.+..++.. ...++++..|+.
T Consensus 248 vd~~r-~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLR-LRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchh-hhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 99866 47899999999999999876444 779999999999999999999888766777777776 356788888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC----CCceEEEEEeCCC
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 675 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~----~~~I~sl~fspdg 675 (732)
|++||.++..++.....+. .|+++..++++..|.+++ |+++.++|+++. ...+.+... ....+.++|||++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988664 999999999999999989 999999999987 444444332 2448899999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EEc-cCC-CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 676 PSLLVIGCYETLELWNMTENKTL-TLS-AHD-KLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~-~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.|+++|+.||.|+||++.++++. .+. .+. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999988 333 233 3699999999999999999999999994
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.8e-30 Score=260.88 Aligned_cols=261 Identities=20% Similarity=0.394 Sum_probs=224.8
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
+..+|.++++||..+.+ ....+.||++.|.|+.|. .+.|++|+.|.+|+|||+.+++++.++-.|...|..+.|+
T Consensus 212 SGlrDnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNSLE---CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred cccccCceEEeccccHH---HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 57789999999987764 456789999999999995 5699999999999999999999999999999999999997
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-C
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 578 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~ 578 (732)
. .++++++.|.+|.|||+..+.. ..+.+.||...|+.+.|+ ..++++++.|.+|++|++.++++++++..+ .
T Consensus 287 n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 4 5999999999999999987652 235788999999999998 358889999999999999999999998854 4
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc----
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---- 653 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~---- 653 (732)
+|.|+.+ .++.+++|+.|.+|++||++.|.+++.+++|+.-|.||.|. .+.|++|. ||+|+|||+..+...
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccc
Confidence 5666655 45788899999999999999999999999999999999995 56688888 999999999876432
Q ss_pred --eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 654 --ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 654 --~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.|+..+..|.+.|..+.|.. ..+++++.|.+|.|||..++..-
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence 25666777888999999954 45899999999999999877544
No 52
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-27 Score=240.18 Aligned_cols=283 Identities=22% Similarity=0.301 Sum_probs=237.4
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC--CCeEEE
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 518 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~I~I 518 (732)
+..+.++.-.+.|+++.|+++|.+|++++.|.+++|||..+++.++++..++..|..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344556667788999999999999999999999999999999999999988889999999887777777766 889999
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
.++.++++ ++.+.||...|.+|+.+|.+ ..+++++.|++|++||++..+|...+.. .+-..++|+|.|-.++++...
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCC
Confidence 99998774 99999999999999999997 5555999999999999998888877765 344568999998888888888
Q ss_pred CeEEEEECCCC--eEEEEEc---CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEE
Q 004737 599 NYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSC 669 (732)
Q Consensus 599 g~I~IwDl~t~--~~i~~l~---~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl 669 (732)
+.|++||++.- .+..++. +.....+.|.|+|||++|+.+. .+.+++.|.-++. ....+..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence 89999999863 3333332 3466889999999999999888 7799999998884 45554444322 3688
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
+|+||++++++++.||+|.+|++++++.+ .+.+ +..++.++.|+|.-.++++++ ..+.+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 99999999999999999999999999988 5555 789999999999887777764 467676
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=242.71 Aligned_cols=291 Identities=20% Similarity=0.308 Sum_probs=242.5
Q ss_pred ccccCCcccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 004737 390 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 469 (732)
Q Consensus 390 ~~~~~~~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs 469 (732)
+..+...+.++...+.+..|...-.+|. ..+.|+.+-+|++.... +.+-.+.+|+++|..+.|.+|++.|++++
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~a----SgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFA----SGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEe----ecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEec
Confidence 3344445566666777666666555554 56678888888865542 35567789999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 470 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 470 ~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
.|++|+.||+++|+.++.+++|...|..+.-+.-| .++.+++.|++++|||+++.. .++++. ....++++.|...+.
T Consensus 110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSD 187 (338)
T ss_pred CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEeccccc
Confidence 99999999999999999999999999998844433 467788999999999999755 355543 456899999998876
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCC----CeEEEEEcCCC----
Q 004737 549 DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHK---- 619 (732)
Q Consensus 549 ~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t----~~~i~~l~~h~---- 619 (732)
.++ +|+-|+.|++||++......++..+ ..|+.+..+++|.++++-+.|.++++||++- .+++..+.+|.
T Consensus 188 qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe 266 (338)
T KOG0265|consen 188 QVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE 266 (338)
T ss_pred cee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence 666 8999999999999999999999864 5699999999999999999999999999985 35677777653
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
.....++|+|++.++.+++ |..+++||.... .++..+.+|.+.|+++.|+|...+|.+++.|++|++=++
T Consensus 267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 3456789999999999999 999999999876 789999999999999999999999999999999987543
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=247.55 Aligned_cols=287 Identities=25% Similarity=0.386 Sum_probs=240.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------------------CeEEEEeccCCCceEEEEEcCC
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~~~~l~~h~~~V~~l~fspd 503 (732)
+-..+..|+.++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3456788999999999999999999999999999999871 1356788899999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccC
Q 004737 504 LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQS 578 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~ 578 (732)
..+|++++.|++|++||+...... .........+|.+|.|+|.|+.++ .|....++++||+++.+|...-. +.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999999864321 112222457899999999986655 77878899999999988876543 446
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CC-CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 655 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~-~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~ 655 (732)
.|+++.+++.++.+++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..+++|.+.++ .+
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence 799999999999999999999999999999999988764 54 4789999999999999988 999999999998 77
Q ss_pred EEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737 656 IHELSCTGN-----KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 727 (732)
Q Consensus 656 i~~~~~~~~-----~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~ 727 (732)
+.++.+.+. --+...|.....|++.-.+. +.+.-||.++...+ .-.+|.+.+..+.-+|.+.-++||+.|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 777766532 12445677777777766554 48999999998776 33489999999999999999999999999
Q ss_pred EEEeC
Q 004737 728 VKIWK 732 (732)
Q Consensus 728 I~IWD 732 (732)
+++|.
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99993
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=9.7e-28 Score=246.70 Aligned_cols=278 Identities=21% Similarity=0.328 Sum_probs=236.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC---CCeEEEEeCCCeEEEEecCCC
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~I~IWDl~s~ 524 (732)
-|.+.|.++... +++|++|++||.++|||. .|+....+.+|.++|.+++|.-. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889888887 779999999999999996 57889999999999999988543 236999999999999999876
Q ss_pred Ccee---EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-------------------------eeeeEEe-
Q 004737 525 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 575 (732)
Q Consensus 525 ~~~~---~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-------------------------~~i~~~~- 575 (732)
.... ....||...|.++...+++ ..+++|+.|..|.||+..+. .++..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5432 3345999999999999996 56669999999999993211 1122222
Q ss_pred ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737 576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 654 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~ 654 (732)
+...|.++.|++ ...+++++.|.+|++||+.++.++.++. ....++|+..+|..++|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 335688899988 6889999999999999999999988887 457899999999999999999 9999999999987777
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe-EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~t~~-~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|...|.++.|. ++.+|++|+.|..|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999998755 6678889999999999877 44 888999999999996 57799999999999997
Q ss_pred C
Q 004737 732 K 732 (732)
Q Consensus 732 D 732 (732)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-28 Score=271.83 Aligned_cols=246 Identities=21% Similarity=0.320 Sum_probs=205.1
Q ss_pred EEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--------------------------------C------
Q 004737 442 EFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F------ 482 (732)
Q Consensus 442 ~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--------------------------------~------ 482 (732)
..+.+. +|.+.|+|+.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344566 8999999999999999999999999999997644 0
Q ss_pred ----------------------eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737 483 ----------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 540 (732)
Q Consensus 483 ----------------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s 540 (732)
+++..+.+|.+.|.+|.|+.+ .+|++++.|++|++|++.... +++.|. |.+.|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeEE
Confidence 111224589999999999976 589999999999999999755 577776 9999999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C
Q 004737 541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H 618 (732)
Q Consensus 541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h 618 (732)
|+|+|.++++|++|+-||.|+||+|...+.+.-...+.-|++++|.|+|...++|+.+|.+++|+....+....+.- |
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999999999999999999999999999888888888899999999999999999999999999998766544321 1
Q ss_pred ------CCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEE
Q 004737 619 ------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETLE 688 (732)
Q Consensus 619 ------~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~--~~I~sl~fspdg~~L~sgs~dg~I~ 688 (732)
...|+.+.|.|.. ++|++..|..|+|||.++. ..+..+++.. ..-....|+.||++|++++.|..||
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 2279999998754 3666666999999999776 4444444332 3346678999999999999999999
Q ss_pred EEECC
Q 004737 689 LWNMT 693 (732)
Q Consensus 689 IwDl~ 693 (732)
||++.
T Consensus 572 iW~~~ 576 (712)
T KOG0283|consen 572 IWKND 576 (712)
T ss_pred EEeCC
Confidence 99974
No 57
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=238.02 Aligned_cols=276 Identities=21% Similarity=0.354 Sum_probs=229.9
Q ss_pred EEEEEcC--CCCEEEEEE-------CCCcEEEEEcCCCeEEEEe--ccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEec
Q 004737 454 ESCHFSP--DGKLLATGG-------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT 521 (732)
Q Consensus 454 ~~lafSp--dg~~Lasgs-------~Dg~I~VWd~~t~~~~~~l--~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl 521 (732)
+++.||| ++ +||++. ..|++.|.++...+-+..+ ..-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5688999 44 443332 3689999998644444333 235678999999995 567889999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCC-CCEEEEEEcCC
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR-LGRILAAAIEN 599 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~-g~~ll~~s~dg 599 (732)
.....++..++.|..+|.+++|++..+..+++++.|++|++|+......+.++..+. .|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 888889999999999999999999888888899999999999999999999988654 4888999995 46677888999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-C
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-P 676 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~ 676 (732)
.+++||++.......+..|...|.|+.|+... ..|++++ |+.|++||+++-. .++.++.+|+-.|..+.|||.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 99999999765555588899999999999854 5666777 9999999999865 5688889999999999999976 5
Q ss_pred EEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEeC
Q 004737 677 SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 732 (732)
Q Consensus 677 ~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spd-g~~LaSgs~DG~I~IWD 732 (732)
.|++++.|-+++|||....... +...|...|..+.|++- ..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 6778888889999999865544 66688999999999874 56999999999999996
No 58
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=262.72 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=204.7
Q ss_pred EECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCc-------eeEEeecCCcceE
Q 004737 468 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 539 (732)
Q Consensus 468 gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~-------~~~~l~~h~~~V~ 539 (732)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999996 78999999999999999976431 2346788999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 004737 540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 619 (732)
Q Consensus 540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~ 619 (732)
+++|+|++..++++++.|+.|++||+++++.+..+.+...+.+++|+++|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777789999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEeCCCCEEEEEe-CC----eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 620 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 620 ~~V~sl-----a~spdg~~Lasgs-Dg----~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+.+.+......+++.++++|..|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 3458888888877 54 7999999964322222333333444444555667888999999999999
Q ss_pred EECCCCeEEEE--ccCCCCeeEEEEeCCCC
Q 004737 690 WNMTENKTLTL--SAHDKLVSSLAASTVNG 717 (732)
Q Consensus 690 wDl~t~~~~~~--~~h~~~V~sla~spdg~ 717 (732)
|++..+....+ ..+..++.+++|.|+..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEccccc
Confidence 99988765432 34667889999999753
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=256.04 Aligned_cols=288 Identities=17% Similarity=0.261 Sum_probs=233.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE----EEEe-ccCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~I 516 (732)
....+.+|+..|.++++.|.|-.|++|+.|.+|++||...... .+.+ ......|.++.|++.+..|++.+....+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3456889999999999999999999999999999999875322 2222 2334569999999999999999999999
Q ss_pred EEEecCCCCce-----------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecc------C
Q 004737 517 RVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ------S 578 (732)
Q Consensus 517 ~IWDl~s~~~~-----------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~------~ 578 (732)
+|+|-+..... ....+||...++|.+|+|+....+++|+.||++++||++..+ ...+++.. -
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99997743311 123568999999999999999999999999999999997643 34444421 2
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE---EEEEcCCCC--CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h~~--~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
.++.++|++++..|++|+.||.|.+||...... ...-..|.. .|+||.|++||++|++-+ |+++++||++..+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k- 397 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK- 397 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-
Confidence 378999999999999999999999999865422 233345776 899999999999999988 9999999999876
Q ss_pred ceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 653 GECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 653 ~~~i~~~~~--~~~~I~sl~fspdg~~L~sgs~------dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
+++....+ ...+-+.|+|||+.+.|++|.. .+.+++||..+...+ .+.-....|..+.|+|.-+.|+.++
T Consensus 398 -kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 398 -KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred -cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 44444433 3455688999999999998864 458999999998877 6666688899999999999999999
Q ss_pred CCCeEEEe
Q 004737 724 HDKCVKIW 731 (732)
Q Consensus 724 ~DG~I~IW 731 (732)
.||.++||
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999986
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.7e-27 Score=266.81 Aligned_cols=270 Identities=24% Similarity=0.420 Sum_probs=241.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 526 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~ 526 (732)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 467788999998 55899999999999999999999888 99999999999998878899999999999999998877
Q ss_pred eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 605 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD 605 (732)
+...+.+|.+.|.++... ..++++|+.|.+|++|++.++.++..+. +...|.++.+. +..+++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 588999999999999987 4577789999999999999999999999 77789999988 68999999999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d 684 (732)
+.+++++..+.+|...|+++.+... .++++|+ |++|++||+++.. +|+..+..|..-+..+.+ .+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 7888888 9999999998864 688889888888855544 56789999999
Q ss_pred CeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 685 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 685 g~I~IwDl~t~~~~-~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.|++||.++++++ .+.+ |...|+++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 66889988876 46788999999999997
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.2e-26 Score=275.96 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=212.8
Q ss_pred CCCCceeeeeecCCC----cee-EEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceE
Q 004737 423 DPRDRVGRSAEVGKG----FTF-TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 496 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g----~~~-~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~ 496 (732)
.+.|..+++|+.... ... ..+..+. +...|.+++|++ ++.+||+++.|++|+|||+.+++.+..+.+|.+.|+
T Consensus 501 gg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~ 579 (793)
T PLN00181 501 AGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579 (793)
T ss_pred EeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE
Confidence 345666777775431 110 1122233 346799999987 578999999999999999999999999999999999
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE
Q 004737 497 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF 574 (732)
Q Consensus 497 ~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~ 574 (732)
+++|+| ++.+|++|+.|++|++||+.++. .+..+..+ ..|.++.|++....++++|+.|+.|++||+++.. .+..+
T Consensus 580 ~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~ 657 (793)
T PLN00181 580 SIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657 (793)
T ss_pred EEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence 999997 78999999999999999998765 35556544 6799999976656788899999999999998765 34444
Q ss_pred e-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Q 004737 575 K-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646 (732)
Q Consensus 575 ~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWD 646 (732)
. +...|.++.|. ++..+++++.|+.|++||++. ..++..+.+|...+.+++|++++.+|++|+ |+.|++|+
T Consensus 658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 4 44578999997 678999999999999999974 356788999999999999999999999999 99999999
Q ss_pred CCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 647 IGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 647 l~t~~~~~~--------i--~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
......... + .....+...|.+++|++++..|++++.+|.|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 865421100 0 011234566999999999999999999999999996
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=260.00 Aligned_cols=247 Identities=18% Similarity=0.305 Sum_probs=219.7
Q ss_pred eEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 483 TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....++++|.+|..+|..++|+.+|..+| +++.|+.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~lK 283 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFLK 283 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceeee
Confidence 55678889999999999999 8899999999999999999987778999999999999999999987777 889999999
Q ss_pred EEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C
Q 004737 562 YWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 639 (732)
Q Consensus 562 iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D 639 (732)
+||+++|+++..+.....+.|+.|.|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..|.|-++|+.+++.+ |
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999999999999999999998 7889999999999999999999999988999999999999999999999 8
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEccCC--CCeeEEEEe
Q 004737 640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAAS 713 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~----~~~~h~--~~V~sla~s 713 (732)
+.++||+.+.+...+.+.. .+.....+|..+|.++++++-+.|..|.+|.+...-.+ .+.+|. +.-..+.||
T Consensus 364 ks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred ccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 8999999988743333332 23445678999999999999999999999987654333 566774 566788999
Q ss_pred CCCCEEEEEECCCeEEEeC
Q 004737 714 TVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 714 pdg~~LaSgs~DG~I~IWD 732 (732)
|||++|++|+.||.|.+||
T Consensus 442 pDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CCCCeEEeecCCccEEEee
Confidence 9999999999999999997
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=229.75 Aligned_cols=258 Identities=23% Similarity=0.310 Sum_probs=226.9
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
.-+.|+++|+|+..+|. .++++.+|...|..++.+.|...|++|+.|..|.+||+++|+..+.+.+|.+.|+.++|+
T Consensus 34 tcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred EcCCCceEEeecccccc---eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 45678999999999885 567899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe
Q 004737 502 PSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 580 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i 580 (732)
.+...+++|+.|.++++||.++.. .++..+....+.|.++... +..|++|+.||+++.||++.|.....+- ..+|
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pi 186 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPI 186 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhc-CCcc
Confidence 999999999999999999998654 3567788888999999998 5677799999999999999988765543 3789
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEE--EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~--sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
++++|+++++..++++.|+.|++.|-++++.+..+++|...-. ..+++.....+++|+ ||.|++||+... ..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~s 263 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQIS 263 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeee
Confidence 9999999999999999999999999999999999999977543 456777788899999 999999999887 6777
Q ss_pred EeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 658 ELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 658 ~~~~~~~~-I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
.+..+... +..+.++|.-..++++...+ +.+|
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 77777777 89999999988777776554 4455
No 64
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.2e-26 Score=257.56 Aligned_cols=265 Identities=15% Similarity=0.228 Sum_probs=211.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-------------EEeccCCCceEEEEEcC-CCCeEEEEeCCCe
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRT 515 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~ 515 (732)
-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 344666677777666777777777777775443322 23678999999999999 8899999999999
Q ss_pred EEEEecCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCC
Q 004737 516 VRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR 588 (732)
Q Consensus 516 I~IWDl~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~ 588 (732)
|+|||+.+.. ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+.. ...|.+++|+|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 9999997643 246678899999999999998778899999999999999999998888764 456999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEeCCCCEEEEEe-----CCeEEEEECCCCCCceeEEEeec-
Q 004737 589 LGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC- 661 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-V~sla~spdg~~Lasgs-----Dg~I~IWDl~t~~~~~~i~~~~~- 661 (732)
+..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ |+.|++||+++... .+.....
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d 257 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLD 257 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccC
Confidence 999999999999999999999999899888765 45678898877777643 67999999987542 3333322
Q ss_pred CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCC
Q 004737 662 TGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 716 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg 716 (732)
....+....|++++.+|++++ .|+.|++||+.+++.+.. ..+..++..++|.|..
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 234566678999999999888 499999999999887732 2455678888888854
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=249.89 Aligned_cols=279 Identities=17% Similarity=0.317 Sum_probs=235.5
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 443 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
+..+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|++|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 56679999999999999977 6899999999999999999999999999999999999976 67899999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEE-EEcCC
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA-AAIEN 599 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~-~s~dg 599 (732)
+.+ +++++.+ ...+..|+-+.. ...+++|+. .|.|||..-..++..+... ..+.++.|+|-...|++ ++.|+
T Consensus 137 ~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 137 DGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred cCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 863 4666664 445777776654 467778864 5999999888888888753 55899999997666554 55899
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
.|.+||++...++..+. -.-.-+.|||+|....+++++ |..++.||++... ..+.....|.+.|..+.|+|.|.-+
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchh
Confidence 99999999998876654 344567899999777777777 8899999998765 5677788899999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 679 LVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~~~~~~~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++|+.|.+|+||.+..+....+. .--..|.|+.||.|.+||++|++|+.|++|+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999888766322 2345799999999999999999999999996
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.2e-27 Score=248.28 Aligned_cols=277 Identities=19% Similarity=0.274 Sum_probs=240.9
Q ss_pred CCCCeEEEEEcCCCCE-EEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737 449 STSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 527 (732)
Q Consensus 449 H~~~V~~lafSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~ 527 (732)
-.+.|.+++|+|...+ +|+.+ .-.|.||+..+.....++......|++++|..||++||+|...|.|+|||+.+ ...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence 3457999999996654 44433 36899999999888888888889999999999999999999999999999654 456
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC-EEEEEEcCCeEEEEE
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILD 605 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~ll~~s~dg~I~IwD 605 (732)
++.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +...|.|.+|+|... .+++|+.||.|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 889999999999999999999999999999999999999888654444 445699999999766 577889999999999
Q ss_pred CCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737 606 VETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 606 l~t~-~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d 684 (732)
++.. ..+.++. |..+|..+.+-|.|..|++++...|+|||+.++. +.+.....|...|+|+++..++..|++++-|
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeecccc
Confidence 9987 6666665 9999999999999999999999999999999764 4455555588999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 685 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 685 g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+.|++||+.+.+.+.--.-.++|.+|+.+|++..++.|-.||.+.+
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 9999999988888866678899999999999999999999998754
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=9.7e-27 Score=266.34 Aligned_cols=281 Identities=20% Similarity=0.293 Sum_probs=237.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEEcCC------------CeEEEEeccCCCceEEEEEcCCCCeEEEEeC
Q 004737 447 PASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 512 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs--~Dg~I~VWd~~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 512 (732)
..+...|.+++.+|||..+|+|+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||.+||+|+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34456699999999999999999 999999998652 2334566789999999999999999999999
Q ss_pred CCeEEEEecCC----CC-------------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737 513 DRTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 513 Dg~I~IWDl~s----~~-------------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~ 575 (732)
|+.|.||+... .. ..+..+.+|...|..++|+|++ .++++++.|++|.+||..+.+++.+++
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence 99999999872 11 2456789999999999999985 788899999999999999999999888
Q ss_pred c-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEeCCCCEEEEEe--CC---eEE
Q 004737 576 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVR 643 (732)
Q Consensus 576 ~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------~~V~sla~spdg~~Lasgs--Dg---~I~ 643 (732)
. .+.|..+.|+|-|++|++-+.|++|+||++.+......+.++. ..+..+.|+|||.||++.. .+ ++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 5 4569999999999999999999999999988876666665543 3578899999999999976 33 788
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCC-------------C----CEEEEEEcCCeEEEEECCCCeEEEE--ccCC
Q 004737 644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPT-------------F----PSLLVIGCYETLELWNMTENKTLTL--SAHD 704 (732)
Q Consensus 644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd-------------g----~~L~sgs~dg~I~IwDl~t~~~~~~--~~h~ 704 (732)
|.+-.+. ++-..+.+|..++.++.|+|. . ..+++|+.|++|.||.....+++.. .-..
T Consensus 249 IieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 249 IIERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 8887665 667788899999999999873 1 1578889999999999988877733 2346
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 705 KLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 705 ~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
..|.+++|+|||..|+.|+.||+|.+.
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 789999999999999999999999875
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=4.8e-28 Score=236.68 Aligned_cols=250 Identities=19% Similarity=0.239 Sum_probs=225.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
=+.++.+|++.|+.+++..+....|+++.|-+.+|||.-+|..++.|. |..-|..++|+.|.++|++|+.++.++|||+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 367899999999999999999999999999999999999999999985 8889999999999999999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
...+.+...+.+|.+.|..+.|+..+..+| +++.|++||+||.+++..+..+....+++++.++++|. +++....+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCcee
Confidence 999888899999999999999998766666 66889999999999999999999999999999999955 5666777899
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE-eecCCCceEEEEEeCCCCEEE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~-~~~~~~~I~sl~fspdg~~L~ 679 (732)
.+||..+...+..++ -...|.+...+|+..++++|+ |..++.||+.++ ..+.. .++|.++|.|+.|+|+|...+
T Consensus 208 ~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred EEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceee
Confidence 999999988887776 567799999999998888888 899999999998 44444 478999999999999999999
Q ss_pred EEEcCCeEEEEECCCCeEE
Q 004737 680 VIGCYETLELWNMTENKTL 698 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~~~ 698 (732)
+|+.||+|++|.+..++..
T Consensus 284 sGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ccCCCceEEEEEecCCCch
Confidence 9999999999998766544
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=244.29 Aligned_cols=267 Identities=19% Similarity=0.276 Sum_probs=230.2
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRF 500 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~f 500 (732)
....|.+.-+|.+.....+..+.++.+|..+|..+.||||.+||++|+.|..+++||+.+|+..+.+. +|...+.+++|
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 34556777788877777788899999999999999999999999999999999999999999988774 34678999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 579 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~ 579 (732)
.|||..+++|+.|++|..||++... .....+- ...|.+++..+||+.+++++ .|..|++|+.++......+..+.+
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~ 397 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQP 397 (519)
T ss_pred ccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCc
Confidence 9999999999999999999998643 3333332 25699999999998888555 699999999998888878888899
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGEC 655 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~--~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~ 655 (732)
++++.++.+++++++.-.+..|.+||++..+.+..+.+|+- .|..-||.- +..++++|+ |+.|+||+..++ +.
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kl 474 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KL 474 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ce
Confidence 99999999999999999999999999998888888888865 344456654 458999999 999999999988 89
Q ss_pred EEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC
Q 004737 656 IHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 656 i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t 694 (732)
+.++.+|...|++++|+|.. ..+|+++.||+|+||....
T Consensus 475 l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 475 LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999999976 5578888999999997654
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=241.46 Aligned_cols=276 Identities=24% Similarity=0.366 Sum_probs=242.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
..|+++...+....+++|+.|..+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 458888888887899999999999999999999999999999999999999999999999999999999998765 4667
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVE 607 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~ 607 (732)
...|..+|+.+..+|.|++++ +++.|++..+.|++++.++...... -.+++.+|+|||..|.+|..|+.|+|||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 788999999999999986666 8899999999999999998877764 348999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 004737 608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 685 (732)
Q Consensus 608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg 685 (732)
....+..|.+|.++|..|+|+.+|.||++++ |+.|++||++..+ .+.++.. ....+.++.|.+.|.+|++++.+=
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 9999999999999999999999999999999 7789999999874 3333332 234699999999999999998877
Q ss_pred eEEEEECCCCe--EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 686 TLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 686 ~I~IwDl~t~~--~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.|++++-.+.. .+ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 77777755443 33 566788899999999999999999999998886
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-26 Score=237.91 Aligned_cols=262 Identities=21% Similarity=0.344 Sum_probs=223.5
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEEcCCCeEE----EEeccCCCce
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLWCTESFTVK----STLEEHTQWI 495 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~---~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V 495 (732)
...|..+|+|+... .....+.||.++|.+++|..... .|++++.|.++++|-++.++.. ....+|...|
T Consensus 121 gsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 121 GSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred eecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 44577788887544 35778999999999888865333 5999999999999998876543 3345999999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEecCCC------------------------CceeEEeecCCcceEEEEEcCCCCcEE
Q 004737 496 TDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLL 551 (732)
Q Consensus 496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~------------------------~~~~~~l~~h~~~V~sl~fspdg~~ll 551 (732)
-+|+..+++..+++|+.|.+|+||+..+. +.++.++.+|..+|.++.|++ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 99999999999999999999999993311 124567889999999999998 4678
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEe
Q 004737 552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWN 628 (732)
Q Consensus 552 aSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~s 628 (732)
++++.|.+|+.||+.++.++..+.......++.++|....|++|+.|..|++||.+++ .....+.+|.+.|.++.|+
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 8999999999999999999999999999999999999999999999999999999986 4567788999999999999
Q ss_pred CCCCE-EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 629 TSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 629 pdg~~-Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
|...+ |++++ |+++++||+++.. ..+..+..|...|.++.|... ..|++|+.|.+|+|+...
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence 98765 55566 9999999999873 478899999999999999855 469999999999998643
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=256.92 Aligned_cols=259 Identities=23% Similarity=0.409 Sum_probs=221.6
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
..++++||..-+. .+..|..|.++|..++|+|.+.++++|+.|.+|+||+.++.+++.++.+|-+.|..+.|++.-.
T Consensus 30 sG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred Cceeeeehhhhhh---HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc
Confidence 4567788765553 4556889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe----------------
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------------- 569 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---------------- 569 (732)
+|+++|.|-+|+||+..+.+ ++..+.||...|+|..|+|. +.++++++-|-+|||||+..-+
T Consensus 107 WIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred eEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 99999999999999999876 69999999999999999997 4788899999999999985210
Q ss_pred -----------ee--eEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEeCCCCE
Q 004737 570 -----------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEY 633 (732)
Q Consensus 570 -----------~i--~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~V~sla~spdg~~ 633 (732)
++ ..+. +..+|..++|+|.-..|++|+.|..|++|.....+ .+-+..+|.+.|.++-|+|...+
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 11 1222 34568999999998999999999999999987543 45567899999999999999999
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 634 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
|++.+ |++|+|||+... ..+..+......++.++.+|..+. ++++.|+.+.||.++
T Consensus 265 IlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNL-fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNL-FAAGHDSGMIVFKLE 321 (1202)
T ss_pred eEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcce-eeeecCCceEEEEEc
Confidence 99988 999999999877 788888888899999999999984 445555555555554
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=252.02 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=231.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec-
Q 004737 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 533 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~- 533 (732)
-+.|+. ...||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 367773 44667665 46899999999987766666689999999999999999999999999999998664 677777
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 611 (732)
Q Consensus 534 h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~ 611 (732)
|...|-+++|. ..++.+|+.|+.|.++|++..+.... +. +...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999999 46788999999999999998765544 44 445699999999999999999999999999988899
Q ss_pred EEEEcCCCCCEEEEEEeCC-CCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 004737 612 RLKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 685 (732)
Q Consensus 612 i~~l~~h~~~V~sla~spd-g~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~--dg 685 (732)
...+..|...|.+++|+|- ..+||+|+ |++|++||..++ ..+..+. .+..|.++.|++..+-|+++.. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999999999995 56777766 899999999987 5555443 4788999999999987777654 44
Q ss_pred eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 686 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 686 ~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.|.||++.+.+.+ .+.+|...|..++++||+..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.6e-27 Score=261.10 Aligned_cols=246 Identities=19% Similarity=0.319 Sum_probs=202.9
Q ss_pred EEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC--------------------------------CC-----
Q 004737 484 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD----- 525 (732)
Q Consensus 484 ~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s--------------------------------~~----- 525 (732)
....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999998764 00
Q ss_pred ----------------------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEE
Q 004737 526 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 583 (732)
Q Consensus 526 ----------------------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v 583 (732)
.++..|.||.+.|..|.|+.+ ++|++++.|.+|++|++...+|+.+|.|..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 124457789999999999976 56779999999999999999999999999999999
Q ss_pred EEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-
Q 004737 584 RFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS- 660 (732)
Q Consensus 584 ~~sp-~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~- 660 (732)
+|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ +|.+++|+....+.....+...
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 66889999999999999998877665444 447899999999999999999 9999999998763211111111
Q ss_pred ----cCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEE-EEccCC--CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 661 ----CTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 661 ----~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~~~~-~~~~h~--~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.....|+.+.|.|... .+++.+.|..|+|||.++..++ .+.++. ..-....|+.||++|+++++|..|+||+
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 1123799999998654 5999999999999999888777 555443 2345668899999999999999999996
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4e-26 Score=228.94 Aligned_cols=270 Identities=18% Similarity=0.298 Sum_probs=222.5
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCC-CeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 448 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 448 ~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
...+.|.+|+||| ...+++.++.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567799999999 555677899999999999986 3333 445679999999999999999999999999999999997
Q ss_pred CceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
. ...+..|.++|.++.|-+.. ..+|++|+.|++|++||.+....+..+..++.+.++..-. ..++++..+..|.+
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV 180 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence 5 67788899999999998753 3478899999999999999999999999888888776644 46888899999999
Q ss_pred EECCCCeEEEE-Ec-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC---------CceEEEEE
Q 004737 604 LDVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCVF 671 (732)
Q Consensus 604 wDl~t~~~i~~-l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~---------~~I~sl~f 671 (732)
|+++.+..... +. .-+-.++||+...|....+.|+ +|.+.|..+..+.. ..-..+++|. ..|++++|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence 99987643222 21 1234688999999888888888 99999999887533 3344555554 24788999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737 672 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 672 spdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg 722 (732)
+|....|++++.||++.+||-.....+ ....|..+|++++|+.+|.++|-+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999999999999998776555 667899999999999999987755
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=231.00 Aligned_cols=289 Identities=19% Similarity=0.312 Sum_probs=245.5
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 518 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 518 (732)
.+..++.+.||++.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 55677889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EecC------C---------------------------------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737 519 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 559 (732)
Q Consensus 519 WDl~------s---------------------------------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~ 559 (732)
|... . -..++..+.+|...|.+..|...+..+ ++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~-vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM-VTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee-eeeecccc
Confidence 9621 0 012345688999999999999876555 49999999
Q ss_pred EEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737 560 IRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasg 637 (732)
..+||+++++.+..+..+. ..+.++-+|..+.+++.+.|.++++||++.. ..+..|.+|...|+++.|..+.+ ++++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 9999999999999888554 4777888898888999999999999999864 56778999999999999987765 4556
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----EccCCCCeeEEE
Q 004737 638 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA 711 (732)
Q Consensus 638 s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~-----~~~h~~~V~sla 711 (732)
+ |.+|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||+...++.. -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 8899999999864 3444444 46788999999999988888888899999999887663 348999999999
Q ss_pred EeCCC--CEEEEEECCCeEEEeC
Q 004737 712 ASTVN--GMVASASHDKCVKIWK 732 (732)
Q Consensus 712 ~spdg--~~LaSgs~DG~I~IWD 732 (732)
|..+. .-|++|+.|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 98654 3688999999998885
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=254.94 Aligned_cols=260 Identities=22% Similarity=0.423 Sum_probs=228.0
Q ss_pred CCCCCceeeeeecCCCceeEEEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~-l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
....+.++++|+...+.. +.. +.||.+.|.+++|..-+.+|++|+.|.+++|||+.++++...+.+|.+.|.++..
T Consensus 223 ~~s~~~tl~~~~~~~~~~---i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYL---ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI 299 (537)
T ss_pred ecCCCceeEEeecccceE---EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence 345567778898877753 444 9999999999999887889999999999999999999999999999999999988
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CC
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 579 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~ 579 (732)
.+ .++++|+.|.+|+||++.++. .+..+.+|.++|.++.++ ..++++|+.|++|++||+.++++++.+..+ ..
T Consensus 300 ~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 300 DP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred cC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 54 478889999999999999876 588888899999999998 467889999999999999999999999864 45
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-|.++.+ .+++|++++ |++|++||..++ .++.
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~ 447 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLR 447 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceee
Confidence 888877766 89999999999999999999 999999999998866654 567888888 999999999988 7888
Q ss_pred Eeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 658 ELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 658 ~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.+.. +...|..+++. ...+++++.++.+++||++++...
T Consensus 448 ~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 448 TLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8877 56778877776 466999999999999999999877
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.6e-27 Score=253.03 Aligned_cols=270 Identities=23% Similarity=0.421 Sum_probs=234.4
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCe------EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEee
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFT 532 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~ 532 (732)
|.++||++||.||.|++|++.... ....++.|.++|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 367789999999999999986422 356778999999999999999999999999999999998764 5678899
Q ss_pred cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEe----------ccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~----------~~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
.|.+.|.|+++-...+.++++|+-|+.|.+||++++. .+..+. ....+.+++.++.+..|+.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999954457899999999999999999873 222221 2345889999999988999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+... +|+.++..|...|+++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 99999999999999999999999999999999999988 999999999877 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 680 VIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~-~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|+.|+.|+.-|+.+. +...+...+.+|..+..+....-+.+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999984 3445556777888888876655567788899999884
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.4e-26 Score=240.06 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=212.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCC
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s 523 (732)
++....+.|++++|..||++||+|+..|.|+|||..+...+..+.+|..+|..+.|+| ++..|++|+.|+.+++||+.+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3445567899999999999999999999999999777667788899999999999999 566788999999999999998
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.. ....+.+|++.|.|.+|+|....++++|+.||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++ .+.|+
T Consensus 143 a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 143 AY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred cE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 66 466889999999999999998899999999999999999987 7888899999999999999977776654 47899
Q ss_pred EEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 603 ILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 603 IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
|||+-+| +.+..+..|...|+|+++..++..|++++ |+.|++||+.+. +.++.+. ..++|.+++.+|++..+++
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEE
Confidence 9999966 55555556999999999999999999999 999999998765 6677665 4688999999999999999
Q ss_pred EEcCCeEEEEECC
Q 004737 681 IGCYETLELWNMT 693 (732)
Q Consensus 681 gs~dg~I~IwDl~ 693 (732)
|..+|.+.+-+..
T Consensus 297 GmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 297 GMSNGLVSIRRRE 309 (487)
T ss_pred ecccceeeeehhh
Confidence 9999987776443
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=224.77 Aligned_cols=241 Identities=24% Similarity=0.363 Sum_probs=216.2
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD 564 (732)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++...... ..+.+|.+.|..++|+|....++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4456899999999999999999999999999999998764322 256789999999999999999999999999999999
Q ss_pred CCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737 565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 643 (732)
Q Consensus 565 l~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~ 643 (732)
++.+++...+....+-..+.|+|+|.+++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988776655 456788899987777666655 79999
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737 644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg 722 (732)
|...... +.+..+..|.....|+.|+|+|+++++|+.|..+.+||+.+.-++ .+..++-+|..+.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998866 788899999999999999999999999999999999999998777 666899999999999999999999
Q ss_pred ECCCeEEE
Q 004737 723 SHDKCVKI 730 (732)
Q Consensus 723 s~DG~I~I 730 (732)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99998865
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=240.62 Aligned_cols=259 Identities=22% Similarity=0.350 Sum_probs=221.6
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp 502 (732)
.+.|+.+.+|++..+. ...+.++.+..+.|+++.|.++++++++++.|+.+++|++.......++.+|.+.|+++.|.-
T Consensus 193 gg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~ 271 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL 271 (459)
T ss_pred cchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc
Confidence 4456666777765543 556788999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeE
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 582 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~ 582 (732)
....+++|+.|.+|++||+....+ .+++. ....+..|+.. ...+++|-.|+.|++||++...+.......+.|++
T Consensus 272 ~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtS 346 (459)
T KOG0288|consen 272 SHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTS 346 (459)
T ss_pred cccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceee
Confidence 777799999999999999998553 44333 23446666665 34667999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC----CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h----~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
+..++++..+++++.|..+.++|+++......+... ....+.++|+|++.|+++|+ ||.|+||++.++ ++..
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~ 423 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEK 423 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEE
Confidence 999999999999999999999999998877766532 23578899999999999999 999999999998 5555
Q ss_pred EeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 658 ELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 658 ~~~~~~~--~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
.+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 5544443 59999999999999999999999999
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.9e-26 Score=221.60 Aligned_cols=256 Identities=20% Similarity=0.302 Sum_probs=210.0
Q ss_pred eecCCCceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcC-CCeEEEEeccCCCceEEEEEcC-CCCeEE
Q 004737 432 AEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLA 508 (732)
Q Consensus 432 wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~V~~l~fsp-dg~~La 508 (732)
.+...+..+.+...+.- .+.+..++|++.. ..+++++.||+++|||+. ...++..+++|..+|.++.|++ ++..++
T Consensus 43 le~~~~~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 43 LEVTDPKGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred EecCCCCCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEE
Confidence 33333444445555543 3458999999954 578889999999999965 3467788999999999999998 566788
Q ss_pred EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEec-cCCeeEEEEe
Q 004737 509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQ 586 (732)
Q Consensus 509 sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~-~~~i~~v~~s 586 (732)
+++.|++|++|+...+. .+.++.+|...|....|+|...+++++++.|+++++||++.. +.+. +.. ...+.++.|+
T Consensus 122 tsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWS 199 (311)
T ss_pred eeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeeccc
Confidence 99999999999998766 588999999999999999999999999999999999999864 4444 554 4589999998
Q ss_pred CC-CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737 587 PR-LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT 662 (732)
Q Consensus 587 p~-g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~ 662 (732)
.- ...+++++.|+.|++||++.- .++..+.+|.-.|+.|+|+|.. .+|++++ |=+++|||..... .++.+...|
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~H 277 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHH 277 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhcc
Confidence 74 456778888999999999975 6788899999999999999974 5778888 9999999998553 456666677
Q ss_pred CCceEEEEEeC-CCCEEEEEEcCCeEEEEEC
Q 004737 663 GNKFHSCVFHP-TFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 663 ~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl 692 (732)
..-+..+.|++ +..+++.++-|+.++||+-
T Consensus 278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEeccccccccCceeeecccccceeeecc
Confidence 88888888887 4567999999999999983
No 83
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.6e-24 Score=242.98 Aligned_cols=227 Identities=18% Similarity=0.276 Sum_probs=184.1
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCceEEEEEcCCC-CeEEEEeCCC
Q 004737 444 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 514 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg 514 (732)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3467788999999999999975 6999999999
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEE
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 592 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l 592 (732)
+|+|||+.++. .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+..+.. ...+.|.+++..+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999875 467788899999999999996 5677999999999999999998888775543 4567888988888
Q ss_pred EEEE----cCCeEEEEECCCCe-EEEEEcCC-CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec-CC
Q 004737 593 LAAA----IENYISILDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 663 (732)
Q Consensus 593 l~~s----~dg~I~IwDl~t~~-~i~~l~~h-~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~-~~ 663 (732)
++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ |+.|++||+.++. .+..... ..
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 8765 37899999998754 33333323 34566678899999888776 8999999999873 3333322 34
Q ss_pred CceEEEEEeCCC
Q 004737 664 NKFHSCVFHPTF 675 (732)
Q Consensus 664 ~~I~sl~fspdg 675 (732)
.++..++|.|..
T Consensus 304 ~~~~g~~~~pk~ 315 (493)
T PTZ00421 304 EPHKGLCMMPKW 315 (493)
T ss_pred CCCcceEecccc
Confidence 567788888854
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=8.3e-24 Score=223.37 Aligned_cols=264 Identities=13% Similarity=0.111 Sum_probs=207.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 540 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s 540 (732)
++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.++.. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 35788999999999999999998888876544 6789999999876 5667889999999998663 44444443 3578
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCC
Q 004737 541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 619 (732)
Q Consensus 541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~ 619 (732)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+..++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999988777777788999999999988888777656678899999999999888765 57788999887766554 23
Q ss_pred CCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 004737 620 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 689 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~-------~~~I~sl~fspdg~~L~sg-s~dg~I~I 689 (732)
..+.+++|++++.+|++++ ++.|++||+.++ +++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999987 343333211 1123568899999986665 45668999
Q ss_pred EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEeC
Q 004737 690 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 732 (732)
Q Consensus 690 wDl~t~~~~~~~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWD 732 (732)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887544556689999999999999886 4689999997
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.1e-25 Score=221.12 Aligned_cols=267 Identities=19% Similarity=0.304 Sum_probs=222.4
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC--eEEEEeCCCe
Q 004737 438 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT 515 (732)
Q Consensus 438 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~ 515 (732)
..+.....+..|.+.|+|++.+ +.|+|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 4556677789999999999995 89999999999999999999999989999999999999998765 8999999999
Q ss_pred EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737 516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~ 595 (732)
|.+|+...- ..+..+++|.+.|+.++++|.+ .+..+.+.|+.++.||+-.|+...........+.+.|+|.|.+|+++
T Consensus 109 i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 109 IIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred EEEEEcCCe-EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 999999975 4688999999999999999996 55667788999999999999988888877777889999999988777
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEE--eC
Q 004737 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HP 673 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f--sp 673 (732)
.. ..|-||.+++......+. ....+.|+.|...+.+++.+.|+.|++||..+. .+...+..|..+|-.+.+ .|
T Consensus 187 ~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 187 GR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred ec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecC
Confidence 65 568899988876665554 335678888875554444444889999999885 788899999999999884 46
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-----eEEEEccCCCCeeEEEEe
Q 004737 674 TFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 713 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~-----~~~~~~~h~~~V~sla~s 713 (732)
++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred CceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 7889999999999999999876 333333446677777653
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.4e-25 Score=220.37 Aligned_cols=285 Identities=19% Similarity=0.273 Sum_probs=214.3
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEec--cCCCceEEEEEcCCCCeEEEE-eCCCeEE
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE--EHTQWITDVRFSPSLSRLATS-SADRTVR 517 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~--~h~~~V~~l~fspdg~~Lasg-s~Dg~I~ 517 (732)
+..+++|.+.|+|++|+.||++||+++.|++|+||++++++.. +.++ -.-+..+.++|.||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999999875332 1111 112356889999997755544 4556899
Q ss_pred EEecCCCC---cee--------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEE
Q 004737 518 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRF 585 (732)
Q Consensus 518 IWDl~s~~---~~~--------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~ 585 (732)
+|.+...+ ... .....|.-.|..+-.... ..+|++++.|..|.+|+++ |+.+..+... ......+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99875321 111 122335556666665544 5778899999999999999 8888777643 34667899
Q ss_pred eCCCCEEEEEEcCCeEEEEECCC---C-----eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC----CC
Q 004737 586 QPRLGRILAAAIENYISILDVET---Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 652 (732)
Q Consensus 586 sp~g~~ll~~s~dg~I~IwDl~t---~-----~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~----~~ 652 (732)
+|+|+++++++..-.|++|++-- | ..+..+++|...|..++|+++.+.+++.+ ||+++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 99999999999999999998642 2 34567899999999999999999999999 999999997532 11
Q ss_pred ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E-EccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 653 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 653 ~~~i~~~----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~-~~~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
.+.+++. ...+..-..+.++|.+..|++. ....|.+|..++++.. . ...|...|.+|+|+++|++++||+ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 1222222 2223444589999999965554 4557999999998877 3 347999999999999999999987 55
Q ss_pred eEEEe
Q 004737 727 CVKIW 731 (732)
Q Consensus 727 ~I~IW 731 (732)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 66664
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=6.1e-24 Score=236.41 Aligned_cols=304 Identities=16% Similarity=0.267 Sum_probs=245.4
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
.......+|++.++. .+.++.++...|+++.=+|-=..+|.|..+|+|.|++++..+.+.+|+...+.|+.++|..|
T Consensus 179 s~~G~lql~Nvrt~K---~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGK---VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred ecCCcEEEEEeccCc---EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence 445566899999885 57788999999999999998889999999999999999999999999855699999999999
Q ss_pred CCe-EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--------------
Q 004737 504 LSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------- 568 (732)
Q Consensus 504 g~~-Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-------------- 568 (732)
|.. +|+|+..|.+.+||++..+........|.+.|..+.|.|. ..++++++.|..+++|=.+++
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 875 5667777999999999766544444566666666666665 345556665665555422100
Q ss_pred --------------------------------------------------------------------------------
Q 004737 569 -------------------------------------------------------------------------------- 568 (732)
Q Consensus 569 -------------------------------------------------------------------------------- 568 (732)
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence
Q ss_pred ------------------ee-eeEEecc------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCC
Q 004737 569 ------------------SC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKN 620 (732)
Q Consensus 569 ------------------~~-i~~~~~~------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~ 620 (732)
.. ...+... ..+++++.+++|++.+.|...|.|.+|++.+|.....+ ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 00 0011111 23678899999999999999999999999999888888 47999
Q ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc--------------------------------------eeEEEeec
Q 004737 621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG--------------------------------------ECIHELSC 661 (732)
Q Consensus 621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~--------------------------------------~~i~~~~~ 661 (732)
+|++++.+.-++.+++++ +|.+++||+...... +.++.+.+
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 999999998898899888 999999999765310 01123557
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEe
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 731 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW 731 (732)
|.+.|+.++|||||++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8899999999999999999999999999999999999777788899999999999999999988 579998
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-23 Score=201.64 Aligned_cols=289 Identities=19% Similarity=0.263 Sum_probs=235.9
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------C---------eEEEEeccCCCceEEEEEcCC
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------~---------~~~~~l~~h~~~V~~l~fspd 503 (732)
.|..+.++. .+..|.+++|.|.|.+.|+|+..++++|.-... + -..+.-+.|.+.|+|.+|+|+
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 344444444 456799999999999999999999998874321 1 011233568999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCce----eEEeecCCcceEEEEEcCC---CCcEEEEEe-CCCcEEEEECCCCeeeeEEe
Q 004737 504 LSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~~~V~sl~fspd---g~~llaSgs-~Dg~I~iWDl~t~~~i~~~~ 575 (732)
|.+|++|+.|++|++..+....+. -..+.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 999999999999999877643321 2357779999999999753 455666654 57788888999998888887
Q ss_pred ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C-----CCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737 576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h-----~~~V~sla~spdg~~Lasgs-Dg~I~IWDl 647 (732)
.+.+-.-.-++-++-.+++++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|. |....+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 655533344566677889999999999999999988887653 2 25789999999999999999 889999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----EEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737 648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~-----~~~~~~h~~~V~sla~spdg~~LaSg 722 (732)
+.+ ..+..+..|...|.++.|+|...|+++++.|..|++-|+...- .+....|...+..+.|+|..-.+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 998 8899999999999999999999999999999999999986532 33666899999999999999899999
Q ss_pred ECCCeEEEe
Q 004737 723 SHDKCVKIW 731 (732)
Q Consensus 723 s~DG~I~IW 731 (732)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.9e-25 Score=239.09 Aligned_cols=274 Identities=16% Similarity=0.266 Sum_probs=231.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEeccCCCceEE-EEEcC-CCCeEEEEeCCCeEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTVR 517 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg~I~ 517 (732)
.-+.+.+|+..|..|++.++. .+++++.||+++||+-...+.+ +.+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 456789999999999987554 8999999999999997655443 456788888888 88886 555699999999999
Q ss_pred EEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEE
Q 004737 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 518 IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s 596 (732)
+|...... ++.++.+|...|.|++...++. +++|+.|.++++|.+. ++...+. |...|..+..-|++ .+++|+
T Consensus 85 v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgs 158 (745)
T KOG0301|consen 85 VFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGS 158 (745)
T ss_pred EEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEecc
Confidence 99999765 7899999999999999887753 6699999999999874 4555455 44568889988886 899999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737 597 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676 (732)
Q Consensus 597 ~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~ 676 (732)
.|..|++|.- ++++.+|.+|...|+.+++-+++.++.++.||.|++|++. + .++.++.+|.+-++++....++.
T Consensus 159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g---e~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G---EVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C---ceeeeeeccceEEEEEEecCCCC
Confidence 9999999976 6788899999999999999998877766669999999994 4 79999999999999999888888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEccCCC-CeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 677 SLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 677 ~L~sgs~dg~I~IwDl~t~~~~~~~~h~~-~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.++++++|++++||+.. ++.....|.. .|+++.+-++|. |++|++||.|+||
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 89999999999999977 5554444544 899999887775 6778899999998
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=237.03 Aligned_cols=307 Identities=15% Similarity=0.200 Sum_probs=247.9
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC-----------CCEEEEEECCCcEEEEEcCCCeEEEEe-----
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKSTL----- 488 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd-----------g~~Lasgs~Dg~I~VWd~~t~~~~~~l----- 488 (732)
.|..+-+||+.+-........+-.|..-|+.+.--|- ...+++++.|++|++||++.+..-.++
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 4677788888887777778888889988888876661 125899999999999998753211110
Q ss_pred --------------------------------ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCc
Q 004737 489 --------------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 536 (732)
Q Consensus 489 --------------------------------~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~ 536 (732)
.+..-.|.+++.+|++.+||+|..-|+++||++.+-.+ ......|..
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHes 502 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHES 502 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccc
Confidence 01234599999999999999999999999999997654 567788999
Q ss_pred ceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-CeeeeEEec-cCCeeEEEEeCCC--CEEEEEEcCCeEEEEECCCCe
Q 004737 537 TVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQV 610 (732)
Q Consensus 537 ~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~-~~~i~~v~~sp~g--~~ll~~s~dg~I~IwDl~t~~ 610 (732)
+|.|+.|+.- +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|...| ...++++.|..|.+--..+..
T Consensus 503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~ 582 (1080)
T KOG1408|consen 503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS 582 (1080)
T ss_pred eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence 9999999842 467899999999999999964 344555554 4669999998877 678888888887654433222
Q ss_pred EEEEEcC-----CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737 611 CRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 611 ~i~~l~~-----h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d 684 (732)
....+.. ....++.++..|..+++++++ |..|+|||+.+++..+.++.-..+++....+...|.|.||++.+.|
T Consensus 583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 1222221 235788999999999999999 9999999999996655555556677889999999999999999999
Q ss_pred CeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 685 ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 685 g~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++.+||..+++++ ...+|...|+.+.|.+|.+.|++.+.||.|.||+
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 99999999999999 8889999999999999999999999999999995
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.2e-24 Score=249.30 Aligned_cols=252 Identities=21% Similarity=0.331 Sum_probs=214.3
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------------------CeEEEEeccCCCceEEEEEcC
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~~~~l~~h~~~V~~l~fsp 502 (732)
..+.+...|.+.|+|+.|++||+|||+|++|+.|.||.... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45677889999999999999999999999999999998662 246778899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----- 577 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----- 577 (732)
++.+||+++.|++|.|||..+. ..++.+.+|.+.|..+.|.|-| .+||+-++|++|+||++.+..+.+.+..+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999998 5689999999999999999997 56779999999999998877777666532
Q ss_pred --CCeeEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC-----CC------------EE
Q 004737 578 --SGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GE------------YL 634 (732)
Q Consensus 578 --~~i~~v~~sp~g~~ll~~s~----dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd-----g~------------~L 634 (732)
.....+.|+|||.+|++... ...+.|.+..+.+.-..+-+|..++.++.|+|. .. .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 23678999999999988765 247999999999999999999999999999981 11 45
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 635 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 635 asgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
++|+ |++|.||........-.+ .......|..++|+|||..|++++.||+|.++.+++.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 6677 999999998665332222 23346789999999999999999999999999987654
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=226.55 Aligned_cols=275 Identities=20% Similarity=0.325 Sum_probs=227.2
Q ss_pred cCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc
Q 004737 400 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 479 (732)
Q Consensus 400 ~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~ 479 (732)
...|+.+|+.|+-++.|....+.... ...+..--.+--|..+|.|++||.|...||+|+.||.|+||.+
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred CCceEeeccccceeeeehhccchhhh-----------hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 33677777765555555322222111 1122222345568899999999999999999999999999999
Q ss_pred CCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737 480 ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 558 (732)
Q Consensus 480 ~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg 558 (732)
++|.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++ +++.+.+|...|+...|.++|..++ +++.||
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDg 370 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHII-SASSDG 370 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEE-EecCCc
Confidence 9999999996 899999999999999999999999999999999987 5899999999999999999986665 999999
Q ss_pred cEEEEECCCCeeeeEEecc---CCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEeCCC
Q 004737 559 EIRYWSINNGSCAGVFKCQ---SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSG 631 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~V~sla~spdg 631 (732)
+|++|+.++.+|+.+++.. -.|..+...|.. ..++++...++|+|.++. +..++.+.. ..+...+.+.+|.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 9999999999999988743 347777777754 568888888999999986 455555543 34567788899999
Q ss_pred CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 632 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 632 ~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
.++++.+ |+.++.|.+.++ ...+++..|+..+..++-+|..+.+++-+.||.+++|.
T Consensus 450 ewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999988 999999999988 67778888999999999999999999999999999994
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3e-24 Score=216.45 Aligned_cols=269 Identities=19% Similarity=0.268 Sum_probs=220.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
..+.|..+.|+|.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence 3567999999999899999999999999999987665555 4899999999987 4679999999999999999865 4
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 608 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t 608 (732)
..+..|...|.||.+++.. ..+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 6677799999999999874 56669999999999999987777777766777777664 57899999999999999998
Q ss_pred CeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCC---------CceEEEEEeCCC
Q 004737 609 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTG---------NKFHSCVFHPTF 675 (732)
Q Consensus 609 ~~~i~~l~--~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~---------~~I~sl~fspdg 675 (732)
........ .-+-.++||++.|++.-+++++ ||.|.+=.+..... ......+++|. .+|++++|+|-.
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 75544222 2345789999999887777777 99887766655411 12233455553 468999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737 676 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~ 724 (732)
..|++|+.||.|.+||+.+.+.+ .+...+..|..++|+.+|..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999998877 56566778999999999999999873
No 94
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.7e-23 Score=237.82 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=188.3
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCe--------EEEEeccCCC
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQ 493 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~--------~~~~l~~h~~ 493 (732)
.+.+..+++|+..+. ..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 445678889987765 356788999999999999996 7899999999999999997542 3446788999
Q ss_pred ceEEEEEcCCCCe-EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737 494 WITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 572 (732)
Q Consensus 494 ~V~~l~fspdg~~-Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~ 572 (732)
.|.+++|+|++.. |++++.|++|+|||++++.. ...+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 9999999998875 57899999999999998764 44444 567899999999975 56678889999999999999988
Q ss_pred EEeccCC-ee-----EEEEeCCCCEEEEEEcCC----eEEEEECCC-CeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe-
Q 004737 573 VFKCQSG-AT-----QMRFQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 573 ~~~~~~~-i~-----~v~~sp~g~~ll~~s~dg----~I~IwDl~t-~~~i~~l~--~h~~~V~sla~spdg~~Lasgs- 638 (732)
.+..+.. +. ...|+++++++++++.++ .|+|||++. ..++..+. .+.+.+......+++.++++|+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 8876543 22 223458889999988774 799999995 45554443 2333444444455688888887
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 639 Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
|+.|++|++..+. ...+..+. +..++.+++|.|..
T Consensus 284 D~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 9999999998752 22333333 55778889999975
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=215.20 Aligned_cols=259 Identities=18% Similarity=0.310 Sum_probs=207.5
Q ss_pred EEEEECCCcEEEEEcC------------CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737 465 LATGGHDKKAVLWCTE------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 532 (732)
Q Consensus 465 Lasgs~Dg~I~VWd~~------------t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~ 532 (732)
|++|++...|.-+++. +...+..+..|.++|++++. ++.++|+|+.|-+|+|||+.... .+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence 4555555555555433 12235567889999999999 58899999999999999999755 477788
Q ss_pred cCCcceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 533 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 610 (732)
Q Consensus 533 ~h~~~V~sl~fspdg~-~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~ 610 (732)
.|.+.|+++.|.+.-. .-|++|+.||.|.+|+....+++..++.+ +.|+.++++|.++..++.+.|+.++.||+-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998643 23449999999999999999999999854 459999999999999999999999999999887
Q ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 611 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 611 ~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
.-+.+.- ...-+.|.|+|.|.+++.+....|-||.+.+. ..+.++. ....+.++.|.. +..+++|+.|+.|.+|
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~-~~~r~l~~~~l~-~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIE-NPKRILCATFLD-GSELLVGGDNEWISLK 234 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhh-ccccceeeeecC-CceEEEecCCceEEEe
Confidence 6655542 22334599999999999999888999999875 2222222 224566666654 4569999999999999
Q ss_pred ECCCCeEE-EEccCCCCeeEEEE--eCCCCEEEEEECCCeEEEeC
Q 004737 691 NMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 691 Dl~t~~~~-~~~~h~~~V~sla~--spdg~~LaSgs~DG~I~IWD 732 (732)
|..+..+. .+.+|.+.|-++.+ .|++.+|+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987777 77799999999985 45678999999999999997
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5e-24 Score=224.21 Aligned_cols=273 Identities=20% Similarity=0.286 Sum_probs=223.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-E---E-------------e-ccCCCceEEEEEcCCC
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-S---T-------------L-EEHTQWITDVRFSPSL 504 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~---~-------------l-~~h~~~V~~l~fspdg 504 (732)
+..+..|.-.|+||+++||.+++++++.|++|.=|++.+++.. . + - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6778899999999999999999999999999999999887643 1 1 0 2688899999999999
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 583 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v 583 (732)
+|||+|+.|..|.||+.++.. .+..+.+|.+.|.+++|-.. ..-+++++.|..|++|++.....+.++. ++..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 999999999999999999876 57889999999999999865 4555688999999999998877665544 56778888
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-c
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C 661 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~ 661 (732)
........+-+++.|.++++|++.. .....+.++.+.+-|++|-.+.. +++|+ +|.|.+|++... +++.... .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KK---kplf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKK---KPLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeeccc---CceeEeecc
Confidence 8887777777777999999999944 33445677899999999986655 55566 999999999876 3333221 1
Q ss_pred C-----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----EEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737 662 T-----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 662 ~-----------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~----~~~~~~h~~~V~sla~spdg~~LaSg 722 (732)
| ..+|++++..|....+++|+.+|.|++|-+.++- ++.-..-.+.|++++|+++|+.|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 1 1389999999999999999999999999998882 22333567899999999999966655
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.2e-24 Score=233.58 Aligned_cols=259 Identities=20% Similarity=0.286 Sum_probs=221.7
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLS 505 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~ 505 (732)
..+-+|+..++... .+ ...+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +.
T Consensus 197 ~~vylW~~~s~~v~-~l--~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 197 QSVYLWSASSGSVT-EL--CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS 271 (484)
T ss_pred ceEEEEecCCCceE-Ee--EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--Cc
Confidence 45567777777532 22 223388999999999999999999999999999999999999988 99999999997 67
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMR 584 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~ 584 (732)
.+.+|+.|+.|.++|++.......++.+|...|..+.|++|+ ..+++|+.|+.|.|||....+....+. +...|..++
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 899999999999999998776556688999999999999996 677799999999999997666655554 567799999
Q ss_pred EeCCCC-EEEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEE
Q 004737 585 FQPRLG-RILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 585 ~sp~g~-~ll~~s--~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~ 658 (732)
|+|-.. .|++|+ .|+.|++||+.++..+..+. ....|.+|.|++..+-|+++. ++.|.||++.+. ..+..
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~ 426 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAE 426 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeee
Confidence 999654 455543 48999999999999888776 567899999999987666654 779999999886 78889
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+.+|...|..++++|||..+++++.|.++++|++-+.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999998764
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=238.51 Aligned_cols=307 Identities=16% Similarity=0.212 Sum_probs=250.0
Q ss_pred CCCCCceeeeeecCCCcee--E-EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEeccCCCceE
Q 004737 422 ADPRDRVGRSAEVGKGFTF--T-EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWIT 496 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~--~-~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~ 496 (732)
..++|..++.|+....... . .+..+..|.+.|+.++...+++.|++++.|-+|++|+.... -+..++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 5677888888887654332 2 36678999999999999999999999999999999999877 56788899999999
Q ss_pred EEEE-cCCCCeEEEEeCCCeEEEEecCCCCc---------eeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 004737 497 DVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565 (732)
Q Consensus 497 ~l~f-spdg~~Lasgs~Dg~I~IWDl~s~~~---------~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl 565 (732)
|+++ .++...+|+|+.|+.|.|||+.++.. ....+. ++..+|++++.++.+ .++++|+..+.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence 9999 88889999999999999999996521 122333 889999999999986 78889999999999999
Q ss_pred CCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737 566 NNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 643 (732)
Q Consensus 566 ~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~ 643 (732)
++++.+..+.. ...|.++..+.+|..+++++.||+|++||+...+|+.++..|...|+++..+|+-.++++|+ |+.|.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 99888877764 45699999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--------EE---------------
Q 004737 644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------TL--------------- 700 (732)
Q Consensus 644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--------~~--------------- 700 (732)
.=|+++......+. ....+|..+..+.+..-+.+++.|+.|+-|..+-...+ ..
T Consensus 281 ~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 281 RTDLRNPAKSTLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred ecccCCchhheEee---cCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 99999863322222 24567777777766655688888999999966432211 00
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 701 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 701 --~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
......|...+.-.|.++++|-..+|.+.+||
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 01112334444556778999999999999997
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=225.72 Aligned_cols=240 Identities=22% Similarity=0.322 Sum_probs=201.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 526 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~ 526 (732)
++|...|.|++.|+||+|||+|+.|..|.||+..+++.+..+.+|.+.|.+++|-.....|++++.|++|++|+++...+
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999997664
Q ss_pred eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 606 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl 606 (732)
+.++.+|.+.|..|....- ..++.+|+.|+++++|++.....+....+.+.+.|++|..+ .++++|+.+|.|.+|++
T Consensus 279 -vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 279 -VETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred -HHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 7889999999999998765 46777888999999999954443333334457889998876 88999999999999999
Q ss_pred CCCeEEEEEcC-C-----------CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEe
Q 004737 607 ETQVCRLKLQG-H-----------KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFH 672 (732)
Q Consensus 607 ~t~~~i~~l~~-h-----------~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fs 672 (732)
-+.+++++... | ..+|++++..|...++++|+ +|.|++|-+..+.. ...+..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99988876542 2 23899999999999999999 99999999988732 24455554 56789999999
Q ss_pred CCCCEEEEEEc-CCeEEEE
Q 004737 673 PTFPSLLVIGC-YETLELW 690 (732)
Q Consensus 673 pdg~~L~sgs~-dg~I~Iw 690 (732)
++|++++++.. ...+--|
T Consensus 435 ~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 435 NSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cCCCEEEEeccccccccee
Confidence 99997776643 3344334
No 100
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=214.16 Aligned_cols=277 Identities=20% Similarity=0.312 Sum_probs=220.7
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 532 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~ 532 (732)
-.||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|++.|..|.+||+..+. ++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999987 455554
Q ss_pred cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-c----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C----QSGATQMRFQPRLGRILAAAIENYISILDVE 607 (732)
Q Consensus 533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~----~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~ 607 (732)
...+|+.+.|+|...+.++++-.+..-.+.++..++....-. . .....+..|.+.|+++++|...|.+.+||.+
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 578999999999877777666555555566655422111111 1 1123345689999999999999999999999
Q ss_pred CCeEEEEEcCCC-CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------ceeEEEee--cCCCceEEEEEeCCCCE
Q 004737 608 TQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GECIHELS--CTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 608 t~~~i~~l~~h~-~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------~~~i~~~~--~~~~~I~sl~fspdg~~ 677 (732)
+.+++..++-.. ..|..|.|+..|++|+.-+ |..|+.|++..-.. .+..+.+. .....-.+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998887655 6899999999999999877 99999999874211 11111111 12344678999999999
Q ss_pred EEEEEcCC-eEEEEECCCCeEE-EEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 678 LLVIGCYE-TLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 678 L~sgs~dg-~I~IwDl~t~~~~-~~~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++++... .+|||....|.++ .+.+.+ .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 98887544 8999999999988 444555 567889999999888887 778999993
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.6e-23 Score=196.79 Aligned_cols=290 Identities=18% Similarity=0.275 Sum_probs=226.9
Q ss_pred cccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 004737 396 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 475 (732)
Q Consensus 396 ~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~ 475 (732)
.+.+-..+.+.|+...+++....++-.+.+-.. +..+..+....+.-+.|.+.|+|.+|+|+|.+||+|+.|++|+
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 334444566777777766665444443332211 1122223334456678999999999999999999999999999
Q ss_pred EEEcC--CCeE---EEEeccCCCceEEEEEcCC----CCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEE-Ec
Q 004737 476 LWCTE--SFTV---KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FH 544 (732)
Q Consensus 476 VWd~~--t~~~---~~~l~~h~~~V~~l~fspd----g~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~-fs 544 (732)
+.-.. +... ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|...+. .+..+.+|++.|.++- |+
T Consensus 115 ~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghilalyswn 193 (350)
T KOG0641|consen 115 VLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHILALYSWN 193 (350)
T ss_pred EEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEEEEEEec
Confidence 97543 3222 2345669999999999653 45677664 36677777877766 5889999999998874 44
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004737 545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 616 (732)
Q Consensus 545 pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~ 616 (732)
..++++|+.|.+|++||++-..++.++... ..|..+++.|.|+.++++-.|....+||++.++.+..+.
T Consensus 194 ---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ 270 (350)
T KOG0641|consen 194 ---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH 270 (350)
T ss_pred ---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence 578999999999999999999998877521 348899999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 617 ~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
.|...|.|+.|+|...|+++|+ |..|++-|+...-. .-.+.....|...+..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999 99999999875321 23455566788999999999999889999999999999764
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=3e-22 Score=211.42 Aligned_cols=280 Identities=14% Similarity=0.124 Sum_probs=208.8
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp 502 (732)
..|..+++|+..++.. +..+..|.. +.+++|+|+++++ ++++.++.|++||..+++....+..+.. +..++|+|
T Consensus 8 ~~d~~v~~~d~~t~~~---~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 82 (300)
T TIGR03866 8 EKDNTISVIDTATLEV---TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHP 82 (300)
T ss_pred cCCCEEEEEECCCCce---EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECC
Confidence 3456788888877653 444555544 7789999999976 5667889999999999988877765544 57889999
Q ss_pred CCCeEEEE-eCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737 503 SLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 581 (732)
Q Consensus 503 dg~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~ 581 (732)
+++.++++ +.|+.|++||+.+.. .+..+. +...+.+++|+|++..++++...+..+.+||.++++....+.....+.
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 99977655 568999999998754 344444 234578899999986665444333467888999888776665556678
Q ss_pred EEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCC-----C--CEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC
Q 004737 582 QMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 651 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~-----~--~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~ 651 (732)
.+.|++++.++++++ .++.|++||+++++.+..+..+. . ....++|+|++++++++. ++.|.+||+.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~- 239 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY- 239 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 899999999887665 58999999999988776654221 1 235688999999865543 678999999876
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCeeEEEEeC
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAAST 714 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~~h~~~V~sla~sp 714 (732)
+.+..+. +...+.+++|+|++.+|+++. .++.|.+||+.+++.+.........+.++++|
T Consensus 240 --~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 --EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred --cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 3333332 345788999999999998874 58899999999999874334556678888865
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-23 Score=206.64 Aligned_cols=233 Identities=19% Similarity=0.293 Sum_probs=210.8
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
.+.+|..+++.|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+. ..+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence 357899999999999999999999999999999988776 588999999999999999885 455599999999999999
Q ss_pred CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737 567 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 634 (732)
Q Consensus 567 t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~-------t~~~i~~l~~h~~~V~sla~spdg~~L 634 (732)
+|+++..++....|..+.|+++++.++++..+ +.|.+||++ ..++...+..+...++.+-|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999999999999999999999988887763 579999998 456678888889999999999999999
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEe
Q 004737 635 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 713 (732)
Q Consensus 635 asgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~s 713 (732)
++|. ||.|.+||++++. +.+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999874 556666778889999999999999999999999999999999999877888999999999
Q ss_pred CCCCEEEEEE
Q 004737 714 TVNGMVASAS 723 (732)
Q Consensus 714 pdg~~LaSgs 723 (732)
|....++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777765
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=221.44 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=236.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~ 525 (732)
..+.|+|+.|+|...+|++|+.|++++||-++. ...+..+.--..+|.+.+|.|+|. .+++++.....++||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 346799999999999999999999999998763 445666666678999999999999 89999999999999998866
Q ss_pred ce-eEEeecCC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 526 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 526 ~~-~~~l~~h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
.. +....++. ..+....+++++. +|+..+..|.|.+....+++.+..++.++.+..++|+.++..|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22233333 3567788899975 666888899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe-CCeEEEEECCCC---CCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 604 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~---~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
||++...++.++....+ .-+++|.++++.||++|+ .|.|.|||..+. ..++++..+......|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999988874222 336788889999999999 789999997653 3356777777778899999999999988
Q ss_pred EEEEcC--CeEEEEECCCCeEE-EEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 679 LVIGCY--ETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 679 ~sgs~d--g~I~IwDl~t~~~~-~~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.++.. ..+++..+.+.... .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 888764 48999998887776 222 3345799999999999999999999999995
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.7e-24 Score=227.04 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=234.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
-.|..-|.++.+|...++++||+. |.|+|||+..- ..+..+. .....|.++.+.|||+.|++|++-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 368888999999999999999985 89999999743 2233332 24567999999999999999999999999999
Q ss_pred CCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC
Q 004737 522 ENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 522 ~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
......++ .+....-.+.+++.+||. .+.++|..||.|.|||+.+...++.|.. ..++.|+.++++|..|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 98765443 233333457889999996 5555777799999999999999999985 46799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
+|+.||+++++.+.... ....|.++..+|.+.+|++|- ++.+.|...... ..+.+.-|+..|.++.|.+.|+++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence 99999999987665543 467899999999999999999 778888887654 334556688999999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 679 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
++.+.|+.+..|.+.-|..+.-......|.++.++.|++||+||+.|....||
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999999988888666778899999999999999999999877776
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.2e-23 Score=207.31 Aligned_cols=277 Identities=18% Similarity=0.255 Sum_probs=213.7
Q ss_pred cccccCCCcccEEEEecCCCCcccccCCcccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEec
Q 004737 368 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 447 (732)
Q Consensus 368 ~l~~~~s~~~s~l~~s~~~~~~~~~~~~~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~ 447 (732)
.+...+.++++.+.|++- .+.++..+ ++|..+|+|++.....+.. +...
T Consensus 21 ev~~pP~DsIS~l~FSP~--------------~~~~~~A~----------------SWD~tVR~wevq~~g~~~~-ka~~ 69 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQ--------------ADNLLAAG----------------SWDGTVRIWEVQNSGQLVP-KAQQ 69 (347)
T ss_pred ecCCCcccchheeEeccc--------------cCceEEec----------------ccCCceEEEEEecCCcccc-hhhh
Confidence 444455567788888861 22344444 4567778888877422222 5677
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC--eEEEEeCCCeEEEEecCCCC
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~s~~ 525 (732)
.|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||.|++|+.||.+...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 899999999999999999999999999999999984 456668999999999988655 89999999999999999765
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEe--ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK--CQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
++.++. -.+.|++++.- ..+++.+..+..|.+|+++++.... .+. ..-.+.|+++..+...++.|+.+|.+.
T Consensus 149 -pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 -PVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -eeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 344443 34678888765 4567777779999999997654332 222 224488999999888889999999999
Q ss_pred EEECCCC--eEEEEEcCCCC---------CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737 603 ILDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 603 IwDl~t~--~~i~~l~~h~~---------~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~ 670 (732)
|..+..+ +.-..|+.|.. .|++|+|+|....|++++ ||++.+||-... ..+++...+..+|+++.
