Query 004737
Match_columns 732
No_of_seqs 963 out of 2691
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.1E-42 3.6E-47 375.3 46.8 288 440-732 45-340 (340)
2 1vyh_C Platelet-activating fac 100.0 3.2E-43 1.1E-47 389.9 42.0 285 443-732 101-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 8E-42 2.8E-46 366.3 44.0 285 443-732 25-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 3.9E-41 1.3E-45 365.8 45.8 288 441-732 55-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 3.7E-42 1.3E-46 377.0 33.6 289 441-732 57-372 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 3.8E-40 1.3E-44 349.7 42.6 283 442-729 5-297 (304)
7 3frx_A Guanine nucleotide-bind 100.0 1.1E-39 3.6E-44 348.9 45.1 288 438-732 5-314 (319)
8 1erj_A Transcriptional repress 100.0 7.6E-40 2.6E-44 360.3 43.7 282 448-732 62-386 (393)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-39 3.6E-44 352.8 42.8 292 440-732 5-332 (345)
10 4ery_A WD repeat-containing pr 100.0 5.6E-39 1.9E-43 340.1 46.2 288 440-732 13-309 (312)
11 1nr0_A Actin interacting prote 100.0 1.1E-39 3.6E-44 380.3 42.9 302 423-732 166-608 (611)
12 2xzm_R RACK1; ribosome, transl 100.0 4.6E-39 1.6E-43 346.9 43.0 286 440-732 11-337 (343)
13 1nr0_A Actin interacting prote 100.0 2.4E-39 8.3E-44 377.3 43.5 296 428-732 130-564 (611)
14 2hes_X YDR267CP; beta-propelle 100.0 1.6E-38 5.4E-43 341.4 41.3 288 441-732 5-325 (330)
15 4gqb_B Methylosome protein 50; 100.0 4.3E-39 1.5E-43 349.2 36.9 279 448-732 28-328 (344)
16 2ymu_A WD-40 repeat protein; u 100.0 7.8E-38 2.7E-42 358.8 48.4 295 424-732 281-577 (577)
17 4g56_B MGC81050 protein; prote 100.0 3.3E-39 1.1E-43 351.2 34.8 282 446-732 38-340 (357)
18 3zwl_B Eukaryotic translation 100.0 6.7E-38 2.3E-42 335.6 44.3 284 442-732 24-343 (369)
19 4aow_A Guanine nucleotide-bind 100.0 4.2E-37 1.4E-41 327.0 46.9 287 439-732 27-334 (340)
20 2pm9_A Protein WEB1, protein t 100.0 3.5E-39 1.2E-43 353.4 28.6 305 424-732 42-411 (416)
21 1sq9_A Antiviral protein SKI8; 100.0 8.2E-38 2.8E-42 340.7 38.8 286 441-732 7-392 (397)
22 2ymu_A WD-40 repeat protein; u 100.0 1.1E-36 3.7E-41 349.3 47.5 295 424-732 240-536 (577)
23 1r5m_A SIR4-interacting protei 100.0 4.6E-37 1.6E-41 335.7 41.8 276 449-732 107-422 (425)
24 1gxr_A ESG1, transducin-like e 100.0 1.1E-36 3.8E-41 322.4 42.8 280 446-732 47-334 (337)
25 3ow8_A WD repeat-containing pr 100.0 1E-36 3.4E-41 326.7 42.6 263 425-693 56-320 (321)
26 1vyh_C Platelet-activating fac 100.0 1.8E-37 6E-42 343.8 37.7 260 426-693 129-410 (410)
27 1k8k_C P40, ARP2/3 complex 41 100.0 4.7E-37 1.6E-41 330.8 35.8 282 446-732 4-358 (372)
28 3dm0_A Maltose-binding peripla 100.0 2.4E-36 8.2E-41 356.8 44.3 285 441-732 373-690 (694)
29 3odt_A Protein DOA1; ubiquitin 100.0 8.2E-36 2.8E-40 312.8 42.9 279 440-732 8-293 (313)
30 2ynn_A Coatomer subunit beta'; 100.0 2.6E-36 8.9E-41 320.1 39.1 265 425-695 33-303 (304)
31 4gqb_B Methylosome protein 50; 100.0 1.2E-36 4.2E-41 329.9 36.6 245 447-697 79-334 (344)
32 3k26_A Polycomb protein EED; W 100.0 5.7E-37 2E-41 328.5 31.7 285 445-732 13-363 (366)
33 3ei3_B DNA damage-binding prot 100.0 4.7E-36 1.6E-40 326.6 38.0 284 441-732 64-379 (383)
34 1r5m_A SIR4-interacting protei 100.0 5.1E-36 1.8E-40 327.3 37.9 295 427-732 25-358 (425)
35 3i2n_A WD repeat-containing pr 100.0 5.6E-36 1.9E-40 320.1 37.3 287 444-732 12-350 (357)
36 3gre_A Serine/threonine-protei 100.0 1.4E-36 4.7E-41 336.9 33.0 284 442-732 54-437 (437)
37 3vl1_A 26S proteasome regulato 100.0 6.8E-36 2.3E-40 328.4 37.0 298 426-732 77-416 (420)
38 3frx_A Guanine nucleotide-bind 100.0 4.1E-35 1.4E-39 313.3 41.3 266 424-695 37-318 (319)
39 1got_B GT-beta; complex (GTP-b 100.0 4.6E-35 1.6E-39 315.5 40.0 258 425-691 75-340 (340)
40 3dwl_C Actin-related protein 2 100.0 4.5E-37 1.5E-41 333.3 23.3 285 445-732 6-376 (377)
41 2pm9_A Protein WEB1, protein t 100.0 2.1E-36 7.1E-41 331.3 26.7 278 452-732 14-334 (416)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-34 8.8E-39 310.5 42.1 273 425-698 36-339 (345)
43 4g56_B MGC81050 protein; prote 100.0 1E-35 3.6E-40 323.6 31.0 265 425-695 68-344 (357)
44 2xzm_R RACK1; ribosome, transl 100.0 1.1E-34 3.7E-39 312.7 37.8 266 425-695 47-341 (343)
45 1gxr_A ESG1, transducin-like e 100.0 7.3E-35 2.5E-39 308.4 35.4 278 449-732 8-293 (337)
46 2j04_B YDR362CP, TAU91; beta p 100.0 5.5E-36 1.9E-40 342.9 28.5 306 422-732 178-514 (524)
47 3v7d_B Cell division control p 100.0 3.2E-34 1.1E-38 320.3 42.2 280 441-732 112-418 (464)
48 2pbi_B Guanine nucleotide-bind 100.0 3E-34 1E-38 311.5 39.3 260 425-691 84-354 (354)
49 3mmy_A MRNA export factor; mRN 100.0 1.4E-34 4.8E-39 309.6 35.8 287 440-731 29-342 (368)
50 1yfq_A Cell cycle arrest prote 100.0 4.8E-35 1.6E-39 311.8 31.4 277 443-727 4-315 (342)
51 2pm7_B Protein transport prote 100.0 2.1E-34 7.3E-39 304.3 35.8 251 444-694 3-285 (297)
52 1erj_A Transcriptional repress 100.0 5E-34 1.7E-38 313.8 40.2 262 426-695 84-390 (393)
53 4h5i_A Guanine nucleotide-exch 100.0 6.1E-35 2.1E-39 318.6 32.3 279 451-732 15-340 (365)
54 4a11_B DNA excision repair pro 100.0 1.1E-34 3.9E-39 315.3 34.1 301 427-732 23-362 (408)
55 3f3f_A Nucleoporin SEH1; struc 100.0 8.1E-35 2.8E-39 307.4 31.9 286 444-732 5-334 (351)
56 1pgu_A Actin interacting prote 100.0 9.9E-34 3.4E-38 325.8 43.4 294 427-732 142-611 (615)
57 4e54_B DNA damage-binding prot 100.0 1.8E-35 6.3E-40 329.5 27.6 280 445-732 114-427 (435)
58 3v7d_B Cell division control p 100.0 3E-33 1E-37 312.5 45.3 292 425-731 140-459 (464)
59 4aez_A CDC20, WD repeat-contai 100.0 8.4E-34 2.9E-38 312.2 40.1 280 445-732 86-377 (401)
60 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-33 4.4E-38 343.4 44.9 181 426-613 38-247 (902)
61 4ery_A WD repeat-containing pr 100.0 1.2E-33 4E-38 299.2 38.9 260 426-693 44-311 (312)
62 2hes_X YDR267CP; beta-propelle 100.0 5.8E-34 2E-38 305.8 37.0 267 425-694 32-328 (330)
63 3dw8_B Serine/threonine-protei 100.0 1.6E-34 5.3E-39 319.9 32.9 278 448-731 26-442 (447)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.4E-33 1.1E-37 311.2 43.8 287 426-732 138-439 (445)
65 3sfz_A APAF-1, apoptotic pepti 100.0 3E-34 1E-38 359.4 39.4 304 424-732 634-1031(1249)
66 1pgu_A Actin interacting prote 100.0 9.5E-34 3.3E-38 325.9 40.0 294 427-732 39-363 (615)
67 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-33 4.1E-38 337.5 41.6 300 426-732 34-383 (814)
68 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-33 3.9E-38 354.1 42.9 286 443-732 608-910 (1249)
69 4gga_A P55CDC, cell division c 100.0 3.2E-33 1.1E-37 309.8 41.4 270 453-732 108-392 (420)
70 3mkq_A Coatomer beta'-subunit; 100.0 7.4E-34 2.5E-38 339.3 38.5 285 442-732 5-299 (814)
71 3iz6_a 40S ribosomal protein R 100.0 1.3E-34 4.4E-39 317.1 29.3 265 425-696 86-377 (380)
72 4ggc_A P55CDC, cell division c 100.0 7.4E-33 2.5E-37 291.3 41.0 270 453-732 28-312 (318)
73 3vl1_A 26S proteasome regulato 100.0 8.1E-35 2.8E-39 319.8 27.1 274 452-732 58-362 (420)
74 4aow_A Guanine nucleotide-bind 100.0 7.7E-33 2.6E-37 294.0 41.0 269 424-696 58-339 (340)
75 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-33 8.5E-38 311.8 36.5 271 443-732 126-411 (435)
76 1sq9_A Antiviral protein SKI8; 100.0 1.8E-33 6.2E-38 306.3 33.8 266 425-696 34-397 (397)
77 3i2n_A WD repeat-containing pr 100.0 1.1E-33 3.7E-38 302.4 30.9 270 425-697 42-356 (357)
78 3bg1_A Protein SEC13 homolog; 100.0 1.3E-33 4.3E-38 301.3 30.0 249 445-693 8-292 (316)
79 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3E-32 1E-36 303.5 41.8 272 442-732 110-388 (445)
80 3dm0_A Maltose-binding peripla 100.0 1.1E-32 3.9E-37 325.4 39.9 267 423-694 401-693 (694)
81 2oaj_A Protein SNI1; WD40 repe 100.0 5.4E-33 1.8E-37 337.9 37.9 306 424-732 117-658 (902)
82 2pm7_B Protein transport prote 100.0 7.2E-33 2.5E-37 292.6 33.5 247 486-732 3-282 (297)
83 3k26_A Polycomb protein EED; W 100.0 4.1E-33 1.4E-37 298.5 30.4 264 427-694 44-366 (366)
84 3jrp_A Fusion protein of prote 100.0 1.3E-32 4.4E-37 296.1 33.6 252 443-694 4-287 (379)
85 4aez_A CDC20, WD repeat-contai 100.0 4.3E-32 1.5E-36 298.6 38.1 267 425-698 111-384 (401)
86 4gga_A P55CDC, cell division c 100.0 1.1E-31 3.9E-36 297.2 40.4 266 425-698 123-399 (420)
87 1k8k_C P40, ARP2/3 complex 41 100.0 5.1E-32 1.7E-36 291.4 36.1 269 426-696 29-363 (372)
88 3zwl_B Eukaryotic translation 100.0 2.3E-31 7.9E-36 284.7 40.6 262 426-696 53-348 (369)
89 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-32 3.7E-37 302.9 30.3 278 452-732 36-339 (402)
90 3bws_A Protein LP49; two-domai 100.0 3E-31 1E-35 292.9 38.8 296 430-732 102-429 (433)
91 3bg1_A Protein SEC13 homolog; 100.0 5.2E-33 1.8E-37 296.5 23.7 246 487-732 8-290 (316)
92 3ei3_B DNA damage-binding prot 100.0 8.4E-32 2.9E-36 293.0 32.4 259 426-694 95-382 (383)
93 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-31 7.9E-36 278.8 34.6 258 425-698 37-300 (313)
94 3jrp_A Fusion protein of prote 100.0 1.6E-31 5.6E-36 287.4 32.0 250 483-732 2-284 (379)
95 4a11_B DNA excision repair pro 100.0 6E-31 2.1E-35 285.9 35.1 279 447-732 96-402 (408)
96 4ggc_A P55CDC, cell division c 100.0 3.1E-30 1.1E-34 271.2 38.8 263 426-696 44-317 (318)
97 3dwl_C Actin-related protein 2 100.0 5.2E-32 1.8E-36 293.4 24.7 266 425-692 31-377 (377)
98 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-30 4.8E-35 282.7 34.0 274 443-732 12-333 (355)
99 3gre_A Serine/threonine-protei 100.0 9.4E-32 3.2E-36 297.9 24.8 264 457-732 34-356 (437)
100 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.4E-30 1.8E-34 286.4 37.6 272 451-731 5-387 (450)
101 4e54_B DNA damage-binding prot 100.0 7.3E-31 2.5E-35 292.4 29.9 265 426-697 141-433 (435)
102 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-30 4.5E-35 286.3 29.2 271 423-698 53-346 (402)
103 3dw8_B Serine/threonine-protei 100.0 3.5E-30 1.2E-34 284.9 31.8 261 426-693 49-445 (447)
104 1p22_A F-BOX/WD-repeat protein 100.0 4.5E-30 1.5E-34 285.5 32.8 272 426-713 152-433 (435)
105 2xyi_A Probable histone-bindin 100.0 6E-30 2E-34 284.7 33.4 245 486-732 122-407 (430)
106 3lrv_A PRE-mRNA-splicing facto 100.0 4.5E-31 1.5E-35 284.2 22.2 265 457-731 43-329 (343)
107 4h5i_A Guanine nucleotide-exch 100.0 2.1E-29 7.1E-34 274.8 35.0 262 425-695 41-344 (365)
108 2j04_B YDR362CP, TAU91; beta p 100.0 2E-31 6.8E-36 305.1 19.6 254 461-719 172-458 (524)
109 1l0q_A Surface layer protein; 100.0 9E-29 3.1E-33 269.2 39.7 262 463-732 3-272 (391)
110 1l0q_A Surface layer protein; 100.0 3.3E-28 1.1E-32 264.8 42.2 269 424-704 9-286 (391)
111 2xyi_A Probable histone-bindin 100.0 9.2E-30 3.2E-34 283.2 30.5 252 444-695 122-411 (430)
112 1yfq_A Cell cycle arrest prote 100.0 1.4E-29 4.9E-34 269.4 30.4 255 425-691 31-321 (342)
113 2j04_A TAU60, YPL007P, hypothe 100.0 2.6E-30 8.8E-35 292.4 25.0 261 449-732 14-294 (588)
114 3jro_A Fusion protein of prote 100.0 4.8E-30 1.6E-34 306.3 27.5 252 443-694 2-285 (753)
115 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-30 7.9E-35 292.7 20.5 262 425-724 65-350 (588)