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeE
Confidence 9988876 44455666652 578899999877777766 999999998766 66777788999999999
Q ss_pred EeCCCCEEEEEEcC
Q 004737 671 FHPTFPSLLVIGCY 684 (732)
Q Consensus 671 fspdg~~L~sgs~d 684 (732)
|+.+|.+++.+...
T Consensus 301 fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 301 FNRNGSIFAYALGY 314 (347)
T ss_pred ecCCCCEEEEEeec
Confidence 99999988876543
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.6e-24 Score=207.46 Aligned_cols=248 Identities=21% Similarity=0.296 Sum_probs=203.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEEe
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 520 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWD 520 (732)
-..|.+.|..+...--|+.|||++.|++|+||.++.. +.+.++.+|.++|+.++|.. -|.+||++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4579999999999889999999999999999998753 57789999999999999965 699999999999999999
Q ss_pred cCCCCce-eEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC-e-ee-e-EEeccCCeeEEEEeCC---C--
Q 004737 521 TENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG-S-CA-G-VFKCQSGATQMRFQPR---L-- 589 (732)
Q Consensus 521 l~s~~~~-~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~-~-~i-~-~~~~~~~i~~v~~sp~---g-- 589 (732)
-+++... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+.+.. . .. + ..-+.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9887542 33567899999999999975 356778889999999998764 1 11 1 1224567999999986 4
Q ss_pred ---------CEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCC----CEEEEEe-CCeEEEEECCCCCCc
Q 004737 590 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 590 ---------~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg----~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
++|++++.|+.|+||+...+ +...++.+|.+.|+.++|.|.- .+|++|+ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 56999999999999999875 3345588999999999999963 5899999 999999998743222
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
-....+......++.+.||..|..|++++.|+.|.+|.-.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2333344456789999999999999999999999999643
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=3.5e-23 Score=226.68 Aligned_cols=256 Identities=17% Similarity=0.292 Sum_probs=222.0
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 499 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~-lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~ 499 (732)
+.++|++.++|+-.. ..+.+...+.+|.+-|.+ ++|-+ |+-.|++|+.|++|.+|......+..++.+|...|+|+.
T Consensus 30 s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 567788899998633 344566778899999988 88875 555799999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-C
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 578 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~ 578 (732)
...++. +++||.|.+++||.... ....+.+|...|+++.+.|++ .+++|+.|.+|++|.- ++++++|..| .
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 888877 99999999999998875 345689999999999999985 5669999999999986 7788888755 4
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
.|..+++-++ ..|++++.||.|++|++ +++++.++.+|...|+++....++..|++++ |++++||+.. .|..
T Consensus 181 ~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q 253 (745)
T KOG0301|consen 181 CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQ 253 (745)
T ss_pred heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEE
Confidence 5888998887 67889999999999999 7899999999999999999888888888888 9999999976 6777
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
.+......|+++.+-++|. |++|++||.||||....
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 7777778999999999988 99999999999998764
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-22 Score=202.24 Aligned_cols=247 Identities=19% Similarity=0.276 Sum_probs=203.7
Q ss_pred CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-CCCcE
Q 004737 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 560 (732)
Q Consensus 482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg~I 560 (732)
.+..+.+......|+++.|+++|.++++++.|.+++|||..+++. ++++..+.-.|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556666788999999999999999999999999999998874 7777777778888999776556664433 47899
Q ss_pred EEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737 561 RYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs- 638 (732)
++.++.+.+.++.|.+|. .|..++.+|-+..+++++.|++|++||++..++...+..... ..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence 999999999999998654 599999999999999999999999999998887776654333 4578999999999999
Q ss_pred CCeEEEEECCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCC---eeEEE
Q 004737 639 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA 711 (732)
Q Consensus 639 Dg~I~IWDl~t~~~~~~i~~~~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~---V~sla 711 (732)
.+.|++||++.-.+ .+..++. ......+.+.|+|+|++++.++..+.+++.|.-+|..+ .+..+... -...+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 44999999998644 2222322 34677899999999999999999999999999999877 44444332 25778
Q ss_pred EeCCCCEEEEEECCCeEEEeC
Q 004737 712 ASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 712 ~spdg~~LaSgs~DG~I~IWD 732 (732)
|+||+++|++|+.||+|.||+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=3.2e-21 Score=204.54 Aligned_cols=258 Identities=17% Similarity=0.264 Sum_probs=212.8
Q ss_pred CceeeeeecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg 504 (732)
...+-+|+...+..++....++.+. ..|.|++|.++| -+++|..+|.|.||+..+.+..+....|.+.|.+++...+|
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G 299 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG 299 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc
Confidence 3456789999988888888888765 569999999998 57899999999999999888887777999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCC------------------------------ce---------eEEeecCCcceEEEEEcC
Q 004737 505 SRLATSSADRTVRVWDTENPD------------------------------YS---------LRTFTGHSTTVMSLDFHP 545 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~------------------------------~~---------~~~l~~h~~~V~sl~fsp 545 (732)
.+|- |+.|..|..||-.-.+ .. .....+|.+..+.++.+|
T Consensus 300 tllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 300 TLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred cEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence 7554 9999999999832100 00 012346888999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004737 546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 625 (732)
Q Consensus 546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sl 625 (732)
+. ..+++|+.|+.+++|+ ..+.+.......++.++.|+|.+ .+++|+..|...+.|.++...+.... ...+++++
T Consensus 379 s~-~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v 453 (626)
T KOG2106|consen 379 SK-NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVV 453 (626)
T ss_pred Ch-hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEE
Confidence 95 5556999999999999 56777777777999999999998 99999999999999999965555444 48899999
Q ss_pred EEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 626 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 626 a~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+|+|+|.+|+.++ |+.|+||.+..... .....-.++..+|+.+.|++|+.++.+-+.|-.|..|.
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999999 99999999987543 33334445668999999999999998888888888884
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=232.79 Aligned_cols=275 Identities=19% Similarity=0.362 Sum_probs=217.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEecc---CCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCC
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s 523 (732)
.+.+|...++-..|+.++. ..++||.+... ++...+.. ....+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3566777788888888875 46777766532 22222211 123466788875 577999999999999999986
Q ss_pred --CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCC-CCEEEEEEcCC
Q 004737 524 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIEN 599 (732)
Q Consensus 524 --~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~-g~~ll~~s~dg 599 (732)
....+..|..|...|.+++|++...++|++|+.||.|++||++..+...++... ..|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 233456788999999999999999999999999999999999988887777654 45899999996 45677777789
Q ss_pred eEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 600 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 600 ~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
.+.+||++.. ++...+..|.++|.|+.|+|++.+|++|+ |+.|+|||..+... ..++++. ...++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999975 67788889999999999999999999999 99999999987543 3333333 3678999999999876
Q ss_pred EEEEE---cCCeEEEEECCCCeEE--EEccCCCCeeEEEEeC-CCCEEEEEECCCeEE
Q 004737 678 LLVIG---CYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 729 (732)
Q Consensus 678 L~sgs---~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~sp-dg~~LaSgs~DG~I~ 729 (732)
.++.+ .|-.|+|||++..-+- ++..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55443 3558999999877654 7789999999999964 456899999999763
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=211.47 Aligned_cols=249 Identities=17% Similarity=0.202 Sum_probs=213.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
.+.+++||...|+.+.|+++...+++++.|..|+||.............|..+|+.+..+|.|.||++++.|++..+.|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 46779999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred CCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC
Q 004737 522 ENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 522 ~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
+++........ ...-.+++.+||||| .+|.+|..|+.|+|||+.....+..|.. .++|..+.|+.+|.++++++.|+
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 98775333222 233458999999996 7888999999999999999888877774 46699999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 600 YISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
.|++||++..+...++.- ....|.+++|+..|.||+.++ |=.|++++-.+ +...++..+..|.+..+++.|.....+
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccceE
Confidence 999999999877666653 234799999999999999986 44666666444 234677788888889999999999999
Q ss_pred EEEEEcCCeEEEEEC
Q 004737 678 LLVIGCYETLELWNM 692 (732)
Q Consensus 678 L~sgs~dg~I~IwDl 692 (732)
+++++.|..++++.+
T Consensus 491 l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 491 LASTSMDAILRLYAL 505 (506)
T ss_pred EeeccchhheEEeec
Confidence 999999999888864
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.5e-22 Score=200.74 Aligned_cols=283 Identities=20% Similarity=0.335 Sum_probs=221.0
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCe----------EEEE-----eccCCCceEEEEEcC-CCCeE
Q 004737 445 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 507 (732)
Q Consensus 445 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~----------~~~~-----l~~h~~~V~~l~fsp-dg~~L 507 (732)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... .+.. -.+|...|..+.|.| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457889999999988 78999999999999999987532 1111 136888999999999 67789
Q ss_pred EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEE
Q 004737 508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 584 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~ 584 (732)
.+++.|.+++|||..+-+. ...|. ..+.|++-+|+|- ...++++|..|-.|++.|+..|.+.+.+..+ .+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998653 33343 5567888888874 3578889999999999999999999999854 5699999
Q ss_pred EeCCCCEE-EEEEcCCeEEEEECCCC-eEEEEEc--------------CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737 585 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKLQ--------------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 585 ~sp~g~~l-l~~s~dg~I~IwDl~t~-~~i~~l~--------------~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl 647 (732)
|+|...++ ++++.||.|++||++.. .|...+. .|.+.|..+||..++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99998875 56788999999999865 3443332 4667899999999999999998 999999999
Q ss_pred CCCCCceeEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737 648 GSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~~~----~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg 722 (732)
.++.....-..-..+.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88754221111111111 111 22 334444555556689999999999888 677898899999999999999999
Q ss_pred ECCCeEEEe
Q 004737 723 SHDKCVKIW 731 (732)
Q Consensus 723 s~DG~I~IW 731 (732)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.1e-23 Score=215.66 Aligned_cols=263 Identities=14% Similarity=0.220 Sum_probs=222.7
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
.++.|..+++|+..... +..++.+|.+.|..|++.. ..+++++.|++|+.|.++. ...+++.+ ...+..|.-+
T Consensus 84 SGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhhh---hhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence 56778889999987764 5677999999999999986 6889999999999999876 45666643 3457777777
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 581 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~ 581 (732)
..+..++||+.+ |.|||..... ++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+.++..+.......
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 778889998764 9999998644 6777777778899999999999999999999999999999999999888888899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737 582 QMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
.++|+|..-.|+++..|..++.||++.. .++....+|.+.|.++.|+|.|.-|++|+ |.+|+||..+.+......++-
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999998777888999999999999975 67778889999999999999999999999 999999999887443333221
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
.-..|.++.|+.|.+++++|+.|+.|++|...-.+
T Consensus 314 --RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 --RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred --hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 13468999999999999999999999999875433
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1e-22 Score=219.42 Aligned_cols=289 Identities=17% Similarity=0.240 Sum_probs=230.4
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC--eEEEEeCCCe
Q 004737 438 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT 515 (732)
Q Consensus 438 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~ 515 (732)
++..+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++.++. ..+.|.||+|+|.+. .||++-.+ .
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~ 465 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-C 465 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-c
Confidence 4445566789999999999999999999999999999999999999999886 445899999999755 34444332 3
Q ss_pred EEEEecCCC------------------------------------CceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--
Q 004737 516 VRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-- 557 (732)
Q Consensus 516 I~IWDl~s~------------------------------------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-- 557 (732)
+.|.+..-+ ..-++....|...|..+.|+..|.++..++..+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 444332211 111234455888999999999987776555433
Q ss_pred CcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737 558 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 636 (732)
Q Consensus 558 g~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las 636 (732)
..|.|.++........|. ..+.+.++.|+|...++++++ -..|+|||+.....+..+.....+|..++.+|.|..|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 468899998777666663 456799999999977776665 478999999988777777777889999999999999999
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE------CCCC-eEE---EEccCCC
Q 004737 637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN------MTEN-KTL---TLSAHDK 705 (732)
Q Consensus 637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD------l~t~-~~~---~~~~h~~ 705 (732)
++ |+.+..||+.-.. +....+..|...+++++|++....+++++.|+++.||. +-.+ .++ .+.+|..
T Consensus 625 gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 98 9999999998654 56778888999999999999999999999999988874 2222 222 5667866
Q ss_pred C----eeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 706 L----VSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 706 ~----V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
. |..+.|+|.-.+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 9999999999999999999999999
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=5.4e-23 Score=206.59 Aligned_cols=288 Identities=13% Similarity=0.218 Sum_probs=224.9
Q ss_pred CCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 004737 401 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 480 (732)
Q Consensus 401 ~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~ 480 (732)
..++++|+.|..++.+....- ..+.....+..-++......++++-.|.+.|+++.|+|....|++|+.|++|++||..
T Consensus 124 G~lvATGsaD~SIKildverm-laks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 124 GSLVATGSADASIKILDVERM-LAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CcEEEccCCcceEEEeehhhh-hhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 368899999998888732210 0000111111111222224578899999999999999999999999999999999987
Q ss_pred CCeEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE--eecCCcceEEEEEcCCCCcEEEEEeC
Q 004737 481 SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHPSKEDLLCSCDN 556 (732)
Q Consensus 481 t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~--l~~h~~~V~sl~fspdg~~llaSgs~ 556 (732)
.-...+.++ ....+|.++.|+|.|.+|+.|..--++++||+.+-++-+.. -..|++.|+++.+++.+ .+.++++.
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSk 281 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASK 281 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEecc
Confidence 643333222 34568999999999999999999999999999986643322 24689999999999997 56669999
Q ss_pred CCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEe
Q 004737 557 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWN 628 (732)
Q Consensus 557 Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~s 628 (732)
||.|++||--.++|+.++.. ...|.+..|..+++++++.+.|..+++|++.+++++..+.+-. ..-+...|+
T Consensus 282 DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN 361 (430)
T ss_pred CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc
Confidence 99999999999999988862 3458999999999999999999999999999999998887531 122445688
Q ss_pred CCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 629 TSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 629 pdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
....|++.-. .+.+.-||.++.... -..-.+|.+.+..+.-+|.+.-+++++.|-.+++|--
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~--~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRV--ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CccceEEccccccCceeeccccchhhh--hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 8888888877 668999999987532 2223468999999999999999999999999999954
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6e-23 Score=216.52 Aligned_cols=247 Identities=22% Similarity=0.263 Sum_probs=212.4
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 507 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L 507 (732)
.+.+|.+.+...+.... --.++|.|++-+|+|.||+.|+..+.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhhhhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 67788887765444222 235679999999999999999899999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEecCC--------CCceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737 508 ATSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s--------~~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~ 578 (732)
+||+.||.|.+|.+.. ...++..+..|+-+|+++...+.+ +..+++++.|.++++||+..+..+..+..+.
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998642 224577899999999999988763 4577799999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------------eEEEEEcCCCC--CEEEEEEeCCCCEEEEEe-C
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-D 639 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----------------~~i~~l~~h~~--~V~sla~spdg~~Lasgs-D 639 (732)
.+.+++++|.+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ |
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 9999999999999999999999999887532 23556778888 999999999999999999 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
|.|+|||+.+. .+++++....++|+.+.+.|-.+..+.
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceec
Confidence 99999999887 777777767888999998766544443
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.7e-23 Score=200.95 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=199.9
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC--ceeEEeecCCcceEEEEEc-CCCCcEEEEEeCCCcEEEEEC
Q 004737 489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 565 (732)
Q Consensus 489 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fs-pdg~~llaSgs~Dg~I~iWDl 565 (732)
..|.+.|.++...--|+.||||+.|++|+|+.+++.. ..+..+.+|.++|+.++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688999998888889999999999999999998765 5677999999999999995 555689999999999999999
Q ss_pred CCCeeeeEEe---ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEeCC---C---
Q 004737 566 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 631 (732)
Q Consensus 566 ~t~~~i~~~~---~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~spd---g--- 631 (732)
.++.-.+... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8885443333 4567999999986 446889999999999988764 233345579999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 004737 632 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 695 (732)
Q Consensus 632 --------~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~t~--- 695 (732)
+.|++++ |..|+||++.+. ....-..+..|...|..++|.|.- .+|++++.|++|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4578877 999999999886 324445588999999999999975 56999999999999976522
Q ss_pred -eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 696 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 696 -~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+...+......++.+.||..|++|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1123445677899999999999999999999999995
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.1e-22 Score=212.25 Aligned_cols=252 Identities=19% Similarity=0.334 Sum_probs=204.5
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCe----------EEEEeccCCCceEEEEEcCC-CCeEEEE
Q 004737 443 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPS-LSRLATS 510 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~----------~~~~l~~h~~~V~~l~fspd-g~~Lasg 510 (732)
+...--|.+.|+.+.+-|.. ..+|+.+..+.|.|||..+.. .-.++.+|...-+.++|++. .-+|+++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 34445699999999999954 567788889999999986432 22377899998899999984 4579999
Q ss_pred eCCCeEEEEecCCCCc------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC--CeeeeEEe-ccCCee
Q 004737 511 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGAT 581 (732)
Q Consensus 511 s~Dg~I~IWDl~s~~~------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t--~~~i~~~~-~~~~i~ 581 (732)
+.|++|++||+..... +...+.+|...|..++|++....+|+++++|+.+.|||+++ .++..... +...+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 9999999999975433 34578999999999999999999999999999999999994 44444444 457799
Q ss_pred EEEEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCC-----
Q 004737 582 QMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 652 (732)
Q Consensus 582 ~v~~sp~g~~-ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~----- 652 (732)
|++|+|.+.+ |++++.|++|.+||+++. .++..+.+|...|.+|.|+|+.. +|++++ |+.+.|||+..-..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999997665 556777999999999985 67889999999999999999865 555555 99999999975322
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 004737 653 ------GECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 694 (732)
Q Consensus 653 ------~~~i~~~~~~~~~I~sl~fspdg~~L-~sgs~dg~I~IwDl~t 694 (732)
.+.+....+|...|..+.|+|...++ ++++.|+.+.||.+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 34566777899999999999999775 5567778999999864
No 120
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.9e-22 Score=212.86 Aligned_cols=240 Identities=15% Similarity=0.231 Sum_probs=192.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe------------ccCCCceEEEEEcCCC-CeEEEEeCCC
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPSL-SRLATSSADR 514 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l------------~~h~~~V~~l~fspdg-~~Lasgs~Dg 514 (732)
.....|.++.|++.|..|++.+....++|+|-...+..... ++|...++|.+|+|+. ..|+|++.||
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 44557999999999999998888899999997765554433 4799999999999964 5799999999
Q ss_pred eEEEEecCCCCceeEEee-----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEe--cc--CCeeEE
Q 004737 515 TVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--CQ--SGATQM 583 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~-----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i--~~~~--~~--~~i~~v 583 (732)
+++|||+.+.+.....++ +..-+++.++|+++++. ||+|..||.|.+|+......- ..++ |. ..|+++
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI 370 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence 999999997665444433 23457899999999865 778888999999998543322 1111 22 369999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-------CCeEEEEECCCCCCc
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQ-VCRLKLQG--HKNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKG 653 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~--h~~~V~sla~spdg~~Lasgs-------Dg~I~IWDl~t~~~~ 653 (732)
.|+++|++|++-+.|+.+++||++.. +++....+ ...+-+.++|+|+.++|++|. .|++.+||..+.
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~--- 447 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL--- 447 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---
Confidence 99999999999999999999999975 55555444 234567899999999999986 247999998877
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
..+..+......|..|.|+|.-+.|++++.||.++||=
T Consensus 448 d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 448 DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 66777777788999999999999999999999999873
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.7e-22 Score=211.39 Aligned_cols=242 Identities=20% Similarity=0.317 Sum_probs=198.0
Q ss_pred ccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCc---------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737 489 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 558 (732)
Q Consensus 489 ~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~---------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg 558 (732)
..|.+.|+.+++.|. ..++|+.+..+.|.|||..+..- +-..+.+|...-+.++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 359999999999995 55777888899999999875321 12278899998899999999888899999999
Q ss_pred cEEEEECCCCee-------eeEEe-ccCCeeEEEEeCCCC-EEEEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEE
Q 004737 559 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 627 (732)
Q Consensus 559 ~I~iWDl~t~~~-------i~~~~-~~~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~--t~~~i~~l~~h~~~V~sla~ 627 (732)
.|++||+..... ...+. +...|..++|++... .|.+++.|+.+.|||++ +.++.....+|...|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975332 22333 345588899998654 46677888999999999 56677778889999999999
Q ss_pred eCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCe--------
Q 004737 628 NTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK-------- 696 (732)
Q Consensus 628 spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~-------- 696 (732)
+|.+ .+||+|+ |++|++||+++.. .+++.+..|...|..+.|+|.. ..|++++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9965 5667777 9999999999875 5899999999999999999976 567788889999999985311
Q ss_pred -------EEEEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEeC
Q 004737 697 -------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 732 (732)
Q Consensus 697 -------~~~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWD 732 (732)
++.-.+|...|..+.|+|... .|+++++|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 124558999999999999886 677889999999996
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2.4e-20 Score=197.97 Aligned_cols=295 Identities=15% Similarity=0.186 Sum_probs=229.4
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEE---eccC-CCceE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKST---LEEH-TQWIT 496 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~---l~~h-~~~V~ 496 (732)
.++.+....+|+|.++....++.+ ....|..+.|.|.+. ++++++ .+.+.+|+.+.+...++ ++.+ ...|.
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl 250 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVL 250 (626)
T ss_pred cCCCccccchhhchhhhccCccee---ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEE
Confidence 567788899999999987766554 456799999999555 555554 68999999998766544 3333 36799
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------
Q 004737 497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------- 569 (732)
Q Consensus 497 ~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~------- 569 (732)
|++|.++|. ++||..+|.|.||+..+........ .|.+.|.+++...+| .++ +|+.|..|..||-.-.+
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc-cEe-ecCccceEEeccccccccccccCc
Confidence 999999886 7899999999999998766544444 999999999999886 455 69999999999832110
Q ss_pred ----eee------------------------------EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737 570 ----CAG------------------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 615 (732)
Q Consensus 570 ----~i~------------------------------~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l 615 (732)
.++ .+.+......++..|+...+++++.|+.+++|+ ..+++.+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~ 404 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK 404 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE
Confidence 000 111223355678888889999999999999999 44444443
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 616 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 616 ~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
. -..++.|+.|+|.| .++.|. .|...+.|.++. ..+..... ..+++++.|+|+|.+|++++.|+.|+||-+..
T Consensus 405 ~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 405 I-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred E-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 3 45788999999999 888888 999999999884 34443333 88999999999999999999999999999865
Q ss_pred CeE-E-EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 695 NKT-L-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 695 ~~~-~-~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.. . ... .|..+|+.+.|++|+++|.+-+-|-.|..|+
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 443 3 222 3448999999999999999999999999994
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-21 Score=219.40 Aligned_cols=276 Identities=15% Similarity=0.232 Sum_probs=218.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
-+|+..-+.|+|.|+|++|++++.||.|++|+...- +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378888999999999999999999999999987765 4445555577888888774 4599999999999999999876
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 604 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw 604 (732)
. -..+...+-++.+++|+-+| .+++.|++|-.|++.+.........++ +..+|.++.|+|.+.+|++.+.||.|+||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 3 34556667899999999886 456688889999999998887777776 45679999999999999999999999999
Q ss_pred ECCCCeEEEEEcCC--------CCCEEEEEEeCCCCEEEE-EeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 605 DVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 605 Dl~t~~~i~~l~~h--------~~~V~sla~spdg~~Las-gsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
|+.++.+...+.+- ...+..++|+|++..|+. +.|+.|++|+..+......+. .+.+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998777665531 335677899999555555 559999999998874322222 22334459999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 676 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
.||++++.+|.|.|||+++-.. ......|.+++|.|+.+.|-....-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998221 233467999999999876655555554443
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=4.9e-22 Score=210.12 Aligned_cols=263 Identities=17% Similarity=0.300 Sum_probs=221.0
Q ss_pred CCCCceeeeeecCCCceeEEEEEecC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEE
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDV 498 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~--H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l 498 (732)
.+..+.+++|++.....-.++..+.. ..+.|.+|.+.|||+.|++|++-.+|.|||+..-.. ...+....-.++++
T Consensus 436 TgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL 515 (705)
T KOG0639|consen 436 TGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 515 (705)
T ss_pred ecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence 34567789999877544445555543 456799999999999999999999999999975433 33444444567889
Q ss_pred EEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737 499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~ 578 (732)
+.+||.+..++++.||.|.|||+.+.. .++.|.+|.+.+.||+++++|..+ .+|+-|.+||.||++++..+.......
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcWDlregrqlqqhdF~S 593 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCWDLREGRQLQQHDFSS 593 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCcee-ecCCCccceeehhhhhhhhhhhhhhhh
Confidence 999999999999999999999999754 689999999999999999998555 599999999999999999888888888
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
.|.++.++|.+.++++|-.++.+.|....... ...+.-|+.-|.++.|.+.|+++++.+ |+.+..|....+ ..+.
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiF 669 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIF 669 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---ccee
Confidence 99999999999999999999999998876543 445566999999999999999999988 999999998877 4444
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
..+ ....|.+|.++.+.++|++|+.|+...||.+
T Consensus 670 qsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 670 QSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 433 4678999999999999999999998888865
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.6e-22 Score=217.95 Aligned_cols=277 Identities=23% Similarity=0.323 Sum_probs=210.6
Q ss_pred EEEEcC---CCCEEEEEECCCcEEEEEcCCCeEE------EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737 455 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 455 ~lafSp---dg~~Lasgs~Dg~I~VWd~~t~~~~------~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
++.|++ ....||.+.+||.|.++|.+..... ..+..|...|.++.|.|....|++++.|.++++||+....
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 367766 3347999999999999998754333 4456799999999999977789999999999999999876
Q ss_pred ce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee--------------------eeEE-------e-c
Q 004737 526 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------------AGVF-------K-C 576 (732)
Q Consensus 526 ~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~--------------------i~~~-------~-~ 576 (732)
.. .+.+.+|...|.+++|.|.+..+||+|+.||.|.|||++.... .... + .
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 42 1348999999999999999999999999999999999864320 0000 0 1
Q ss_pred cCCeeE---EEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------cCC---CCCEEEEEEeCCCCEEEEEe-CC
Q 004737 577 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DE 640 (732)
Q Consensus 577 ~~~i~~---v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l--------~~h---~~~V~sla~spdg~~Lasgs-Dg 640 (732)
...+.. +.+..|...|++++. |+.|+|||+++....... ..| ...+.+++.+..|.+|++.+ |+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 112333 556667788888877 999999999986544322 122 23577788888888877766 99
Q ss_pred eEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCC
Q 004737 641 LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 716 (732)
Q Consensus 641 ~I~IWDl~t~~~~~~i~~~~~~~~--~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg 716 (732)
.|++|++..... ..+..+.++.. -...-..+|++.++++++.|...++|.+.+...- .+.+|.-.|++++|.|..
T Consensus 294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 999999987543 23333333221 2233467999999999999999999999876644 677999999999998854
Q ss_pred -CEEEEEECCCeEEEeC
Q 004737 717 -GMVASASHDKCVKIWK 732 (732)
Q Consensus 717 -~~LaSgs~DG~I~IWD 732 (732)
.-++||++|-.++||+
T Consensus 373 ~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWR 389 (720)
T ss_pred CCCceeeccCcceEEEe
Confidence 3578889999999996
No 126
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=3.4e-21 Score=211.07 Aligned_cols=284 Identities=21% Similarity=0.287 Sum_probs=224.1
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEE--EEe---ccCCCceEEEEEcCCCCeEEEEeCCCeEE
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVK--STL---EEHTQWITDVRFSPSLSRLATSSADRTVR 517 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~--~~l---~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 517 (732)
.+-||.+.|+++.|+|++..|++++.|+++.||..++. --+ ..+ .+.....+..-|+|+++.+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34599999999999999999999999999999976643 222 222 23345688999999999999999999999
Q ss_pred EEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----e-eEEeccCCeeEEEEeCCCC
Q 004737 518 VWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----A-GVFKCQSGATQMRFQPRLG 590 (732)
Q Consensus 518 IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~----i-~~~~~~~~i~~v~~sp~g~ 590 (732)
+|...+... ....+.||.+.|..++|+|.|+++| +.+.|-+-|+|-.-..+. + +.-.+....+|++|-+..-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 999433221 2345789999999999999987655 888899999987652111 1 1112334588899988656
Q ss_pred EEEEEEcCCeEEEEECCC-------------------------------------------CeE----------------
Q 004737 591 RILAAAIENYISILDVET-------------------------------------------QVC---------------- 611 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t-------------------------------------------~~~---------------- 611 (732)
.+++|..+..+++|+... +..
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 777888888889987420 000
Q ss_pred -----------------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCceEE
Q 004737 612 -----------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFHS 668 (732)
Q Consensus 612 -----------------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~~~~~I~s 668 (732)
+.++.+|...|++++.+|+++++++++ .. .|++|+..+. ..+..+..|.-.|+.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence 112237888999999999999999988 21 7999999877 556688899999999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEE-----EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 669 CVFHPTFPSLLVIGCYETLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 669 l~fspdg~~L~sgs~dg~I~IwDl~t~~~~-----~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++|+||+++|++++.|.++.+|...+.... ....|..-|+++.|+|++.+++|+|.|.+|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999998655443 3568999999999999999999999999999994
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2e-21 Score=195.61 Aligned_cols=258 Identities=19% Similarity=0.309 Sum_probs=198.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC----CCeEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEE
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 519 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~----t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IW 519 (732)
-.+|.+-|+|+.|.+.|+.+|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 34799999999999999999999999999999954 3456677889999999999965 48999999999999999
Q ss_pred ecCCCC--------ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCC
Q 004737 520 DTENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 590 (732)
Q Consensus 520 Dl~s~~--------~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~ 590 (732)
.-.... ....++......|+.+.|.|.. ...+++++.||+||||+.-..-.+........+..+.-
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~----- 163 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID----- 163 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-----
Confidence 753111 1234566677899999999963 35678899999999998754332222221111111100
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC---CCEEEEEeCC------eEEEEECCCCC-CceeEEEee
Q 004737 591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELS 660 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd---g~~LasgsDg------~I~IWDl~t~~-~~~~i~~~~ 660 (732)
....+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++.
T Consensus 164 -----------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 164 -----------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred -----------------------CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 11125566788888874 4688888865 89999987654 456677888
Q ss_pred cCCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCe--------------------EE-EEccCCCCeeEEEEeCC
Q 004737 661 CTGNKFHSCVFHPT----FPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTV 715 (732)
Q Consensus 661 ~~~~~I~sl~fspd----g~~L~sgs~dg~I~IwDl~t~~--------------------~~-~~~~h~~~V~sla~spd 715 (732)
.+..+|+.++|.|. ...|++++.|| |+||.++... .+ .+..|.+.|+.+.|+-.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 99999999999996 35688899999 9999987311 11 46689999999999999
Q ss_pred CCEEEEEECCCeEEEeC
Q 004737 716 NGMVASASHDKCVKIWK 732 (732)
Q Consensus 716 g~~LaSgs~DG~I~IWD 732 (732)
|.+|++.+.||.|++|+
T Consensus 300 GtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 300 GTILSSTGDDGCVRLWK 316 (361)
T ss_pred eeEEeecCCCceeeehh
Confidence 99999999999999996
No 128
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=4.2e-22 Score=217.56 Aligned_cols=243 Identities=21% Similarity=0.349 Sum_probs=211.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC---CCCeEEEEeCCCeEEEEecCCCCc
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDY 526 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~I~IWDl~s~~~ 526 (732)
...|.|++.+|+|++||+|..-|+++||++...+....++.|...|.|+.|+. ..++||+++.|..|+|||+...-.
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 44699999999999999999999999999999999999999999999999986 357899999999999999998777
Q ss_pred eeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe------ccCCeeEEEEeCCCCEEEEEEcCC
Q 004737 527 SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~------~~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
.+.++.+|...|+++.|.-.| +.-+++|+.|..|.+--.........+. .+..+..+++.|..+++++++.|.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 788999999999999998765 4456688889877654333211111111 234578899999999999999999
Q ss_pred eEEEEECCCCeEEEEEcC---CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 600 YISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~---h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
.|+|||+++++.++.|++ |++....+...|.|.||++.+ |.++.++|+.++ +|+....+|...|+.+.|.+|-
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecccc
Confidence 999999999999999986 667788899999999999987 999999999998 8999999999999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC
Q 004737 676 PSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~t~ 695 (732)
++|++++.||.|.||.+...
T Consensus 696 kHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhheeecCCceEEEEECchh
Confidence 99999999999999998653
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.5e-23 Score=230.27 Aligned_cols=254 Identities=21% Similarity=0.373 Sum_probs=224.0
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 541 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl 541 (732)
+.+++....+-.++|||... +..|...|.|+..-..++.+++|+.|..+.+|.+.... .+..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceee
Confidence 34555556666788888653 44688889999887788999999999999999998766 466799999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 620 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 620 (732)
.|++. +.+|++|+.+|+|++||++..+.++++.++ ..+..+.|+|-+.+++.++.|+.+.+||++...|...+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 578889999999999999999988887754 5688999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-
Q 004737 621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 698 (732)
Q Consensus 621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~- 698 (732)
.|.++.|+|+|++++.++ |..++|||...+ +.+.++..|...+..+.|+|..-.++.|+.|++|++||+++...+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 789999999888 788899999999999999999999999999999999999998888
Q ss_pred EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 699 TLSAHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 699 ~~~~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
........|.+.+|++++..+++|..+.
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchhh
Confidence 4455678899999999999988886543
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=210.63 Aligned_cols=305 Identities=17% Similarity=0.260 Sum_probs=234.2
Q ss_pred CCceeeeeecCCC-ce-eEEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 425 RDRVGRSAEVGKG-FT-FTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 425 ~d~~~r~wd~~~g-~~-~~~v~~l~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
.+..+.+|+...+ .+ ......++.-.+.|+++. +|.. +.++.|+.+|.+.||++++++.++++.++...|+++.=
T Consensus 132 ~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 132 ISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEecc
Confidence 3456677887764 22 122233333333477764 4432 45889999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccC
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQS 578 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~ 578 (732)
+|-=..+|.|..+|+|.|++++.++ .+..++-..+.|+.++|..||+.++++++..|.+.+||++..+.+.... +.+
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~dk-il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~ 289 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKFDK-ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG 289 (910)
T ss_pred CCcceEEEEeccCceEEEEEcccCc-EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC
Confidence 9988899999999999999999876 5777774459999999999999999999999999999999888776665 335
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECC--CC-----------------------------------------------
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVE--TQ----------------------------------------------- 609 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~--t~----------------------------------------------- 609 (732)
.+....|.+....+++++.|+.+++|=.+ .+
T Consensus 290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~ 369 (910)
T KOG1539|consen 290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ 369 (910)
T ss_pred CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence 56666666666666666666655444211 00
Q ss_pred ---------------------------------------------------------------eE-EEEEcCCC------
Q 004737 610 ---------------------------------------------------------------VC-RLKLQGHK------ 619 (732)
Q Consensus 610 ---------------------------------------------------------------~~-i~~l~~h~------ 619 (732)
.. ...+ .+.
T Consensus 370 ~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~ 448 (910)
T KOG1539|consen 370 SQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDD 448 (910)
T ss_pred hHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccC
Confidence 00 0000 111
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
..+++++.++.|++.+.|. .|.|.+|++.++-....+..-..|..+|+.++...-++.+++++.+|.+.+||..+..++
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 4578889999999998888 899999999988332222223578999999999999999999999999999998765410
Q ss_pred ------------------------------------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 699 ------------------------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 699 ------------------------------------------~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 2347999999999999999999999999999998
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-20 Score=205.03 Aligned_cols=280 Identities=17% Similarity=0.230 Sum_probs=228.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-eEEEEeccC-CCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
.++.+.--...|+|+||+.+.+.||.+-.||.|.||++... -....+.++ ...|..++|+ ++..|++.+.+|.|.-|
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 34455566788999999999999999999999999999864 333455555 4679999999 45678888899999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEE
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s 596 (732)
|+.+.+ ....+....+.|++++.+|.+ ..++.|++||.++++++..++...... ..+.+.++.|++++.+++.|+
T Consensus 96 Dl~~lk-~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 96 DLHTLK-QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ecccCc-eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999876 466777788999999999986 555577789999999998887765443 236799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEc-------C-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737 597 IENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 667 (732)
Q Consensus 597 ~dg~I~IwDl~t~~~i~~l~-------~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~ 667 (732)
.||.|++||+.++..+.... . ...-|+++.|-.++. |++|. .|+|.+||...+ ..+..+..|...|.
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl 249 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVL 249 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhccee
Confidence 99999999999987665211 1 233577888886664 55555 999999999888 77888889999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeE--E---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~--~---~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+++..+++.++++++.|+.|.-|...+++. + ....|...|.+++..++ .|++|+.|..+.|
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 999999999999999999998888877643 1 44578899999999866 8999999998865
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.4e-23 Score=228.55 Aligned_cols=237 Identities=26% Similarity=0.415 Sum_probs=214.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 34668999999999977889999999999999999988888888999999999999999999999999999999999998
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.+ .++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.++.+ ..+..+.|+|+|.+++.++.|..++
T Consensus 102 Ak-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 66 5889999999999999999974 5589999999999999998899988854 3478889999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737 603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg 681 (732)
|||+..++....|..|.+.|.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+..|.|++..+++|
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeecC
Confidence 999999999999999999999999999999999999 999999999876 6777777778899999999999977777
Q ss_pred EcCC
Q 004737 682 GCYE 685 (732)
Q Consensus 682 s~dg 685 (732)
....
T Consensus 257 ~q~s 260 (825)
T KOG0267|consen 257 EQIS 260 (825)
T ss_pred chhh
Confidence 6543
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=8.9e-21 Score=207.82 Aligned_cols=357 Identities=17% Similarity=0.237 Sum_probs=258.8
Q ss_pred ccccCCCcccEEEEecCCCCcccccCCcccccCCeeeccccCCce-eeccCCCC---CCCCCceeeeeecCCCceeEEEE
Q 004737 369 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNV-ESFLSPDD---ADPRDRVGRSAEVGKGFTFTEFQ 444 (732)
Q Consensus 369 l~~~~s~~~s~l~~s~~~~~~~~~~~~~l~~~~~~v~~gs~d~~v-~~~~s~~~---~~~~d~~~r~wd~~~g~~~~~v~ 444 (732)
...+++.++++|+|.++....+-+....+-.+. |+..+-. ..|..... ..++..-.++|.......+....
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-----g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-----GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccc-----ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 345677899999999987655444433332222 1110001 11211111 34455566888855555566677
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
.+.||.+.|++++|.|.|+||++.+.|-+-+||-.-. ...+.+-.-|...++|++|-+....|++|...+.+|+|+
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 8899999999999999999999999999999986441 123333456888899999998767889998899999997
Q ss_pred cCC-------------------------------------------CC--------------------------------
Q 004737 521 TEN-------------------------------------------PD-------------------------------- 525 (732)
Q Consensus 521 l~s-------------------------------------------~~-------------------------------- 525 (732)
... +.
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 640 00
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCC
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg 599 (732)
..+..+.||...|++++.+|++ ++++++... ..|++|+..+...+..+..+ -.|+.++|+|++++|++++.|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 0122356799999999999996 677777643 46999999988777766644 4699999999999999999999
Q ss_pred eEEEEECCCCe----EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE--EeecCCCceEEEEEe
Q 004737 600 YISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCTGNKFHSCVFH 672 (732)
Q Consensus 600 ~I~IwDl~t~~----~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~--~~~~~~~~I~sl~fs 672 (732)
++.+|...... .....+.|..-|.++.|+|++.++++++ |.+|+||....... .++. ....+...|+.++|.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEee
Confidence 99999875431 1233677999999999999999999999 99999999887621 2222 233467889999887
Q ss_pred CC-----CCEEEEEEcCCeEEEEECC------CCeEE-------EEccCCCCeeEEEEeCCC----------CEEEEEEC
Q 004737 673 PT-----FPSLLVIGCYETLELWNMT------ENKTL-------TLSAHDKLVSSLAASTVN----------GMVASASH 724 (732)
Q Consensus 673 pd-----g~~L~sgs~dg~I~IwDl~------t~~~~-------~~~~h~~~V~sla~spdg----------~~LaSgs~ 724 (732)
|- +..+++|-..|.|.+|... +.... ....|...|+.+.|.|.. ..|++|++
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 73 2357788889999999865 11111 234678889999999752 25799999
Q ss_pred CCeEEEeC
Q 004737 725 DKCVKIWK 732 (732)
Q Consensus 725 DG~I~IWD 732 (732)
|..++|++
T Consensus 754 D~~vri~n 761 (764)
T KOG1063|consen 754 DESVRIFN 761 (764)
T ss_pred cceeEEee
Confidence 99999985
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-20 Score=213.14 Aligned_cols=241 Identities=17% Similarity=0.264 Sum_probs=200.0
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737 489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 489 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~ 568 (732)
..|+...+.|+|.|+|++|++++.||.|++|+.......-.++..+...|.+++... ..|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence 468888999999999999999999999999998765322334444778888888763 36779999999999999887
Q ss_pred eeeeEE-eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Q 004737 569 SCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646 (732)
Q Consensus 569 ~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWD 646 (732)
+.-..+ +..-++.+++|+-+|.++++|+.|-.|++.++.+......+.+|.++|.+|.|+|.+++|++.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 654222 2347789999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE--ccCCCCeeEEEEeCCCCE
Q 004737 647 IGSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL--SAHDKLVSSLAASTVNGM 718 (732)
Q Consensus 647 l~t~~~~~~i~~~~----~~-~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~--~~h~~~V~sla~spdg~~ 718 (732)
+.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..++... .+ ..+...++++.|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 99873322221111 11 344677899999999999999999999999998776 33 345556999999999999
Q ss_pred EEEEECCCeEEEeC
Q 004737 719 VASASHDKCVKIWK 732 (732)
Q Consensus 719 LaSgs~DG~I~IWD 732 (732)
||+++.||.|.|||
T Consensus 247 iAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 247 IAASTLDGQILVWN 260 (933)
T ss_pred EeeeccCCcEEEEe
Confidence 99999999999997
No 135
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.6e-21 Score=193.04 Aligned_cols=245 Identities=20% Similarity=0.301 Sum_probs=208.2
Q ss_pred eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 562 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i 562 (732)
..++.+.+|.+.|+.++-.....++.+++.|.+.+||.++++. ++..|.||.+.|++|.|++.+ .++++++.|++..|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHI 216 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-ceeeecccccceeeEEecccc-ceEEEccCCcchHH
Confidence 4566788999999999998877899999999999999999987 588999999999999999985 67779999999999
Q ss_pred EEC------CC--------Ce--------------------------eeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 563 WSI------NN--------GS--------------------------CAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 563 WDl------~t--------~~--------------------------~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
|.. .. ++ ++..+.. ...+.+..|-..+..+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 961 11 00 1112222 2336677788889999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
.+||+++++.+..+.+|....+.++-+|..+++++.+ |.+.++||++.. ...+..+.+|...|+++.|..+.+ +++
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVS 373 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVS 373 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eee
Confidence 9999999999999999999999999999999999999 999999999843 367788999999999999999887 889
Q ss_pred EEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 681 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 681 gs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++.|.+|+|||+++.+.. .......+++.++.+..+.+|+.--+...|++||
T Consensus 374 gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999999886543 4556678899999998888888888888899987
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.9e-20 Score=189.12 Aligned_cols=234 Identities=18% Similarity=0.268 Sum_probs=190.2
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
..+.|..+.|+|.+..|+++++||++++||+.... ++....|..++.+++|.++ .-+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence 35789999999999999999999999999999763 4555568999999999975 4556899999999999999998
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737 571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t 649 (732)
...-.+..++.++.+.+..+.+++|+.|+.|++||.+.......+. ....|.++... +..|++|+ |..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 8888888999999999999999999999999999999866665555 34478887764 55666655 99999999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEccCCC---------CeeEEEEeCC
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDK---------LVSSLAASTV 715 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~-----~~~~~~~h~~---------~V~sla~spd 715 (732)
....... .-......+.++++-|.+.-+++++-||.|.+=.++.. +...+..|.. +|++|+|+|-
T Consensus 165 ~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 7543211 22234567899999998888999999997776544433 2335555642 6999999999
Q ss_pred CCEEEEEECCCeEEEeC
Q 004737 716 NGMVASASHDKCVKIWK 732 (732)
Q Consensus 716 g~~LaSgs~DG~I~IWD 732 (732)
.+.||||+.||.|.+||
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999997
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=197.98 Aligned_cols=258 Identities=13% Similarity=0.184 Sum_probs=203.5
Q ss_pred EECC-CcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeC-CCeEEEEecCCCCceeEEeecCCcceEEEEEc
Q 004737 468 GGHD-KKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 544 (732)
Q Consensus 468 gs~D-g~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs 544 (732)
++.| .++.+||+.+|....++++.. ..-..+..- .+.|++++.. ...|.+|.+....... .+.--.++|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3344 459999999999988887642 111112111 2356666654 4589999998654322 334456789999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 004737 545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 614 (732)
Q Consensus 545 pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~---------t~~~i~~ 614 (732)
|+|. +++.|+..|.|++|.+.+|..+..+.. -..|+|+.|+.|+.+|++++.||.|.+|++. +-+++..
T Consensus 91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9974 554666789999999999999988764 3569999999999999999999999999764 3467888
Q ss_pred EcCCCCCEEEEEEeCC--CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 615 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 615 l~~h~~~V~sla~spd--g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+..|.-+|+.+...+. ..+|++++ |.++++||+..+ ..+..+. ....+.+++.+|.++.+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 9999999999988765 35788888 999999999988 4554443 467899999999999999999999999987
Q ss_pred CCCCe-----------------EEEEccCCC--CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 692 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 692 l~t~~-----------------~~~~~~h~~--~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.... ...+.+|.+ .|+|++++-||..|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74332 115668888 999999999999999999999999997
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=9.2e-21 Score=200.40 Aligned_cols=282 Identities=18% Similarity=0.217 Sum_probs=211.8
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEcCCC
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~-Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fspdg 504 (732)
.+++||+..-....++-...... .|.+++|+....+ +++.+.|..|++|.-.. ++....-....+.-.|++.....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred ceEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 34666665544333332222222 3899999876632 33445788999996432 22222211122234555555556
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQ 582 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~ 582 (732)
.|+++|+..+.|+|||+.. +.+.+.+++|...|+++.++..+ .+|++++..|.|.|..+.++.....|.+..+ +.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 8999999999999999994 55788999999999999999774 6777999999999999999988888886633 568
Q ss_pred EEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737 583 MRFQPRLGRIL-AAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 583 v~~sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l-~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~ 658 (732)
+.|++..++++ +++.+|.|.+||+....++..+ +.|..+...|||+|... +|++.+ |.+|.+||++......++
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-- 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-- 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--
Confidence 99999877655 5677899999999988777654 45999999999999765 555666 999999999875333333
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCC
Q 004737 659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 716 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg 716 (732)
....+...++|.++|.+|++|...|.|+.||++..+.. .+.+|...|++++|-+.-
T Consensus 248 --~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 --TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 24678999999999999999999999999999876643 667999999999998764
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.7e-20 Score=189.00 Aligned_cols=285 Identities=19% Similarity=0.335 Sum_probs=219.2
Q ss_pred EEecCCCCCeEEEEEcC----C-CCEEEEEECCCcEEEEEcCCC---eEEEEe--ccCCCceEEEEEcCC----CCeEEE
Q 004737 444 QLIPASTSKVESCHFSP----D-GKLLATGGHDKKAVLWCTESF---TVKSTL--EEHTQWITDVRFSPS----LSRLAT 509 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSp----d-g~~Lasgs~Dg~I~VWd~~t~---~~~~~l--~~h~~~V~~l~fspd----g~~Las 509 (732)
+....|+.+|..++|.+ + -..+|+++. ..|.+|....- ..+..+ ..|......++|+-| ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999985 2 235666654 58888876532 223333 247778888999764 347899
Q ss_pred EeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEEEE
Q 004737 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRF 585 (732)
Q Consensus 510 gs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v~~ 585 (732)
++.-|.|+|.|+.++. ....+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..+. +...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999876 4788999999999999999999999999999999999999999999886 3456999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeE------E-------------------E---EEcCCCCCEEEEEEeCCCCEEEEE
Q 004737 586 QPRLGRILAAAIENYISILDVETQVC------R-------------------L---KLQGHKNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 586 sp~g~~ll~~s~dg~I~IwDl~t~~~------i-------------------~---~l~~h~~~V~sla~spdg~~Lasg 637 (732)
+.++.+|++++.|..|++|++...+. . . +-.-|...|-|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 99999999999999999999983211 1 0 111356666667664 5788887
Q ss_pred e-CCeEEEEECCC-C----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCeEE---EE
Q 004737 638 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 700 (732)
Q Consensus 638 s-Dg~I~IWDl~t-~----------~~~~~i~~~~~~~~~I~sl--~fspdg~~L~sgs~dg~I~IwDl~t~~~~---~~ 700 (732)
+ ++.|..|.... . .....+.++......|+-+ +|.+-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 99999998721 1 1112344444444455544 56677899999999999999999887763 22
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 701 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 701 ~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
. .....|...+|+.|+.+|+..++|+.|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 3356799999999999999999999999886
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.8e-20 Score=186.20 Aligned_cols=207 Identities=19% Similarity=0.326 Sum_probs=174.9
Q ss_pred cCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC------cee--------EEeecCCcceEEEEEcCCCCcEEEEE
Q 004737 490 EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSC 554 (732)
Q Consensus 490 ~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~------~~~--------~~l~~h~~~V~sl~fspdg~~llaSg 554 (732)
.|.+.|..+...+ .|+|+++|+.||.|.|||+++.. ... ....+|.-.|..+.|.|-+.-++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5889999999987 68999999999999999998543 001 12246888999999999888999999
Q ss_pred eCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC
Q 004737 555 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 631 (732)
Q Consensus 555 s~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg 631 (732)
+.|.+++|||.++-+....|+.++.|..-+++|-. -.+++|..+-.|++.|+.++.+...+.+|...|.++.|+|..
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 99999999999999999999999999999988843 356667778899999999999999999999999999999988
Q ss_pred CEEE-EEe-CCeEEEEECCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 632 EYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 632 ~~La-sgs-Dg~I~IWDl~t~~------------~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
++++ +++ ||.|++||++... ....+..-..|.+.|..++|+.++.++++++.|..+++|+..+|+
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 7655 556 9999999998642 112222344577889999999999999999999999999998775
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=5.8e-20 Score=193.50 Aligned_cols=292 Identities=18% Similarity=0.263 Sum_probs=211.8
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcCC----CeEEEEeccCCCceEEEEEcC-CCCeEEEEe
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSS 511 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs 511 (732)
.+.....++-|.+.|+|++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +-..+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 344566778899999999999954 5788999999999999952 234566788999999999999 456899999
Q ss_pred CCCeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-ccCCeeEEEEeCC
Q 004737 512 ADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPR 588 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~-~~~~i~~v~~sp~ 588 (732)
+||+|++-|++...... ..+......+..+.|+.+...++ .++.=|...+||++++.. ...+. +...|..++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 99999999999754321 12222345567788887765555 555556999999998654 33333 3457999999997
Q ss_pred CCE-EEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC-CCceeEEEeec
Q 004737 589 LGR-ILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELSC 661 (732)
Q Consensus 589 g~~-ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~-~~~~~i~~~~~ 661 (732)
..+ +++++.|++.+|||++.-. ++.....|...|.+.+|+|.+-.|++.+ |..|+|||..-- .......++..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence 655 6778889999999998632 2344456999999999999876677777 999999998411 11122222221
Q ss_pred ---CCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-CCeeE-EEEeCCCCEEEEE-ECCCeEEEe
Q 004737 662 ---TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNGMVASA-SHDKCVKIW 731 (732)
Q Consensus 662 ---~~~~--I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~-~~V~s-la~spdg~~LaSg-s~DG~I~IW 731 (732)
++.. .....|.|+..+++++-.-..|-|||-+.++.+ .+.... ..|.+ ..|+|-+..+++| +..|.|+||
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1122 345689999999999999899999999888865 433322 24444 4789988845554 567888888
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.5e-20 Score=196.27 Aligned_cols=269 Identities=16% Similarity=0.238 Sum_probs=214.7
Q ss_pred CeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcC
Q 004737 402 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 480 (732)
Q Consensus 402 ~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~ 480 (732)
.++-++++|.++..| .++ |..-..++.+.-...+|.+++|.|+|. .+++++.....+.||+.
T Consensus 226 plllvaG~d~~lrif----------------qvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIF----------------QVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred ceEEEecCCCcEEEE----------------Eec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 455566666655555 332 222235666777788999999999999 89999999999999999
Q ss_pred CCeEEE--EeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC
Q 004737 481 SFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 557 (732)
Q Consensus 481 t~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D 557 (732)
+.+... .+.++. ..+.....++++++|+..+..|.|.+....++.. +..++ -.+.|..++|+.+++.++++|+ +
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~~-~ 365 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASGG-T 365 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEcC-C
Confidence 876543 334444 4577788899999999999999999999988664 44444 4678999999999877775554 8
Q ss_pred CcEEEEECCCCeeeeEEeccCCe--eEEEEeCCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCCEEEEEEeC
Q 004737 558 SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 558 g~I~iWDl~t~~~i~~~~~~~~i--~~v~~sp~g~~ll~~s~dg~I~IwDl~t------~~~i~~l~~h~~~V~sla~sp 629 (732)
|.|++||++...|++.+...+.+ +.++.++++.++++|+..|.|.|||.++ .+++..+..-...|+++.|++
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 89999999999999999877765 5677789999999999999999999764 356666666778899999999
Q ss_pred CCCEEEEEe---CCeEEEEECCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 630 SGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 630 dg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~---~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
|..+|+.++ ++.+++-.+.+. ..+..+.. .-+.++|++|+|.+.++++|...|.|.+|.+.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999988 668999988776 33433333 33568999999999999999999999999874
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-21 Score=213.56 Aligned_cols=226 Identities=19% Similarity=0.355 Sum_probs=190.9
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp 502 (732)
.....+.+||+.+...-..+..|..|+..|++++|++- -.+|++|+.||+|++||++..+...++.+....|.+|.|+|
T Consensus 107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence 34567889999885444556688999999999999984 56889999999999999999999999999999999999999
Q ss_pred -CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEeccCC
Q 004737 503 -SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSG 579 (732)
Q Consensus 503 -dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~~~~~ 579 (732)
.+.+|+++...|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|+.|+|||..+.+ .+.++....+
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap 265 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP 265 (839)
T ss_pred CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence 57889999999999999999998888999999999999999996 6788899999999999998654 4455666678
Q ss_pred eeEEEEeCCCCEEEEEEc---CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCC
Q 004737 580 ATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
+.++.|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |...+.+++ |++|..-.+++.
T Consensus 266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999999998776555443 679999999876 55677888999999999976 455777777 888776666554
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4.6e-20 Score=200.33 Aligned_cols=270 Identities=19% Similarity=0.278 Sum_probs=213.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+.||+|+.|+.|.||+-.-.. ..-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---eee
Confidence 699999999999888775 4589999999999999999999999999999999999999999999999865432 223
Q ss_pred ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 611 (732)
Q Consensus 532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~ 611 (732)
..|.+.|.|+.|+|-. ..+++|+- ...-+|...... +...+....+.+++|..||.+++.|-.+|+|.+-+-...+.
T Consensus 90 YSH~D~IQCMsFNP~~-h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT-HQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchH-HHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 4599999999999984 56668874 346788876433 33344446788999999999999999999999986543322
Q ss_pred EEE--EcCCCCCEEEEEEeCCC-----CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737 612 RLK--LQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 683 (732)
Q Consensus 612 i~~--l~~h~~~V~sla~spdg-----~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~ 683 (732)
+.. -.+..++|.+|+|+|.. ..+++.. ..++.+|.+.. ..+..-...+....|+.+.++|.++++|++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence 222 22467899999999963 3566666 66777777754 334333344556678899999999999999
Q ss_pred CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 684 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 684 dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|+.+.+|.-+.-.+-++...+.+|+.++..|++.+++.|+.||+|-.|+
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999654433336667888999999999999999999999997654
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=191.44 Aligned_cols=258 Identities=14% Similarity=0.173 Sum_probs=200.5
Q ss_pred CceeeeeecCCCceeEEEEEecCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H-~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg 504 (732)
+..+.+|+...++... .++++| .+.|.+++|++ +..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+
T Consensus 46 ~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~ 122 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN 122 (691)
T ss_pred CCcEEEEccCCCceee--EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc
Confidence 4456666666655433 344444 46799999994 5578888889999999999999999999999999999999999
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----ccC
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQS 578 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-----~~~ 578 (732)
..++.||.||.+..++...+..... .+...++.|.+++|+|++.. +++|+.||.|++||..++..+.... ...
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 9999999999888888877654333 34455689999999999744 5599999999999999988777332 112
Q ss_pred ----CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-
Q 004737 579 ----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK- 652 (732)
Q Consensus 579 ----~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~- 652 (732)
-|.++.|-. .+.|++|...|.|.+||...+..+..+..|...|.+++..+++.++++++ |+.|..|...+...
T Consensus 202 ~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 202 REPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred CCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence 155666664 47899999999999999999999999999999999999999988888888 99888888776543
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
.........|...+.+++..++ .+++|+.|..+.+-
T Consensus 281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred eeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 1222334456677777777666 56666666555443
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.1e-17 Score=180.33 Aligned_cols=300 Identities=28% Similarity=0.437 Sum_probs=238.6
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
...+..+.+|+... .......+..|...|.+++|+|+++++++++. |+.+++|++..++.+..+.+|...|.+++|+
T Consensus 130 ~~~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 130 SSLDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred CCCCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 34467889998876 23456778999999999999999999998885 9999999999988999999999999999999
Q ss_pred CCCC-eEEEEeCCCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-ecc
Q 004737 502 PSLS-RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQ 577 (732)
Q Consensus 502 pdg~-~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~-~~~ 577 (732)
|++. ++++++.|+.|++||...+.. .. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+.
T Consensus 208 ~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 284 (466)
T COG2319 208 PDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284 (466)
T ss_pred CCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCC
Confidence 9988 555558999999998885543 44 688888775 44899997 5666899999999999987664 4333 334
Q ss_pred CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEE-e-CCeEEEEECCCCCCc
Q 004737 578 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKG 653 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasg-s-Dg~I~IWDl~t~~~~ 653 (732)
..+.++.|.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++....
T Consensus 285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-- 362 (466)
T COG2319 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-- 362 (466)
T ss_pred ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--
Confidence 678999999988888888889889999999887666665 788889999994332556655 4 8889999998763
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~s-gs~dg~I~IwDl~t~~~~~~~~h~-~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
....... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|
T Consensus 363 -~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (466)
T COG2319 363 -PLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439 (466)
T ss_pred -eeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence 2222222 22288888988 543444 577889999999998888555444 889999999999999999999999999
Q ss_pred C
Q 004737 732 K 732 (732)
Q Consensus 732 D 732 (732)
+
T Consensus 440 ~ 440 (466)
T COG2319 440 D 440 (466)
T ss_pred e
Confidence 6
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=190.60 Aligned_cols=243 Identities=19% Similarity=0.361 Sum_probs=190.5
Q ss_pred EEEEEcC-------CCCEEEEEECCCcEEEEEcCCCe---EEE------------------EeccCCCceEEEEEcCC-C
Q 004737 454 ESCHFSP-------DGKLLATGGHDKKAVLWCTESFT---VKS------------------TLEEHTQWITDVRFSPS-L 504 (732)
Q Consensus 454 ~~lafSp-------dg~~Lasgs~Dg~I~VWd~~t~~---~~~------------------~l~~h~~~V~~l~fspd-g 504 (732)
.|++|.. -|+|+|.|+.|..|.|||+.=.. +.. .-.+|++.|.+++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 36799999999999999975211 111 12369999999999875 5
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCCeeEE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQM 583 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~i~~v 583 (732)
+.||+|+.|.+|++||+.+++ +..++..|...|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 689999999999999999987 57888889999999999999999999999999999999984 3444566777899999
Q ss_pred EEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737 584 RFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 584 ~~sp~g~~-ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
+|.+.... +++++.||.|+-+|+|.. +++.+++.|..+|.+|+++..-. ++++++ |+.|++|++..... ..++..
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 99997654 667778899999999986 99999999999999999998654 566666 99999999976432 222222
Q ss_pred ecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEE
Q 004737 660 SCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~t~~~~ 698 (732)
...-+...|+++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222344677788887755 555566667999999887654
No 148
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.4e-17 Score=179.58 Aligned_cols=284 Identities=30% Similarity=0.503 Sum_probs=228.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-EEEEeccCC-CceEEEEE-cCCCC-eEEEEeC-CCeEEEE
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHT-QWITDVRF-SPSLS-RLATSSA-DRTVRVW 519 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~I~IW 519 (732)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999999999999999999999999886 666666644 37777777 78877 5555445 9999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEE-E
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA-A 596 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~-s 596 (732)
|+.........+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+.. ...+.+++|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99973445788899999999999999986 5556664 99999999998788877774 5679999999988744444 8
Q ss_pred cCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 597 IENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 597 ~dg~I~IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
.|+.|.+||...+.... .+.+|...+ ...|++++.++++++ |+.+++|++..... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999887777 688888775 448999998888777 99999999987643 23333567889999999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EE--ccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEeC
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-TL--SAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 732 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~~--~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWD 732 (732)
+..+++++.|+.+.+||....... .. ..|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888888888999999888766 33 3788789999994332455555 6888898885
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-19 Score=190.96 Aligned_cols=248 Identities=17% Similarity=0.243 Sum_probs=199.8
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
.-+.|+.+++|.-... ..++..++.-. +.-+|++......|+++|+..+.|+|||+....+.+.+++|...|+++.|
T Consensus 52 s~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y 129 (673)
T KOG4378|consen 52 SMAGDKVMRIKEKDGK--TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY 129 (673)
T ss_pred ecCCceeEEEecccCC--CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe
Confidence 4567888898875544 22333332211 24456666556689999999999999999977777888999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cc
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQ 577 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~ 577 (732)
+....|||+++..|.|.|..+.++.. ...|. +....|.-+.|++..+.+|.+++++|.|.+||+.....+..+. +.
T Consensus 130 N~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs 208 (673)
T KOG4378|consen 130 NNTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS 208 (673)
T ss_pred cCCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence 99999999999999999999998764 33333 2345677999999999999999999999999998777665554 44
Q ss_pred CCeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737 578 SGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 655 (732)
Q Consensus 578 ~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~ 655 (732)
.+...++|+|... .|++.+.|..|++||++..+....+. ...+...++|.++|.+|++|. .|.|..||++..+ .+
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--AP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CC
Confidence 5678899999754 46678899999999999877666665 567899999999999999999 9999999999764 67
Q ss_pred EEEeecCCCceEEEEEeCCC
Q 004737 656 IHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 656 i~~~~~~~~~I~sl~fspdg 675 (732)
+..+..|...|++++|-+.-
T Consensus 286 v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 286 VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEeeecccceeEEEeeecc
Confidence 77888899999999998765
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=186.54 Aligned_cols=243 Identities=18% Similarity=0.363 Sum_probs=185.8
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcC----------------CCeEEEEeccCCCceEEEEEcCC-CCeE
Q 004737 447 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 507 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~----------------t~~~~~~l~~h~~~V~~l~fspd-g~~L 507 (732)
..|.+.|+.+..++-+ .+.|+-+..|.|.|||+. ..+.++++.+|...=+.++|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4577777777777644 466777888999999974 23567888899999999999993 3358
Q ss_pred EEEeCCCeEEEEecCCCCcee--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEeccCCeeE
Q 004737 508 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ 582 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~~~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---~~i~~~~~~~~i~~ 582 (732)
++|..-+.|++|...++...+ +.+.+|+..|..++|+|..+.+|++|+.||+|+|||++.+ .++.+-.+.+.|..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888899999998876543 4577899999999999999999999999999999999987 56666556778999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCC---CeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCcee--
Q 004737 583 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGEC-- 655 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t---~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~-- 655 (732)
+.|+.....|++|+.||+++|||++. +.++..++-|+.+|++|.|+|.. ..|++++ |..|.|||+......+.
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999988899999999999999985 47788999999999999999964 3444444 99999999865422110
Q ss_pred -------------EEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 004737 656 -------------IHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 690 (732)
Q Consensus 656 -------------i~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~Iw 690 (732)
+..+..-...+..+.|++.-. ++++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 111111234466678888654 344445555 4444
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.6e-21 Score=218.62 Aligned_cols=274 Identities=20% Similarity=0.304 Sum_probs=215.5
Q ss_pred EEEEcCCCC-EEEEE----------ECCCcEEEEEcCCC------eEEEEeccCCCceEEEEEcCCCCe----EEEEeCC
Q 004737 455 SCHFSPDGK-LLATG----------GHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 513 (732)
Q Consensus 455 ~lafSpdg~-~Lasg----------s~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~l~fspdg~~----Lasgs~D 513 (732)
.++|+|++. ++|+| +.+.++.||.+... +.+..+. -....++++|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 55554 33556677755422 2222232 3456889999987665 8899999
Q ss_pred CeEEEEecCCC-----CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEE
Q 004737 514 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 585 (732)
Q Consensus 514 g~I~IWDl~s~-----~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~ 585 (732)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+.+-+.-.... ..+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998752 123456788999999999999999999999999999999998755444332 3466999999
Q ss_pred eCCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEeCCCC-EEEEEe--CC--eEEEEECCCCCCceeEE
Q 004737 586 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 657 (732)
Q Consensus 586 sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~--~V~sla~spdg~-~Lasgs--Dg--~I~IWDl~t~~~~~~i~ 657 (732)
+..-.+|+ +++.+|.+.|||++..+.+..+..+.. .+..|+|+|+.. .|++++ |+ .|.+||++... ..++
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98766555 566678999999999988888776544 577899999863 444555 33 89999998764 5667
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEe
Q 004737 658 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 731 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IW 731 (732)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+....+++..+.|+|... .++.++-||.|-|+
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88999999999999999999999 6777788999999999876 88888999999987
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.9e-19 Score=194.65 Aligned_cols=131 Identities=22% Similarity=0.344 Sum_probs=106.8
Q ss_pred cCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeE------EEEeccCCCceEEEEEcCCCCe
Q 004737 434 VGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV------KSTLEEHTQWITDVRFSPSLSR 506 (732)
Q Consensus 434 ~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~------~~~l~~h~~~V~~l~fspdg~~ 506 (732)
.+.|..-+.+..+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-. ...+.+..-.|.|+.|+|...-
T Consensus 63 ~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg 142 (1012)
T KOG1445|consen 63 TAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG 142 (1012)
T ss_pred cccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc
Confidence 345555667888999999999999999 555899999999999999884321 1223334557899999997666
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
|+..+..|+++|||+.+.+ .+..+.+|.+.|.+..|+.|| .++++++.|..|+|||.+
T Consensus 143 il~s~a~g~v~i~D~stqk-~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 143 ILASGAHGSVYITDISTQK-TAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred eEEeccCceEEEEEcccCc-eeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCc
Confidence 6666688999999999876 688899999999999999997 577788899999999875
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.3e-19 Score=179.79 Aligned_cols=269 Identities=17% Similarity=0.278 Sum_probs=205.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCC------------eEEEEec-cCCCceEEEEEc-------CCCCeEEEEe
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSS 511 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~------------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasgs 511 (732)
-...+.|+|||..|++-+.|..+.+|++..- +....++ .....|.+.+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3567999999999999999999999987521 1111111 133568888885 5678999999
Q ss_pred CCCeEEEEecCCCCceeEEee--cCCc---ceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeee---EEec-----c
Q 004737 512 ADRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAG---VFKC-----Q 577 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~~~~l~--~h~~---~V~sl~fspdg~~llaSgs~Dg~I~iWDl-~t~~~i~---~~~~-----~ 577 (732)
.|.-|++||.-+++. ...+. .|.+ ...+++|+|||..++ ++....|++||+ +.|.-.. ++.. .
T Consensus 131 r~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999998874 22332 2333 346899999998777 445788999999 5554222 1111 2
Q ss_pred CCeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCce
Q 004737 578 SGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGE 654 (732)
Q Consensus 578 ~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~ 654 (732)
+-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|. |..|..||++... .
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~ 285 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--D 285 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--c
Confidence 4478899999765 677888888999999999999999999999999999999999999998 8899999998753 3
Q ss_pred eEEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 655 CIHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 655 ~i~~~~~~~~---~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-~~~~-~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
.+..+..|.. .-.-+...|++++|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.+++|++..
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 4444443332 223345678999999999999999999988 6644 677899999999999998888887643
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=2.2e-19 Score=195.35 Aligned_cols=250 Identities=16% Similarity=0.237 Sum_probs=188.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--eccCCCceEEEEEcCC-CCeEEEEeCCCeEEEE
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 519 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IW 519 (732)
+..+..|.+.|..+.|-|....|++++.|.++++||+++.+++.. +.+|.+.|.+++|.++ ...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 345678999999999999666899999999999999999888766 8899999999999994 5689999999999999
Q ss_pred ecCCCCc--------------------------eeEEeecCCcceEE---EEEcCCCCcEEEEEeC-CCcEEEEECCCCe
Q 004737 520 DTENPDY--------------------------SLRTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGS 569 (732)
Q Consensus 520 Dl~s~~~--------------------------~~~~l~~h~~~V~s---l~fspdg~~llaSgs~-Dg~I~iWDl~t~~ 569 (732)
|++.... .++....+...|.+ +.+..|. ..|++++. |+.|+|||+++..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccc
Confidence 9874320 01112234444444 4444554 45556665 9999999998765
Q ss_pred eeeEEe---------c---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCC--EEEEEEeCCCCE
Q 004737 570 CAGVFK---------C---QSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEY 633 (732)
Q Consensus 570 ~i~~~~---------~---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~--V~sla~spdg~~ 633 (732)
+..... + .-++.++..+..|.++++.+.|+.|++|++.+. .++..+.++... ...-+.+||+.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 443221 1 234778888888999999999999999999864 344444443322 122356899999
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 004737 634 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~ 695 (732)
|++++ |...++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 332 l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999 9999999998764 3455667888999999998854 33777788889999999654
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=7.8e-19 Score=182.85 Aligned_cols=278 Identities=17% Similarity=0.258 Sum_probs=209.3
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC---------eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 450 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 450 ~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~---------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
..+|..+.|.++.. .||||+.|..|+||-++.. +....+..|...|++|.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999776 9999999999999977532 2345677899999999999999999999999999999
Q ss_pred ecC--------C-----C--CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEE
Q 004737 520 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQM 583 (732)
Q Consensus 520 Dl~--------s-----~--~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v 583 (732)
... + . ....+.+.+|...|..++|+|++ .++++++.|..+++||+..|.....+..+. -+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 765 2 1 12345678899999999999996 566699999999999999999998887554 48889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------C-----------CC----CCEEEEEEeCCCCEEEEEe--
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------G-----------HK----NQVHSVCWNTSGEYLASVS-- 638 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--------~-----------h~----~~V~sla~spdg~~Lasgs-- 638 (732)
+|.|.+.++++-+.|...+++++.....+.... . |. .-...++|+|+|.+|++.+
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999998888877777665433222111 0 11 1235678999999988754
Q ss_pred ---CCe-----EEEEECCCCCCceeEEEeecCCCceEEEEEeC-----------------CCCEEEEEEcCCeEEEEECC
Q 004737 639 ---DEL-----VRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 639 ---Dg~-----I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp-----------------dg~~L~sgs~dg~I~IwDl~ 693 (732)
++. .++|+-... ..++..+.+...+...+.|+| -.+.+++....+.|+|||..
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred eeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 333 345544322 234444555555555544443 13446667777799999999
Q ss_pred CCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 694 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 694 t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+..++ .-.-|-..|++++|++||.+|+..+.||.+.+
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 98877 34468899999999999999999999997643
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=1.7e-19 Score=190.10 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=200.8
Q ss_pred EEcCCCeEEEEeccCCCceEEEEEcCCC--CeEEEEeCCCeEEEEecCC---CCceeEEeecCCcceEEEEEcCCCCcEE
Q 004737 477 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLL 551 (732)
Q Consensus 477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~s---~~~~~~~l~~h~~~V~sl~fspdg~~ll 551 (732)
+|+.+......++.+.+.|++++|+|.. +++|+|..-|.|-+||+.+ ....+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444445555667788999999999954 5888999999999999952 2223567888999999999999988888
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEE
Q 004737 552 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 627 (732)
Q Consensus 552 aSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~ 627 (732)
++.+.||+|++-|++.......+.. ......+.|+.+...++++..-|.+.+||+++... ...+.-|...|.+|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999987654433332 23366778888888889998888999999998754 5566678889999999
Q ss_pred eCCC-CEEEEEe-CCeEEEEECCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEE
Q 004737 628 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 700 (732)
Q Consensus 628 spdg-~~Lasgs-Dg~I~IWDl~t~~~~~-~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~----t~~~~~~ 700 (732)
+|-. .+|++++ |++++|||++...... ++.....|...|.++.|||++-.|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9975 4677778 9999999998754433 344455688999999999999889999999999999984 3333334
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 701 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 701 ~~h~~------~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..|.. ......|.|+..+|++|-.-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 44432 234568999999999999888888875
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.6e-20 Score=212.66 Aligned_cols=243 Identities=19% Similarity=0.353 Sum_probs=202.1
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCcEEEEEcCCC------eEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEE
Q 004737 451 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW 519 (732)
Q Consensus 451 ~~V~~lafSpdg~~----Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IW 519 (732)
.+.++++|.+.|.. ||.|..||.|.+||.... ..+.++..|++.|..+.|++.. ++||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45788999987765 888999999999998652 3456677899999999999965 499999999999999
Q ss_pred ecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC---eeEEEEeCCCCE-EEE
Q 004737 520 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 594 (732)
Q Consensus 520 Dl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~---i~~v~~sp~g~~-ll~ 594 (732)
|+.+.+.+... .....+.|.+++|+..-..+|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986543332 2224578999999988889999999999999999998887776665444 778999998654 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE
Q 004737 595 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 668 (732)
Q Consensus 595 ~s~dg---~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~s 668 (732)
++.|. .|.+||++.. ..+..+.+|...|.++.|++.+ ++|++++ |+.|.+|+..++ +.+.++...++++..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999865 5677788999999999999976 7778777 999999999998 888899888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 004737 669 CVFHPTFP-SLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 669 l~fspdg~-~L~sgs~dg~I~IwDl~t~~ 696 (732)
+.|+|... .+++.+-||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999886 67788889999999987655
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.2e-19 Score=177.76 Aligned_cols=242 Identities=18% Similarity=0.271 Sum_probs=182.6
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 562 (732)
Q Consensus 487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~----~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i 562 (732)
.+++|.+.|++++|+.||++|+|++.|++|+||+++.-.. +++.-. ..+..+.+.|.||-..+++++-....+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4679999999999999999999999999999999986321 111111 12356889999999889989988889999
Q ss_pred EECCCCe---eeeEE----------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 563 WSINNGS---CAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 563 WDl~t~~---~i~~~----------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
|.+...+ ....+ ++.-.+..+-....+.+|++++.|..|.+||++ |+.+..+......-+..+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9875322 11111 112235566667778899999999999999999 888888777666777889999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------e
Q 004737 630 SGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------K 696 (732)
Q Consensus 630 dg~~Lasgs-Dg~I~IWDl~t~~-----~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~-------~ 696 (732)
+|++|++++ .-.|+||.+--.+ ....+..+.+|...|..++|+++...+++++.||+++|||+.-. +
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 999999998 7789999874322 12356678899999999999999999999999999999998422 1
Q ss_pred EE-E----EccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 697 TL-T----LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 697 ~~-~----~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.+ . +..-.+....++.+|.+..|+.+. ...+++|
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 12 1 112233445899999999887653 3345544
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=6.5e-19 Score=181.68 Aligned_cols=241 Identities=22% Similarity=0.337 Sum_probs=190.7
Q ss_pred ccCCCceEEEEEcCCC--CeEEEEeCCCeEEEEecCC---------------CCceeEEeecCCcceEEEEEcCCCCcEE
Q 004737 489 EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 551 (732)
Q Consensus 489 ~~h~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~s---------------~~~~~~~l~~h~~~V~sl~fspdg~~ll 551 (732)
..|.+.|..++-++-+ .+.++-+..|.|.|||+.. ...++.++.+|...=+.|+|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577888888877644 4556667789999999862 1235678889999999999999665667
Q ss_pred EEEeCCCcEEEEECCCCeeee----EEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 004737 552 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 623 (732)
Q Consensus 552 aSgs~Dg~I~iWDl~t~~~i~----~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~ 623 (732)
++|+.-+.|++|...++.-.. ...+...|..++|+|.. +.|++++.||.|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 788888899999988765432 12245668899999964 56778889999999999987 44444 77999999
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE----
Q 004737 624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 697 (732)
Q Consensus 624 sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~---- 697 (732)
.|.|+.+-.+|++|+ ||+++|||++..+...++..++.|..+|+++.|+|.. ..|++++.|..|.+||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 8999999999988888999999999999999999965 5688888999999999853221
Q ss_pred -------------EEEccC--CCCeeEEEEeCCC-CEEEEEECCCeEEEe
Q 004737 698 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 731 (732)
Q Consensus 698 -------------~~~~~h--~~~V~sla~spdg-~~LaSgs~DG~I~IW 731 (732)
..++-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 023344 3568889999864 5899999999 5555
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=182.96 Aligned_cols=270 Identities=14% Similarity=0.296 Sum_probs=199.0
Q ss_pred EEEcCCCCEEEEEECCC-----cEEEEEcCCCeEEEEeccCC-----CceEEEEEcC-------CCCeEEEEeCCCeEEE
Q 004737 456 CHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHT-----QWITDVRFSP-------SLSRLATSSADRTVRV 518 (732)
Q Consensus 456 lafSpdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~~h~-----~~V~~l~fsp-------dg~~Lasgs~Dg~I~I 518 (732)
+.+-|...+|+++-.+. .|+||+-..- .+..|. ....|++|.. .|+|+|.|+.|..|.|
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~----nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE----NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCc----ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 44556556666664332 3455553331 111222 2346777743 3689999999999999
Q ss_pred EecCCCC--ceeE------------------EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-c
Q 004737 519 WDTENPD--YSLR------------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q 577 (732)
Q Consensus 519 WDl~s~~--~~~~------------------~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~ 577 (732)
||++--. .+.. .-.+|++.|.++.|+..-+++|++|+.|.+|++||+.++++...+.+ .
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 9987221 1111 12369999999999998899999999999999999999999999984 5
Q ss_pred CCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCc
Q 004737 578 SGATQMRFQPRL-GRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG 653 (732)
Q Consensus 578 ~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i-~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~ 653 (732)
..|.++.|+|.. ..+++|+.|++|.++|.+..... ..++ ..+.|-.++|.|.....+.++ ||+|+-+|+|...
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-- 363 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-- 363 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC--
Confidence 669999999964 56788999999999999953222 2222 456899999999876544444 9999999999865
Q ss_pred eeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCC---CCeeEEEEeCCCC-EEEEEECCCeE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHD---KLVSSLAASTVNG-MVASASHDKCV 728 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~~~~~h~---~~V~sla~spdg~-~LaSgs~DG~I 728 (732)
+++.++..|...|.+++++..- ..+++++.++.|++|++..........|. +...|+++.|+-- +++.|+..+.+
T Consensus 364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence 7899999999999999999876 45778888999999998765554333332 2356677777654 67788888899
Q ss_pred EEeC
Q 004737 729 KIWK 732 (732)
Q Consensus 729 ~IWD 732 (732)
+|||
T Consensus 444 ~vwd 447 (463)
T KOG0270|consen 444 RVWD 447 (463)
T ss_pred EEee
Confidence 9997
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=7.9e-17 Score=174.70 Aligned_cols=285 Identities=12% Similarity=0.124 Sum_probs=194.5
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcC-CCeE--EEEeccCCCceEEEE
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SFTV--KSTLEEHTQWITDVR 499 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWd~~-t~~~--~~~l~~h~~~V~~l~ 499 (732)
..+..+++|+..+...+..+..+.. .+....++++||+++|++++ .++.|.+|++. +++. +.... ..+....++
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~ 86 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS 86 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence 3456778888864444555666653 45677899999999987765 57899999986 3432 22222 334567899
Q ss_pred EcCCCCeEEEEeC-CCeEEEEecCCCCce---eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee---
Q 004737 500 FSPSLSRLATSSA-DRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--- 572 (732)
Q Consensus 500 fspdg~~Lasgs~-Dg~I~IWDl~s~~~~---~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~--- 572 (732)
|+|++++|++++. ++.|.+|++++.... +..+. +.....+++|+|+++.++++...++.|.+||+.+...+.
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~ 165 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE 165 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence 9999999888875 889999999753321 22222 334567789999998888888888999999997633221
Q ss_pred ----EEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEcCC------CCCEEEEEEeCCCCEEEEE
Q 004737 573 ----VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------KNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 573 ----~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t--~--~~i~~l~~h------~~~V~sla~spdg~~Lasg 637 (732)
..........+.|+|++++++++.. ++.|.+||++. + +.+..+..+ ......+.|+|++++++++
T Consensus 166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 1122345778999999999988877 89999999973 2 333333221 1233468899999999988
Q ss_pred e--CCeEEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEEE--EccCCCCeeE
Q 004737 638 S--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTLT--LSAHDKLVSS 709 (732)
Q Consensus 638 s--Dg~I~IWDl~t~~-~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~--t~~~~~--~~~h~~~V~s 709 (732)
. ++.|.+|++.... ..+.+..... ......+.|+|+|++|+++.. +++|.+|++. ++.... .........+
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~ 324 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMW 324 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceE
Confidence 6 6799999996542 1223333322 234567899999999998886 7799999874 444331 1122344555
Q ss_pred EEE
Q 004737 710 LAA 712 (732)
Q Consensus 710 la~ 712 (732)
++|
T Consensus 325 ~~~ 327 (330)
T PRK11028 325 VSV 327 (330)
T ss_pred EEE
Confidence 555
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.6e-18 Score=187.31 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=197.8
Q ss_pred EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737 485 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 485 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD 564 (732)
-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.....+++.+.+..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345689999999999999999999999999999999999875 55554 4568999999998765444444444444443
Q ss_pred CCCC--------------------------------------eeeeEEeccCCeeEEEEeCCCCEEEEEEcC---CeEEE
Q 004737 565 INNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISI 603 (732)
Q Consensus 565 l~t~--------------------------------------~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d---g~I~I 603 (732)
..-| .....+.+...|..+.|+..|.+|+++..+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2211 012345566778999999999999998775 47999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737 604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 683 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~ 683 (732)
+++.......-|....+.|.++.|+|...+|++++-..|+|||+... ..++.+......|..++++|.|..|++++.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99988776666666778899999999999999999999999999875 555666666778999999999999999999
Q ss_pred CCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 684 YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 684 dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
|+.+..||+.-.... ++..|...|++++|++.-.++++|+.||.+.||
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999765333 788999999999999999999999999999986
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.7e-18 Score=172.54 Aligned_cols=233 Identities=15% Similarity=0.240 Sum_probs=180.8
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004737 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~ 574 (732)
..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|..+|.+++|+++|..++ +++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~Ll-tsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLL-TSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEee-eecCCceeEEEeccCCCceeEE
Confidence 7899999999999999999999999999866 5788999999999999999986555 9999999999999999999999
Q ss_pred eccCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCC----CEEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 004737 575 KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKN----QVHSVCWNTSGEYLASVS-DELVRVWSIG 648 (732)
Q Consensus 575 ~~~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~~~i~~l~~h~~----~V~sla~spdg~~Lasgs-Dg~I~IWDl~ 648 (732)
....+|..+.|+|.... +++.-.+..-.+.++...+...--....+ .-.+..|.+.|+||++|. .|.+.++|..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 99999999999996544 44444444444555543322111111111 123346889999999999 9999999998
Q ss_pred CCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEc-cC-------CCCeeEEEEeCC
Q 004737 649 SGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLS-AH-------DKLVSSLAASTV 715 (732)
Q Consensus 649 t~~~~~~i~~~~~~~-~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~----~~~-~h-------~~~V~sla~spd 715 (732)
+. +++..++... ..|..+.|+..|++|++-+.|..|+.|+++.-... ... .| ...=.+++|+.+
T Consensus 184 t~---e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TL---ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hh---eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 87 7888777666 77899999999999999999999999998642211 000 11 223357889999
Q ss_pred CCEEEEEEC-CCeEEEeC
Q 004737 716 NGMVASASH-DKCVKIWK 732 (732)
Q Consensus 716 g~~LaSgs~-DG~I~IWD 732 (732)
|.|++.++. -..++||+
T Consensus 261 geYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWE 278 (405)
T ss_pred ccEEEeccccceeEEEEe
Confidence 999988773 45788995
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=5.6e-17 Score=175.87 Aligned_cols=265 Identities=10% Similarity=0.183 Sum_probs=183.5
Q ss_pred EEEECCCcEEEEEcCC-Ce--EEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCC-CCceeEEeecCCcceEE
Q 004737 466 ATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVMS 540 (732)
Q Consensus 466 asgs~Dg~I~VWd~~t-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s-~~~~~~~l~~h~~~V~s 540 (732)
++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +................
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 33 445554 345678899999999987765 478999999973 22221111123345678
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCC-Ce---eeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEE--
Q 004737 541 LDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL-- 613 (732)
Q Consensus 541 l~fspdg~~llaSgs~Dg~I~iWDl~t-~~---~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~-- 613 (732)
++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|+++++++++. ++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 999999988887777789999999974 22 2233333345678899999999877665 5899999998632221
Q ss_pred -----EEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeecC------CCceEEEEEeCCCCEEE
Q 004737 614 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 614 -----~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~-~~~~~i~~~~~~------~~~I~sl~fspdg~~L~ 679 (732)
... .......++|+|++++++++. ++.|.+|++... ...+.+..+... ......+.|+|++++++
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 111 233467899999999998887 789999999742 122334333221 11234688999999999
Q ss_pred EEEc-CCeEEEEECCCCe-EEEEccC---CCCeeEEEEeCCCCEEEEEEC-CCeEEEeC
Q 004737 680 VIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 732 (732)
Q Consensus 680 sgs~-dg~I~IwDl~t~~-~~~~~~h---~~~V~sla~spdg~~LaSgs~-DG~I~IWD 732 (732)
++.. ++.|.+|++.... ...+..+ ......+.|+|++++|+++.. +++|.||+
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 9865 5699999986432 2222222 235678999999999998775 88999984
No 165
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=201.43 Aligned_cols=274 Identities=18% Similarity=0.291 Sum_probs=217.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
.++.+.+|.+.|+|+.|...|.++++|+.|..|+||..+++.+...+.+|.+.|++++.+.+..++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EEeccCCeeEEEEeCCCCEEEEEE
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~ll~~s 596 (732)
.++. ++..+.+|++.|++|+|+|-- +.+.||++++||.+-.-.+. .+....-+..+.|...+..+++++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9866 688999999999999999973 77889999999988211111 112223466677777788899999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 597 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 597 ~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
.|+.-..|...... .+...+.-+.++.+- .+.+++- +-.+++|++.++ ...+.+.+|...++.+.++|-
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence 99888877664321 122222223333232 3344444 779999999988 677788889999999999997
Q ss_pred CCEE-EEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 675 FPSL-LVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 675 g~~L-~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
...+ ..++.||...|||+-.+..+ ...+ ...+...+||+||..++....-|.+.|.
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 7554 56788999999999998877 2334 4567788999999988887777777764
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.7e-18 Score=186.79 Aligned_cols=256 Identities=19% Similarity=0.282 Sum_probs=198.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--------CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 515 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--------t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 515 (732)
.++..|.+.|+.++|.+-...|++|+.|++|.+|++. ..+.+.+|++|.++|.|+++.+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3788999999999999999999999999999999983 24677899999999999999999999999999999
Q ss_pred EEEEecCCC---------CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEE
Q 004737 516 VRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQM 583 (732)
Q Consensus 516 I~IWDl~s~---------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v 583 (732)
|+.|++... ......+.||.+.|+.+++++.... |++|+.||+|+.|+...... .++. .++-...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999965421 1234578899999999999998554 55999999999999876655 2222 22334555
Q ss_pred EEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC-------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737 584 RFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 654 (732)
Q Consensus 584 ~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~-------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~ 654 (732)
.+.... ...++...-+.-.++|.+....+..+.. ....+.-+.++|...+.+++. |+.|+++|..++ .
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---~ 522 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---K 522 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---c
Confidence 554432 2233333334444455554443333332 123577888999998888888 899999999988 7
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 704 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~ 704 (732)
.++....|...++++++.|+|.+|++++.|+.+++|.+....++ ....|.
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 88888899999999999999999999999999999999776665 333443
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=171.46 Aligned_cols=285 Identities=19% Similarity=0.199 Sum_probs=203.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
++..+++|.+.|+|+.|-.++ +|.+|..-|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|..+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 456788999999999998877 58899999999999999988888887 67788999998887 5688888999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCC--------CcEEEEEeCCC-cEEEEECCCCeeeeEEe-----ccCCeeEEEEe
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSK--------EDLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ 586 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg--------~~llaSgs~Dg-~I~iWDl~t~~~i~~~~-----~~~~i~~v~~s 586 (732)
+....+ ...|.-.++++.|++.. +.+++.-+... .+.+-|......+.... ..+.+.+..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986443 23344556667666431 01111111000 11112221111111111 11234554433
Q ss_pred C-CCC--EEEEEEcCCeEEEEECCCCeE----------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 587 P-RLG--RILAAAIENYISILDVETQVC----------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 587 p-~g~--~ll~~s~dg~I~IwDl~t~~~----------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
. ++. .+++|..+|.+.+||+.++.. +.....|..+|.++.|.+....=++++ +..+..|++.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 355667789999999999733 334456889999999987544444555 77899998875421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 653 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 653 -~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
...-.+.......|..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|.+++|+|+..++|+++.|+.|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 1222233334556888999999999999999999999999999988 77899999999999999999999999999999
Q ss_pred eC
Q 004737 731 WK 732 (732)
Q Consensus 731 WD 732 (732)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=9.6e-18 Score=173.11 Aligned_cols=283 Identities=16% Similarity=0.226 Sum_probs=212.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------CeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I 516 (732)
+-+.+|.+-|+++.|+.++++||+|+.|..++||+++. .+.+.... .|...|.|++|.....+|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 44779999999999999999999999999999999863 24444443 355899999999999999999999999
Q ss_pred EEEecCCCCceeEEeecCC---cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe----eeeEEeccCCeeEEEEeCCC
Q 004737 517 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL 589 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~---~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~----~i~~~~~~~~i~~v~~sp~g 589 (732)
.+.|+++.. .+..+. |. +.|+.+..+|. .+++++.+.++.|.+||++... .+...........+.|+|..
T Consensus 130 I~HDiEt~q-si~V~~-~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 130 IKHDIETKQ-SIYVAN-ENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred Eeeecccce-eeeeec-ccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 999999865 343333 43 58999999999 5677788899999999998654 22333344567889999976
Q ss_pred CE-EEEEEcCCeEEEEECCCCe-EEEEE------cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737 590 GR-ILAAAIENYISILDVETQV-CRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 590 ~~-ll~~s~dg~I~IwDl~t~~-~i~~l------~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
.. |++.+..+.+.+||++... .+... ......-.++.|+|+|..|++.- ...-.+||+.+.. ..+..+.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD 284 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence 55 5566677899999998653 22221 11122335788999999888777 4456678887642 1222222
Q ss_pred c------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CeEEEEccCCCCeeEE
Q 004737 661 C------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL 710 (732)
Q Consensus 661 ~------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t------------------------~~~~~~~~h~~~V~sl 710 (732)
. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 1 123467788887776 88888888999998742 1123677999999999
Q ss_pred EEeCCCCEEEEEECCCeEEEeC
Q 004737 711 AASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 711 a~spdg~~LaSgs~DG~I~IWD 732 (732)
.|++...+|++.+....++||.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999999999999993
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.5e-17 Score=170.81 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=186.2
Q ss_pred eccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 488 LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 488 l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
+.+|+++|.+++|+| +...||+||.|.+|.||.+..+. .++..+.+|...|-.+.|+|.-.++|++++.|..|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 468999999999999 56789999999999999987543 34678999999999999999999999999999999
Q ss_pred EEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEeCCCCEEEEEe-
Q 004737 561 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-V~sla~spdg~~Lasgs- 638 (732)
.+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.++.++.+|.
T Consensus 157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence 9999999999999998888999999999999999999999999999999999888778763 34566778888666664
Q ss_pred ---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEE----EEccCCCCeeEE
Q 004737 639 ---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSSL 710 (732)
Q Consensus 639 ---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~----~~~~h~~~V~sl 710 (732)
+..+-+||..+......+.++.. .+.|.---|.+|...++.++ .|+.|+.|++...... .......+=..+
T Consensus 237 r~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~ 315 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGM 315 (472)
T ss_pred cccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccc
Confidence 66899999988766555556653 45566677889888777665 5779999999887643 222334444555
Q ss_pred EEeCCC
Q 004737 711 AASTVN 716 (732)
Q Consensus 711 a~spdg 716 (732)
.|-|..
T Consensus 316 g~mPKR 321 (472)
T KOG0303|consen 316 GFMPKR 321 (472)
T ss_pred cccccc
Confidence 555543
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=172.67 Aligned_cols=266 Identities=17% Similarity=0.295 Sum_probs=190.7
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEEecCCCCcee-EEeecCC-cce
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSL-RTFTGHS-TTV 538 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l~~h~-~~V 538 (732)
..+|++...|.|++||..++..+..++++...+..++|.. ....+.+|+.||+|++||++...... ..+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999977 46789999999999999999765433 3445555 456
Q ss_pred EEEEEcCCCCcEEEEEe----CCCcEEEEECCCCee-eeEEe--ccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCe
Q 004737 539 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVETQV 610 (732)
Q Consensus 539 ~sl~fspdg~~llaSgs----~Dg~I~iWDl~t~~~-i~~~~--~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~ 610 (732)
.|++.... ..++++|. .+-.|.+||++..+. +..+. ++..|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 46776664 367899999998766 54443 56789999999965 567889999999999998652
Q ss_pred E---EEEEcCCCCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCceeEEEeecC------------CCceEEEEEeC
Q 004737 611 C---RLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 673 (732)
Q Consensus 611 ~---i~~l~~h~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~------------~~~I~sl~fsp 673 (732)
. +.....|...|.++.|..++ ++++....++..+|+++.+.. ...+... -..+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 2 22233477889999999887 544444499999999988742 1111110 11122222223
Q ss_pred CCCEEEEEEc-CCeEEEEEC---CCCeEE----EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 674 TFPSLLVIGC-YETLELWNM---TENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 674 dg~~L~sgs~-dg~I~IwDl---~t~~~~----~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+...+++++. .+...++-+ .++... .+. +|...|.++.|.-.+.+++||++||.+.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4444555444 454444433 333332 333 4778899999998899999999999999995
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=4e-17 Score=170.17 Aligned_cols=254 Identities=19% Similarity=0.237 Sum_probs=189.8
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--------C--------CeEEEEeccCCCceEEEEEcC
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------S--------FTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--------t--------~~~~~~l~~h~~~V~~l~fsp 502 (732)
.+.-...+..|...|++|.|+|+|++||+|+.+|.|.+|-.. + ......+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 455677889999999999999999999999999999999655 2 344567789999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------- 575 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------- 575 (732)
|+.++++++.|..+++||+..+. ....+.+|...|..++|.|-+ .++++-+.|...+.+++.....+....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCceeeeeeccceEEEEEeccce-eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 99999999999999999999887 478889999999999999985 455576667766666665433322211
Q ss_pred -------------ccC----CeeEEEEeCCCCEEEEEEc----CC-----eEEEEECCC-CeEEEEEcCCCCCEEEEEEe
Q 004737 576 -------------CQS----GATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLKLQGHKNQVHSVCWN 628 (732)
Q Consensus 576 -------------~~~----~i~~v~~sp~g~~ll~~s~----dg-----~I~IwDl~t-~~~i~~l~~h~~~V~sla~s 628 (732)
+.. -...++|+|+|..+++.+. .+ ..++|+-.. .++...+.....++..+.|+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 111 1345789999988887543 22 345565443 24555555555566666555
Q ss_pred C------------------CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 629 T------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 629 p------------------dg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
| .+..++.++.+.|+|||..+.....++ -..|...|+.++|+++|.++++.+.||...+.
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEE
Confidence 4 334566777889999999886433333 33467889999999999999999999976666
Q ss_pred ECCCCe
Q 004737 691 NMTENK 696 (732)
Q Consensus 691 Dl~t~~ 696 (732)
.++..+
T Consensus 370 tfe~~e 375 (434)
T KOG1009|consen 370 TFEPWE 375 (434)
T ss_pred EEcchh
Confidence 555444
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.7e-17 Score=183.50 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC---CCceEEEEEcC--CCCeEEEEeCCCeEEEEecCCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
...-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 334567889998889999988889999999999988877654 35688998865 5678999999999999974322
Q ss_pred C----ceeEEee---c----CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC--CeeEEEEeC-CCC
Q 004737 525 D----YSLRTFT---G----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQP-RLG 590 (732)
Q Consensus 525 ~----~~~~~l~---~----h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~--~i~~v~~sp-~g~ 590 (732)
. ..+..+. + ..+.-.-++|......++++|+ -..|+|||.....++..+.... .++.+.-+- .|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 1111111 1 1122244677766667775554 7899999999888877766433 355554433 468
Q ss_pred EEEEEEcCCeEEEEECCCC---eEEEEEcCCCCC--EEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecC-
Q 004737 591 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCT- 662 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~--V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~- 662 (732)
.+++|..||.|++||.+.. ..+...+.|... |..+.+.+.|- .|++++ ||.|++||++.... .....+..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999865 346667778877 99999988764 488888 99999999998532 222222222
Q ss_pred --CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-------CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 663 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 663 --~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~-------h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++..+++..+++...+++|+. +.|.||++....+..+.. ..+.+.|++|+|-.-+||+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998888888 999999997766543322 345789999999999999999999999983
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=4.3e-17 Score=163.15 Aligned_cols=292 Identities=18% Similarity=0.240 Sum_probs=202.0
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECC-------CcEEEEEcCC---------CeE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTV 484 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~D-------g~I~VWd~~t---------~~~ 484 (732)
....|.-+.+...+.+...-.-.+|..|.+.|..++-+| |.+.|+++..+ ..+.||.+.. .++
T Consensus 35 slK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~ 114 (370)
T KOG1007|consen 35 SLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC 114 (370)
T ss_pred ccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence 334445555555555544444567889999999999999 55677776543 3578998753 234
Q ss_pred EEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-----ecCCcceEEEEEcCC-CCcEEEEEeCC
Q 004737 485 KSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNN 557 (732)
Q Consensus 485 ~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-----~~h~~~V~sl~fspd-g~~llaSgs~D 557 (732)
+..+. .+-+.|.||.|.|++..+++-. |..|.+|++.+.......+ .+|....++-+|+|. ..+.+++. .|
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d 192 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD 192 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CC
Confidence 44443 4566899999999999998875 8899999999766433222 235667888899982 23444344 48
Q ss_pred CcEEEEECCCCeeeeEEec--cCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCC-C
Q 004737 558 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-E 632 (732)
Q Consensus 558 g~I~iWDl~t~~~i~~~~~--~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg-~ 632 (732)
+++..||+++.++...+.. ...+..+.|+|+..+ |++++.||.|+|||.+.. .++..+.+|..+|.++.|+|.. .
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq 272 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ 272 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence 9999999999888777763 234899999998665 556777899999999864 6788999999999999999964 5
Q ss_pred EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEE
Q 004737 633 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA 711 (732)
Q Consensus 633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla 711 (732)
+|++++ |..|.+|....-..... +.|..+..-.-.......++ -+..+.+.++..|+..|.+++
T Consensus 273 LiLs~~SDs~V~Lsca~svSSE~q-------------i~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 273 LILSGGSDSAVNLSCASSVSSEQQ-------------IEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred EEEecCCCceeEEEeccccccccc-------------cccccccccCcchhhHHhcc--cccccccccccccccceEEEe
Confidence 666666 99999998755321111 11111110000000001122 344555557889999999999
Q ss_pred EeCCCC-EEEEEECCCeEEE
Q 004737 712 ASTVNG-MVASASHDKCVKI 730 (732)
Q Consensus 712 ~spdg~-~LaSgs~DG~I~I 730 (732)
|+.-.. ++|+-+.||+|.|
T Consensus 338 WSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVII 357 (370)
T ss_pred eccCCCeeEEEeccCceEEe
Confidence 987665 6778899999876
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=9.7e-17 Score=163.31 Aligned_cols=242 Identities=19% Similarity=0.283 Sum_probs=183.9
Q ss_pred CCCCCeEEEEEcCCC----CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecC
Q 004737 448 ASTSKVESCHFSPDG----KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 448 ~H~~~V~~lafSpdg----~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~ 522 (732)
.|....+.|+|+-|. .++|.|+.-|.|+|.|+.+++....+.+|...|..|.|.|+ .++++++|.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 367778889998753 47999999999999999999999999999999999999996 4689999999999999999
Q ss_pred CCCceeEE---eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------------------------
Q 004737 523 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 575 (732)
Q Consensus 523 s~~~~~~~---l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------------------------ 575 (732)
+..+ +.. +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....++
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8764 444 467999999999999986 66699999999999998433211111
Q ss_pred -----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CC-------------eEEEEEcCCCCCEEEEEE--eCCCCEE
Q 004737 576 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQ-------------VCRLKLQGHKNQVHSVCW--NTSGEYL 634 (732)
Q Consensus 576 -----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~-------------~~i~~l~~h~~~V~sla~--spdg~~L 634 (732)
+...|.|+.|- |+++++-+.++.|..|..- -. ..+.++.-....|+-|.| ++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 00112223332 4678888889999999872 11 122333334455666554 5668899
Q ss_pred EEEe-CCeEEEEECCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 635 ASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 635 asgs-Dg~I~IWDl~t~~~~~~i-~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
+.|. .|.|.+||++..+...+- ..-......|...+|+.|+..|+..+.|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9988 899999999987653222 1222345678999999999999999999999999864
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=3e-16 Score=170.24 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=108.8
Q ss_pred EEEEEEcCCeEEEEECCCC-------eEEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737 591 RILAAAIENYISILDVETQ-------VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSC 661 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~-------~~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~ 661 (732)
.|++++.||.|++|.+..+ .+...+..|...|+++.|+|= ...|++++ |-+|++||+.+. .....+.+
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~---~~~~~l~g 718 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA---KLYSRLVG 718 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh---hhhheecc
Confidence 6789999999999998753 345667889999999999994 45677777 999999999988 56667889
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCC
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG 726 (732)
|...|..++|+|+|+.+++.+.||+|++|+-++++.....+ -...-..|.|.-||++|++.+.|.
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99999999999999999999999999999988776542221 123345678888999988888765
No 176
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.2e-17 Score=174.00 Aligned_cols=207 Identities=18% Similarity=0.332 Sum_probs=161.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcC--CCCeEEEEeCCCeEEEE
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRVW 519 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IW 519 (732)
...+.||++-|+|++|+.||.+|++|+.|-.+.|||.-..+.++.+ .+|...|.++.|-| +.+++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4568899999999999999999999999999999999988888777 68999999999998 56789999999999999
Q ss_pred ecCC---------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEec----------cCC
Q 004737 520 DTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC----------QSG 579 (732)
Q Consensus 520 Dl~s---------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~~----------~~~ 579 (732)
|+.. .....+.+..|...|..|+..|++.+.+.+++.||+|+-+|++.... -..... --.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9985 23345567789999999999999999999999999999999986321 111100 123
Q ss_pred eeEEEEeCCCC-EEEEEEcCCeEEEEECCCC------------------eEEEEEc-CCC--------C---CEEEEEEe
Q 004737 580 ATQMRFQPRLG-RILAAAIENYISILDVETQ------------------VCRLKLQ-GHK--------N---QVHSVCWN 628 (732)
Q Consensus 580 i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~------------------~~i~~l~-~h~--------~---~V~sla~s 628 (732)
..++.++|... +|++|+.|-..++||.+.. .++..+. +|- . .++.+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 56788898655 5677888899999995321 1122221 121 1 25668899
Q ss_pred CCCCEEEEEe-CCeEEEEECCC
Q 004737 629 TSGEYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 629 pdg~~Lasgs-Dg~I~IWDl~t 649 (732)
|+|.-|++.- ...|+++|+..
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecC
Confidence 9998777666 56899999754
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=8.4e-17 Score=167.01 Aligned_cols=211 Identities=20% Similarity=0.331 Sum_probs=167.0
Q ss_pred CCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCceEEEEEcCC-CCe
Q 004737 436 KGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSR 506 (732)
Q Consensus 436 ~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~V~~l~fspd-g~~ 506 (732)
.|..-..+..+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.
T Consensus 67 ~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 67 TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNV 146 (472)
T ss_pred ccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhh
Confidence 3333344566789999999999999 5568999999999999998643 456778999999999999994 568
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeEEE
Q 004737 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMR 584 (732)
Q Consensus 507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~ 584 (732)
|++++.|.+|.+||+.++.. +..+. |.+-|+++.|+.+| .++++.+.|..|+|||.++++.+..-..+.+ ...+.
T Consensus 147 Llsag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred HhhccCCceEEEEeccCCce-eeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 99999999999999999874 44455 99999999999997 5667999999999999999999887755444 45677
Q ss_pred EeCCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC
Q 004737 585 FQPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 651 (732)
Q Consensus 585 ~sp~g~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~ 651 (732)
|-.++. +++.+. +..+-+||..... ....+. ..+.|.---|++|..+|+.++ |+.|+.|.+....
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 777877 544443 6789999977643 233343 344566666788888888877 8999999998753
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=2.5e-16 Score=181.96 Aligned_cols=291 Identities=18% Similarity=0.223 Sum_probs=208.6
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737 442 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 513 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 513 (732)
.+..+..|...|..++.+++. .++++|+.||+|+|||.... +...++......+.++.+.+.+..+|+++.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 577788999999999998855 89999999999999997632 2233444456789999999999999999999
Q ss_pred CeEEEEecCCCCce------eEEeecC-CcceE-EEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCee
Q 004737 514 RTVRVWDTENPDYS------LRTFTGH-STTVM-SLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGAT 581 (732)
Q Consensus 514 g~I~IWDl~s~~~~------~~~l~~h-~~~V~-sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~ 581 (732)
|.|++.+++..... .+....+ .+.+. .-+|.... ..+++.+...+.|..||++.......++. ++-|+
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999999862211 1111112 22333 33443332 33677777788999999998776665553 46799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCC---CEEEEEe---CCeEEEEECCCCCCce
Q 004737 582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE 654 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg---~~Lasgs---Dg~I~IWDl~t~~~~~ 654 (732)
+++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|-. .+.++++ .+.|.+|++.++....
T Consensus 1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 99999999999999999999999999998888765 245678888777642 4555444 5689999999874322
Q ss_pred eEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--------------------
Q 004737 655 CIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------------- 698 (732)
Q Consensus 655 ~i~~~----------~------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-------------------- 698 (732)
.+..- . .+......+++...+.++++++.|..|+.||....+..
T Consensus 1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~ 1359 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDL 1359 (1431)
T ss_pred EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccc
Confidence 22111 0 11122344555566678999999999999997432200
Q ss_pred -------------------------------------EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737 699 -------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 732 (732)
Q Consensus 699 -------------------------------------~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD 732 (732)
.-..|...|+++++.... .+|++++.||.|+||+
T Consensus 1360 ~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1360 STIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 012366778888876544 5899999999999996
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=2.8e-16 Score=157.53 Aligned_cols=241 Identities=19% Similarity=0.321 Sum_probs=180.5
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEEcCCCe--EE--EEe-----ccCCCceEEEEEcC-CCCeEEEEe
Q 004737 447 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFT--VK--STL-----EEHTQWITDVRFSP-SLSRLATSS 511 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~-----~Lasgs~Dg~I~VWd~~t~~--~~--~~l-----~~h~~~V~~l~fsp-dg~~Lasgs 511 (732)
-.|.-+++.+-|.|+.+ +||+++ ..+++|.+...+ .. ..+ ..+..++++..|+. |.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46889999999999863 567664 489999887422 11 111 34677899999987 778999999
Q ss_pred CCCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-c---cCCeeEEEE
Q 004737 512 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C---QSGATQMRF 585 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~---~~~i~~v~~ 585 (732)
-|-++.|||++++. .....+..|..+|..|+|...+..+|++++.||.||+||++..+-...+. . ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999862 23567888999999999999989999999999999999998765443332 1 234677888
Q ss_pred eCCCCE-EEEEEc-CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCC---ceeEE
Q 004737 586 QPRLGR-ILAAAI-ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH 657 (732)
Q Consensus 586 sp~g~~-ll~~s~-dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~---~~~i~ 657 (732)
++.... +++... ...|.|.|++.. .++.++.+|.+.|+.|+|.|. ...|++++ |..+.|||+..... ..++.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 876554 444444 468999999975 788899999999999999996 46788888 77999999986432 12233
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
.+. .+..|+.+.|++...-.+.+..++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 333 56789999999765444444445555443
No 180
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.7e-16 Score=154.91 Aligned_cols=259 Identities=20% Similarity=0.346 Sum_probs=185.3
Q ss_pred cccCCeeeccccCCceeeccCCCCCCCCCceeeeee-cCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcE
Q 004737 398 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE-VGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA 474 (732)
Q Consensus 398 ~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd-~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I 474 (732)
.+|+.++.+.++|-.-+... .-..|..+++|+ ......+..-...+.|.+.|..+.|.+ -|..+|+++.|++|
T Consensus 10 s~h~DlihdVs~D~~GRRmA----tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMA----TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecccCceee----eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 34445555555543333322 233455667777 333456677778999999999999976 68899999999999
Q ss_pred EEEEcC---------CCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEEEecCCCCce------------eEEe
Q 004737 475 VLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRTF 531 (732)
Q Consensus 475 ~VWd~~---------t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~------------~~~l 531 (732)
.||.-. ......++......|++|.|.|. |-.||+++.||++|||+.-+.... +...
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999641 12344567778889999999994 778999999999999987654311 0112
Q ss_pred ecCCcceEEEEEcCCC--CcEEEEEeCC-----CcEEEEECCCC--eeeeEE---eccCCeeEEEEeCCCC----EEEEE
Q 004737 532 TGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGVF---KCQSGATQMRFQPRLG----RILAA 595 (732)
Q Consensus 532 ~~h~~~V~sl~fspdg--~~llaSgs~D-----g~I~iWDl~t~--~~i~~~---~~~~~i~~v~~sp~g~----~ll~~ 595 (732)
..+..+..|+.|+|.. ..+|+.|+.+ +.++||..... +....- .+..+|+.++|.|.-+ .|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 2466778999999752 4577777755 47888876543 333222 2457799999999643 47788
Q ss_pred EcCCeEEEEECCCC--------------------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737 596 AIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 654 (732)
Q Consensus 596 s~dg~I~IwDl~t~--------------------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~ 654 (732)
+.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||.|++|...-....+
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k 324 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK 324 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence 8899 999998731 23445678999999999999999999988 9999999877665556
Q ss_pred eEEEeec
Q 004737 655 CIHELSC 661 (732)
Q Consensus 655 ~i~~~~~ 661 (732)
|...+..
T Consensus 325 C~sv~~~ 331 (361)
T KOG2445|consen 325 CTSVLKA 331 (361)
T ss_pred eeeEEec
Confidence 6665554
No 181
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=176.57 Aligned_cols=290 Identities=20% Similarity=0.312 Sum_probs=225.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcC--CCCeEEEEeCCCeEEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 518 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~I 518 (732)
....|..|.+.|..|.|...|..|++|+.|..|.+||...++.+..+ .+|...|.-..|-| +...+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34568899999999999999999999999999999999998887766 57999998888988 4567999999999999
Q ss_pred EecCCCCcee--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----C---CeeEEEEeCCC
Q 004737 519 WDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----S---GATQMRFQPRL 589 (732)
Q Consensus 519 WDl~s~~~~~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----~---~i~~v~~sp~g 589 (732)
=.+....+.. +.+..|.++|..++.-|+..+-|.+|+.|+.+.-+|++.+.....+.+. . ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8876554433 4566799999999999999999999999999999999887655444321 1 35678888865
Q ss_pred C-EEEEEEcCCeEEEEECCCCeE------EEEEc------CCCCCEEEEEEeCCC-CEEEEEeCCeEEEEECCCCCC--c
Q 004737 590 G-RILAAAIENYISILDVETQVC------RLKLQ------GHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK--G 653 (732)
Q Consensus 590 ~-~ll~~s~dg~I~IwDl~t~~~------i~~l~------~h~~~V~sla~spdg-~~LasgsDg~I~IWDl~t~~~--~ 653 (732)
. .+++++.|-.+++||.+.-.. +..+. ...-.|+|++|+.++ .+|++..|..|++|.-..+.- .
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 688889999999999875321 22222 223478999999665 555555688999995433211 0
Q ss_pred -------eeEEE-eecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEE
Q 004737 654 -------ECIHE-LSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 654 -------~~i~~-~~~~~~--~I~sl~-fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaS 721 (732)
..++. +++|.+ .|..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+...-|+||.-+|--.+||+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 11222 555543 355554 5688899999999999999999999988 44455558999999999999999
Q ss_pred EECCCeEEEe
Q 004737 722 ASHDKCVKIW 731 (732)
Q Consensus 722 gs~DG~I~IW 731 (732)
++-|..||||
T Consensus 454 SGid~DVKIW 463 (559)
T KOG1334|consen 454 SGIDHDVKIW 463 (559)
T ss_pred cCCccceeee
Confidence 9999999999
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=7.5e-16 Score=173.91 Aligned_cols=258 Identities=18% Similarity=0.233 Sum_probs=188.6
Q ss_pred CcEEEEEcCCC-eEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCcee-----EEeecCCcceEEEEEc
Q 004737 472 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFH 544 (732)
Q Consensus 472 g~I~VWd~~t~-~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~-----~~l~~h~~~V~sl~fs 544 (732)
+.+.||+++.. .....+ .-...|+|++|+| +..++|.|+.+|.|.+||++...... .....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333334 3567899999999 56788899999999999999766421 2345688999999997
Q ss_pred CCCCc-EEEEEeCCCcEEEEECCCCeee------eEE-------eccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 004737 545 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ 609 (732)
Q Consensus 545 pdg~~-llaSgs~Dg~I~iWDl~t~~~i------~~~-------~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~ 609 (732)
.+... -+++++.||.|..|+++.-... ... .....++++.|.+.. ..+++|+.+|.|..-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65333 3448888999999988753321 111 122347889998754 56888888999887443322
Q ss_pred ---e-----EEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE-E
Q 004737 610 ---V-----CRLKLQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL-L 679 (732)
Q Consensus 610 ---~-----~i~~l~~h~~~V~sla~spdg~-~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L-~ 679 (732)
. ....+..|.++|+++.++|-+. ++++++|.+|+||.-.... .++..+..+...+++++|||....+ +
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 1234556889999999999765 4455559999999987321 5566666677779999999988654 5
Q ss_pred EEEcCCeEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 680 VIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++..+|.|.+||+...... ....+....+.+.|++.++.|++|+..|.|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 5556999999999655433 3444566778888999999999999999999985
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=5.7e-16 Score=157.33 Aligned_cols=231 Identities=19% Similarity=0.284 Sum_probs=181.6
Q ss_pred CCeEEEEEc-------CCCCEEEEEECCCcEEEEEcCCCeEEEEecc--CCCc---eEEEEEcCCCCeEEEEeCCCeEEE
Q 004737 451 SKVESCHFS-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRV 518 (732)
Q Consensus 451 ~~V~~lafS-------pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~---V~~l~fspdg~~Lasgs~Dg~I~I 518 (732)
..|...+|- |+..++|+.+.|.-|++||.-+|+....+.. |.+. ..+++|+|||.+|++| ....|+|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence 457888886 5778999999999999999999998877753 4433 4689999999999887 6789999
Q ss_pred EecCCCCc--eeEEe-----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC
Q 004737 519 WDTENPDY--SLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG 590 (732)
Q Consensus 519 WDl~s~~~--~~~~l-----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~ 590 (732)
||+..+.. ..... .+..+.|.|++|+|-....++.++....+-||.-..+.++..+. +.++|+.+.|.++|+
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence 99954332 12222 23367899999999988899999988888898888877777665 456799999999999
Q ss_pred EEEEEEc-CCeEEEEECCCC-eEEEEEcCCCC-CEEE--EEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004737 591 RILAAAI-ENYISILDVETQ-VCRLKLQGHKN-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 664 (732)
Q Consensus 591 ~ll~~s~-dg~I~IwDl~t~-~~i~~l~~h~~-~V~s--la~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~ 664 (732)
+|++|+. +..|..||++.. .++..+..|.+ .-.. ....|++++|++|+ ||.|++||+.+.. ..+..+..+..
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd 341 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSD 341 (406)
T ss_pred eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccccc
Confidence 9999987 679999999964 56667776655 2223 44568899999998 9999999998732 45566667788
Q ss_pred ceEEEEEeCCCCEEEEEEcC
Q 004737 665 KFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~d 684 (732)
.++.++++|--..+++++..
T Consensus 342 ~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccceecCcccceeeeccCc
Confidence 89999999997766665543
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=162.04 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=192.7
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCCCeEEEEe--ccCC-CceEEEEE
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL--EEHT-QWITDVRF 500 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~-~~V~~l~f 500 (732)
...+|+++..+|..+.+ +.+|...++.+.|.. ....+.+|+.||+|++||++.......+ ..+. .+..|++.
T Consensus 49 ngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred CCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 45678999988866555 667777777888876 4567999999999999999987655443 4454 46677777
Q ss_pred cCCCCeEEEEeC----CCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eee
Q 004737 501 SPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCA 571 (732)
Q Consensus 501 spdg~~Lasgs~----Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----~~i 571 (732)
...+..+++|.. |-.|.+||++..+..++ ....|.+.|+++.|+|.+.++|++|+.||.|.+||++.. ..+
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 777888888754 67899999998776444 456799999999999999999999999999999999754 244
Q ss_pred eEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCC------------CCEEEEEEeCCCCEEEEEe
Q 004737 572 GVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK------------NQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 572 ~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------------~~V~sla~spdg~~Lasgs 638 (732)
.++.+...|.++.|..++ +.|.+.+......+|+++.+.+...+.... ..+.......+...++.+.
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG 285 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence 566666779999998775 469999999999999999887655443210 1121111122333444333
Q ss_pred --CCeEEEEECC---CCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 639 --DELVRVWSIG---SGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 639 --Dg~I~IWDl~---t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
-++..++-+. ++.....+..+.+ |..-|.++.|...+..+++|++||.+.+|...
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3455554443 3333344444554 55668888999899999999999999999853
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.8e-15 Score=169.59 Aligned_cols=282 Identities=17% Similarity=0.279 Sum_probs=210.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--C--eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
..|.-.++|.+++|.++++|+|..||.|.||.--. . .....+.=|...|++++|+++|.+|++|+..+.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45777799999999999999999999999996432 1 2234555688899999999999999999999999999999
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------------cCCeeEEEEeCCCC
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 590 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~------------~~~i~~v~~sp~g~ 590 (732)
+++ ...+..-.++|..+.++||++.+. ....|..|.+....+.+....+.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 977 466677789999999999976655 445588899888765554443332 12256789999888
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcC-----C------CCCEEEEEEeCCCCEEEEEe---------CC--eEEEEECC
Q 004737 591 RILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 648 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h------~~~V~sla~spdg~~Lasgs---------Dg--~I~IWDl~ 648 (732)
.++..+..|.|.+||+.+.+.+..+.. + ...++.++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999988766655431 1 22467788888899998864 33 68899877
Q ss_pred CCCCceeEE--EeecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCe----------EE-EEccCCCCeeEEEEe
Q 004737 649 SGSKGECIH--ELSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 713 (732)
Q Consensus 649 t~~~~~~i~--~~~~~~~~I~sl~fsp-dg~-~L~sgs~dg~I~IwDl~t~~----------~~-~~~~h~~~V~sla~s 713 (732)
.......+. ....|+..+...+|.+ ... ..++++.|+.++||-+...+ +. .-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 654433322 2345666665555544 333 68899999999999883322 11 111478899999999
Q ss_pred CCCCEEEEEECCCeEEEeC
Q 004737 714 TVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 714 pdg~~LaSgs~DG~I~IWD 732 (732)
.||. +++++.|++|.|||
T Consensus 519 ~dGs-lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGS-LLAVSFDDTITIWD 536 (792)
T ss_pred CCCc-EEEEecCCEEEEec
Confidence 9995 55567889999997
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=9.3e-16 Score=173.15 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=196.6
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeE--EEE----eccCCCceEEEEE
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KST----LEEHTQWITDVRF 500 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~--~~~----l~~h~~~V~~l~f 500 (732)
..-+|+...... +...+ .-...|+|++|+| +..+||.|..+|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 223 ~~~vW~~~~p~~--Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNPNT--PELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred eEEEEecCCCCC--ceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 566777766521 12222 3456799999999 566788889999999999987655 222 2468999999999
Q ss_pred cCCC--CeEEEEeCCCeEEEEecCCCCceeEEe-----e------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-
Q 004737 501 SPSL--SRLATSSADRTVRVWDTENPDYSLRTF-----T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN- 566 (732)
Q Consensus 501 spdg--~~Lasgs~Dg~I~IWDl~s~~~~~~~l-----~------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~- 566 (732)
..+. .-|++++.||.|+.|+++.-..+.... . .-...+++++|.+...+.++.|+.+|.|..-+..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7643 459999999999999987543322111 1 1234689999999888899999999998873332
Q ss_pred --CCe-----ee-eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEeCCCC-EEEE
Q 004737 567 --NGS-----CA-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLAS 636 (732)
Q Consensus 567 --t~~-----~i-~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~V~sla~spdg~-~Las 636 (732)
... .. ....+.+.+..+.++|-+..++..+.|.+++||... ...++..+..+...|++++|+|... .|++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 222 11 122355779999999998888877779999999988 6677888887888899999999865 5555
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+. ||.|.|||+..... .++..........+.+.|++.|+.|++|...|.+++|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 55 99999999987544 344444444666777888888999999999999999999643
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.4e-15 Score=171.00 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=164.9
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737 471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547 (732)
Q Consensus 471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg 547 (732)
+..|.|||.+... ...+..|...+.+++|+|||+.|++++.+ ..|++||+.++... .+....+....++|+|||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCC
Confidence 4689999987654 45677788889999999999999988754 37999999876532 222222334578999999
Q ss_pred CcEEEEEeCCCcEEE--EECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeEEEEEcCCCCCE
Q 004737 548 EDLLCSCDNNSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQGHKNQV 622 (732)
Q Consensus 548 ~~llaSgs~Dg~I~i--WDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t--~~~i~~l~~h~~~V 622 (732)
+.++++.+.+|.+.| ||+.++...........+....|+|++..+++++ .++...||++.. +.. ..+ .+..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~-- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG-- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--
Confidence 888877777886554 5776666554444445577899999999887766 467777776643 322 222 3433
Q ss_pred EEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCe-EEE
Q 004737 623 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TENK-TLT 699 (732)
Q Consensus 623 ~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl--~t~~-~~~ 699 (732)
.++.|+|||++|+..+...+.+||+.++.. ...... .....+.|+|++++|++++.++.+.+|++ .+++ ...
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 467899999999888744566799987632 111111 12356789999999999999987776664 2344 446
Q ss_pred EccCCCCeeEEEEeCC
Q 004737 700 LSAHDKLVSSLAASTV 715 (732)
Q Consensus 700 ~~~h~~~V~sla~spd 715 (732)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.9e-15 Score=148.28 Aligned_cols=229 Identities=19% Similarity=0.206 Sum_probs=169.7
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCC---------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s---------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD 564 (732)
.|..-+|+|.+++|++|..+|.|.+..+.+ ++..+..+.+|+++|+.++|+ +.+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 356668999999999999999999998763 234456678999999999999 34555777 69999998
Q ss_pred CCCCee----ee--EEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737 565 INNGSC----AG--VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 565 l~t~~~----i~--~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd 630 (732)
.+.... .. ... .-..|+++-..|..+.++.++.|+.++.||+++++..+++++|...|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 754322 11 111 1124788999999999999999999999999999999999999999999998555
Q ss_pred CCEEEEEe-CCeEEEEECCCCCCceeEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 004737 631 GEYLASVS-DELVRVWSIGSGSKGECIHELSC-------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 702 (732)
Q Consensus 631 g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~ 702 (732)
..-|++|+ ||+++|||.++.+....+..++. .+..|-+++. +..++++| ....+.+|+++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCCceeEEeccCCCceEEEe
Confidence 55566677 99999999999854333333221 1233444444 44445544 45579999999999887777
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 703 HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 703 h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
..+.|..+.|.. +.+++++....|.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 888899999863 456677765555544
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.2e-16 Score=172.57 Aligned_cols=234 Identities=20% Similarity=0.212 Sum_probs=173.5
Q ss_pred Cceeeeeec-----CCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----------CeEEEEecc
Q 004737 426 DRVGRSAEV-----GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEE 490 (732)
Q Consensus 426 d~~~r~wd~-----~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~ 490 (732)
+.++.+|.. .....+.++.+|++|.++|.|+++.+++..+++|+.||+|+.|++.. ......+.+
T Consensus 315 d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G 394 (577)
T KOG0642|consen 315 DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG 394 (577)
T ss_pred ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence 444455554 33567788999999999999999999999999999999999996541 123356789
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
|.+.|+.++++.....|++++.||+|++|+......+........+...+++|-.....+.++...-+.--+++++....
T Consensus 395 htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~ 474 (577)
T KOG0642|consen 395 HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD 474 (577)
T ss_pred cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence 99999999999998999999999999999988655311111222233456666543322332322233333344444433
Q ss_pred eeEEecc--------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCe
Q 004737 571 AGVFKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL 641 (732)
Q Consensus 571 i~~~~~~--------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~ 641 (732)
+..+... ..+..+.+.|.....+++..|+.|+++|..+++.+.....|...++++++.|+|-+|++++ |+.
T Consensus 475 ~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 475 LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce
Confidence 3333311 2366788899999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEECCCCCCceeEEEeecC
Q 004737 642 VRVWSIGSGSKGECIHELSCT 662 (732)
Q Consensus 642 I~IWDl~t~~~~~~i~~~~~~ 662 (732)
+++|.+... .|+.+...|
T Consensus 555 v~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 555 VRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred eehhhccch---heeeccccc
Confidence 999998765 555554433
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.7e-16 Score=172.28 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=167.6
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeE--EEEeccCCCceEEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVR 499 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~--~~~l~~h~~~V~~l~ 499 (732)
.+..+.+||.+... ...+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++
T Consensus 182 ~~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~ 254 (429)
T PRK01742 182 QPYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPA 254 (429)
T ss_pred ceEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCcee
Confidence 34667777765432 34567788899999999999999887654 3699999988754 3333333 44689
Q ss_pred EcCCCCeEEEEe-CCCeEEEE--ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe
Q 004737 500 FSPSLSRLATSS-ADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK 575 (732)
Q Consensus 500 fspdg~~Lasgs-~Dg~I~IW--Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~ 575 (732)
|+|||+.|++++ .+|.+.|| |+.++. ...+..+...+..+.|+|+|..+++++..++...||++... .....+.
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG 332 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec
Confidence 999999888765 68876665 555443 45566677788999999999888878777888888876432 2222232
Q ss_pred ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737 576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 654 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~ 654 (732)
. .. ....|+|+++++++++.++ +.+||+.+++.......+ ...++.|+|+|++|+.++ ++.+.+|++.+. ...
T Consensus 333 ~-~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~ 406 (429)
T PRK01742 333 G-RG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGR 406 (429)
T ss_pred C-CC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence 2 22 4578999999998887754 666999988655332222 345788999999999988 887777775321 115
Q ss_pred eEEEeecCCCceEEEEEeCC
Q 004737 655 CIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspd 674 (732)
.+..+..+.+.+...+|+|-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 66677777778888999885
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=9.2e-15 Score=143.50 Aligned_cols=268 Identities=15% Similarity=0.182 Sum_probs=191.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCC----------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
.|.+-+|+|.+++|+.|..+|.|.|+.+.+ ...+....+|.++|+.++|.. .+|++| .||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~-gdG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSG-GDGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeec-cCceEEEeee
Confidence 477789999999999999999999998753 234455689999999999983 466666 4699999987
Q ss_pred CCCCcee-------EEeecCC-----cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCC
Q 004737 522 ENPDYSL-------RTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 588 (732)
Q Consensus 522 ~s~~~~~-------~~l~~h~-----~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~ 588 (732)
....... ....-|. -.|+++-..|..+.++.+| .|+.++.||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432210 0111122 4688999999877777555 599999999999999999997655 777777667
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----------CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE
Q 004737 589 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~----------~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~ 658 (732)
...+++|+.||++++||.++++++..+...+ .+|-+++ -+..++++|....+.+|.++.. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence 7889999999999999999999988775422 2455555 4566888887889999999987 34433
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEe
Q 004737 659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 731 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IW 731 (732)
+. -..++..+.|..+ .+++++....|.-|.+..--...........++..|+..- ++|-.++..+.+.|+
T Consensus 243 fp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Ee-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33 2456777888655 4777777778888877543333333333334455554332 455556667777765
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=8.4e-16 Score=164.44 Aligned_cols=262 Identities=16% Similarity=0.236 Sum_probs=189.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE-cC-------CCCeEEEEeCCCeEEEE
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 519 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f-sp-------dg~~Lasgs~Dg~I~IW 519 (732)
.|...|.||.|+.....+.+++ |..+.+|..-+.+....+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4667788999998876666665 555555543332322222212222211111 11 23578889999999998
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
+-.. ...+....|.+.|.+-.|+|+|.-++ +++.||.|++|.-...-..........|.|++|.|+.+.++.+. .+
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 7553 24567889999999999999987777 88889999999865322222223456799999999988776554 46
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
.+.|=.+.....+..++.|.+-|.++.|++...+|++|+ |-..+|||-.. ..+..-..|+.+|++++|.|+ + +
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~-~ 240 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K-D 240 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-c
Confidence 677777777777788999999999999999999999999 88999999654 566667788999999999999 4 3
Q ss_pred EEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 679 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+..++..++++ .....+.|..++||+||..++.|+..|.|.+
T Consensus 241 ~~v~S~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSYNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 33333444542 1244578999999999999999999887653
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.7e-15 Score=165.25 Aligned_cols=250 Identities=16% Similarity=0.191 Sum_probs=189.5
Q ss_pred eeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE
Q 004737 429 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 508 (732)
Q Consensus 429 ~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La 508 (732)
+-++|...|. .+.++++|++.|+|++|+.||+.+|+|+.|+.|.||+..- +-+.. ..|++.|.|+.|+|-...|+
T Consensus 35 lliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 35 LLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred EEEEeCCCcc---cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee-eccCCeeeEeecCchHHHhh
Confidence 4456777774 4677999999999999999999999999999999998543 22222 25999999999999989999
Q ss_pred EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEE
Q 004737 509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 585 (732)
Q Consensus 509 sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~ 585 (732)
+++-. ..-+|..+.... ...+ ....|.+++|..|| .+++.|-.+|+|.+-+-...+.+..-+ ..++|.+++|
T Consensus 110 sCsLs-dFglWS~~qK~V--~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 110 SCSLS-DFGLWSPEQKSV--SKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred hcchh-hccccChhhhhH--Hhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEe
Confidence 98754 477898775432 2222 34578899999997 566688889999998765444333333 3456999999
Q ss_pred eCCC-----CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737 586 QPRL-----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 586 sp~g-----~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
+|.. ..+++.....++.+|.+.. +.+..-+.-.-...|+.+.++|+|++.|+ |+.+++|.-+. ..+.++
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTv 259 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTV 259 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeec
Confidence 9964 3566777777777777653 22222222333557899999999999888 99999997443 556666
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
.....+|+.+...|++.+++.|+.||+|..|++.
T Consensus 260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 6678899999999999999999999999999874
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=6.1e-14 Score=145.29 Aligned_cols=233 Identities=17% Similarity=0.249 Sum_probs=174.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC--CeEEEEecCCCCce
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYS 527 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~s~~~~ 527 (732)
...|..+.|..|...|..|+.|| .++|+.+..............|...-|+. .++|..+.+ +.+++++++....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 34577888999999999999887 57888776554332222334455566654 466666554 4589999986553
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----CCeeEEEEeCCCCEEEEEEc--CCeE
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAAI--ENYI 601 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----~~i~~v~~sp~g~~ll~~s~--dg~I 601 (732)
+..+. ...+|.++.++.+ +++ ++=. ..|+|||+++.+.+.++... .++..+.+++.+.+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33333 3467999999854 344 4443 34999999999999888743 23555555555567776433 6899
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 677 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~~ 677 (732)
.+||+.+-+.+..+..|++.+-+++|+++|.+|++++ .| .||||.+.++ ..+.+++-. ...|.+++|+|++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 55 7999999988 555555422 356899999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 004737 678 LLVIGCYETLELWNMTE 694 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t 694 (732)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998754
No 195
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.5e-14 Score=160.72 Aligned_cols=235 Identities=13% Similarity=0.106 Sum_probs=171.4
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|.+||+.++.. +.+....+.+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 37889998765443 34456678999999999999987653 45799999987652 33333334456789999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737 549 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 549 ~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~ 623 (732)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766565 5999999988776655555567889999999999887764 3 5666677776543 3333444566
Q ss_pred EEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737 624 SVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 696 (732)
Q Consensus 624 sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~ 696 (732)
+.+|+|||++|+..+ ++ .|.+||+.++.. . .+.. ........|+|||++|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999998766 32 688999987632 1 2221 12234678999999999999876 47888887776
Q ss_pred EEEEccCCCCeeEEEEeCC
Q 004737 697 TLTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 697 ~~~~~~h~~~V~sla~spd 715 (732)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 6777788889999999873
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=146.00 Aligned_cols=271 Identities=15% Similarity=0.201 Sum_probs=200.1
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCcee
Q 004737 451 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasg-s~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
+.|.-+.|..|..+++++ ..|+.|.+|++...+-...+......+..++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 567788888887776554 5678999999998888888888889999999999995 55677789999999999865322
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeC-----------------------------------CCcEEEEECCCCeeeeE
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 573 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~-----------------------------------Dg~I~iWDl~t~~~i~~ 573 (732)
+.-....+..++|+|+|....+..-. +..+.+||---.-.+..
T Consensus 129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 22223446888888887544332211 23455565433333344
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE----------------------------------------
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---------------------------------------- 613 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~---------------------------------------- 613 (732)
+...-++..++|+|.+.++++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 4555678999999999999999999988876532211100
Q ss_pred --------------------EEc------CCCCCEEEEEEeCCCCEEEEEeCC---eEEEEECCCCCCceeEEEeecCCC
Q 004737 614 --------------------KLQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 664 (732)
Q Consensus 614 --------------------~l~------~h~~~V~sla~spdg~~LasgsDg---~I~IWDl~t~~~~~~i~~~~~~~~ 664 (732)
.++ ...-.+--++|++|..|+++-.|. .+-+||+... .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 000 011235568999999999998755 7999999874 3333334567
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737 665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 727 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~ 727 (732)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999888777766666678999999999999999998864
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=8.7e-15 Score=146.95 Aligned_cols=247 Identities=19% Similarity=0.241 Sum_probs=183.2
Q ss_pred eEEEEeccCCCceEEEEEcC---CCCeEEEEeC----CCeEEEEecCCCCcee--EEeecCCcceEEEEEcCCC----Cc
Q 004737 483 TVKSTLEEHTQWITDVRFSP---SLSRLATSSA----DRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK----ED 549 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~----Dg~I~IWDl~s~~~~~--~~l~~h~~~V~sl~fspdg----~~ 549 (732)
+.+..+..+ -.+.++.|+. ...+||.|+. .+.|.|..++...... ..-..|.-+++.+-|.|+. ..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 334444433 4578888873 2457888875 4567776655333222 2334789999999999985 35
Q ss_pred EEEEEeCCCcEEEEECCCCeee----eEE------eccCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCe---EEEEE
Q 004737 550 LLCSCDNNSEIRYWSINNGSCA----GVF------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQV---CRLKL 615 (732)
Q Consensus 550 llaSgs~Dg~I~iWDl~t~~~i----~~~------~~~~~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~---~i~~l 615 (732)
+||+++ -.+|+|.+...+.. ..+ ....+++++.|+.- -++|.+.+-|-+..|||++++. ....+
T Consensus 115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 776664 47999998742211 111 12356888888763 4567778889999999999863 45667
Q ss_pred cCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC-eEEEEE
Q 004737 616 QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE-TLELWN 691 (732)
Q Consensus 616 ~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg-~I~IwD 691 (732)
..|..+|..|+|...+. .|++++ ||.||+||++..+....+.+-.....+...++|++.. +++++...|. .|.|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 78999999999998654 666666 9999999999987777777766667889999999865 5666666665 799999
Q ss_pred CCCCeEE--EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737 692 MTENKTL--TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 732 (732)
Q Consensus 692 l~t~~~~--~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD 732 (732)
++..... ++..|.+.|++++|.|.. ..|+||++|..+.|||
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 9876543 888999999999999975 5899999999999997
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=3.4e-16 Score=165.41 Aligned_cols=262 Identities=16% Similarity=0.261 Sum_probs=211.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 532 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~ 532 (732)
-+.+.++.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++ ....+.|||-.. ..+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G--tElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG--TELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC--cEEeehh
Confidence 46789999999999999999999999999999888853 4569999999988888887 567899999764 2466666
Q ss_pred cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVC 611 (732)
Q Consensus 533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~ 611 (732)
.|. .|..+.|.|. .++|++++..|.++.-|+.+|+.+..+... +.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 208 ~~~-~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RHI-RVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hcC-chhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 554 6899999998 688999999999999999999999877653 5577788899888888999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
+..+..|.++|.+|++.++|.|+++.+ |..++|||++.. ..++++.. ..+...++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 999999999999999999999999999 999999999987 34444443 4566778888777 5666666689999
Q ss_pred E-CCCCe---EEEEccC--CCCeeEEEEeCCCCEEEEEECCC
Q 004737 691 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 691 D-l~t~~---~~~~~~h--~~~V~sla~spdg~~LaSgs~DG 726 (732)
. .-.+. ...+..| .+.|..+.|+|-..+|-.|..-|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122233 45899999999777666665544
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=2.3e-13 Score=149.34 Aligned_cols=297 Identities=16% Similarity=0.158 Sum_probs=191.8
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 506 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~ 506 (732)
..+.+.|..+... +..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||++
T Consensus 16 ~~v~viD~~t~~~---~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 16 GSVAVIDGATNKV---VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKY 91 (369)
T ss_dssp TEEEEEETTT-SE---EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTE
T ss_pred CEEEEEECCCCeE---EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCE
Confidence 4556666655544 44454443333457899999999999999999999999999999997654 4688999999999
Q ss_pred EEEEe-CCCeEEEEecCCCCceeEEeec-------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEec
Q 004737 507 LATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKC 576 (732)
Q Consensus 507 Lasgs-~Dg~I~IWDl~s~~~~~~~l~~-------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i--~~~~~ 576 (732)
+++++ .++.+.|+|.++.+. ++.+.. ....+..|..+|....++++--+.+.|.+.|....+.+ ..+..
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 98776 589999999998663 444432 23457788888887667766666688988898765433 44555
Q ss_pred cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEE-------EeC--CCCEE-EEEeCCe
Q 004737 577 QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WNT--SGEYL-ASVSDEL 641 (732)
Q Consensus 577 ~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~----h~~~V~sla-------~sp--dg~~L-asgsDg~ 641 (732)
........|+|++++++++.. ++.|.++|.++++.+..+.. |..++..+- |.. .+... ...+.+.
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence 566888999999999877654 67999999999987776542 444444331 221 22222 2223445
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE----EcCCeEEEEECCCCeEEEEcc--CCCCeeEEEEeCC
Q 004737 642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI----GCYETLELWNMTENKTLTLSA--HDKLVSSLAASTV 715 (732)
Q Consensus 642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg----s~dg~I~IwDl~t~~~~~~~~--h~~~V~sla~spd 715 (732)
+.+||..+. +.+..+...+.. ..+..+|+++++++. ...+.|.++|.++.+...... ....+..+.|+++
T Consensus 251 v~v~d~~~w---kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 251 VSVHDDYAW---KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD 326 (369)
T ss_dssp TT-STTTBT---SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred cccchhhcC---eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence 666777666 778888877777 788889999999998 334699999999998763332 2335999999999
Q ss_pred CCEEEEEECC--CeEEEeC
Q 004737 716 NGMVASASHD--KCVKIWK 732 (732)
Q Consensus 716 g~~LaSgs~D--G~I~IWD 732 (732)
|+.+..+..| +.|.|||
T Consensus 327 G~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp SSEEEEEEE--TTEEEEEE
T ss_pred CCEEEEEEecCCCEEEEEE
Confidence 9976665543 3698886
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.3e-14 Score=145.68 Aligned_cols=277 Identities=15% Similarity=0.231 Sum_probs=191.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCc-
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY- 526 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~- 526 (732)
+-.+..++|++.-..+|++..|-.|+|||-.. +....++ .-...|+|++|-|. ++.|+.|+.. -|.||..+....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34577899999766789999999999999776 4444443 23467999999995 4567777765 499998763221
Q ss_pred ------------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEE
Q 004737 527 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL 593 (732)
Q Consensus 527 ------------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll 593 (732)
.+....+| .+|+++.|.+||..++-++-.|..|.|||..++.++... ...+++.-+.|+|++.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 12233455 689999999998777655557889999999999887766 4567789999999999999
Q ss_pred EEEcCCeEEEEEC-CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCce------------eEEEee
Q 004737 594 AAAIENYISILDV-ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS 660 (732)
Q Consensus 594 ~~s~dg~I~IwDl-~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~------------~i~~~~ 660 (732)
+++.|+..++|.. ++..+..-.. ..+.|...+|+|+|++|+....+.-++|.+....... .+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999954 4444433333 3458999999999999888886666666654321100 111111
Q ss_pred -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCeEEEEc--c--CCCCeeEEEEeC---CC
Q 004737 661 -----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VN 716 (732)
Q Consensus 661 -----~----~~~~I~sl~fspdg~~L~sgs~dg--------~I~IwDl~t~~~~~~~--~--h~~~V~sla~sp---dg 716 (732)
. ..+.+.+++|.|.|.++++.-..+ .|.+||....-.+.+. + .......|+|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146789999999999999987655 3667777665444222 1 111244555554 34
Q ss_pred CEEEEEECCCeEEE
Q 004737 717 GMVASASHDKCVKI 730 (732)
Q Consensus 717 ~~LaSgs~DG~I~I 730 (732)
.+|..+=.-|.|.-
T Consensus 414 ~lLsiaWsTGriq~ 427 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQR 427 (445)
T ss_pred cEEEEEeccCceEe
Confidence 45554445555543
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=154.96 Aligned_cols=277 Identities=14% Similarity=0.166 Sum_probs=204.8
Q ss_pred CCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737 448 ASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 526 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~ 526 (732)
.|...-+.|..+|||+|+ |+|.+.-.|+|||+....+...-.-....|.-.-++.|-..++.-..|.+|.+..-....+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 467778899999999985 6777888999999987666544333345566666677766677777788887654332111
Q ss_pred eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 605 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwD 605 (732)
..+ -...-..++++.-...+++.|+ ...|+-++++.|..+..+... +.+.++.+++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 1123345666554455664444 667999999999999988876 6799999999999999999999999999
Q ss_pred CCCCeEEEEEc------CCCC-----CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737 606 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 673 (732)
Q Consensus 606 l~t~~~i~~l~------~h~~-----~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp 673 (732)
.++...+..+. .|.+ .|+++.|+.+|-.+++|. +|.|.|||+++.. ..+..-.....+|..+.|-+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 99876555443 2333 499999999999999998 9999999999874 22333334567788999977
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 674 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 674 dg~~-L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.+.- .++......++|||-.+|+.+........++.+|+-|++.+++++-.++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6432 333334448999999999999777777779999999999999999888766543
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.1e-14 Score=166.08 Aligned_cols=269 Identities=15% Similarity=0.190 Sum_probs=193.9
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcC-----CCeEEEEecc-------C
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------H 491 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~-------h 491 (732)
...+++|++.++..+..+..-......|+.+.+-. |..++++|+.||.|+||+-. +.+.+..+.+ .
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 34679999999987766555555567899999976 55689999999999999632 2344443322 1
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-- 569 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-- 569 (732)
.+.=.-+.|.-...+|++++.-..|+|||.+...+......+....|+++.-+-....++++|..||.|++||.+...
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 111134567666666777777889999999986654445555667788887766667889899999999999987643
Q ss_pred -eeeEEec-c--CCeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEEEcCCC--C-CEEEEEEeCCCCEEEEEeC
Q 004737 570 -CAGVFKC-Q--SGATQMRFQPRLG-RILAAAIENYISILDVETQVC--RLKLQGHK--N-QVHSVCWNTSGEYLASVSD 639 (732)
Q Consensus 570 -~i~~~~~-~--~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~--~-~V~sla~spdg~~LasgsD 639 (732)
.+...+. . .+|..+.+.+.|- .+++++.+|.|++||++.... ...+..|. + .++++..+++..++++|+.
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 2333332 2 2388888888654 599999999999999998422 12222232 3 5999999999999999999
Q ss_pred CeEEEEECCCCCCceeEEE----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 640 ELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~----~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+.|+||++..... ..++. +....+.+.|++|+|..-.+++|..|..|.||.....