116 3f3f_A Nucleoporin SEH1; struc 100.0 3E-28 1E-32 257.0 32.1 274 425-698 31-341 (351)
117 3mmy_A MRNA export factor; mRN 100.0 6.4E-28 2.2E-32 257.8 33.6 262 426-698 63-353 (368)
118 4gq1_A NUP37; propeller, trans 100.0 5.7E-29 2E-33 273.8 25.7 262 446-728 85-383 (393)
119 3jro_A Fusion protein of prote 100.0 6.1E-29 2.1E-33 296.8 25.9 247 486-732 3-282 (753)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.7E-27 1.6E-31 262.5 38.6 245 446-693 98-390 (450)
121 3vu4_A KMHSV2; beta-propeller 100.0 2E-27 6.8E-32 257.9 30.1 245 476-732 3-268 (355)
122 3bws_A Protein LP49; two-domai 100.0 6.1E-26 2.1E-30 250.3 36.8 263 425-694 142-432 (433)
123 1nir_A Nitrite reductase; hemo 100.0 8.3E-26 2.8E-30 259.8 38.9 300 426-732 158-511 (543)
124 2w18_A PALB2, fancn, partner a 100.0 2.9E-26 9.9E-31 244.9 30.6 260 425-732 61-354 (356)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.6E-26 1.2E-30 253.7 31.0 283 425-717 91-410 (415)
126 3lrv_A PRE-mRNA-splicing facto 99.9 2.9E-26 1E-30 246.5 27.3 254 423-694 54-333 (343)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.7E-25 9.3E-30 246.7 26.3 273 451-732 63-384 (415)
128 4gq1_A NUP37; propeller, trans 99.9 1E-25 3.4E-30 247.9 21.9 225 423-648 107-388 (393)
129 3vgz_A Uncharacterized protein 99.9 2.5E-23 8.4E-28 222.1 38.4 268 451-725 41-334 (353)
130 3u4y_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 222.7 36.1 274 456-732 3-301 (331)
131 1ri6_A Putative isomerase YBHE 99.9 2E-23 6.9E-28 221.3 33.8 266 464-732 7-305 (343)
132 2w18_A PALB2, fancn, partner a 99.9 1.2E-23 4.2E-28 224.7 30.6 218 447-692 108-355 (356)
133 1nir_A Nitrite reductase; hemo 99.9 1.2E-23 4E-28 241.9 32.1 268 457-732 144-455 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 9.1E-24 3.1E-28 250.1 30.2 276 450-732 36-410 (741)
135 1ri6_A Putative isomerase YBHE 99.9 1.4E-22 4.9E-27 214.7 35.9 289 425-717 13-335 (343)
136 2ojh_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 216.6 26.6 257 422-685 17-293 (297)
137 2ojh_A Uncharacterized protein 99.9 2.8E-23 9.7E-28 214.1 26.9 253 467-726 17-293 (297)
138 1pby_B Quinohemoprotein amine 99.9 1E-22 3.4E-27 215.3 30.8 262 463-732 2-307 (337)
139 3u4y_A Uncharacterized protein 99.9 5.3E-22 1.8E-26 210.6 33.7 284 425-716 18-326 (331)
140 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-22 5.5E-27 239.4 30.3 272 452-731 110-455 (741)
141 3o4h_A Acylamino-acid-releasin 99.9 1.8E-22 6E-27 232.9 29.1 268 450-732 21-312 (582)
142 1xfd_A DIP, dipeptidyl aminope 99.9 2.6E-23 8.9E-28 245.3 22.1 275 452-732 18-390 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2.5E-22 8.6E-27 236.6 30.3 273 451-732 82-432 (706)
144 1k32_A Tricorn protease; prote 99.9 2.3E-22 7.8E-27 248.3 30.4 292 426-732 182-499 (1045)
145 3hfq_A Uncharacterized protein 99.9 7E-21 2.4E-25 204.0 35.8 270 426-698 15-323 (347)
146 1k32_A Tricorn protease; prote 99.9 6.3E-22 2.2E-26 244.4 31.4 291 428-732 34-406 (1045)
147 3hfq_A Uncharacterized protein 99.9 1.4E-20 4.7E-25 201.7 34.6 260 471-731 15-313 (347)
148 1xfd_A DIP, dipeptidyl aminope 99.9 9.2E-22 3.2E-26 232.0 26.9 292 425-723 35-428 (723)
149 3scy_A Hypothetical bacterial 99.9 5E-20 1.7E-24 198.6 37.8 284 425-713 25-360 (361)
150 1jmx_B Amine dehydrogenase; ox 99.9 4.5E-21 1.5E-25 203.9 29.1 270 455-732 4-322 (349)
151 3pe7_A Oligogalacturonate lyas 99.9 4.3E-21 1.5E-25 208.3 28.4 287 442-731 22-378 (388)
152 1pby_B Quinohemoprotein amine 99.9 7.4E-21 2.5E-25 200.9 28.9 261 425-698 9-314 (337)
153 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-20 4.3E-25 222.1 29.5 258 427-696 101-437 (706)
154 3vgz_A Uncharacterized protein 99.9 1.3E-19 4.4E-24 193.2 33.2 235 492-732 40-300 (353)
155 2oit_A Nucleoporin 214KDA; NH2 99.9 3.1E-20 1.1E-24 207.4 28.3 240 450-692 36-331 (434)
156 3scy_A Hypothetical bacterial 99.9 2.6E-19 8.9E-24 193.0 33.7 268 461-731 12-333 (361)
157 1z68_A Fibroblast activation p 99.8 7.9E-21 2.7E-25 224.4 17.6 271 455-732 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 9.7E-19 3.3E-23 189.8 31.9 267 464-732 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 9E-20 3.1E-24 197.6 21.9 272 452-731 37-378 (396)
160 1z68_A Fibroblast activation p 99.8 1.4E-19 4.6E-24 213.9 20.8 297 426-732 35-440 (719)
161 1jmx_B Amine dehydrogenase; ox 99.8 3.5E-18 1.2E-22 181.5 29.6 260 426-698 20-329 (349)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.6E-18 2.6E-22 182.8 32.6 246 449-696 38-343 (365)
163 3o4h_A Acylamino-acid-releasin 99.8 5.3E-19 1.8E-23 203.8 22.5 229 492-732 21-273 (582)
164 4a5s_A Dipeptidyl peptidase 4 99.8 3E-18 1E-22 203.9 25.9 266 451-724 17-382 (740)
165 2oiz_A Aromatic amine dehydrog 99.8 2.1E-17 7.2E-22 179.8 29.0 278 426-717 30-360 (361)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 4.5E-18 1.5E-22 189.9 24.2 212 472-695 23-279 (434)
167 3azo_A Aminopeptidase; POP fam 99.8 1.5E-17 5.2E-22 194.2 27.6 281 445-731 18-363 (662)
168 2oiz_A Aromatic amine dehydrog 99.8 1E-16 3.5E-21 174.4 30.3 263 461-732 14-331 (361)
169 4a5s_A Dipeptidyl peptidase 4 99.8 7.2E-17 2.5E-21 191.9 28.3 289 426-724 35-435 (740)
170 3fvz_A Peptidyl-glycine alpha- 99.8 3.7E-16 1.3E-20 167.1 30.7 240 450-694 23-322 (329)
171 2gop_A Trilobed protease; beta 99.8 3.8E-16 1.3E-20 166.6 29.6 252 452-731 16-327 (347)
172 2dg1_A DRP35, lactonase; beta 99.7 4.3E-16 1.5E-20 165.6 29.3 267 451-725 6-300 (333)
173 1q7f_A NHL, brain tumor CG1071 99.7 3.5E-15 1.2E-19 155.2 32.9 238 447-695 26-281 (286)
174 1qks_A Cytochrome CD1 nitrite 99.7 1.9E-14 6.5E-19 165.6 41.3 300 426-732 176-535 (567)
175 1q7f_A NHL, brain tumor CG1071 99.7 5.2E-15 1.8E-19 153.8 32.8 233 490-732 27-277 (286)
176 3pe7_A Oligogalacturonate lyas 99.7 3.1E-16 1.1E-20 169.8 23.8 258 428-694 61-384 (388)
177 3azo_A Aminopeptidase; POP fam 99.7 3.4E-16 1.2E-20 182.8 25.3 266 428-700 48-375 (662)
178 2z2n_A Virginiamycin B lyase; 99.7 9.2E-14 3.2E-18 144.0 40.2 274 446-729 10-290 (299)
179 2gop_A Trilobed protease; beta 99.7 2.9E-15 9.8E-20 159.8 29.2 251 426-706 42-342 (347)
180 2dg1_A DRP35, lactonase; beta 99.7 2.7E-14 9.2E-19 151.7 36.3 245 442-693 36-315 (333)
181 3fvz_A Peptidyl-glycine alpha- 99.7 3.2E-15 1.1E-19 159.9 28.8 234 492-732 23-319 (329)
182 2xdw_A Prolyl endopeptidase; a 99.7 2.7E-15 9.1E-20 177.5 28.6 245 448-696 122-416 (710)
183 3e5z_A Putative gluconolactona 99.7 1.3E-14 4.4E-19 152.0 29.4 242 445-698 22-290 (296)
184 3dsm_A Uncharacterized protein 99.7 1.8E-14 6.1E-19 154.3 30.0 251 470-732 15-299 (328)
185 3c5m_A Oligogalacturonate lyas 99.7 2.4E-15 8.2E-20 162.7 21.9 258 428-698 61-388 (396)
186 3e5z_A Putative gluconolactona 99.7 4.4E-14 1.5E-18 147.9 29.6 238 483-730 18-282 (296)
187 1qks_A Cytochrome CD1 nitrite 99.7 2.5E-13 8.5E-18 156.4 38.2 265 460-732 165-474 (567)
188 3dsm_A Uncharacterized protein 99.7 4.5E-14 1.5E-18 151.1 29.8 280 425-712 15-319 (328)
189 2bkl_A Prolyl endopeptidase; m 99.7 3.5E-15 1.2E-19 176.1 22.7 246 448-701 118-404 (695)
190 2qc5_A Streptogramin B lactona 99.6 1.2E-12 4E-17 135.7 38.4 275 446-731 15-296 (300)
191 1rwi_B Serine/threonine-protei 99.6 8.2E-14 2.8E-18 143.0 25.8 238 452-696 25-266 (270)
192 2xdw_A Prolyl endopeptidase; a 99.6 1.5E-13 5E-18 162.5 31.1 268 460-732 81-411 (710)
193 3sjl_D Methylamine dehydrogena 99.6 1.2E-13 4E-18 150.7 27.7 271 456-732 38-360 (386)
194 2mad_H Methylamine dehydrogena 99.6 2.2E-12 7.5E-17 140.9 37.5 267 457-732 27-347 (373)
195 1rwi_B Serine/threonine-protei 99.6 1.7E-13 5.8E-18 140.6 24.9 233 494-732 25-261 (270)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.7E-12 5.8E-17 136.0 31.5 238 448-694 15-299 (314)
197 3no2_A Uncharacterized protein 99.6 8.7E-13 3E-17 138.0 29.0 241 461-711 4-272 (276)
198 2mad_H Methylamine dehydrogena 99.6 1.6E-11 5.4E-16 134.1 38.5 257 428-700 48-356 (373)
199 1yr2_A Prolyl oligopeptidase; 99.6 2.2E-13 7.6E-18 161.9 25.8 245 449-700 161-447 (741)
200 2bkl_A Prolyl endopeptidase; m 99.6 2.3E-13 7.9E-18 160.5 25.0 268 459-732 76-394 (695)
201 2z2n_A Virginiamycin B lyase; 99.5 2.5E-11 8.6E-16 125.5 36.7 239 448-696 54-297 (299)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.9E-12 1.3E-16 133.3 29.2 238 491-732 16-296 (314)
203 3sjl_D Methylamine dehydrogena 99.5 3.2E-12 1.1E-16 139.4 28.2 275 427-715 59-384 (386)
204 3c75_H MADH, methylamine dehyd 99.5 3E-12 1E-16 141.8 25.9 266 460-732 82-399 (426)
205 1yr2_A Prolyl oligopeptidase; 99.5 2.3E-12 7.8E-17 153.2 26.4 267 460-732 116-438 (741)
206 3no2_A Uncharacterized protein 99.5 6.6E-12 2.3E-16 131.2 25.7 210 503-723 4-231 (276)
207 3g4e_A Regucalcin; six bladed 99.5 8.8E-11 3E-15 123.3 34.0 228 488-723 8-260 (297)
208 3hrp_A Uncharacterized protein 99.5 3.7E-11 1.3E-15 132.8 31.2 230 493-731 131-406 (409)
209 2qc5_A Streptogramin B lactona 99.5 2.3E-10 7.9E-15 118.3 35.4 236 447-693 58-299 (300)
210 3g4e_A Regucalcin; six bladed 99.5 1.3E-10 4.6E-15 121.9 33.5 229 447-684 9-262 (297)
211 3iuj_A Prolyl endopeptidase; h 99.5 5.6E-12 1.9E-16 148.7 25.5 244 448-700 126-411 (693)
212 3hrp_A Uncharacterized protein 99.4 1E-10 3.5E-15 129.3 31.7 232 451-692 131-408 (409)
213 2qe8_A Uncharacterized protein 99.4 3.9E-12 1.3E-16 136.8 19.5 259 451-726 17-312 (343)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 4E-10 1.4E-14 120.2 34.5 221 453-685 51-293 (326)
215 3c75_H MADH, methylamine dehyd 99.4 3.1E-11 1E-15 133.7 25.5 260 427-700 99-408 (426)
216 3dr2_A Exported gluconolactona 99.4 9E-11 3.1E-15 123.6 26.9 233 446-692 40-304 (305)
217 2ghs_A AGR_C_1268P; regucalcin 99.4 5.8E-10 2E-14 118.9 33.1 221 494-724 50-291 (326)
218 3dr2_A Exported gluconolactona 99.4 8.7E-11 3E-15 123.8 26.3 235 485-730 37-302 (305)
219 1mda_H Methylamine dehydrogena 99.4 1.3E-11 4.6E-16 134.2 19.7 266 428-714 47-366 (368)
220 1xip_A Nucleoporin NUP159; bet 99.4 1E-11 3.5E-16 135.8 18.4 172 452-638 39-232 (388)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.2E-09 7.4E-14 116.1 32.5 253 461-732 102-375 (376)
222 1mda_H Methylamine dehydrogena 99.2 1.8E-10 6.1E-15 125.3 18.9 245 473-732 47-343 (368)
223 1kb0_A Quinohemoprotein alcoho 99.2 1.2E-09 4.2E-14 128.4 27.3 263 462-732 77-504 (677)
224 1yiq_A Quinohemoprotein alcoho 99.2 9.7E-10 3.3E-14 129.5 26.2 264 462-732 70-502 (689)
225 3iuj_A Prolyl endopeptidase; h 99.2 5.6E-10 1.9E-14 131.6 24.0 236 490-732 126-402 (693)
226 2hz6_A Endoplasmic reticulum t 99.2 1E-13 3.4E-18 151.2 -7.6 222 461-696 8-238 (369)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.1E-09 2.4E-13 112.0 30.6 254 462-732 53-334 (376)
228 1npe_A Nidogen, entactin; glyc 99.2 3.4E-08 1.2E-12 101.5 33.6 247 463-717 2-263 (267)
229 2ece_A 462AA long hypothetical 99.2 2E-08 6.7E-13 110.6 31.5 223 457-682 88-399 (462)
230 3hxj_A Pyrrolo-quinoline quino 99.2 1.1E-09 3.9E-14 115.2 20.8 259 451-731 60-320 (330)
231 1xip_A Nucleoporin NUP159; bet 99.2 4.8E-10 1.6E-14 122.5 17.8 170 537-723 39-232 (388)
232 1kb0_A Quinohemoprotein alcoho 99.2 3.3E-09 1.1E-13 124.7 26.3 254 461-721 127-536 (677)
233 1yiq_A Quinohemoprotein alcoho 99.2 8.7E-09 3E-13 121.4 29.3 257 461-723 120-537 (689)
234 2qe8_A Uncharacterized protein 99.1 1.9E-09 6.4E-14 115.7 18.9 220 493-732 17-275 (343)
235 1fwx_A Nitrous oxide reductase 99.1 1.6E-08 5.6E-13 114.8 25.9 234 461-698 100-435 (595)
236 1fwx_A Nitrous oxide reductase 99.1 5.6E-09 1.9E-13 118.6 21.4 257 465-724 18-407 (595)
237 3hxj_A Pyrrolo-quinoline quino 99.1 1.2E-09 4E-14 115.1 14.8 256 456-732 25-281 (330)
238 2ece_A 462AA long hypothetical 99.0 1.5E-07 5.1E-12 103.6 29.5 222 499-723 88-399 (462)
239 1kv9_A Type II quinohemoprotei 99.0 4.9E-08 1.7E-12 114.6 27.3 264 462-732 66-485 (668)
240 1npe_A Nidogen, entactin; glyc 99.0 5.5E-07 1.9E-11 92.4 31.8 222 505-732 2-235 (267)
241 2iwa_A Glutamine cyclotransfer 99.0 1.4E-07 4.7E-12 97.6 25.8 204 483-695 10-238 (266)
242 2hz6_A Endoplasmic reticulum t 99.0 4.2E-10 1.4E-14 122.5 6.4 200 503-716 8-215 (369)
243 2ad6_A Methanol dehydrogenase 98.9 2.9E-07 1E-11 105.9 28.2 263 462-732 62-491 (571)
244 2fp8_A Strictosidine synthase; 98.9 9.7E-07 3.3E-11 93.3 30.2 234 451-695 19-314 (322)
245 4a2l_A BT_4663, two-component 98.9 3.8E-06 1.3E-10 100.3 38.6 265 450-731 262-567 (795)
246 4a2l_A BT_4663, two-component 98.9 3.4E-06 1.2E-10 100.7 37.4 267 449-731 213-522 (795)
247 2p4o_A Hypothetical protein; p 98.9 2E-06 6.9E-11 90.3 30.8 233 482-725 22-278 (306)
248 2fp8_A Strictosidine synthase; 98.9 1.1E-06 3.8E-11 92.9 28.8 230 493-732 19-310 (322)
249 2iwa_A Glutamine cyclotransfer 98.8 9.2E-07 3.2E-11 91.4 26.1 201 441-650 10-238 (266)
250 1w6s_A Methanol dehydrogenase 98.8 1.2E-06 4.2E-11 101.1 30.0 265 462-732 62-500 (599)
251 3nol_A Glutamine cyclotransfer 98.8 6.8E-07 2.3E-11 91.7 23.4 192 483-684 32-245 (262)
252 3v9f_A Two-component system se 98.8 6.8E-06 2.3E-10 97.9 35.6 274 450-732 257-565 (781)
253 2p4o_A Hypothetical protein; p 98.8 7.3E-06 2.5E-10 86.0 31.1 235 442-685 24-279 (306)
254 1kv9_A Type II quinohemoprotei 98.8 1.1E-06 3.9E-11 103.0 26.8 255 462-723 117-520 (668)
255 1ijq_A LDL receptor, low-densi 98.8 4.2E-05 1.4E-09 80.8 36.4 228 464-696 3-240 (316)
256 1k3i_A Galactose oxidase precu 98.7 2.2E-07 7.5E-12 108.7 19.7 266 455-724 190-530 (656)
257 3nol_A Glutamine cyclotransfer 98.7 1.6E-06 5.4E-11 88.9 23.5 186 528-724 34-244 (262)
258 3nok_A Glutaminyl cyclase; bet 98.7 2.1E-06 7.1E-11 88.1 24.0 191 483-684 44-255 (268)
259 3v64_C Agrin; beta propeller, 98.7 1.9E-05 6.5E-10 84.9 32.6 238 450-696 33-277 (349)
260 2ad6_A Methanol dehydrogenase 98.7 4.1E-06 1.4E-10 96.3 28.5 254 462-721 115-523 (571)
261 1flg_A Protein (quinoprotein e 98.7 1E-05 3.6E-10 93.1 31.2 263 463-732 69-513 (582)
262 3mbr_X Glutamine cyclotransfer 98.7 7.7E-06 2.6E-10 83.1 26.0 185 529-723 13-222 (243)
263 3mbr_X Glutamine cyclotransfer 98.7 6.9E-06 2.4E-10 83.4 25.6 192 483-684 10-224 (243)
264 3v9f_A Two-component system se 98.7 2.9E-05 1E-09 92.4 35.1 273 450-731 162-474 (781)
265 3v65_B Low-density lipoprotein 98.7 2.2E-05 7.7E-10 85.5 31.3 237 452-697 78-321 (386)
266 3nok_A Glutaminyl cyclase; bet 98.6 3.3E-06 1.1E-10 86.6 21.6 175 538-723 57-253 (268)
267 2xbg_A YCF48-like protein; pho 98.6 8E-05 2.7E-09 79.1 33.2 265 450-732 35-319 (327)
268 3tc9_A Hypothetical hydrolase; 98.6 1.1E-05 3.9E-10 89.3 26.0 233 494-731 138-426 (430)
269 3sov_A LRP-6, low-density lipo 98.5 4.5E-05 1.5E-09 80.9 29.0 220 471-696 12-240 (318)
270 1ijq_A LDL receptor, low-densi 98.5 0.00019 6.5E-09 75.8 33.6 219 506-731 3-234 (316)
271 3p5b_L Low density lipoprotein 98.5 0.00023 7.9E-09 77.9 35.2 231 463-698 84-324 (400)
272 3v64_C Agrin; beta propeller, 98.5 0.00011 3.8E-09 78.9 31.8 228 495-730 36-270 (349)
273 1w6s_A Methanol dehydrogenase 98.5 1.5E-05 5.1E-10 92.0 26.2 251 465-722 124-534 (599)
274 2xe4_A Oligopeptidase B; hydro 98.5 7.9E-06 2.7E-10 97.1 24.6 238 452-698 175-462 (751)
275 1flg_A Protein (quinoprotein e 98.5 4.4E-05 1.5E-09 87.9 29.4 256 462-722 117-547 (582)
276 3v65_B Low-density lipoprotein 98.5 8.5E-05 2.9E-09 80.9 30.2 228 496-731 80-314 (386)
277 4hw6_A Hypothetical protein, I 98.4 7.5E-05 2.6E-09 82.8 27.2 234 494-731 140-429 (433)
278 3sov_A LRP-6, low-density lipo 98.4 0.00029 1E-08 74.6 30.5 221 506-731 6-234 (318)
279 3qqz_A Putative uncharacterize 98.4 0.00012 4E-09 75.2 26.2 199 530-731 21-249 (255)
280 3amr_A 3-phytase; beta-propell 98.4 0.00011 3.7E-09 78.4 26.4 185 461-648 39-262 (355)
281 3p5b_L Low density lipoprotein 98.4 0.00049 1.7E-08 75.3 32.8 219 506-731 85-316 (400)
282 2xe4_A Oligopeptidase B; hydro 98.4 3.9E-05 1.3E-09 91.1 25.4 192 494-692 175-398 (751)
283 3tc9_A Hypothetical hydrolase; 98.4 0.00012 4E-09 81.1 27.6 234 452-693 138-429 (430)
284 3m0c_C LDL receptor, low-densi 98.4 0.00044 1.5E-08 82.3 34.2 239 454-698 388-636 (791)
285 3qqz_A Putative uncharacterize 98.3 0.00098 3.3E-08 68.2 30.1 202 444-647 20-251 (255)
286 4hw6_A Hypothetical protein, I 98.3 0.00031 1.1E-08 77.7 28.1 235 451-693 139-432 (433)
287 1k3i_A Galactose oxidase precu 98.2 6.1E-05 2.1E-09 87.9 21.4 228 497-725 190-476 (656)
288 3kya_A Putative phosphatase; s 98.2 0.00047 1.6E-08 77.2 27.4 234 494-731 140-471 (496)
289 3m0c_C LDL receptor, low-densi 98.1 0.0025 8.6E-08 75.7 33.3 216 506-729 397-626 (791)
290 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0024 8.3E-08 74.0 32.3 219 506-731 8-233 (628)
291 3kya_A Putative phosphatase; s 98.1 0.0012 4.3E-08 73.8 27.5 241 452-698 140-479 (496)
292 2ism_A Putative oxidoreductase 98.1 0.00092 3.1E-08 71.7 25.5 225 451-681 31-332 (352)
293 3s94_A LRP-6, low-density lipo 98.0 0.0015 5E-08 75.7 28.7 223 470-697 16-246 (619)
294 2xzh_A Clathrin heavy chain 1; 98.0 0.021 7.3E-07 59.9 34.5 248 471-728 48-325 (365)
295 3s94_A LRP-6, low-density lipo 98.0 0.0068 2.3E-07 70.1 33.7 277 450-730 83-418 (619)
296 1bpo_A Protein (clathrin); cla 98.0 0.028 9.5E-07 61.2 35.2 248 471-728 47-324 (494)
297 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0083 2.8E-07 69.5 33.8 224 464-696 8-239 (628)
298 2xbg_A YCF48-like protein; pho 98.0 0.0019 6.4E-08 68.4 26.0 230 450-691 79-319 (327)
299 1n7d_A LDL receptor, low-densi 98.0 1.5E-05 5.2E-10 93.8 9.9 226 471-700 385-620 (699)
300 3a9g_A Putative uncharacterize 97.9 0.0063 2.1E-07 65.3 29.2 230 450-681 28-329 (354)
301 3ei3_A DNA damage-binding prot 97.9 0.039 1.3E-06 68.3 39.1 167 559-731 808-995 (1158)
302 2p9w_A MAL S 1 allergenic prot 97.9 0.0044 1.5E-07 65.5 25.9 202 447-650 9-266 (334)
303 3sre_A PON1, serum paraoxonase 97.9 0.0026 8.7E-08 68.3 24.4 186 495-684 52-287 (355)
304 3ott_A Two-component system se 97.9 0.032 1.1E-06 65.8 36.2 264 450-729 62-347 (758)
305 3amr_A 3-phytase; beta-propell 97.8 0.0038 1.3E-07 66.5 24.5 180 549-732 41-260 (355)
306 2ism_A Putative oxidoreductase 97.8 0.0062 2.1E-07 65.2 26.5 224 493-723 31-333 (352)
307 3ei3_A DNA damage-binding prot 97.8 0.025 8.7E-07 69.9 35.0 271 450-732 553-910 (1158)
308 2p9w_A MAL S 1 allergenic prot 97.8 0.0074 2.5E-07 63.7 25.4 209 488-698 8-269 (334)
309 3a9g_A Putative uncharacterize 97.8 0.01 3.4E-07 63.6 27.3 226 492-723 28-330 (354)
310 2g8s_A Glucose/sorbosone dehyd 97.7 0.006 2.1E-07 65.3 25.1 233 493-728 18-347 (353)
311 2xzh_A Clathrin heavy chain 1; 97.7 0.068 2.3E-06 56.2 35.9 234 455-698 71-336 (365)
312 3ott_A Two-component system se 97.7 0.12 4.2E-06 60.7 38.0 268 450-731 145-444 (758)
313 2vpj_A Kelch-like protein 12; 97.7 0.0037 1.3E-07 64.6 21.7 227 461-698 14-282 (301)
314 3das_A Putative oxidoreductase 97.7 0.041 1.4E-06 58.7 30.0 233 487-723 26-326 (347)
315 2g8s_A Glucose/sorbosone dehyd 97.7 0.0082 2.8E-07 64.3 24.5 226 452-680 19-339 (353)
316 1bpo_A Protein (clathrin); cla 97.6 0.13 4.3E-06 56.1 35.0 235 455-698 70-335 (494)
317 1n7d_A LDL receptor, low-densi 97.6 0.00018 6E-09 84.7 10.7 213 513-731 385-610 (699)
318 3ii7_A Kelch-like protein 7; p 97.5 0.019 6.5E-07 59.4 24.2 225 464-698 14-276 (306)
319 3sre_A PON1, serum paraoxonase 97.4 0.091 3.1E-06 56.2 28.5 193 452-648 51-297 (355)
320 3das_A Putative oxidoreductase 97.4 0.097 3.3E-06 55.8 28.2 235 445-681 26-325 (347)
321 2xn4_A Kelch-like protein 2; s 97.4 0.014 4.7E-07 60.3 21.1 228 462-700 16-282 (302)
322 2vpj_A Kelch-like protein 12; 97.2 0.014 4.8E-07 60.2 19.1 213 503-725 14-263 (301)
323 4asc_A Kelch repeat and BTB do 97.2 0.038 1.3E-06 57.4 22.0 226 464-700 7-283 (315)
324 3sbq_A Nitrous-oxide reductase 97.2 0.049 1.7E-06 61.0 23.2 259 465-723 73-453 (638)
325 3ii7_A Kelch-like protein 7; p 97.1 0.033 1.1E-06 57.5 21.0 211 505-725 13-257 (306)
326 2xn4_A Kelch-like protein 2; s 97.1 0.026 8.8E-07 58.2 19.9 202 514-726 30-262 (302)
327 1cru_A Protein (soluble quinop 97.1 0.2 6.9E-06 55.4 27.7 156 492-648 26-258 (454)
328 1zgk_A Kelch-like ECH-associat 97.1 0.02 6.7E-07 59.5 18.5 230 460-700 23-293 (308)
329 3s25_A Hypothetical 7-bladed b 97.0 0.16 5.4E-06 53.0 24.9 234 459-723 22-280 (302)
330 2woz_A Kelch repeat and BTB do 97.0 0.11 3.8E-06 53.9 23.2 219 473-700 25-293 (318)
331 3s25_A Hypothetical 7-bladed b 96.9 0.18 6.1E-06 52.6 23.7 177 455-650 57-256 (302)
332 3pbp_A Nucleoporin NUP82; beta 96.8 0.087 3E-06 57.3 20.3 132 598-729 40-206 (452)
333 1cru_A Protein (soluble quinop 96.7 0.9 3.1E-05 50.1 29.2 105 451-555 27-163 (454)
334 2uvk_A YJHT; unknown function, 96.7 0.03 1E-06 59.3 16.3 230 461-699 19-347 (357)
335 4asc_A Kelch repeat and BTB do 96.7 0.17 5.9E-06 52.4 21.9 209 507-725 8-253 (315)
336 1xi4_A Clathrin heavy chain; a 96.6 0.093 3.2E-06 64.9 21.2 218 471-698 47-293 (1630)
337 2woz_A Kelch repeat and BTB do 96.5 0.23 7.9E-06 51.4 21.1 203 515-725 25-263 (318)
338 2be1_A Serine/threonine-protei 96.4 0.048 1.6E-06 57.9 15.3 192 505-699 11-236 (339)
339 1zgk_A Kelch-like ECH-associat 96.3 0.14 4.6E-06 53.0 18.2 213 503-726 24-273 (308)
340 2be1_A Serine/threonine-protei 96.3 0.24 8.1E-06 52.6 19.8 187 463-651 11-233 (339)
341 3pbp_A Nucleoporin NUP82; beta 96.2 0.35 1.2E-05 52.6 20.8 143 544-690 29-208 (452)
342 1xi4_A Clathrin heavy chain; a 96.2 0.13 4.6E-06 63.5 19.1 236 455-698 70-335 (1630)
343 1tl2_A L10, protein (tachylect 96.1 0.23 7.7E-06 49.3 17.3 175 504-688 4-204 (236)
344 1tl2_A L10, protein (tachylect 96.1 0.23 7.7E-06 49.3 16.8 172 548-728 4-203 (236)
345 2uvk_A YJHT; unknown function, 95.9 0.36 1.2E-05 50.7 19.3 185 461-651 65-344 (357)
346 2zwa_A Leucine carboxyl methyl 95.8 0.25 8.7E-06 57.7 18.8 195 503-698 397-639 (695)
347 3b7f_A Glycosyl hydrolase, BNR 95.8 2.6 9E-05 44.9 27.2 255 450-713 54-391 (394)
348 3sbq_A Nitrous-oxide reductase 95.1 1.8 6.2E-05 48.5 21.4 125 537-662 324-490 (638)
349 4hvt_A Ritya.17583.B, post-pro 95.1 1.7 5.9E-05 50.7 22.6 238 455-698 133-433 (711)
350 2wg3_C Hedgehog-interacting pr 94.9 5.6 0.00019 43.8 29.7 231 452-682 15-354 (463)
351 3b7f_A Glycosyl hydrolase, BNR 94.8 5.2 0.00018 42.5 28.1 260 463-730 23-367 (394)