T Consensus 1325 q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 9999999876432 11111 1122356799999999999999999999999987654
No 203
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.7e-14 Score=158.90 Aligned_cols=234 Identities=16% Similarity=0.093 Sum_probs=168.4
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
..|.+||.... ....+..+...+.+++|+||++.|+.++.+ ..|.+||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46899998644 444565677789999999999999988743 4699999987653 33344455566889999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737 549 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 549 ~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~V~ 623 (732)
.++++.+.++ .|++||+.+++..............+|+|++.++++++. +| .|+++|+.+++... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887776666 599999998876554433334567899999999888775 34 47778887765433 222334455
Q ss_pred EEEEeCCCCEEEEEe-C-C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737 624 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 696 (732)
Q Consensus 624 sla~spdg~~Lasgs-D-g--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~ 696 (732)
.++|+|||++|+..+ + + .|.+||+.++.. . .+. +........|+|+|++++..+.++ .|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 3 2 699999977632 1 222 222345679999999988877643 78899997766
Q ss_pred EEEEccCCCCeeEEEEeC
Q 004737 697 TLTLSAHDKLVSSLAAST 714 (732)
Q Consensus 697 ~~~~~~h~~~V~sla~sp 714 (732)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 556666677788888886
No 204
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1e-13 Score=156.25 Aligned_cols=234 Identities=13% Similarity=0.158 Sum_probs=170.1
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
..|.+||.+. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. +.+..+.+.+....|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788889754 444556678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737 549 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 549 ~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~ 623 (732)
.++++.+.++. |++||+.+++...............|+|++..++.++.. | .|++||+..+.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 888899887765544444446678999999998887753 3 68889988765443 333455677
Q ss_pred EEEEeCCCCEEEEEe-C-C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 004737 624 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 693 (732)
Q Consensus 624 sla~spdg~~Lasgs-D-g--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d------g~I~IwDl~ 693 (732)
...|+|||++|+... + + .|.+||+..+. ...+. ....+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 2 68888876542 12222 22346778999999998876653 268888988
Q ss_pred CCeEEEEccCCCCeeEEEEeCC
Q 004737 694 ENKTLTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 694 t~~~~~~~~h~~~V~sla~spd 715 (732)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665444 3455777788763
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=8.9e-14 Score=144.06 Aligned_cols=230 Identities=13% Similarity=0.182 Sum_probs=178.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCe
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 569 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g~I~iWDl~t~~ 569 (732)
...+..+.|+.+...|..|+.|| .++|+.+....... .......|.-+-|+. .+++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCc
Confidence 34577778999999999999998 67887775443111 111223455666763 355544433 359999999999
Q ss_pred eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEeCCCCEEEEEe---CCeEE
Q 004737 570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 643 (732)
Q Consensus 570 ~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~V~sla~spdg~~Lasgs---Dg~I~ 643 (732)
.+..+.....|.++.++.+ +++++-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.|++.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999888899999999864 55555544 499999999998887764 344566666666677988754 67999
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccC--CCCeeEEEEeCCCCEE
Q 004737 644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 719 (732)
Q Consensus 644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~-~~~~h--~~~V~sla~spdg~~L 719 (732)
+||..+. ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.++..+ .+... ...|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 77888889999999999999999999999999 5899999999887 44422 4568999999999999
Q ss_pred EEEECCCeEEEeC
Q 004737 720 ASASHDKCVKIWK 732 (732)
Q Consensus 720 aSgs~DG~I~IWD 732 (732)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.9e-14 Score=158.41 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=196.2
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC---CeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 454 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 454 ~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+. .+++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEEE
Confidence 3457899999988776 4699999999999999999999999999998854 477899999999999999866 3555
Q ss_pred eecCCcceEEEEEcCC---CCcEEEEEeCCC------------cEEEEECCCCee--eeEEeccCCeeEEEEeCCCCEEE
Q 004737 531 FTGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRIL 593 (732)
Q Consensus 531 l~~h~~~V~sl~fspd---g~~llaSgs~Dg------------~I~iWDl~t~~~--i~~~~~~~~i~~v~~sp~g~~ll 593 (732)
+..+ .++..+.+.|. ....+..+..|. .++-+.+.+... ....+......++.+++. ..+.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEE
Confidence 5433 23444443221 011111111111 111112111100 000011111345666665 4555
Q ss_pred EEEcCCeEEEEECCCCeEEEE----EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC-CCCceeEEEeecCCCceE
Q 004737 594 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH 667 (732)
Q Consensus 594 ~~s~dg~I~IwDl~t~~~i~~----l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t-~~~~~~i~~~~~~~~~I~ 667 (732)
....+..+.+|+..+...... -..|...+++.+++|++++++++. ||.|.+|.--. .........+.-|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 666677888998887542111 123666789999999999999999 99999996443 222345566778999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
+++|+++|.+|++|+.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999966777788999999999999999999999988763
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-15 Score=157.57 Aligned_cols=195 Identities=23% Similarity=0.247 Sum_probs=154.5
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-e
Q 004737 454 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-T 532 (732)
Q Consensus 454 ~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~ 532 (732)
.+++|+.||..|++|+.||++|||+......+.....|...|.++.|+|||+.|++.+.| ..+||++.++....+.. .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999998888888888899999999999999999999999 99999999885322222 2
Q ss_pred cCCcceEEEEEcCCC---C-cEEEEEeCCCcEEEEECCCCee------eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 533 GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 533 ~h~~~V~sl~fspdg---~-~llaSgs~Dg~I~iWDl~t~~~------i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.-+.....+.|..++ . .+++.....+.|+.||+....- ...+.....+++++++.+|++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 233456677777664 2 2333334556677777643221 22223456799999999999999999999999
Q ss_pred EEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737 603 ILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 603 IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t 649 (732)
||+..+.+.+...+ .|...|+.+.|+||.+++++.+ |..+.|..+.-
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999987776554 5999999999999999999977 87888877654
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=3.2e-14 Score=144.84 Aligned_cols=226 Identities=15% Similarity=0.194 Sum_probs=171.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
+.--..+|+|.+|++|+..+|++-....|.||..... +..+++..|...|++|+|+|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3444578999999999999999999999999987654 5778899999999999999999999999999999999984
Q ss_pred CCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---E--eccCCeeEEEEeCCCCEEEEE
Q 004737 523 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---F--KCQSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 523 s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~---~--~~~~~i~~v~~sp~g~~ll~~ 595 (732)
.+. .+...+..++..++++.|+|.+ +.|++|+....|.||=++...-=.+ + .....|.++.|+|++-.+++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 332 2334566789999999999995 6777888888888887764332211 1 133668999999999999999
Q ss_pred EcCCeEEEEECC-----C-------------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004737 596 AIENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 656 (732)
Q Consensus 596 s~dg~I~IwDl~-----t-------------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i 656 (732)
+.|+..+||..- . +..+.++....+.|..+.|+|+|..|+-.+ |..+.+-|...... .+
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v 242 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RV 242 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hc
Confidence 999999988642 1 122233334567899999999999999888 99999999876531 22
Q ss_pred EEeecCCCceEEEEEeCC
Q 004737 657 HELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 657 ~~~~~~~~~I~sl~fspd 674 (732)
.......-+..++.|-.+
T Consensus 243 ~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISE 260 (361)
T ss_pred cchhhccCCceeeEeecC
Confidence 222223355556655443
No 209
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=8.1e-15 Score=147.03 Aligned_cols=208 Identities=21% Similarity=0.371 Sum_probs=162.3
Q ss_pred eEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE-EEEe-----ccCCCceEEEEEcC--CCCeEEEE
Q 004737 440 FTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLATS 510 (732)
Q Consensus 440 ~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~-~~~l-----~~h~~~V~~l~fsp--dg~~Lasg 510 (732)
+..+..+. .|-+.|.|+.|.|++..|++-. |..|.+|++..... +..+ .+|....++-+|+| +++.+++.
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 45555565 5667999999999999998876 88999999987665 3333 23566788889998 67788776
Q ss_pred eCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCC-eeEEEEeCC
Q 004737 511 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG-ATQMRFQPR 588 (732)
Q Consensus 511 s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~-i~~v~~sp~ 588 (732)
.|+++..||+++..+...+-..|...|..++|+|+...+|++|++||.|+|||.+.- ..+..+..+.. +.++.|+|.
T Consensus 191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred -CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence 589999999998877666777898999999999999999999999999999999864 45555554444 899999996
Q ss_pred CC-EEEEEEcCCeEEEEECCCC-----------------------------eEEEEEcCCCCCEEEEEEeCCCCEEE-EE
Q 004737 589 LG-RILAAAIENYISILDVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLA-SV 637 (732)
Q Consensus 589 g~-~ll~~s~dg~I~IwDl~t~-----------------------------~~i~~l~~h~~~V~sla~spdg~~La-sg 637 (732)
.. .+++++.|..|.+|....- ..+.++..|+..|++++|+.-..+++ +-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 54 5678888999999854211 11335667999999999998766555 44
Q ss_pred e-CCeEEEEECCC
Q 004737 638 S-DELVRVWSIGS 649 (732)
Q Consensus 638 s-Dg~I~IWDl~t 649 (732)
+ ||.+.|=.+..
T Consensus 350 SYDGRviIs~V~r 362 (370)
T KOG1007|consen 350 SYDGRVIISSVPR 362 (370)
T ss_pred ccCceEEeecCCh
Confidence 5 99988876643
No 210
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.8e-14 Score=146.78 Aligned_cols=244 Identities=16% Similarity=0.227 Sum_probs=186.4
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-----ceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----YSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-----~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
.+.+|.+.|.+|.|+.++.+|++|+.|..++||+++..- +++... ..|...|.|++|... +.++++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCccee
Confidence 456899999999999999999999999999999986311 123222 345689999999876 5777899999999
Q ss_pred EEEECCCCeeeeEEeccC---CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCC-E
Q 004737 561 RYWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGE-Y 633 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~~~---~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~-~ 633 (732)
..-|+++.+.+.++.+.. .|..+..+|-.+.+++.+.++.|.+||.+... ....+.........+.|+|... +
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999999888765 69999999999999999999999999998653 1222333556788899999754 5
Q ss_pred EEEEe-CCeEEEEECCCCCCcee----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCC---
Q 004737 634 LASVS-DELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHD--- 704 (732)
Q Consensus 634 Lasgs-Dg~I~IWDl~t~~~~~~----i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~--- 704 (732)
|++.+ .+-+.+||++....... ...+.........+.|+|.|..+++.-....-.+||+.+.++..+. .|.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 56666 67899999987543111 1122222334467899999998888877777788999887666443 333
Q ss_pred ----CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 705 ----KLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 705 ----~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..|.+++|..|. .+++|+.+=.|+||+
T Consensus 290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred ceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 246778886554 499999999999995
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=169.81 Aligned_cols=278 Identities=18% Similarity=0.203 Sum_probs=208.3
Q ss_pred ccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 004737 397 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 476 (732)
Q Consensus 397 l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V 476 (732)
+.+|...+.|.-+|.+....+ ....|+.+++|...++. .....+||.+.|+.++.+.+..++|+++.|..|+|
T Consensus 186 LlgH~naVyca~fDrtg~~Ii----tgsdd~lvKiwS~et~~---~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYII----TGSDDRLVKIWSMETAR---CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHhhhhheeeeeeccccceEe----ecCccceeeeeeccchh---hhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 355666677777776655544 45667889999977775 45678999999999999999999999999999999
Q ss_pred EEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee------cCCcceEEEEEcCCCCcE
Q 004737 477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL 550 (732)
Q Consensus 477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~------~h~~~V~sl~fspdg~~l 550 (732)
|.+.++..+..+.+|++.|++|+|+|-. +.+.||++++||.+- ....+. .....+.++.|...+..+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~---~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL---EPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc---cccccCCCCCCcccccceeeeecccccccc
Confidence 9999999999999999999999999953 678899999999881 111111 122456666776665444
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 551 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 551 laSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
.+++.|++-..|.+..-.+.. ..+.-+.++.+. .+.+++-.+-.+.+|++.++.....+.+|...+..+.++|
T Consensus 332 -~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 332 -LTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred -ccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 499999998888765322110 011111111121 3455666678899999999999999999999999999999
Q ss_pred CCCEEE-EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 630 SGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 697 (732)
Q Consensus 630 dg~~La-sgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~ 697 (732)
-+..++ +++ ||.+.|||+-.+. .++.+......+....|+++|..++....-|.++|.....++.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 766554 444 9999999998874 3333333467788899999999999998889999998765543
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.4e-13 Score=152.82 Aligned_cols=235 Identities=14% Similarity=0.061 Sum_probs=159.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+.+..|+|||.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44445555677889999999999999887753 3699999987653 33333445667899999998
Q ss_pred cEEEEEeCCCcEEEE--ECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEE--EECCCCeEEEEEcCCCCCEE
Q 004737 549 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISI--LDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 549 ~llaSgs~Dg~I~iW--Dl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~I--wDl~t~~~i~~l~~h~~~V~ 623 (732)
.++++.+.++...+| |+..+................|+|+|.+++.++. ++...| +|+.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888888878875555 5554443332222334567889999999887665 344444 455555433222 2233445
Q ss_pred EEEEeCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737 624 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 696 (732)
Q Consensus 624 sla~spdg~~Lasgs-Dg---~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~ 696 (732)
..+|+|||++|+..+ ++ .|.+||+.++.. ..+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 688999999998776 33 699999987632 12221 22346779999999998888665 57777775444
Q ss_pred EEEEccCCCCeeEEEEeCC
Q 004737 697 TLTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 697 ~~~~~~h~~~V~sla~spd 715 (732)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456567778888899874
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=4.1e-14 Score=152.08 Aligned_cols=245 Identities=15% Similarity=0.193 Sum_probs=166.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE----EEeccCCCceEEEEEc-----CCCCeEEEEeCCCeEEEEecC
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFS-----PSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~fs-----pdg~~Lasgs~Dg~I~IWDl~ 522 (732)
.++...++-.|++|+..-. ..++||+...+..+ ....-.....+|-+|. +++--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3455555666777665432 46888887643221 1111112234455552 345567888888889998876
Q ss_pred CCCceeEEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737 523 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 523 s~~~~~~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
.... .+.+ .-....|+|+.|-|.++.++..+-.+|.+++||.+- .......+....+++..+.+....
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5221 1111 112478999999999889998999999999999721 111111222223344444433221
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
+. .+..++..+.-..+.|+.++|+|||++|++.+ ||.+||||+.+. +.+..++..-+...|++|+|||+|
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11134444444566899999999999999999 999999999886 455555556678999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeC
Q 004737 678 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 714 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~sp 714 (732)
|++|++|+-|.||.+.+.+++ .-.+|+.+|+.++|.|
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999 6679999999999983
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.3e-13 Score=153.21 Aligned_cols=234 Identities=18% Similarity=0.165 Sum_probs=161.8
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
..+.+||...+ ..+.+..|...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.+...+++|+||
T Consensus 184 ~~l~i~D~~g~----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGY----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCC----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence 34566665433 234456677889999999999999987743 469999998876543 3334455668899999
Q ss_pred CCeEE-EEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEeccC
Q 004737 504 LSRLA-TSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 504 g~~La-sgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~ 578 (732)
|+.|+ +.+.+| .|++||+.++. ...+..+......++|+|++..++++...+|. |+++|+.+++.........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 99776 445555 59999998765 34555565566789999999888877766665 7777877766544332223
Q ss_pred CeeEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-C--eEEEEECCCCC
Q 004737 579 GATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGS 651 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg---~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-g--~I~IWDl~t~~ 651 (732)
.....+|+|++++++..+.++ .|.+||+.++... .+. +........|+|||++|+..+ + + .|.++++...
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~- 413 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR- 413 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 345689999999998876543 6999999887655 333 333455779999999888766 2 2 6888887543
Q ss_pred CceeEEEeecCCCceEEEEEeC
Q 004737 652 KGECIHELSCTGNKFHSCVFHP 673 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fsp 673 (732)
....+..+.+.+...+|+|
T Consensus 414 ---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 ---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---ceEEcccCCCCCCCCccCC
Confidence 2333333445566667765
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=2.1e-12 Score=131.67 Aligned_cols=233 Identities=15% Similarity=0.229 Sum_probs=162.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CC------CeEEEEecCCC
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-AD------RTVRVWDTENP 524 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D------g~I~IWDl~s~ 524 (732)
....++|+.|...+++|..+ -.+||+++..+.......+.+.+.-+..---.++|+..+ .+ ..|.|||=. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 34559999999888888755 589999987655433332322222222212334555443 32 479999943 3
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEecc---CCeeEEEEeCCCCEEEEEE-cCC
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQ---SGATQMRFQPRLGRILAAA-IEN 599 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s-~dg 599 (732)
+.++..+. ...+|.++.+.++ .+++.- ++.|+||... +-+.++.+... .+..+++-......|+.-+ .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 33455544 5689999999976 344333 7789999987 55666666533 3333333333333344333 358
Q ss_pred eEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeec--CCCceEEEEEeC
Q 004737 600 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 673 (732)
Q Consensus 600 ~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fsp 673 (732)
.|.|.|+...+. ...+..|...|.|++.+-+|..+++++ .| .|||||..++ ..+.+++- ....|++++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987655 467888999999999999999999999 66 6999999998 55555542 346799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 004737 674 TFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t 694 (732)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998865
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.6e-13 Score=150.49 Aligned_cols=235 Identities=17% Similarity=0.136 Sum_probs=160.3
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
..+.+||.+.+. .+.+..+...+.+.+|||||+.|+..+. +..|++|++.+++.... ....+.+..++|+||
T Consensus 179 ~~l~~~d~dg~~----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCC----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCC
Confidence 345555544332 2334456778999999999999887642 45799999988764432 223334557899999
Q ss_pred CCeEEEE-eCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEeccC
Q 004737 504 LSRLATS-SADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 504 g~~Lasg-s~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~ 578 (732)
|+.|+.. +.+| .|.+||+.++. ...+..+...+....|+|+++.++++...++. |+++|+.+++.........
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 9988865 4444 58899998765 34444455678899999999888877765554 5555777665543333333
Q ss_pred CeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEECCCCC
Q 004737 579 GATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGS 651 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg---~I~IWDl~t~~ 651 (732)
......|+|+|++++..+.+ ..|++||+.++.... +.. ........|+|||++|+..+ ++ .+.++++..
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-- 407 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-- 407 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--
Confidence 45678999999999887654 368899998886443 332 12345678999999998888 54 477788754
Q ss_pred CceeEEEeecCCCceEEEEEeCC
Q 004737 652 KGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspd 674 (732)
.....+..+...+...+|+|-
T Consensus 408 --~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 --RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --CCeEECccCCCCcCCcccCCC
Confidence 334445556777888888873
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=153.05 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=164.1
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEE
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 542 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~ 542 (732)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-+|+|||.-|++++.||.|++|.-... ...++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEE
Confidence 4688888999999987 466777888999999999999999999999999999999986532 2334455667899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 004737 543 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 621 (732)
Q Consensus 543 fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~ 621 (732)
|.|+.+.++++.+ +.+.|=.+.....+-..+. .+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988887654 5666666665544445554 4558999999999999999999999999976 4556666679999
Q ss_pred EEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 622 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 622 V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
|++++|.|+ +.++.++-.++++=. ...+.|..++||+||..+++|+..|.+.+
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999 666666655555221 23467889999999999999999996554
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.2e-13 Score=138.73 Aligned_cols=225 Identities=19% Similarity=0.286 Sum_probs=175.5
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CC
Q 004737 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NN 567 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl-~t 567 (732)
-..+|+|.+|++|...+|++.....|.||...... ....++..|...|+.|+|.|..++++ +|+.|..-++|.. ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCCC
Confidence 45789999999999999999999999999987665 34678899999999999999976555 9999999999998 43
Q ss_pred Ce---eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEEcCCCCCEEEEEEeCCCCEEEEEe-C
Q 004737 568 GS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASVS-D 639 (732)
Q Consensus 568 ~~---~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i----~~l~~h~~~V~sla~spdg~~Lasgs-D 639 (732)
++ .+..++++..++++.|+|.++.|++++....|.||-++...-- ..-+.+...|+++.|+|++-+|++|+ |
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 33 2334556788999999999999999999999999877654321 22234678899999999999999999 9
Q ss_pred CeEEEEECCC-----CC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEcc
Q 004737 640 ELVRVWSIGS-----GS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLTLSA 702 (732)
Q Consensus 640 g~I~IWDl~t-----~~----------~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--~~~~~~ 702 (732)
+..+||..-- .. ....+.++....+.+..+.|+|+|..|+..+.|..+.+-|..... ......
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence 9999987421 10 012233444567889999999999999999999999999987765 223333
Q ss_pred CCCCeeEEEEeCCC
Q 004737 703 HDKLVSSLAASTVN 716 (732)
Q Consensus 703 h~~~V~sla~spdg 716 (732)
..-+..++.|-.+.
T Consensus 248 ~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 248 AQLPLLSVSWISEN 261 (361)
T ss_pred ccCCceeeEeecCC
Confidence 33566677665443
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=3.4e-11 Score=131.60 Aligned_cols=273 Identities=12% Similarity=0.129 Sum_probs=186.0
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEEcCC--Ce--EEEEeccCCCceEEEEEcCCCCeEEEE
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH----DKKAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATS 510 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~----Dg~I~VWd~~t--~~--~~~~l~~h~~~V~~l~fspdg~~Lasg 510 (732)
.+..+..+. -......++++|++++|.++.. ++.|..|++.. ++ .+............++++|++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 344444432 2334667899999999998876 57899998775 33 333443344556789999999999998
Q ss_pred eC-CCeEEEEecCCCCceeEE--eec-----------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eee--
Q 004737 511 SA-DRTVRVWDTENPDYSLRT--FTG-----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG-- 572 (732)
Q Consensus 511 s~-Dg~I~IWDl~s~~~~~~~--l~~-----------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~-- 572 (732)
.. +|.|.++++......... ... ......++.|+|+++.++++.-....|++|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 75 899999999875322221 111 224577999999998888766556689999997654 322
Q ss_pred E--EeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEcC------CCCCEEEEEEeCCCCEEEEEe-
Q 004737 573 V--FKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 573 ~--~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~--t~~--~i~~l~~------h~~~V~sla~spdg~~Lasgs- 638 (732)
. +....+...++|+|+++++++... ++.|.+|++. ++. .+..+.. .......|+++|||++|+++.
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 2 233456889999999999888776 6789999988 442 2222221 122678999999999999887
Q ss_pred -CCeEEEEECCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEEc--cCCCCeeEEE
Q 004737 639 -DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTLS--AHDKLVSSLA 711 (732)
Q Consensus 639 -Dg~I~IWDl~t-~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl--~t~~~~~~~--~h~~~V~sla 711 (732)
++.|.+|++.. ......+..+...+.....++++|+|++|+++..+. .|.+|++ ++|.+.... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 67999999943 233456666666667789999999999999988654 8888865 577765332 2344566666
Q ss_pred E
Q 004737 712 A 712 (732)
Q Consensus 712 ~ 712 (732)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.3e-12 Score=141.82 Aligned_cols=268 Identities=19% Similarity=0.272 Sum_probs=177.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-----eCC-----CeEEEEe
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD 520 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-----s~D-----g~I~IWD 520 (732)
..++..+++++|+++|.+. +..|+|++..+++.+.+...- .++++.|+|-+.+|.+= ..+ -.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477889999999888765 579999999988655444333 78999999999998762 122 3577999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee-------------------
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------------------- 581 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~------------------- 581 (732)
+++ .+....+..-...-+++.|++|.. +. +--..+.|.+|++...+.+..--+..+++
T Consensus 112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 998 433333332222226788887742 22 12224567777765433221111112222
Q ss_pred ---------------------------------EEEEeCCCCEEEE-EEc-----------CCeEEEEECCCCeEEEEEc
Q 004737 582 ---------------------------------QMRFQPRLGRILA-AAI-----------ENYISILDVETQVCRLKLQ 616 (732)
Q Consensus 582 ---------------------------------~v~~sp~g~~ll~-~s~-----------dg~I~IwDl~t~~~i~~l~ 616 (732)
.+.|++.+.-|++ ++. +..++++++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 2344444433322 221 2257777777445555554
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEE
Q 004737 617 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW 690 (732)
Q Consensus 617 ~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~Iw 690 (732)
..++|.+++|+++++-++++. --++.|||++. ..+.. ...++-+++.|+|.|++|+.+|-++ .|.||
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 578999999999998877765 56899999965 33433 4577888999999999999988764 89999
Q ss_pred ECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE------CCCeEEEeC
Q 004737 691 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS------HDKCVKIWK 732 (732)
Q Consensus 691 Dl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs------~DG~I~IWD 732 (732)
|+.+.+++.-..- ..-+-+.|+|||.+|+|+. .|+.++||+
T Consensus 342 Dv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 342 DVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9999877733222 2335579999999999987 367899995
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.4e-13 Score=141.77 Aligned_cols=262 Identities=15% Similarity=0.204 Sum_probs=198.6
Q ss_pred CCCCCeEEEEEcCCCC--EEEEEECCCcEEEEEcCCCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 448 ASTSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~--~Lasgs~Dg~I~VWd~~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
.-...|+.++|..|++ .|...+.|..+..+.+........+ .....+|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3445688888887665 3444446677777777665544332 3445667666664 3478888899999999
Q ss_pred ecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEecc----------CCeeEEE
Q 004737 520 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQ----------SGATQMR 584 (732)
Q Consensus 520 Dl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~----------~~i~~v~ 584 (732)
....+. .++..+..+ ..+..+.-++....++++|+.. ..+.+||++..+.+..-+.- --++.+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 988543 123333333 4577777788888999999998 89999999988655544321 1156788
Q ss_pred EeCC--CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE-Ee
Q 004737 585 FQPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-EL 659 (732)
Q Consensus 585 ~sp~--g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~-~~ 659 (732)
|-+. ...|++++..+.+++||.+.+ +++..+.-.+.+|.++...|++++|+++. -+.+..||++.+ .... .+
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~ 286 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGL 286 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeecccc
Confidence 8887 788999999999999999976 67778877888999999999999999999 889999999987 3333 36
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 004737 660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd 715 (732)
.+..+.|.++..+|.++++++++-|..|+|+|+.+.+++.-..-...+++|.+.++
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 77788999999999999999999999999999999777644444556777777554
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.9e-13 Score=142.62 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=148.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 004737 539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 617 (732)
Q Consensus 539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~ 617 (732)
.+++|+.+| ..+++++.||++|+|+..... ......++..|.++.|+||+..|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 678899885 577799999999999965544 44555678889999999999999999999 999999999977666542
Q ss_pred --CCCCEEEEEEeCCC---CEEEEEe---CCeEEEEECCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737 618 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 687 (732)
Q Consensus 618 --h~~~V~sla~spdg---~~Lasgs---Dg~I~IWDl~t~~~~~--~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I 687 (732)
....+..+.|+.|+ .+++.+. -+.|+.||+....... ...........|.+++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23355677888776 3443333 4577777776543211 122222334579999999999999999999999
Q ss_pred EEEECCCCeEEE--EccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 688 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 688 ~IwDl~t~~~~~--~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.||+..+-+.+. -..|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 999999988873 34899999999999999999998888877653
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.1e-12 Score=147.78 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=162.0
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
..+.++|...+ ..+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|+||
T Consensus 182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 34455554332 23456678889999999999999888764 468999999887654 44456667889999999
Q ss_pred CCeEE-EEeCCCe--EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccC
Q 004737 504 LSRLA-TSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 504 g~~La-sgs~Dg~--I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~ 578 (732)
|+.|+ +.+.++. |.+||+.++. .+.+..+........|+||++.++++...+| .|++||+..++.........
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 99876 4555554 7777887654 4556666666788999999988887665544 68888988766554444445
Q ss_pred CeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-----CeEEEEECC
Q 004737 579 GATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRVWSIG 648 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-----g~I~IWDl~ 648 (732)
.+....|+|+++.|+....+ ..|.+||+..+.. ..+. ....+..+.|+|||+.|+... . ..++++|+.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 56778999999999887654 3688899866543 3333 233567889999999887755 2 257778876
Q ss_pred CCCCceeEEEeecCCCceEEEEEeC
Q 004737 649 SGSKGECIHELSCTGNKFHSCVFHP 673 (732)
Q Consensus 649 t~~~~~~i~~~~~~~~~I~sl~fsp 673 (732)
.... ..+. ....+...+|+|
T Consensus 413 g~~~----~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 GRNE----REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCce----EEcc-CCCCccCcccCC
Confidence 5421 2222 233455667765
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=8.2e-13 Score=148.48 Aligned_cols=223 Identities=17% Similarity=0.184 Sum_probs=152.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE-EEeCCCeEEEEe
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 520 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWD 520 (732)
.+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+++|+|||+.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 355678889999999999999887643 359999999887643 333445667899999999887 456788777776
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl--~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
++......+.+..+...+....|+|||+.+++++..++...+|.+ .++................|+|+|++++..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 543222345555566666788999999888877666666666654 444433322222234567899999999887765
Q ss_pred C---eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 599 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 599 g---~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
+ .|++||+.+++... +.. ........|+|||++|+.++ .+ .+.+.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999998876543 322 23446789999999988877 33 45666663 2 233334444556666777
Q ss_pred eCC
Q 004737 672 HPT 674 (732)
Q Consensus 672 spd 674 (732)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
No 225
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=1.8e-12 Score=145.07 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=161.8
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
..|.++|..... ...+..+...+...+|+|||++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 44455577789999999999999988754 4899999987653 33444556677899999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737 549 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 549 ~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~ 623 (732)
.++++.+.++ .|++||+.++................|+|++.+|++++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999877655444433345577899999998877653 3 6888898877643 3443556677
Q ss_pred EEEEeCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737 624 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 696 (732)
Q Consensus 624 sla~spdg~~Lasgs-Dg---~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~ 696 (732)
.+.|+|++++|+.+. ++ .|.+||+.++.. . .+.. ........|+|++++|++...++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~---~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R---VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E---EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 789999877421 1 1211 12234568999999988887765 56666765544
Q ss_pred EEEEccCCCCeeEEEE
Q 004737 697 TLTLSAHDKLVSSLAA 712 (732)
Q Consensus 697 ~~~~~~h~~~V~sla~ 712 (732)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444555555555
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=5.3e-13 Score=136.93 Aligned_cols=277 Identities=17% Similarity=0.316 Sum_probs=190.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----EEEEeccC------------CCceEEEEEcCCC--CeEEEE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSL--SRLATS 510 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h------------~~~V~~l~fspdg--~~Lasg 510 (732)
.+-|.++.|..+|.+||+|..+|.|.+|.-+... ....+..| ...|..++|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999644321 22333333 3458889998864 467778
Q ss_pred eCCCeEEEEecCCCCcee----------------------------------EE-eecCCcceEEEEEcCCCCcEEEEEe
Q 004737 511 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD 555 (732)
Q Consensus 511 s~Dg~I~IWDl~s~~~~~----------------------------------~~-l~~h~~~V~sl~fspdg~~llaSgs 555 (732)
+.|++|++|.+....... +. -.+|+-.|.+|.++.|...++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 899999999886432111 11 135888899999999987766 554
Q ss_pred CCCcEEEEECCCCe-eeeEEec--------cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 004737 556 NNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------RLK----- 614 (732)
Q Consensus 556 ~Dg~I~iWDl~t~~-~i~~~~~--------~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~------i~~----- 614 (732)
|-.|.+|+++--. +...... ..-|++..|+|.. +.++..+..|.|++.|++.... +..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 8889999986432 2222221 1237888999964 5677788899999999984321 111
Q ss_pred -----EcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC------------C---ceEEEEEeCC
Q 004737 615 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 674 (732)
Q Consensus 615 -----l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~------------~---~I~sl~fspd 674 (732)
+.+--..|..+.|+++|+|+++-+--+|++||+.... .++.++..|. . .-..|+|+-+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112246788999999999998877899999996543 3344433332 1 2356899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEc--------------------cC-------------CCCeeEEEEeCCCCEE
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 719 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~--~~~--------------------~h-------------~~~V~sla~spdg~~L 719 (732)
+.++++|+....+++|+...|... ++. +. ...|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544322 000 00 1125566899999999
Q ss_pred EEEECCCeEEEe
Q 004737 720 ASASHDKCVKIW 731 (732)
Q Consensus 720 aSgs~DG~I~IW 731 (732)
|.+.... +.||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 4443
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=6.7e-11 Score=129.32 Aligned_cols=267 Identities=14% Similarity=0.180 Sum_probs=182.2
Q ss_pred EEEEECC----CcEEEEEc--CCCeEE--EEeccCCCceEEEEEcCCCCeEEEEeC----CCeEEEEecCCCCcee---E
Q 004737 465 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL---R 529 (732)
Q Consensus 465 Lasgs~D----g~I~VWd~--~t~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~----Dg~I~IWDl~s~~~~~---~ 529 (732)
+++|+.. +.|.+|++ ++++.. ..+. .......++++|++++|+++.. ++.|..|++......+ .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556655 68888877 455443 2222 3345678899999999999877 5799999988752122 2
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---Ee-----------ccCCeeEEEEeCCCCEEEE
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILA 594 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~---~~-----------~~~~i~~v~~sp~g~~ll~ 594 (732)
...........++++|+++.++++...+|.|.++++.. +..... +. ......++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 22223445678999999988888888899999999987 443332 21 1234789999999999988
Q ss_pred EEc-CCeEEEEECCCCe--E--EEEEc-CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC-CceeEEEeecC---
Q 004737 595 AAI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT--- 662 (732)
Q Consensus 595 ~s~-dg~I~IwDl~t~~--~--i~~l~-~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~-~~~~i~~~~~~--- 662 (732)
... ...|.+|++.... . ...+. ......+.++|+|+++++++.. ++.|.+|++.... ....+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 776 4689999997654 2 22222 2445678999999999998887 7899999998221 22333333221
Q ss_pred ---CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCeEE---EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737 663 ---GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 732 (732)
Q Consensus 663 ---~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~--t~~~~---~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD 732 (732)
......++++||+++|+++... +.|.+|++. ++++. .+.........++++|++++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999888754 489999983 34443 2223345689999999999999887 566888874
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=1.5e-14 Score=153.10 Aligned_cols=228 Identities=16% Similarity=0.195 Sum_probs=190.8
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 573 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~ 573 (732)
.-+.+.|+.+|++|+.|+..|.|-.+|+.+... ...+ .-...|.++.|..+ +.++|++ ....++|||-. |..++.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei-~v~Etv~Dv~~LHn-eq~~AVA-QK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEI-NVMETVRDVTFLHN-EQFFAVA-QKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee-eeee-ehhhhhhhhhhhcc-hHHHHhh-hhceEEEecCC-CcEEee
Confidence 356789999999999999999999999998764 2222 23467889999876 4566454 47789999965 778888
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
++....+..+.|-|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+-.+-+|. .|+|.+|.....
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-- 283 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-- 283 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--
Confidence 88889999999999977788888899999999999999999988889999999999999999888 999999999876
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
+++..+-+|.++|.++++.++|.|+++++.|..++|||++....+ ++.. ......++||..| +++++....|.||
T Consensus 284 -ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 284 -EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred -chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 677788899999999999999999999999999999999988765 3333 4567788888655 4555666689999
Q ss_pred C
Q 004737 732 K 732 (732)
Q Consensus 732 D 732 (732)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 4
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6e-12 Score=141.68 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=163.4
Q ss_pred cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737 473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 549 (732)
Q Consensus 473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~ 549 (732)
.|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+ ..|.+||+.++.. +.+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477888775543 4455577789999999999999877654 3689999987653 333334445667899999988
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737 550 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 624 (732)
Q Consensus 550 llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~V~s 624 (732)
++++...++ .|++||+.+++...............|+|+++.++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 6888899988765544444446678999999988877653 368888988776433222 2233446
Q ss_pred EEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 004737 625 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 697 (732)
Q Consensus 625 la~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~ 697 (732)
..|+|+|++|+... ++ .|.+||+.++.. ..+ .. ........|+|+|+.++..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 222 11 11223558999999998877653 688888876655
Q ss_pred EEEccCCCCeeEEEEeCC
Q 004737 698 LTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 698 ~~~~~h~~~V~sla~spd 715 (732)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 555556667788888863
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=4.7e-12 Score=129.21 Aligned_cols=230 Identities=13% Similarity=0.180 Sum_probs=168.5
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCC
Q 004737 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN 567 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t 567 (732)
...++|+-|...+++|..+| .+||+++--+... +.+....-.+..+-|-. +.+...|+.+ ..|.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc
Confidence 45599999999999997766 8999987532211 11111112233333332 3455555543 4799999888
Q ss_pred CeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe--CCeE
Q 004737 568 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGH--KNQVHSVCWNTSGEYLASVS--DELV 642 (732)
Q Consensus 568 ~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h--~~~V~sla~spdg~~Lasgs--Dg~I 642 (732)
.+++..+....+|..+.+.++ .++.-.++.|+||.... .+.++.+... ...+.+++-..+..+|+.-+ -|.|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 899999999999999999986 45556679999999874 4555555432 23344444333455666655 7899
Q ss_pred EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEc--cCCCCeeEEEEeCCCCE
Q 004737 643 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNGM 718 (732)
Q Consensus 643 ~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~-~~~--~h~~~V~sla~spdg~~ 718 (732)
.|-|+...... .-..+..|...|.+++..-+|..+|+++..| -|+|||..+|..+ .+. .....|.+|+|||+..+
T Consensus 162 Qi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999875331 2356788999999999999999999999999 5899999999988 443 34568999999999999
Q ss_pred EEEEECCCeEEEe
Q 004737 719 VASASHDKCVKIW 731 (732)
Q Consensus 719 LaSgs~DG~I~IW 731 (732)
|+++|+.|+|+||
T Consensus 241 LavsSdKgTlHiF 253 (346)
T KOG2111|consen 241 LAVSSDKGTLHIF 253 (346)
T ss_pred EEEEcCCCeEEEE
Confidence 9999999999997
No 231
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=1.6e-12 Score=151.07 Aligned_cols=251 Identities=16% Similarity=0.218 Sum_probs=173.6
Q ss_pred EEcCCCeEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCc------eeEEeecCCcceEEEEEcCCCCc
Q 004737 477 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 549 (732)
Q Consensus 477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~------~~~~l~~h~~~V~sl~fspdg~~ 549 (732)
|+. .|..+..+..|...|..++.+++. .+|++|+.||+|++||...-.. ...++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 467888889999999999998755 9999999999999999874221 12234445678999999988755
Q ss_pred EEEEEeCCCcEEEEECCCCe-------eeeEEe--ccCCeeEE-EEeCC-CC-EEEEEEcCCeEEEEECCCCeEEEEEc-
Q 004737 550 LLCSCDNNSEIRYWSINNGS-------CAGVFK--CQSGATQM-RFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ- 616 (732)
Q Consensus 550 llaSgs~Dg~I~iWDl~t~~-------~i~~~~--~~~~i~~v-~~sp~-g~-~ll~~s~dg~I~IwDl~t~~~i~~l~- 616 (732)
++ .++.||.|++.+++... +.+... ..+.+..+ +|... .. .++.+...+.|..||+++.....+++
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 66889999999987521 111111 22233332 33322 23 57777888999999999876555444
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceEEEEEeCCC---CEEEEEEc--CCeEE
Q 004737 617 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTF---PSLLVIGC--YETLE 688 (732)
Q Consensus 617 -~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~~~~~I~sl~fspdg---~~L~sgs~--dg~I~ 688 (732)
...+.|++++.+|.+.+++.|. .|.+.+||++-. ..+..+. .+..++..+..+|-. ...++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2457899999999999999999 899999999876 4444433 334667777666644 34554444 56899
Q ss_pred EEECCCCeEE-EEccC-------------------CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 689 LWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 689 IwDl~t~~~~-~~~~h-------------------~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|++.++... .+... .-....+++...+.++++|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988544 11111 11122333444466999999999999998
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.3e-12 Score=136.30 Aligned_cols=236 Identities=16% Similarity=0.172 Sum_probs=183.2
Q ss_pred CCceEEEEEcCCCC--eEEEEeCCCeEEEEecCCCCceeE-----EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737 492 TQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 492 ~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~s~~~~~~-----~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD 564 (732)
...|+.++|.-++. .|+.++.|..+..+.+......-. .......+|..+... +..|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence 45677788866543 455555677777777765543211 334455677777665 23455888899999999
Q ss_pred CCCCe----eeeEEeccCCeeEEEEeCCCCEEEE-EEcC--CeEEEEECCCCeEEEEEcCC---------CCCEEEEEEe
Q 004737 565 INNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCWN 628 (732)
Q Consensus 565 l~t~~----~i~~~~~~~~i~~v~~sp~g~~ll~-~s~d--g~I~IwDl~t~~~i~~l~~h---------~~~V~sla~s 628 (732)
.+.+. .+..+....++..+.-++...+|++ |+.. ..+.|||++..+.+..-+.- .-+++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 98433 3444555677777887777666665 7777 78999999988766654432 2256788998
Q ss_pred CC--CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccC
Q 004737 629 TS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAH 703 (732)
Q Consensus 629 pd--g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h 703 (732)
+. ...|+++. -+.|++||.+... +++..+.....++.++...|++++|+++..-+.+..||++.++.. .+.+.
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 87 78889888 8999999999654 678888888999999999999999999999999999999999988 47789
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 704 DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 704 ~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+.|++|..+|...+|++|+-|..|+|+|
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEee
Confidence 99999999999999999999999999997
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=2.4e-11 Score=133.41 Aligned_cols=264 Identities=10% Similarity=0.050 Sum_probs=172.1
Q ss_pred CEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737 463 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 541 (732)
Q Consensus 463 ~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl 541 (732)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+ .+..+... ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-VVATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-EEEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-EEEEEecC-CCcceE
Confidence 344 455568999999999999999998665544557899999999999999999999999977 45555543 346889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--------CCeeEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 612 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--------~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i 612 (732)
++++||+++++++...+.+.++|.++.+.+..+... ..+..+..++....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999988889999999999999998877632 246677778888877777665 89999998765322
Q ss_pred -EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec----CCCceEEE-------EE--eCCCC
Q 004737 613 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC-------VF--HPTFP 676 (732)
Q Consensus 613 -~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl-------~f--spdg~ 676 (732)
..............|+|+++|++++. ++.|-++|..+. +.+..+.. |..+...+ .| ...+.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 22323456778899999999988876 779999999876 33333221 22222222 12 12223
Q ss_pred EEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE----ECCCeEEEeC
Q 004737 677 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 732 (732)
Q Consensus 677 ~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg----s~DG~I~IWD 732 (732)
..+..-..+.+.+||....+.+ .+...... ..+..+|++++|+.. ...+.|.|+|
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 3323333345667888888888 44444444 788889999999988 3446787775
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=133.20 Aligned_cols=229 Identities=16% Similarity=0.182 Sum_probs=162.2
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 568 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---- 568 (732)
..+..++|++.-..+|++..|-.|++||-.. +.+..........|+|++|-|.+...++.|... -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 3477889998777788999999999999876 332333333456899999999988888777754 5999976421
Q ss_pred e--------eeeEEe--ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737 569 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 569 ~--------~i~~~~--~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg 637 (732)
. +...++ .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.+.-+.|+||+.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 112222 3456999999999999998876 5799999999987766554456788999999999999998
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCe----------EE-------
Q 004737 638 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENK----------TL------- 698 (732)
Q Consensus 638 s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~----------~~------- 698 (732)
. |+..++|.....- .+. ......+.|...+|+|+|++|+.+.... .|+-....... ..
T Consensus 257 t~davfrlw~e~q~w--t~e-rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSW--TKE-RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhcccc--eec-ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 8 9999999654321 122 2223345899999999999877665543 33322221110 11
Q ss_pred --EEcc----CCCCeeEEEEeCCCCEEEEEECCC
Q 004737 699 --TLSA----HDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 699 --~~~~----h~~~V~sla~spdg~~LaSgs~DG 726 (732)
+... ..+.+.+++|.|.|.+||+.-..+
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 146789999999999999876543
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1.5e-12 Score=140.19 Aligned_cols=169 Identities=18% Similarity=0.259 Sum_probs=131.2
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEe----ccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCC---------
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--------- 525 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l----~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~--------- 525 (732)
+++--|+.|-.-|.|.+.|....+..+.+ .-....|+|+.|-|. ...|+++-.+|.+.+||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45556778888889999887653222212 123478999999984 4567777789999999764110
Q ss_pred ------------------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEe
Q 004737 526 ------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQ 586 (732)
Q Consensus 526 ------------------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~s 586 (732)
.++..+.-..+.|..++|+||| .+||+.+.||.+||||..+.+++..++ ..++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0111222234578899999986 566688899999999999888776665 35789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
|||++|++|+.|.-|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=9e-12 Score=140.75 Aligned_cols=233 Identities=15% Similarity=0.098 Sum_probs=158.5
Q ss_pred cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC-C--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737 473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 549 (732)
Q Consensus 473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~ 549 (732)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.++.. ..+....+......|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 677778765443 4455567789999999999998877543 2 688899987653 223322334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-C--CeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737 550 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS 624 (732)
Q Consensus 550 llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-d--g~I~IwDl~t~~~i~~l~~h~~~V~s 624 (732)
++++.+.++. |++||+.+++..............+|+|++++++..+. + ..|+++|+.+++.... .........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 8888777775 88889988776544443344677899999999887765 3 3577888887764432 212233446
Q ss_pred EEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 004737 625 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 697 (732)
Q Consensus 625 la~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~ 697 (732)
.+|+|||++|+..+ ++ .|.++|+.++.. . .+... .......|+|+|+.|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~---~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-Q---VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-E---EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566678776532 1 12211 1222458999999888876654 488888865555
Q ss_pred EEEccCCCCeeEEEEeC
Q 004737 698 LTLSAHDKLVSSLAAST 714 (732)
Q Consensus 698 ~~~~~h~~~V~sla~sp 714 (732)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56656667788888887
No 237
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.49 E-value=5.4e-13 Score=132.70 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=183.0
Q ss_pred eeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 004737 404 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 482 (732)
Q Consensus 404 v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~ 482 (732)
+.+..++++-+++ +.....++.+|...+.. .+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++...
T Consensus 17 v~s~~fqa~~rL~-----sg~~~G~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 17 VTSVLFQANERLM-----SGLSVGIVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred heehhhccchhhh-----cccccceEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence 3444444444443 33445678888877764 455677 67888999999987 57888899999999999875
Q ss_pred eEEEEeccCCCceEEEEEcC-----CCC----eEEEEeCCC-eEEEEecCCCCceeEEe----ecCCcceEEEEEcC--C
Q 004737 483 TVKSTLEEHTQWITDVRFSP-----SLS----RLATSSADR-TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHP--S 546 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fsp-----dg~----~Lasgs~Dg-~I~IWDl~s~~~~~~~l----~~h~~~V~sl~fsp--d 546 (732)
..+.. |.-.++++.|.+ .++ .++.-+... .+.+-|..... .+... .+..+.++|..+.- .
T Consensus 88 ~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 88 AFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccccc
Confidence 54432 333344444433 111 111111110 01222222111 01111 12345677777543 2
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEE-----------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--e--E
Q 004737 547 KEDLLCSCDNNSEIRYWSINNGSCAGVF-----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V--C 611 (732)
Q Consensus 547 g~~llaSgs~Dg~I~iWDl~t~~~i~~~-----------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--~--~ 611 (732)
...++++|..+|.|.+||+.++..+..+ .+..++.++.|.+.-..=+.++.+..+..|.+... . .
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 3456778889999999999987433222 24567888999876666677777888888887643 1 1
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
...+.-..-.|..+.+-||++++++++ |+.||||+.++. ..+..+..|...|.+++|+|+...+++++.|..|.+|
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence 122222344688899999999999999 999999999988 7788888899999999999999999999999999999
Q ss_pred EC
Q 004737 691 NM 692 (732)
Q Consensus 691 Dl 692 (732)
++
T Consensus 321 kL 322 (323)
T KOG0322|consen 321 KL 322 (323)
T ss_pred ec
Confidence 86
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=2.1e-12 Score=132.79 Aligned_cols=251 Identities=16% Similarity=0.270 Sum_probs=190.1
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I 516 (732)
.+..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++....+. .-..+++++.+.++...|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 33456678999999999999998888999999999999953 3455444442 234678999999999999999999999
Q ss_pred EEEecCCC---CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEE
Q 004737 517 RVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 593 (732)
Q Consensus 517 ~IWDl~s~---~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll 593 (732)
.-+.+... ....+.+..|...|..+.|+..- ..+++++.|..+.---.+.+..+..+......+++.+.-. +.+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEE
Confidence 98876532 12356778899999999998764 4555788787665444455554443333333333333322 556
Q ss_pred EEEcCCeEEEEEC--CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737 594 AAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 594 ~~s~dg~I~IwDl--~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~ 670 (732)
+|...|.|.+..+ ..-..+.++.+|.+.+++++|.+....|++|. |..|.+||+.... ....++.+|...|..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQALS 247 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhhh
Confidence 6666776666544 44577889999999999999999999999998 8899999997653 45667788899999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCC
Q 004737 671 FHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 671 fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
..+.-+.+++++.|+.|.+||++.
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhheeeeeccCCCeEEEEeccc
Confidence 888888999999999999999864
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.5e-13 Score=146.13 Aligned_cols=216 Identities=19% Similarity=0.267 Sum_probs=158.4
Q ss_pred eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEE
Q 004737 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR 561 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~ 561 (732)
.....+.+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.....-.+|...|.++.|-|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3345688999999999999999999999999999999998766655677899999999999985 467888999999999
Q ss_pred EEECCCCe----------eeeEEe-ccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE-E------E---EEcCCC
Q 004737 562 YWSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-R------L---KLQGHK 619 (732)
Q Consensus 562 iWDl~t~~----------~i~~~~-~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~-i------~---~l~~h~ 619 (732)
+||+...+ ....+. +...|..++..|++ ..+.+++.||+|+-||++.... . . .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99997421 222222 22457778888888 6788999999999999986321 1 1 111122
Q ss_pred CCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCC---------------ceeEEEeec-C--------C---CceEEEE
Q 004737 620 NQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---------------GECIHELSC-T--------G---NKFHSCV 670 (732)
Q Consensus 620 ~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~---------------~~~i~~~~~-~--------~---~~I~sl~ 670 (732)
-...|+.++|.. .+|++|+ |-..++||.+...+ ..|+.-+.. | . ..++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 356789999965 5677777 77999999532110 012222211 1 1 1245678
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 671 FHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 671 fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
|+|+|.-|++.-....|+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 9999988888877789999999887654
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.8e-11 Score=136.24 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=151.2
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEE-EeCCC--eEE
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 517 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~I~ 517 (732)
+.+..|...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.++ .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677889999999999999877644 369999999876543 3333445667899999998874 44454 688
Q ss_pred EEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 518 IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~ 595 (732)
+||+.++. ...+..+........|+|+++.++++...++ .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666778899999988887776554 5777888877754433222234457899999999887
Q ss_pred EcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEE
Q 004737 596 AIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 668 (732)
Q Consensus 596 s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~s 668 (732)
..+ + .|.+||+.+++... +. +........|+|||+.|+..+ ++ .|.++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 754 3 58899998876533 22 122233568999999988776 33 5777777543 22233334455666
Q ss_pred EEEeCC
Q 004737 669 CVFHPT 674 (732)
Q Consensus 669 l~fspd 674 (732)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 667653
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=7.6e-12 Score=135.73 Aligned_cols=238 Identities=15% Similarity=0.182 Sum_probs=171.3
Q ss_pred cCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737 490 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 490 ~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~ 568 (732)
+|....+.|..+|||.|+ |+|.+.-.|++||+.+-. ++.-......+..+....++-.-++.-..|.+|-+-.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhc--
Confidence 477788999999999985 566677899999998733 333332233444443333322222233346666554322
Q ss_pred eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737 569 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 569 ~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl 647 (732)
-....+..+..-..++++.-..-|++++....|+-++++.|..+..+....+.+++|..++-..+|++|. +|.|.+||.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 2223333445556677776667788899999999999999999988888889999999999999999999 999999999
Q ss_pred CCCCCceeEE---EeecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCC--CCeeEEEEeCC--
Q 004737 648 GSGSKGECIH---ELSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV-- 715 (732)
Q Consensus 648 ~t~~~~~~i~---~~~~~~-----~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~--~~V~sla~spd-- 715 (732)
++......+. .+..+. ..|+++.|+.+|-.+++|+.+|.|+|||++..+++....|. -+|..+.|-+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 8864322221 111222 24999999999999999999999999999999999777775 47888888665
Q ss_pred CCEEEEEECCCeEEEeC
Q 004737 716 NGMVASASHDKCVKIWK 732 (732)
Q Consensus 716 g~~LaSgs~DG~I~IWD 732 (732)
...|+++ +...++|||
T Consensus 285 q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWD 300 (703)
T ss_pred CceEEec-chHHhhhcc
Confidence 3466665 446789997
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=7.3e-13 Score=135.12 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=158.6
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737 497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 575 (732)
Q Consensus 497 ~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~- 575 (732)
-++|+|+|+++|+++.- .+.|-|.++-+ +..+...-+.|.-+.|..+...+++....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq--~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ--LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh--HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999755 77777777643 222222245788899999989999999999999999999888776665
Q ss_pred ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCC
Q 004737 576 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 650 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~ 650 (732)
...++..++|+|+|+.++..+. +-.|.+|.+.+.+....-. .+..+..++|+|||++.+.++ |. .+.|....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-- 166 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-- 166 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhhH--
Confidence 4567899999999988776554 8899999999887654322 345678999999999999888 33 23333222
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
....+.++....-..+.+.|+|||..|++ ||..-.-.+-.....-.+..++|+|.+++|+.|+.|+.++|
T Consensus 167 -~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 167 -AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred -HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhh
Confidence 22344455555566788999999996654 44221111111122346888999999999999999999887
Q ss_pred e
Q 004737 731 W 731 (732)
Q Consensus 731 W 731 (732)
-
T Consensus 237 l 237 (447)
T KOG4497|consen 237 L 237 (447)
T ss_pred h
Confidence 3
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=139.59 Aligned_cols=268 Identities=15% Similarity=0.191 Sum_probs=205.5
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCC-CeE--EEEeccCCCceE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES-FTV--KSTLEEHTQWIT 496 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t-~~~--~~~l~~h~~~V~ 496 (732)
..+.|+.+.+|+|.++.. ......+|...|.-..|-| +...|++++.||.|++=.+.. +.+ ...+..|.++|.
T Consensus 159 SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh 236 (559)
T KOG1334|consen 159 SGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH 236 (559)
T ss_pred ccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccc
Confidence 566788999999999864 2344568999999999988 456799999999999987653 322 355677999999
Q ss_pred EEEEcCCC-CeEEEEeCCCeEEEEecCCCCce--eEEeecCCc---ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 497 DVRFSPSL-SRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 497 ~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~--~~~l~~h~~---~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
.++.-|+. .-|.+++.|+.+.-+|++..... +.....+.. ....|+..|...+.+++++.|-.+++||.+.-..
T Consensus 237 klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 237 KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 99999964 46899999999999999865421 112222333 5688999999888999999999999999864221
Q ss_pred e------eEE-------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC--C----------eEE-EEEcCCCC--CE
Q 004737 571 A------GVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q----------VCR-LKLQGHKN--QV 622 (732)
Q Consensus 571 i------~~~-------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t--~----------~~i-~~l~~h~~--~V 622 (732)
. ..+ ...-.|++++|+.++..++++..|-.|++|.-.- + ..+ ..+++|.. .|
T Consensus 317 e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 317 EENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 1 111 1234589999999999999999999999995432 1 112 23677765 46
Q ss_pred EEEEE-eCCCCEEEEEeC-CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 623 HSVCW-NTSGEYLASVSD-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 623 ~sla~-spdg~~LasgsD-g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
.++-| -|...|+++|+| |.|.||+-.++ +.+..+.+...-|+|+.-+|.-..|++++-|..|+||--.+
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 67755 578899999995 69999999887 66666666677899999999999999999999999997643
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.4e-11 Score=133.89 Aligned_cols=220 Identities=18% Similarity=0.194 Sum_probs=147.2
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEE-EeCCCe--EEE
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 518 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--I~I 518 (732)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+.|+. .+.++. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 455667789999999999998876543 258899998876533 2222334457899999998775 455664 777
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s 596 (732)
||+.++. .+.+..+.......+|+||+..++++...++ .|+++|+.+++..............+|+|++++++..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4455556566788999999988887776555 46677887776544322222234578999999988876
Q ss_pred cC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737 597 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 669 (732)
Q Consensus 597 ~d-g--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl 669 (732)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .+++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 54 3 56778888876533 2222 1223458999999887766 44 477777643 2333444445556677
Q ss_pred EEeC
Q 004737 670 VFHP 673 (732)
Q Consensus 670 ~fsp 673 (732)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7776
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=1.5e-10 Score=124.49 Aligned_cols=273 Identities=16% Similarity=0.229 Sum_probs=194.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCC---------------cEEEEEcCCCeEEEEeccCCCc--eE-EEEEcCCCCeEEEEeC
Q 004737 451 SKVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 512 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg---------------~I~VWd~~t~~~~~~l~~h~~~--V~-~l~fspdg~~Lasgs~ 512 (732)
..|..+.|+|.++||++-+... .+.|||+.++..+..+..-..+ .+ -+.|+.+.+|+|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 3499999999999999976543 4999999999999998776655 55 68899988887766 3
Q ss_pred CCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCC-cEEEE-----EeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737 513 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKE-DLLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 584 (732)
Q Consensus 513 Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~-~llaS-----gs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~ 584 (732)
...++|+++ ++.....-+..- ...|....|+|.++ ..||. ....+.+++|.+..+..+..... ...-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 447999997 433222211111 25678888888742 22332 34578899999987666544332 23345688
Q ss_pred EeCCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCC
Q 004737 585 FQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 650 (732)
Q Consensus 585 ~sp~g~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~ 650 (732)
|.+.|.++++-.. +..+++++++...+.... .-.++|...+|.|.++.+++++ +-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 9998888765432 356889998855444433 5688999999999988777665 679999999864
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE----
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---- 723 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs---- 723 (732)
.. +......-+.+.|+|.++++++++-++ .|.+||......+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 22 223355567789999999999988765 89999988776663222233445678999999888764
Q ss_pred --CCCeEEEeC
Q 004737 724 --HDKCVKIWK 732 (732)
Q Consensus 724 --~DG~I~IWD 732 (732)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 478899996
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.5e-10 Score=130.05 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=158.0
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe--E-EEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 546 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspd 546 (732)
..|.+.|.+.+... .+......+..-+|+|||+. + ++...+| .|.+.++..+. .+.+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCC
Confidence 36777777655443 34445566788899999975 3 2443443 57777887665 2333434555667899999
Q ss_pred CCcEEEEEeCCC----cEEEEECCCC---eeeeEEecc-CCeeEEEEeCCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 004737 547 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 614 (732)
Q Consensus 547 g~~llaSgs~Dg----~I~iWDl~t~---~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~-dg~--I~IwDl~t-~~~i~~ 614 (732)
|+.++++...+| .+.+|++..+ +........ ......+|+|+|+.|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998888775433 3444777653 333333222 23467899999998887764 554 55556542 233444
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 004737 615 LQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 687 (732)
Q Consensus 615 l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I 687 (732)
+..+...+....|+|||+.|+... ++ .|.+||+.++.. ..+......+....|+|||++|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 544556778899999999988776 33 799999988732 2222223456778999999988876543 379
Q ss_pred EEEECCCCeEEEEccCCCCeeEEEEeCCC
Q 004737 688 ELWNMTENKTLTLSAHDKLVSSLAASTVN 716 (732)
Q Consensus 688 ~IwDl~t~~~~~~~~h~~~V~sla~spdg 716 (732)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999988877666666677788888753
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=1.3e-09 Score=117.59 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=169.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC----------CCeEEEEecCCCCceeEEeecC-------
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 534 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~s~~~~~~~l~~h------- 534 (732)
+.|.|.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.|||+.+.+. +..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998887544433 24 9999998887765 78999999999774 4333321
Q ss_pred CcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeE-
Q 004737 535 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 611 (732)
Q Consensus 535 ~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~- 611 (732)
......++++|||+.++++--. +..|.++|+.+++.+..+....+..-...+... +.+-+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCCceE
Confidence 1233478999999888866634 899999999999999988865543333333222 22333444444433322 111
Q ss_pred EEE---EcCCCCCEEE-EEEeC-CCCEEEEEeCCeEEEEECCCCCC--ceeEEEeec-------CCCceEEEEEeCCCCE
Q 004737 612 RLK---LQGHKNQVHS-VCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPS 677 (732)
Q Consensus 612 i~~---l~~h~~~V~s-la~sp-dg~~LasgsDg~I~IWDl~t~~~--~~~i~~~~~-------~~~~I~sl~fspdg~~ 677 (732)
... +.....++.. -.|.+ +|++++...+|.|.+.|+..... ...+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 1110111100 03455 88888888899999999755321 112222111 1233445999999999
Q ss_pred EEEEE----------cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEeC
Q 004737 678 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 732 (732)
Q Consensus 678 L~sgs----------~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWD 732 (732)
+++.. ..+.|.++|..+++.+....-...+..+++++|++ +|++.. .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 98853 12479999999999996655567899999999999 888766 577788875
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.2e-10 Score=130.45 Aligned_cols=205 Identities=15% Similarity=0.187 Sum_probs=147.9
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCE
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 591 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 591 (732)
..|.++|..... .+.+..+...+...+|+|+++.++++...+ ..|++||+.+++..........+..++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455566777899999999998887665443 4799999998876555555556777999999998
Q ss_pred EEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCC
Q 004737 592 ILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 664 (732)
Q Consensus 592 ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~ 664 (732)
|++... ++ .|++||+.++... .+..+........|+||++.|+.++ ++ .|++||+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 33 6999999887543 3344545556789999999887766 33 68888887652 223333455
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 665 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
.+....|+|++++++.+..++ .|++||+.++....+... .......|+|++++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988765544332 2345678999999888877654
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.5e-10 Score=130.05 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=142.6
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc--EEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCC
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRL 589 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~--llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g 589 (732)
+.|.+.|.+... .+.+......+.+-.|+|||.. ++++...++ .|++.++..++........+......|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 357777776543 3445545666788899999876 333554443 5888899888766655555667778999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEE--ECCCCCCceeEE
Q 004737 590 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGECIH 657 (732)
Q Consensus 590 ~~ll~~s~-dg----~I~IwDl~t~---~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IW--Dl~t~~~~~~i~ 657 (732)
+.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ +|...+| ++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99887764 22 3444777652 33333333334456789999999888766 5644444 443211 1223
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC-C--CeEEEe
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 731 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~-D--G~I~IW 731 (732)
.+......+....|+|||++|+....+ ..|++||+.+++...+......+....|+||+++|+.... + ..|.+|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333344566788999999999887654 3799999999988766555556788999999998775443 2 345555
Q ss_pred C
Q 004737 732 K 732 (732)
Q Consensus 732 D 732 (732)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=3.5e-09 Score=110.66 Aligned_cols=268 Identities=12% Similarity=0.099 Sum_probs=185.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCC--CeEEE--EeccCCCceEEEEEcCCCCeEEEEeC-CCeEE
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVR 517 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~ 517 (732)
+-.+.+.++-|+|+|+.++|.++-. +|.|..|.++. |++.. .......+-+.+++++++++|+++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456677899999999999988765 47788887764 54432 22222333488999999999999876 57999
Q ss_pred EEecCCCCcee--EEeecCCcc----------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----EEeccCCee
Q 004737 518 VWDTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKCQSGAT 581 (732)
Q Consensus 518 IWDl~s~~~~~--~~l~~h~~~----------V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~----~~~~~~~i~ 581 (732)
++-+....... .....|.+. +.+..|.|+++.+++..=.--.|.+|++..++... .++...+..
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 99986543211 123335554 88899999976665443333469999999776543 223446689
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcC---------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 004737 582 QMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 648 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~-dg~I~IwDl~t~-~~i~~l~~---------h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~ 648 (732)
.+.|+|++++.++.++ +++|.+|..+.. ..+..+.. ...+...|.+++||++|+++. .+.|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999999999887776 899999998873 22222221 234677899999999999988 4588888887
Q ss_pred CCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEEc--cCCCCeeEEEEe
Q 004737 649 SGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTLS--AHDKLVSSLAAS 713 (732)
Q Consensus 649 t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl--~t~~~~~~~--~h~~~V~sla~s 713 (732)
.... ...+.....++..-..+.|++++++|+++..++ .|.+|.+ ++|++-.+. .......|+.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 6432 334444445555578899999999999999877 6777755 556655222 344455666664
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.9e-11 Score=120.10 Aligned_cols=146 Identities=17% Similarity=0.333 Sum_probs=107.8
Q ss_pred eeEEEEeCCCCEEEEEEc----------CCeEEEEECCCC-eEEEEEcC-CCCCEEEEEEeCCCCEEEEEe---CCeEEE
Q 004737 580 ATQMRFQPRLGRILAAAI----------ENYISILDVETQ-VCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 644 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~----------dg~I~IwDl~t~-~~i~~l~~-h~~~V~sla~spdg~~Lasgs---Dg~I~I 644 (732)
-..+.|+++|.+|++-.. -+...+|.++.. ..+..+.- ..++|.+++|+|+|+.|+++. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346788888888766544 234555555322 22333322 345799999999999876653 669999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaS 721 (732)
||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+.+.+.+....|. .++.++|+|||++|++
T Consensus 88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEE
Confidence 99962 4555553 5678899999999999998754 57999999988888665565 4789999999999999
Q ss_pred EEC------CCeEEEeC
Q 004737 722 ASH------DKCVKIWK 732 (732)
Q Consensus 722 gs~------DG~I~IWD 732 (732)
+.. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 78889985
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=5.7e-11 Score=118.96 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=110.9
Q ss_pred EEEEcCCCCEEEEEEC----------CCcEEEEEcCC-CeEEEEecc-CCCceEEEEEcCCCCeEEEEe--CCCeEEEEe
Q 004737 455 SCHFSPDGKLLATGGH----------DKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATSS--ADRTVRVWD 520 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~----------Dg~I~VWd~~t-~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs--~Dg~I~IWD 520 (732)
.+.|+++|++|++-.. -+...||.++. ......+.- ..++|.+++|+|+++.||+.. .++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5889999988765433 13455565532 233334432 345799999999999876653 567999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 597 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~- 597 (732)
++. . .+..+ +...+..|.|+|+|+.+++++. ..|.|.+||+++.+.+....+. .++.++|+|+|+++++++.
T Consensus 90 ~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Ccc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 972 2 34444 3567889999999877775542 3478999999998888877654 5789999999999998875
Q ss_pred -----CCeEEEEECCCCeEEEE
Q 004737 598 -----ENYISILDVETQVCRLK 614 (732)
Q Consensus 598 -----dg~I~IwDl~t~~~i~~ 614 (732)
|+.++||+.. |+.+..
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cceeccccEEEEEec-CeEeEe
Confidence 6889999985 544443
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=1.8e-11 Score=141.05 Aligned_cols=267 Identities=16% Similarity=0.218 Sum_probs=184.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
-+++++..+-. +||++|. --.|.+||+..+..+..+ ..|...=.-. -.+.+++++..-+.+.+=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence 34456666654 5776654 358999999887665443 2341000000 1234555555444343332221
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-----eEEEEeCCCCEEEEEEcC
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-----~~v~~sp~g~~ll~~s~d 598 (732)
..+....+.|....+..+. ..++....+..+.+||...+.....+.+.... .-+-++++.-++++++.-
T Consensus 81 -----~~~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 -----QIIERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred -----hhhhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1112222334444444443 44556666888999999887777666554432 123345555678888889
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
+.|.+|+....+.-..+.+|++.|.++.|+.||+++++++ |.++++|++.+.+... ...-+|...+..++|+|. .
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 9999999985444446889999999999999999999999 8899999999975322 244578999999999999 7
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 678 LLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~~~~~~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++++.|-+.++|+.....+..+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999977665555677775 5799999999999999999999999996
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.6e-10 Score=125.10 Aligned_cols=187 Identities=18% Similarity=0.275 Sum_probs=152.8
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEecc---CCCceEEEEEc------C--------------CCCeEEEEeCCCeE
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 516 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~V~~l~fs------p--------------dg~~Lasgs~Dg~I 516 (732)
|-..|+|....||.++|||+..++....+.. -++..++..|. | |-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999998887766642 23445555552 1 23467888889999
Q ss_pred EEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEE
Q 004737 517 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA 594 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~ 594 (732)
.+|++..++...+.. ..|.+.|.++.++.+ -.+|++++.|+.+.+|+......++.+... ..+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999887544443 579999999999876 467789999999999999999999888864 44889999999988887
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC-----CCEEEEEe--CCeEEEEECCC
Q 004737 595 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 649 (732)
Q Consensus 595 ~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd-----g~~Lasgs--Dg~I~IWDl~t 649 (732)
++ +.|.+||+++++.+..|.+|.++|.++.|..+ |.|++++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 78999999999999999999999999999877 78888776 66788887765
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5e-09 Score=109.49 Aligned_cols=261 Identities=10% Similarity=0.119 Sum_probs=181.5
Q ss_pred CCcEEEEEcCCC--eEE-EEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCC--CceeE-EeecCCcceEEE
Q 004737 471 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP--DYSLR-TFTGHSTTVMSL 541 (732)
Q Consensus 471 Dg~I~VWd~~t~--~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~--~~~~~-~l~~h~~~V~sl 541 (732)
+.-|++|++++. +.. ..+-.+.+.++-++|+|+.++|+++-.+ |.|..|.++.. ..... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998732 221 1223466788999999999999988654 77888888753 32211 111122344889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCC-Ceee---eEEeccCC----------eeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSG----------ATQMRFQPRLGRILAAAIE-NYISILDV 606 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i---~~~~~~~~----------i~~v~~sp~g~~ll~~s~d-g~I~IwDl 606 (732)
++++++..++++....|.|.++-+.. |... ..+.+.+. +....+.|+++++++..-. ..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887778889999999965 4332 33344333 7889999999998888764 68999999
Q ss_pred CCCeEEEEEc---CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 004737 607 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 674 (732)
Q Consensus 607 ~t~~~i~~l~---~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~-~~~~~i~~~~~------~~~~I~sl~fspd 674 (732)
..+.....-. .....-+.|.|+|++++.++.. +++|.+|..... ...+.+..+.. ...+...+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2345678899999999998887 999999999874 22233333322 1345678899999
Q ss_pred CCEEEEEEcCC-eEEEEECCC--CeEE---EEccCCCCeeEEEEeCCCCEEEEEECCC-eEEEe
Q 004737 675 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 731 (732)
Q Consensus 675 g~~L~sgs~dg-~I~IwDl~t--~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG-~I~IW 731 (732)
|++|+++.... .|.+|.+.. +++. ....+......+.|++.+++|+++..|+ .|.||
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99888876533 788887653 4433 2234455588999999999999998654 56665
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.9e-10 Score=121.44 Aligned_cols=273 Identities=12% Similarity=0.150 Sum_probs=183.8
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
..-+.+|++.++.....+. ...... ++..|+.|..+.|-- ..+.|.+|++.+.+.+.. .-|...|+.+.++|.+.
T Consensus 104 ~pn~~v~~vet~~~~s~~q--~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQ--KKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPE 178 (566)
T ss_pred CCceeeeeeccceehhhee--hhhhcC-cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCC
Confidence 4556788888854322211 112222 689999988654432 246899999987544322 23677899999999632
Q ss_pred --eEEE-----EeCCCeEEEEecCCCCc--e--eEEeecCCcceEEEEEcCCCCcEEEEEe--CC---------CcEEEE
Q 004737 506 --RLAT-----SSADRTVRVWDTENPDY--S--LRTFTGHSTTVMSLDFHPSKEDLLCSCD--NN---------SEIRYW 563 (732)
Q Consensus 506 --~Las-----gs~Dg~I~IWDl~s~~~--~--~~~l~~h~~~V~sl~fspdg~~llaSgs--~D---------g~I~iW 563 (732)
.+|+ .+.-..|+||.+..... . .+.|. ...-..+.|++.|.-+|+.++ -| .+++++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLL 256 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEE
Confidence 3333 24456899998873221 1 12222 223356778887776665443 23 368899
Q ss_pred ECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---
Q 004737 564 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--- 638 (732)
Q Consensus 564 Dl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s--~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--- 638 (732)
++....+...+...++|.++.|++++..++++. .-..+.|||++. .++..+ ..++-+++-|+|.|++|+.++
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence 998667777777789999999999998776654 467999999874 444444 467778999999999999887
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEccCCCCeeEEE
Q 004737 639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLA 711 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~------dg~I~IwDl~t~~~~~~~~h~~~V~sla 711 (732)
-|.|.|||+.+. +++..+... ..+-+.|+|||.+|+++++ |+.++||++....... .........+.
T Consensus 334 L~G~mEvwDv~n~---K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~ 407 (566)
T KOG2315|consen 334 LPGDMEVWDVPNR---KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVE 407 (566)
T ss_pred CCCceEEEeccch---hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhhee
Confidence 469999999885 666666543 3456799999999999986 5689999986544331 11111466666
Q ss_pred EeC
Q 004737 712 AST 714 (732)
Q Consensus 712 ~sp 714 (732)
|-|
T Consensus 408 W~P 410 (566)
T KOG2315|consen 408 WRP 410 (566)
T ss_pred eee
Confidence 664
No 257
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=2.9e-11 Score=130.11 Aligned_cols=280 Identities=15% Similarity=0.206 Sum_probs=194.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 514 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 514 (732)
.+..+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567899999999998888888999999999999998763 34667888999999999999998888765 88
Q ss_pred eEEEEecCCCCceeEEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------CCeeEEE
Q 004737 515 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMR 584 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------~~i~~v~ 584 (732)
-|.+||.--+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+..+....++.- .-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999976544221111 112233444321 133445556688999999999988877666532 3378899
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEE-EECCCCCCceeEEEeecC
Q 004737 585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT 662 (732)
Q Consensus 585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~I-WDl~t~~~~~~i~~~~~~ 662 (732)
+.+.|++++++-.+|.|.+.|.++++.+..+...+.....++- |....|+... |.++.| |...++ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 9999999999999999999999999999888765555555543 4555565555 888888 876554 222222222
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-N------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 663 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-~------~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
..+.. -.-.-|..+++......+.+|.-.. . ..++-....+..++++.-|-+.-++.|.+.|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 22111 1112345567766666777774211 1 11122345567888888888887888888898875
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=6.3e-10 Score=123.16 Aligned_cols=273 Identities=15% Similarity=0.229 Sum_probs=193.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------eEEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 514 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 514 (732)
.....|++|+....|+|+|+.||.++|..+.+. ..-.++.+|+..|.-+.|+.+...|-|+..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345889999999999999999999999976532 12246789999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEeccCCeeEEEEeCCCCEE
Q 004737 515 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~~~i~~v~~sp~g~~l 592 (732)
.|.||-+-.+......+ ....+.|.+++|..+|.. ++....||.|.+=.++..+.-. .++ ......+.|++|...+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLk-g~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELK-GQLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcc-hheccceeecccHHHH
Confidence 99999988766533222 234567899999999754 4567778888887776433221 111 1224578899999999
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEE----EcCCCCCEEEEEEe--------CCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 593 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~-------~~i~~----l~~h~~~V~sla~s--------pdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
+.+-.+|.+.+||.... .+... +......|..++|. ||...|+++. .|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99999999999997642 12111 12223346677774 4677888888 78888876655433
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---------~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg 722 (732)
+..+. .+-.+....|+++|..|++++.+. .|.+|..- |+.+ ++......|++++|-..|-.++.+
T Consensus 252 Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 252 PVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred CeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 22222 246788899999999999998753 45555433 3333 666777889999997766555544
Q ss_pred ECCCeEEE
Q 004737 723 SHDKCVKI 730 (732)
Q Consensus 723 s~DG~I~I 730 (732)
.|+.|.+
T Consensus 327 -vdsfiyf 333 (1189)
T KOG2041|consen 327 -VDSFIYF 333 (1189)
T ss_pred -ecceEEE
Confidence 4565553
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=8.3e-10 Score=119.72 Aligned_cols=272 Identities=13% Similarity=0.184 Sum_probs=181.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----------CcEEEEEcCCCeEEEEeccC--CCceE-EEEEcCCCCeEEEEeCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEH--TQWIT-DVRFSPSLSRLATSSADR 514 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~D-----------g~I~VWd~~t~~~~~~l~~h--~~~V~-~l~fspdg~~Lasgs~Dg 514 (732)
|.+ |.-+.|||..+||+|-+.. ..++|||+.+|...+.+... ...++ -+.||.|++|+|.-..|
T Consensus 249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 544 8889999999999997642 57899999999998887652 22232 46899999999988764
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEeccC-CeeEEEEeCC
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR 588 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~ 588 (732)
+|.||+..+-. .+..-.-.-..|....|+|.+ .+||--.. -..+.+..+.++..+++..... .-..+.|...