352 2wg3_C Hedgehog-interacting pr 94.7 6.5 0.00022 43.3 28.5 229 493-723 14-354 (463)
353 3uc1_A DNA gyrase subunit A; D 94.6 4.6 0.00016 42.3 22.3 262 463-726 4-321 (327)
354 4b8c_D Glucose-repressible alc 94.5 0.0065 2.2E-07 71.7 0.1 6 558-563 488-493 (727)
355 2zwa_A Leucine carboxyl methyl 94.5 1.1 3.8E-05 52.2 18.9 151 461-612 451-639 (695)
356 3qhy_B Beta-lactamase inhibito 94.1 0.79 2.7E-05 47.1 14.8 245 452-721 25-270 (282)
357 3qhy_B Beta-lactamase inhibito 94.0 1.3 4.6E-05 45.3 16.4 217 493-731 24-242 (282)
358 3q6k_A 43.2 kDa salivary prote 94.0 7.9 0.00027 41.4 24.1 165 559-723 124-342 (381)
359 1wp5_A Topoisomerase IV; broke 93.2 9.4 0.00032 39.9 22.8 232 460-694 3-277 (323)
360 3l6v_A GYRA, DNA gyrase subuni 92.1 14 0.00048 39.3 25.0 233 458-693 3-315 (370)
361 3kci_A Probable E3 ubiquitin-p 91.2 17 0.0006 38.5 28.1 228 495-731 55-341 (389)
362 1suu_A DNA gyrase subunit A; t 91.1 16 0.00054 37.9 27.7 230 460-692 6-281 (312)
363 3no0_A DNA gyrase subunit A; D 90.9 15 0.00052 37.3 22.1 196 494-694 25-246 (276)
364 3l6v_A GYRA, DNA gyrase subuni 90.7 19 0.00067 38.2 21.4 226 500-728 3-309 (370)
365 1zi0_A DNA gyrase subunit A; b 89.8 20 0.00068 36.9 26.1 232 460-694 1-277 (307)
366 3uc1_A DNA gyrase subunit A; D 89.6 22 0.00075 37.1 22.0 195 452-649 43-279 (327)
367 1sqj_A OXG-RCBH, oligoxylogluc 89.5 38 0.0013 39.7 26.1 147 450-598 14-190 (789)
368 4hvt_A Ritya.17583.B, post-pro 88.7 20 0.00068 41.7 20.2 223 496-723 132-415 (711)
369 1zi0_A DNA gyrase subunit A; b 85.9 34 0.0012 35.2 24.6 225 502-729 1-271 (307)
370 3no0_A DNA gyrase subunit A; D 83.6 40 0.0014 34.1 23.3 194 451-648 24-245 (276)
371 3mvd_K Regulator of chromosome 83.0 53 0.0018 35.0 35.2 227 494-731 76-370 (423)
372 1suu_A DNA gyrase subunit A; t 82.9 46 0.0016 34.2 26.3 190 502-694 6-231 (312)
373 3kci_A Probable E3 ubiquitin-p 82.5 53 0.0018 34.7 27.5 225 463-693 63-344 (389)
374 1sqj_A OXG-RCBH, oligoxylogluc 80.4 96 0.0033 36.3 26.2 144 492-638 14-188 (789)
375 1wp5_A Topoisomerase IV; broke 73.9 87 0.003 32.4 24.8 225 502-729 3-271 (323)
376 4gq2_M Nucleoporin NUP120; bet 72.1 48 0.0016 39.9 15.7 38 451-488 236-273 (950)
377 2cn3_A Xyloglucanase, beta-1,4 71.5 1.5E+02 0.0052 34.2 25.3 103 452-555 24-151 (737)
378 3q6k_A 43.2 kDa salivary prote 70.3 1.2E+02 0.004 32.3 23.3 166 472-638 123-342 (381)
379 2cn3_A Xyloglucanase, beta-1,4 67.4 1.8E+02 0.0062 33.5 24.5 60 493-554 23-91 (737)
380 4gq2_M Nucleoporin NUP120; bet 63.7 2.4E+02 0.0084 33.6 25.5 37 580-616 238-274 (950)
381 3f7f_A Nucleoporin NUP120; nuc 58.7 1E+02 0.0036 35.6 14.1 37 451-489 222-258 (729)
382 4d9s_A UVB-resistance protein 58.2 1.9E+02 0.0064 30.5 29.3 228 493-731 16-301 (406)
383 3zwu_A Alkaline phosphatase PH 53.4 98 0.0034 35.0 12.7 59 580-638 478-549 (592)
384 4d9s_A UVB-resistance protein 50.5 2.5E+02 0.0084 29.6 36.4 267 451-731 16-353 (406)
385 4h3o_A Lectin; cadmium, plant 48.1 1E+02 0.0036 25.9 9.3 25 624-649 54-78 (105)
386 3mez_B Mannose-specific lectin 47.0 1.3E+02 0.0044 25.7 9.9 59 590-649 25-84 (113)
387 1a12_A RCC1, regulator of chro 44.6 3E+02 0.01 28.8 33.2 226 493-731 59-361 (413)
388 1zvt_A Topoisomerase IV subuni 42.3 2.6E+02 0.009 27.5 14.0 142 464-608 4-163 (256)
389 1zvt_A Topoisomerase IV subuni 42.0 1.8E+02 0.0061 28.8 11.4 141 506-649 4-163 (256)
390 3zwu_A Alkaline phosphatase PH 39.9 69 0.0024 36.2 8.7 58 453-510 478-548 (592)
391 3mvd_K Regulator of chromosome 38.7 3.7E+02 0.012 28.2 30.4 186 537-731 76-318 (423)
392 2zux_A YESW protein; beta-prop 38.0 4.7E+02 0.016 29.2 28.6 229 449-696 177-481 (591)
393 1m3w_A H10H24; four-helix bund 36.8 14 0.00048 23.3 1.3 10 44-53 21-30 (32)
394 4a9v_A PHOX; hydrolase, beta-p 36.7 1E+02 0.0035 34.7 9.2 60 579-638 477-549 (592)
395 4a9v_A PHOX; hydrolase, beta-p 35.2 1.3E+02 0.0043 34.0 9.6 59 452-510 477-548 (592)
396 4fhn_B Nucleoporin NUP120; pro 33.9 31 0.001 42.4 4.9 39 451-489 238-276 (1139)
397 4fhn_B Nucleoporin NUP120; pro 30.5 1.3E+02 0.0045 36.7 9.8 34 665-698 239-272 (1139)
398 3f7f_A Nucleoporin NUP120; nuc 27.8 7.5E+02 0.026 28.5 16.3 37 537-576 223-259 (729)
399 3dzw_A Agglutinin; lectin, man 25.0 3E+02 0.01 23.0 9.7 25 624-649 53-77 (109)
400 2zux_A YESW protein; beta-prop 24.1 7.8E+02 0.027 27.5 20.7 153 534-698 177-404 (591)
401 3of7_A Regulator of chromosome 23.1 7E+02 0.024 26.5 26.3 191 493-693 148-404 (473)
402 3mez_A Mannose-specific lectin 22.1 1.1E+02 0.0038 26.0 5.1 24 624-647 53-76 (111)
403 3of7_A Regulator of chromosome 22.0 7.3E+02 0.025 26.4 26.9 184 536-731 148-401 (473)
404 1b2p_A Protein (lectin); manno 20.2 4.1E+02 0.014 22.7 11.3 24 624-648 64-87 (119)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-42 Score=375.26 Aligned_cols=288 Identities=19% Similarity=0.364 Sum_probs=263.6
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+.....+.+|.+.|++++|+||+++|++|+.|++|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEE
Q 004737 520 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 520 Dl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~ 595 (732)
|+.+.. .....+.+|...|.++.|++++ .+++++.|+.|++||+++++++..+.. ...+.+++|+|++..++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 998754 2356788999999999999875 366889999999999999999888874 4579999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CCCceEEEEEe
Q 004737 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH 672 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fs 672 (732)
+.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||+++. ..+..+.. +...|.+++|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEEC
Confidence 9999999999999999999999999999999999999999999 999999999886 45555443 23479999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 673 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 673 pdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999988877 7789999999999999999999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-43 Score=389.88 Aligned_cols=285 Identities=26% Similarity=0.482 Sum_probs=267.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
...+.+|.+.|++++|+|++.+|++|+.|++|+|||+.+++....+.+|.+.|++++|+|++++|++|+.|++|+|||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
+.. .+..+.+|...|.+++|+|++ .++++|+.|+.|++||++++.++..+..+ ..+.++.|++++..+++++.|+.|
T Consensus 181 ~~~-~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 181 GFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp SSC-EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCc-eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 765 578889999999999999996 45669999999999999999999888754 458999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCC--------------------CCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spd--------------------g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
++||++++++...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~ 335 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV 335 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEE
Confidence 99999999999999999999999999996 67899999 999999999987 7888999
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 99999999999999999999999999999999988766 7779999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-42 Score=366.32 Aligned_cols=285 Identities=18% Similarity=0.330 Sum_probs=261.0
Q ss_pred EEEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737 443 FQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 516 (732)
+..+.+|.+.|++|+|+++ +.+|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4567899999999999985 67999999999999999987654 45688999999999999999999999999999
Q ss_pred EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEE
Q 004737 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAA 595 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~ 595 (732)
++||+.+++ .+..+..|...+.+++|+|++ .+|++++.|+.|++||+++++....+..+ ..+.+++|+|++.+|+++
T Consensus 105 ~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGK-QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTE-EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCC-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999876 477788899999999999997 46668999999999999999888777654 458999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|++||+++. .++..+..|...|.+++|+|+
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECCC
Confidence 9999999999999999999999999999999999999999999 999999999887 677888899999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.+|++++.|+.|++||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999999999999999999888 7779999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.9e-41 Score=365.78 Aligned_cols=288 Identities=17% Similarity=0.279 Sum_probs=260.3
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
.....+.+|.+.|+|++|+||+++||+|+.|++|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-----ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeC--CCCEE
Q 004737 521 TENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGRI 592 (732)
Q Consensus 521 l~s~~-----~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp--~g~~l 592 (732)
+.... .....+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.. ...+.+++|+| ++..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 86432 23467788999999999999964 556899999999999999999988875 45688999987 46899
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--CCceEEE
Q 004737 593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHSC 669 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl 669 (732)
++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |++|++||++.. ..+..+..+ ...+.++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEE
Confidence 9999999999999999999999999999999999999999999999 999999999876 444444432 3478999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||.|+||+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999988877 7779999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-42 Score=377.00 Aligned_cols=289 Identities=17% Similarity=0.337 Sum_probs=259.1
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
....++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------ccCCeeEEEEeC-
Q 004737 521 TENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQP- 587 (732)
Q Consensus 521 l~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------~~~~i~~v~~sp- 587 (732)
+.+.. .....+.+|.+.|.++.|.|++...|++|+.|+.|++||+.+++++..+. +...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 87532 12456789999999999999877788899999999999999999887763 345689999977
Q ss_pred CCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC--
Q 004737 588 RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-- 663 (732)
Q Consensus 588 ~g~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~-- 663 (732)
++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++ .++..+..+.
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~ 293 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDR 293 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccccc
Confidence 77899999999999999998 4577888999999999999999999999999 999999999987 5555554332
Q ss_pred -----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 664 -----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 664 -----~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..|.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||.|+||+
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 24889999999999999999999999999988876 44 57999999999999999999999999999996
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.8e-40 Score=349.67 Aligned_cols=283 Identities=18% Similarity=0.316 Sum_probs=253.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
..+++.+|.+.|++++|+|++++|++++.||+|+|||+++++.+..+..|...|.+++|+|++++|++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe-ccCCeeEEEEeC-CCCEEEEEEcC
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE 598 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~-~~~~i~~v~~sp-~g~~ll~~s~d 598 (732)
.++. .+..+.+|...|.+++|+|++ .++++|+.|+.|++||++++ .+...+. +...|.+++|+| ++..+++++.|
T Consensus 85 ~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 85 NTGE-KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCc-EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 9876 578889999999999999996 56679999999999999877 4445554 445699999999 56889999999
Q ss_pred CeEEEEECCCCeEEEEEc-CCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 599 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~-~h~~~V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
+.|++||+++......+. +|...|..++|+| ++.+|++++ |++|++||++++ .++..+..|...|.+++|+|+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCC
Confidence 999999998876655554 4668899999987 678999999 999999999987 888999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC--EEEEEECCCeEE
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 729 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~--~LaSgs~DG~I~ 729 (732)
+.+|++++.|+.|++||+.+++.+ .+..|...+++++|+|++. +|++|+.||.+.
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999888 7778999999999999885 688888777543
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-39 Score=348.86 Aligned_cols=288 Identities=19% Similarity=0.335 Sum_probs=250.6
Q ss_pred ceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCC-----CeEEEEeccCCCceEEEEEcCCCCeEEEEe
Q 004737 438 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS 511 (732)
Q Consensus 438 ~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs 511 (732)
..+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 4456677899999999999999965 8999999999999999863 345678899999999999999999999999
Q ss_pred CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC---
Q 004737 512 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR--- 588 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~--- 588 (732)
.|++|+|||+.+++ .+..+.+|...|.+++|+|++ .++++++.|+.|++||++.........+...+.++.|.|.
T Consensus 85 ~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 WDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred CCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 99999999999876 578899999999999999986 5667999999999999985443333345567999999985
Q ss_pred ---CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004737 589 ---LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 664 (732)
Q Consensus 589 ---g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~ 664 (732)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++ |+.|++||+.+. .++..+.. ..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~ 238 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QD 238 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CS
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CC
Confidence 44799999999999999999999999999999999999999999999999 999999999987 66666664 46
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE--------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.|.+++|+|++.++++++. +.+++|++.....+ .+ ..|...|.+++|+|++++|++|+.||.|+|||
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 8999999999998877665 56999999887765 22 23567899999999999999999999999996
No 8
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-40 Score=360.31 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC------------------ceEEEEEcCCCCeEEE
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 509 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------------------~V~~l~fspdg~~Las 509 (732)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 78999999999998888765532 4999999999999999
Q ss_pred EeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeC-C
Q 004737 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 588 (732)
Q Consensus 510 gs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp-~ 588 (732)
|+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999865 5778899999999999999975 56699999999999999999999998888999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC--------
Q 004737 589 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 652 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t~~~i~~l-------~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-------- 652 (732)
+.++++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887766 57899999999999999999999 99999999976421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeC------CCCEEEEEEC
Q 004737 653 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 724 (732)
Q Consensus 653 -~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~sp------dg~~LaSgs~ 724 (732)
..+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+|++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999999887 7779999999999986 6789999999
Q ss_pred CCeEEEeC
Q 004737 725 DKCVKIWK 732 (732)
Q Consensus 725 DG~I~IWD 732 (732)
||.|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=352.83 Aligned_cols=292 Identities=25% Similarity=0.450 Sum_probs=249.5
Q ss_pred eEEEEEecCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE---EeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737 440 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 515 (732)
Q Consensus 440 ~~~v~~l~~H~~-~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~---~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 515 (732)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||++++.... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456778999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEe-ccCCeeEEEEeCCCC
Q 004737 516 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK-CQSGATQMRFQPRLG 590 (732)
Q Consensus 516 I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---~i~~~~-~~~~i~~v~~sp~g~ 590 (732)
|+|||+..... .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+..+. ++..+. +...+.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987653 467889999999999999996 567799999999999998764 334443 345699999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------------cee
Q 004737 591 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 655 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------------~~~ 655 (732)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++++|++++ |++|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998875 5578889999999999999999999999 99999999743221 133
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EE--EEccCCCCeeEEEEeCCC-CEEEEEE
Q 004737 656 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 723 (732)
Q Consensus 656 i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------~~--~~~~h~~~V~sla~spdg-~~LaSgs 723 (732)
+..+.. |...|.+++|+|++..|++++.|+.|++|+..... .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 444444 77889999999999999999999999999987542 11 234899999999999998 4999999
Q ss_pred CCCeEEEeC
Q 004737 724 HDKCVKIWK 732 (732)
Q Consensus 724 ~DG~I~IWD 732 (732)
.||.|+|||
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.6e-39 Score=340.10 Aligned_cols=288 Identities=24% Similarity=0.458 Sum_probs=258.5
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+....++.+|.+.|++++|+|++++|++|+.|+.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d 598 (732)
|+.++. .+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999876 578889999999999999996 5667999999999999999998888774 4569999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE---EEEEeC
Q 004737 599 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 673 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~---sl~fsp 673 (732)
+.|++||+++++.+..+. .+...+.+++|+|++++|++++ |+.|++||++++ .++..+..+...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999887 67777777665432 233446
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEE--CCCeEEEeC
Q 004737 674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs--~DG~I~IWD 732 (732)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999888 7789999999999999999999997 699999996
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-39 Score=380.33 Aligned_cols=302 Identities=20% Similarity=0.303 Sum_probs=256.4
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-------cCCCce
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWI 495 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------~h~~~V 495 (732)
.+.|..+++|+...+ ..+..+.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.+..+. +|.+.|
T Consensus 166 ~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp EETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred EeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 456788999997665 4567789999999999999999999999999999999999999988884 799999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEecCCCCce------------------------------------------eEEeec
Q 004737 496 TDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------------------------------LRTFTG 533 (732)
Q Consensus 496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~------------------------------------------~~~l~~ 533 (732)
++++|+|++++|++++.|++|+|||+.+++.. ...+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 99999999999999999999999999865421 234468
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE---------------------------------------
Q 004737 534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--------------------------------------- 574 (732)
Q Consensus 534 h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--------------------------------------- 574 (732)
|...|++++|+|++. +|++++.|+.|++||+.++++...+
T Consensus 323 h~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 323 HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence 999999999999974 5669999999999999876543221
Q ss_pred --------------------------------------------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 575 --------------------------------------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 610 (732)
Q Consensus 575 --------------------------------------------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~ 610 (732)
.+...+.+++|+|++.++++++.|+.|++||+.++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence 011235789999999999999999999999998765
Q ss_pred E--EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCC
Q 004737 611 C--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYE 685 (732)
Q Consensus 611 ~--i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~--~~~~~~~I~sl~fspdg~~L~sgs~dg 685 (732)
. +.. .+|...|++++|+|++++|++++ |++|++||+.+.. +++.. +..|...|.+++|+|++++|++++.|+
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~ 558 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 558 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCC
Confidence 3 233 56999999999999999999999 9999999998621 33322 334889999999999999999999999
Q ss_pred eEEEEECCCCe--E-EEEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 686 TLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 686 ~I~IwDl~t~~--~-~~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+|++||+.++. . ..+.+| ...|.+++|+|++. |++++.|++|++||
T Consensus 559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 99999998764 2 355688 89999999999998 99999999999996
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.6e-39 Score=346.94 Aligned_cols=286 Identities=19% Similarity=0.356 Sum_probs=242.2
Q ss_pred eEEEEEecCCCCCeEEEEE-----cC-CCCEEEEEECCCcEEEEEcCC-------CeEEEEeccCCCceEEEEEcCCCCe
Q 004737 440 FTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSR 506 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~laf-----Sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~V~~l~fspdg~~ 506 (732)
+.....+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4456789999999999999 77 999999999999999999874 3456788999999999999999999
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE---eccCCeeEE
Q 004737 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQM 583 (732)
Q Consensus 507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~---~~~~~i~~v 583 (732)
|++++.|++|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+......... .+...+.++
T Consensus 91 l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred EEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee
Confidence 9999999999999999876 5788899999999999999975 5668999999999999843332222 234569999
Q ss_pred EEeCCC----------CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 584 RFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 584 ~~sp~g----------~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
+|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|++||+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~- 246 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT- 246 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS-
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc-
Confidence 999986 6899999999999999 45677778889999999999999999999999 9999999995442
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEc-----------cCCCCeeEEEEeCCCCE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNGM 718 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~---~~~-----------~h~~~V~sla~spdg~~ 718 (732)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|++++
T Consensus 247 -~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 247 -YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp -SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred -ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 222222 2456799999999998665 556888999999876532 222 67889999999999999
Q ss_pred EEEEECCCeEEEeC
Q 004737 719 VASASHDKCVKIWK 732 (732)
Q Consensus 719 LaSgs~DG~I~IWD 732 (732)
|++|+.||.|+|||
T Consensus 324 l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 324 LFAGFTDGVIRTFS 337 (343)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEecCCceEEEEE
Confidence 99999999999996
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.4e-39 Score=377.30 Aligned_cols=296 Identities=18% Similarity=0.272 Sum_probs=250.5
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 506 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~ 506 (732)
.+++|+ .+. ....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++....+.+|...|++++|+|++++
T Consensus 130 ~v~~wd--~~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 130 HVFLFD--TGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp EEEETT--TCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEee--CCC---CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE
Confidence 455555 443 3456889999999999999987 5999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEee-------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----
Q 004737 507 LATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---- 575 (732)
Q Consensus 507 Lasgs~Dg~I~IWDl~s~~~~~~~l~-------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---- 575 (732)
|++++.|++|+|||+.++.. ...+. +|.+.|.+++|+|++ .+|++++.|++|++||+.+++++..+.
T Consensus 205 las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp EEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 99999999999999988764 55553 799999999999997 566699999999999999887665432
Q ss_pred ----------------------------------------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737 576 ----------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 615 (732)
Q Consensus 576 ----------------------------------------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l 615 (732)
+...|.+++|+|++.+|++++.|+.|++||+.++.+...+
T Consensus 283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362 (611)
T ss_dssp GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence 2345899999999999999999999999999876543221
Q ss_pred -c------------------------------------------------------------------------------
Q 004737 616 -Q------------------------------------------------------------------------------ 616 (732)
Q Consensus 616 -~------------------------------------------------------------------------------ 616 (732)
.
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence 0
Q ss_pred ---CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 617 ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 617 ---~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
.|...+.+++|+|++++|++++ |++|++||+.+... ..+.. ..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 0234578899999999999999 99999999976521 22333 678899999999999999999999999999999
Q ss_pred CC-CeEEE---EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 693 TE-NKTLT---LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 693 ~t-~~~~~---~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+ ++... +..|...|++++|+||+++|++|+.|++|+|||
T Consensus 521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 87 55542 234999999999999999999999999999996
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=341.44 Aligned_cols=288 Identities=21% Similarity=0.321 Sum_probs=236.7
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEe-cc-CCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l-~~-h~~~V~~l~fspdg~~Lasgs~Dg~I 516 (732)
..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ +....+ .+ |...|.+++|+|++++|++|+.|++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 456788999999999999988 9999999999999999874 455666 44 99999999999999999999999999
Q ss_pred EEEecCCC------CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEe-ccCCeeEEEE
Q 004737 517 RVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRF 585 (732)
Q Consensus 517 ~IWDl~s~------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~-~~~~i~~v~~ 585 (732)
+|||+... ...+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++. .+++..+. +...|.+++|
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 99998632 12456788999999999999996 5677999999999999943 24555555 4466999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCC--CCEEEEEe-CCeEEEEECCCCCC-----cee
Q 004737 586 QPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSK-----GEC 655 (732)
Q Consensus 586 sp~g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~spd--g~~Lasgs-Dg~I~IWDl~t~~~-----~~~ 655 (732)
+|++..|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+..... ..+
T Consensus 162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 999999999999999999999876 678889999999999999998 67899988 99999999875421 123
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--E-E-EccCCC-CeeEEEEeC--CCCEEEEEECCCe
Q 004737 656 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L-T-LSAHDK-LVSSLAAST--VNGMVASASHDKC 727 (732)
Q Consensus 656 i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~--~-~-~~~h~~-~V~sla~sp--dg~~LaSgs~DG~ 727 (732)
...+.. |...|.+++|++++ +|++++.|+.|++||..+++. . . ...|.. .|.+++|+| ++.+|++|+.||.
T Consensus 242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 444444 78899999999766 799999999999999988742 3 2 347877 899999999 6889999999999
Q ss_pred EEEeC
Q 004737 728 VKIWK 732 (732)
Q Consensus 728 I~IWD 732 (732)
|+|||
T Consensus 321 v~~W~ 325 (330)
T 2hes_X 321 VNFWS 325 (330)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=349.16 Aligned_cols=279 Identities=15% Similarity=0.210 Sum_probs=235.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-----------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 516 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I 516 (732)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5677799999999999999888 77888887321 01111122356789999999984 78899999999
Q ss_pred EEEecCCCCcee---EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCC-E
Q 004737 517 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 591 (732)
Q Consensus 517 ~IWDl~s~~~~~---~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~-~ 591 (732)
+|||+.+++... ..+.+|.+.|++++|+|++ .+|++|+.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 2356899999999999997 5666999999999999999999998874 56799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 667 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~ 667 (732)
+++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|++||++++ +++..+..|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998887764 35667999999995 56888888 999999999987 77888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEeC
Q 004737 668 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 732 (732)
Q Consensus 668 sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWD 732 (732)
+++|+|++ .+|++++.|+.|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 677999999999995
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-38 Score=358.79 Aligned_cols=295 Identities=27% Similarity=0.454 Sum_probs=261.2
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
..|..+++|+... ..+..+.+|...|++++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|+
T Consensus 281 ~~d~~i~~w~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 281 SDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPD 355 (577)
T ss_dssp ETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTT
T ss_pred eCCCEEEEEeCCC----cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCC
Confidence 4567788998643 24567889999999999999999999999999999999765 456678899999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeE
Q 004737 504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 582 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~ 582 (732)
+++|++++.|+.|++||... ..+..+.+|...|.+++|+|++.. |++++.|+.|++||.. ++.+..+. +...+.+
T Consensus 356 g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 431 (577)
T ss_dssp SSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEE
T ss_pred CCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEE
Confidence 99999999999999999653 357788899999999999999754 5588899999999965 56666555 4567999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 661 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~ 661 (732)
++|+|++.++++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ |+.|++||.. + +++..+..