T Consensus 327 sisIyEtpsf~-lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 327 SISIYETPSFM-LLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS 404 (698)
T ss_pred eEEEEecCcee-eecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC
Confidence 79999877522 111111123568888999985 45443221 1346666666666665554322 2334677777
Q ss_pred CCEEEEEEc-------C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECC-CCCCc
Q 004737 589 LGRILAAAI-------E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKG 653 (732)
Q Consensus 589 g~~ll~~s~-------d---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~-t~~~~ 653 (732)
|.+|.+-.. . ..+.|+.++........-.-...|...+|.|.|..+++-+ ..++.+|.+. +....
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence 777655332 1 1355666665433222223567889999999998877765 3489999988 44444
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 727 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~---dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~ 727 (732)
..+..+.. ...+.+.|+|.|.++++++- .|.+.+||+.-..+. ....| ...+.+.|.|.|+|++|++.-..
T Consensus 485 ~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 485 SLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence 45555543 56788999999999887754 568999999853332 33334 35688999999999999986443
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=3.8e-08 Score=106.40 Aligned_cols=259 Identities=10% Similarity=0.096 Sum_probs=157.3
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCCeEEEEeccCCC---
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ--- 493 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h~~--- 493 (732)
..+.+.|..++.....+ ..-..+-. + ++|||+.|+++.. +..|.|||+.+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i---~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT---DGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEE---EccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 34455565565443333 32222222 4 9999998877655 78999999999999988864222
Q ss_pred ----ceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 494 ----WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 494 ----~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
....++++|||++|++... +..|.|+|+.+++. +..+.- .+...-...+++ .+++ -| .||......+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~ 176 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGT 176 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecC
Confidence 3347899999999998763 68999999998774 443332 111111222221 1111 12 234333332221
Q ss_pred -Cee-eeE---Eecc-CCe-eEEEEeC-CCCEEEEEEcCCeEEEEECCCC-----eEEEEEcC-------CCCCEEEEEE
Q 004737 568 -GSC-AGV---FKCQ-SGA-TQMRFQP-RLGRILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCW 627 (732)
Q Consensus 568 -~~~-i~~---~~~~-~~i-~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~-------h~~~V~sla~ 627 (732)
++. ... +... ..+ ..-.|.+ ++.++++... |.|++.|+... .....+.. ..+.+.-+++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 111 111 1110 000 0114466 5555555554 99999996443 22222211 2334445999
Q ss_pred eCCCCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCC
Q 004737 628 NTSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTE 694 (732)
Q Consensus 628 spdg~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~t 694 (732)
+++++.+++.. .+.|.++|..+. +.+..+.. +..+..++++||++ +|++.. .++.|.++|..+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99998888742 258999999887 56665553 66899999999999 777666 467899999999
Q ss_pred CeEEEE
Q 004737 695 NKTLTL 700 (732)
Q Consensus 695 ~~~~~~ 700 (732)
++.+..
T Consensus 332 ~k~i~~ 337 (352)
T TIGR02658 332 GKELSS 337 (352)
T ss_pred CeEEee
Confidence 988833
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=1.2e-08 Score=112.90 Aligned_cols=252 Identities=11% Similarity=0.037 Sum_probs=160.7
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEE-EEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce-
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 538 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~-l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V- 538 (732)
++..+++++.++.|..||..+|+.+....... .+.+ ... .+..++.++.++.|..||.++++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 46688888899999999999999887654332 2222 112 345677788899999999998774 33222211111
Q ss_pred ----EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-----------e-eEEEEeCCCCEEEEEEcCCeEE
Q 004737 539 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 539 ----~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-----------i-~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.+..+. + ..++.+..++.+..+|+++++.+........ + ....+ .++.+++++.+|.++
T Consensus 180 ~~~~~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~ 254 (377)
T TIGR03300 180 LRGSASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA 254 (377)
T ss_pred ecCCCCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence 111222 2 2455777789999999999987765432111 0 01111 356888889999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEE
Q 004737 603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~s 680 (732)
.||.++++.+..... . ....... ++..+++++ ||.|..+|..+++ .+...... .....+... .+..+++
T Consensus 255 a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~ 325 (377)
T TIGR03300 255 ALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVV 325 (377)
T ss_pred EEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEE
Confidence 999999987776542 1 1122222 345566556 8999999998873 33333211 111222222 3567999
Q ss_pred EEcCCeEEEEECCCCeEE-EEccCCCCe-eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 681 IGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 681 gs~dg~I~IwDl~t~~~~-~~~~h~~~V-~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++.+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|..|.
T Consensus 326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 999999999999999988 554454333 333333 3 4588899999998763
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1e-10 Score=129.81 Aligned_cols=278 Identities=18% Similarity=0.291 Sum_probs=195.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEecc-CCCceEEEEEcCC--CCeEEEEeCCCeEEEEecCCC--
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP-- 524 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~-h~~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~-- 524 (732)
+.+.++.++|.|+-+|.++.-| +.|-|+.. +....-+.. ..-.|-++.|++. -.+-++......-.||++...
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 4577899999999999998765 44555553 333333321 2234777889874 345555555666788987643
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-eccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
......+.+|...|+.+.|+|....++++|+.|-.|..||++.... +..+ ..+.....+.|+.....+++.+..+.|.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 2334567899999999999999999999999999999999987543 3333 2456788899999888999999999999
Q ss_pred EEECCCC-eEEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 603 ILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 603 IwDl~t~-~~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
+||++.+ .++..+++|...|+.+.|..- ...+.+++ |++|+.||...... .-........+|+.-.|.|-|.-.+
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCceeE
Confidence 9999986 678889999999999998763 22344455 99999999976532 1112223456777777777665433
Q ss_pred EEEcCC--eEEEE---------ECCCCe-EE-EEccCCCCeeEEEEeCCC----------CEEEEEECCCeEEEe
Q 004737 680 VIGCYE--TLELW---------NMTENK-TL-TLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIW 731 (732)
Q Consensus 680 sgs~dg--~I~Iw---------Dl~t~~-~~-~~~~h~~~V~sla~spdg----------~~LaSgs~DG~I~IW 731 (732)
+--..| .+.++ +..++. .+ ++.+|...|...-|-..+ -.|+|-+.|..+++|
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 322222 34444 333332 22 788999988777664322 279999999999999
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=4.5e-09 Score=113.43 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=188.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--------------
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 514 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-------------- 514 (732)
-.-++..++|||.|.+|++... .-|.+|+...+..+..+. |. .|..+.|+|+++||.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4557889999999999998765 468999998887666664 44 499999999999999866533
Q ss_pred -eEEEEecCCCCceeEEeecCCcc--eE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEe--ccCCeeEEEEeC
Q 004737 515 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQP 587 (732)
Q Consensus 515 -~I~IWDl~s~~~~~~~l~~h~~~--V~-sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-~~~~--~~~~i~~v~~sp 587 (732)
.+.|||+.++. .+..+.....+ .+ -+.|+-++.+.+-. ....++|+++ ++... ..+. ...++....|+|
T Consensus 108 n~~~vwd~~sg~-iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGM-IVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCce-eEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 49999999876 46666665555 55 67788775444333 2456999997 33221 1111 135688889998
Q ss_pred CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe------------CCeEEEEECC
Q 004737 588 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 648 (732)
Q Consensus 588 ~g~~--ll~~-----s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs------------Dg~I~IWDl~ 648 (732)
.++. |++- ...+.+++|.+..+..+....-....-..+.|.+.|++|++-- +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 7433 3332 2367899999987766554332233335688999998876532 2367888887
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC-
Q 004737 649 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 725 (732)
Q Consensus 649 t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D- 725 (732)
.. .+.......++|...+|.|.++.+++++ .+..+.++|++.+ +.+......=..+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 2222224578999999999998887776 3458999999887 4444555566778889999988887765
Q ss_pred --CeEEEeC
Q 004737 726 --KCVKIWK 732 (732)
Q Consensus 726 --G~I~IWD 732 (732)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5677775
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.1e-08 Score=112.15 Aligned_cols=227 Identities=11% Similarity=0.061 Sum_probs=149.6
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe-EEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg 547 (732)
..|.+-|.+.... ..+.... .+....|+|||+. ++..+.+ ..|.++|+.++.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 3566656554433 3333233 7888999999984 6654443 4688899987653 3333455666778899999
Q ss_pred CcEEEEEeCC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCE
Q 004737 548 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 622 (732)
Q Consensus 548 ~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V 622 (732)
..++++.+.+ ..|+++|+.+++...............|+|+|+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888877655 46888898877755443333334567899999988887753 2 688899988766443321 111
Q ss_pred EEEEEeCCCCEEEEEe-C-------C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 004737 623 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 689 (732)
Q Consensus 623 ~sla~spdg~~Lasgs-D-------g--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~I 689 (732)
...|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999988776 2 2 678888877632 222222 2233578999999888877554 5788
Q ss_pred EECCCCeEEEEccCCCCeeEE
Q 004737 690 WNMTENKTLTLSAHDKLVSSL 710 (732)
Q Consensus 690 wDl~t~~~~~~~~h~~~V~sl 710 (732)
+++.......+....+.|...
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred EecCCCeeEEeecCCCccCCC
Confidence 888777666555444444443
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3e-09 Score=116.78 Aligned_cols=188 Identities=19% Similarity=0.303 Sum_probs=150.2
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeec---CCcceEEEEEc------C-------------CCCcEEEEEeCCCc
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFH------P-------------SKEDLLCSCDNNSE 559 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~---h~~~V~sl~fs------p-------------dg~~llaSgs~Dg~ 559 (732)
|...|||....||.++|||...++. ...|.. -.+..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4567899999999999999987663 222221 22344444442 1 23457778888999
Q ss_pred EEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737 560 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 636 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las 636 (732)
|.+|++..++....+. +.+.+.++.++.+-..|.+++.|+.+..|+......++.+......+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988887 4566889999999899999999999999999999999999999999999999999998887
Q ss_pred EeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 004737 637 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 694 (732)
Q Consensus 637 gsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd-----g~~L~sgs~-dg~I~IwDl~t 694 (732)
++ +.|++||+++. +.+..+.+|.++|.++.|.-. |.+++++.. +..+.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 65 67999999988 899999999999999999877 666665543 44566775543
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=6e-10 Score=112.86 Aligned_cols=198 Identities=20% Similarity=0.251 Sum_probs=152.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCc-ee
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY-SL 528 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~-~~ 528 (732)
-.++.|++-+..++++..+|.+.+-+....... ..++.|.-+++...|+. +.+++++|+.|+.+..||++.++. ..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457889998999999999999996665554444 47899999999999976 457899999999999999995443 33
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEeccCCeeEEEEeCCCC-EEEEEEcCCeEEEEEC
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILDV 606 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~~~~~~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl 606 (732)
.....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|... .+++++..+..+|.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 34677999999999999888999999999999999998 477777777779999999999643 3455555666677776
Q ss_pred CCC--e---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEE-EEECCCC
Q 004737 607 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 650 (732)
Q Consensus 607 ~t~--~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~-IWDl~t~ 650 (732)
..+ + .....+.|.+-+..-.|.....+|++|+ |..++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 654 2 3344556777777777755567889888 77755 7765443
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-09 Score=111.42 Aligned_cols=239 Identities=17% Similarity=0.319 Sum_probs=164.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----EEEEeccCC------------CceEEEEEcCCC--CeEEEE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 510 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~------------~~V~~l~fspdg--~~Lasg 510 (732)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999755322 222344443 347888887653 357777
Q ss_pred eCCCeEEEEecCCCC-----------------------------------------ceeEEe-ecCCcceEEEEEcCCCC
Q 004737 511 SADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 511 s~Dg~I~IWDl~s~~-----------------------------------------~~~~~l-~~h~~~V~sl~fspdg~ 548 (732)
+.|++|++|.+.... .+.+.+ ..|...|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 799999999876431 011112 35777889999998866
Q ss_pred cEEEEEeCCCcEEEEECCCCe-eeeEEe--c------cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------E
Q 004737 549 DLLCSCDNNSEIRYWSINNGS-CAGVFK--C------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------R 612 (732)
Q Consensus 549 ~llaSgs~Dg~I~iWDl~t~~-~i~~~~--~------~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~------i 612 (732)
.++ ++ +|-.|.+|+++-.. +..... . ..-|++..|+|.. ..+...+..|.|++-|++.... +
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 655 44 47889999986432 222111 1 1237788899864 4566778889999999983211 1
Q ss_pred E----------EEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC------------Cc---eE
Q 004737 613 L----------KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NK---FH 667 (732)
Q Consensus 613 ~----------~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~------------~~---I~ 667 (732)
. -+.+-...|..+.|+++|+||++-+--+|+|||++..+ .++.++..|. .. -.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 11122346788999999999998888899999998765 4555554331 12 24
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
.+.|+-|.+.+++|+.....-+|-+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEecCCcccccccccccceeeecc
Confidence 5788888888998888877777753
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=5.8e-08 Score=117.86 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=186.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEE----EcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VW----d~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
...+.|.++.|-+|...++.+..+|.|.++ +..+... .....-...|.+++||||+..|+.++.+++|.+..-+=
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 5544322 22223456799999999999999999999888764320
Q ss_pred -------------CC-cee--------E-------------------------EeecCCcceEEEEEcCCCCcEEEEEe-
Q 004737 524 -------------PD-YSL--------R-------------------------TFTGHSTTVMSLDFHPSKEDLLCSCD- 555 (732)
Q Consensus 524 -------------~~-~~~--------~-------------------------~l~~h~~~V~sl~fspdg~~llaSgs- 555 (732)
+. ..+ . .+. +.+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 00 000 0 011 3335567899999877665553
Q ss_pred -CC---CcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCC---eEEEEEcCCCCCEEE
Q 004737 556 -NN---SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQ---VCRLKLQGHKNQVHS 624 (732)
Q Consensus 556 -~D---g~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~---~~i~~l~~h~~~V~s 624 (732)
.. ..|+||+-+ |....+.+. .+--.+++|.|.|+.|++.-. ...|.+|.-+.. +....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 22 579999977 655444332 233567899999998888765 346777775532 222222235668999
Q ss_pred EEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC---
Q 004737 625 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN--- 695 (732)
Q Consensus 625 la~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl----~t~--- 695 (732)
++|++|+.+|+....+.|.+|-..+-.- ....++... ...+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 9999999999998866699999877521 222233322 233455899996543 555555565544332 211
Q ss_pred -------------eEEE----------------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 696 -------------KTLT----------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 696 -------------~~~~----------------~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..+. .......|.+++|++++..+++-..||.|.+|+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 1110 112356799999999998899999999998874
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.15 E-value=4.3e-08 Score=104.87 Aligned_cols=282 Identities=13% Similarity=0.079 Sum_probs=190.0
Q ss_pred eeeeeecCCC-ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-CCeEEEEeccCCC--ceEEEEEcCC
Q 004737 428 VGRSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQ--WITDVRFSPS 503 (732)
Q Consensus 428 ~~r~wd~~~g-~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~--~V~~l~fspd 503 (732)
...+|-...+ ..|+.+-.+.+|- +|-.+-. ++..+....||.=.||.++ .|+-+ +.|+. .-.+=..+.|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~v---S~PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsD 277 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNV---SSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSD 277 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCc---CCceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCC
Confidence 4567776554 4788877777774 3333322 2333334556655555443 22222 22332 1223344668
Q ss_pred CCeEEEEeCCCeEEEEecCCCCceeEEee-----c-----CCcceEEEE-EcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737 504 LSRLATSSADRTVRVWDTENPDYSLRTFT-----G-----HSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAG 572 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~-----~-----h~~~V~sl~-fspdg~~llaSgs~Dg~I~iWDl~t~~~i~ 572 (732)
|+.++.. ..|.|.+||.++.......+. . ...+..-+. |++....+++..+ .|...+.+...+-.+.
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 8887765 567899999987653221111 0 001111121 4444455666666 5778888876555443
Q ss_pred EEeccCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737 573 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 573 ~~~~~~~i~~v~~sp~g~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
. ....+|.-..+..+...++.|..|| .|-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.++
T Consensus 356 v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 3 3446688888888888899999998 89999999887554 445678999999999999999988 458999999987
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg----~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
. ....-....+-|+.+.|||++++++.+--+| .|++||+.+++........+.=.+-+|.||+++|+--+
T Consensus 434 n---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 N---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred C---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3 3333344567799999999999999998877 79999999999986666666667789999999887654
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=5.7e-08 Score=107.43 Aligned_cols=255 Identities=13% Similarity=0.068 Sum_probs=160.4
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 540 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s 540 (732)
.+..+++++.++.|..+|..+|+.+............+.. ++..+++++.++.+..||..+++...+ ... ...+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-~~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR-AKL-SSEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee-ecc-Cceeec
Confidence 3568888888999999999999988766544332222332 467788888999999999988875332 221 122222
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee------EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737 541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLK 614 (732)
Q Consensus 541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~------~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~ 614 (732)
.-.. .+.. ++.+..++.|+.||.++++.+..+....... ...+. ++.++++..++.+..+|.++++.+..
T Consensus 140 ~p~v-~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 140 PPLV-ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred CCEE-ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 1111 1233 4456678999999999999887776543321 11222 35778888889999999999987654
Q ss_pred EcCCCC----C---EEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737 615 LQGHKN----Q---VHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 615 l~~h~~----~---V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d 684 (732)
...... . +..+.-+| .+..+++++ ++.++.||..+++ .+..... . ...... ..+..+++++.+
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~-~-~~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR---VLWKRDA-S-SYQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc---EEEeecc-C-CccCce--EeCCEEEEECCC
Confidence 331100 0 00111011 234555555 9999999998873 3333321 1 111122 245678888999
Q ss_pred CeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 685 ETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 685 g~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.|+.+|..+++.+ ..... ......... .+..|++++.||.|++||
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 99999999999877 32121 122223233 366888999999999875
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=5.1e-08 Score=120.36 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=160.7
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEecc-C-------------CCceEEEEEcCCCCeEEEEeC-CCeEE
Q 004737 454 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR 517 (732)
Q Consensus 454 ~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~I~ 517 (732)
..++++++ +.++++-..++.|++||... ..+..+.+ . -.....|+|.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 56667777788999999764 44444322 1 123578999998887666554 57899
Q ss_pred EEecCCCCceeEEeecC-----------------CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----
Q 004737 518 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 575 (732)
Q Consensus 518 IWDl~s~~~~~~~l~~h-----------------~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----- 575 (732)
++|+.++. +.++.+- -.....++|+|++..++++...++.|++||..++.......
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987643 3333211 11346899999767788788888999999998775432110
Q ss_pred ----------ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-------------C--------CCCEE
Q 004737 576 ----------CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 623 (732)
Q Consensus 576 ----------~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-------------h--------~~~V~ 623 (732)
.-.....++++|+++.++++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0123456999999986666554 68999999987653221100 0 11246
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE----------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE----------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 624 sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~----------~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
+++|+++|.++++.. ++.|++||..++........ ....-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 899999998777666 88999999987521111100 0011135678999999987777777889999999
Q ss_pred CCCeE
Q 004737 693 TENKT 697 (732)
Q Consensus 693 ~t~~~ 697 (732)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88765
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=4.5e-08 Score=120.81 Aligned_cols=232 Identities=11% Similarity=0.118 Sum_probs=156.4
Q ss_pred EEEEEcCC-CCeEEEEeCCCeEEEEecCCCCceeEEeec--C------------CcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 496 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 496 ~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~--h------------~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
..++++++ +.++++-+.++.|++||... .. +..+.+ . -.....|++.++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788874 56677777788999999864 32 222221 1 12357899998876666555556789
Q ss_pred EEEECCCCeeeeEEec------------------cCCeeEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCC---
Q 004737 561 RYWSINNGSCAGVFKC------------------QSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGH--- 618 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~------------------~~~i~~v~~sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h--- 618 (732)
+++|+.++... ++.. -.....++++|+++.++ +...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 99999876533 2211 11246799999555554 45567899999998775432 1110
Q ss_pred ------------CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEE-----------Eeec--------CCCc
Q 004737 619 ------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNK 665 (732)
Q Consensus 619 ------------~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~-----------~~~~--------~~~~ 665 (732)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+.. ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccC
Confidence 12356799999998666665 77999999987532 1111 0000 0112
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC--------------CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 666 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h--------------~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
...++++++|..+++-..++.|++||..++...++.+. -.....|+++++|+++++-+.++.|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 45889999998777777788999999998877644332 1357889999999988888899999999
Q ss_pred C
Q 004737 732 K 732 (732)
Q Consensus 732 D 732 (732)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=7.1e-09 Score=105.19 Aligned_cols=242 Identities=12% Similarity=0.097 Sum_probs=163.8
Q ss_pred CCCeEEEEEcC---CCC-EEEEEECCCcEEEEEcCCCeEEEEeccCC------CceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 450 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 450 ~~~V~~lafSp---dg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+..+..+.|+. +|. .++-+..+|.|.+|.....+....+++-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34466666654 455 46667778999999876555544444321 124578899989999999999999865
Q ss_pred ecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeE--EeccCCeeEEEEeCC-CCEEEE
Q 004737 520 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQPR-LGRILA 594 (732)
Q Consensus 520 Dl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~--~~~~~~i~~v~~sp~-g~~ll~ 594 (732)
+...... .+..++.|..+++...|+....+++++|++|+.+..||++ .++++.. ..+..+|.++.-+|. ..+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 5544332 2347889999999999998888999999999999999999 3444433 235677888887764 567899
Q ss_pred EEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCc--eeEEEeecCCCceEEE
Q 004737 595 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 669 (732)
Q Consensus 595 ~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~--~~i~~~~~~~~~I~sl 669 (732)
|+.|..|++||.+. ++++..-. -.+.|+.++++|.- ++|++|--.-.+|.+....... ......+.|.+-.+.-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999995 56655443 45789999999953 3455555444667766654321 1333444555555555
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEEC
Q 004737 670 VFHPTFPSLLVIGC-YETLE-LWNM 692 (732)
Q Consensus 670 ~fspdg~~L~sgs~-dg~I~-IwDl 692 (732)
.|.....+|++++. |+.++ +|-.
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccccceeeeeeccccceeeeeee
Confidence 66444455666543 33433 5543
No 274
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=4e-09 Score=122.11 Aligned_cols=197 Identities=14% Similarity=0.210 Sum_probs=156.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc----eEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
-.+.|....+.-+.+.++.+..++.+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+....
T Consensus 86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 3445555677778889999999999999999887776665433221 112334666778999999999999999855
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
+.+. .+.+|.+.|..+.|+.+| .+++++++|..+++|++++.+... .|.+...+..++|.|. .+++++.|.+.+
T Consensus 166 n~p~-~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr 241 (967)
T KOG0974|consen 166 NKPI-RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR 241 (967)
T ss_pred CCcc-eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE
Confidence 5433 689999999999999986 566799999999999999987765 4556778999999997 999999999999
Q ss_pred EEECCCCeEEEEEcCCC-CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737 603 ILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 603 IwDl~t~~~i~~l~~h~-~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
+|+.+... ...+.+|. ..|..++..++...++++. |+.+++||+...
T Consensus 242 vW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 242 VWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99766443 33666664 4789999988888888888 999999998764
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.9e-08 Score=107.98 Aligned_cols=271 Identities=16% Similarity=0.200 Sum_probs=183.9
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC-----------CCeEEEEec
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDT 521 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~I~IWDl 521 (732)
=+-+.|||-|.||++--. .-|.+|--++...++.+. |.+ |.-+.|||..+||+|=+. ...|+|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 456899999999999865 458899888877777774 664 899999999999998653 257999999
Q ss_pred CCCCceeEEeec--CCcce-EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEc
Q 004737 522 ENPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 522 ~s~~~~~~~l~~--h~~~V-~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~ 597 (732)
.++.. .+.+.. ....+ .-+.|+.|++++.... ...|.||+..+..++..-. ...+|....|+|.+..|+.-+.
T Consensus 290 ~tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred cccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 99874 454443 22223 3457888865544333 3579999887644332111 2367889999999877766443
Q ss_pred C-----CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----------eEEEEECCCCCCceeEEEeec
Q 004737 598 E-----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSC 661 (732)
Q Consensus 598 d-----g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg-----------~I~IWDl~t~~~~~~i~~~~~ 661 (732)
. ..+.+..+.++..+++..-+.-.=..+.|-.+|.||+.--|. .+.|+.++....+.... .
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v---e 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV---E 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee---e
Confidence 2 367788888877776655444444457788889998864321 35566665543222122 2
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCC-CeEEEE--ccCCCCeeEEEEeCCCCEEEEEE---CCCeEEEeC
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLTL--SAHDKLVSSLAASTVNGMVASAS---HDKCVKIWK 732 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t-~~~~~~--~~h~~~V~sla~spdg~~LaSgs---~DG~I~IWD 732 (732)
....|...+|-|.|..+++.+.+. ++.+|.+++ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 356788999999998888776654 789998873 222211 11225578899999999888775 356666654
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=3.7e-09 Score=109.06 Aligned_cols=228 Identities=18% Similarity=0.248 Sum_probs=148.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----eeEEeecC------------CcceEEEEEcCCCC-cEEEEE
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGH------------STTVMSLDFHPSKE-DLLCSC 554 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~----~~~~l~~h------------~~~V~sl~fspdg~-~llaSg 554 (732)
.+-|.+|.|...|.+||||..+|.|.+|.-+.... ....+..| ...|..+.|.++++ ..+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45689999999999999999999999997553321 12233333 24688899987653 344456
Q ss_pred eCCCcEEEEECCCCeeee---EEecc---CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEE
Q 004737 555 DNNSEIRYWSINNGSCAG---VFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCW 627 (732)
Q Consensus 555 s~Dg~I~iWDl~t~~~i~---~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l-~~h~~~V~sla~ 627 (732)
..|.+|++|.+....... .+... ..++.+.. .+.+..+-.+. ..+.+.+ ..|...|++|.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceee------eeeeeeccccceeEeeeeee
Confidence 679999999986543222 00000 11222111 01111111111 1223333 348889999999
Q ss_pred eCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE---
Q 004737 628 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL--- 698 (732)
Q Consensus 628 spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~-----~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~--- 698 (732)
+.|...++++.|=.|.+|++.-....--+..++.+. .-|++..|+|.. ..++..++.|+|++-|++...+.
T Consensus 173 NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 173 NSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 999999999999999999997654333344444433 457888999976 56777888999999999843221
Q ss_pred ----E----------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 699 ----T----------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 699 ----~----------~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
. +..--..|..+.|+++|+|+++-+. -+|+|||
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 1 1112246899999999999997643 5799997
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=6.7e-08 Score=108.18 Aligned_cols=201 Identities=10% Similarity=0.046 Sum_probs=135.5
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc-EEEEEeC--CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCC
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 590 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~-llaSgs~--Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~ 590 (732)
..|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+|+++
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 356665665432 33333333 7889999999986 4433332 3579999999887766665555567789999999
Q ss_pred EEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeC--C--eEEEEECCCCCCceeEEEeecCC
Q 004737 591 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD--E--LVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 591 ~ll~~s~---dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsD--g--~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
.++.... +..|+++|+.++... .+..+........|+|||+.|+..++ + .|+++|+.++...... . ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~--~g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--F--HG 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--c--CC
Confidence 8876544 357999999887643 34434433445689999998887773 3 7888898876431111 1 11
Q ss_pred CceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 664 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~d---------g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
.. ...|+|+|++|+..... ..|++.|+.++....+... .......|+|||+.|+....+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11 24899999999888754 2688999988877655543 233468999999977766643
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=1.2e-07 Score=101.52 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=133.7
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC-eEEEEecCCCCceeEEeecCCcceE
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM 539 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-~I~IWDl~s~~~~~~~l~~h~~~V~ 539 (732)
+|.+++..+. |.+.|.+...+-.+.. +|...|.-..+..+++-++.|..|| .+-|||.+++. .+.+...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence 6888888875 7777777665544433 5777799999998888999999999 99999999865 566666778999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEE
Q 004737 540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK 614 (732)
Q Consensus 540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t~~~i~~ 614 (732)
++..+++|+.++ .+.....|.+.|+.++.....-+. .+-|+.+.|+|++.+++.+--+| .|++||+..++....
T Consensus 406 av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 406 AVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 999999986555 666678999999999886654443 34489999999999999888776 699999998876554
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEe
Q 004737 615 LQGHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 615 l~~h~~~V~sla~spdg~~Lasgs 638 (732)
-. ....=.+-+|.||+++|..-+
T Consensus 485 TT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 485 TT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cC-CcccccCcccCCCCcEEEEEe
Confidence 33 344456678999999877654
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=7.4e-10 Score=133.01 Aligned_cols=189 Identities=15% Similarity=0.301 Sum_probs=155.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 45566778899989988999999999999999999888877764 2347899999999999999999999999999983
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCC---eeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs---~Dg~I~iWDl~t~---~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
.+......|......+.|-. .++++++ +++.+.+||.... .++. .-+.++++++++.|....|++|+.+
T Consensus 2283 -k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence 45778888999999998884 4555553 5789999996432 2333 4466789999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
|.|++||++..+.+..+.. ++ ...+|++++ .|.|+||++...
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999998877666653 44 567888888 999999999876
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=7.5e-08 Score=108.23 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=154.3
Q ss_pred eEEEEEecCCCCCeEEEEEcCC------C------CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC---CC
Q 004737 440 FTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SL 504 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpd------g------~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp---dg 504 (732)
+..+..+..|...|+.+.|.|- + -+||++...|.|.|||...+..+..+..|.++|.+++|-+ +.
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 4567889999999999999873 1 2478888889999999999999999999999999999976 34
Q ss_pred -CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeEEec
Q 004737 505 -SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKC 576 (732)
Q Consensus 505 -~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~ 576 (732)
..|+.-....+|.+|+.+++.+ +..+........|+.+.|.+..-++.-+..|.|.+-+.-. ++....-..
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 4666667788999999999885 4444444456778999997766666666677777766421 111111110
Q ss_pred c-C-----------------C--------eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737 577 Q-S-----------------G--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 577 ~-~-----------------~--------i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd 630 (732)
+ . + ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|+
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD 283 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence 0 0 0 123577888888888889999999999988888877766677777788776
Q ss_pred C--CEEEEEe-CCeEEEEECCC
Q 004737 631 G--EYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 631 g--~~Lasgs-Dg~I~IWDl~t 649 (732)
+ ..|++.. ||.+.+|-.+.
T Consensus 284 ~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCcceEEEEecCCeEEEEEeec
Confidence 5 4666666 99888886554
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=7.8e-07 Score=92.37 Aligned_cols=217 Identities=7% Similarity=0.022 Sum_probs=144.7
Q ss_pred EEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737 496 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 573 (732)
Q Consensus 496 ~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs-pdg~~llaSgs~Dg~I~iWDl~t~~~i~~ 573 (732)
.+++|.+ ++.++++-...+.|..|+..++.. ..+.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3678988 666677766789999999987653 2222222 6777777 55 4555 4443 4466679998876655
Q ss_pred Eecc------CCeeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737 574 FKCQ------SGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 574 ~~~~------~~i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs- 638 (732)
.... .....+++.++|+.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 5531 236789999998866665543 568888888 55444333 345678999999999887665
Q ss_pred -CCeEEEEECCCCCC-c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEE
Q 004737 639 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 712 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~-~---~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~ 712 (732)
.+.|..|++..... . ..+..+.......-.+++..+|+.+++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 77899999864332 1 2222333333357889999999977777778899999988 6666 34434468999999
Q ss_pred e-CCCCEEEEE
Q 004737 713 S-TVNGMVASA 722 (732)
Q Consensus 713 s-pdg~~LaSg 722 (732)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 5 565655544
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=131.49 Aligned_cols=210 Identities=16% Similarity=0.235 Sum_probs=166.3
Q ss_pred CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCee
Q 004737 504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT 581 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~ 581 (732)
+..+..+..++...-|..+... ..++.+-..|.++.-+|....++ +|+.||.|++|....+..+..++. ...++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3445555556666666655433 33444556788998899865555 999999999999998888877764 35588
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEE
Q 004737 582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~ 657 (732)
.+.|+..|+.+.++..||.+.+|.+. .++....+.|......+.|-. ..+++++ ++.+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 89999999999999999999999988 667777888998888888875 5566544 4589999987655545666
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+|...++++++.|....|++|+.+|.|++||++..+++ ++.. ++ ...++++++..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999887765 2222 44 567999999999999996
No 283
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=7e-09 Score=107.17 Aligned_cols=245 Identities=13% Similarity=0.206 Sum_probs=174.2
Q ss_pred eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
.....+++|.+.|++...-|...-+++.+.|.+++||--.+ +++-...+..-..+++++.+.++. ..|+.+-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEE
Confidence 34566789999999999999888899999999999996543 332222333345788999999884 5666888889998
Q ss_pred EEECCC----CeeeeEE-eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737 562 YWSINN----GSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 636 (732)
Q Consensus 562 iWDl~t----~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las 636 (732)
-+.+.. ....+.. .+...+..+.|+....++++.+.|..+.---.+.+..+..+. .....+++.+.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEe
Confidence 887642 2222222 245668888888888888888888776544444443221111 0001111111111 3344
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEe
Q 004737 637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAS 713 (732)
Q Consensus 637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~s 713 (732)
|. .|.|.+-.+.... ...+..+.+|.+.+.++.|.+....++++.+|..|.+||+-.++-. .+.+|...|..+...
T Consensus 171 Gd~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 44 5555555544322 2678889999999999999999999999999999999999765544 778999999999998
Q ss_pred CCCCEEEEEECCCeEEEeC
Q 004737 714 TVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 714 pdg~~LaSgs~DG~I~IWD 732 (732)
+--+.+++++.||.|.+||
T Consensus 250 ~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhheeeeeccCCCeEEEEe
Confidence 8889999999999999996
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=5.7e-08 Score=97.50 Aligned_cols=250 Identities=9% Similarity=0.009 Sum_probs=166.7
Q ss_pred CCCcEEEEEcCCCe-EEEEeccCCCceEEEEEcC-----CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEE
Q 004737 470 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 543 (732)
Q Consensus 470 ~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~f 543 (732)
....|-+|++.+.. .+..+. +.+.|-| ...+||.|+.-|...+|...+..........|...|+-+.=
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34567777765432 111111 3344544 44689999999999999999776555555555554443322
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-e-EEE-EEcCCC
Q 004737 544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-V-CRL-KLQGHK 619 (732)
Q Consensus 544 spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~-~i~-~l~~h~ 619 (732)
..+...-+..++.|.++++++++-+......... -....+.+++++.+.++++....|..|.+... + .+. ......
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 2222333446778889999888754433332221 23788999999999999999999999988754 2 222 233344
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 004737 620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTE 694 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~--~i~~~~~~~~~I~sl~fspdg~--~L~sgs~dg~I~IwDl~t 694 (732)
..-.+..|+.....++++. ||++.|||++....+. .-.....|.+.+..|.|++.|. .|+..-.-+.+.+.|+++
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 5567889999999999999 9999999999764322 2223445789999999998773 456666667899999998
Q ss_pred CeEE--------EEccCCC-CeeEEEEeCCCCEEEEEECC
Q 004737 695 NKTL--------TLSAHDK-LVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 695 ~~~~--------~~~~h~~-~V~sla~spdg~~LaSgs~D 725 (732)
++-. ....|.. .|..-.|+.++..+.+.+++
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 8644 1223433 48888888877766655543
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=2.2e-06 Score=89.04 Aligned_cols=217 Identities=14% Similarity=0.171 Sum_probs=145.7
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc-CCCCeEEEEeCCCeEEEEecCCCCceeE-Ee
Q 004737 455 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLR-TF 531 (732)
Q Consensus 455 ~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l 531 (732)
+++|.+ ++.++++--..+.|..|+..+++....- ... ...+++. +++ .|+.+..++ +.++|..+++.... ..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 6777777767899999999987665422 222 6677777 564 555555554 56669887653222 11
Q ss_pred e--c-CCcceEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC
Q 004737 532 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 599 (732)
Q Consensus 532 ~--~-h~~~V~sl~fspdg~~llaSgs~D--------g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg 599 (732)
. . .....+.+++.++|+ +.++.... |.|..++.. ++.......-.....++|+|+++.|+++.. .+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 345678999999986 55454432 568888887 666666655566889999999998876654 68
Q ss_pred eEEEEECCC--C-----eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 600 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 600 ~I~IwDl~t--~-----~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
.|..||+.. . +....+....+..-.+++..+|+++++.. .+.|.++|.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999863 2 11222333333588999999999877766 8899999987 4 566666655568999999
Q ss_pred e-CCCCEEEEEE
Q 004737 672 H-PTFPSLLVIG 682 (732)
Q Consensus 672 s-pdg~~L~sgs 682 (732)
. ++.+.|++.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6767777665
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.7e-08 Score=109.16 Aligned_cols=238 Identities=14% Similarity=0.192 Sum_probs=173.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC------------CeEEEEeCCCeEEE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRV 518 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg------------~~Lasgs~Dg~I~I 518 (732)
..-.++.|+|.| +||.|+. ..|.|-|..+.+.+..++.|...|+.|+|.|.. -+||++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 336778999888 7888775 589999999999999999999999999998731 25777778899999
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCC---CCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCC-CCEEE
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR-LGRIL 593 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspd---g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~-g~~ll 593 (732)
||+.... .+..+..|.+++..++|-+. .++++++-....+|.+|+..+|+....+..... ..|+.+.|- ..++.
T Consensus 94 ~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9999765 36677888999999999763 346666666688999999999999887775444 456888884 45566
Q ss_pred EEEcCCeEEEEECCC-------CeEEEEEcCCCC-------------------------CEEEEEEeCCCCEEEEE-eCC
Q 004737 594 AAAIENYISILDVET-------QVCRLKLQGHKN-------------------------QVHSVCWNTSGEYLASV-SDE 640 (732)
Q Consensus 594 ~~s~dg~I~IwDl~t-------~~~i~~l~~h~~-------------------------~V~sla~spdg~~Lasg-sDg 640 (732)
+.+..|.+.+.+.-. ++....-..|.. ....++|+|.-+.++.. -..
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 667777777765431 222222222211 01124678875544444 488
Q ss_pred eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 004737 641 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 641 ~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg--~~L~sgs~dg~I~IwDl~t 694 (732)
.+.|+|++-. .++.......+.+.-+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 253 ellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8999999776 6676666666666666776665 6799999999999996654
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.90 E-value=1.2e-06 Score=89.85 Aligned_cols=215 Identities=13% Similarity=0.028 Sum_probs=137.4
Q ss_pred CCcEEEEEcCCCeEEEEeccC--CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737 471 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548 (732)
Q Consensus 471 Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~ 548 (732)
+|.|..||..+++.+....-- .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+....... +.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~-~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD-GG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE-TT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec-cc
Confidence 689999999999998777431 1222221 223566788888999999999998874 333332 22211111222 23
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEE-eccC----CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC--
Q 004737 549 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-- 621 (732)
Q Consensus 549 ~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~----~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-- 621 (732)
.++ .+..++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++++.+.........
T Consensus 78 ~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 444 5556789999999999999884 3221 1222333334788999999999999999999998887654322
Q ss_pred --------EEEEEEeCCCCEEEEEe-CCe-EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 622 --------VHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 622 --------V~sla~spdg~~Lasgs-Dg~-I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+.+-....++ .++.+. ++. +.+ |+.++ ..+.... ...+.. ....++..|++++.++.|++||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 555555 775 555 99988 4332222 222222 2457778888888999999999
Q ss_pred CCCCeEE
Q 004737 692 MTENKTL 698 (732)
Q Consensus 692 l~t~~~~ 698 (732)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999875
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=8.6e-09 Score=114.92 Aligned_cols=219 Identities=19% Similarity=0.276 Sum_probs=156.9
Q ss_pred eeecCCCceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCe-EEEEeccCCCceEEEEEcCCCCeEE
Q 004737 431 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLA 508 (732)
Q Consensus 431 ~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~fspdg~~La 508 (732)
+|.......-..-..+.+|...|+.+-|.+.. ..+++++.|..|..||+.+-. .+..+..-......|+|+.....+.
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 34443333333345688999999999999954 478999999999999998743 3444444445578899987555555
Q ss_pred EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEeccCCeeEEEEe
Q 004737 509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQ 586 (732)
Q Consensus 509 sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~~~~~i~~v~~s 586 (732)
+.+..+.|+|||++.+..++..+++|...|..++|.......+.+++.|++|++||..+.. ..+.+....++..-++.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 5667788999999999888999999999999999987766778899999999999987543 33444455667667777
Q ss_pred CCCCEEEEEEc--CCeEEEE---------ECCC-CeEEEEEcCCCCCEEEEEEeCCC----------CEEEEEe-CCeEE
Q 004737 587 PRLGRILAAAI--ENYISIL---------DVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVR 643 (732)
Q Consensus 587 p~g~~ll~~s~--dg~I~Iw---------Dl~t-~~~i~~l~~h~~~V~sla~spdg----------~~Lasgs-Dg~I~ 643 (732)
|-|.-+++--. +..+.++ +..+ ..++..|.+|...|...-|-..+ --|++-+ |..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 75544333222 2233333 3333 36788999999988776664321 2477777 99999
Q ss_pred EEECCC
Q 004737 644 VWSIGS 649 (732)
Q Consensus 644 IWDl~t 649 (732)
+|-+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998864
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=4.8e-07 Score=100.86 Aligned_cols=305 Identities=12% Similarity=0.179 Sum_probs=189.9
Q ss_pred CeeeccccCCceeecc-CCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 004737 402 RFVDDGSLDDNVESFL-SPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 480 (732)
Q Consensus 402 ~~v~~gs~d~~v~~~~-s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~ 480 (732)
.|+++|+.|+-++..- ..+..+...+ . ......+.--+++.||+..|.-+.|+.....|-+...+|.|.||-+-
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~-g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKS-G----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CeEEeccccceeEEEEccccCCccccc-c----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 6888888888877762 2222221111 1 11122334457899999999999999998899999999999999887
Q ss_pred CCeEEEEe--ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE----------------------------
Q 004737 481 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---------------------------- 530 (732)
Q Consensus 481 t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~---------------------------- 530 (732)
.+.-...+ ....+.|.+++|..||..++....||.|.|=.++.+..--+.
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence 66433222 124567889999999999988888887765444321100000
Q ss_pred -----------------------eecCCcceEEEEEc--------CCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC
Q 004737 531 -----------------------FTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 579 (732)
Q Consensus 531 -----------------------l~~h~~~V~sl~fs--------pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~ 579 (732)
+......|..+.|. |+ ...++.|..+|.+.+..-.+......+...-.
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~ 260 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK 260 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence 01111224445553 23 44566777777777665554444444444456
Q ss_pred eeEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737 580 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 650 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~ 650 (732)
+....|+++|..+++++.+. .|.+|. .-|..+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 78899999999999887632 344443 34667778887888999999998898899888999999988764
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
-+.-.+. . .+.|.-.++-+ ..-.|.+||..+.+.. ....| ..+++|+.+...|++-..||.|.
T Consensus 340 ykWgy~e------~---TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i~ 403 (1189)
T KOG2041|consen 340 YKWGYIE------E---TVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVIP 403 (1189)
T ss_pred ceEEEee------e---EEEEEEccCCC----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCCc
Confidence 2211110 0 11111111000 0115889998877654 22222 34566666666666666666553
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=2.7e-06 Score=94.82 Aligned_cols=255 Identities=11% Similarity=0.027 Sum_probs=155.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce--
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 538 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-- 538 (732)
++..++.++.++.+..+|.++|+.+............... .+..++.++.++.|..+|..+++...+ +......+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~~~~ 195 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWT-VNLDVPSLTL 195 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeee-ecCCCCcccc
Confidence 3456777888999999999999988766543321111122 244677788899999999998875333 22111000
Q ss_pred ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--------eeEEEEeC--CCCEEEEEEcCCeEEEEE
Q 004737 539 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILD 605 (732)
Q Consensus 539 ---~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--------i~~v~~sp--~g~~ll~~s~dg~I~IwD 605 (732)
.+.... +.. ++.+..++.+..+|..+++.+........ ...+..+| .++.+++++.+|.++.+|
T Consensus 196 ~~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 196 RGESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cCCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 111111 123 44566789999999999887765542211 00111122 356788888899999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 004737 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 683 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~ 683 (732)
..+++.+..... .....+.. .+..|+.++ ++.+..+|..+++ .+-..... .....+..+ .+.+|++++.
T Consensus 273 ~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~ 343 (394)
T PRK11138 273 LRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDS 343 (394)
T ss_pred CCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeC
Confidence 999987765432 11112222 344455555 9999999998873 22222111 111222222 2456889999
Q ss_pred CCeEEEEECCCCeEE-EEccCCCCee-EEEEeCCCCEEEEEECCCeEEEeC
Q 004737 684 YETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 684 dg~I~IwDl~t~~~~-~~~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|.|+++|..+++.+ ........+. ...+. +..|+.++.||.|+.++
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 999999999999987 3332222232 22332 45788899999998764
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1e-08 Score=110.73 Aligned_cols=207 Identities=14% Similarity=0.260 Sum_probs=147.8
Q ss_pred EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737 485 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 558 (732)
Q Consensus 485 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg 558 (732)
+..+.+|...|..++--.+.+-|++++.|++|++|.++... .+..++..|+.+|.++.|..+- ..+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeeec--cC
Confidence 34567899999998877788889999999999999987432 2356788999999999999773 445455 88
Q ss_pred cEEEEECCCCeeeeEEe---ccCCeeEEEEeCC--CCEEEEE-EcCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEE
Q 004737 559 EIRYWSINNGSCAGVFK---CQSGATQMRFQPR--LGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 627 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~--g~~ll~~-s~dg~I~IwDl~t~~~i~~l~-----~h~~~V~sla~ 627 (732)
.|.+||.--+..+.... .++.+..+..-++ ...++++ +.+.+|+++|.+..+.+..++ +...-+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776654332 1233333433333 3334444 568899999999886665554 34456899999
Q ss_pred eCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeEE
Q 004737 628 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL 698 (732)
Q Consensus 628 spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I-wDl~t~~~~ 698 (732)
.+.|+.++++- .|+|.+.|.+++ +.+..+...+.....++ .|....++....|.++.+ |...++...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 99999999877 999999999998 56665554443333333 345556777777888888 876665443
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=1.1e-05 Score=98.17 Aligned_cols=265 Identities=14% Similarity=0.177 Sum_probs=166.9
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCC---CeEEEEeccCCCceEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDV 498 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t---~~~~~~l~~h~~~V~~l 498 (732)
.-+.+|+|+-. |. + ..+-+.-.+--.+++|-|.|.+||+.-. ...|.+|.-.. ++....+......|..+
T Consensus 235 ~~R~iRVy~Re-G~-L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 235 SRRVIRVYSRE-GE-L--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred ceeEEEEECCC-ce-E--EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 35778888755 31 1 1111222233457899999999998864 34566665332 22222222456689999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEecCCCCceeEE-ee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC----CCC----
Q 004737 499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----NNG---- 568 (732)
Q Consensus 499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~-l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl----~t~---- 568 (732)
.|++|+..||....|. |.+|-..+...-++. +. .....+..+.|+|.....|.....+|.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999987665 999998876543332 22 223345669999987776666666566655443 111
Q ss_pred ------------e----------------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--------E
Q 004737 569 ------------S----------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC--------R 612 (732)
Q Consensus 569 ------------~----------------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~--------i 612 (732)
. +...+.....|.+++|++++..+++...||.|.+|....... .
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~ 469 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL 469 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh
Confidence 0 112333456789999999988899999999999998543211 1
Q ss_pred EEE----------cCCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 613 LKL----------QGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 613 ~~l----------~~h~~~V~sla~spdg~~Lasgs-D---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
..+ ......+..++|..+..+++... + ..+.++++........+.........+..+...++...+
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (928)
T PF04762_consen 470 SSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSL 549 (928)
T ss_pred hhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEE
Confidence 111 11234678899988887777666 4 378888885543333444444445556555566665556
Q ss_pred EEEEcCCeEEEEECCC
Q 004737 679 LVIGCYETLELWNMTE 694 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t 694 (732)
++-..+|.|+.++...
T Consensus 550 ~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 550 YIQTNDGKVFQLSSDG 565 (928)
T ss_pred EEEECCCEEEEeecCC
Confidence 7777788877665544
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.3e-08 Score=103.73 Aligned_cols=251 Identities=14% Similarity=0.139 Sum_probs=175.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC---CeEEEEeccCCCceEEEEEcCCCCeEEEEeC-CCeEEEEecCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP 524 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~ 524 (732)
|.+.|+.|..+ -.+++.+++.||.++.|.-.. -+.+..+..|...|..++.+-++..+.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77778877665 456999999999999997543 2445566789999999999999999999877 999999999875
Q ss_pred Cce-eEEeecCCcceEEEEEcCCC-C-cEEEEEeCCCcEEEEECCCCeeeeEE---eccCCeeEEEEeCCCCEEEEEEcC
Q 004737 525 DYS-LRTFTGHSTTVMSLDFHPSK-E-DLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 525 ~~~-~~~l~~h~~~V~sl~fspdg-~-~llaSgs~Dg~I~iWDl~t~~~i~~~---~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
... ...+..-.+.+.+ ..++.. . .+.++.-.++.|.++|-....|...+ .+..+|.++.+.+-+..+++....
T Consensus 87 DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 532 1112212222222 122221 1 33444557889999998765433222 245779999999999999999999
Q ss_pred CeEEEEECCC------CeEEEE---------EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE----
Q 004737 599 NYISILDVET------QVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE---- 658 (732)
Q Consensus 599 g~I~IwDl~t------~~~i~~---------l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~---- 658 (732)
|.|..|..+. .+.... +...+....++.|+|++..+.+-+ |..|+++++++++....+.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998873 111111 222345678999999999999988 88999999998743222211
Q ss_pred -------------------------eecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 004737 659 -------------------------LSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 702 (732)
Q Consensus 659 -------------------------~~~~-~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~ 702 (732)
+..+ ...-..++|...+++|+.++-=| |++.++.++.+.++.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 1111 12346778999999999887665 8888998888775443
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=3.8e-09 Score=119.43 Aligned_cols=265 Identities=14% Similarity=0.188 Sum_probs=179.9
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eE
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 516 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I 516 (732)
.|+.+++++.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+-+.=+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4667788999999999999999999999999999999999999999999999999999999999999877765433 47
Q ss_pred EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-----cCCeeEEEEeCCCCE
Q 004737 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 591 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~ 591 (732)
.+|++.+-......|. .-.++.|+..-... +.|.......+||+.++..+.++-. ...-.+..|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999886433334443 34677887542222 2344445689999999876655321 122467889999776
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
++- || .+||++....+..|...... ..-.|+|.|.-++.-+ .|||+++. +.++..... .-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~L--dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPSL--DQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHH---HHHhcCccc--cceEEEe
Confidence 653 33 57999988777766544322 2346899998877643 69999987 344333211 1234566
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 672 HPTFPSLLVIGC--Y---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 672 spdg~~L~sgs~--d---------------g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
...|..++..-. | ...+-||....+.+........|..++-++...++...-
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 666664443320 0 023444444444444444555677777777776666543
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=4.3e-08 Score=103.54 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=93.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
...|+.+..+........++....+.+|....+...- +-+|-..+++|+|+||+++|+++..|..|+|-.+......-.
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES 188 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence 3344444443333333334555667777766644443 348999999999999999999999999999988876554344
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 576 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~ 576 (732)
.+.||+.-|..++..++ +.|++++.|++|++||+.+++++.++..
T Consensus 189 fclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred hccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence 56789999999999876 5577999999999999999999877653
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.75 E-value=4.3e-06 Score=85.72 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=133.8
Q ss_pred CCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCE
Q 004737 513 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 591 (732)
Q Consensus 513 Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ 591 (732)
+|+|..||..+++...+.-.+. .....+..+ +++..++ +++.++.|+.||..+|+.+..+.....+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 6889999998877533332211 122221122 2334444 55789999999999999998888755533332 334577
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE-cCCC---CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc-
Q 004737 592 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 665 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l-~~h~---~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~- 665 (732)
+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888999999999999988874 3221 1112223333377777777 899999999998 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 666 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 666 ---------I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+..-.+..++ .++++..++.+..+|+.+++.+- ......+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222233344 78888888864444999999763 2223333332 356778888888999999886
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=1.2e-07 Score=96.78 Aligned_cols=234 Identities=18% Similarity=0.291 Sum_probs=148.4
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce----eEEeecCC------------cceEEEEEcCC-CCcEEEE
Q 004737 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 553 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~------------~~V~sl~fspd-g~~llaS 553 (732)
..+.|++|.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3456999999999999999999999999986643311 12234443 35778888754 3344445
Q ss_pred EeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE--------E-cCCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737 554 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA--------A-IENYISILDVETQVCRLKLQGHKNQVHS 624 (732)
Q Consensus 554 gs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~--------s-~dg~I~IwDl~t~~~i~~l~~h~~~V~s 624 (732)
.+.|.+|++|.+.......+.. ...+.-.-+|.++-+.+. + .|..|..+ .+...-..|...|.+
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNS 177 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINS 177 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeee
Confidence 6679999999997543221111 111111111211111100 0 01111111 111112458889999
Q ss_pred EEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 004737 625 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 625 la~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~-----~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
|.|..|...++++.|=.|.+|++.-....-.+..++.|. ..|++..|+|.. ..+...++.|.|++-|++...+.
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999889999999997655434444555443 347888999975 45667778899999999733211
Q ss_pred ---------EE--------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 699 ---------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 699 ---------~~--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+ ..-...|..+.|+++|++|++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 122356889999999999987654 5799997
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=5.6e-06 Score=84.68 Aligned_cols=227 Identities=17% Similarity=0.191 Sum_probs=132.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEec---cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 456 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 456 lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
++.+.||++||..- |..|.|=..++. ..+.+.. ...-.=..++|+||+..||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 57788999888764 667777655431 1222222 222234679999999999999999999999998533 222
Q ss_pred eec-------CCcceEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC-----CeeeeEEe----ccCCeeEEEEeCCC
Q 004737 531 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK----CQSGATQMRFQPRL 589 (732)
Q Consensus 531 l~~-------h~~~V~sl~fspdg-----~~llaSgs~Dg~I~iWDl~t-----~~~i~~~~----~~~~i~~v~~sp~g 589 (732)
+.. -...|..+.|.+-. ...|++-..+|.++-|-+.. .+....+. ...+|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 211 23456677776432 22333455577777776532 22333333 24579999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC---CEEEEEeCC------eEEEEECCCCCCceeEEEee
Q 004737 590 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG---EYLASVSDE------LVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 590 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg---~~LasgsDg------~I~IWDl~t~~~~~~i~~~~ 660 (732)
+.|++++.... +++. -......+++-..-.+. +.+....|+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 98888876432 0000 00011112221111111 111111111 1123333221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.....|..+..||||..|++...+|.|.+|++.+-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999887665
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.69 E-value=4.7e-06 Score=92.86 Aligned_cols=253 Identities=8% Similarity=0.053 Sum_probs=151.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC----------ceE-EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----------~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+..+++++.++.|.-+|.++|+.+-....... .+. .+.. ++..++.++.++.+..+|.++++...+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~- 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ- 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence 55777778889999999999988766542210 000 1111 355677888999999999998875332
Q ss_pred eecCCcceEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe------eEEEEeCCCCEEEEEEcCCeEEE
Q 004737 531 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 531 l~~h~~~V~s-l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i------~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
.... ..+.+ ..+. + . .++.+..++.|..+|.++|+.+..+....+. ..... .++.+++++.++.+..
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSA 219 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence 2222 22221 1222 2 2 3446677899999999999998877643221 11111 2356788888999999
Q ss_pred EECCCCeEEEEEcCCCC-------CEEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737 604 LDVETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 673 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~-------~V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp 673 (732)
+|..+++.+........ ....+..+| .+..++.++ ++.+..+|..+++ .+-.... .....+. .
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--V 292 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--E
Confidence 99999877655431100 011111122 233444444 8999999999884 3322211 1111122 2
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 674 TFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+..+++++.++.|+.+|..+++.+ ....- .....+..+ .+.+|+.++.||.|.+.|
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 4567888999999999999999876 22111 111222222 255777888888887654
No 300
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.68 E-value=1.1e-05 Score=88.59 Aligned_cols=259 Identities=14% Similarity=0.122 Sum_probs=154.0
Q ss_pred cCCCCEEEEEE---------CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 459 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 459 Spdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.+|... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877642 246789999999766544433 56789999999999999885 67899999876542222
Q ss_pred Eeec-------C---------CcceEEEEEcCCCCcEEEEEeCCCcEE--------------------------------
Q 004737 530 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIR-------------------------------- 561 (732)
Q Consensus 530 ~l~~-------h---------~~~V~sl~fspdg~~llaSgs~Dg~I~-------------------------------- 561 (732)
+..+ - -+.-..+-|+||+..+++.--++..|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2222 0 112356889999988776554444333
Q ss_pred ---EEECCCCeeeeEE-e-----ccCCeeEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEEcC-CCCCE---E
Q 004737 562 ---YWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQG-HKNQV---H 623 (732)
Q Consensus 562 ---iWDl~t~~~i~~~-~-----~~~~i~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~-h~~~V---~ 623 (732)
|+|+.+++....- . ...-+..+.|.+++..+++.-.+. .+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3444444332111 0 111267788989887555544322 577788877644333221 23333 3
Q ss_pred EEEEe-CCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 004737 624 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 692 (732)
Q Consensus 624 sla~s-pdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~d-----g~I~IwDl 692 (732)
.+.|. +++..++..+ || .|.+++...+ ....+......|.. +.+++++..|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 55554 6665555444 77 6667776664 23355555556644 6788888777665553 26777888
Q ss_pred C-CCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 693 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 693 ~-t~~~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
. .+....+......-..+.|||++++++-..
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777766655444436999999999777543
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.66 E-value=4.3e-05 Score=80.43 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=152.5
Q ss_pred eEEEEEcC-CCCEEEEEECCC-cEEEEEcCCCeEEEEeccCCCceE--EEEEcCCCCeEEEEeC-----CCeEEEEecCC
Q 004737 453 VESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 523 (732)
Q Consensus 453 V~~lafSp-dg~~Lasgs~Dg-~I~VWd~~t~~~~~~l~~h~~~V~--~l~fspdg~~Lasgs~-----Dg~I~IWDl~s 523 (732)
...++.+| +...++.+-.-| ...+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34578888 555667776665 467899999998877754333221 3579999999998743 58999999995
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEe-----------------CCCcEEEEECCCCeeeeEEec-----cCCee
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGAT 581 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-----------------~Dg~I~iWDl~t~~~i~~~~~-----~~~i~ 581 (732)
.-..+..+..|.-....+.+.||++.|++.-+ .+-.+.+.|..+|+.+..... ...+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 55556677777767788889999877765432 122466677888888876553 23588
Q ss_pred EEEEeCCCCEEEEEEcCC-------eEEEEECCCCeEEEEE-----cCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 004737 582 QMRFQPRLGRILAAAIEN-------YISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI 647 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~dg-------~I~IwDl~t~~~i~~l-----~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl 647 (732)
.+++..+|..++..-..| -|.+++....-..... ..-...|-+|+++.++.++++.+ .+.+.+||.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 899999976666655444 2444444332111111 12346899999999999998888 779999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
.++ ..+.... -..+..++..+++ +++.+..|.+..
T Consensus 247 ~tg---~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~~~ 281 (305)
T PF07433_consen 247 ATG---RLLGSVP--LPDACGVAPTDDG--FLVSSGQGQLIR 281 (305)
T ss_pred CCC---CEeeccc--cCceeeeeecCCc--eEEeCCCccEEE
Confidence 988 4444332 2234445555555 455555555433
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=4.4e-07 Score=90.94 Aligned_cols=179 Identities=12% Similarity=0.173 Sum_probs=112.9
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-eEEEEeccCCCceEEEEEcCCCC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
.....|+-..+ ...+.++..|.++=.+-+.+--+..++++..||.+.+++.+.- ...+.+......-.+.++...++
T Consensus 68 ~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~ 145 (319)
T KOG4714|consen 68 RCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN 145 (319)
T ss_pred EEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc
Confidence 33444544433 2345555566665555555666778999999999999998751 11122211111112223333444
Q ss_pred eEEEEe-----CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccC
Q 004737 506 RLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQS 578 (732)
Q Consensus 506 ~Lasgs-----~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~ 578 (732)
.+.++. .-+..++|+++-.+....... ....|.+++-+|...+++++|+.||.+-+||.+....... ++ ++.
T Consensus 146 ~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~ 224 (319)
T KOG4714|consen 146 SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA 224 (319)
T ss_pred EEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh
Confidence 444432 123456677664332122222 2234999999999899999999999999999987643322 22 456
Q ss_pred CeeEEEEeCC-CCEEEEEEcCCeEEEEECCC
Q 004737 579 GATQMRFQPR-LGRILAAAIENYISILDVET 608 (732)
Q Consensus 579 ~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t 608 (732)
++..+.|+|. ...|++++.||.+..||..+
T Consensus 225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 7899999985 56799999999999999876
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-06 Score=91.48 Aligned_cols=251 Identities=14% Similarity=0.152 Sum_probs=148.6
Q ss_pred EEEEEcCCCeEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEE
Q 004737 474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 552 (732)
Q Consensus 474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~lla 552 (732)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|.-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 67777667776677788899999999999766 78889999999999999865 46667766 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeee-EEec---cCCeeEEE------EeCCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCC
Q 004737 553 SCDNNSEIRYWSINNGSCAG-VFKC---QSGATQMR------FQPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 618 (732)
Q Consensus 553 Sgs~Dg~I~iWDl~t~~~i~-~~~~---~~~i~~v~------~sp~g~~ll~~s~dg~I~IwDl~----t~~~i~~l~~h 618 (732)
.|..+|.|.|||++..+-.. .+.. ..++..++ ..+.++.+++...+ +..|++. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 12233332 23334445444433 2233322 222322222 2
Q ss_pred CCCEEEEEEeCCCCEEEEEe--CC---eEEE----EECCCCCCceeEEEeecC-CCce------EEEEEeCCCCEEEEEE
Q 004737 619 KNQVHSVCWNTSGEYLASVS--DE---LVRV----WSIGSGSKGECIHELSCT-GNKF------HSCVFHPTFPSLLVIG 682 (732)
Q Consensus 619 ~~~V~sla~spdg~~Lasgs--Dg---~I~I----WDl~t~~~~~~i~~~~~~-~~~I------~sl~fspdg~~L~sgs 682 (732)
.+...++..++..+.++... +. .++. -|..++. .....-..+ +.+- ..+.-.++..+++..+
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc--eeeeecccccCCcccccccccceeccccccEEEEec
Confidence 44555555555444443332 11 1111 1111111 000111111 1110 1122234445544444
Q ss_pred c-CCeEEEEECCCCeEEEEccCCCCeeEEEEeCC--CCEEEEEECCCeEEEeC
Q 004737 683 C-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 732 (732)
Q Consensus 683 ~-dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd--g~~LaSgs~DG~I~IWD 732 (732)
. .+.+.+||..+.+.+....-..+|.+++.... +.+|++-. |..++||+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 3 44899999999999865566688988886543 23666554 55677764
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-06 Score=92.60 Aligned_cols=244 Identities=15% Similarity=0.132 Sum_probs=153.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW 519 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IW 519 (732)
....+++|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|+.|-..|.|.||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3456888999999999999877 7889999999999999999999888888 789999998764 567778889999999
Q ss_pred ecCCCCceeEEeec--CCcceEEEEEc------CCCCcEEEEEeCCCcEEEEECCC----CeeeeEEeccCCeeEEEEeC
Q 004737 520 DTENPDYSLRTFTG--HSTTVMSLDFH------PSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP 587 (732)
Q Consensus 520 Dl~s~~~~~~~l~~--h~~~V~sl~fs------pdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~~~~~i~~v~~sp 587 (732)
|++.....+..+.+ ...+|..++.- +.+ .+++.... .+.+|++.. ..++..+...+...++.+.+
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99987654444433 22344444332 222 23333322 355676542 22333444445566777777
Q ss_pred CCCEEEEEEcCC-------eE-EEEECCCCeEEEEEc-CCCC-C------EEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 004737 588 RLGRILAAAIEN-------YI-SILDVETQVCRLKLQ-GHKN-Q------VHSVCWNTSGEYLASVS--DELVRVWSIGS 649 (732)
Q Consensus 588 ~g~~ll~~s~dg-------~I-~IwDl~t~~~i~~l~-~h~~-~------V~sla~spdg~~Lasgs--Dg~I~IWDl~t 649 (732)
..+++++....+ .| .-.|-.++..+...+ ++.+ . -..+.-.++..+|+..+ .+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 667777665531 11 112333444333221 1211 0 01122234566666655 45899999998
Q ss_pred CCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 004737 650 GSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fs-pdg~~L~sgs~dg~I~IwDl~ 693 (732)
. +.+..+... .+|..++.. -++..++..-.|..++||..+
T Consensus 421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 7 566665543 667666543 345545555666778887654
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=1.1e-06 Score=93.09 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE--EeecCCcceEEEEEcCCCCcEEE--EEeCCCcEEEEECCCCee
Q 004737 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~--~l~~h~~~V~sl~fspdg~~lla--Sgs~Dg~I~iWDl~t~~~ 570 (732)
+..+.+++++++||++..++.+.++++.......+ ....-...-+++.|..+....++ ..++...+.+|.+..+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44556677888888888888877777765432111 11112223345555544444332 233445566666666777
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 004737 571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 648 (732)
Q Consensus 571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l-~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~ 648 (732)
...+.+-.-+..++|+||+.+|+++..|..|+|-.......+..+ -||+..|..++.-++.. |++++ |++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 777777778999999999999999999999999877765555444 46999999999986655 55555 9999999999
Q ss_pred CCCC
Q 004737 649 SGSK 652 (732)
Q Consensus 649 t~~~ 652 (732)
+++.
T Consensus 224 sgk~ 227 (390)
T KOG3914|consen 224 SGKL 227 (390)
T ss_pred cCCc
Confidence 9843
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=8e-07 Score=94.94 Aligned_cols=209 Identities=16% Similarity=0.145 Sum_probs=149.1
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEecc--CCCceEEEEEcCC-C-CeEEEE-eCC
Q 004737 440 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPS-L-SRLATS-SAD 513 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fspd-g-~~Lasg-s~D 513 (732)
..-+..++.|-..|.+++.+-|+.++++.+. |..++++|+++...+.-++- -.+.+.++ .++. - ..|+++ -.+
T Consensus 43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKS 121 (558)
T ss_pred eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccC
Confidence 3456778899999999999999999999777 99999999998766644322 22222221 2221 1 133333 357
Q ss_pred CeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC------CeeeeEE----------ec
Q 004737 514 RTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GSCAGVF----------KC 576 (732)
Q Consensus 514 g~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t------~~~i~~~----------~~ 576 (732)
+.|.|+|-....+.. ..-.-|..+|.++.+.+.++..+ +....|.|..|.... .+....+ +.
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 899999977655333 34455899999999999875544 888889999999872 2222222 23
Q ss_pred cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------------------------------CCCC-CEE
Q 004737 577 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------------------------GHKN-QVH 623 (732)
Q Consensus 577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--------------------------------~h~~-~V~ 623 (732)
.....++.|+|++..+.+-+.|..|++++.++++.+..+. .|.. .-+
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence 3457899999999999999999999999999887654432 1111 235
Q ss_pred EEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737 624 SVCWNTSGEYLASVSDELVRVWSIGSG 650 (732)
Q Consensus 624 sla~spdg~~LasgsDg~I~IWDl~t~ 650 (732)
.++|...+++|+.+.==-|+|.++.++
T Consensus 281 ~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred eeEEcCCCCEEEeecceeEEEEEeecC
Confidence 678889999999888445899999887
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=1.2e-05 Score=95.29 Aligned_cols=244 Identities=11% Similarity=0.151 Sum_probs=152.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
.+.|.++.|.-+..-++.+..+|.|.+-|.++.... ....-...|.+++|+||...++..+.++++.+-.-.=.-...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 367999999999999999999999999988875443 2233456799999999999999998888887654321000001
Q ss_pred Eee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCCeeEEEEeCCCCEEEEEEc----C-Ce
Q 004737 530 TFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY 600 (732)
Q Consensus 530 ~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~----d-g~ 600 (732)
.+. ...+....+-|-.....+ -|+ .|.....+... .+.......+..-+.+.|--||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 110 011223344443321111 111 22222221111 111111123455677999999988887432 3 78
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~ 676 (732)
|+|||.+ +..-..-....+--.+++|-|.|..+++.. |+.|.+|.-..-........+......+..++|..++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999988 432222222334456899999999998854 56799998765544444444444455599999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCeEE
Q 004737 677 SLLVI---GCYETLELWNMTENKTL 698 (732)
Q Consensus 677 ~L~sg---s~dg~I~IwDl~t~~~~ 698 (732)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88883 34446999998876544
No 308
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.57 E-value=1.3e-05 Score=80.96 Aligned_cols=186 Identities=10% Similarity=0.028 Sum_probs=130.1
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eE-EeecCCcceEEE
Q 004737 464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LR-TFTGHSTTVMSL 541 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~-~l~~h~~~V~sl 541 (732)
-+..++.|.++++.+++.+.....+....-.+..+++++|++++++.+....|..|.++..... ++ .....++.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3666778888888888765444443222233889999999999999999999999999865433 33 233344556788
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------ccCCeeEEEEeCCCC--EEEEEEcCCeEEEEECCCCeEEE
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRL 613 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------~~~~i~~v~~sp~g~--~ll~~s~dg~I~IwDl~t~~~i~ 613 (732)
.|+.. ...+|++..||++.|||++......... +.+.+..+.|++.|. .|+..-.-+.+.+.|+++++...
T Consensus 210 S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 210 SFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eeccC-cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 88877 4678899999999999998754433222 446688999998654 34445456899999999985443
Q ss_pred EEc-------CCCC-CEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737 614 KLQ-------GHKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 650 (732)
Q Consensus 614 ~l~-------~h~~-~V~sla~spdg~~LasgsDg~I~IWDl~t~ 650 (732)
.+. .|.. .|..-+|+.++.-+.+..+..+.-|++.+.
T Consensus 289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred EEecCccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 332 1222 377888888887777777666677776553
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=3.7e-08 Score=111.69 Aligned_cols=200 Identities=17% Similarity=0.264 Sum_probs=149.1
Q ss_pred CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-cE
Q 004737 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 560 (732)
Q Consensus 482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-~I 560 (732)
++..++|+.|+...+|++|+-+.++|+.|+..|.|++|++.++. ....+.+|...|+.+.-+.+|..+|.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchH
Confidence 45566778899999999999999999999999999999999987 46778899999999999999988887766555 57
Q ss_pred EEEECCC-CeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-C---CCCCEEEEEEeCCCCEEE
Q 004737 561 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-G---HKNQVHSVCWNTSGEYLA 635 (732)
Q Consensus 561 ~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~---h~~~V~sla~spdg~~La 635 (732)
.+|++.. +...+.| ....++.|+.....-+.|+......+||+.++.+..++- + ....-++..|+|+..+|+
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899864 3333333 345678888775666677777889999999987665522 1 122337789999988776
Q ss_pred EEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 636 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 636 sgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
- || .+||++.. ..++.+.... ....-.|+|.|.-+++-+ .|||+++.+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 4 44 58999876 4455444322 122337999998777743 58999988765
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.54 E-value=1.4e-05 Score=89.52 Aligned_cols=222 Identities=12% Similarity=0.133 Sum_probs=126.2
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004737 490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569 (732)
Q Consensus 490 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~ 569 (732)
...-....+.++|++++++++ .||...||...... .+. .+....++|.+.+ . +|+-.....|.++.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCc-c-EEEEECCCeEEEEEcCccc
Confidence 344557899999999998884 67788888743221 111 2455678898843 3 4566668889997433333
Q ss_pred eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 570 ~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
....+..+..+..+-. |. ++....++.|.+||+.+++.+.++... +|..+.|++++.+++..++..+.|++...