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~ 506 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTG 506 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeC
Confidence 999999999999999999999996 5677888889999999999999999999999 9999999964 3 67888999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|...|++++|+|++++|++++.|+.|++||........+.+|...|++++|+||+++|+|++.|++|+|||
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999999999975444448889999999999999999999999999999998
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-39 Score=351.15 Aligned_cols=282 Identities=13% Similarity=0.163 Sum_probs=236.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCeEE----EEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRT 515 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~------Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~ 515 (732)
...|.+.|++++|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4579999999999999999999997 778999998776543 33456889999999999975 556788999
Q ss_pred EEEEecCCCCcee---EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCC-
Q 004737 516 VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG- 590 (732)
Q Consensus 516 I~IWDl~s~~~~~---~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~- 590 (732)
|+|||+.+++... ....+|...|++++|+|++ .+|++++.|+.|++||+++++++..+.. ...+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999998765322 2455899999999999997 4566999999999999999999988874 45699999999875
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce
Q 004737 591 RILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 666 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t~~~i~~l--~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I 666 (732)
.+++++.|+.|++||++++++...+ ..|...+.+++|+|+ +.+|++++ |+.|++||++++ .++..+..+...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6888999999999999998766544 346778999999997 46788888 999999999887 6778888999999
Q ss_pred EEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeC-CCCEEEEEECCCeEEEeC
Q 004737 667 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 732 (732)
Q Consensus 667 ~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWD 732 (732)
++++|+|++ .+|++++.|+.|+|||+.+++++...+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 789999999999999996
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-38 Score=335.62 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=254.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
....+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeee-----------eEEe-ccC--CeeE
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GATQ 582 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i-----------~~~~-~~~--~i~~ 582 (732)
.++.. +..+. |...|.+++|+|++.. +++++.+ +.|++||+...... ..+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98763 55555 8889999999999755 4566667 99999999765422 2222 222 7999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737 583 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
++|+|++..+++++.||.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788889999999999999999999999999 999999999987 5555555
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 661 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~L~sgs~dg--------------~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
+...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 678899999999999999999988 8999999999888 777899999999999999999999999
Q ss_pred CeEEEeC
Q 004737 726 KCVKIWK 732 (732)
Q Consensus 726 G~I~IWD 732 (732)
|.|+|||
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.2e-37 Score=327.00 Aligned_cols=287 Identities=19% Similarity=0.339 Sum_probs=246.4
Q ss_pred eeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCC-----eEEEEeccCCCceEEEEEcCCCCeEEEEeC
Q 004737 439 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 512 (732)
Q Consensus 439 ~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~-----~~~~~l~~h~~~V~~l~fspdg~~Lasgs~ 512 (732)
.+....+|+||.+.|+||+|+|+ +++||||+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 33455679999999999999997 689999999999999998754 356778999999999999999999999999
Q ss_pred CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCC-
Q 004737 513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 589 (732)
Q Consensus 513 Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g- 589 (732)
|+.|++|+..... .......+...+..+.+++++. ++++++.|+.+++||+.......... +...+..++|++++
T Consensus 107 d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccc-eeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999765 4666777888899999999865 55689999999999998665443322 34568889998764
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737 590 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 667 (732)
Q Consensus 590 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~ 667 (732)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. .++..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 4678889999999999999999999999999999999999999999999 999999999987 66666654 46799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E---------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~---------~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++|+|++. +++++.|+.|++||++++..+ . ...|...|++++|+|++++|++|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999886 667778999999999988765 2 236889999999999999999999999999997
No 20
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-39 Score=353.38 Aligned_cols=305 Identities=16% Similarity=0.207 Sum_probs=266.1
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----CeEEEEeccCCCceEEEE
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVR 499 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~l~ 499 (732)
..|..+++|+..++.....+..+ .|...|++++|+|++++|++++.|+.|+|||+.+ .+.+..+.+|...|++++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 56788999999887543333333 5899999999999999999999999999999987 458888999999999999
Q ss_pred EcCC-CCeEEEEeCCCeEEEEecCCCC------cee--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 500 FSPS-LSRLATSSADRTVRVWDTENPD------YSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 500 fspd-g~~Lasgs~Dg~I~IWDl~s~~------~~~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
|+|+ +.+|++++.|+.|++||+.+.. ... ..+..|...|.+++|+|++..++++++.|+.|++||++++++
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 8999999999999999999865 222 234679999999999999778888999999999999999999
Q ss_pred eeEEec-------cCCeeEEEEeCCC-CEEEEEEcCC---eEEEEECCCC-eEEEEEc-CCCCCEEEEEEeC-CCCEEEE
Q 004737 571 AGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVETQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLAS 636 (732)
Q Consensus 571 i~~~~~-------~~~i~~v~~sp~g-~~ll~~s~dg---~I~IwDl~t~-~~i~~l~-~h~~~V~sla~sp-dg~~Las 636 (732)
+..+.. ...+.+++|+|++ ..+++++.++ .|++||++++ .++..+. +|...|.+++|+| ++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 888875 4669999999997 5788888888 9999999986 6667777 8999999999999 8999999
Q ss_pred Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EE-------------
Q 004737 637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TL------------- 700 (732)
Q Consensus 637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~-~~------------- 700 (732)
++ |+.|++||++++ +++..+..|...|.+++|+|++ .+|++++.|+.|++||+.+.... ..
T Consensus 281 ~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 281 SGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 99 999999999987 7788888999999999999999 89999999999999999876532 10
Q ss_pred -c---------------------cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 701 -S---------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 701 -~---------------------~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
. .|...+.+++|+|++++|++++.||.|+|||
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 0 1667888999999999999999999999997
No 21
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.2e-38 Score=340.66 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=255.2
Q ss_pred EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe------EEEEeccCCCceEEEEEcCC----C---CeE
Q 004737 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SRL 507 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~V~~l~fspd----g---~~L 507 (732)
.....+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677899999999999998 799999999999999999887 78888899999999999999 9 999
Q ss_pred EEEeCCCeEEEEecCCCCc----eeEEeecC-----CcceEEEEEc----CCCCcEEEEEeCCCcEEEEECCC------C
Q 004737 508 ATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------G 568 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~----~~~~l~~h-----~~~V~sl~fs----pdg~~llaSgs~Dg~I~iWDl~t------~ 568 (732)
++++.|+.|++||+.+... ....+..| ...|.+++|+ |++..+|++++.||.|++||+.+ +
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999987653 16677788 5899999999 98765377899999999999998 6
Q ss_pred eeee-----EEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C---CCCEEEEEEeC
Q 004737 569 SCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWNT 629 (732)
Q Consensus 569 ~~i~-----~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h---~~~V~sla~sp 629 (732)
+.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 6665 554 35679999999999 999999999999999999999999998 8 99999999999
Q ss_pred CCCEEEEEe-C---CeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 630 SGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 630 dg~~Lasgs-D---g~I~IWDl~t~~~~~~i~~~~~-------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999998 8 89999999987 67777877 8999999999999999999999999999999
Q ss_pred CCCeEE-EEc------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCeEEEeC
Q 004737 693 TENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 732 (732)
Q Consensus 693 ~t~~~~-~~~------~h---------------~~~V~sla~spdg----------~~LaSgs~DG~I~IWD 732 (732)
.+++.+ .+. .| ...|++++|+|++ .+|++++.||.|+|||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999887 666 67 8999999999998 7999999999999996
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.1e-36 Score=349.33 Aligned_cols=295 Identities=26% Similarity=0.450 Sum_probs=262.6
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 503 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd 503 (732)
..|..+++|+... ..+..+.+|...|++++|+||+++|++++.|+.|++||. +++....+.+|...|++++|+|+
T Consensus 240 ~~d~~i~~w~~~~----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~ 314 (577)
T 2ymu_A 240 SDDKTVKLWNRNG----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 314 (577)
T ss_dssp ETTSCEEEECTTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT
T ss_pred eCCCEEEEEeCCC----CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC
Confidence 4567788898543 356678999999999999999999999999999999996 45778889999999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeE
Q 004737 504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 582 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~ 582 (732)
+.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.|+.|++||.. ++++..+. +...+.+
T Consensus 315 ~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 315 GQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 390 (577)
T ss_dssp SSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEE
Confidence 999999999999999998753 4677889999999999999975 56689999999999965 56666665 4567999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 661 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~ 661 (732)
++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ |+.|++||... ..+..+..
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~ 465 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTG 465 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcC
Confidence 999999999999999999999995 5677888899999999999999999999999 99999999743 57778889
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|++++|++++.||.|+|||
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 99999999999999999999999999999975544448889999999999999999999999999999997
No 23
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-37 Score=335.67 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=249.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
|.+.|++++|+|++++|++++.|+.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++. .+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~ 184 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VM 184 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EE
Confidence 788999999999999999999999999999 6778889999999999999999999999999999999999998865 46
Q ss_pred EEeecCCcc---------------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEE
Q 004737 529 RTFTGHSTT---------------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRI 592 (732)
Q Consensus 529 ~~l~~h~~~---------------V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l 592 (732)
..+..+... +.+++|++++ .+++++.|+.|++||+.+++.+..+. +...+.+++|+|++..|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 667767666 9999999974 46688889999999999988887775 45679999999999999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
++++.|+.|++||+++++.+..+..|...|.+++|+|++ +|++++ |+.|++||+.++ ..+..+..+...|.+++|
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRI 338 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEE
Confidence 999999999999999999888999999999999999999 888888 999999999887 788888889999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCe--------------------EE-EEccCCC--CeeEEEEeCCCCEEEEEECCCeE
Q 004737 672 HPTFPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 672 spdg~~L~sgs~dg~I~IwDl~t~~--------------------~~-~~~~h~~--~V~sla~spdg~~LaSgs~DG~I 728 (732)
+|++.+|++++.|+.|++||+.+++ .+ .+..|.. .|++++|+|++++|++++.||.|
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 9999999999999999999998877 55 6778866 99999999999999999999999
Q ss_pred EEeC
Q 004737 729 KIWK 732 (732)
Q Consensus 729 ~IWD 732 (732)
+|||
T Consensus 419 ~iw~ 422 (425)
T 1r5m_A 419 SVVA 422 (425)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-36 Score=322.39 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=250.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE---EEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
..+|.+.|++++|+|++++|++++ |+.|+|||+.+++. ...+. .|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999999 99999999987643 23333 7999999999999999999999999999999
Q ss_pred cCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC
Q 004737 521 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 521 l~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d 598 (732)
+.++.. ....+..|...|.+++|+|++ .++++++.|+.|++||+++++.+..+.. ...+.+++|+|++..+++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 998653 345678899999999999986 5566888999999999999998888874 5679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
+.|++||+++++.+..+. +...+.+++|+|++++|++++ |+.|++||+.+.. ...+..|...|.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence 999999999998888775 788999999999999999999 9999999998863 3456778899999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 678 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=326.70 Aligned_cols=263 Identities=18% Similarity=0.259 Sum_probs=240.8
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg 504 (732)
.|..+++|++..+. ......+.+|...|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++
T Consensus 56 ~D~~v~vW~~~~~~-~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg 134 (321)
T 3ow8_A 56 LDDLVKVWKWRDER-LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134 (321)
T ss_dssp TTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred CCCCEEEEECCCCC-eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence 35667777776543 33455789999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM 583 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v 583 (732)
++|++++.|+.|++||++++. ....+..|...|.+++|+|++ .+|++++.|+.|++||+++++++..+.. ...+.++
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL 212 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred CEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE
Confidence 999999999999999999876 466778899999999999997 5666999999999999999999988874 4569999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 662 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~ 662 (732)
+|+|++.+|++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+..|
T Consensus 213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~h 289 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFDH 289 (321)
T ss_dssp EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCC
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999887 888999999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 663 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 290 ~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 290 QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999964
No 26
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-37 Score=343.75 Aligned_cols=260 Identities=24% Similarity=0.464 Sum_probs=237.9
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..++. .+..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.
T Consensus 129 Dg~i~vwd~~~~~---~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~ 205 (410)
T 1vyh_C 129 DATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205 (410)
T ss_dssp SSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence 5667778877764 3567889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 584 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~ 584 (732)
+|++|+.|++|++||+.++. .+..+.+|...|.++.|+|++ .++++|+.|+.|++||+.++++...+.. ...+.+++
T Consensus 206 ~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 283 (410)
T 1vyh_C 206 HIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 283 (410)
T ss_dssp EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEE
Confidence 99999999999999999876 578899999999999999996 5677999999999999999998887764 45699999
Q ss_pred EeCC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737 585 FQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 643 (732)
Q Consensus 585 ~sp~--------------------g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~ 643 (732)
|+|+ +.++++++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9996 56899999999999999999999999999999999999999999999999 99999
Q ss_pred EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
+||+.++ .++..+..|...|++++|+|++.+|++++.|+.|++|+++
T Consensus 364 vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 364 VWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999877 6778888999999999999999999999999999999863
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.7e-37 Score=330.84 Aligned_cols=282 Identities=15% Similarity=0.190 Sum_probs=247.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
+..|.++|++++|+|++++|++++.|+.|+|||+.+++ .+..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEe--ccCCeeEEEEeCCCCEEEEEEc
Q 004737 524 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 597 (732)
Q Consensus 524 ~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~---i~~~~--~~~~i~~v~~sp~g~~ll~~s~ 597 (732)
+... ...+..|...|.+++|+|++ .++++++.|+.|++||++.+.. ...+. +...+.+++|+|++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 23447799999999999996 5666888999999999988763 22332 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737 598 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 598 dg~I~IwDl------------------~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~ 658 (732)
|+.|++||+ ..++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999887 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeE---------------------------------------
Q 004737 659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 697 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t--~~~--------------------------------------- 697 (732)
+..+...|.+++|+|++.+++++ .|+.|++|++.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 531
Q ss_pred EEE-ccCCCCeeEEEEe-CCC---CEEEEEECCCeEEEeC
Q 004737 698 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 732 (732)
Q Consensus 698 ~~~-~~h~~~V~sla~s-pdg---~~LaSgs~DG~I~IWD 732 (732)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 112 3899999999976 666 8999999999999996
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-36 Score=356.83 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=244.2
Q ss_pred EEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCC-----CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737 441 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 514 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 514 (732)
.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3456789999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEEEEeCCC-
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 589 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v~~sp~g- 589 (732)
+|+|||+.++. ....+.+|...|.+++|+|++. +|++|+.|+.|++||+.......... +...+.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999865 5778899999999999999975 45599999999999987554333322 33459999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737 590 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 667 (732)
Q Consensus 590 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~ 667 (732)
..+++++.|+.|++||+++.++...+.+|...|++++|+|++++|++++ |+.|++||++++ .++..+.. ...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 56665543 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-------------------CCCeeEEEEeCCCCEEEEEECCCe
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKC 727 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-------------------~~~V~sla~spdg~~LaSgs~DG~ 727 (732)
+++|+|++.+++++ .++.|+|||+.++..+ .+..+ ...+++++|+|++++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999866555 5667999999998876 23211 123789999999999999999999
Q ss_pred EEEeC
Q 004737 728 VKIWK 732 (732)
Q Consensus 728 I~IWD 732 (732)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-36 Score=312.76 Aligned_cols=279 Identities=15% Similarity=0.237 Sum_probs=248.6
Q ss_pred eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
+..+..+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4567889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeC-CCCEEEEE
Q 004737 520 DTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILAA 595 (732)
Q Consensus 520 Dl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp-~g~~ll~~ 595 (732)
++.... .....+.+|...|.++.|. ..++++++.|+.|++|| .++....+. +...+.+++|.+ ++..++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 987653 3466788999999999994 35777999999999999 566666665 456789999988 88999999
Q ss_pred EcCCeEEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737 596 AIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 673 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp 673 (732)
+.|+.|++|| ..+....+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+|
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLLP 235 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECT
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEec
Confidence 9999999999 4566677776 899999999999998 66666 999999999987 77888888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 99 5999999999999999999887 6778999999999999998 66799999999996
No 30
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.6e-36 Score=320.10 Aligned_cols=265 Identities=18% Similarity=0.289 Sum_probs=234.7
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg 504 (732)
.|..+++|+..++. .+..+..|...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++
T Consensus 33 ~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 109 (304)
T 2ynn_A 33 YSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK 109 (304)
T ss_dssp TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence 36678888888775 456788999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 582 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~ 582 (732)
.+|++|+.|++|++||++++......+.+|...|.+++|+|.+..+|++|+.|+.|++||++.......+.. ...+..
T Consensus 110 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~ 189 (304)
T 2ynn_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (304)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEE
T ss_pred CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEE
Confidence 999999999999999999876667788999999999999997678888999999999999988776665542 356888
Q ss_pred EEEeC--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737 583 MRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 583 v~~sp--~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
+.|.| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||+.+. +++..+
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~ 266 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTL 266 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeec
Confidence 88886 677999999999999999999999999999999999999999999999999 999999999987 788888
Q ss_pred ecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 004737 660 SCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~ 695 (732)
..+...+.+++|+|++. .+++++.++.+.+|++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred cCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 88889999999999885 3345555666888887653
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=329.90 Aligned_cols=245 Identities=17% Similarity=0.273 Sum_probs=212.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE----EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~----~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
..|...|++++|+||+ .|++|+.||+|+|||+++++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3466789999999985 78899999999999999886543 345899999999999999999999999999999999
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCC-CEEEEEEcC
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIE 598 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g-~~ll~~s~d 598 (732)
++. .+..+.+|...|.+++|++++..+|++++.|+.|++||++++++...+.. ...+.+++|+|++ .++++++.|
T Consensus 158 ~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 158 QQV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 865 58889999999999999999988999999999999999999988877653 2358899999964 567788999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~ 676 (732)
+.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ ++ ..+.+|...|++++|+|++.
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~~-~~~~~H~~~V~~v~~sp~~~ 312 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---EL-FRSQAHRDFVRDATWSPLNH 312 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---EE-EEECCCSSCEEEEEECSSST
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---cE-EEEcCCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999998 5788888 999999999876 33 45678999999999999986
Q ss_pred E-EEEEEcCCeEEEEECCCCeE
Q 004737 677 S-LLVIGCYETLELWNMTENKT 697 (732)
Q Consensus 677 ~-L~sgs~dg~I~IwDl~t~~~ 697 (732)
. |++++.|+.|++|++.+...
T Consensus 313 ~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 313 SLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TEEEEEETTSCEEEEECCC---
T ss_pred eEEEEEcCCCeEEEEECCCCCC
Confidence 5 56889999999999987543
No 32
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.7e-37 Score=328.46 Aligned_cols=285 Identities=15% Similarity=0.275 Sum_probs=245.6
Q ss_pred EecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeEEEEecc-----CCCceEEEEEcCC----CCeEEEEe
Q 004737 445 LIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATSS 511 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-----h~~~V~~l~fspd----g~~Lasgs 511 (732)
...+|.+.|++++|+|+ ..++++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 45589999999999984 44666666677999999998877666643 6678999999998 67999999
Q ss_pred CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE----eccCCeeEEEEeC
Q 004737 512 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQP 587 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~----~~~~~i~~v~~sp 587 (732)
.||.|++||+.+++ .+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...+.+++|+|
T Consensus 93 ~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 93 SRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 99999999999876 477888999999999999944677889999999999999999998887 3567799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEE----------------------------EcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737 588 RLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 588 ~g~~ll~~s~dg~I~IwDl~t~~~i~~----------------------------l~~h~~~V~sla~spdg~~Lasgs- 638 (732)
++..+++++.|+.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 999999999999999999997654332 23389999999998 77899988
Q ss_pred CCeEEEEECCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCeE-----EEE
Q 004737 639 DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LTL 700 (732)
Q Consensus 639 Dg~I~IWDl~t~~~-----------~~~i~~~~~~~~~I~sl~fspd--g~~L~sgs~dg~I~IwDl~t~~~-----~~~ 700 (732)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..+
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 329 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL 329 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence 99999999987532 1347778888999999999999 99999999999999999998742 256
Q ss_pred ccC--CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 701 SAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 701 ~~h--~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..| ...|++++|+|++++|++++.||.|+|||
T Consensus 330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 666 79999999999999999999999999997
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.7e-36 Score=326.64 Aligned_cols=284 Identities=16% Similarity=0.220 Sum_probs=237.0
Q ss_pred EEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCeEEEEec--cCCCceEEEEEcC-CCCeEEEEeCCCeE
Q 004737 441 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRTV 516 (732)
Q Consensus 441 ~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~I 516 (732)
..+..+.+|.+.|++++|+|++ ++|++|+.|+.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 4566789999999999999999 999999999999999999888777765 6999999999999 78999999999999
Q ss_pred EEEecCCCCceeEEeec---CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC-E
Q 004737 517 RVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-R 591 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~---h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~ 591 (732)
++||+... ....+.. |...|.+++|+|++ .+|++++.|+.|++||++ ++.+..+. +...+.+++|+|++. .
T Consensus 144 ~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 144 TLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EEEETTSC--EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EEEECCCC--ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCE
Confidence 99999963 3455544 44889999999996 466799999999999995 66666665 456799999999998 8
Q ss_pred EEEEEcCCeEEEEECCC----CeEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEee----c
Q 004737 592 ILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS----C 661 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t----~~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~----~ 661 (732)
+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||+++......+.... .
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 99999999999999998 6677666 5999999999999 999999999 9999999999875433332111 1
Q ss_pred CC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc--CCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 662 TG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 662 ~~----------~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~--h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
+. ..+..++|+|++.+ +++.|+.|++||+.+++.+ .+.. |...+.+++|+|++++|++++ ||.|
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i 375 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNI 375 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcE
Confidence 11 33445666666665 6678999999999999887 5554 567888889999999999997 9999
Q ss_pred EEeC
Q 004737 729 KIWK 732 (732)
Q Consensus 729 ~IWD 732 (732)
+|||
T Consensus 376 ~iw~ 379 (383)
T 3ei3_B 376 LIWN 379 (383)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-36 Score=327.33 Aligned_cols=295 Identities=16% Similarity=0.236 Sum_probs=248.4
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEc----CCCe------EEEEecc-----
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----- 490 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~----~t~~------~~~~l~~----- 490 (732)
.+..+|++.... .......|.+.|++++|+|+++ +||+|+.|+.|+|||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 25 SIDSSDDLDGFV---KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp ---------CCC---EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred cccccccchhhh---hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 344556654432 2233456779999999999999 9999999999999999 8887 4555544
Q ss_pred -----CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 004737 491 -----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565 (732)
Q Consensus 491 -----h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl 565 (732)
|...|++++|+|++++|++++.||.|++||.. + ..+..+.+|...|.+++|+|++. +|++++.|+.|++||+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G-ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNV 178 (425)
T ss_dssp ------CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S-CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEET
T ss_pred ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C-CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEEC
Confidence 68899999999999999999999999999943 3 35778889999999999999965 5568888999999999
Q ss_pred CCCeeeeEEeccCC----------------eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 566 NNGSCAGVFKCQSG----------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 566 ~t~~~i~~~~~~~~----------------i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
.+++.+..+..+.. +.+++|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 257 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND 257 (425)
T ss_dssp TTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence 99998887775433 888999987 6799999999999999999998888999999999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCe
Q 004737 630 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 707 (732)
Q Consensus 630 dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V 707 (732)
++.+|++++ |+.|++||+++. ..+..+..|...|.+++|+|++ ++++++.|+.|++||+.+++.+ .+..|...|
T Consensus 258 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 258 TNKLLLSASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp TTTEEEEEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred CCCEEEEEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence 999999999 999999999887 5667777889999999999999 9999999999999999999887 667899999
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 708 SSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 708 ~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+++|+|++++|++++.||.|+|||
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEE
Confidence 9999999999999999999999996
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=320.08 Aligned_cols=287 Identities=16% Similarity=0.204 Sum_probs=241.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEEC---CCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcCC---CCeEEEEeCCCe
Q 004737 444 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 515 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~L-asgs~---Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fspd---g~~Lasgs~Dg~ 515 (732)
..+.+|.+.|++++|+|++..+ ++|+. |+.|+|||+.+++..... .+|...|++++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4467899999999999999755 55555 899999999998776443 379999999999998 699999999999
Q ss_pred EEEEecCCCCceeEEeecCCcceEEEEE------cCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecc-----CCeeEE
Q 004737 516 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ-----SGATQM 583 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l~~h~~~V~sl~f------spdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~-----~~i~~v 583 (732)
|++||+.++...+..+.+|...|.+++| +|++ .+|++++.|+.|++||+++++ .+..+..+ ..+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877567889999999999966 4565 567799999999999999887 56666532 257788
Q ss_pred E----EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC---CCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737 584 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 655 (732)
Q Consensus 584 ~----~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp---dg~~Lasgs-Dg~I~IWDl~t~~~~~~ 655 (732)
+ |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||+++......
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 7 678999999999999999999999987555 45889999999999 899999999 99999999987643222
Q ss_pred E--EEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC-------------------eEE-EEccCCCCeeEEEE
Q 004737 656 I--HELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN-------------------KTL-TLSAHDKLVSSLAA 712 (732)
Q Consensus 656 i--~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~-------------------~~~-~~~~h~~~V~sla~ 712 (732)
+ ..+..|...|.+++|+|++. +|++++.|+.|++||+..+ +.+ .+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 2 24457899999999999998 8999999999999999753 223 67789999999999
Q ss_pred eCCCCEEE-EEECCCeEEEeC
Q 004737 713 STVNGMVA-SASHDKCVKIWK 732 (732)
Q Consensus 713 spdg~~La-Sgs~DG~I~IWD 732 (732)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
No 36
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=336.88 Aligned_cols=284 Identities=14% Similarity=0.241 Sum_probs=236.7
Q ss_pred EEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCC---Ce---EEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737 442 EFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSAD 513 (732)
Q Consensus 442 ~v~~l-~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t---~~---~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 513 (732)
.+..+ .+|.+.|++++|+| ++++||+|+.|++|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 45667 89999999999999 999999999999999999876 33 23333 599999999999999999999999
Q ss_pred CeEEEEecC---CCCceeEEeec------------CCcceEEEE--EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737 514 RTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 576 (732)
Q Consensus 514 g~I~IWDl~---s~~~~~~~l~~------------h~~~V~sl~--fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~ 576 (732)
|+|++||++ ++. ....+.+ +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 133 g~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 133 GQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 999999995 333 2332222 445566666 44554 6777999999999999999999988874
Q ss_pred ---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeC----CCCEEEEEe-CCeEEEEEC
Q 004737 577 ---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWSI 647 (732)
Q Consensus 577 ---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~sp----dg~~Lasgs-Dg~I~IWDl 647 (732)
...+.+++|+|++.++++++.||.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 5789999999999999999999999999999999999886 6888999997665 577999998 999999999
Q ss_pred CCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE
Q 004737 648 GSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL 700 (732)
Q Consensus 648 ~t~~~~~~i~~~~~--------------------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~ 700 (732)
+++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 887 55555443 44568889999 7789999999999999999887644 22
Q ss_pred cc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCeEEEeC
Q 004737 701 SA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 732 (732)
Q Consensus 701 ~~-------------------------------------h~~~V~sla~spd--g~~LaSgs~DG~I~IWD 732 (732)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22 8999999999998 77999999999999996
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.8e-36 Score=328.42 Aligned_cols=298 Identities=15% Similarity=0.209 Sum_probs=249.1
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..++.. ...+..| ..+.+..|++++++|++|+.|+.|+|||+.+++....+.+|...|++++|+|+++
T Consensus 77 d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 152 (420)
T 3vl1_A 77 DGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE 152 (420)
T ss_dssp TTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS
T ss_pred CCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC
Confidence 45667777665532 2334455 4455568899999999999999999999999999998899999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--------
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------- 577 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-------- 577 (732)
+|++++.|+.|++||+.++. .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++++..+..+
T Consensus 153 ~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 153 ALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp EEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred EEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 99999999999999999876 467888999999999999996 45669999999999999999998888632
Q ss_pred -----------------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCC-EEEEEe
Q 004737 578 -----------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS 638 (732)
Q Consensus 578 -----------------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~-~Lasgs 638 (732)
..+.+++|+|++.++++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 234445567888999999999999999999998777765 4788999999999998 999988
Q ss_pred -CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----------eEEEEccCCCC
Q 004737 639 -DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN----------KTLTLSAHDKL 706 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~----------~~~~~~~h~~~ 706 (732)
||.|++||++++. ..+..+.. +...+.++.+ +++.+|++++.|+.|++||+... ....+..|...