T Consensus 101 ~~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp TT-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3334444333443333 44 445555569999999999999998743 48999999999999999988888887653
Q ss_pred C--------CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737 650 G--------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 650 ~--------~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaS 721 (732)
. .....+..+......|.+.+|..+ .++..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 000123333333677889999887 45555544 6666 566776666555677888888888888999
Q ss_pred EECCCeEEEe
Q 004737 722 ASHDKCVKIW 731 (732)
Q Consensus 722 gs~DG~I~IW 731 (732)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 9999888764
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=1.3e-06 Score=87.55 Aligned_cols=194 Identities=14% Similarity=0.133 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE------------EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~------------~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
|+.+.|+.+ ..|+++..++.+..+....+.+. +.+..|.++-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666543 35666666666655554433332 22223333322223333467799999999999999
Q ss_pred cCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeee-EEeccCCeeEEEEeCCCCEE-
Q 004737 521 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI- 592 (732)
Q Consensus 521 l~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~-~~~~~~~i~~v~~sp~g~~l- 592 (732)
.+......+.+. .|.+ -.+.++...++ ++.++. .-+..+.|+++..+.+. ..+....+.+++-+|....+
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 875221111111 1221 12222222322 222222 12345566665433322 12223448888888876554
Q ss_pred EEEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCC
Q 004737 593 LAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~~-~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t 649 (732)
++|+.||.+.+||.+... +...++.|+.+|+.+.|+|. +..|++++ ||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 566678999999999873 34456789999999999995 67788888 99999999765
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.51 E-value=2.8e-05 Score=88.62 Aligned_cols=179 Identities=11% Similarity=0.044 Sum_probs=120.1
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-------------------------
Q 004737 543 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI------------------------- 597 (732)
Q Consensus 543 fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~------------------------- 597 (732)
+.|||..+....-..+.+.+.|.++.+....+........+.++++++++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3455555544444557788889998888888877777778889999888887751
Q ss_pred ---------------CCeEEEEECCC-----CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCC---
Q 004737 598 ---------------ENYISILDVET-----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--- 652 (732)
Q Consensus 598 ---------------dg~I~IwDl~t-----~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~--- 652 (732)
++.|.++|.++ ...+..+. -......+.++|||+++++++ +.+|.|+|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 23477777776 23444443 445678899999999999888 88999999987532
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CeEE-EEccCCCCee-----EE
Q 004737 653 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDKLVS-----SL 710 (732)
Q Consensus 653 ------~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t----------~~~~-~~~~h~~~V~-----sl 710 (732)
...+.+... +..-...+|.++|..+.+..-|..|..||+.. ...+ .+.-|..+-. .=
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 112233332 33445678999998777788899999999876 2233 3333333221 12
Q ss_pred EEeCCCCEEEEEE
Q 004737 711 AASTVNGMVASAS 723 (732)
Q Consensus 711 a~spdg~~LaSgs 723 (732)
.-.+||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367788887764
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.51 E-value=4.5e-05 Score=78.17 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=109.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCC------CCeEEEEeCCCeEEEE
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW 519 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~I~IW 519 (732)
=.-++||||+.+||.+...|+|+|||+...+ +..+.. -...|..+.|.+. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4569999999999999999999999987633 333321 2356777777552 2246677788888887
Q ss_pred ecCCC---Cc-eeEE--ee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE
Q 004737 520 DTENP---DY-SLRT--FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 520 Dl~s~---~~-~~~~--l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l 592 (732)
-+..+ .+ .... +. .+...|.++.|+|....+++.|.....-..+. ....++++-.+-.+..++
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyy 194 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYY 194 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcE
Confidence 76421 11 1122 22 24668999999998655554444332100000 001222222222222111
Q ss_pred E--EEEcCCe------EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737 593 L--AAAIENY------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 593 l--~~s~dg~------I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
. +...|+. ..+|.+-+.+...........|..|..+|||.+|++.. +|.|.+|++.+-
T Consensus 195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 1 1111111 12233222222222223567899999999999999999 999999999875
No 314
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.49 E-value=0.00038 Score=78.08 Aligned_cols=243 Identities=14% Similarity=0.098 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCEEEEE-ECC----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC-----------eE
Q 004737 453 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 516 (732)
Q Consensus 453 V~~lafSpdg~~Lasg-s~D----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~I 516 (732)
+..+++||||++||.+ +.. ..|+|+|+++++.+...-... ....+.|.+|++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4468899999998865 333 469999999998765321111 123399999988877765443 37
Q ss_pred EEEecCCCCce-eEEeecCCcc--eEEEEEcCCCCcEEEEEeCC---CcEEEEECCCC-----eeeeEEeccCCeeEEEE
Q 004737 517 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF 585 (732)
Q Consensus 517 ~IWDl~s~~~~-~~~l~~h~~~--V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~-----~~i~~~~~~~~i~~v~~ 585 (732)
+.|++.++... ...+...... ...+..+++++.+++..... ..|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2344443333 56888899998888766544 35888888864 33333333333433332
Q ss_pred eCCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCce
Q 004737 586 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 654 (732)
Q Consensus 586 sp~g~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~ 654 (732)
.. +..+++.+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|++|++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 22 444444443 3578888888764 2334444555433333334455555544 55 7999999822 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEE
Q 004737 655 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 700 (732)
Q Consensus 655 ~i~~~~~-~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~~~~~ 700 (732)
....+.. ..+.|..+...++...+...-.. ..|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 3333332 33445666655666554443322 2899999999887643
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.47 E-value=0.00017 Score=75.90 Aligned_cols=225 Identities=13% Similarity=0.110 Sum_probs=147.6
Q ss_pred eEEEEEcC-CCCeEEEEeCCC-eEEEEecCCCCceeEEeecCCcce--EEEEEcCCCCcEEEEE----eCCCcEEEEECC
Q 004737 495 ITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSC----DNNSEIRYWSIN 566 (732)
Q Consensus 495 V~~l~fsp-dg~~Lasgs~Dg-~I~IWDl~s~~~~~~~l~~h~~~V--~sl~fspdg~~llaSg----s~Dg~I~iWDl~ 566 (732)
...++.+| ....++.+-.-| ...+||..++.. ...+....+.- =.-+|++||..++++- ...|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44677888 455666666655 467889888764 32332222111 1357999987766542 235789999998
Q ss_pred -CCeeeeEEecc-CCeeEEEEeCCCCEEEEEEc------------------CCeEEEEECCCCeEEEE--E--cCCCCCE
Q 004737 567 -NGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLK--L--QGHKNQV 622 (732)
Q Consensus 567 -t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~------------------dg~I~IwDl~t~~~i~~--l--~~h~~~V 622 (732)
..+.+..+... -+...+.+.|++..|+++.. +-.+.+.|..+++.+.. + .-|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 55666666543 34678899999988777642 22477788888887766 4 2377789
Q ss_pred EEEEEeCCCCEEEEEe-CC-------eEEEEECCCCCCceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCC-eEEE
Q 004737 623 HSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLEL 689 (732)
Q Consensus 623 ~sla~spdg~~Lasgs-Dg-------~I~IWDl~t~~~~~~i~----~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~I 689 (732)
..+++.++|..++..- .| .|-+++.... ...+. ........+-++++++++.++++.+--+ .+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999998887765 33 3555554331 11111 1123357799999999999887776655 8999
Q ss_pred EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737 690 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 690 wDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~ 724 (732)
||..+++.+....- ..+..++..+++ +++|.+.
T Consensus 244 ~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence 99999998844322 235666665555 5665544
No 316
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00027 Score=78.50 Aligned_cols=251 Identities=12% Similarity=0.132 Sum_probs=175.0
Q ss_pred EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEE
Q 004737 474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 552 (732)
Q Consensus 474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~lla 552 (732)
+.+++..+......+..+. ....+.+.+++..++... ....+.+.+... .........-...-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666655554443 566778888885554443 223455555542 2111111111134567888999888888
Q ss_pred EEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 553 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 553 Sgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
....+..|.+.|..+.++............++++++++.++++.. ++.+.+.|..+.+.+.....-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999988888888776667889999999988888877 689999999999888775544444 8999999
Q ss_pred CCCEEEEEe--CCeEEEEECCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEE
Q 004737 630 SGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTL 700 (732)
Q Consensus 630 dg~~Lasgs--Dg~I~IWDl~t~~~~~~i~-~---~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~ 700 (732)
+|..++.+. ++.|.++|..... ... . .......-..+.+++++.++++..... .+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999877777 8899999976642 221 1 112234456789999999777776654 899999999888744
Q ss_pred c-cCCC-CeeEEEEeCCCCEEEEEECC-CeEEE
Q 004737 701 S-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 730 (732)
Q Consensus 701 ~-~h~~-~V~sla~spdg~~LaSgs~D-G~I~I 730 (732)
. .-.. ....+.++|++++++..... +.|.+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 2 1111 56778999999988877443 44544
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.44 E-value=3.9e-06 Score=96.41 Aligned_cols=181 Identities=18% Similarity=0.275 Sum_probs=141.4
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 540 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s 540 (732)
++..++.|+.-..+..+|+.+.+..+...-....|+-++. +++++.+|...|+|.+-|..+.+ .+.++..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 3456777887888999999998887776555545666665 67899999999999999999866 68999999999998
Q ss_pred EEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCC--
Q 004737 541 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET-- 608 (732)
Q Consensus 541 l~fspdg~~llaSgs~---------Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t-- 608 (732)
++.. .++|++|+. |..|+|||++..+.+..+..+....-+.|.|.- ..+++++..|...+.|..+
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8887 356667764 456899999998888777766667778888853 4577888899999999433
Q ss_pred -C-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737 609 -Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 609 -~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl 647 (732)
. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 2 22233333445699999999999999999 999999983
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=9.4e-06 Score=93.39 Aligned_cols=175 Identities=14% Similarity=0.216 Sum_probs=129.2
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe
Q 004737 550 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 628 (732)
Q Consensus 550 llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s 628 (732)
.++-|+.-..+..+|+++.+..+...... ++.-++. +++.+++|...|+|.+-|.++.+.+.++..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 34466666778889999888777766544 4544444 4578889999999999999999999999999999976654
Q ss_pred CCCCEEEEEe----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEC---CC
Q 004737 629 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TE 694 (732)
Q Consensus 629 pdg~~Lasgs----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl---~t 694 (732)
.|+.|++|+ |.-|+|||++.... +..+..+.++ .-+.|+|.. ..+++++..|...+.|. .+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhc---cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 677888776 33689999998733 3222222222 445778865 56888899999999883 33
Q ss_pred CeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 695 NKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 695 ~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
...- .+......+.++++++++..++.+..+|.|.+|-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2211 2334455699999999999999999999999993
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.38 E-value=0.00017 Score=82.67 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=149.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC------ceE--EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 533 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~ 533 (732)
+..++.++.++.|..+|..+++.+-.+..... .+. .+.+. ++..++.++.++.|..+|.++++...+ +..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK-FGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee-ecC
Confidence 34666777789999999999988866643322 010 11111 226788888999999999999875333 221
Q ss_pred CCcc-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEEeccCC-------------------
Q 004737 534 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 579 (732)
Q Consensus 534 h~~~-----V-~sl~fspdg~~llaSgs---------~Dg~I~iWDl~t~~~i~~~~~~~~------------------- 579 (732)
.... + ....+.. .. ++.++ .++.|..+|..+++.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--CE-EEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 1110 1 1122221 23 33332 367899999999998887764211
Q ss_pred --e-eEEEEeCCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEcCCCCCEE------EEEEe----
Q 004737 580 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN---- 628 (732)
Q Consensus 580 --i-~~v~~sp~g~~ll~~s~dg------------------~I~IwDl~t~~~i~~l~~h~~~V~------sla~s---- 628 (732)
+ ....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1245555667888887665 799999999998887652111110 01111
Q ss_pred CCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 004737 629 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 686 (732)
Q Consensus 629 pdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg------------------s~dg~ 686 (732)
-++. +++.++ +|.+..+|.++++ .+-..... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1333 456666 8999999999984 33332211 11123333 223332 23568
Q ss_pred EEEEECCCCeEE-EEccC--C------CCe--eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 687 LELWNMTENKTL-TLSAH--D------KLV--SSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 687 I~IwDl~t~~~~-~~~~h--~------~~V--~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|.-+|+.+++.+ ..... . .+. ..+. -.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence 889999999887 22211 1 111 1222 2457788888999988764
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=8.8e-07 Score=91.93 Aligned_cols=160 Identities=13% Similarity=0.184 Sum_probs=120.5
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEE
Q 004737 552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 626 (732)
Q Consensus 552 aSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~V~sla 626 (732)
++.+.+-.|-+-|++++... .|...+.|.++.|...++.++.|+.+|.|..+|++.. .+...+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 45556777889999877543 3335577888889888899999999999999999865 3444554 899999998
Q ss_pred EeC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 004737 627 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 702 (732)
Q Consensus 627 ~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~s--l~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~ 702 (732)
.-. ++.+|++.+ +|+|++||++.-+...-+..+.+|-+.-.- +.+.+....+++++.|-..+||.++.+.++....
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 766 677887777 999999999987444447788877654333 3456667789999999999999999999884332
Q ss_pred -----CCCCeeEEEEe
Q 004737 703 -----HDKLVSSLAAS 713 (732)
Q Consensus 703 -----h~~~V~sla~s 713 (732)
.+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 23355666664
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=1.3e-05 Score=91.55 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=128.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
.+.|+|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.++++|+.||+|.|-.+.+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888886 679999999999999987543 2 333345443 56899999999999999999887663 23
Q ss_pred EeecCCcceEEEEEcCC----CCcEEEEEeCCCcEEEEECC---CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 530 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspd----g~~llaSgs~Dg~I~iWDl~---t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.+. ...++.+|+++|+ ....+++|+..| +.++.-+ ....+......+.|.++.|..+ +++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 333 4578999999998 234556888777 7776532 2222223335578999999743 66666667799
Q ss_pred EEECCCCeEEEEEcCCCCCE------EEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 603 ILDVETQVCRLKLQGHKNQV------HSVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 603 IwDl~t~~~i~~l~~h~~~V------~sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
|||+.+...+..+......+ ..+.|.++.+ |+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence 99999988877766433322 3577876554 5556667788888873
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=1.7e-06 Score=89.92 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=118.8
Q ss_pred EEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC----CceeE
Q 004737 455 SCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 529 (732)
Q Consensus 455 ~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~----~~~~~ 529 (732)
.|+|+-+-. +-++.+.+-.|-+-|++++-.. .|. ..+.|.++.|.-.+++++.|+..|.|.++|++.. ..+..
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 346664211 2255566778888898886433 232 5567999999988899999999999999999875 33333
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEeccCC---eeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~---i~~~~~~~~---i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
.+ .|...|+++.........|++.+.+|.|++||++.-++ +..+..|.. ..-+.+.+..+.+++++.|...+|
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 34 48899999987764456666888899999999998777 666664322 223455677889999999999999
Q ss_pred EECCCCeEEEEEcC
Q 004737 604 LDVETQVCRLKLQG 617 (732)
Q Consensus 604 wDl~t~~~i~~l~~ 617 (732)
|.++.+..+.++..
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.32 E-value=6.6e-05 Score=83.99 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=131.5
Q ss_pred EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---C-CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737 474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 549 (732)
Q Consensus 474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~ 549 (732)
+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..+.++|+.++..... . ...+.-....|+|||+.
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~-~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-L-NFNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-e-ccCCccCCccCCCCCCE
Confidence 3333433 4555555555667888899999987665532 2 3689999998764322 1 13344566789999999
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEE
Q 004737 550 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHS 624 (732)
Q Consensus 550 llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~s 624 (732)
++++...||. |+++|+..+...+.....+.-..-.|+|+|++++.++.. | .|.++|.+....... ......-..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcC
Confidence 9999888875 666688776644423333334567899999999888764 3 588888887755332 222222237
Q ss_pred EEEeCCCCEEEEEe--CCe--EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004737 625 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 685 (732)
Q Consensus 625 la~spdg~~Lasgs--Dg~--I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg 685 (732)
-.|+|||++|+..+ +|. |.+.|+.++.. +..+. .......-.|.+++..+...+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 78999999999888 564 77777766532 22221 222334457778887766655443
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.00071 Score=75.79 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=71.0
Q ss_pred eEEEEECCCCCCceeEE-EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEE
Q 004737 641 LVRVWSIGSGSKGECIH-ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 641 ~I~IWDl~t~~~~~~i~-~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~L 719 (732)
.-.+|++...+. +++. ..-.....+.+++++|+...++.|+.||.|.+||...+... ...+.-.++.++|+|+|.++
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEE
Confidence 345677655432 2322 22346788999999999999999999999999999777544 33555678999999999999
Q ss_pred EEEECCCeEEEeC
Q 004737 720 ASASHDKCVKIWK 732 (732)
Q Consensus 720 aSgs~DG~I~IWD 732 (732)
++|+..|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
No 325
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00012 Score=84.47 Aligned_cols=206 Identities=15% Similarity=0.239 Sum_probs=138.7
Q ss_pred EEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 004737 499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 568 (732)
Q Consensus 499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~----- 568 (732)
+|++.+..+|.|+.+|.|.+++-. -..++.+..+...+...-|.-++..+|++.+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999988887654 2334667777766444444445555666665544 5999998642
Q ss_pred -eee---eEEe-----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCCCCCEEEEEEeCCCCE-E
Q 004737 569 -SCA---GVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L 634 (732)
Q Consensus 569 -~~i---~~~~-----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~----t~~~i~~l~~h~~~V~sla~spdg~~-L 634 (732)
.|+ +.+. ...++.+++++.+-..+++|-.+|.|..+.-+ .+....-.....++|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 344 2222 13457889999998999999999999998532 12212222234679999999999887 4
Q ss_pred EEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeE
Q 004737 635 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSS 709 (732)
Q Consensus 635 asgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~s 709 (732)
+++.-..|.+|.+.... .....+..++..+.|..|++....+++++ ...|++|+......- .+. +|...+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 44557789999998432 34555778888999999988776454444 347999998765443 555 66554433
No 326
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.30 E-value=2.1e-06 Score=61.97 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=35.8
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 478 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd 478 (732)
..+.++.+|.+.|++|+|+|++.+|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35788999999999999999999999999999999997
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.30 E-value=2.1e-06 Score=62.02 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=36.9
Q ss_pred CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
++++.++.+|...|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=2e-05 Score=89.89 Aligned_cols=182 Identities=13% Similarity=0.210 Sum_probs=131.4
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 571 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i 571 (732)
.+.++|++++ ++.|+.|+.+|.|++++....- .+...|... ..+| .++++|+.||.|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCccc
Confidence 3557777775 5789999999999999987421 344445443 3444 56779999999999999999988
Q ss_pred eEEeccCCeeEEEEeCC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEE
Q 004737 572 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 644 (732)
Q Consensus 572 ~~~~~~~~i~~v~~sp~-----g~~ll~~s~dg~I~IwDl~t--~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~I 644 (732)
..+....++.+++++|+ .+.+++|+..| +.++.-+- .+.-..+....++|.+++|. |.+|+-++|--|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 88888899999999997 56788888888 77776442 12222455678899999995 78899999777999
Q ss_pred EECCCCCCceeEEEeecCCCc------eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 645 WSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 645 WDl~t~~~~~~i~~~~~~~~~------I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
||+.+. ..+..+...... -..+.|.++.+ ++.|...+|+|..++
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 999886 333333322222 23466776664 444555578888777
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.29 E-value=0.0016 Score=70.83 Aligned_cols=271 Identities=14% Similarity=0.096 Sum_probs=139.0
Q ss_pred EEEEcCCCCEEEEEEC-CC--cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737 455 SCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
.=+|.+||+.|+.++. || .+.+.|+.+++....-.+.........++++.+.++....+..|+-.|+++.+. ...+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy 118 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVY 118 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEE
Confidence 3477889977665554 54 566678888877655543323333566788888887776777899999998653 3455
Q ss_pred ecCCcceEEEEEcC-CCCcEEEEEe----------------------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC
Q 004737 532 TGHSTTVMSLDFHP-SKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 588 (732)
Q Consensus 532 ~~h~~~V~sl~fsp-dg~~llaSgs----------------------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~ 588 (732)
......+-...|.. .+...++... ....|...|+.+|+....+....-+..+.|+|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 54555554455542 2233332221 113466678888888777776666888999998
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEEcCCC--CCEEEEEEeCCCCEEEEEe---CC---eEEEEECCCCCCce
Q 004737 589 LGRILAAAIEN-----YISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS---DE---LVRVWSIGSGSKGE 654 (732)
Q Consensus 589 g~~ll~~s~dg-----~I~IwDl~t-~~~i~~l~~h~--~~V~sla~spdg~~Lasgs---Dg---~I~IWDl~t~~~~~ 654 (732)
...+++-+.+| .-+||-+++ +.....+..+. ..+..=-|.+||..|..-+ .+ .|.-+|+.++.. .
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 88777776654 124554433 23333333332 2344557899998776533 22 577778877643 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCeEEEEccCCC-----------Ce
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LV 707 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg----------------~I~IwDl~t~~~~~~~~h~~-----------~V 707 (732)
.+... .....+-.++|+.+++-=+.|. -|++++++.+....+..|.. .=
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22222 1344556678888544333331 56778888877654444421 12
Q ss_pred eEEEEeCCCCEEE-EEECCCeEEEe
Q 004737 708 SSLAASTVNGMVA-SASHDKCVKIW 731 (732)
Q Consensus 708 ~sla~spdg~~La-Sgs~DG~I~IW 731 (732)
-...|+||+++|+ ++...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 4578999999665 45567766665
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.00011 Score=83.05 Aligned_cols=272 Identities=12% Similarity=0.124 Sum_probs=152.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 527 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~ 527 (732)
|...|.--+++..++|++.|+.-|.|++|+-..++....- .+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3444555667778899999999999999997776554332 234455666778888888999999999999987763322
Q ss_pred eEE-----eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-----eeeeEEeccCCeeEEEEeCCCCEEEEEEc
Q 004737 528 LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 528 ~~~-----l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-----~~i~~~~~~~~i~~v~~sp~g~~ll~~s~ 597 (732)
-.. -..|...|++++|++++..++ +|+..|.|.+-.+... .....+...+.|..+.+.. .++++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 111 123778899999999976555 9999999999888762 1222333445666666553 44554444
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCC-EEEEEEeCC----CCEEEEEeCCeEEEEECCCCCCceeEEEee-----------
Q 004737 598 ENYISILDVETQVCRLKLQG-HKNQ-VHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELS----------- 660 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~~l~~-h~~~-V~sla~spd----g~~LasgsDg~I~IWDl~t~~~~~~i~~~~----------- 660 (732)
-..| +++++.++....-+. ..+. -...||-|. ..-.+.|+.--.|+|..+-.. ..+.+..
T Consensus 189 ~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p 265 (726)
T KOG3621|consen 189 TRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAP 265 (726)
T ss_pred hhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCC
Confidence 3333 344443221111011 1111 234455443 233333443335667654221 1111110
Q ss_pred -----c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737 661 -----C-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 661 -----~-------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSg 722 (732)
. +.-....+.+-.++ .+++-+.-| |||+|..+...+.+......|..++.+ ++-|+.-
T Consensus 266 ~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL 341 (726)
T KOG3621|consen 266 EIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVL 341 (726)
T ss_pred cccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEE
Confidence 0 00011111121222 344444444 889998888777665455566666654 4445555
Q ss_pred ECCCeEEE
Q 004737 723 SHDKCVKI 730 (732)
Q Consensus 723 s~DG~I~I 730 (732)
..|+.+++
T Consensus 342 ~~d~~l~~ 349 (726)
T KOG3621|consen 342 NLDRGLKV 349 (726)
T ss_pred ecCCceeE
Confidence 55664443
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00016 Score=80.12 Aligned_cols=260 Identities=13% Similarity=0.079 Sum_probs=139.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC--------
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 523 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-------- 523 (732)
.|+++.|+++..-|++|...|.|.||.....+... ......-....|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999875432221 000011111122110 00111122233321
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC---------CeeEEEEeC-----CC
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRFQP-----RL 589 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~---------~i~~v~~sp-----~g 589 (732)
+-.+...+....++|++++.+.-| +++.|+.+|.+.|.|++....+..-.... .++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112344455567899999998654 88899999999999999888877644322 367777762 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-CeE----EEEEcCCCCCEEEEE-EeCC---------------------CCEEEEE
Q 004737 590 ---GRILAAAIENYISILDVE--T-QVC----RLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 637 (732)
Q Consensus 590 ---~~ll~~s~dg~I~IwDl~--t-~~~----i~~l~~h~~~V~sla-~spd---------------------g~~Lasg 637 (732)
-.+++|+..|.+.+|.+. . +.. ......+.++|..|+ |+.+ ..+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358888999999999764 1 211 112224667776665 3221 1267777
Q ss_pred eCCeEEEEECCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc----CCCCe
Q 004737 638 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 707 (732)
Q Consensus 638 sDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f-----spdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~----h~~~V 707 (732)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+ ...- +...+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7999999998876 344333322223334445 235677888899999999999998877 2222 12245
Q ss_pred eEEEEeCCCCEEEEEEC
Q 004737 708 SSLAASTVNGMVASASH 724 (732)
Q Consensus 708 ~sla~spdg~~LaSgs~ 724 (732)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56777888887766554
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.25 E-value=0.00095 Score=71.24 Aligned_cols=256 Identities=9% Similarity=0.101 Sum_probs=157.1
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC----------CCeEEEEecCCCCceeEEeecC--C----
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 535 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~s~~~~~~~l~~h--~---- 535 (732)
+.|.|+|.++++.+-.+... ..-.+..+||++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47999999999988776532 2334678999999887642 3479999999864322221111 1
Q ss_pred cceEEEEEcCCCCcEEEE-EeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 004737 536 TTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 613 (732)
Q Consensus 536 ~~V~sl~fspdg~~llaS-gs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~~~i~ 613 (732)
.....+.++.+++.+++. .+-.-.|.|.|+..++.+..+...+...-.-+.+ ..|.+.|.||.+..+.+. .++...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeE
Confidence 122345677777665543 2344568888999998888887655433333332 468899999999988887 444432
Q ss_pred E----EcCCCCCEE-EEEEeCCC-CEEEEEeCCeEEEEECCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 004737 614 K----LQGHKNQVH-SVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 677 (732)
Q Consensus 614 ~----l~~h~~~V~-sla~spdg-~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~----------~~~I~sl~fspdg~~ 677 (732)
+ |.....++. .-++...+ .+++...+|.|+-.|+..... .....+... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2 212222222 33444444 455544499999999877532 222222211 122344688877766
Q ss_pred EEEEEcC--------C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEeC
Q 004737 678 LLVIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 732 (732)
Q Consensus 678 L~sgs~d--------g--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWD 732 (732)
|++.-.. + .|.+||+.+++.+....-...+.+|..+.+.+ +|++.+ .++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6664321 1 68899999999984444445688999998876 666554 578999986
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00037 Score=80.42 Aligned_cols=195 Identities=13% Similarity=0.167 Sum_probs=136.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc-eEEEEEcCCCCeEEEEeCCC-----eEEEEecCCCC
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 525 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~I~IWDl~s~~ 525 (732)
.|+| |++.+..+|.|+.+|.|.+.+- ..+.++.+..+... |..+-...+..+|++.+.|+ .|+|||++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 4567889999999999998873 44555777777766 44444444446888877765 58999987431
Q ss_pred -----cee---EEee----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE--CC-C--CeeeeEEeccCCeeEEEEeCC
Q 004737 526 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--IN-N--GSCAGVFKCQSGATQMRFQPR 588 (732)
Q Consensus 526 -----~~~---~~l~----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD--l~-t--~~~i~~~~~~~~i~~v~~sp~ 588 (732)
.++ +.+. ....++.+++++.+ -..++.|-.+|.|.++. +. . .+.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 112 2221 13467888999887 56677888899999884 21 1 122233345678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737 589 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 650 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~ 650 (732)
+..++.+.....|.+|.+....+ ...+..|...+.|..|++...-++++++..|.+||....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88866666678899999885442 444677888999999987666577777778999998754
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.23 E-value=0.00072 Score=77.57 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=131.2
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCc--eEEEEEcC--CCCeEEEEe---------CCCeEEEEecCCCCceeE
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~I~IWDl~s~~~~~~ 529 (732)
..++.++.++.|+.+|.++++.+-.+...... -..+.-+| .+..++.++ .++.|..+|..+++...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57778888999999999999998776543221 01111111 124455543 367899999998875433
Q ss_pred EeecCCc-------------------ce-EEEEEcCCCCcEEEEEeCCC------------------cEEEEECCCCeee
Q 004737 530 TFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 571 (732)
Q Consensus 530 ~l~~h~~-------------------~V-~sl~fspdg~~llaSgs~Dg------------------~I~iWDl~t~~~i 571 (732)
....... .| ....+.+.+. +++.+..++ .|.-+|+++++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2221110 01 1233343333 444554444 7999999999999
Q ss_pred eEEeccCC-e------eEEEEe----CCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737 572 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 572 ~~~~~~~~-i------~~v~~s----p~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg 637 (732)
..+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...++.+| +.+++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 87753211 1 111111 1232 4777888999999999999988765421 11123333 2221111
Q ss_pred ------------------eCCeEEEEECCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 638 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 638 ------------------sDg~I~IWDl~t~~~~~~i~~~~~~~--------~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
.+|.|.-+|..+++ .+-...... .+.......-.+..|++++.++.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 14677777887773 332222110 1111111122456788999999999999
Q ss_pred CCCCeEE
Q 004737 692 MTENKTL 698 (732)
Q Consensus 692 l~t~~~~ 698 (732)
.++++.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=7.3e-05 Score=83.63 Aligned_cols=188 Identities=12% Similarity=0.203 Sum_probs=124.4
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC--eE
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 601 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg--~I 601 (732)
...+..-...+..-+|+|++..+.+..-.. ..++++|+.+++........+......|+|+|++++.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444554556788889999988776654333 3599999999988888877777888999999999887665 44 68
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
+++|+..+.... +....+.-..=.|+|||++|+..+ .| .|.+++...... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888988876333 443333344678999999999888 44 577777766532 222222222237789999999
Q ss_pred EEEEEcC-C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEE
Q 004737 678 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 720 (732)
Q Consensus 678 L~sgs~d-g--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~La 720 (732)
|+..+.. + .|.++|+.++.......+......-.|.++++.|+
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence 9888854 3 47777777666333333333333344445444333
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.19 E-value=0.0014 Score=71.99 Aligned_cols=246 Identities=17% Similarity=0.175 Sum_probs=141.3
Q ss_pred eeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC-----------------
Q 004737 429 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----------------- 491 (732)
Q Consensus 429 ~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h----------------- 491 (732)
.-++++.++. +..+......+....|||||+++|... ++.|.+++..++.....-...
T Consensus 25 y~i~d~~~~~----~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 25 YYIYDIETGE----ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEETTTTE----EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred EEEEecCCCc----eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 3456666653 222333367789999999999999886 589999998877544322111
Q ss_pred CCceEEEEEcCCCCeEEEEeCCC------------------------------------eEEEEecCCCCceeEE-e---
Q 004737 492 TQWITDVRFSPSLSRLATSSADR------------------------------------TVRVWDTENPDYSLRT-F--- 531 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg------------------------------------~I~IWDl~s~~~~~~~-l--- 531 (732)
-+.-..+-|+||+++||....|. .+.|+|+.+++..... .
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 11235678999999998764431 1334455444321111 1
Q ss_pred ecCCcceEEEEEcCCCCcEEEE-EeCC---CcEEEEECCCCeeeeEEeccCC-----eeEEEEe-CCCCEEEEEE-cCC-
Q 004737 532 TGHSTTVMSLDFHPSKEDLLCS-CDNN---SEIRYWSINNGSCAGVFKCQSG-----ATQMRFQ-PRLGRILAAA-IEN- 599 (732)
Q Consensus 532 ~~h~~~V~sl~fspdg~~llaS-gs~D---g~I~iWDl~t~~~i~~~~~~~~-----i~~v~~s-p~g~~ll~~s-~dg- 599 (732)
..-...+..+.|.+++..+++. ...+ ..+.++|..++++...+..... .....+. +++..++..+ .+|
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1234457888999887634433 3333 2466778877766544432221 2355555 6666655444 456
Q ss_pred -eEEEEECCCCeEEEEEcCCCCCEEE-EEEeCCCCEEEEEe--CC----eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 600 -YISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 600 -~I~IwDl~t~~~i~~l~~h~~~V~s-la~spdg~~Lasgs--Dg----~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
.|++++...+... .+....-.|.. +.|+++++.|+..+ ++ .|+..++..+ ..+..+.+....-..+.|
T Consensus 260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~ 335 (353)
T PF00930_consen 260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASF 335 (353)
T ss_dssp EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE
T ss_pred cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEE
Confidence 5777777777644 55545566755 67888877665444 22 5555666611 344455544444479999
Q ss_pred eCCCCEEEEEEc
Q 004737 672 HPTFPSLLVIGC 683 (732)
Q Consensus 672 spdg~~L~sgs~ 683 (732)
||++++++....
T Consensus 336 Spdg~y~v~~~s 347 (353)
T PF00930_consen 336 SPDGKYYVDTYS 347 (353)
T ss_dssp -TTSSEEEEEEE
T ss_pred CCCCCEEEEEEc
Confidence 999998876554
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.18 E-value=0.00033 Score=83.51 Aligned_cols=231 Identities=14% Similarity=0.195 Sum_probs=135.2
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
..+.|.++.|.-+..-++.+..+|.|.+-|..+... .....-...|.+++|+||...+. ..+...+|.+-+ .+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEe-ccccc
Confidence 346899999999999999999999999998887553 33344467899999999975544 444455555433 22222
Q ss_pred eeEEec------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-----C
Q 004737 571 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D 639 (732)
Q Consensus 571 i~~~~~------~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-----D 639 (732)
+..... .+....+-|-.....| - +..|.....+................-++|+|--||.|+++.. +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf-r-gs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF-R-GSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee-e-cchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 221111 1112222222211111 0 1111111111111110000001122335799999999999843 4
Q ss_pred -CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeE---E-EEccCCCCeeEEE
Q 004737 640 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKT---L-TLSAHDKLVSSLA 711 (732)
Q Consensus 640 -g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~---dg~I~IwDl~t~~~---~-~~~~h~~~V~sla 711 (732)
..|+|||-. + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+.-+. . .+......|..++
T Consensus 221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 689999976 3 111122223344578899999998888754 44798987544322 1 2333344599999
Q ss_pred EeCCCCEEEE---EECCCeEEEe
Q 004737 712 ASTVNGMVAS---ASHDKCVKIW 731 (732)
Q Consensus 712 ~spdg~~LaS---gs~DG~I~IW 731 (732)
|+.++.+|++ +.....|++|
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred ecCCCCceeeeecccccceEEEE
Confidence 9999998887 4444559998
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=3.6e-05 Score=87.76 Aligned_cols=261 Identities=10% Similarity=0.083 Sum_probs=149.0
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 454 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 454 ~~lafSpdg~~Lasgs~----Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
+-.+|+|...++|+++- .|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. ..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 34688898888888763 47888884 4555433221 122356799999988899998999999999887553 44
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---Ee--ccCC--eeEEEEeCCCC------EEEEEE
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FK--CQSG--ATQMRFQPRLG------RILAAA 596 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~---~~--~~~~--i~~v~~sp~g~------~ll~~s 596 (732)
....|..+|..+.|+++|.. ++++..-|.|.+|.......+.. +. .... ..|...++++. ..++++
T Consensus 96 v~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 55679999999999999855 45999999999998763222211 11 1222 34445555532 233444
Q ss_pred cCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 597 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 597 ~dg~I~-IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
.+..+- .++.+......... |.+ .|+|..++.+. +|+|+..|-.. .+....+... . ..+.|.+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ksg-------v~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS-~-vQmLf~~~ 240 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KSG-------VPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDS-E-VQMLFMGY 240 (1416)
T ss_pred chhhhcccccCccchhhcccc-ccC-------CCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccc-h-HHHHHhcc
Confidence 444333 33333211111111 111 25666666666 88888887443 2222221111 1 11222222
Q ss_pred CCEEEEEEcCCeEEEEEC-CCCe---------------------------EE----EE-ccCCCCeeEEEEeCCCCEEEE
Q 004737 675 FPSLLVIGCYETLELWNM-TENK---------------------------TL----TL-SAHDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl-~t~~---------------------------~~----~~-~~h~~~V~sla~spdg~~LaS 721 (732)
...+++...+-.+.+|-+ .+|. .+ .+ ......++|++++..+..|+.
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 222222222222222111 0110 00 00 012456999999999999999
Q ss_pred EECCCeEEEeC
Q 004737 722 ASHDKCVKIWK 732 (732)
Q Consensus 722 gs~DG~I~IWD 732 (732)
|...|.|.+|.
T Consensus 321 gt~~gnv~~w~ 331 (1416)
T KOG3617|consen 321 GTKEGNVTIWL 331 (1416)
T ss_pred cccCCcEEEee
Confidence 99999999994
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00019 Score=82.07 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=132.8
Q ss_pred EcCCCCEEEE-EECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC----eEEEEecCCCCceeEEee
Q 004737 458 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 532 (732)
Q Consensus 458 fSpdg~~Las-gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg----~I~IWDl~s~~~~~~~l~ 532 (732)
+++||+.+.. .-..+.+.+.|.++.+....+.-.. ....+.++++|+++++.+.+. ++..-+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 3445554422 2234667778888877776665433 446778999999998887432 333333322111 01110
Q ss_pred cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----CeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEEC
Q 004737 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 606 (732)
Q Consensus 533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-----~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl 606 (732)
- ..+ ..+.++|+..++ .++.|.++|..+ .+.+..+........+.++|||+++++++. ++.|.|+|+
T Consensus 278 i--~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred h--HHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 0 000 023446665554 267899999998 567777888888999999999999888776 789999999
Q ss_pred CCCeE------------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC------CC-ceeEEEeecCCCce
Q 004737 607 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG------SK-GECIHELSCTGNKF 666 (732)
Q Consensus 607 ~t~~~------------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~------~~-~~~i~~~~~~~~~I 666 (732)
.+.+. +.+..--. .-...+|+++|..+.+.. |..|..||+... +. ...+..+..|..+.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 23333222 234578999998777777 999999998761 11 13444444444333
Q ss_pred EEE-----EEeCCCCEEEEEE
Q 004737 667 HSC-----VFHPTFPSLLVIG 682 (732)
Q Consensus 667 ~sl-----~fspdg~~L~sgs 682 (732)
... .-.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 222 2367777777654
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00073 Score=74.99 Aligned_cols=220 Identities=13% Similarity=0.110 Sum_probs=154.9
Q ss_pred eEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCcee
Q 004737 453 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 528 (732)
Q Consensus 453 V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~~~ 528 (732)
-.+++++++++.+ ++...++.|.+.|..+.+......-.. ....++|+++++.++.+.. +++|.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 4467888888854 444556899999988877776664333 5678999999988777765 6888888888876544
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EEeccCCeeEEEEeCCCCEEEEEEcC---Ce
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 600 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~ll~~s~d---g~ 600 (732)
. ...-..+ ..+++.|++..++++-..++.|.+.|.......+ ..........+.+++++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3333334 8999999998888777789999999987666553 23334456789999999987776664 59
Q ss_pred EEEEECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 601 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
+.+.|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999999877665221112 566789999999998886 5789999988763322222222223345555655544
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00025 Score=79.66 Aligned_cols=221 Identities=11% Similarity=0.139 Sum_probs=121.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE-ecCCCCc
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 526 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW-Dl~s~~~ 526 (732)
...-....+.++|+|+++++++ ||...||.....+.... +.-...+|... ..+|+-...++|.|+ ++++..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc-
Confidence 3444578899999999999855 78888888555444332 33456789884 457777778899996 443322
Q ss_pred eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 606 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl 606 (732)
.+.+.. ...+..|-. |..++ ..+ ++.|.+||+.+++.++.+.... +..+.|++++.+++..+.+ .++|++.
T Consensus 102 -~k~i~~-~~~~~~If~---G~LL~-~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GNLLG-VKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -T------SS-EEEEE----SSSEE-EEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred -ceEEcC-CcccceEEc---CcEEE-EEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 122221 112333333 44444 444 4489999999999999998643 8999999998888887754 5666554
Q ss_pred CCC-----------eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 607 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 607 ~t~-----------~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
+.. ..+..+......|.+.+|..+ .++-.....|+. +..+ ....+.....+++-+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence 322 022222222568999999877 444444337777 3333 222333345678888888877
Q ss_pred CEEEEEEcCCeEEEEECC
Q 004737 676 PSLLVIGCYETLELWNMT 693 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~ 693 (732)
..+++...++.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 888888888888887664
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=2.4e-05 Score=89.10 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEe
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF 531 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l 531 (732)
+++++|+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..++++..-|.|.+|..+--. .....+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 6679999998889999999999999998877777778899999999999999999999999999999887322 111122
Q ss_pred ecCC--cce--EEEEEcCCCCcE-----EEEEeCCCcEE-EEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 532 TGHS--TTV--MSLDFHPSKEDL-----LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 532 ~~h~--~~V--~sl~fspdg~~l-----laSgs~Dg~I~-iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
..|. ..+ +|...+++++.+ +++.+++..+- .++.+.....+.... .-.|+|..+++++.+|+|
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~GtV 214 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGTV 214 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCceE
Confidence 2232 223 344445553322 22333333332 333321111111111 114677888899999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECC----------------CCCC-c--------ee
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG----------------SGSK-G--------EC 655 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~----------------t~~~-~--------~~ 655 (732)
+..|-.. ++....+.. +. ..+-|.+...-|++.- +-++.++-+. .+.. . -.
T Consensus 215 yyvdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv 291 (1416)
T KOG3617|consen 215 YYVDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV 291 (1416)
T ss_pred EEEcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence 8887543 222222211 00 1111222211111111 1111111110 0000 0 00
Q ss_pred EE---E-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EEEEc---cCCCCeeEEEEeCCCCEEE
Q 004737 656 IH---E-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTLS---AHDKLVSSLAASTVNGMVA 720 (732)
Q Consensus 656 i~---~-~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------~~~~~---~h~~~V~sla~spdg~~La 720 (732)
+. . -...+..+.|++++..+..++.+...|.+.+|--.... ...+. ...+.|+.+.|.|--..++
T Consensus 292 Lr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 292 LRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred ccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence 00 0 00134678999999999999999999999999543221 11222 3456899999988655444
Q ss_pred EE
Q 004737 721 SA 722 (732)
Q Consensus 721 Sg 722 (732)
.-
T Consensus 372 vn 373 (1416)
T KOG3617|consen 372 VN 373 (1416)
T ss_pred hh
Confidence 33
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0012 Score=70.43 Aligned_cols=241 Identities=12% Similarity=0.131 Sum_probs=153.8
Q ss_pred ceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCC----CeEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEE
Q 004737 412 NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS----KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVK 485 (732)
Q Consensus 412 ~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~----~V~~lafSpdg~~Lasgs--~Dg~I~VWd~~t~~~~ 485 (732)
..+.|++......+.-++.+||..+-....++-.-.+|.- ....+.++.||+++++.- --..|.|.|+...+.+
T Consensus 52 ~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 52 VAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred EEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCcee
Confidence 3456777777788888999999999887777766555333 234578999999887754 3468999999999998
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE----eecCCcce-EEEEEcCCCCcEEEEEeCCCcE
Q 004737 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHSTTV-MSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~----l~~h~~~V-~sl~fspdg~~llaSgs~Dg~I 560 (732)
..+... ++..-.-+ ....|.+-|.||.+.-..++........ |....+++ ..-.+...+..+++ -+.+|.|
T Consensus 132 ~ei~~P-GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v 207 (342)
T PF06433_consen 132 GEIDTP-GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNV 207 (342)
T ss_dssp EEEEGT-SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEE
T ss_pred eeecCC-CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEE
Confidence 877532 22211112 2346888899999999999854433321 11112222 23334434344443 5568888
Q ss_pred EEEECCCCeeee--EEec-----------cCCeeEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEEEcC
Q 004737 561 RYWSINNGSCAG--VFKC-----------QSGATQMRFQPRLGRILAAAIEN----------YISILDVETQVCRLKLQG 617 (732)
Q Consensus 561 ~iWDl~t~~~i~--~~~~-----------~~~i~~v~~sp~g~~ll~~s~dg----------~I~IwDl~t~~~i~~l~~ 617 (732)
+-.|+....... .+.. .++..-+++++..++|++.-..| .|.+||+.+++.+.++..
T Consensus 208 ~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l 287 (342)
T PF06433_consen 208 YSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL 287 (342)
T ss_dssp EEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred EEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC
Confidence 888887654322 2211 13345588888777777654322 589999999999998873
Q ss_pred CCCCEEEEEEeCCCC-EEEEEe--CCeEEEEECCCCCCceeEEEee
Q 004737 618 HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 618 h~~~V~sla~spdg~-~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
..++.+|..+.+.+ +|++.+ ++.|.+||..++ +.++.+.
T Consensus 288 -~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 288 -EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp -EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred -CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence 34677999998876 555544 789999999998 5555554
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=0.0041 Score=63.11 Aligned_cols=143 Identities=11% Similarity=0.011 Sum_probs=99.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 541 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl 541 (732)
..+++.|+..+.+.--|..+|+.+..-. -...|.+-+.- -|++++.|++.|.+++.+..++......... +.|.+-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccc
Confidence 3478888999999999999988775432 22233333322 3678999999999999999998653332221 223222
Q ss_pred -EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-eEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 542 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQ 609 (732)
Q Consensus 542 -~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-~~v~~sp~g~~ll~~s~dg~I~IwDl~t~ 609 (732)
...++ ..+++.++.|++.+..|.++..++...+..+.+ .+-++.+-...++++...|.+.-...+..
T Consensus 99 a~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCC-CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 23344 468889999999999999999999998877664 34566775677777777777766665554
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.01 E-value=0.0011 Score=71.60 Aligned_cols=210 Identities=13% Similarity=0.096 Sum_probs=119.7
Q ss_pred eEEEEecCCCCceeEEee-cCCcceEEEEE---cCC---CCcEEEEEeC----------CCcEEEEECCCC-----e--e
Q 004737 515 TVRVWDTENPDYSLRTFT-GHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----S--C 570 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~-~h~~~V~sl~f---spd---g~~llaSgs~----------Dg~I~iWDl~t~-----~--~ 570 (732)
.|++.|..+... +..+. .....+++++. ..+ ...+++.|.. .|.|.++++... + .
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 577777776553 22221 22334554443 222 1456655532 288999999884 2 3
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737 571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~-~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl 647 (732)
+......++|.+++-. +++ ++++.++.|.+|++...+ ....-. .....+.++... +.+|++|+ ...|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3444567888888876 345 555556999999998776 333222 133466676665 55888888 565666644
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eEE--EEccCCCCeeEE---EEe
Q 004737 648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---AAS 713 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-------~--~~~--~~~~h~~~V~sl---a~s 713 (732)
......-...........++++.|-+++..++++..+|.|.++.... + +.. ........|+++ ++.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 43211011222233456688888986667899999999999987753 2 233 223345667777 444
Q ss_pred CC--C------CEEEEEECCCeEEE
Q 004737 714 TV--N------GMVASASHDKCVKI 730 (732)
Q Consensus 714 pd--g------~~LaSgs~DG~I~I 730 (732)
|. + ..++.++.+|.|.+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 41 2 24788889998863
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.00 E-value=0.0063 Score=64.05 Aligned_cols=224 Identities=14% Similarity=0.147 Sum_probs=131.0
Q ss_pred CCCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE--------
Q 004737 460 PDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 530 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~-------- 530 (732)
..++.|+.|..+| |.+|+... .+..... +...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999888 99999833 3333332 233399999999877776664 699999998754322210
Q ss_pred -----eecCCcceEEEE--EcCCCCcEEEEEeCCCcEEEEECCC----C-eeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737 531 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINN----G-SCAGVFKCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 531 -----l~~h~~~V~sl~--fspdg~~llaSgs~Dg~I~iWDl~t----~-~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
.......+...+ -...+...++.+- ...|.+|.... . +..+.+.....+..++|.. +.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-C
Confidence 111223344444 1123344454444 55888887754 2 5667788888999999993 5555555 5
Q ss_pred CeEEEEECCCCeEEEEEcCC------------CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCce
Q 004737 599 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 666 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h------------~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I 666 (732)
....++|+.++.....+... ..++..+.. +++++|+ +.|..-.+.|.... ... ...+.-.. ..
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll-~~~~~g~fv~~~G~-~~r-~~~i~W~~-~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLL-CYDNIGVFVNKNGE-PSR-KSTIQWSS-AP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEE-EecceEEEEcCCCC-cCc-ccEEEcCC-ch
Confidence 55888899876544333211 123333333 3455665 44544444454332 111 12222222 34
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737 667 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 699 (732)
Q Consensus 667 ~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~ 699 (732)
..+++ ...+|++... +.|.||++.+++++.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3456666555 569999999998873
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.00 E-value=0.0027 Score=68.69 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=126.3
Q ss_pred CcEEEEEcCCCeEEEEecc-CCCceEEEE---EcCC----CCeEEEEeC----------CCeEEEEecCCC-----Ccee
Q 004737 472 KKAVLWCTESFTVKSTLEE-HTQWITDVR---FSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 528 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~-h~~~V~~l~---fspd----g~~Lasgs~----------Dg~I~IWDl~s~-----~~~~ 528 (732)
..|+|.|..+.+.+..+.- ....+++++ |..+ ..+|++|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3688899888887766532 223445443 4332 467777753 289999999884 2222
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 607 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~ 607 (732)
.......++|++++-. +..++++. ++.|.+|++...+ ....-..+..+........+++++++.....|.++..+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2334457889999877 23455444 5789999998877 55555544444444444446799999988888877443
Q ss_pred C-CeEEEEE--cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC-------C-CceeEEEeecCCCceEEE---EEe
Q 004737 608 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH 672 (732)
Q Consensus 608 t-~~~i~~l--~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~-------~-~~~~i~~~~~~~~~I~sl---~fs 672 (732)
. ...+..+ ......+++++|-.+++.++++. +|.|.++..... . ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 2 2222222 22455788999986667777777 899999987631 1 112222232 34556666 444
Q ss_pred C--CCC------EEEEEEcCCeEEEE
Q 004737 673 P--TFP------SLLVIGCYETLELW 690 (732)
Q Consensus 673 p--dg~------~L~sgs~dg~I~Iw 690 (732)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 5 222 48888889988743
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=0.00084 Score=67.96 Aligned_cols=151 Identities=12% Similarity=-0.018 Sum_probs=114.0
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004737 541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 620 (732)
Q Consensus 541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 620 (732)
+...++.+.+++.|+..+.+...|..+|+.+........+.+-+.- -+++++.|+..|.+++.+.+++.....+..-..
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3445666788889999999999999999988777666666655544 457899999999999999999977776653322
Q ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
--......+++.+|..++ |+..+..|.++. .++...+..++...+-++.|....|+++...|.|.--..+..
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 222344568899999999 999999999887 788888877777777788885555777777776555555444
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.97 E-value=3.9e-06 Score=93.33 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=127.8
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcC-CCCeEEEEe----CCCeEEEEec
Q 004737 451 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWDT 521 (732)
Q Consensus 451 ~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fsp-dg~~Lasgs----~Dg~I~IWDl 521 (732)
..+.|+++.-+. ..+++|..+|.|.+-.+..... .....+|...+++++|++ |.++||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 447788877644 4788999999999987764322 234467888999999998 566777763 3568999999
Q ss_pred CCCCc-eeE--Eee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc
Q 004737 522 ENPDY-SLR--TFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 522 ~s~~~-~~~--~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~ 597 (732)
.+.-. +.. .+. +-.....+++|..+ ..++.+|.....|.++|++........-....+..+.+.|-....++...
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 87511 111 111 23345668889865 56666888888999999983221111111123555667774444667777
Q ss_pred CCeEEEEEC-CCCe-EEEEEcCC----CCCEEEEEEeCCCC-EEEEEe--CCeEEEEECCC
Q 004737 598 ENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 649 (732)
Q Consensus 598 dg~I~IwDl-~t~~-~i~~l~~h----~~~V~sla~spdg~-~Lasgs--Dg~I~IWDl~t 649 (732)
||.|.+||. ++-+ ++..+... ...+..++|+|... .+++.. .++|+.||+..
T Consensus 216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 999999994 3322 22222211 22489999999643 455555 56999999864
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=2.6e-06 Score=94.71 Aligned_cols=198 Identities=18% Similarity=0.241 Sum_probs=136.1
Q ss_pred CCceEEEEEcCCC--CeEEEEeCCCeEEEEecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEe----CCCcEEEEE
Q 004737 492 TQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWS 564 (732)
Q Consensus 492 ~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs----~Dg~I~iWD 564 (732)
...+.|+++..+. -++++|..+|.|-+-.++..... .....+|...+++++|++-+...||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457777776643 47888999999999988765543 4566788899999999997777776663 356899999
Q ss_pred CCCC--eeeeEEe----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEeC-CCCEEEE
Q 004737 565 INNG--SCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLAS 636 (732)
Q Consensus 565 l~t~--~~i~~~~----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~sp-dg~~Las 636 (732)
+.++ .+..... ...+...++|..+.+.+++|.....+.++|++-... ...+ .+..+..+..+| .+.|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 2221111 224466888988888888888899999999984321 1111 344667788888 7889988
Q ss_pred EeCCeEEEEE-CCCCCCceeEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 004737 637 VSDELVRVWS-IGSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 693 (732)
Q Consensus 637 gsDg~I~IWD-l~t~~~~~~i~~~~~~----~~~I~sl~fspdg~~-L~sgs~d-g~I~IwDl~ 693 (732)
..||.|.+|| .+.-+ ..+..+... ...+..++|.|...- +++...| ++|++||+.
T Consensus 214 ~~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8899999999 43322 122222112 234889999996543 4444444 389999874
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.95 E-value=0.0083 Score=69.41 Aligned_cols=187 Identities=10% Similarity=0.024 Sum_probs=114.4
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceE---E-------EEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+..|++++.++.|+-+|..+|+.+-.+.... ..+. + +++ .+..++.++.|+.|...|.++++..-+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4477777778899999999999887664211 1111 1 122 2346777888999999999998854332
Q ss_pred eec-CC--cceEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCC----------------------
Q 004737 531 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 579 (732)
Q Consensus 531 l~~-h~--~~V~s-l~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~---------------------- 579 (732)
-.. +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 211 11 01111 1111 2 33443322 268999999999998866542110
Q ss_pred -----------eeEEEEeCCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEEcCCCCCE---------E
Q 004737 580 -----------ATQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQV---------H 623 (732)
Q Consensus 580 -----------i~~v~~sp~g~~ll~~s~d-----g-----------~I~IwDl~t~~~i~~l~~h~~~V---------~ 623 (732)
-..+.+.+..+.++.+..+ + .|.-.|+++++.+..+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0134777777777776632 2 68888999999887776422222 1
Q ss_pred EEEEeCCCC---EEEEEe-CCeEEEEECCCCCC
Q 004737 624 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 624 sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
-+.+..+|+ .++.+. +|.+++.|-++++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 222334665 566666 89999999998843
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.0038 Score=66.86 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=133.7
Q ss_pred EEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737 498 VRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 575 (732)
Q Consensus 498 l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~- 575 (732)
..|.++...| ++--..+.|.-|+..++.. +.+. +.+.+.++.....+..++ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 4577776644 4445578899999886653 3333 233445555444433444 55 3347778876665533222
Q ss_pred c-----cCCeeEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737 576 C-----QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 576 ~-----~~~i~~v~~sp~g~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs- 638 (732)
. ....+...+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 123567888999777665444 134666665 4555555555556668999999999888877
Q ss_pred -CCeEEEEECCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccCCCCeeEEE
Q 004737 639 -DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLA 711 (732)
Q Consensus 639 -Dg~I~IWDl~t--~~~~--~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~-~~~~h~~~V~sla 711 (732)
.+.|..|++.. +... ..........+..-.++...+|.+.+++...+ .|.+|+.. ++++ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 57888888763 2111 11222323445666788888898765555544 89999988 7666 5545557888999
Q ss_pred Ee-CCCCEEEEEE
Q 004737 712 AS-TVNGMVASAS 723 (732)
Q Consensus 712 ~s-pdg~~LaSgs 723 (732)
|- ++.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 85 3445444443
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00017 Score=80.54 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred eeeeecCCCceeEEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE
Q 004737 429 GRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 507 (732)
Q Consensus 429 ~r~wd~~~g~~~~~v~~l-~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L 507 (732)
..+++..... +..+... -.....|.|++++|+.+.|+.|+.||.|.+||...+..... ...-.++.++|+|+|.+|
T Consensus 238 ~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 238 SCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEE
Confidence 3455555442 2222222 24677899999999999999999999999999877643322 344567899999999999
Q ss_pred EEEeCCCeEEEEecCCCCceeEEeec
Q 004737 508 ATSSADRTVRVWDTENPDYSLRTFTG 533 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~~~~~l~~ 533 (732)
++|+..|.+.+||+.-.......+..
T Consensus 315 ~V~s~qGelQ~FD~ALspi~~qLlsE 340 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIKMQLLSE 340 (545)
T ss_pred EEEcCCceEEEEEeecCccceeeccc
Confidence 99999999999998755443444433
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.90 E-value=0.005 Score=64.81 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=124.4
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----------
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---------- 572 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~---------- 572 (732)
.++.|+.|+.+| +.++++.......+... ...|..+...++-+.+++.+ |+.++++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence 577899999998 89999943332223222 33499999998866666554 5999999987544333
Q ss_pred -----EEeccCCeeEEE--EeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Q 004737 573 -----VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 640 (732)
Q Consensus 573 -----~~~~~~~i~~v~--~sp~g~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~V~sla~spdg~~LasgsDg 640 (732)
.+....++..++ -...+...+++.....|.+|..... +....+. -...+.+++|. +..|+.+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 122223344444 2244556667777779998887653 3444444 45788999998 6678888777
Q ss_pred eEEEEECCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeE
Q 004737 641 LVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 709 (732)
Q Consensus 641 ~I~IWDl~t~~~~~~i~~~~~~----------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~s 709 (732)
...+.|+.++.. ..+...... ..++..+. -+++.+|++- +..-.+.|....... ....-...+.+
T Consensus 158 ~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 799999997643 222211111 12222223 3345555432 333333344332211 11122345566
Q ss_pred EEEeCCCCEEEEEECCCeEEEeC
Q 004737 710 LAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 710 la~spdg~~LaSgs~DG~I~IWD 732 (732)
+++. ..||+..+.+ .|.||+
T Consensus 234 ~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 234 VAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEE--CCEEEEECCC-EEEEEE
Confidence 6664 4577776654 488874
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.90 E-value=0.0042 Score=64.43 Aligned_cols=199 Identities=12% Similarity=0.168 Sum_probs=112.9
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 607 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~ 607 (732)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... +....+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4455566799999999988999999999999999975 7888877754 457888988775444444347899999883
Q ss_pred CC------eEEEEEc-----CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC--CCCceeEEEe------ecCCCceE
Q 004737 608 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 667 (732)
Q Consensus 608 t~------~~i~~l~-----~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t--~~~~~~i~~~------~~~~~~I~ 667 (732)
.. .....+. .+...+-.|+|++.+..|+.+. ..-..||.+.. ......+... ...-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111121 2445689999999877666666 54455665543 1111111111 11234578
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE---EEcc--C-----CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 668 SCVFHPTFPSLLVIGC-YETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 668 sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~---~~~~--h-----~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.+.++|....|++-+. ...|..+| .+|+.+ .+.. | -...-.|+|.++|+ |+..++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 8999998766555554 45888899 566655 2222 1 13578999999885 4445677666655
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.83 E-value=0.019 Score=59.65 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=114.1
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccC-CCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 443 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
...+.+-.+.|..++|.|+.+ ++++....+.|..++. +|+.+..+.-. .+-...|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345667667799999999766 5556666778888886 47777776433 35578899988887777666689999999
Q ss_pred cCCCCce--e---EEe-----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---CeeeeEEe---------ccC
Q 004737 521 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 578 (732)
Q Consensus 521 l~s~~~~--~---~~l-----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---~~~i~~~~---------~~~ 578 (732)
+...... . ..+ ..++..+..++|.+.++.++++.- .....+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 124556899999999888886544 44555665543 22221111 113
Q ss_pred CeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCC---------CCEEEEEEeCCCCEEEEEeCCeEEEE
Q 004737 579 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 645 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~---------~~V~sla~spdg~~LasgsDg~I~IW 645 (732)
.+..+.++|..+.+++-+. ...|.++| ..++.+..+.-.. ...-.|+|.++|++.++.--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4788999998888777666 56888889 5566554433221 24678999999977766555555554
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.82 E-value=0.012 Score=65.98 Aligned_cols=221 Identities=12% Similarity=0.071 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCeEEEE-eCCC----eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC----------C
Q 004737 494 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 558 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasg-s~Dg----~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D----------g 558 (732)
.+..++++||+++||.+ +..| .|+|+|+.+++.....+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999998866 3333 69999999976433333321 123499999988888777543 2
Q ss_pred cEEEEECCCCeee--eEEeccC--C-eeEEEEeCCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEcCCCCCEEE
Q 004737 559 EIRYWSINNGSCA--GVFKCQS--G-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 624 (732)
Q Consensus 559 ~I~iWDl~t~~~i--~~~~~~~--~-i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~-----~~i~~l~~h~~~V~s 624 (732)
.|++|.+.+.... ..+.... . ...+..+++++++++.... ..+++.|+... ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888775432 3443322 2 5578889999998876553 35888898874 333333323333334
Q ss_pred EEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-C--eEEEEECC-CCe
Q 004737 625 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-E--TLELWNMT-ENK 696 (732)
Q Consensus 625 la~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g--~I~IwDl~-t~~ 696 (732)
+... .+.+++... .+.|...++...........+..+...+.-..+...+.+|++...+ + .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 444444443 4477778888765322333444455543334444445555555444 3 79999999 554
Q ss_pred EEEEc-cCCCCeeEEEEeCCCC
Q 004737 697 TLTLS-AHDKLVSSLAASTVNG 717 (732)
Q Consensus 697 ~~~~~-~h~~~V~sla~spdg~ 717 (732)
...+. .-.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 44333 2334455555555544
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.052 Score=60.88 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=101.3
Q ss_pred cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce------eEEeecCCcceEEEEEcCC
Q 004737 473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHPS 546 (732)
Q Consensus 473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~------~~~l~~h~~~V~sl~fspd 546 (732)
.|.||+.. |+.+..+.-..+.|.++.|..+ ..|++...||.+++||+.. ... +....-....+....+...
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence 48999865 4555555433388999999875 4566677999999999863 220 1111111112222233323
Q ss_pred CCcEEEEEeCCCcEEEEECCCCe-eeeEE-eccC---------CeeE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737 547 KEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQS---------GATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLK 614 (732)
Q Consensus 547 g~~llaSgs~Dg~I~iWDl~t~~-~i~~~-~~~~---------~i~~-v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~ 614 (732)
| +++.. .++.|.+.+-.... ..+.+ .... .... ..++.+....+....++.+.+.+......
T Consensus 139 G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 139 G--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred C--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 3 33222 24444443222111 11111 1000 0111 23444444555555556666554332211
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCC
Q 004737 615 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 676 (732)
Q Consensus 615 l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~ 676 (732)
+. ..+++..|++||++++|+.-. +|.+.|.+..-. +.+.++... ......+.|.-+..
T Consensus 213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 22 246899999999999999888 789888876443 444444433 34556677766543
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.70 E-value=0.0036 Score=69.47 Aligned_cols=206 Identities=14% Similarity=0.121 Sum_probs=121.4
Q ss_pred eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe--cc------CCCceEEEEEcC-----CC-
Q 004737 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 504 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~------h~~~V~~l~fsp-----dg- 504 (732)
.|.++..++...++|++|+.|.=| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999888777652 22 345688898862 33
Q ss_pred --CeEEEEeCCCeEEEEecCC---CCceeE---EeecCCcceEEEEEc-CC-C-------------------CcEEEEEe
Q 004737 505 --SRLATSSADRTVRVWDTEN---PDYSLR---TFTGHSTTVMSLDFH-PS-K-------------------EDLLCSCD 555 (732)
Q Consensus 505 --~~Lasgs~Dg~I~IWDl~s---~~~~~~---~l~~h~~~V~sl~fs-pd-g-------------------~~llaSgs 555 (732)
-.+++|...|.+.+|.+.- +.+.+. ....+.++|..|..- .+ + +.+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 3688999999999998751 222221 122456777766632 22 1 12444444
Q ss_pred CCCcEEEEECCCCeeeeEEeccCC--eeEEEEe-----CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----CCEEE
Q 004737 556 NNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 624 (732)
Q Consensus 556 ~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~~s-----p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~----~~V~s 624 (732)
+..|+++...+.+...... ..+ ...+++. ..+..|++...+|.|++|.+..-+.+..+.-.. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 6789999998877765544 332 2233442 245667888899999999999988887766432 23445
Q ss_pred EEEeCCCCEEEEEeCCeEEEEEC
Q 004737 625 VCWNTSGEYLASVSDELVRVWSI 647 (732)
Q Consensus 625 la~spdg~~LasgsDg~I~IWDl 647 (732)
.+++++|+.++-.+...+.+|.+
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEE
Confidence 67788999888777655555544
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.69 E-value=0.084 Score=61.16 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=87.5
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEecc--CCC--ceEE-EEEcCCCCeEEEEe------CCCeEEEEecCCCCceeEEe
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~--~V~~-l~fspdg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l 531 (732)
..++.++.|+.|...|.++|+.+-.... +.. .+++ .... ++ .++++. .+|.|..+|.++++..-+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4677788899999999999999866542 111 1111 1111 34 444443 26899999999887533321
Q ss_pred ecC------------------------------CcceE-EEEEcCCCCcEEEEEeC----CC-----------cEEEEEC
Q 004737 532 TGH------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSI 565 (732)
Q Consensus 532 ~~h------------------------------~~~V~-sl~fspdg~~llaSgs~----Dg-----------~I~iWDl 565 (732)
... ...++ .+.+.|..+.+++..+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 111 01111 23555553333332222 12 5777899
Q ss_pred CCCeeeeEEeccC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEE
Q 004737 566 NNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 612 (732)
Q Consensus 566 ~t~~~i~~~~~~~----------~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i 612 (732)
++|+....+.... ...-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999887776311 112233334555 5668888999999999999876
No 361
>PRK10115 protease 2; Provisional
Probab=97.68 E-value=0.1 Score=62.50 Aligned_cols=237 Identities=11% Similarity=0.003 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC------CeEEEEec
Q 004737 453 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 521 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl 521 (732)
+..+.|+|||++|+.+... ..|+|.|+.+++.+...-.... ..++|.+|++.|+....+ ..|..|++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678999999998876432 4688889988764322211221 459999998877665442 36788888
Q ss_pred CCCCc-eeEEeecCCcceE-EEEEcCCCCcEEEEEe--CCCcEEEEECC--CCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737 522 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 522 ~s~~~-~~~~l~~h~~~V~-sl~fspdg~~llaSgs--~Dg~I~iWDl~--t~~~i~~~~~~~~i~~v~~sp~g~~ll~~ 595 (732)
.++.. ....+........ .+..+.++..+++.+. .++.+.+|+.. .+.....+.....+..-.... +..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87632 2233443333333 2233336666665443 34679999853 333322333323322211222 3445444
Q ss_pred EcC----CeEEEEECCC-CeEEEEEcCC-C-CCEEEEEEeCCCCEEEEEe-CCe--EEEEECCCCCCceeEEEee-cCCC
Q 004737 596 AIE----NYISILDVET-QVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGN 664 (732)
Q Consensus 596 s~d----g~I~IwDl~t-~~~i~~l~~h-~-~~V~sla~spdg~~Lasgs-Dg~--I~IWDl~t~~~~~~i~~~~-~~~~ 664 (732)
+.. ..|...++.. ++.. .+..+ . ..|..+.+.. +.++++.. ++. +.+++.... .+..+. ....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~ 359 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA 359 (686)
T ss_pred EcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence 432 2455556552 2222 23334 3 3678888873 33444444 664 555554322 222222 1122
Q ss_pred ceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCeEE
Q 004737 665 KFHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 698 (732)
Q Consensus 665 ~I~sl~fs--pdg~-~L~sgs~d---g~I~IwDl~t~~~~ 698 (732)
.+..+.++ +++. .++..++. ..++.||+.+++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 23333344 3443 34333332 38999998877543
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0072 Score=71.75 Aligned_cols=141 Identities=9% Similarity=0.105 Sum_probs=96.5
Q ss_pred CeEEEE-eCCCeEEEEecCCCCceeEEeecCCcc-eEEEEEcC-----CCCcEEEEEeCCCcEEEEECCCCe--eee---
Q 004737 505 SRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG--- 572 (732)
Q Consensus 505 ~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~h~~~-V~sl~fsp-----dg~~llaSgs~Dg~I~iWDl~t~~--~i~--- 572 (732)
++|+.- .....|+-.|++.++ .+..+..|... |..++-.. .....+ .|-.+..|..||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 345788999999887 46777766543 54443221 112233 56668889999998632 221
Q ss_pred -EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECC
Q 004737 573 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 648 (732)
Q Consensus 573 -~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~ 648 (732)
.+.......|++-+.+ ++|++|+.+|.|++||--..+....+.+-..+|.+|+.+.||++|++.++..|.+++..
T Consensus 572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred cccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 2222334566665554 88999999999999995443444456667889999999999999999999999999863
No 363
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.024 Score=63.52 Aligned_cols=190 Identities=10% Similarity=0.108 Sum_probs=99.7
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----CCeeEE----EE
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM----RF 585 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-----~~i~~v----~~ 585 (732)
.|+||+..... +..+.-..+.|.++.|..+ +.++ .-..||.+++||+. |+. .+... ..+... .+
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence 47777766432 2222222278999999886 4555 44469999999987 333 22211 112111 11
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe-EEEEE---cCCCC------CEEE-EEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737 586 QPRLGRILAAAIENYISILDVETQV-CRLKL---QGHKN------QVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 586 sp~g~~ll~~s~dg~I~IwDl~t~~-~i~~l---~~h~~------~V~s-la~spdg~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
..+.+ +++...++.|++..-.... ....+ ..... .+.. ..++.+..+.+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 22223 4444455555554332221 11111 11000 0000 22344444444444 445554443221
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeEEEEeCCCCEE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~sla~spdg~~L 719 (732)
..+ ...+++..+++||++++++.-..+|.+.++...-.+.+ .+. .-......+.|+-++..+
T Consensus 211 ---~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 211 ---KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred ---ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 011 12468999999999999999999999999876655544 222 224566788887665433
No 364
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.53 E-value=0.095 Score=57.77 Aligned_cols=221 Identities=10% Similarity=0.096 Sum_probs=109.3
Q ss_pred CCCEEEEEE-CCCcEEEEEcCC----CeEEEEecc---CC----CceEEEEEcCCCCeEEEEeC------CCeEEEEecC
Q 004737 461 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 522 (732)
Q Consensus 461 dg~~Lasgs-~Dg~I~VWd~~t----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~I~IWDl~ 522 (732)
+.++|+..+ ..+.|+|+|+.+ -+..++++. +. ..-..+..-|+|.+++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999873 345555542 11 12233445578888887632 2467777777
Q ss_pred CCCceeEEeec---CCcceEEEEEcCCCCcEEEEEeC--------------------CCcEEEEECCCCeeeeEEeccCC
Q 004737 523 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKCQSG 579 (732)
Q Consensus 523 s~~~~~~~l~~---h~~~V~sl~fspdg~~llaSgs~--------------------Dg~I~iWDl~t~~~i~~~~~~~~ 579 (732)
+.+. ...... ....-..+-|.|.. ++++|... ..++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6442 222222 12234566677763 45545532 35799999999999999986532
Q ss_pred ---eeEEEEe--CCCCEEEEEEc-CCeEEEEEC-CCC----eEEEEEcCC-----------------CCCEEEEEEeCCC
Q 004737 580 ---ATQMRFQ--PRLGRILAAAI-ENYISILDV-ETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG 631 (732)
Q Consensus 580 ---i~~v~~s--p~g~~ll~~s~-dg~I~IwDl-~t~----~~i~~l~~h-----------------~~~V~sla~spdg 631 (732)
+..+.|. |+..+-++++. ...|..|-- +.+ +.+..+... ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 4456664 44455444443 445554433 433 222223211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEECCCCCCceeEEEeecC----------------CCceEEEEEeCCCCEEEEEEc
Q 004737 632 EYLASVS--DELVRVWSIGSGSKGECIHELSCT----------------GNKFHSCVFHPTFPSLLVIGC 683 (732)
Q Consensus 632 ~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~----------------~~~I~sl~fspdg~~L~sgs~ 683 (732)
++|+.++ +|.|+.||+......+.+..+..- .+...-+..|-||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 999999999998776666554321 122367889999999888753
No 365
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.45 E-value=0.05 Score=59.39 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=120.9
Q ss_pred EcCCCeEEEEeccCCCce-----EEEEEcCCCCeEEEEeC-CC--eEEEEecCCCCceeEEeecCC-cceEEEEEcCCCC
Q 004737 478 CTESFTVKSTLEEHTQWI-----TDVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 548 (732)
Q Consensus 478 d~~t~~~~~~l~~h~~~V-----~~l~fspdg~~Lasgs~-Dg--~I~IWDl~s~~~~~~~l~~h~-~~V~sl~fspdg~ 548 (732)
|..+|..+..+..+.... +.=+|.+||+.|+.++. || .+.+.|+.+++ +..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 667777777775443322 23367788877666554 55 56666777654 45555443 2233566778876
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEEeccCCee-EEEEe--CCCCEEEEEEc----------------------CCeEEE
Q 004737 549 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI----------------------ENYISI 603 (732)
Q Consensus 549 ~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~-~v~~s--p~g~~ll~~s~----------------------dg~I~I 603 (732)
.+++.- .+..|+..|+.+.+....+..+.... ...|. .++..++..-. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 666544 35689999999988777776655543 34443 34444332211 124777
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCC---e--EEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCC
Q 004737 604 LDVETQVCRLKLQGHKNQVHSVCWNTSGE-YLASVSDE---L--VRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFP 676 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~~V~sla~spdg~-~LasgsDg---~--I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~ 676 (732)
.|+.+++....+. ....+..+-|+|... +|+.|-+| . -|||-+++... ..+++.- .....+..=-|.|||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 7888887666555 567888999999654 45555554 2 37787765322 1222222 1233345557899998
Q ss_pred EEEEEEc-----CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 677 SLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 677 ~L~sgs~-----dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
.|...+. +..|.-+|..+++...+..- .....+-.++|++++|-=+.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 8776543 23677788888765533222 234456667888877654444
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.037 Score=59.36 Aligned_cols=208 Identities=13% Similarity=0.020 Sum_probs=126.1
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec----c-CCCceEE
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----E-HTQWITD 497 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~----~-h~~~V~~ 497 (732)
+.....+..|+..+|. ...+. +.+.+.++..-.++..|+++. .-+.+++.+++..+..+. + -....++
T Consensus 43 DI~~~~i~r~~~~~g~----~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 43 DILGGRIHRLDPETGK----KRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred eCCCCeEEEecCCcCc----eEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 3444455555555442 22222 233345555544555666553 456777777666533332 1 1245678
Q ss_pred EEEcCCCCeEEEEeC-----C----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-
Q 004737 498 VRFSPSLSRLATSSA-----D----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN- 567 (732)
Q Consensus 498 l~fspdg~~Lasgs~-----D----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t- 567 (732)
+...|+|.+.++... . ..-.||.++-.....+.+..+-..-+.|+|+||++.++++=+..+.|..|++..
T Consensus 116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred eeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence 889999887765544 1 112455555223345666665666789999999988877767778898888752
Q ss_pred -Cee---e-eEEe--ccCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEeC-CCCEEEEEe
Q 004737 568 -GSC---A-GVFK--CQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS 638 (732)
Q Consensus 568 -~~~---i-~~~~--~~~~i~~v~~sp~g~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~V~sla~sp-dg~~Lasgs 638 (732)
+.. . ..+. ..+..-.++...+|...+++...| .|.+|+.. ++.+..+.-....+++++|-- +.+.|++.+
T Consensus 196 ~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 196 TGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 111 1 1111 224466788888888776555554 99999999 888888877667888888853 445444444
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.41 E-value=0.33 Score=57.80 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=153.2
Q ss_pred CCCeEEEEEcCCC------CEEEEEECCCcEEEE-EcCCCeEEEEe----ccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737 450 TSKVESCHFSPDG------KLLATGGHDKKAVLW-CTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRV 518 (732)
Q Consensus 450 ~~~V~~lafSpdg------~~Lasgs~Dg~I~VW-d~~t~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I 518 (732)
...|.|+.++|-| +++++|..+..+.+. -..+...+... +.-...|....|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4679999999842 268888877655543 23333333222 122345666677777899999999999877
Q ss_pred EecCCCCceeEEe---ecCCcceEEEEEcCCCCcE------------------------------------------EEE
Q 004737 519 WDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDL------------------------------------------LCS 553 (732)
Q Consensus 519 WDl~s~~~~~~~l---~~h~~~V~sl~fspdg~~l------------------------------------------laS 553 (732)
|.++......... .-...++.--.|+..+... +++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 7655322111100 0011222222222222221 222
Q ss_pred EeCCCcEEEEECCCCe--eeeEEeccCCeeEEEEeCCCCEEEEEEc-----------C---CeEEEEECCCCeEEEEEcC
Q 004737 554 CDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI-----------E---NYISILDVETQVCRLKLQG 617 (732)
Q Consensus 554 gs~Dg~I~iWDl~t~~--~i~~~~~~~~i~~v~~sp~g~~ll~~s~-----------d---g~I~IwDl~t~~~i~~l~~ 617 (732)
+. .+.+++.-+..-. .++++........+++.+....+.+.+. + ..++++|-++.+.+...+-
T Consensus 690 ~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef 768 (1096)
T KOG1897|consen 690 AN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF 768 (1096)
T ss_pred ec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccc
Confidence 22 2334444333211 1223334455666777764333433332 1 1367777777665544332
Q ss_pred -CCC---CEEEEEEeCC-CCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737 618 -HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 618 -h~~---~V~sla~spd-g~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg 681 (732)
... .|.++.|..| +.++++|. .|.|.||.+......+.+++....+ .+.++..- +|+ +.+
T Consensus 769 ~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G-av~aL~~f-ngk--llA 844 (1096)
T KOG1897|consen 769 ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG-AVYALVEF-NGK--LLA 844 (1096)
T ss_pred cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc-ceeehhhh-CCe--EEE
Confidence 112 3445558777 67777664 2478888887754445555544333 33333221 344 444
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+-+..|++|++.+.+.+ ....|..++..+...-.+..|+.|+.=++|.+
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 55668999999998766 44477888999999888999999887666654
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.019 Score=67.02 Aligned_cols=185 Identities=12% Similarity=0.136 Sum_probs=105.0
Q ss_pred CceEEEEEcCCCCeEEEEe------CCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC--------
Q 004737 493 QWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-------- 556 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs------~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-------- 556 (732)
..+...+++|||+.++..- .|. .|.+++... .......+. ..+.-.|+|+|..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999999887765 244 455555432 222223332 37889999997665544322
Q ss_pred ---CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE---EECCCCeEE----EEEcC-CCCCEEEE
Q 004737 557 ---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVETQVCR----LKLQG-HKNQVHSV 625 (732)
Q Consensus 557 ---Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I---wDl~t~~~i----~~l~~-h~~~V~sl 625 (732)
.+.+.+.++..++... .....|..+.|+|||.+++... ++.|++ -....+... ..+.. -...+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 2344444555444333 3346799999999999988876 577777 444445311 11222 23346889
Q ss_pred EEeCCCCEEEEEeCC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737 626 CWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 688 (732)
Q Consensus 626 a~spdg~~LasgsDg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~ 688 (732)
.|..++.+++...++ .+...++.... .....-......+..++-+++ .+++...++.+.
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 999999876544444 34444444321 111011112345566666653 466666666443
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00084 Score=75.36 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceE-EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
-.|.-+.|+|.-.++|++..+|.|.+..+. ...+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++.....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 357789999999999999999999999988 777888887777787 999999999999999999999999998775333
Q ss_pred EeecCCcceEEEEEcC
Q 004737 530 TFTGHSTTVMSLDFHP 545 (732)
Q Consensus 530 ~l~~h~~~V~sl~fsp 545 (732)
....-...|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3333456778888863
No 370
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.35 E-value=0.26 Score=55.05 Aligned_cols=261 Identities=14% Similarity=0.143 Sum_probs=146.7
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEE--EE-e-ccCCCceEEEEEcC-----CCCeEEEEeCCCeEEEEecCCCC-------
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVK--ST-L-EEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------- 525 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~--~~-l-~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~IWDl~s~~------- 525 (732)
...|++|+..|.++||+....... .. + ..-..+|..+..-. +...||+ =.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998643311 11 1 23456788877642 2234444 467788888873211
Q ss_pred -ceeEEeecCC--cceEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737 526 -YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 526 -~~~~~l~~h~--~~V~sl~fsp----dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
..+.....|. .....+++-| .+..+++.=+.||.+.+|+-+.....+.+...--...++|.+....|++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 2334444444 2333444433 23678989999999999998765444444433335568888988999999999
Q ss_pred CeEEEEECCCC--------------------e---EEEEEcCCCCCEEEE---EEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737 599 NYISILDVETQ--------------------V---CRLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSGSK 652 (732)
Q Consensus 599 g~I~IwDl~t~--------------------~---~i~~l~~h~~~V~sl---a~spdg~~LasgsDg~I~IWDl~t~~~ 652 (732)
..|..|....- + +-.++. -.+.+..| .++.....|++-++..+.+.+-. + .
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~ 272 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S 272 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence 99988864210 0 001111 12233333 33334445666666667776653 2 1
Q ss_pred ceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEE---EeCCCCEEEEE
Q 004737 653 GECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVASA 722 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fsp----dg---~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla---~spdg~~LaSg 722 (732)
....+.+.. .+...+.|.. .+ ..+++++.++.+.||.=.+-..- ......+| ++. |..-...|++-
T Consensus 273 l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~Ws-A~l~~~PV-al~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 273 LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWS-AQLPHVPV-ALSVANFNGLKGLIVSL 348 (418)
T ss_pred EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEe-cCCCCCCE-EEEecccCCCCceEEEE
Confidence 122223322 2222222221 22 24889999999999853322211 11112222 333 33335688888
Q ss_pred ECCCeEEE
Q 004737 723 SHDKCVKI 730 (732)
Q Consensus 723 s~DG~I~I 730 (732)
+.+|.+.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88998865
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.34 E-value=0.19 Score=52.29 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=124.2
Q ss_pred eEEEEecc-CCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737 483 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 559 (732)
Q Consensus 483 ~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~ 559 (732)
+.+.++.. .......+.|..++.++-+.+.-| .|+.+|+.+++..........---..++... +.++.-.-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34444432 233455788877777777777665 7999999998754333332333334455553 456666778999
Q ss_pred EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----CCCEEEEEEeCCCCEE
Q 004737 560 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 634 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-----~~~V~sla~spdg~~L 634 (732)
..+||..+.+.+..+...+.-..++ .++..|+.......|+++|..+.+....+... -..++-+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877777777 55678888888899999999887666655432 2245667775 56555
Q ss_pred EEEe-CCeEEEEECCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 004737 635 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 635 asgs-Dg~I~IWDl~t~~~~~~i~~~~~---------------~~~~I~sl~fspdg~~L~sgs~d 684 (732)
+-.- ...|...|..++ .++..+.. ...-.+.++|.|....+++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 5555 778889999888 44443321 13457899999988877777653
No 372
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.26 E-value=0.061 Score=54.14 Aligned_cols=208 Identities=12% Similarity=0.099 Sum_probs=113.4
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcC-CCC-cEEEEEeCCCcEEEEECCC--CeeeeEEe-----
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKE-DLLCSCDNNSEIRYWSINN--GSCAGVFK----- 575 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fsp-dg~-~llaSgs~Dg~I~iWDl~t--~~~i~~~~----- 575 (732)
.++.+--..+.|+-||+...+.....+.+.. +.++.+-- ++. .+.+.++..-.|--||-.. ....+++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444567777799887654333333321 33333321 222 3444444444455677432 22222211
Q ss_pred -ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--------CCEEEEEEeCCCCEEEEEe--CCeEEE
Q 004737 576 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVRV 644 (732)
Q Consensus 576 -~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--------~~V~sla~spdg~~Lasgs--Dg~I~I 644 (732)
.......-..+|+|+++ .|.....=.++....+....-+.+|. .--+.++|+.+.+.+.... +-+|.-
T Consensus 106 ~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 12345566788998874 44331111122222233222223332 2335789998887776665 557877
Q ss_pred EE--CCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCC
Q 004737 645 WS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV 715 (732)
Q Consensus 645 WD--l~t~~~--~~~i~~~~~----~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spd 715 (732)
|| +.++.. .+.+..++. ..-.--.+++..+|..++++-..++|..+|..+|+.+ ++.-....|++++|--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 88 555432 233333332 1111234556778887777777789999999999988 66666889999999643
No 373
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.33 Score=50.67 Aligned_cols=270 Identities=10% Similarity=0.043 Sum_probs=148.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc--CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
+-+..+.|+ +++...+..+.-++|.|+.+-+....+.. ..+.-.++.. .|++..++..|.-+.+.|+.++..+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345667776 45777778888999999987554433321 2233444444 57888888877778889998876544
Q ss_pred E--EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 529 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 529 ~--~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
. .+.........++.+ | +..+.+..|+-+.+.|+.... .+........+..+..+++ +.+....+..+.+
T Consensus 163 lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 3 333334444677777 3 344456668889999997643 3344444446777766664 4444445556777
Q ss_pred EECCCCeEEEEEcC-CCCCEEEE-EEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 604 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 604 wDl~t~~~i~~l~~-h~~~V~sl-a~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
.|..+.+....+.. ....+.++ .|.-.+++..... +.-+-+.|+.+.........+...+..-..+.. .+.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEe
Confidence 77776653333321 12222222 2222355555555 555667777665332222222222212222222 2333333
Q ss_pred EEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 681 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 681 gs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+..+ ...+.+....+.+ ...+....+.+.+.+-+.+++.+...++-+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3344444433332 1112222344455555566888999999999986
No 374
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0028 Score=72.08 Aligned_cols=137 Identities=7% Similarity=0.099 Sum_probs=97.5
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
|...|.--+++..+++++.|+.-|.+++|+-..+........+-.+.+..+..+++ ++++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 44556666777788999999999999999988766544444444555666667766 67888899899999998765321
Q ss_pred e-----eEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEe
Q 004737 571 A-----GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWN 628 (732)
Q Consensus 571 i-----~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~V~sla~s 628 (732)
. .... +...|++++|++++..+++|...|.|....+.+. .....+....+.|.-|...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1 1111 2456999999999999999999999999888772 1112222345667666654
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.19 E-value=0.058 Score=63.09 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=110.9
Q ss_pred CcceEEEEEcCCCCcEEEEEe-----CC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC---------
Q 004737 535 STTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE--------- 598 (732)
Q Consensus 535 ~~~V~sl~fspdg~~llaSgs-----~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d--------- 598 (732)
...+...+++|+|..++++.. .| ..|++++.. +.. ..+..........|+|+++.+++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 346789999999988887762 23 356666653 222 333333347889999998877776533
Q ss_pred ---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEE---EECCCCCCcee--EEEee-cCCCceEEE
Q 004737 599 ---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV---WSIGSGSKGEC--IHELS-CTGNKFHSC 669 (732)
Q Consensus 599 ---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~I---WDl~t~~~~~~--i~~~~-~~~~~I~sl 669 (732)
+.+.+.+++.+.... ...+.|..+.|+|||..|+...++.|++ -....+. ... ...+. .....+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 234434444433222 2356799999999999999888888777 3433332 111 11122 223346789
Q ss_pred EEeCCCCEEEEEEcCCe--EEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 670 VFHPTFPSLLVIGCYET--LELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~--I~IwDl~t~~~~~~~~--h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
.|..++. |+++..++. ++..++.......+.. ....+.+++-++. .|+....+|.+.
T Consensus 503 ~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 503 DWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred eEecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 9999998 455555543 4444554333222222 3567777877753 455666777554
No 376
>PRK10115 protease 2; Provisional
Probab=97.15 E-value=0.43 Score=57.16 Aligned_cols=200 Identities=9% Similarity=0.017 Sum_probs=106.3
Q ss_pred CceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 004737 493 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 562 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~i 562 (732)
-.+..+.|+||+++|+.+... ..|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778999999988876432 368888998765322223221 14699999988888776533 36888
Q ss_pred EECCCC--eeeeEEeccCC-ee-EEEEeCCCCEEEEEEc---CCeEEEEECC--CCeEEEEEcCCCCCEEEEEEeCCCCE
Q 004737 563 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 633 (732)
Q Consensus 563 WDl~t~--~~i~~~~~~~~-i~-~v~~sp~g~~ll~~s~---dg~I~IwDl~--t~~~i~~l~~h~~~V~sla~spdg~~ 633 (732)
+++.++ +....+..... .. .+..+.++.++++.+. ++.+.+|+.. .+.....+....+....+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 43444443222 22 2233447777665554 3578888853 3332222222222222222 323333
Q ss_pred EEEEe-CC---eEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEE
Q 004737 634 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 700 (732)
Q Consensus 634 Lasgs-Dg---~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~~~ 700 (732)
++... +. .|...++.... . ...+..+ ...+..+.+..+ ..+++...++ .|++++..+++...+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~-~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--Q-WEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--c-CeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 34444444211 1 1222233 246777777732 3344444455 566667655444433
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.13 E-value=0.027 Score=67.03 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=98.5
Q ss_pred CcEEEE-EeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC-------CCEEEEEEcCCeEEEEECCCCe--EEEE-Ec
Q 004737 548 EDLLCS-CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQV--CRLK-LQ 616 (732)
Q Consensus 548 ~~llaS-gs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~-------g~~ll~~s~dg~I~IwDl~t~~--~i~~-l~ 616 (732)
..+|+. ......|+-.|++.|+.+..++.+..+.-..+.|+ ....++|-.++.|..||.+-.. ++.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 344433 34567899999999999999998776655666664 2356888899999999998642 2211 11
Q ss_pred --CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 617 --GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 617 --~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
.......|++-+.+|. ||+|+ +|.||+||-- +. ..-..+.+.+.+|..+..+.||++|++.+ +..|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1345677888777775 55566 9999999943 22 33445667789999999999999776654 456777765
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.017 Score=51.88 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=68.4
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 453 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 453 V~~lafSp---dg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666655 43 479999999999999855 566666544 45777777655 6799999999999998754322
Q ss_pred EEeecCCcceEEEEEc---CCCCcEEEEEeCCCcEE
Q 004737 529 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fs---pdg~~llaSgs~Dg~I~ 561 (732)
+.-. ...++++++. -+|..-|++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 2336666554 34555666777787664
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.092 Score=54.36 Aligned_cols=230 Identities=12% Similarity=0.084 Sum_probs=135.5
Q ss_pred EEEEcCCCC-EEEEEECCCc-EEEEEcCCCeEEEEeccCCCc--eEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCC
Q 004737 455 SCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 525 (732)
Q Consensus 455 ~lafSpdg~-~Lasgs~Dg~-I~VWd~~t~~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~ 525 (732)
.++|+|-.. -++.+-.-|+ ..|+|........++...++. --.=.|++||.+|+..-.| |.|-|||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 477887544 4555555454 567888877665554322111 1112699999999876443 789999999765
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEe------CCC-----------cEEEEECCCCeeeeEEecc-----CCeeEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NNS-----------EIRYWSINNGSCAGVFKCQ-----SGATQM 583 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs------~Dg-----------~I~iWDl~t~~~i~~~~~~-----~~i~~v 583 (732)
..+-.+..|.-....+.|.+||+.+++..+ .-| .+.+.|..++..+...... -.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 556677888877888999999987776543 011 2334444455554433322 346777
Q ss_pred EEeCCCCEEEEEEcCCe-----EEEEECCCCeEEEEEcC-------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 004737 584 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 649 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~-----I~IwDl~t~~~i~~l~~-------h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t 649 (732)
+..+++..++.+-..|. -.+=-...++.+.-+.- ....|-+|+.+.+..+++..+ .+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 77777655554433331 11111122333322221 234677888887777777777 55889999999
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+ ..+.... -..++-.-+...-+++.+..|.+.+|.
T Consensus 312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred C---cEEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 8 3333211 111222333444477888888888774
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.07 E-value=0.0014 Score=44.69 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 478 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd 478 (732)
.+..+..|...|.+++|.+++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556778999999999999999999999999999996
No 381
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0018 Score=44.04 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.3
Q ss_pred CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
++....+..|...|.++.|.+++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.02 E-value=0.04 Score=64.31 Aligned_cols=230 Identities=12% Similarity=0.076 Sum_probs=119.7
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCC------CeEEEEecCCCCce
Q 004737 461 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 527 (732)
Q Consensus 461 dg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl~s~~~~ 527 (732)
.+.+++.||.+ ..|..||..+..-.....- +...-.++++. ++.+.++|+.| .++..||...+...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34566666665 3677888877633322211 22223344444 45788888888 36778888776532
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCCeeEEEE-eCCCCEEEEEEcCC--
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIEN-- 599 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~i~~v~~-sp~g~~ll~~s~dg-- 599 (732)
....-...-..+....-+..+.++|+.|| .|-.||..+.+....-........... .-++..+++|+.++
T Consensus 363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 22211111112222222357788888886 477788876654433322222222222 23455666666543
Q ss_pred ----eEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCceE
Q 004737 600 ----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 667 (732)
Q Consensus 600 ----~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~~~~~I~ 667 (732)
.+..||..+..... .+...... ..++.. ++.+++.|+ |+ +|..||..+..- ..+.........+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCceeecCCccccccc-ceEEEE-CCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence 57889988765432 22211111 223333 455555555 55 478888877521 22221221112111
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEE
Q 004737 668 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 698 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~ 698 (732)
+..-++...++|+.|+ +|..||..+++..
T Consensus 518 --~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 518 --VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred --EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 2223455667777666 6888887777655
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.01 E-value=0.56 Score=48.81 Aligned_cols=179 Identities=9% Similarity=0.012 Sum_probs=110.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCee--EEEEeCCCCEEEEEEc-CCeEEEEECCCCeE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAAAI-ENYISILDVETQVC 611 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~--~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~ 611 (732)
-...+.|..++ .++-+.+.-| .|+.+|+.+++.......+.... .++.. ++.++--+. ++...+||..+.+.
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 35577775554 5666766555 79999999999888777665532 34444 345555554 78999999999988
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCeE
Q 004737 612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYETL 687 (732)
Q Consensus 612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~---~~I~sl~fspdg~~L~sgs~dg~I 687 (732)
+.++. ..+.=+.++ .|+..|+... ...|+++|..+......+... ..+ ..++.+.|. +|...+=.-....|
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 88876 345667777 3455555444 779999998876433322222 222 345667776 56555555566789
Q ss_pred EEEECCCCeEEEEc------c-------C---CCCeeEEEEeCCCCEEEEEE
Q 004737 688 ELWNMTENKTLTLS------A-------H---DKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 688 ~IwDl~t~~~~~~~------~-------h---~~~V~sla~spdg~~LaSgs 723 (732)
...|..+|++.... . + .+-.+.|+|.|..+.|+..+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999999987321 0 1 34689999998877555444
No 384
>PHA02713 hypothetical protein; Provisional
Probab=96.99 E-value=0.051 Score=63.46 Aligned_cols=216 Identities=8% Similarity=0.011 Sum_probs=106.9
Q ss_pred cEEEEEcCCCeEEE--EeccCCCceEEEEEcCCCCeEEEEeCC------CeEEEEecCCCCceeEEeecCC--cceEEEE
Q 004737 473 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLRTFTGHS--TTVMSLD 542 (732)
Q Consensus 473 ~I~VWd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl~s~~~~~~~l~~h~--~~V~sl~ 542 (732)
.+..||..+.+-.. .+...... .+++. -++.+++.|+.+ ..+..||..+... .....-. ..-.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEE
Confidence 56777877654321 12111111 12222 256677777754 3577888876543 2111111 1111222
Q ss_pred EcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCCe--eEEEEeCCCCEEEEEEcC-----------------
Q 004737 543 FHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIE----------------- 598 (732)
Q Consensus 543 fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~i--~~v~~sp~g~~ll~~s~d----------------- 598 (732)
.. ++.+.+.|+.++ .+.+||..+.+....-...... .+++ .-++..+++|+.+
T Consensus 349 ~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 349 VI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccc
Confidence 22 246666777653 4888998876544322211111 1111 2245556666644
Q ss_pred ------CeEEEEECCCCeEEEEEcCCCCCEE-EEEEeCCCCEEEEEe-CC------eEEEEECCCCCCceeEEEeecCCC
Q 004737 599 ------NYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTGN 664 (732)
Q Consensus 599 ------g~I~IwDl~t~~~i~~l~~h~~~V~-sla~spdg~~Lasgs-Dg------~I~IWDl~t~~~~~~i~~~~~~~~ 664 (732)
..+..||.++.+-...-.-...... +++. -++++.+.|+ ++ .+..||..+......+..+.....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2477888887643321111111111 2222 3455555555 32 467898886212233333333222
Q ss_pred ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE
Q 004737 665 KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL 698 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~ 698 (732)
....++ -+++..++|+.++ .+..||..+.+..
T Consensus 505 ~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 505 ALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence 222222 2677778888787 7888998888766
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.98 E-value=0.17 Score=57.17 Aligned_cols=145 Identities=11% Similarity=0.107 Sum_probs=91.4
Q ss_pred CCeEEEEEcCC----CCEEEEEECCCcEEEEEcC-----CCeEEEEec-cCCC--c--eEEEEEcCCCCeEEEEeCCCeE
Q 004737 451 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EHTQ--W--ITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 451 ~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~-~h~~--~--V~~l~fspdg~~Lasgs~Dg~I 516 (732)
..|..++|.|- ...|+..-..+.|.||-+- ..+.+..-. .... + -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45899999984 3345555677899999764 222221111 1111 1 2356799998888877666555
Q ss_pred EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----eEEeccCCeeEEEEeCCCCE
Q 004737 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGR 591 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-----~~~~~~~~i~~v~~sp~g~~ 591 (732)
.++++......++.-....+.|.|.+|..||.+++++.+..=.-++||-...... -.|...+.|.++.-.-+ ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 6677765554455444567889999999999999988877778899997543221 23334445555544433 33
Q ss_pred EEEEE
Q 004737 592 ILAAA 596 (732)
Q Consensus 592 ll~~s 596 (732)
+++++
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44444
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.92 E-value=1.6 Score=52.42 Aligned_cols=271 Identities=11% Similarity=0.087 Sum_probs=155.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEE-EEEcCC--CCeEEEEeCCCeEEEEecCCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS--LSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~-l~fspd--g~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
-+.++.--.|+..++.-+.+..|.-..+|.... +.+.+--.-+ .+.. +.|+.+ ...|+++. .+.+++.-++.-.
T Consensus 628 Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iq 704 (1096)
T KOG1897|consen 628 GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQ 704 (1096)
T ss_pred CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchh
Confidence 345666667776655444445566666776433 3332211111 1111 223332 33455554 4567777665422
Q ss_pred -ceeEEeecCCcceEEEEEcCCCCcEEEEEeC-----------C---CcEEEEECCCCeeeeEEeccC-----CeeEEEE
Q 004737 526 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSCAGVFKCQS-----GATQMRF 585 (732)
Q Consensus 526 -~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-----------D---g~I~iWDl~t~~~i~~~~~~~-----~i~~v~~ 585 (732)
..+++.. -......+++.+.. .++.+.+. . ..++++|-++.+.+...+... .+.++.|
T Consensus 705 kl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~ 782 (1096)
T KOG1897|consen 705 KLHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF 782 (1096)
T ss_pred hcceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee
Confidence 2234433 23445677777632 23323221 1 147777777776665544322 2445557
Q ss_pred eCC-CCEEEEEEc----------CCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737 586 QPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 652 (732)
Q Consensus 586 sp~-g~~ll~~s~----------dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~ 652 (732)
..+ +.++++|+. .|.|.+|.......+..... -.+.+.+++.- +|++| ++-...|++|++.+.
T Consensus 783 ~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkll-A~In~~vrLye~t~~-- 858 (1096)
T KOG1897|consen 783 TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLL-AGINQSVRLYEWTTE-- 858 (1096)
T ss_pred cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEE-EecCcEEEEEEcccc--
Confidence 777 556666654 57899998877433333222 23455555432 45544 345778999999876
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
+.++.-..+..++..+...-.+..+++|.--+.|.+ |+-.++... .-.-+..+++++.+-.+..++ -+..+|.+
T Consensus 859 -~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNl 936 (1096)
T KOG1897|consen 859 -RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNL 936 (1096)
T ss_pred -ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccE
Confidence 455555556788899999999999999998886555 455555455 334678889999887555444 45566766
Q ss_pred EE
Q 004737 729 KI 730 (732)
Q Consensus 729 ~I 730 (732)
.+
T Consensus 937 f~ 938 (1096)
T KOG1897|consen 937 FT 938 (1096)
T ss_pred EE
Confidence 54
No 387
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.87 E-value=0.95 Score=49.26 Aligned_cols=232 Identities=14% Similarity=0.152 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE---EEEe----ccCCCceEEEEEcCC---CCeEEEEeC-C--------
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D-------- 513 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l----~~h~~~V~~l~fspd---g~~Lasgs~-D-------- 513 (732)
-+.|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987765 5699999999 44443 2233 224456899999994 334433332 1
Q ss_pred CeEEEEecCCCC-------ceeEEeec---CCcceEEEEEcCCCCcEEEEEeCC------------CcEEEEECCCCee-
Q 004737 514 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 570 (732)
Q Consensus 514 g~I~IWDl~s~~-------~~~~~l~~---h~~~V~sl~fspdg~~llaSgs~D------------g~I~iWDl~t~~~- 570 (732)
..|.-|...... ..+..+.. .......|.|.|++..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 234445444331 11112222 223456799999984444444321 233333332 110
Q ss_pred ------------eeEEe-ccCCeeEEEEeCCCCEEEEEEc--CC--eEEEEECC--------C------C----------
Q 004737 571 ------------AGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------T------Q---------- 609 (732)
Q Consensus 571 ------------i~~~~-~~~~i~~v~~sp~g~~ll~~s~--dg--~I~IwDl~--------t------~---------- 609 (732)
...+. .......++|+|..+.|+++.. ++ .|.+..-- . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 01111 1233567899998566665543 22 23332110 0 0
Q ss_pred ---eEEEEEcCCCCCEEEEEEeC-------CCCEEEEEe-CCeEEEEECCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 004737 610 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 610 ---~~i~~l~~h~~~V~sla~sp-------dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~-~~~~~~~I~sl~fspdg~~ 677 (732)
.++..+.. ...+..+.|.. .+.+|++.. .+.|....+........... +......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 12233333 35567777764 344666555 66888888864422122222 2234457999999999987
Q ss_pred EEEEEcCCeEE
Q 004737 678 LLVIGCYETLE 688 (732)
Q Consensus 678 L~sgs~dg~I~ 688 (732)
+++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777777765
No 388
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.044 Score=60.85 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=91.9
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCC--------EEEEEeCCeEEEEECCCCCCceeEEEeec----
Q 004737 594 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHELSC---- 661 (732)
Q Consensus 594 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~--------~LasgsDg~I~IWDl~t~~~~~~i~~~~~---- 661 (732)
.+.....|+-.|++.|+.+..+.-+.. |+-+.+.|+.+ .|+.-+|..|.-||.+-.... .+.....
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~ 428 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYS 428 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeeccccc
Confidence 344457899999999999999987666 77777777653 455556889999999854331 2222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~ 724 (732)
....+.|.+-..+| +|++|+.+|.|++||-....-. .+.+-..+|..+..+.+|++|+..+.
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 23456666666666 5999999999999997332222 56678889999999999998876554
No 389
>PRK13684 Ycf48-like protein; Provisional
Probab=96.84 E-value=1 Score=49.12 Aligned_cols=269 Identities=8% Similarity=-0.002 Sum_probs=133.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEec----cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
...+++|+|..+.+-+|+|. ++.| |.. +.|+.-.... .....+.++.|.++ ..+++ +..+.| |..+++
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCC
Confidence 45789999986666666664 4543 332 2232222211 12334778888653 34444 344443 333332
Q ss_pred CceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCC
Q 004737 525 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 525 ~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
........ ........+..... ..+++.+ ..|.|..=+ +.++.=..+. ....+..+.+.+++ .+++.+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence 22222211 01111222222222 2233333 344332221 1122111111 13457788888875 455666666
Q ss_pred eEEEE-ECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCE
Q 004737 600 YISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 600 ~I~Iw-Dl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~ 677 (732)
.+..- |-....-......-...++++.+.+++..++++..|.+++=+...+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 65543 2221111222223456789999999999888877886653333443222211110 11224577889998876
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 678 LLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~~~~~~----~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++++.+|.|. .....++..... .-......+.|..+++.++ .+..|.|..|+
T Consensus 273 ~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 56666777665 344555544221 2223577888876666555 56778887664
No 390
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.81 E-value=0.54 Score=48.67 Aligned_cols=237 Identities=11% Similarity=-0.007 Sum_probs=153.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 531 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l- 531 (732)
-..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.......+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4568888999988888888888888989998876655566667788889998876664443 45555555544322222
Q ss_pred -ecCCcceEEEEEcCCCCcEEEEEeCC---------CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 532 -TGHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 532 -~~h~~~V~sl~fspdg~~llaSgs~D---------g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
..-........|.+.|. +-+++... +.|++|+.-. ......++..|+|...++.-.++.|
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPq---------G~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQ---------GGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCC---------CCCCcceEECCCCcEEEEeccccce
Confidence 22245678888999874 44465421 2344444332 2457789999999999988888999
Q ss_pred EEEECCCCeEEEEE--cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 602 SILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 602 ~IwDl~t~~~i~~l--~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
...|..++.....- ......-..+-.+|.++.-++.. .+.+..||..... -....+......-.++.+...++..
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEE
Confidence 99998776322111 11123345565667788777766 7788888876542 2223344455556677777777755
Q ss_pred EEEEcCCeEEEEECCCCeEEEEcc
Q 004737 679 LVIGCYETLELWNMTENKTLTLSA 702 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~~~~~~~~ 702 (732)
++-...+.|.-+|-++-....+..
T Consensus 291 ~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 291 LSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eeccccCceeecCcccceEEEecC
Confidence 555556677777777665554443
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.80 E-value=0.28 Score=54.64 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=56.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EEcC-----CCeEEEEec---cCC--CceEEEEEcC-----------CCCeEEEE
Q 004737 455 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 510 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~V---Wd~~-----t~~~~~~l~---~h~--~~V~~l~fsp-----------dg~~Lasg 510 (732)
+++.+|++++||.+..+..|.+ |+.. ......... .+. ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999988776666 6441 112222221 122 5677776643 45789999
Q ss_pred eCCCeEEEEecCCCCceeEEeecCCcceEEEEEc
Q 004737 511 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 544 (732)
Q Consensus 511 s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs 544 (732)
..+|.|++|... +.. +..-.-|.++|..|.+.
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence 999999999875 332 33333367777777664
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.79 E-value=0.056 Score=63.12 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=112.8
Q ss_pred CCeEEEEeCC------CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeee
Q 004737 504 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCA 571 (732)
Q Consensus 504 g~~Lasgs~D------g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i 571 (732)
+.+++.|+.+ ..|..||..++......-......-.++++.. +.++++|+.| ..+..||..+.+..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence 3444555544 36778887776432211112333345555554 3677788888 36788888877644
Q ss_pred eEEeccCCeeEEEE-eCCCCEEEEEEcCC-----eEEEEECCCCeEEEEEcCCCCCEEEEEE-eCCCCEEEEEe-CC---
Q 004737 572 GVFKCQSGATQMRF-QPRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSVCW-NTSGEYLASVS-DE--- 640 (732)
Q Consensus 572 ~~~~~~~~i~~v~~-sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~h~~~V~sla~-spdg~~Lasgs-Dg--- 640 (732)
..-.....-..... .-+|..+++|+.|| .|..||.++.+....-. ......+... .-+|++.++|+ ++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 42222222112222 22456677788776 48888888764332211 1112222221 22566666665 43
Q ss_pred ---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccCCCCeeEEEE
Q 004737 641 ---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA 712 (732)
Q Consensus 641 ---~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~~~h~~~V~sla~ 712 (732)
++..||..+..- ..+..+........ +-.-++..+++||.++ +|..||..+.+...+..-......+..
T Consensus 442 ~l~sve~YDP~t~~W-~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 442 CLNSVECYDPETNTW-TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccceEEEEcCCCCce-eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 678888877521 12222221111111 2233555666777665 588899998887744322222222211
Q ss_pred -eCCCCEEEEEECCCe
Q 004737 713 -STVNGMVASASHDKC 727 (732)
Q Consensus 713 -spdg~~LaSgs~DG~ 727 (732)
.-++...+.|+.||.
T Consensus 519 ~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEECCEEEEEecccCc
Confidence 124667777887774
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.14 Score=51.73 Aligned_cols=164 Identities=16% Similarity=0.148 Sum_probs=104.7
Q ss_pred EEEEEECCCcEEEEEc--CCCeEEEEecc-----CCCceEEEEEcCCCCeEEEEeCC---------CeEEEEecCCCCce
Q 004737 464 LLATGGHDKKAVLWCT--ESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYS 527 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~--~t~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~D---------g~I~IWDl~s~~~~ 527 (732)
+.+.++..-.|.=||. +..+..+++.+ .+....+-..+|+|++++-.-.| |.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 4455555445555773 33334444321 23456666788999985432222 45555554421
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE--CCCCe-----eeeEEec-----cCCeeEEEEeCCCCEEEEE
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD--l~t~~-----~i~~~~~-----~~~i~~v~~sp~g~~ll~~ 595 (732)
+..+...-.--+.++|+.+.+.+.++-+.+-+|.-|| ..+|. .+..++. +-....+++.-+|+.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2223333344467899988777887888888898888 44443 3333332 1113456677788888888
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd 630 (732)
-..++|..+|..+++.+.+++-....|+|+||--.
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 88899999999999999999888899999999643
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.12 Score=53.54 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=106.5
Q ss_pred CeeeeEEeccCCeeEEEEeCCCCEEE-EEEcCC-eEEEEECCCCeEEEEEcCCCC--CEEEEEEeCCCCEEEEEe-----
Q 004737 568 GSCAGVFKCQSGATQMRFQPRLGRIL-AAAIEN-YISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS----- 638 (732)
Q Consensus 568 ~~~i~~~~~~~~i~~v~~sp~g~~ll-~~s~dg-~I~IwDl~t~~~i~~l~~h~~--~V~sla~spdg~~Lasgs----- 638 (732)
++++...........++++|....-+ .+-.-| ...+||.........+...++ ..-.=+|+|||.+|+...
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 55666666666677788888755533 344444 567899988766555443222 122347999999999865
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------------------CCeEEEEECCCCeEE-
Q 004737 639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------------------YETLELWNMTENKTL- 698 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~------------------dg~I~IwDl~t~~~~- 698 (732)
.|.|-|||.+.+ ...+.++..++-.-..+.|.+||+.++++.. .-++.+.|..++.++
T Consensus 138 ~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 138 NRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 248999999854 3677888888888999999999998887654 114455565666655
Q ss_pred --EEc--cCCCCeeEEEEeCCCCEEEEEECC
Q 004737 699 --TLS--AHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 699 --~~~--~h~~~V~sla~spdg~~LaSgs~D 725 (732)
++. .+...|..++..+|+.+++.|-..
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 233 355678899999888877766443
No 395
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.081 Score=47.53 Aligned_cols=101 Identities=21% Similarity=0.195 Sum_probs=71.1
Q ss_pred eEEEEE---cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737 538 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 614 (732)
Q Consensus 538 V~sl~f---spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~ 614 (732)
|+++++ .-+|..-|++|+.|..|++|+-. +.+..+.....++.++-... ..|+.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 445554 45666788899999999999864 67778887788999888776 779999999999999863 33444
Q ss_pred EcCCCCCEEEEEEeC-CC---CEEEEEe-CCeEEE
Q 004737 615 LQGHKNQVHSVCWNT-SG---EYLASVS-DELVRV 644 (732)
Q Consensus 615 l~~h~~~V~sla~sp-dg---~~Lasgs-Dg~I~I 644 (732)
++. +..++++++.. ++ .-|++|. +|.|-+
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 443 33466766654 22 2455555 887643
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.72 E-value=0.47 Score=49.58 Aligned_cols=188 Identities=9% Similarity=0.022 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEE-ECCCCeE-E
Q 004737 537 TVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL-DVETQVC-R 612 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw-Dl~t~~~-i 612 (732)
.+.+.++++++..+.+... ....++++.. +...........+....|++++..+++...+....++ +...+.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 6889999999988877773 3344555544 3333333233467888999996666665656665665 3333322 1
Q ss_pred EEEcC--CCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 613 LKLQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 613 ~~l~~--h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~------~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
..+.. -...|..+.++|||..++... ++.|.|--+...... ..+.........+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 12221 122899999999999887766 567777765432221 112222233567899999999987766
Q ss_pred EEcCCe-EEE-EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 681 IGCYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 681 gs~dg~-I~I-wDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
+...+. +.. +....+....+..-...+..++...+...++..+.++
T Consensus 183 ~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~ 230 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGG 230 (253)
T ss_pred eCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCCc
Confidence 665552 333 4443333333322223333344434444444443333
No 397
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0066 Score=68.45 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 571 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~-sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i 571 (732)
..|..+.|+|.-..||++..+|.|.+..+.- . .+.++.-|...++ +++|.||| .+++.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence 4578899999999999999999999998873 2 3666666777777 99999995 78889999999999999999888
Q ss_pred eE--EeccCCeeEEEEeC
Q 004737 572 GV--FKCQSGATQMRFQP 587 (732)
Q Consensus 572 ~~--~~~~~~i~~v~~sp 587 (732)
.. +.....+.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 76 44556677777764
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.044 Score=60.87 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=100.6
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEc
Q 004737 546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 616 (732)
Q Consensus 546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~-------ll~~s~dg~I~IwDl~t~-~-~i~~l~ 616 (732)
+.+.++.++.....|+-.|++.|+.+...+.+..|.-+.+.|+.+. -++|-.++.|.-||.+-. . .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3345566666667899999999999999998888888888887542 466778899999998843 2 222222
Q ss_pred CC----CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 617 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 617 ~h----~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
+| .....|++-..+| +|++|+ +|.|++||--.. ..-..+.+.+.+|..+..+.+|++|++. ++..+.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence 22 2345566655555 666677 999999997332 3334567788999999999999976554 455666665
Q ss_pred C
Q 004737 692 M 692 (732)
Q Consensus 692 l 692 (732)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 5
No 399
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.62 E-value=1.3 Score=47.38 Aligned_cols=267 Identities=9% Similarity=0.053 Sum_probs=121.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEec--cC---CCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE--EH---TQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
...+.+|+|..+..-+|+| ..+.| +.. +.|+.-.... .. .-...+|.|..+ ..+++| ..+. |+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~--ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL--LLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE--EEEESS
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce--EEEecC
Confidence 3478999999555555555 44543 333 2333222211 11 224667777643 344444 4553 233332
Q ss_pred CCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--eccCCeeEEEEeCCCCEEEEEEcC
Q 004737 524 PDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 524 ~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--~~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
+...-..+. .-.+....+....++ ..++.+ ..|.|+.= .+.++.=..+ ...+.+..+..++++.+++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 222222221 112333444444332 333333 34444322 2222211111 123557778888888766666555
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE----eecCCCceEEEEEeCC
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPT 674 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~----~~~~~~~I~sl~fspd 674 (732)
..+.-||--...-...-..-...|..+.|.|++.+.+.+..|.|++=+..... ..... .......+..++|.++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCC
Confidence 55667876543222222224578999999999998887778888887722110 11111 2223445889999998
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 675 FPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~~~~----~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
... .+++..+.+ +.....++.-... .-...+..|.|..+.+-+ ..+.||.|.-|
T Consensus 244 ~~~-wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEI-WAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY 301 (302)
T ss_dssp S-E-EEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred CCE-EEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence 774 445556655 3455666655222 234568889987654444 45688887655
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.51 E-value=0.18 Score=58.99 Aligned_cols=177 Identities=7% Similarity=-0.013 Sum_probs=87.0
Q ss_pred CcEEEEEeCC------CcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 004737 548 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL-- 613 (732)
Q Consensus 548 ~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~-- 613 (732)
+.+++.|+.+ ..+..||..+......-....+ .......-++..+++|+.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4666677643 3477889877654322211111 11122233456666777653 48889988764332
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEe-CC-----------------------eEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737 614 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 669 (732)
Q Consensus 614 ~l~~h~~~V~sla~spdg~~Lasgs-Dg-----------------------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl 669 (732)
.+....... +++ .-++++.+.|+ ++ .+..||..+..- ..+..+. .......
T Consensus 384 ~mp~~r~~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~--~~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFW--TGTIRPG 458 (557)
T ss_pred CCCcccccc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCC--cccccCc
Confidence 221111111 122 22566666665 42 467787766421 1111111 1112222
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CeEEEEc---cCCCCeeEEEEeCCCCEEEEEECCC--eEEEe
Q 004737 670 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIW 731 (732)
Q Consensus 670 ~fspdg~~L~sgs~d------g~I~IwDl~t-~~~~~~~---~h~~~V~sla~spdg~~LaSgs~DG--~I~IW 731 (732)
+..-+++..++|+.+ ..+..||..+ .+..... ........++ -++++.++|+.|| .+..|
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 233345555666543 2478899987 5544222 2222222222 3678888999888 44444
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.49 Score=49.50 Aligned_cols=195 Identities=13% Similarity=0.127 Sum_probs=114.9
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 489 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
.+-...|.++.|+|+.+.|++......-.||=..++.. ++++. ..-.....|.+.-+ +.++++--.+..+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcC
Confidence 44555699999999999888887777666665555553 44332 11223456677655 35555666788888887765
Q ss_pred CeeeeEEe-----------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEEcCC-------CCCEEEEE
Q 004737 568 GSCAGVFK-----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---LKLQGH-------KNQVHSVC 626 (732)
Q Consensus 568 ~~~i~~~~-----------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i---~~l~~h-------~~~V~sla 626 (732)
...+..++ .+.+...++|+|....++++-...-+.||.+...... .....+ -..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 53222111 1455778999999999999999888888876643211 111111 12467788
Q ss_pred EeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 627 WNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 627 ~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~---------~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
|++....|++-+ ++.+...|..... +..+.- .-.....++..++|. |+++++-+-.+.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~----~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F 309 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEV----IELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF 309 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCe----eeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence 887554444444 5566666665431 222111 112235567777766 4555554444433
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.59 Score=48.93 Aligned_cols=163 Identities=12% Similarity=0.152 Sum_probs=107.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC-CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
+.+-...|.++.|+|+.+.|++......-.||=...|+.+.++.-. -.....|.|..++.+.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3444555999999999999999988888889988889999887421 223456788888888877777888888877654
Q ss_pred Ccee---------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee--eEEec--------cCCeeEEE
Q 004737 525 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA--GVFKC--------QSGATQMR 584 (732)
Q Consensus 525 ~~~~---------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i--~~~~~--------~~~i~~v~ 584 (732)
...+ ......+.....++|.|.+..++++ -...-+.||.+.... .+ ..... -..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-EccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3211 1112225567899999997777744 445567776655322 11 00000 13366788
Q ss_pred EeCCCCEEEEEEc-CCeEEEEECCCC
Q 004737 585 FQPRLGRILAAAI-ENYISILDVETQ 609 (732)
Q Consensus 585 ~sp~g~~ll~~s~-dg~I~IwDl~t~ 609 (732)
|.+..+.+++-+. ++.+...|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8876666666555 566666776543
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.0032 Score=62.97 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=80.6
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EE-eccCCeeE-E
Q 004737 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF-KCQSGATQ-M 583 (732)
Q Consensus 507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~-~~~~~i~~-v 583 (732)
+..-+.|+.|+-++++..+...+....|...-.-+.+ ..-++.|+.+|.|++|......... .+ .....+.+ +
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4444578888888887544333333333332111222 2345578889999999886321111 11 11122222 2
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCEEEEEEeCCCCEEEEE--e-CCeEEEEECCC
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGS 649 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~V~sla~spdg~~Lasg--s-Dg~I~IWDl~t 649 (732)
..-.++....+++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|..+ + |..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 222344567788899999999999888777666666 455555555555666655 4 66667776654
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.40 E-value=0.79 Score=49.05 Aligned_cols=204 Identities=14% Similarity=0.137 Sum_probs=97.1
Q ss_pred CCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737 435 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSAD 513 (732)
Q Consensus 435 ~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~D 513 (732)
+.|..+..+..-..-.+....+....++ .+..++..|.|+.= .+.++.-. ....-.+.+..+..++||++++++...
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 3455555544222222333444444444 33333444543322 22333322 234455778999999999999998777
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeeeE----E-eccCCeeEEEEeC
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGV----F-KCQSGATQMRFQP 587 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl-~t~~~i~~----~-~~~~~i~~v~~sp 587 (732)
....-||-...... .....-...|..+.|.|++...+ . ...|.|++=+. ...+.-.. + ...-.+..++|.+
T Consensus 166 ~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~lw~-~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGNLWM-L-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp SEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS-EEE-E-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred cEEEEecCCCccce-EEccCccceehhceecCCCCEEE-E-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence 77778886643332 22233457899999999964434 3 36888888772 22221111 1 1122378899998
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCeEEEE
Q 004737 588 RLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVW 645 (732)
Q Consensus 588 ~g~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~V~sla~spdg~~LasgsDg~I~IW 645 (732)
+. .+.+++..|.+.+ ....++.-... ..-...++.|.|.++.+-++.|.+|.|.-|
T Consensus 243 ~~-~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 243 PN-EIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SS--EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CC-CEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 84 4555566664443 33444322222 233557889999888888888889977655
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.27 E-value=2 Score=45.48 Aligned_cols=217 Identities=15% Similarity=0.141 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcC-------CCeEEEEecc-----CCCceEEEEEcCCCC------------eEE
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 508 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~-------t~~~~~~l~~-----h~~~V~~l~fspdg~------------~La 508 (732)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4569999999888888788999999986 1233444432 234578888875322 367
Q ss_pred EEeCCCeEEEEecCCCCc----eeEEee-cCCcce-EEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeee--EEecc-
Q 004737 509 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 577 (732)
Q Consensus 509 sgs~Dg~I~IWDl~s~~~----~~~~l~-~h~~~V-~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t~~~i~--~~~~~- 577 (732)
.+++||+|.-|.-.-... ....+. .....| ..+++.. .+..|.++--..++|.|||-.-.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998532211 112221 112333 3444443 344555555567899999865332211 01100
Q ss_pred -------------CC---eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeC------CCCE
Q 004737 578 -------------SG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 633 (732)
Q Consensus 578 -------------~~---i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~sp------dg~~ 633 (732)
+. |+-..-.++...=+.+..-|.|.+||+.- ..++++. +.-..-+.|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 00 11111122222223333456899999874 4455553 2334456777765 3555
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeecCC------CceEEEEEeC
Q 004737 634 LASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHP 673 (732)
Q Consensus 634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~------~~I~sl~fsp 673 (732)
|+.-- ||+|..||..++ ..+..+.... ..++.+.|..
T Consensus 264 LVGNFGDG~InaFD~~sG---~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG---AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCC---ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 55444 999999999887 3444333222 2345666654
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.20 E-value=0.21 Score=56.51 Aligned_cols=171 Identities=11% Similarity=0.136 Sum_probs=105.6
Q ss_pred cceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC----CCEEEEEEcCCeEEEEECCC-
Q 004737 536 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 608 (732)
Q Consensus 536 ~~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~----g~~ll~~s~dg~I~IwDl~t- 608 (732)
.+|..++|. ||+.++.+.- .+|++++=|- ..+. ..+.|..+.|.|. ...+++.-....|.||-+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG---qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG---QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee---ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468889997 5566665542 3444444332 2222 2356888999885 34688899999999998752
Q ss_pred ----CeEEEEEcC-C--CCC--EEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 609 ----QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 609 ----~~~i~~l~~-h--~~~--V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
.+.+..-.. . .-+ -..+.|+|...+|++-. .+.-.+++++... ..++.-....+.|+|.+|.+||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--SRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--ceEEEeccCCceEEEEEecCcCCEE
Confidence 222222111 1 112 24678999999988877 4444556665443 2222222457889999999999888
Q ss_pred EEEEcCC-eEEEEECCCCeEE-----EEccCCCCeeEEEEeCC
Q 004737 679 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTV 715 (732)
Q Consensus 679 ~sgs~dg-~I~IwDl~t~~~~-----~~~~h~~~V~sla~spd 715 (732)
+++-... .-||||-...... .++.-.+.|.+|.-.-|
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 7776555 7889987554322 33344556666665433
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.18 E-value=1.5 Score=52.85 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=69.7
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc--------eEEEEEcC----------------CCCeEEEEeCCCeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 517 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~I~ 517 (732)
+..|+.++.++.|.-.|..+|+.+-.+...... +..+.+.. .+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777788899999999999988776432211 12233321 234788888999999
Q ss_pred EEecCCCCceeEEeecCCcceE-------------EEEEcC--CCCcEEEEEe----------CCCcEEEEECCCCeeee
Q 004737 518 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 572 (732)
Q Consensus 518 IWDl~s~~~~~~~l~~h~~~V~-------------sl~fsp--dg~~llaSgs----------~Dg~I~iWDl~t~~~i~ 572 (732)
-.|.++++.+. .+. ..+.|. .+.-.| .++.++ .++ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999987542 221 111110 011111 122333 443 26889999999999998
Q ss_pred EEec
Q 004737 573 VFKC 576 (732)
Q Consensus 573 ~~~~ 576 (732)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 8764
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.071 Score=63.71 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=71.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCC-eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceE
Q 004737 461 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 539 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~ 539 (732)
.+..++.|+..|.|-..|+... .....=..-.++|++++|+.+|..++.|-.+|.|.+||+..++ .++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence 4557888988899988887652 1112222345789999999999999999999999999999866 5777777766655
Q ss_pred EEEE---cCCCCcEEEEEeCCCcEEEEEC
Q 004737 540 SLDF---HPSKEDLLCSCDNNSEIRYWSI 565 (732)
Q Consensus 540 sl~f---spdg~~llaSgs~Dg~I~iWDl 565 (732)
.+-+ ..++ ..+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 5543 3343 35557766665 5544
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.17 E-value=2.6 Score=45.92 Aligned_cols=230 Identities=11% Similarity=0.128 Sum_probs=116.9
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc--eeEEe----ecCCcceEEEEEcCC---CCcEEEEEeCC-------
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN------- 557 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l----~~h~~~V~sl~fspd---g~~llaSgs~D------- 557 (732)
..+.|+|.||+++|++ ...|.|++++.. +.. .+..+ .........++++|+ ...+.++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 569999999933 332 12222 234457899999994 22333333311
Q ss_pred -CcEEEEECCCC--e-----ee-eEEec----cCCeeEEEEeCCCCEEEEEEcCC-------------eEEEEECCCCe-
Q 004737 558 -SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV- 610 (732)
Q Consensus 558 -g~I~iWDl~t~--~-----~i-~~~~~----~~~i~~v~~sp~g~~ll~~s~dg-------------~I~IwDl~t~~- 610 (732)
..|.-|....+ . .+ ..+.. ......+.|.|++..+++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444544433 1 11 11111 12356799999986555555422 23333332110
Q ss_pred ------------EEEEEcCCCCCEEEEEEeCC-CCEEEEEe--CC--eEEEEECCCCCC---------------------
Q 004737 611 ------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DE--LVRVWSIGSGSK--------------------- 652 (732)
Q Consensus 611 ------------~i~~l~~h~~~V~sla~spd-g~~Lasgs--Dg--~I~IWDl~t~~~--------------------- 652 (732)
...--.++ .....++|+|. |.++++-. |. .|.+. ..+..
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000112 23467999998 66665533 33 34333 22210
Q ss_pred -----ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCeEE----EEc-cCCCCeeEEEEeCC
Q 004737 653 -----GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TLS-AHDKLVSSLAASTV 715 (732)
Q Consensus 653 -----~~~i~~~~~~~~~I~sl~fspd-------g~~L~sgs~dg~I~IwDl~t~~~~----~~~-~h~~~V~sla~spd 715 (732)
..++..+..| ..+..+.|... +.++++.-..+.|...+++++..+ .+. .....+..+++.||
T Consensus 238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 0122223322 44566666643 333444444458888888755433 222 34458999999999
Q ss_pred CCEEEEEECCCeEE
Q 004737 716 NGMVASASHDKCVK 729 (732)
Q Consensus 716 g~~LaSgs~DG~I~ 729 (732)
|.++++.+.+|.|.
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99888888888774
No 410
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.11 E-value=1.9 Score=47.40 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=115.9
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc----CCCCe--EEEEe-CC---CeEEEEecCCCCceeE
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--LATSS-AD---RTVRVWDTENPDYSLR 529 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs-~D---g~I~IWDl~s~~~~~~ 529 (732)
|...+|+....++-+.+||+.. +.+..+.. +.++.|... -+++. |+.++ .+ .+|++|.++.....+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3455777777888999999875 45555532 233333321 13332 44443 32 4799998874322343
Q ss_pred Eeec-------CCcceEEEEEc--C-CCCcEEEEEeCCCcEEEEECC---CC----eeeeEEeccCCeeEEEEeCCCCEE
Q 004737 530 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 530 ~l~~-------h~~~V~sl~fs--p-dg~~llaSgs~Dg~I~iWDl~---t~----~~i~~~~~~~~i~~v~~sp~g~~l 592 (732)
.+.. ....++.+|+. + ++..+++....+|.+.-|.+. .+ +.++.|.....+..+........|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12346777764 3 456677788889998888774 23 467888888889999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEeC--CC-CEEEEEe--CCeEEEEECCCC
Q 004737 593 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG 650 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t-----~~~i~~l~~--h~~~V~sla~sp--dg-~~Lasgs--Dg~I~IWDl~t~ 650 (732)
+++-.+--|..|+.+- +..+....+ ....|..|++-. ++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999999872 223323322 345777787753 43 4777777 889999998754
No 411
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.07 E-value=3.3 Score=46.23 Aligned_cols=147 Identities=11% Similarity=0.068 Sum_probs=82.3
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCce--eEEE
Q 004737 581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHE 658 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~--~i~~ 658 (732)
..+...+++..++++.....++-||--...-...-......+..+.|.+++.+++++.+|.+.+ ....+.... .+.+
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEE 320 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceee
Confidence 3345556655444443333333344322110111122345788999999999998887776543 333332111 2222
Q ss_pred eec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 659 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 659 ~~~--~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~----~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
... ....+..+.|.+++. +++++..|.+... ...++.... ..-...++.+.|.++++-++ .+.+|.|.-|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred cccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence 222 224588899998876 6677777766655 455555422 22345688999877665554 5678887665
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.075 Score=63.79 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCeEEEE--eCCCeEEEEecCCCCcee----EEee------cCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 494 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasg--s~Dg~I~IWDl~s~~~~~----~~l~------~h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
.|..+...+|+...++. +.+-.|..||+++-.... +-+. ....-..++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676654443 334588999987532111 1111 12234568889987666666777899999
Q ss_pred EEECCCCe-eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEeCCCCEEEE
Q 004737 562 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 636 (732)
Q Consensus 562 iWDl~t~~-~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~V~sla~spdg~~Las 636 (732)
+..+..-. .+..+......++++|+|.|..+++|-..|++.-|...-. ....+.+ ....|.||+|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88775322 2233455567899999999999999999999998875432 2222221 2468999999988888776
Q ss_pred Ee
Q 004737 637 VS 638 (732)
Q Consensus 637 gs 638 (732)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 55
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.82 E-value=2.1 Score=44.63 Aligned_cols=140 Identities=18% Similarity=0.168 Sum_probs=87.9
Q ss_pred ceEEEEEcCCCCeEEEEe---CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCe
Q 004737 494 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 569 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs---~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD-l~t~~ 569 (732)
.+...++++++..+|... ....+.++...... ...+.+ ..+....|++++ .+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence 688999999999887766 33456666554322 222232 368888999995 5554555555566663 33332
Q ss_pred ee-eEEec--c-CCeeEEEEeCCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEcCCCCCEEEEEEeCCCCE
Q 004737 570 CA-GVFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 633 (732)
Q Consensus 570 ~i-~~~~~--~-~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~---t~------~~i~~l~~h~~~V~sla~spdg~~ 633 (732)
.. ..+.. . ..|..+.++|||.+++.... ++.|.+--+. .+ ..+.........+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 22 11211 1 27999999999999888773 4667766443 22 111222233568899999999998
Q ss_pred EEEEe
Q 004737 634 LASVS 638 (732)
Q Consensus 634 Lasgs 638 (732)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88777
No 414
>PHA03098 kelch-like protein; Provisional
Probab=95.80 E-value=0.36 Score=56.10 Aligned_cols=151 Identities=9% Similarity=0.039 Sum_probs=73.4
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 004737 548 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK 614 (732)
Q Consensus 548 ~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i~~ 614 (732)
+.+++.|+.+ ..+..||..+.+....-....+ -.+++ .-++..++.|+.+ ..+..||..+.+-...
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4566677654 3577888876654332211111 11222 2344556666632 4688999887643321
Q ss_pred --EcCCCCCEEEEEEeCCCCEEEEEe-CC--------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737 615 --LQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 683 (732)
Q Consensus 615 --l~~h~~~V~sla~spdg~~Lasgs-Dg--------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~ 683 (732)
+..... -.+++. .++.+++.|+ ++ .+.+||..+..- ..+..+.........+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 111111 112222 3455555554 21 388888876521 111111111111122222 5666666655
Q ss_pred C-----CeEEEEECCCCeEEEEccCC
Q 004737 684 Y-----ETLELWNMTENKTLTLSAHD 704 (732)
Q Consensus 684 d-----g~I~IwDl~t~~~~~~~~h~ 704 (732)
+ ..|.+||..++....+....
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCc
Confidence 4 47899999888766444433
No 415
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=3.4 Score=43.41 Aligned_cols=252 Identities=12% Similarity=0.030 Sum_probs=135.2
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEcCCC
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fspdg 504 (732)
=+++.|..+.....++..+... +--.++.. .|++..++..|.-+.+.|+.+- .+...+.........++.+ |
T Consensus 107 GL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--G 181 (370)
T COG5276 107 GLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--G 181 (370)
T ss_pred ceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--c
Confidence 3456666665544444444431 23344444 4778888886777778887653 3334444444445667775 6
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCc-ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCee
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT 581 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~-~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~ 581 (732)
++-+.+..|+-+.|.|+.++..+...-.-..+ .+.++..+++ ..++ +-. +--+.+-|....+....+.. ...+.
T Consensus 182 n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-r~y~-vvy-~egvlivd~s~~ssp~~~gsyet~~p~ 258 (370)
T COG5276 182 NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-RAYL-VVY-DEGVLIVDVSGPSSPTVFGSYETSNPV 258 (370)
T ss_pred CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-eeEE-EEc-ccceEEEecCCCCCceEeeccccCCcc
Confidence 67778889999999999987654433222233 6777777765 2333 333 34477778776654444332 12222
Q ss_pred EE-EEeCCCCEEEEEEcCCeEEEEECCCCeE---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEE
Q 004737 582 QM-RFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 582 ~v-~~sp~g~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~ 657 (732)
++ .+.-.+++..++..+..+-+.|+..... ...+......-..+.. .+.++..+......+-+....+ ...
T Consensus 259 ~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s---~m~ 333 (370)
T COG5276 259 SISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPS---MMD 333 (370)
T ss_pred cccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChh---hcc
Confidence 22 3333456666666666666777654321 1111111112222322 2344444442244455544331 111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
........+.++..+-+.+.+.....++.+.||+.
T Consensus 334 ~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 334 KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 11122233445555555567778888888888875
No 416
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.60 E-value=2.3 Score=44.19 Aligned_cols=210 Identities=10% Similarity=0.051 Sum_probs=129.7
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 573 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~ 573 (732)
.-..|+-.+||..-+++...+.|--.|-.+++. ...-.+....-..|..-||+...++-.+ .-|.-+|-++.+..+-
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~~--~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDTG--LAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecCc--ceeEEecCcccceEEe
Confidence 456778889999999998888888888888774 3333444555677888898876663222 2566667665543321
Q ss_pred -Ee---ccCCeeEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C
Q 004737 574 -FK---CQSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 639 (732)
Q Consensus 574 -~~---~~~~i~~v~~sp~g~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D 639 (732)
+. .........|.+.|...+++... +.|++|+.. ....-+.||..|||.+.++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 11 22446778899998888877631 234444332 233557889999999887766 7
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCC
Q 004737 640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 717 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~ 717 (732)
+.|-..|..++.. +.+..-.........+-.+|.+...++....+.++.||-...... .+.+....-.++.....++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7788888776632 222222222333445556677777777667778888877655433 3333333444444443333
No 417
>PLN02153 epithiospecifier protein
Probab=95.55 E-value=1.5 Score=47.71 Aligned_cols=175 Identities=8% Similarity=-0.035 Sum_probs=80.9
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEEec-----cCC-eeEEEEeCCCCEEEEEEcC-----------CeEEEEE
Q 004737 548 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QSG-ATQMRFQPRLGRILAAAIE-----------NYISILD 605 (732)
Q Consensus 548 ~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~-----~~~-i~~v~~sp~g~~ll~~s~d-----------g~I~IwD 605 (732)
..+++.|+.+ ..+.+||+.+.+-...-.. ... ....+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 3578899887654432211 111 1112222344556666643 2577899
Q ss_pred CCCCeEEEEEcCC-----CCCEEEEEEeCCCCEEEEEe-C-------------CeEEEEECCCCCCceeEEEee-cCCCc
Q 004737 606 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGNK 665 (732)
Q Consensus 606 l~t~~~i~~l~~h-----~~~V~sla~spdg~~Lasgs-D-------------g~I~IWDl~t~~~~~~i~~~~-~~~~~ 665 (732)
.++.+-.. +... ...-.+++. -++++++.++ + ..|.+||+.+..- ..+.... .....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence 88764332 1111 111112222 2455444433 2 3588888876521 1111110 01111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEEccC------CCC--eeEEEEeCCCCEEEEEE
Q 004737 666 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAH------DKL--VSSLAASTVNGMVASAS 723 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs~d--------------g~I~IwDl~t~~~~~~~~h------~~~--V~sla~spdg~~LaSgs 723 (732)
....+..-+++.++.|+.. ..|+.||..+.....+... ... ..++.+..++++++.|+
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1112223345666666641 2688899887765543211 111 12333344456777776
Q ss_pred CC
Q 004737 724 HD 725 (732)
Q Consensus 724 ~D 725 (732)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 53
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.42 E-value=5.7 Score=44.23 Aligned_cols=220 Identities=10% Similarity=0.062 Sum_probs=104.2
Q ss_pred CCCeEEEEe-CCCeEEEEecCCCCc---eeEEeec---CC----cceEEEEEcCCCCcEEEEE--eC----CCcEEEEEC
Q 004737 503 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI 565 (732)
Q Consensus 503 dg~~Lasgs-~Dg~I~IWDl~s~~~---~~~~l~~---h~----~~V~sl~fspdg~~llaSg--s~----Dg~I~iWDl 565 (732)
+.++|+..+ ..+.|.|.|+.+.-. ..+++.. +. .....+..-|+|+.++ ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777776 578999999984321 1222221 11 1222334456664444 43 22 246888898
Q ss_pred CCCeeeeEEeccCC----eeEEEEeCCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEcCCCC-
Q 004737 566 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 620 (732)
Q Consensus 566 ~t~~~i~~~~~~~~----i~~v~~sp~g~~ll~~s~--------------------dg~I~IwDl~t~~~i~~l~~h~~- 620 (732)
++.+.....+.... -..+-|.|..+.+++... ...+.+||+.+.+.+.++.-...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88888777765333 456778888777777643 34699999999999988874332
Q ss_pred -CEEEEEEeC--CCCEEEEEe--CCeEEEEEC-CCCCC-ceeEEEeecC-----------------CCceEEEEEeCCCC
Q 004737 621 -QVHSVCWNT--SGEYLASVS--DELVRVWSI-GSGSK-GECIHELSCT-----------------GNKFHSCVFHPTFP 676 (732)
Q Consensus 621 -~V~sla~sp--dg~~Lasgs--Dg~I~IWDl-~t~~~-~~~i~~~~~~-----------------~~~I~sl~fspdg~ 676 (732)
....|.|.. +..+=++++ ...|..|-- ..+.- .+.+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 345666654 445544444 555555544 32211 1112222111 23478899999999
Q ss_pred EEEEEEc-CCeEEEEECCCCe---EE-E-Ecc---------------CCCCeeEEEEeCCCCEEEEEE
Q 004737 677 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 677 ~L~sgs~-dg~I~IwDl~t~~---~~-~-~~~---------------h~~~V~sla~spdg~~LaSgs 723 (732)
+|++.+. .|.|+.||+.... +. . ..+ -.+...-+..|.||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9988875 6799999997643 22 1 111 112346678889998877654
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.41 E-value=2.2 Score=51.55 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=46.1
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEeccCCee-------------EEEEeC--CCCEEEEEEc----------CCeEEEE
Q 004737 550 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 604 (732)
Q Consensus 550 llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~-------------~v~~sp--~g~~ll~~s~----------dg~I~Iw 604 (732)
.++.++.|+.|.-.|.++|+.+..+...+.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45567779999999999999887765433221 011111 1356666643 5889999
Q ss_pred ECCCCeEEEEEc
Q 004737 605 DVETQVCRLKLQ 616 (732)
Q Consensus 605 Dl~t~~~i~~l~ 616 (732)
|+++++.+..+.
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999999988775
No 420
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.38 E-value=1.2 Score=49.64 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=49.1
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE-EEEEEeCC-----------------CCEEEEEe--C
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV-HSVCWNTS-----------------GEYLASVS--D 639 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V-~sla~spd-----------------g~~Lasgs--D 639 (732)
+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.= .-+..... ..+|+.-. .
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 6788999997777776666999999999998888888755421 11111111 12344433 7
Q ss_pred CeEEEEECCCC
Q 004737 640 ELVRVWSIGSG 650 (732)
Q Consensus 640 g~I~IWDl~t~ 650 (732)
|.|.||+++.+
T Consensus 390 g~lEvW~~~~g 400 (415)
T PF14655_consen 390 GILEVWSMRQG 400 (415)
T ss_pred CeEEEEecCCC
Confidence 89999999887
No 421
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.34 E-value=0.032 Score=56.01 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=80.5
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE-E
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-S 668 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~-s 668 (732)
+.+.+.++.|.-++++.-+....-. -+... ..+ ..-+.-+++|. +|.|++|...-.. .....+......|. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccc--hHHHhhhcccccceec
Confidence 5566677888877776543221111 11111 111 12234455666 9999999876321 10001111112222 2
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCC-CCeeEEEEeCCCCEEEEE--ECCCeEEEeC
Q 004737 669 CVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 732 (732)
Q Consensus 669 l~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~-~~V~sla~spdg~~LaSg--s~DG~I~IWD 732 (732)
+..-.++.+.++++.++.|+.|++.-++.+.+. .|. ..+..+..+..+++|+.+ |.|..++.|+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 233345567899999999999999999988444 555 566677777777788888 8888888885
No 422
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.34 E-value=8.2 Score=47.04 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=97.4
Q ss_pred cCCCceEEEEEc---C----CCCeEEEEeCCCeEEEEecCCCC--------------ceeEEeec---CCcceEEEEEcC
Q 004737 490 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTENPD--------------YSLRTFTG---HSTTVMSLDFHP 545 (732)
Q Consensus 490 ~h~~~V~~l~fs---p----dg~~Lasgs~Dg~I~IWDl~s~~--------------~~~~~l~~---h~~~V~sl~fsp 545 (732)
....+|..|+|. . ..++|++ -....+.|+...-.+ .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788889887 2 1234444 355567777622111 01112221 123566778887
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004737 546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 625 (732)
Q Consensus 546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sl 625 (732)
....-||..+..|...|||+....... .... -+.....|.| ++|.+. ...-..|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~----------~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNL----------RLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Ccce----------eeccCCCccc-cCCCcc----------cCcceee
Confidence 766677777778888888872111000 1111 1111112333 223221 1345678
Q ss_pred EEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 626 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 626 a~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
+|.++...|++++...+.++|+.+......+ ........|..+.-++.....+..-....|...++..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888899899888999999886432221 1222446688888887733222233345677777766
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.21 E-value=0.84 Score=50.41 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=82.1
Q ss_pred CCeeEEEEeCCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCe
Q 004737 578 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 641 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s-----------~dg-~I~IwDl~t--~~--~i~~l~~h~~~V~sla~spdg~~LasgsDg~ 641 (732)
.....++|.++|+.+++-. ..+ .|.+++-.. ++ ....+.........|++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4466788888877665542 123 777776543 22 223333334456889999988 444 44334
Q ss_pred EEEE-ECCCCC----CceeE-EEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEEC
Q 004737 642 VRVW-SIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM 692 (732)
Q Consensus 642 I~IW-Dl~t~~----~~~~i-~~~~~~----~~~I~sl~fspdg~~L~sgs~d-------------------g~I~IwDl 692 (732)
|..| |..... ..+.+ ..+... ......++|.|||.+.++.+.. +.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4434 543211 11222 223221 3447789999999866655521 34666666
Q ss_pred CCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 693 TENKTLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 693 ~t~~~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
.+++...+...-.....++|++++.++++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6655444333334567899999998877644
No 424
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.066 Score=63.98 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737 588 RLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 665 (732)
Q Consensus 588 ~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~ 665 (732)
.+..+++++..|.+..+|+...-. ...-..-.++|++++|+.+|.+++.|- +|.|.+||+..+ +.++.+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence 345688888889999999876422 122222457999999999999999988 999999999987 444444444444
Q ss_pred ---eEEEEEeCCCCEEEEEEcCCe
Q 004737 666 ---FHSCVFHPTFPSLLVIGCYET 686 (732)
Q Consensus 666 ---I~sl~fspdg~~L~sgs~dg~ 686 (732)
+..+.+..++..++++...|.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc
Confidence 444455566666777776665
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=95.12 E-value=2.7 Score=45.81 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
...+.++.+.+++.+++++ ..|.+..- .+.+..... ....-...++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578999999998776665 45544432 112211122 2223346789999999865 44344 457665323343332
Q ss_pred eeEEec-----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCeE
Q 004737 571 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 642 (732)
Q Consensus 571 i~~~~~-----~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~V~sla~spdg~~LasgsDg~I 642 (732)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222111 13467788888654 556666776653 33433322222 122346788888888888888889988
Q ss_pred EEEEC
Q 004737 643 RVWSI 647 (732)
Q Consensus 643 ~IWDl 647 (732)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87764
No 426
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.06 E-value=7.5 Score=43.58 Aligned_cols=224 Identities=12% Similarity=0.092 Sum_probs=121.2
Q ss_pred CCeEEEEeCCCeEEEEecCCCCce---eEEeecCCcceEEEEEcC---C-CCcEEEEEeCCCcEEEEECCC--Ce-----
Q 004737 504 LSRLATSSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHP---S-KEDLLCSCDNNSEIRYWSINN--GS----- 569 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~---~~~l~~h~~~V~sl~fsp---d-g~~llaSgs~Dg~I~iWDl~t--~~----- 569 (732)
...|++|+..|.++||+....... +..-..-..+|..+.+-. . ....||.- .-..+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998654422 122223456788777542 1 22344333 245677777621 11
Q ss_pred -----eeeEEeccCCeeEEEEeCCC-----CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737 570 -----CAGVFKCQSGATQMRFQPRL-----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 570 -----~i~~~~~~~~i~~v~~sp~g-----~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs- 638 (732)
.+...........+++-|-| ..+.+=+.||.+.+|+-+.-...+.+.. .--.-.++|.+....|++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 11222223445555555432 4567778899999999887655555543 22223467777777777777
Q ss_pred CCeEEEEECCCC--------------------CCceeEEEeecCCCceEEEE---EeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 639 DELVRVWSIGSG--------------------SKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 639 Dg~I~IWDl~t~--------------------~~~~~i~~~~~~~~~I~sl~---fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+..|..|....- +....-.++. -+..+..+. ++.....+++ -.+..+++.+. +|
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~Ivv-Lger~Lf~l~~-~G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVV-LGERSLFCLKD-NG 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEE-EecceEEEEcC-CC
Confidence 778888876321 0001111111 123333333 3323333333 33446777665 34
Q ss_pred eEEEEccCCCCeeEEE-Ee----CCC---CEEEEEECCCeEEEeC
Q 004737 696 KTLTLSAHDKLVSSLA-AS----TVN---GMVASASHDKCVKIWK 732 (732)
Q Consensus 696 ~~~~~~~h~~~V~sla-~s----pdg---~~LaSgs~DG~I~IWD 732 (732)
.+......+....|++ |. .++ ..++.++.++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 5443333333333332 21 122 2478888999998874
No 427
>PHA03098 kelch-like protein; Provisional
Probab=95.04 E-value=0.78 Score=53.27 Aligned_cols=183 Identities=10% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCEEEEEECCC------cEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCCce
Q 004737 461 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 527 (732)
Q Consensus 461 dg~~Lasgs~Dg------~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~~~ 527 (732)
++..++.||.++ .+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+..||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556667776542 577888776554221 1111112222222 56777788765 35778888765532
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC-
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 598 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d- 598 (732)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-....+ ..++ ...++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 11100111111122222 24566666632 3588899887654432221111 1122 22344555555542
Q ss_pred -------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCC
Q 004737 599 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 650 (732)
Q Consensus 599 -------g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~ 650 (732)
..+.+||..+.+-... +...... .+++. -++++++.|+ + ..|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388999887643321 1111111 12222 2566666665 3 26777877654
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.00 E-value=1.3 Score=48.86 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEEcCC--Ce--EEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737 451 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 514 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs-----------~Dg-~I~VWd~~t--~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 514 (732)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....++|.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3467899999999877653 223 777776542 32 234444444556889999888 444 44454
Q ss_pred eEEEEecCCC-----Cc--eeEEeec----CCcceEEEEEcCCCCcEEEEEeC------------------CCcEEEEEC
Q 004737 515 TVRVWDTENP-----DY--SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 565 (732)
Q Consensus 515 ~I~IWDl~s~-----~~--~~~~l~~----h~~~V~sl~fspdg~~llaSgs~------------------Dg~I~iWDl 565 (732)
..++.|.+.. +. .+..+.. +......+.|.|+|..++..++. .|.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455421 11 1111222 12347789999998655544421 134555666
Q ss_pred CCCeeeeEEeccCCeeEEEEeCCCCEEEE
Q 004737 566 NNGSCAGVFKCQSGATQMRFQPRLGRILA 594 (732)
Q Consensus 566 ~t~~~i~~~~~~~~i~~v~~sp~g~~ll~ 594 (732)
..++.............++|++++..+++
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 55443322222334567899888766554
No 429
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.97 E-value=7.2 Score=42.95 Aligned_cols=150 Identities=9% Similarity=0.058 Sum_probs=86.1
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccC--CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCC-cc
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 537 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~-~~ 537 (732)
|+ .++++..||.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.+..+|.+++.. +..+.... ..
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 45 4444577888888888888765433211 12333333333665 77788899888899877764 33333222 11
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEE--EEeCCCCEEEEEEc--CCeEEEEECCCCeEE
Q 004737 538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQM--RFQPRLGRILAAAI--ENYISILDVETQVCR 612 (732)
Q Consensus 538 V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v--~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i 612 (732)
+..-.+..+ ..++.++.++.+...|..+++....+..... -... ........++.+.. ++.+.-+|.+++...
T Consensus 145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 112222222 2333444688999999998888776554331 0000 01123345566655 667888888888776
Q ss_pred EEE
Q 004737 613 LKL 615 (732)
Q Consensus 613 ~~l 615 (732)
...
T Consensus 223 w~~ 225 (370)
T COG1520 223 WSQ 225 (370)
T ss_pred eee
Confidence 653
No 430
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.75 E-value=5.3 Score=42.57 Aligned_cols=164 Identities=9% Similarity=0.099 Sum_probs=94.1
Q ss_pred cEEEEECCCCeeeeEEeccCC-------eeEEEEeCCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEcCC-------
Q 004737 559 EIRYWSINNGSCAGVFKCQSG-------ATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGH------- 618 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~~~-------i~~v~~sp~g-----~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h------- 618 (732)
.|.+||+.+.+.++.+..+.. ...+.+.... .+++.+.. .+.|.|||+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889998888887775433 5567776632 34444444 368999999998776655432
Q ss_pred ------------CCCEEEEEEeC---CCCEEEEEeCCeEEEEECCC-----CCCc------eeEEEeecCCCceEEEEEe
Q 004737 619 ------------KNQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH 672 (732)
Q Consensus 619 ------------~~~V~sla~sp---dg~~LasgsDg~I~IWDl~t-----~~~~------~~i~~~~~~~~~I~sl~fs 672 (732)
...+..++.+| +++.|+...=...++|.+.+ .... ..+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12356666655 66677766622223333322 1110 1122222223456778999
Q ss_pred CCCCEEEEEEcCCeEEEEECCC----CeE--EEEccC-CCCeeEEEEeC--CCCEEEEE
Q 004737 673 PTFPSLLVIGCYETLELWNMTE----NKT--LTLSAH-DKLVSSLAAST--VNGMVASA 722 (732)
Q Consensus 673 pdg~~L~sgs~dg~I~IwDl~t----~~~--~~~~~h-~~~V~sla~sp--dg~~LaSg 722 (732)
++|..+++--....|..|+..+ ... +..... -..+.++.+.+ ++.+.+.+
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9998777778888999999886 122 222222 35788999998 77655554
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.65 E-value=9.3 Score=42.68 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=66.6
Q ss_pred cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----EEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 577 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~-----~i~~l~~--h~~~V~sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
...+..+.+.+++..++++ ..|.+..- ...+. ....+.. ....+.++.|.+++..+++|..|.+.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 3557888898886666544 55665443 33332 1222221 22358899999999988888888666653 44
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
++..............++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 433222222223345688899877765 6777778877655
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.60 E-value=5.5 Score=47.83 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCC----------CCc--eeEEe--------ecCCcceEEEEEcCCC--CcE
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PDY--SLRTF--------TGHSTTVMSLDFHPSK--EDL 550 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s----------~~~--~~~~l--------~~h~~~V~sl~fspdg--~~l 550 (732)
-.|..|.++++|++|+..+..|.+ |..+.. ++. ..+++ ..+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 358889999999999998876644 333321 111 11221 1345678999999974 234
Q ss_pred EEEEeCCCcEEEEECCCC
Q 004737 551 LCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 551 laSgs~Dg~I~iWDl~t~ 568 (732)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 445566999999999753
No 433
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.51 E-value=16 Score=44.68 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=88.1
Q ss_pred EEEEECCCCeeeeEEeccCC-----eeEEEEeCCCCE-E-EEEEc-----------CCeEEEEECCC-CeEEEEEc--CC
Q 004737 560 IRYWSINNGSCAGVFKCQSG-----ATQMRFQPRLGR-I-LAAAI-----------ENYISILDVET-QVCRLKLQ--GH 618 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~~~~~-----i~~v~~sp~g~~-l-l~~s~-----------dg~I~IwDl~t-~~~i~~l~--~h 618 (732)
|+++|..+++.+..+..... +..+.|+..... + +++.. +|.++.|++-. ++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 55566655555554443222 445555554333 3 33322 34577776543 33222221 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEECCCCe
Q 004737 619 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTENK 696 (732)
Q Consensus 619 ~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~--IwDl~t~~ 696 (732)
.+.|. +++|...++++|-...+++||+...+... ..++......|..+.+ .+..+++|.....|. .|+-.++.
T Consensus 935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred Cccce--EEeccCCEEEEecccEEEEeeCChHHHHh-hhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 23443 55577778888888999999997653211 1112222344555554 455688888777554 45555566
Q ss_pred EEEEcc--CCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 697 TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 697 ~~~~~~--h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
.+.+.. -...|+++.+- |...++.+..=|.+.+
T Consensus 1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 665443 33457766654 4445666666666654
No 434
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.36 E-value=0.12 Score=39.12 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 483 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~ 483 (732)
...|.+++|+|...+||.+..||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999998 443
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=1.9 Score=47.51 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE----EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
..++|.++.||+|.+.||+--.|++|.+++...-+. ..+.+..+..|...+|+.+ .-+|..+..| +-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 345899999999999999999999999998743222 2333445566999999866 4566655444 778877766
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeee
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCA 571 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i 571 (732)
+..++..+.|...|.-..|+++..-++.+.+ ..+.+.=+-++++...
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 6667778888899999999998655554444 3444444555554433
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.14 E-value=0.028 Score=65.70 Aligned_cols=163 Identities=10% Similarity=0.105 Sum_probs=90.1
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcC--CCeEE-----EEeccCCCceEEEEEcC---CCCeEEEEeCC
Q 004737 445 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 513 (732)
Q Consensus 445 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~--t~~~~-----~~l~~h~~~V~~l~fsp---dg~~Lasgs~D 513 (732)
.+++..+.|-.+.|-. +...++ -.-|.+.|||++ .|+.. +........+.-|.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4567777888888854 222222 233678899876 34332 22223334455566655 66778888888
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEE-----------cCCCCcEEEEEeCCCcEEEEECC-----CCeeeeEEecc
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF-----------HPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKCQ 577 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~f-----------spdg~~llaSgs~Dg~I~iWDl~-----t~~~i~~~~~~ 577 (732)
++|++.++++.. ...+.+|...+..++| +||| ..++.+..||.+++|-+. ...|+...+.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 999998877543 2455667777666654 5665 344455557776666542 22344444433
Q ss_pred CCeeEEEEeCCC---------C--EEEEEEc-CCeEEEEECCCCeEE
Q 004737 578 SGATQMRFQPRL---------G--RILAAAI-ENYISILDVETQVCR 612 (732)
Q Consensus 578 ~~i~~v~~sp~g---------~--~ll~~s~-dg~I~IwDl~t~~~i 612 (732)
.+-..+||..+. . ++++++. +..+++|.....+|.
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 322223332211 1 1233322 456777776666655
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=94.07 E-value=1.5 Score=50.43 Aligned_cols=179 Identities=7% Similarity=-0.019 Sum_probs=82.6
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC--CeEEEEecCCCCceeEEe
Q 004737 461 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 461 dg~~Lasgs~D-----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~s~~~~~~~l 531 (732)
++.++++||.+ ..+..||..+.+-... +.........+. -++.+.+.|+.+ .++..||..++.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 34556667654 2567788776543221 111111122222 366777777754 3578888765443 221
Q ss_pred ecCCcce--EEEEEcCCCCcEEEEEeCCC---cEEEEECCCCeeeeEEeccCCee-EEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 532 TGHSTTV--MSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILD 605 (732)
Q Consensus 532 ~~h~~~V--~sl~fspdg~~llaSgs~Dg---~I~iWDl~t~~~i~~~~~~~~i~-~v~~sp~g~~ll~~s~dg~I~IwD 605 (732)
..-..+. .+++.. ++.+.+.|+.++ .+..||.++.+-...-....+.. ..+..-++..+++| |.+.+||
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEec
Confidence 1111111 122222 246666776543 47788887765443222111111 11122333334444 4577888
Q ss_pred CCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCC
Q 004737 606 VETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 650 (732)
Q Consensus 606 l~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~ 650 (732)
.++.+-.. .+....... +++. -++++.+.|+ + ..|.+||..+.
T Consensus 422 p~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 87764332 222111122 2222 2555555555 3 24556665543
No 438
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.90 E-value=16 Score=42.97 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=68.6
Q ss_pred EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC-CCCCEEEEEEeCC------CCEEEEEe--CC-
Q 004737 573 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG-HKNQVHSVCWNTS------GEYLASVS--DE- 640 (732)
Q Consensus 573 ~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~-h~~~V~sla~spd------g~~Lasgs--Dg- 640 (732)
.++....+..+.|..++..+++...+|.|.+||...+. .+..+.. +...+..=+|-++ ..++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44566889999999999999999999999999993321 1112221 2222221133222 23444433 22
Q ss_pred --eEEEEECCCCCCceeEEEee---cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 641 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 641 --~I~IWDl~t~~~~~~i~~~~---~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.++++.+.... ..+.++. .+......+.|.- +|. |+.- .++.|.+|++...+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEE
Confidence 78888882211 2222322 2222233333332 454 3333 7779999999887655
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.89 E-value=1.6 Score=51.17 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEc--CCCCcEEEEEeCCCcEEEEEC
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 565 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs--pdg~~llaSgs~Dg~I~iWDl 565 (732)
..+..+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++| ....|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence 3455555555455444444456899999998764444333557889999996 6776677555 4677877753
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=93.75 E-value=3.2 Score=47.58 Aligned_cols=144 Identities=8% Similarity=-0.009 Sum_probs=69.7
Q ss_pred CcEEEEEeCC--CcEEEEECCCCeeeeEEeccCCeeE-EEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEE--EcCCC
Q 004737 548 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 619 (732)
Q Consensus 548 ~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~~~i~~-v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~--l~~h~ 619 (732)
+.+.+.|+.+ ..+..||..+.+....-........ ....-++..+++|+.+ ..+..||.++..-... +....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4666677643 4578888876544332222222111 2223345556666654 3577888877643321 11111
Q ss_pred CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 004737 620 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 694 (732)
Q Consensus 620 ~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t 694 (732)
.. .+++ .-++++.+.| |.+.+||..+.. ...+..+....... + +..-+++..++||.+ ..|.+||..+
T Consensus 399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~-~-~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNP-E-LIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCcccc-E-EEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 11 1222 2345555555 456788887642 12222222111112 2 223355666666643 3577888777
Q ss_pred CeEE
Q 004737 695 NKTL 698 (732)
Q Consensus 695 ~~~~ 698 (732)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6654
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.69 E-value=2.3 Score=49.75 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=79.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEc--CCCCeEEEEeCCCeEEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVRV 518 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fs--pdg~~Lasgs~Dg~I~I 518 (732)
....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334444445556666666656655555556789999999877554332 456789999995 58899999999999999
Q ss_pred EecC-----CCC---ceeE--EeecCC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737 519 WDTE-----NPD---YSLR--TFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 519 WDl~-----s~~---~~~~--~l~~h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
|--. +.. ..++ .+..|+ .+|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 8432 111 1122 223444 6799999999874 33233 4578888753
No 442
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.60 E-value=11 Score=40.62 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=48.8
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeee---eEEe-ccCCe--eEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeE
Q 004737 548 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQVC 611 (732)
Q Consensus 548 ~~llaSgs~D-----g~I~iWDl~t~~~i---~~~~-~~~~i--~~v~~sp~g~~ll~~s~-----dg~I~IwDl~t~~~ 611 (732)
+.+++.|+.+ ..+..||+.+.+.. ..+. ..... .+++. -++..++.|+. ...+.+||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4566666644 35677777665531 1111 11111 12222 23455555554 24688899887643
Q ss_pred EE--EEcCCCCCEEEEEEeCCCCEEEEEe-CC----eEEEEECCCC
Q 004737 612 RL--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 650 (732)
Q Consensus 612 i~--~l~~h~~~V~sla~spdg~~Lasgs-Dg----~I~IWDl~t~ 650 (732)
.. .+... ......+...++++++.|+ ++ .+.+||+.+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 22 22211 1112222233556666665 43 3568888764
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.53 E-value=4.7 Score=40.69 Aligned_cols=103 Identities=16% Similarity=0.269 Sum_probs=66.3
Q ss_pred CEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---C---eEEEE---ecC-CCCceeE-
Q 004737 463 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW---DTE-NPDYSLR- 529 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~I~IW---Dl~-s~~~~~~- 529 (732)
+.|+.+...+.|.+|++. ..+...+|..- +.|..+.++..|+||+|--.+ . .+|+| +.. ....+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444566889999988 44556666543 789999999999999986432 2 56665 222 1111111
Q ss_pred Eeec---------------------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737 530 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 530 ~l~~---------------------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~ 568 (732)
...| -..++.+++.+|...++++++ ++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 1112 234678888888877888554 568899987543
No 444
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.50 E-value=2.6 Score=39.28 Aligned_cols=118 Identities=11% Similarity=0.062 Sum_probs=78.9
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-------eeEEeecCCcceEEEEEcC----CCCcEEEEEeCCCcEEEEE
Q 004737 496 TDVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-------~~~~l~~h~~~V~sl~fsp----dg~~llaSgs~Dg~I~iWD 564 (732)
..-+|......|++++.-|.|.|++...... .++.+ .....|++|+--+ ++..+|+.|+ ...|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 3446666666788888999999998764321 12233 3456788886544 3456776776 56799999
Q ss_pred CCCCeeeeEEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737 565 INNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL 615 (732)
Q Consensus 565 l~t~~~i~~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t~~~i~~l 615 (732)
+....-+..-+.+.++.++.+-. ...-++..+.+..|.-||.+..+...+.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 99887776666678888877643 2234666666777888887766655544
No 445
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.48 E-value=14 Score=40.57 Aligned_cols=189 Identities=5% Similarity=-0.055 Sum_probs=97.2
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC--CeeE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQ 582 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~--~i~~ 582 (732)
.++++..||.|.-.|.+++.......... ...+.+-.+..+|+ ++.++.++.++.+|.++++.+....... .+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 45555788888888888766322111111 12222223333543 4467778899999999999988888666 1112
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEE
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~ 657 (732)
..+. ....++..+.++.+...|..+++.+....... ..+..--...++..++... ++.+.-.|..++...-..+
T Consensus 148 ~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 2222 23445555578999999999888776644321 1111111112333333322 3355566665553211100
Q ss_pred E-eecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 658 E-LSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 658 ~-~~~~~~------~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
. ...... .+..-...-++ .++.++.++.+...|..+++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 0 000000 01111111122 2466677777888888888877
No 446
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=93.48 E-value=0.13 Score=62.76 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=8.7
Q ss_pred CCCCCCcccccccccc
Q 004737 54 LPFQRDSLDDATIKPR 69 (732)
Q Consensus 54 ~~~~~~~~~~~~~~~~ 69 (732)
.|..--++||.+..||
T Consensus 1952 ~~~sqg~~~~t~vhq~ 1967 (2220)
T KOG3598|consen 1952 PPMSQGSSDETKVHQR 1967 (2220)
T ss_pred ccccccccCCCceeec
Confidence 3444456677666444
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.46 E-value=0.024 Score=62.39 Aligned_cols=149 Identities=12% Similarity=0.123 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-E
Q 004737 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 573 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~ 573 (732)
.....|-+.+.-++.++.+..+..||-.... ..-...++....++|..+++.+++.+...+.+.+||+.+...-. .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3455678877778888899899999866422 11122345677889998888888888889999999997543211 1
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWS 646 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWD 646 (732)
+.....-.-+.|++....++.+...|.+.||...+.+.+...-.|...+++++|.+.+..+...+|..+.+-.
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTT 186 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhh
Confidence 1111112236788888889999899999999998887766666699999999999988766655566544433
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.43 E-value=11 Score=40.47 Aligned_cols=107 Identities=7% Similarity=-0.049 Sum_probs=53.3
Q ss_pred CCCeEEEEeCC-----CeEEEEecCCCCce--eEEeecCCcce--EEEEEcCCCCcEEEEEeC-----CCcEEEEECCCC
Q 004737 503 SLSRLATSSAD-----RTVRVWDTENPDYS--LRTFTGHSTTV--MSLDFHPSKEDLLCSCDN-----NSEIRYWSINNG 568 (732)
Q Consensus 503 dg~~Lasgs~D-----g~I~IWDl~s~~~~--~~~l~~h~~~V--~sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~ 568 (732)
++.+++.|+.+ ..+..||+.+.... ...+..-..+. .+++.. + ..+++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45666777654 35677777765431 12211111111 122222 2 456656653 235888898876
Q ss_pred eeeeEEecc--CCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeE
Q 004737 569 SCAGVFKCQ--SGATQMRFQPRLGRILAAAIEN----YISILDVETQVC 611 (732)
Q Consensus 569 ~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t~~~ 611 (732)
+-...-... ......+...++..++.|+.++ .+.+||.++.+-
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 544322111 1222223334556666666553 356889887653
No 449
>PLN02193 nitrile-specifier protein
Probab=93.26 E-value=9.1 Score=43.78 Aligned_cols=149 Identities=4% Similarity=-0.065 Sum_probs=73.4
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEEec---cCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 004737 548 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCR 612 (732)
Q Consensus 548 ~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~---~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i 612 (732)
..+++.|+.+ ..+.+||+.+.+....... ..+ -.+++ .-++..++.++.+ ..+..||+.+.+-.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 4566666654 3588899887655432221 111 11222 2244555666543 34778888776433
Q ss_pred EEEc-----CCCCCEEEEEEeCCCCEEEEEe-C----CeEEEEECCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEE
Q 004737 613 LKLQ-----GHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 613 ~~l~-----~h~~~V~sla~spdg~~Lasgs-D----g~I~IWDl~t~~~~~~i~~~~-~~~~~I~sl~fspdg~~L~sg 681 (732)
..-. ..... ..++. -++++++.++ + ..+.+||+.+..- ..+.... .........+..-+++.++++
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEECCEEEEEC
Confidence 2110 01111 12222 2556665555 4 3689999887521 1111110 011111122223355666666
Q ss_pred EcC--------------CeEEEEECCCCeEEEE
Q 004737 682 GCY--------------ETLELWNMTENKTLTL 700 (732)
Q Consensus 682 s~d--------------g~I~IwDl~t~~~~~~ 700 (732)
+.. ..+++||+.+.....+
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 642 2588999988876633
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.25 E-value=0.094 Score=61.52 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=77.2
Q ss_pred ecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEE-----------EcCCCCeEEEEe
Q 004737 446 IPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSS 511 (732)
Q Consensus 446 l~~H~~~V~~lafSp---dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs 511 (732)
...-...+.-+.|+| +.-++..+-.+++|++.++.+... ..+.+|..++++++ .+|||+.||+++
T Consensus 176 ~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 176 ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 333334444555554 667888888889999887665332 44556777766654 478999999999
Q ss_pred CCCeEEEEecCCCC----ceeEEeecCC-cceEEEEEcCCC-------C--cEEEEEeCCCcEEEEECCCCeee
Q 004737 512 ADRTVRVWDTENPD----YSLRTFTGHS-TTVMSLDFHPSK-------E--DLLCSCDNNSEIRYWSINNGSCA 571 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~----~~~~~l~~h~-~~V~sl~fspdg-------~--~llaSgs~Dg~I~iWDl~t~~~i 571 (732)
.||.++.|-+.-.. .++...+.|+ .+-.|.-|+... . .+|-+...+..+++|.....+|+
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 99999988754211 1234455565 333333333221 1 22323345567999988777776
No 451
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=3.3 Score=41.42 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=98.7
Q ss_pred CCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe
Q 004737 503 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 580 (732)
Q Consensus 503 dg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i 580 (732)
++.++.+.+. ...|++||+++++.....-.. ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+..++.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556665554 347999999987753332221 1122211112223445555667899999999999999988887776
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737 581 TQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 654 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i----~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~ 654 (732)
..++.. +..++.+.....++.-|.++-... .++.+ .-..++.+.|- +|.+.+-.- +..|...|..+++
T Consensus 134 WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr--- 207 (262)
T COG3823 134 WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR--- 207 (262)
T ss_pred eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc---
Confidence 666644 455777766677888787654332 22222 11223344443 455444444 5555555665552
Q ss_pred eEEEe------------ecCCCceEEEEEeCCCCEEEEEE
Q 004737 655 CIHEL------------SCTGNKFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 655 ~i~~~------------~~~~~~I~sl~fspdg~~L~sgs 682 (732)
.+..+ ..+.+..+.+++.|+...++..+
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22221 12344567889999885555544
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=1.2 Score=49.12 Aligned_cols=104 Identities=11% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-
Q 004737 618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE- 694 (732)
Q Consensus 618 h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t- 694 (732)
.+++|.+|.|++|.+.|++-- |.+|.++++-.... .....+-......|...+|+.. .-++.....| +.+|-+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 567999999999999999987 99999999843321 1122222333456889999887 4466666655 55554433
Q ss_pred -CeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 695 -NKTLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 695 -~~~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
........|...|.-..|+++.+.+.-++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22335557888899999999888555443
No 453
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.97 E-value=6.8 Score=47.05 Aligned_cols=81 Identities=26% Similarity=0.348 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcC---------CCeEE---EEe--------ccCCCceEEEEEcCC---CCeE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVK---STL--------EEHTQWITDVRFSPS---LSRL 507 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~---------t~~~~---~~l--------~~h~~~V~~l~fspd---g~~L 507 (732)
-.|..|.++++|++||..|..+.+.+.=.. .++.. +++ ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358899999999999999887655443211 11111 111 134567999999995 5789
Q ss_pred EEEeCCCeEEEEecCCCCceeEEe
Q 004737 508 ATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
++-..|+++|+||+.....+..++
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEE
Confidence 999999999999998766544443
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.90 E-value=3.2 Score=49.19 Aligned_cols=110 Identities=8% Similarity=0.132 Sum_probs=69.4
Q ss_pred eEEEEEcC-CCCcEEEEEeCCCcEEEEECCC-------C-------------eeeeEEeccCCeeEEEEe--CCCCEEEE
Q 004737 538 VMSLDFHP-SKEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILA 594 (732)
Q Consensus 538 V~sl~fsp-dg~~llaSgs~Dg~I~iWDl~t-------~-------------~~i~~~~~~~~i~~v~~s--p~g~~ll~ 594 (732)
|+.|.... .+..+|+.|.+||.|.+|.++. . ++...+.....+..+++. ...+.|++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444332 2457888999999999996521 0 122344455668888888 66666666
Q ss_pred EEcCCeEEEEECCCC--eE-EEEEcCCCCCEEEEEEeCCC-----C-EEEEEe-CCeEEEEEC
Q 004737 595 AAIENYISILDVETQ--VC-RLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 647 (732)
Q Consensus 595 ~s~dg~I~IwDl~t~--~~-i~~l~~h~~~V~sla~spdg-----~-~Lasgs-Dg~I~IWDl 647 (732)
++....|.||-.... +. ...-..+...|.+|+|-++. . .|++++ .|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 666677777654431 11 11111266788999997753 2 666677 998888877
No 455
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=0.95 Score=54.88 Aligned_cols=142 Identities=11% Similarity=0.022 Sum_probs=86.7
Q ss_pred CCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEE-----EEEcC------CCCCEEEEEEeCCCCE--EEEEeCCeE
Q 004737 578 SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGEY--LASVSDELV 642 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~t~~~i-----~~l~~------h~~~V~sla~spdg~~--LasgsDg~I 642 (732)
..+..+.+.+|....++.... -.|+.||+++-... .-+.. ......++.|.|.-.. +++-.|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 344555566665555554443 37889998753211 11111 2234567888886433 333338899
Q ss_pred EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCE
Q 004737 643 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGM 718 (732)
Q Consensus 643 ~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~----~h~~~V~sla~spdg~~ 718 (732)
++..+.-.. ..+.. -......++++|+|.|+.+++|-..|++.-|...-.....+. .....|.+|+|-....+
T Consensus 181 ~V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeE
Confidence 888775431 11111 123566899999999999999999999988865433222211 12468999999877766
Q ss_pred EEEE
Q 004737 719 VASA 722 (732)
Q Consensus 719 LaSg 722 (732)
|++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 6653
No 456
>PLN02153 epithiospecifier protein
Probab=92.80 E-value=17 Score=39.51 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=33.1
Q ss_pred CCCEEEEEECC-------CcEEEEEcCCCeEEEEeccC----CC---ceEEEEEcCCCCeEEEEeCC-----CeEEEEec
Q 004737 461 DGKLLATGGHD-------KKAVLWCTESFTVKSTLEEH----TQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDT 521 (732)
Q Consensus 461 dg~~Lasgs~D-------g~I~VWd~~t~~~~~~l~~h----~~---~V~~l~fspdg~~Lasgs~D-----g~I~IWDl 521 (732)
++++++.|+.+ ..+.+||+.+.+-. .+... .. ....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45566666652 35788888775432 22111 00 1222333 45677777653 35778888
Q ss_pred CCCC
Q 004737 522 ENPD 525 (732)
Q Consensus 522 ~s~~ 525 (732)
.+..
T Consensus 109 ~t~~ 112 (341)
T PLN02153 109 VKNE 112 (341)
T ss_pred CCCE
Confidence 7654
No 457
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.65 E-value=0.36 Score=36.51 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
...|.+++|+|..++||.++.||.|.||.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 458
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.47 E-value=8.8 Score=43.80 Aligned_cols=268 Identities=13% Similarity=0.016 Sum_probs=130.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
..+|..+.|...|. +.+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |.+.+.+.....-
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34588888888884 45566554 6778888877765544333 556655555444 467777666 6666665422111
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEecc---CCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQ---SGATQMRFQPRLGRILAAAIENYISIL 604 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~Iw 604 (732)
....-....|..+.-..+|.. ..|+..|..+ +......... ..+.+ +.+..+-.+.+ +.+.+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~l--WiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGEL--WIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCCCE--EEeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence 111112334444444444432 2355455332 2333222211 11111 23444444444 445666666666554
Q ss_pred ECCCCeEEEEEcCCCC-CEEEEEEeC---CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 605 DVETQVCRLKLQGHKN-QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 605 Dl~t~~~i~~l~~h~~-~V~sla~sp---dg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
+.. ......+....+ .+-.++..| +......-+-|.+.+-+-.++.....++.. .+..|+.+++..++. +..
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g~-lWl 391 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRGR-LWL 391 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCCc-EEE
Confidence 432 111111111111 111111112 111111111222333333333221222222 235567777777555 677
Q ss_pred EEcCCeEEEEECCC-CeEEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 681 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 681 gs~dg~I~IwDl~t-~~~~~~~--~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
++..+-+..|+-.+ +-.+... ...++|..|.-.|+++ |..|+.+|.++.
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77776677777766 3333221 2456788888889888 777888887763
No 459
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.43 E-value=19 Score=39.15 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=22.4
Q ss_pred eEEEEECCCCeEEEEccCCCC-eeEEEEeCCCCEEEEEECCC
Q 004737 686 TLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 686 ~I~IwDl~t~~~~~~~~h~~~-V~sla~spdg~~LaSgs~DG 726 (732)
.+.+||..+.+.......... -...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888877655432222111 12223345678888887653
No 460
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.41 E-value=17 Score=40.27 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.9
Q ss_pred cEEEEECCCCeeee
Q 004737 559 EIRYWSINNGSCAG 572 (732)
Q Consensus 559 ~I~iWDl~t~~~i~ 572 (732)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889987765543
No 461
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=3.2 Score=41.51 Aligned_cols=170 Identities=8% Similarity=-0.020 Sum_probs=94.7
Q ss_pred CcEEEEEeC--CCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEE
Q 004737 548 EDLLCSCDN--NSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 548 ~~llaSgs~--Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~~V~ 623 (732)
..++.+.+. ...|++||+.+++.+...+... .+..--...-+..+.. .-.+|.-.+||.++.+++..+. ..+.=+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence 356656553 4479999999998887666541 2221111222344443 4457888999999888777665 445556
Q ss_pred EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737 624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 699 (732)
Q Consensus 624 sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~ 699 (732)
.++. |++-|+.++ ..+++.-|.++......+... ..+.+ ++.+.|- +|..++-.-.+..|...|..+|+.+.
T Consensus 135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 6664 444444444 557777777664322222111 11222 2333332 34434444444455556666666552
Q ss_pred E-------------ccCCCCeeEEEEeCCCC-EEEEE
Q 004737 700 L-------------SAHDKLVSSLAASTVNG-MVASA 722 (732)
Q Consensus 700 ~-------------~~h~~~V~sla~spdg~-~LaSg 722 (732)
. ..|.+..+.|++.|+.. +++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 23556788999999884 55554
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=4.1 Score=47.75 Aligned_cols=171 Identities=12% Similarity=0.172 Sum_probs=86.4
Q ss_pred CCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE---EcCCCCCEEEEEEeCCCC
Q 004737 557 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGE 632 (732)
Q Consensus 557 Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~---l~~h~~~V~sla~spdg~ 632 (732)
.-.|+||++. |..+..+. .+..+..+.|+.+ ..+++...+|.+++|++-....... +......|..+.|..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 3457788876 44444333 3347888999877 7788999999999999864322211 122233455555555665
Q ss_pred EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEE-EeCCCCE--EEEEEcCCeEEEEECCCC--eEEEEccCCCCe
Q 004737 633 YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPS--LLVIGCYETLELWNMTEN--KTLTLSAHDKLV 707 (732)
Q Consensus 633 ~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~-fspdg~~--L~sgs~dg~I~IwDl~t~--~~~~~~~h~~~V 707 (732)
.+.+.++..+.+.++..... ..........-.-.|-. +.|.... ++-....-...++-.++. ....+......+
T Consensus 141 avlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred EEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 55555555555555544211 01111111111111111 2221111 111110001112222221 122232334567
Q ss_pred eEEEEeCCCCEEEEEECCCeEEE
Q 004737 708 SSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 708 ~sla~spdg~~LaSgs~DG~I~I 730 (732)
..+..||+.++|+--..+|.|.+
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEE
Confidence 78888888888888888887765
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.29 E-value=1.8 Score=48.31 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=90.7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCC-------EEEEEEcCCeEEEEECCCC-eEEEE--E
Q 004737 546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQ-VCRLK--L 615 (732)
Q Consensus 546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~-------~ll~~s~dg~I~IwDl~t~-~~i~~--l 615 (732)
+...++..+.....++-.|++.|+.+..+..+..+ -+.|.|... .-++|-++..|.-.|.+-. ..+.. .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 33344445556677888899999999999887777 677777532 2456666777777777643 22221 1
Q ss_pred cC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 616 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 616 ~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
+. ......|..- ...-||++++ .|-|++||--.. ..-..+.+.+..|..+..+.+|+++++.+. ..|.+.|+
T Consensus 557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hhcccccccccccc-ccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 1122223322 3455788888 889999996443 233345666788999999999997776554 46666665
Q ss_pred C
Q 004737 693 T 693 (732)
Q Consensus 693 ~ 693 (732)
.
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 3
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.97 E-value=37 Score=41.48 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=93.2
Q ss_pred CCCCeEEEEEc---C----CCCEEEEEECCCcEEEEEcCC---------------CeEEEEecc---CCCceEEEEEcC-
Q 004737 449 STSKVESCHFS---P----DGKLLATGGHDKKAVLWCTES---------------FTVKSTLEE---HTQWITDVRFSP- 502 (732)
Q Consensus 449 H~~~V~~lafS---p----dg~~Lasgs~Dg~I~VWd~~t---------------~~~~~~l~~---h~~~V~~l~fsp- 502 (732)
-..+|..|+|. . ..++|++= ....+.|+...- ...+..+.. ...+..+++|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 34567778887 2 12355543 445677766211 122333331 234678999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCC----ceeEEeecCCc----------ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737 503 SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~----~~~~~l~~h~~----------~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~ 568 (732)
+...||+....|...|||+.... ..+.....+.+ .-..|.|.++-+.+| .++ ...+.++|+++.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence 56689999999999999992111 11111111122 234778887755565 444 567899999887
Q ss_pred eeee---EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 569 SCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 608 (732)
Q Consensus 569 ~~i~---~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t 608 (732)
.... ..+....|..+.-++.....+..-....|..+|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 6533 222234577788777643333333457888888877
No 465
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=91.95 E-value=30 Score=40.49 Aligned_cols=200 Identities=14% Similarity=0.081 Sum_probs=111.8
Q ss_pred ceEEEEEcCCCCeEEEEeC-----CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC----cEEEEE
Q 004737 494 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 564 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~-----Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg----~I~iWD 564 (732)
.+-.++.+||.+++|-+-. .-++++-|+.++......+. +....++|.+|+..++++-..++ .|..-.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556788899988886532 34789999998775333333 34678899999999998877655 233333
Q ss_pred CCC--CeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEE
Q 004737 565 INN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 635 (732)
Q Consensus 565 l~t--~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~La 635 (732)
+.+ ..-...+..... ...+.-+....+|+....+ ..+++.+...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 122222322222 3334444455666665533 5688888775432 222221112222222 2244444
Q ss_pred EEe--CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEE
Q 004737 636 SVS--DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 698 (732)
Q Consensus 636 sgs--Dg-~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~ 698 (732)
.-+ +| ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 333 55 566665443111133345556666666666666677777776655 7888888776654
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=17 Score=42.90 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=86.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE--EeecCCcceEEEEEcCCCCc
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED 549 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~--~l~~h~~~V~sl~fspdg~~ 549 (732)
-.|+||++. |..+..+.-....+-.+.|+.+. .|++...||+++||++........ .+......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 468888865 44443333233378889999765 566667999999999874332111 111122334444444343
Q ss_pred EEEEEeCCCcEEE-EECCCCeeeeEEec-c---CCeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCe-EEEEEcCCCC
Q 004737 550 LLCSCDNNSEIRY-WSINNGSCAGVFKC-Q---SGATQMRFQPRLG---RILAAAIENYISILDVETQV-CRLKLQGHKN 620 (732)
Q Consensus 550 llaSgs~Dg~I~i-WDl~t~~~i~~~~~-~---~~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~-~i~~l~~h~~ 620 (732)
+++-. .+|.|.+ -+.... .++.+.. + ....|-...+++. .++-....-...++-.+... ....+.....
T Consensus 140 Vavlt-~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 VAVLT-VSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred eEEEe-cCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 22222 2344433 333321 1111111 0 1112222222211 11111100011112122111 1112222235
Q ss_pred CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737 621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
.+..+..+|+.++|+--. +|.|.+-+.... +++.++.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccC
Confidence 678899999999999877 899988887665 4444444
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.74 E-value=9 Score=38.70 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=80.0
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--C---cEEEE---ECC--CCeee---
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCA--- 571 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g---~I~iW---Dl~--t~~~i--- 571 (732)
+.|+.+.....|.+|++.........-..--+.|..+.++..|++++..=.+. . .+|+| +.. ....+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 44544466778999999954444443333457899999999986665332211 2 45664 221 11111
Q ss_pred ------------------e--EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------EEEEc----CCCC-
Q 004737 572 ------------------G--VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQ----GHKN- 620 (732)
Q Consensus 572 ------------------~--~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~------i~~l~----~h~~- 620 (732)
. .+.....+.+++..|-.+.|++|+. +.+.+|.+..... +..+. .|..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1 1112345677888887777777654 6777776654322 11111 1111
Q ss_pred -CEEEEEEeCCCCEEEEEeCCeEEEEEC
Q 004737 621 -QVHSVCWNTSGEYLASVSDELVRVWSI 647 (732)
Q Consensus 621 -~V~sla~spdg~~LasgsDg~I~IWDl 647 (732)
....+++. +.|++..++..++++.+
T Consensus 188 ~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 23444543 56888888888888765
No 468
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.67 E-value=30 Score=39.87 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=111.7
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCce-eEEeecC-CcceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCeeeeEEec
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 576 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~h-~~~V~sl~fspdg~~llaSgs~--Dg~I~iWDl~t~~~i~~~~~ 576 (732)
..++..++.+..+|.+....+...... .....+. .....++++..++..+++.|+. |+.+..|....-+++..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 446778999999999998887753311 1222222 4566788887765345556654 55666666555666677777
Q ss_pred cCCeeEEEEeCC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEcCC--CCCEEEEEEeC-CCCEEEEEe
Q 004737 577 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS 638 (732)
Q Consensus 577 ~~~i~~v~~sp~----g~------~ll~~s~---dg~I~IwDl~t~~~--i~~l~~h--~~~V~sla~sp-dg~~Lasgs 638 (732)
-+++..+++... .. .+++++. +|.++++.---+-. ......- ...++.+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788988888632 22 5666654 57888774321111 1111111 22344444322 256777777
Q ss_pred CCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeEEE
Q 004737 639 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLA 711 (732)
Q Consensus 639 Dg~I~IWDl~t~~~~~~i~~~-----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~sla 711 (732)
...-+++.+........+.+. ......+.+..+. +..++=+... .|++.+....+.. .+. .....|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 666667766421111222111 1112223332332 3334444443 5888888777766 332 3444555555
Q ss_pred EeCCCCEEEEEECCCeEEEe
Q 004737 712 ASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 712 ~spdg~~LaSgs~DG~I~IW 731 (732)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556666554
No 469
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.40 E-value=37 Score=40.36 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=81.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCc--EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe------CCCe--
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRT-- 515 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~--I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg~-- 515 (732)
...+...+..+.|+|||.+++..+.++. ..+|-+.... .+..+...|....|++++..++... .|+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4456677889999999999988774332 3344332221 3344556788889999988877621 1222
Q ss_pred -----EEEEecCCC-Cc----------eeEEeecCCcceEEEEEcCCCCcEEEEEeCC---C---cEEEEECCCCeeeeE
Q 004737 516 -----VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCAGV 573 (732)
Q Consensus 516 -----I~IWDl~s~-~~----------~~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g---~I~iWDl~t~~~i~~ 573 (732)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++.....
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL 211 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEE
Confidence 334433322 11 1112222344556666666544443332222 1 233333335555555
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEc
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~ 597 (732)
......+..+.|.++++.++..+.
T Consensus 212 ~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 212 TPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred cCCCceeeeeeeCCCCCeeEEecc
Confidence 555556888888998886555443
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.95 E-value=20 Score=39.55 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=19.8
Q ss_pred EEEEECCCCeEEEEccC-CCCeeEEEEeCCCCEEEEEECC
Q 004737 687 LELWNMTENKTLTLSAH-DKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 687 I~IwDl~t~~~~~~~~h-~~~V~sla~spdg~~LaSgs~D 725 (732)
+.+||.++++......- ...-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 56788887665422211 1111122334457777777753
No 471
>PLN02193 nitrile-specifier protein
Probab=90.93 E-value=34 Score=39.12 Aligned_cols=172 Identities=8% Similarity=-0.032 Sum_probs=80.6
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCeeeeEEe---ccC--CeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCe
Q 004737 548 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 610 (732)
Q Consensus 548 ~~llaSgs~D-------g~I~iWDl~t~~~i~~~~---~~~--~i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~ 610 (732)
+.+++.|+.+ ..+.+||+.+.+-...-. ... ........-++..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666642 247788887765432111 001 01111122234455566543 468899998765
Q ss_pred EEEEEcC----CCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEe---ecCCCceEEEEEeCCCCE
Q 004737 611 CRLKLQG----HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 611 ~i~~l~~----h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~---~~~~~~I~sl~fspdg~~ 677 (732)
-...-.. ....-.+++. -++++++.|+ ++ .+.+||+.+..- ..+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 4321110 1111122222 2455555554 32 467788776421 111100 000111 12222 25666
Q ss_pred EEEEEcC----CeEEEEECCCCeEEEEccC----CC-CeeEEEEeCCCCEEEEEEC
Q 004737 678 LLVIGCY----ETLELWNMTENKTLTLSAH----DK-LVSSLAASTVNGMVASASH 724 (732)
Q Consensus 678 L~sgs~d----g~I~IwDl~t~~~~~~~~h----~~-~V~sla~spdg~~LaSgs~ 724 (732)
+++++.+ ..|.+||+.+.+...+... .. ...+++ .-++++++.|+.
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~ 386 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGE 386 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCc
Confidence 6666654 4699999998876644321 11 112222 335667777775
No 472
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.90 E-value=4.7 Score=45.22 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=91.8
Q ss_pred CCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC-------CcEEEEEeCCCcEEEEECCC-CeeeeE
Q 004737 503 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-------EDLLCSCDNNSEIRYWSINN-GSCAGV 573 (732)
Q Consensus 503 dg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg-------~~llaSgs~Dg~I~iWDl~t-~~~i~~ 573 (732)
|..+|+ .+.....++-.|++.++ .+..+.-|... -+.|.|.. ..-| .|-.+..|.-.|.+- +..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 34445567777887766 46666666554 56676652 1233 343455666666543 322222
Q ss_pred EeccCCeeEEEE----eCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 574 FKCQSGATQMRF----QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 574 ~~~~~~i~~v~~----sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
.....-.+.-.| ....+++++++..|.|++||.-..+....+.+-...|..|..+.+|++|++.+...+.+-|++-
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 222222222222 2345899999999999999976655555666777889999999999999999999999998753
No 473
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.58 E-value=54 Score=40.89 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=92.3
Q ss_pred cEEEEECCCCeeeeEEec--cCCeeEEEEeC---------CCCEEEEEEc---------CCeEEEEECCC-----Ce---
Q 004737 559 EIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QV--- 610 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~--~~~i~~v~~sp---------~g~~ll~~s~---------dg~I~IwDl~t-----~~--- 610 (732)
.|.+.+..+++.+-.+.. ...+.++++.. ...++++|+. -|.++|||+-. ++
T Consensus 1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence 455555555555544332 23344444321 1245666654 47899998632 21
Q ss_pred --EEEE--EcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 004737 611 --CRLK--LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 686 (732)
Q Consensus 611 --~i~~--l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~ 686 (732)
.+.. .+.-+++|..+|=. +| +|+++..-+|.||++........+.. -.-+++.....--.++|+++.-...
T Consensus 1085 ~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaF---iD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAF---IDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred cceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEE---eccceeEEehhhhhhheehhhhhhc
Confidence 1111 12356777776632 33 56666677899999954422222222 1233333344444566777777777
Q ss_pred EEEEECCCC-eEEEEc---cCCCCeeEEEEeCCCC--EEEEEECCCeEEEe
Q 004737 687 LELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW 731 (732)
Q Consensus 687 I~IwDl~t~-~~~~~~---~h~~~V~sla~spdg~--~LaSgs~DG~I~IW 731 (732)
|.+.-..+. ..+.+. ...-.+.++.|--+|. ++++++.|++|++|
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 766655432 222222 2233577888877775 67788899999886
No 474
>PRK05560 DNA gyrase subunit A; Validated
Probab=90.57 E-value=42 Score=41.17 Aligned_cols=226 Identities=9% Similarity=0.036 Sum_probs=110.6
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCc--------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE---CCC--
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN-- 567 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~--------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD---l~t-- 567 (732)
-++...+++-+.+|.|+--.+.+... ....+... +.+..+..+.....+++..+ .|.+.... +..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence 44567888889999998876543210 01112222 34444444444455554444 56655554 332
Q ss_pred ----Ceee---eEEeccCCe-eEEEEe--CCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCC
Q 004737 568 ----GSCA---GVFKCQSGA-TQMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 568 ----~~~i---~~~~~~~~i-~~v~~s--p~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spd 630 (732)
|..+ ..+.....+ ..+.+. ++...++..+.+|.++..++.. +.....+.. ...+..+.....
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~ 651 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDG 651 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCC
Confidence 2222 112222233 334444 2567899999999998876643 222333443 234444444334
Q ss_pred C-CEEEEEeCCeEEEEECCCCC------CceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 004737 631 G-EYLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTEN------- 695 (732)
Q Consensus 631 g-~~LasgsDg~I~IWDl~t~~------~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~t~------- 695 (732)
. .+++....|.+..+....-. .+.....+. .+..|..+ .+.++..+++..+..|.++...+..-
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR-EGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC-CCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 3 44444557766555543211 111222232 22334443 44444447888888898777764321
Q ss_pred e-EE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 696 K-TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 696 ~-~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
+ .. .+....+.+..+........++..+.+|.+..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1 11 22222334444333333344555666776543
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.56 E-value=1.6 Score=44.58 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=52.9
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-------c-------CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737 585 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 650 (732)
Q Consensus 585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l-------~-------~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~ 650 (732)
+...+.++++.+.+|.+++||+.+++++..- . .....|..+.++.+|.-|++-++|..+.|+..-.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456788999999999999999998765432 1 2456788899999999888888898999987653
No 476
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.55 E-value=20 Score=43.82 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=78.0
Q ss_pred EEEEEcCCCeEEEEeccC----CCceEEEEEcCCCC--eEEEEeC-----------CCeEEEEecCCCCceeEEeecCCc
Q 004737 474 AVLWCTESFTVKSTLEEH----TQWITDVRFSPSLS--RLATSSA-----------DRTVRVWDTENPDYSLRTFTGHST 536 (732)
Q Consensus 474 I~VWd~~t~~~~~~l~~h----~~~V~~l~fspdg~--~Lasgs~-----------Dg~I~IWDl~s~~~~~~~l~~h~~ 536 (732)
|+++|..+++.+..+... .-.|..+.|+.... +++++.. +|.++.|++-.....+..+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 677777777666555321 22456666765332 3333322 455777776544433333322222
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCCCCEEEEEEcCCeEEE--EECCCCeE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISI--LDVETQVC 611 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~I--wDl~t~~~ 611 (732)
+-.-.+.+|..+.+++. ....+++||+...+.++..+.. ..|+.+.+. +.++++|.....+.. |+.+....
T Consensus 935 ~~~v~Ai~~f~~~~Lag--vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAG--VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CccceEEeccCCEEEEe--cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 22234556766666633 3578999999887776654432 234445443 356777766544433 44333333
Q ss_pred EEEEc-CCCCCEEEEEEeCC
Q 004737 612 RLKLQ-GHKNQVHSVCWNTS 630 (732)
Q Consensus 612 i~~l~-~h~~~V~sla~spd 630 (732)
+.-.. .-..+|+++.+-..
T Consensus 1011 ~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred EEEeCCCccceeeEEEEecC
Confidence 22211 12345666555433
No 477
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.51 E-value=38 Score=39.01 Aligned_cols=247 Identities=11% Similarity=0.104 Sum_probs=119.9
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCCe---EEEEeccC-CCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737 459 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 533 (732)
Q Consensus 459 Spdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~ 533 (732)
..++..++.+..+|.+....+.... .+..+ +. ....+++++..++ .+|+.|+.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4467788889999999888766433 12222 22 4556777776654 47777776554444444433332222233
Q ss_pred CCcceEEEEEcCC---CC-------cEEEEEe--CCCcEEEEECCCC---eeeeEEeccC--CeeEEEEeC-CCCEEEEE
Q 004737 534 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQS--GATQMRFQP-RLGRILAA 595 (732)
Q Consensus 534 h~~~V~sl~fspd---g~-------~llaSgs--~Dg~I~iWDl~t~---~~i~~~~~~~--~i~~v~~sp-~g~~ll~~ 595 (732)
.-++|..+++.+. +. .++++++ .+|.+++..-.-+ .........+ .+..+.... ++.+++++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4578988888532 12 4554443 5678888743211 1222222222 122233222 13455555
Q ss_pred EcCCeEEEEECC---CCeEEEEEc--C---CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeec-CCCce
Q 004737 596 AIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNKF 666 (732)
Q Consensus 596 s~dg~I~IwDl~---t~~~i~~l~--~---h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~-~~~~I 666 (732)
..+ .-+++.+. ....+..+. + ....+.+-.+ . +..++=.....|++.+.... .....+.. .+..|
T Consensus 378 ~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~-~-~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 378 FPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV-G-DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII 451 (504)
T ss_dssp ESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEE-T-TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred cCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc-C-CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence 544 44444442 333332221 1 1122322222 2 55565566667888887665 44444332 33444
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-----cCCCCeeEEEEeC
Q 004737 667 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 714 (732)
Q Consensus 667 ~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-----~h~~~V~sla~sp 714 (732)
.++++. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 452 ~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 444443 356788888888999988877765 211 2567888888776
No 478
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.26 E-value=8.4 Score=35.94 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=71.6
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCe--------EEEEEcCCCCCEEEEEEeC-----CCCEEEEEeCCeEEEEECCC
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~--------~i~~l~~h~~~V~sla~sp-----dg~~LasgsDg~I~IWDl~t 649 (732)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ +...|+.|+...|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555678888899999999876432 233333 456788886544 35688889999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fsp---dg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
... .. ++.-...++++.+-. ...-++.++.+-.|.-||....+.+
T Consensus 83 N~d-~F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LF---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hh---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 532 11 122235566665532 2234666666777888887766654
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.14 E-value=34 Score=37.84 Aligned_cols=181 Identities=13% Similarity=0.180 Sum_probs=104.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEe----CCCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 004737 548 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ----PRLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 615 (732)
Q Consensus 548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~s----p~g~~--ll~~s~-d---g~I~IwDl~--t~~~i~~l 615 (732)
..+++....++-+.+||+. |+.+..+.. +....+.+- -.+.. |++++. + ..|++|.+. ++.. ..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eEc
Confidence 3466677888899999998 555555542 444444332 13333 444443 2 468888664 4433 222
Q ss_pred c-------CCCCCEEEEEEe--C-CCCEEEE-Ee-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 616 Q-------GHKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 616 ~-------~h~~~V~sla~s--p-dg~~Las-gs-Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
. .....+..+|+- + +|.+.+. .. +|.+..|.+..... .+.++++.. ...+..|+......+|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 2 122347778774 3 4554444 44 88888888753222 245666654 45899999999999999
Q ss_pred EEEcCCeEEEEECCCC-----eEEEE-c--cCCCCeeEEEEeC--CC-CEEEEEE-CCCeEEEeC
Q 004737 680 VIGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~-----~~~~~-~--~h~~~V~sla~sp--dg-~~LaSgs-~DG~I~IWD 732 (732)
++-++.-|+-|+.+.. ..+.. . .....|..|++-. ++ .||+..+ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999999999988622 22222 1 2346788888743 33 3666555 466777775
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.97 E-value=11 Score=44.46 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEec-cCCCceEEEEEcC------CCCeEEEEeC-C---CeE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE-EHTQWITDVRFSP------SLSRLATSSA-D---RTV 516 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~-~h~~~V~~l~fsp------dg~~Lasgs~-D---g~I 516 (732)
.+.|..+.|..+++.+++...+|.|.+||....... ..+. .+...|..-+|-+ ...++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 677999999999999999999999999999332221 1221 1222111113322 2345554444 2 256
Q ss_pred EEEecCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-----eEEEEeCC
Q 004737 517 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPR 588 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-----~~v~~sp~ 588 (732)
+++.+......+..+. -+........|+-..+.+..- .+++|.+|++...+....+....-+ ..+.+.|-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7777722222222221 222223333343332334333 5789999999888877776644221 12233332
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737 589 LGRILAAAIENYISILDVETQVCRLKL 615 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t~~~i~~l 615 (732)
...-+.-+.++.|++.|+.-...+..+
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhh
Confidence 222334456789999998765544443
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=8.9 Score=47.89 Aligned_cols=229 Identities=13% Similarity=0.090 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
.....++|+|.-.++|.+..+|.|++|-...-+.......-. ..+..+.|-...........+..+.+|.......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--- 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG--- 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence 346678999999999999999999999765444332221111 1222222222222233344455666665543221
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--eccCCeeEE-EEeCCCCEEEEEEcCCeEEEEEC
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQM-RFQPRLGRILAAAIENYISILDV 606 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--~~~~~i~~v-~~sp~g~~ll~~s~dg~I~IwDl 606 (732)
..+...+++....+- ...+.+ ..+.+++||..-....... ......... .+.+..-.+..--.+-.-.+|-+
T Consensus 113 --~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 113 --VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred --eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 112233333333222 111344 7788888887532211100 000000000 00000000000000000011111
Q ss_pred CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 004737 607 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 686 (732)
Q Consensus 607 ~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~ 686 (732)
.... ..+..+..++.+..+.....++.....+.+-+|+.... .....+.... ..+..++..++++-.|+.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNG-----QLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhccccc-----ccCccCCceEEEEEecCC
Confidence 1000 12222455666666665666666566677777765543 1111222111 122778888999999999
Q ss_pred EEEEECCCCeE
Q 004737 687 LELWNMTENKT 697 (732)
Q Consensus 687 I~IwDl~t~~~ 697 (732)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999988754
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.41 E-value=0.042 Score=60.59 Aligned_cols=141 Identities=16% Similarity=0.270 Sum_probs=99.3
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEE
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~ 657 (732)
.....|.+.+..+++++.+..+..||-.... +..+. ..+....++|+.++..++... .+.+.+||+.+......
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL-- 112 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL-- 112 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH--
Confidence 4556788888889999999999999865432 22222 445667889998888776655 78999999987432111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
+..+ ...-.-+.|++.+..++.+...+.+.||+..+.+..... .|...+++++|.+.+ +.+.++.|.
T Consensus 113 E~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 113 ESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred hccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 1111 111122689999999999999999999999887776444 499999999998876 445555554
No 483
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.39 E-value=7.1 Score=40.47 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=75.7
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCC-ceeEEE--eecCCCceEEEEEeC
Q 004737 601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSK-GECIHE--LSCTGNKFHSCVFHP 673 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~-~~~i~~--~~~~~~~I~sl~fsp 673 (732)
-.+||+.+++....-......+.+-.+.+||++|.+|+ +| .+++|+...... ...... .-....+.-+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45788888765432222233344446778999999988 44 688888654111 011111 112334555667788
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CeEEEE--c------cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 674 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--S------AHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 674 dg~~L~sgs~dg-~I~IwDl~t--~~~~~~--~------~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
||+.|++|+... +..+|.-.. .....+ . .....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998886 556666432 112211 1 1122233566679999999888776554
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.39 E-value=44 Score=38.01 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEec-----cCCCceEEEEEcCCC
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 504 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~-----~h~~~V~~l~fspdg 504 (732)
.-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344578899999998887765569999998665432 22121 124668999999874
No 485
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.34 E-value=8 Score=45.92 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=68.9
Q ss_pred EEEEEEeC--CCCEEEEEe-CCeEEEEECCCC-----------C------CceeEEEeecCCCceEEEEEe--CCCCEEE
Q 004737 622 VHSVCWNT--SGEYLASVS-DELVRVWSIGSG-----------S------KGECIHELSCTGNKFHSCVFH--PTFPSLL 679 (732)
Q Consensus 622 V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~-----------~------~~~~i~~~~~~~~~I~sl~fs--pdg~~L~ 679 (732)
|+.|.... +..+|+.|. ||.|.+|.+++- . ..++...+. .+...+.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 45444433 345666666 999999976321 0 001122222 34578899998 7777777
Q ss_pred EEEcCCeEEEEECCC--CeEE--EEccCCCCeeEEEEeCCC---C---EEEEEECCCeEEEeC
Q 004737 680 VIGCYETLELWNMTE--NKTL--TLSAHDKLVSSLAASTVN---G---MVASASHDKCVKIWK 732 (732)
Q Consensus 680 sgs~dg~I~IwDl~t--~~~~--~~~~h~~~V~sla~spdg---~---~LaSgs~DG~I~IWD 732 (732)
+++....|.||-... .+.. ....|...|-+|+|-++. . +|++++-.|.+.+|+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 777777776665433 2222 222467789999997754 2 788899999988875
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.22 E-value=22 Score=38.54 Aligned_cols=143 Identities=13% Similarity=0.208 Sum_probs=87.0
Q ss_pred CCeeEEEEeCCCCEEEEEEcCCe------EEEEECCCC----eEE-----EEEcCCCC--------CEEEEEEeCCCCEE
Q 004737 578 SGATQMRFQPRLGRILAAAIENY------ISILDVETQ----VCR-----LKLQGHKN--------QVHSVCWNTSGEYL 634 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s~dg~------I~IwDl~t~----~~i-----~~l~~h~~--------~V~sla~spdg~~L 634 (732)
++...+.+.++++.+++.+.+|. ++.+++... ..+ ..+....+ ..-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788889887788888888888 776665541 111 11111111 34478887788877
Q ss_pred EEEe-C------CeEEEEECCCCCCceeE---EEe---------ecCCCceEEEEEeCCCCEEEEEEcCC-------e--
Q 004737 635 ASVS-D------ELVRVWSIGSGSKGECI---HEL---------SCTGNKFHSCVFHPTFPSLLVIGCYE-------T-- 686 (732)
Q Consensus 635 asgs-D------g~I~IWDl~t~~~~~~i---~~~---------~~~~~~I~sl~fspdg~~L~sgs~dg-------~-- 686 (732)
++.- + ..|+.++.. +.....+ ..+ ......+..++++|+|..|+++.... .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 7665 6 678888765 3221221 011 12345689999999999777765422 1
Q ss_pred -----EEE--EECCC-Ce---EEE--Ecc-----CCCCeeEEEEeCCCCEEEE
Q 004737 687 -----LEL--WNMTE-NK---TLT--LSA-----HDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 687 -----I~I--wDl~t-~~---~~~--~~~-----h~~~V~sla~spdg~~LaS 721 (732)
+++ ||..+ +. ... +.. ....|+.+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55554 21 122 222 4578999999999987664
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.19 E-value=2.3 Score=43.42 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEE--------Ec-------cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 670 VFHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~~--------~~-------~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+...+.++++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 355678889999999999999999988761 11 3556789999998887777655 57778775
No 488
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.80 E-value=39 Score=36.66 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=15.5
Q ss_pred CCCeEEEEeCC-----------CeEEEEecCCCCc
Q 004737 503 SLSRLATSSAD-----------RTVRVWDTENPDY 526 (732)
Q Consensus 503 dg~~Lasgs~D-----------g~I~IWDl~s~~~ 526 (732)
++++.+.|+.+ ..+..||..+...
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 56777777653 2467788776543
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.69 E-value=13 Score=41.78 Aligned_cols=28 Identities=11% Similarity=0.368 Sum_probs=16.3
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 666 FHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
|..++..+..+.+++...++.|.+|++.
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 5666666666666666666666666654
No 490
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.64 E-value=14 Score=41.50 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=23.8
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737 620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t 649 (732)
..|..++..+..+++++.. ++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999889999988 88999999986
No 491
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.64 E-value=1.6 Score=32.26 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCcEEEEEcCC
Q 004737 451 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES 481 (732)
Q Consensus 451 ~~V~~lafSpdg---~~Lasgs~Dg~I~VWd~~t 481 (732)
+.|.+|.|||+. .+|+.+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 5888888889999999984
No 492
>PRK05560 DNA gyrase subunit A; Validated
Probab=88.43 E-value=71 Score=39.23 Aligned_cols=255 Identities=11% Similarity=0.054 Sum_probs=130.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeE---------EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec---CCC
Q 004737 457 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENP 524 (732)
Q Consensus 457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl---~s~ 524 (732)
.+-++...+++-+.+|.|+--....... ...+... +.+..+........|+..+..|.+....+ ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455677888889999988876554321 1112222 34444444445566666667776655543 322
Q ss_pred C-----cee---EEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC-------eeeeEEeccCCeeEEEEeCC
Q 004737 525 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 588 (732)
Q Consensus 525 ~-----~~~---~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWDl~t~-------~~i~~~~~~~~i~~v~~sp~ 588 (732)
. ..+ ..+.....-|.++.+... ....++..+.+|.++--++... .....++....+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222233444444421 2345667888999888776432 22222333334444445555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEE-EEeCCCCEEEEEe-CCeEEEEECCCCC------
Q 004737 589 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGS------ 651 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sl-a~spdg~~Lasgs-Dg~I~IWDl~t~~------ 651 (732)
...+++.+..|.+..+.+.. |.....+.. ...|.++ .+.++..+++..+ .|.++...+..-.
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 57788888888877776542 122223322 2344444 4444333555555 8888877654221
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd 715 (732)
.......+......+..+........+++.+.+|.+..++..+-.. .......|..+.+..+
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG 792 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC
Confidence 1112222222233444443333444577777888777777654221 1122344666666433
No 493
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=22 Score=40.26 Aligned_cols=194 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEECCCcEEEEEcCCCeEE-EEeccCCCc---------------------eEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 465 LATGGHDKKAVLWCTESFTVK-STLEEHTQW---------------------ITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 465 Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~---------------------V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
++.+..| .+..||.+..-.. ..+++..+. |..|..++.|..++-++.+| |.|..+.
T Consensus 55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~G-i~vMeLp 132 (741)
T KOG4460|consen 55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKG-LMVMELP 132 (741)
T ss_pred hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCe-eEEEEch
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC---CEEEEEEcCC
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIEN 599 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g---~~ll~~s~dg 599 (732)
..--.-..+......|+|=.|.-+...+.-+.. -.+..++|+|+. ..++.-+.|+
T Consensus 133 ~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~----------------------ltl~Qa~WHP~S~~D~hL~iL~sdn 190 (741)
T KOG4460|consen 133 KRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS----------------------LTLKQAAWHPSSILDPHLVLLTSDN 190 (741)
T ss_pred hhcCccceecCCCceEEEEeecccceeeccCCc----------------------eeeeeccccCCccCCceEEEEecCc
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~ 679 (732)
.|++||+...+.+....+..+. ++...-|++-+|+.+.+-...... ..+.......+....+..++.. |+
T Consensus 191 viRiy~lS~~telylqpgepgR------S~tn~Si~sFGe~~~~~l~~~~a~--~~V~~~Esv~Nd~~~l~~S~kt--L~ 260 (741)
T KOG4460|consen 191 VIRIYSLSEPTELYLQPGEPGR------SPTNVSILSFGEEESLVLNKGRAY--TAVLGEEAVANDFGPLAASPKT--LF 260 (741)
T ss_pred EEEEEecCCcchhhccCCCcCC------CCccceeeccCCcceeeeccCccc--ccccCchhhccCccccccCccc--ee
Q ss_pred EEEcCCeEEEEEC
Q 004737 680 VIGCYETLELWNM 692 (732)
Q Consensus 680 sgs~dg~I~IwDl 692 (732)
+..+.+.+.....
T Consensus 261 ~~nSs~k~E~iE~ 273 (741)
T KOG4460|consen 261 GQNSSGKDEVVEY 273 (741)
T ss_pred eecccccceeEec
No 494
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.92 E-value=4.5 Score=50.20 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=89.3
Q ss_pred eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe--------CCCC-EEEEEeCCeEEEEECCCCC
Q 004737 581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN--------TSGE-YLASVSDELVRVWSIGSGS 651 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s--------pdg~-~LasgsDg~I~IWDl~t~~ 651 (732)
..+-+.|.-++ +-.+.|+.+.+|+.+++.....+.+-...|..|..- |.=+ +|+.+.--.|.++-+....
T Consensus 82 ~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 82 TDMGIFPEIGR-AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeeccchhhcc-eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 33444444222 344568999999999976666666655566555432 2222 3344444445555433221
Q ss_pred C----ce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCC-------e--------------EEEEc-
Q 004737 652 K----GE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN-------K--------------TLTLS- 701 (732)
Q Consensus 652 ~----~~--~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t~-------~--------------~~~~~- 701 (732)
. .. ....+...+..|.++....+|+ ++.+|.||.|+= |...++ + ...+.
T Consensus 161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 161 FTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ccCcccccccceeeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 1 01 1123334467788899788887 666666664432 222221 0 11233
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 702 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 702 ~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+..+|..+++....+++++-+..|+|.+||
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEE
Confidence 5677999999998899999999999999996
No 495
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=87.84 E-value=67 Score=38.21 Aligned_cols=146 Identities=13% Similarity=0.172 Sum_probs=77.6
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEE-----eCCCc-
Q 004737 488 LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 559 (732)
Q Consensus 488 l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSg-----s~Dg~- 559 (732)
...+...+..+.|+|++..++..+.++ ...+|-+.... .+..+...|....|++++..+++-. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 345667788999999999999887443 23444443221 2333455677788888876666511 11222
Q ss_pred ------EEEEECCCC-eeee--EE----------eccCCeeEEEEeCCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 004737 560 ------IRYWSINNG-SCAG--VF----------KCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 613 (732)
Q Consensus 560 ------I~iWDl~t~-~~i~--~~----------~~~~~i~~v~~sp~g~~ll~~s~dg-------~I~IwDl~t~~~i~ 613 (732)
+.+|....+ +... .+ .....+....+.+++..++....+. ...++...++ .+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence 333433222 1111 11 1122344555555555555544332 1233333233 333
Q ss_pred EEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737 614 KLQGHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 614 ~l~~h~~~V~sla~spdg~~Lasgs 638 (732)
.+......+..+.|.++++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555544
No 496
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.70 E-value=42 Score=35.80 Aligned_cols=194 Identities=9% Similarity=0.079 Sum_probs=108.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECC------CC-eeeeEEe------ccCCeeEEEEeCCCC------------E
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFK------CQSGATQMRFQPRLG------------R 591 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~------t~-~~i~~~~------~~~~i~~v~~sp~g~------------~ 591 (732)
.-+.|+|+|.+ .+-++....+...+||.. .. ..+..+. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45789999986 444466667889999986 12 2222222 123456666664332 3
Q ss_pred EEEEEcCCeEEEEECCCCeE-----EEEEc-CCCCCE-EEEEEeCC--CCEEEEEe--CCeEEEEECCCCCCceeEEEe-
Q 004737 592 ILAAAIENYISILDVETQVC-----RLKLQ-GHKNQV-HSVCWNTS--GEYLASVS--DELVRVWSIGSGSKGECIHEL- 659 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~-----i~~l~-~h~~~V-~sla~spd--g~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~- 659 (732)
++.+++||+|.-|...-... ...+. .....| ..+++... +.+|+.+. .++|.|||-.-.... .-..+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 68889999999998532211 12222 112333 45666543 67888877 889999985432110 00000
Q ss_pred ----ecCCCc-----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc--cCCCCeeEEEEeC------CC
Q 004737 660 ----SCTGNK-----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAAST------VN 716 (732)
Q Consensus 660 ----~~~~~~-----------I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~--~h~~~V~sla~sp------dg 716 (732)
.....+ |+-..-.++...=+.+..-|.|-+||+...-+.++. +.-+..+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000001 111111222322333445568999998665554442 4445678888765 34
Q ss_pred CEEEEEECCCeEEEeC
Q 004737 717 GMVASASHDKCVKIWK 732 (732)
Q Consensus 717 ~~LaSgs~DG~I~IWD 732 (732)
.+|+----||+|.+||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5666555799999987
No 497
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.69 E-value=12 Score=44.29 Aligned_cols=93 Identities=13% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEEeCCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737 581 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 652 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t---~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~ 652 (732)
..+.|-|.|..+++-..|| .|.++..+. |+.-... +....+..++|+-....++.+..+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999887665 355554332 1111111 1234566778877777777666889999987654
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
.......-.-..+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 222222222344566678776543
No 498
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=87.22 E-value=83 Score=38.63 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=133.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeE---------EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---C
Q 004737 456 CHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---N 523 (732)
Q Consensus 456 lafSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s 523 (732)
-.+-++...+++-+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+...+.. .
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34456667788888999988876654321 111222 2345454444555667767777766655432 2
Q ss_pred CCc-----ee---EEeecCCcceEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCee-------eeEEeccCCeeEEEEeC
Q 004737 524 PDY-----SL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKCQSGATQMRFQP 587 (732)
Q Consensus 524 ~~~-----~~---~~l~~h~~~V~sl~fsp-dg~~llaSgs~Dg~I~iWDl~t~~~-------i~~~~~~~~i~~v~~sp 587 (732)
... .+ ..+.....-|.++.+.. +....++..+.+|.++-.++..... ...+.....+..+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 110 11 11222222344444332 1234566778899999887654221 11222233444444445
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC------
Q 004737 588 RLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------ 651 (732)
Q Consensus 588 ~g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~------ 651 (732)
....+++.+..|.+..+.+.. |.....+. ....|.++....+..+++..+ .|.++...+..-.
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 556788888888777765532 12222232 233455555444454555555 8888877654321
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaS 721 (732)
.......+......+..+........++..+.+|.+..++..+-... ..-...|..+.... +..++.
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCC-CCEEEE
Confidence 11122222222344444444444455777788887777776542211 12233466666643 334443
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.95 E-value=50 Score=35.79 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=84.6
Q ss_pred CceEEEEEcCCCCeEEEEeCCCe------EEEEecCCCC---ceeE-----EeecCCc--------ceEEEEEcCCCCcE
Q 004737 493 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSLR-----TFTGHST--------TVMSLDFHPSKEDL 550 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~------I~IWDl~s~~---~~~~-----~l~~h~~--------~V~sl~fspdg~~l 550 (732)
+.+..|.+.+++..+++.+.+|. +..+++.... ..+. .+..-.+ ...+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45778888866666666777777 5555554310 0011 1111111 34578885554 56
Q ss_pred EEEEeCC------CcEEEEECCCCeeeeEEe----------------ccCCeeEEEEeCCCCEEEEEEc-----CC----
Q 004737 551 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAI-----EN---- 599 (732)
Q Consensus 551 laSgs~D------g~I~iWDl~t~~~i~~~~----------------~~~~i~~v~~sp~g~~ll~~s~-----dg---- 599 (732)
+++.-.+ ..|+.++.. |+....+. ...+...++++|++..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6566666 678888876 55544332 2345778999999997777654 22
Q ss_pred -------eEEEEECCC-C----eEEEEEcC-----CCCCEEEEEEeCCCCEEEEE
Q 004737 600 -------YISILDVET-Q----VCRLKLQG-----HKNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 600 -------~I~IwDl~t-~----~~i~~l~~-----h~~~V~sla~spdg~~Lasg 637 (732)
.|..||..+ + ...+.+.. ....|..+.+.+++++|+.-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244566654 2 12233332 35678899999999977753
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.33 E-value=51 Score=40.20 Aligned_cols=179 Identities=9% Similarity=0.021 Sum_probs=0.0
Q ss_pred EEEEECCCcEEEEEc-CCCeEEEEe---------ccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCc-----
Q 004737 465 LATGGHDKKAVLWCT-ESFTVKSTL---------EEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY----- 526 (732)
Q Consensus 465 Lasgs~Dg~I~VWd~-~t~~~~~~l---------~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~----- 526 (732)
+++....|.|++|-. .+++....- ...--.--++++..+|..++.++.+ +.|++|.+.-...
T Consensus 65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~ 144 (753)
T PF11635_consen 65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ 144 (753)
T ss_pred EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Q ss_pred --e-----eEEeecCCc--------------------ceEEEEEcC------CCCcEEEEEeCCC----cEEEEECCCCe
Q 004737 527 --S-----LRTFTGHST--------------------TVMSLDFHP------SKEDLLCSCDNNS----EIRYWSINNGS 569 (732)
Q Consensus 527 --~-----~~~l~~h~~--------------------~V~sl~fsp------dg~~llaSgs~Dg----~I~iWDl~t~~ 569 (732)
. +.....+.. .++.+.|-+ ....++++.+... .|..|.+....
T Consensus 145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~ 224 (753)
T PF11635_consen 145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ 224 (753)
T ss_pred CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Q ss_pred ---------------------------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE----c--
Q 004737 570 ---------------------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL----Q-- 616 (732)
Q Consensus 570 ---------------------------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l----~-- 616 (732)
....+..+..|.++....-+..++.+..||.|.++|..+.+.+... .
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~ 304 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP 304 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc
Q ss_pred -------------CCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737 617 -------------GHKNQVHSVCWNTSGEYLASVS-DELVR 643 (732)
Q Consensus 617 -------------~h~~~V~sla~spdg~~Lasgs-Dg~I~ 643 (732)
.....+..++|||.+-.++.-. +|.+.
T Consensus 305 ~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 305 NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred cccccccccccccccCCCCceEEECcccceEEEEecCCCce
Done!