T Consensus 311 ~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 311 ENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp TTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred CCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 9999999999864 23455555 5667777755 57789999999999999998762 23356688999
Q ss_pred eeEEEEeCCCC---EEEEEECCCeEEEeC
Q 004737 707 VSSLAASTVNG---MVASASHDKCVKIWK 732 (732)
Q Consensus 707 V~sla~spdg~---~LaSgs~DG~I~IWD 732 (732)
|.+++|+|++. .|++++.+|.+.+|+
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 99999999999 788888999999995
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-35 Score=313.29 Aligned_cols=266 Identities=17% Similarity=0.273 Sum_probs=232.2
Q ss_pred CCCceeeeeecCCC--ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 424 PRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 424 ~~d~~~r~wd~~~g--~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
+.|..+++|+.... .....+..+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+
T Consensus 37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~ 116 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116 (319)
T ss_dssp ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence 34667777776532 2234577899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC-----CcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINNGSCAGVFK- 575 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg-----~~llaSgs~Dg~I~iWDl~t~~~i~~~~- 575 (732)
|++.+|++|+.|++|++||++. ..+..+.+|...|.++.|.|.. ..++++++.|+.|++||+++.++...+.
T Consensus 117 ~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 117 KKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp TTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence 9999999999999999999974 3577888999999999999863 3478899999999999999998887776
Q ss_pred ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCcee
Q 004737 576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 655 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~ 655 (732)
+...+.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|+++.++.+++|++... ..
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~~ 270 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---YL 270 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTE---EE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---ee
Confidence 456799999999999999999999999999999999988875 46899999999999999999888999999875 44
Q ss_pred EEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 656 IHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 656 i~~~~--------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 44433 23567899999999999999999999999998654
No 39
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-35 Score=315.53 Aligned_cols=258 Identities=23% Similarity=0.347 Sum_probs=230.2
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEeccCCCceEEEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~V~~l~f 500 (732)
.|..+++|+..++. .+..+..|...|.+++|+|++++|++|+.|+.|+|||+.+. .....+.+|.+.|.++.|
T Consensus 75 ~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 75 QDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp TTTEEEEEETTTCC---EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred CCCcEEEEECCCCC---cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence 35677888877765 35667899999999999999999999999999999999865 456778899999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCC
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 579 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~ 579 (732)
++++. |++++.|++|++||+.++. .+..+.+|...|.+++|+|++ .++++|+.|+.|++||++++.++..+.. ...
T Consensus 152 ~~~~~-l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~ 228 (340)
T 1got_B 152 LDDNQ-IVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESD 228 (340)
T ss_dssp EETTE-EEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred CCCCc-EEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC
Confidence 98764 8999999999999999866 577889999999999999986 5777999999999999999999888874 456
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 656 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i 656 (732)
|.+++|+|++..|++++.|+.|++||+++++.+..+.. +...|.+++|+|++.+|++++ |+.|++||+.+. ..+
T Consensus 229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~ 305 (340)
T 1got_B 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRA 305 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEe
Confidence 99999999999999999999999999999988777653 335799999999999999999 999999999887 677
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 657 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 657 ~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88889999999999999999999999999999996
No 40
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-37 Score=333.26 Aligned_cols=285 Identities=15% Similarity=0.189 Sum_probs=229.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
.+..|.+.|+|++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|++++|+|++++|++++.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 7788889999999999999999999999999999999999
Q ss_pred CCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEe--ccCCeeEEEEeCCCCEEEEE
Q 004737 523 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 595 (732)
Q Consensus 523 s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---~i~~~~--~~~~i~~v~~sp~g~~ll~~ 595 (732)
++. .....+.+|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...+.+++|+|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 865 23566788999999999999865 55588899999999999877 355555 46679999999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc-ee
Q 004737 596 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 655 (732)
Q Consensus 596 s~dg~I~IwDl~------------------t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~-~~ 655 (732)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999999 999999999987431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------------------------------------
Q 004737 656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 696 (732)
Q Consensus 656 i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------------------------------------- 696 (732)
+..+..|...|.+++|+|++.+|++++.++. .+|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSP-ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSE-EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcE-EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 6677889999999999999998877765554 477664211
Q ss_pred EE-E-------------EccCCCCeeEEEEeCCC-C---EEEEEECCCeEEEeC
Q 004737 697 TL-T-------------LSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 732 (732)
Q Consensus 697 ~~-~-------------~~~h~~~V~sla~spdg-~---~LaSgs~DG~I~IWD 732 (732)
.+ . ...|.+.|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 0 01299999999976544 3 699999999999997
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=331.29 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=244.2
Q ss_pred CeEEEEEcCCCC-EEEEE----------ECCCcEEEEEcCCCe---EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEE
Q 004737 452 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517 (732)
Q Consensus 452 ~V~~lafSpdg~-~Lasg----------s~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~ 517 (732)
.|.+++|+|+++ +|++| +.|+.|+|||+.+++ .+..+ .|...|++++|+|++.+|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 588999999997 99999 899999999999875 33333 5889999999999999999999999999
Q ss_pred EEecCC---CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeEE----eccCCeeEEE
Q 004737 518 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQMR 584 (732)
Q Consensus 518 IWDl~s---~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~------~i~~~----~~~~~i~~v~ 584 (732)
+||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 2336778889999999999999966788899999999999999876 33322 3456799999
Q ss_pred EeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEeCCC-CEEEEEe-CC---eEEEEECCCCCC
Q 004737 585 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK 652 (732)
Q Consensus 585 ~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h------~~~V~sla~spdg-~~Lasgs-Dg---~I~IWDl~t~~~ 652 (732)
|+|+ +..+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++ |+ .|++||+++..
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~- 251 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN- 251 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence 9999 688999999999999999999999888876 7899999999997 6888888 77 99999998853
Q ss_pred ceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeE
Q 004737 653 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV 728 (732)
Q Consensus 653 ~~~i~~~~-~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg-~~LaSgs~DG~I 728 (732)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|
T Consensus 252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 3445566 7889999999999 8999999999999999999999887 777999999999999999 899999999999
Q ss_pred EEeC
Q 004737 729 KIWK 732 (732)
Q Consensus 729 ~IWD 732 (732)
+|||
T Consensus 331 ~iw~ 334 (416)
T 2pm9_A 331 EVQT 334 (416)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=310.50 Aligned_cols=273 Identities=21% Similarity=0.334 Sum_probs=225.2
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEeccCCCceEEEEEcC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~~l~fsp 502 (732)
.|..+++|+...+..........+|.+.|++++|+|++++||+|+.|++|+|||+... +.+..+.+|...|.+++|+|
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 3566788887776543344455799999999999999999999999999999999876 45788899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEe-cc
Q 004737 503 SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK-CQ 577 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i--~~~~-~~ 577 (732)
++++|++|+.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++.|+.|++||++.++.. ..+. +.
T Consensus 116 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~ 194 (345)
T 3fm0_A 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHE 194 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCC
Confidence 999999999999999999987542 3567789999999999999975 5669999999999999887543 4444 44
Q ss_pred CCeeEEEEeCCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CC
Q 004737 578 SGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE 640 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t---------------~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg 640 (732)
..|.+++|+|++.+|++++.|+.|++||... .+++..+.+ |...|.+++|++++.+|++++ |+
T Consensus 195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 6799999999999999999999999999632 134555655 888999999999999999998 99
Q ss_pred eEEEEECCCCCCc------eeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 004737 641 LVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 641 ~I~IWDl~t~~~~------~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.|++|+....... ...+....|...|.+++|+|++ .+|++++.|+.|++|++.+++..
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 9999998764321 1122345788999999999998 48999999999999999887755
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-35 Score=323.56 Aligned_cols=265 Identities=14% Similarity=0.220 Sum_probs=218.5
Q ss_pred CCceeeeeecCCCceeEE-EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE----EEeccCCCceEEEE
Q 004737 425 RDRVGRSAEVGKGFTFTE-FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVR 499 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~-v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~ 499 (732)
+|..+++|+..++..... .....+|...|++++|+|+++ +++++.||+|+|||+.+++.. ....+|...|++++
T Consensus 68 wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 366778888777654332 234567999999999999985 556788999999999887654 33458999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---c
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C 576 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~ 576 (732)
|+|++++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++++..++++++.|+.|++||++++++...+. .
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 225 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS 225 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence 99999999999999999999999865 5788899999999999999988888899999999999999988776654 2
Q ss_pred cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCc
Q 004737 577 QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 577 ~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
...+.+++|+|++ ..|++++.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++ |++|+|||++++
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--- 302 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--- 302 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---
Confidence 3458999999975 567788999999999999999999999999999999999987 5788888 999999999886
Q ss_pred eeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCC
Q 004737 654 ECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+++.. ..|...|++++|+| ++.+|++++.|+.|++|++.+.
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 55544 46899999999998 7899999999999999999654
No 44
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-34 Score=312.72 Aligned_cols=266 Identities=15% Similarity=0.210 Sum_probs=220.8
Q ss_pred CCceeeeeecCCCc----eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 425 RDRVGRSAEVGKGF----TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 425 ~d~~~r~wd~~~g~----~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
.|..+++|+...+. .......+.+|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|
T Consensus 47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~ 126 (343)
T 2xzm_R 47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126 (343)
T ss_dssp TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEE
T ss_pred CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence 35566777765432 23456778999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCCCC---------cEEEEEeCCCcEEEEECCCC
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspdg~---------~llaSgs~Dg~I~iWDl~t~ 568 (732)
+|++++|++++.|++|++||+.... .... .+|...|.+++|+|++. .++++++.|+.|++||.. .
T Consensus 127 sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~ 203 (343)
T 2xzm_R 127 SPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F 203 (343)
T ss_dssp CSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T
T ss_pred CCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C
Confidence 9999999999999999999998422 2222 37889999999999863 578899999999999954 5
Q ss_pred eeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Q 004737 569 SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWS 646 (732)
Q Consensus 569 ~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWD 646 (732)
.....+. +...+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.+++|+|++.+++++.|+.|++||
T Consensus 204 ~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~ 282 (343)
T 2xzm_R 204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFN 282 (343)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence 5555555 456799999999999999999999999999954 33334443 55679999999999999888899999999
Q ss_pred CCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 647 IGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 647 l~t~~~~~~i~~~~-----------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+.+..... +..+. .|...|.+++|+|++.+|++++.|+.|++|+++++
T Consensus 283 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 283 LMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 98764322 22222 56778999999999999999999999999998654
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.3e-35 Score=308.39 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=243.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc--
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 526 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-- 526 (732)
|.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888888877665555555558999999999999999999998 99999999987542
Q ss_pred eeEEee--cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 527 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 527 ~~~~l~--~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
.+..+. +|...|.+++|+|++ .++++++.|+.|++||+.+++ ....+. +...+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 223333 789999999999986 566688889999999999877 444444 34568999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.++++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999 999999999887 5555543 6778999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 681 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 681 gs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999888899999999999999999999999999999996
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=342.86 Aligned_cols=306 Identities=8% Similarity=0.047 Sum_probs=237.4
Q ss_pred CCCCCceeeeeecCCCce-eEEEEEecCCCCCeEEEEEcCC------CCEEEEEECCCcEEEEEcCCCeE----------
Q 004737 422 ADPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAVLWCTESFTV---------- 484 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~-~~~v~~l~~H~~~V~~lafSpd------g~~Lasgs~Dg~I~VWd~~t~~~---------- 484 (732)
..+.|..+++|++..+.. ......+.+|.+.|.+|+|+|+ +.+||+++.||+|+|||+.+++.
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 356788999999877643 2233457789999999999997 57999999999999999986632
Q ss_pred -EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE--EEcCCCCcEEEEEeCCCcEE
Q 004737 485 -KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 485 -~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl--~fspdg~~llaSgs~Dg~I~ 561 (732)
...+.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.+| .|+|++..+|++|+.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467889999999999986 4899999999999999997765667789999999999 46676557888999999999
Q ss_pred EEECCCCeeeeEEeccC---CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737 562 YWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 562 iWDl~t~~~i~~~~~~~---~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs 638 (732)
+||+++++++..+..+. .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|++.+|++|+
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence 99999888776665432 478999999999999999999999999999988888889999999999999999999999
Q ss_pred -CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCeEEEEccCCCCeeEEEEe
Q 004737 639 -DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSLAAS 713 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl--~t~~~~~~~~h~~~V~sla~s 713 (732)
|++|++||+..... ...... ......+.+++|+|++..+ ... +.+++|+. .......+.+|...|.+++|+
T Consensus 417 ~Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs 492 (524)
T 2j04_B 417 ADGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKY-RID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWN 492 (524)
T ss_dssp TTTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEE-EEC--CCCCCCC-------------CCCSCCCEEEC
T ss_pred CCCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeE-Ecc--CCceecccccCCcceeeecCCCceEEEEECC
Confidence 99999999865311 110000 0122357899999999844 222 22334433 233344788999999999999
Q ss_pred CCCC---EEEEEECCCeEEEeC
Q 004737 714 TVNG---MVASASHDKCVKIWK 732 (732)
Q Consensus 714 pdg~---~LaSgs~DG~I~IWD 732 (732)
|++. +|++|+.||.|+||+
T Consensus 493 p~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 493 ETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp CSTTTTTEEEEECTTSEEEEEE
T ss_pred CCCCccHHHHhhccCceEEEEE
Confidence 9964 999999999999995
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-34 Score=320.34 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=246.5
Q ss_pred EEEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737 441 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519 (732)
Q Consensus 441 ~~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW 519 (732)
.....+.+|.+.| +|+.| ++++|++|+.||+|+|||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3556788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCeeee-----------------------EEe
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 575 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWDl~t~~~i~-----------------------~~~ 575 (732)
|++++. .+..+.+|...|.+++|++. +..++++++.|+.|++||+.++.... .+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999876 57888999999999999962 34778899999999999998765432 222
Q ss_pred -ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737 576 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 576 -~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
+...+.+ +++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 1223444 467789999999999999999999999999999999999999999999999999 999999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.++..+..|...|.++.|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999997 5789999999999999999988776667888899999999999999998 89999996
No 48
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-34 Score=311.52 Aligned_cols=260 Identities=21% Similarity=0.334 Sum_probs=230.3
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC------eEEEEeccCCCceEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDV 498 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~l 498 (732)
.|..+++|+..++.. ...+..|...|.+++|+|+|.+|++|+.|+.|++|++... .....+..|...|.++
T Consensus 84 ~Dg~v~vWd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 160 (354)
T 2pbi_B 84 QDGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC 160 (354)
T ss_dssp TTSEEEEEETTTCCE---EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEE
T ss_pred CCCeEEEEECCCCCc---ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEE
Confidence 356777888766643 4557789999999999999999999999999999998643 3456677899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEec-
Q 004737 499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC- 576 (732)
Q Consensus 499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~- 576 (732)
+|+|++..|++++.|++|++||++++. .+..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+..
T Consensus 161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h 239 (354)
T 2pbi_B 161 SFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239 (354)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 999999999999999999999999876 578899999999999999863 36888999999999999999999888874
Q ss_pred cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737 577 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
...|.+++|+|++..|++++.|+.|++||++..+.+..+..+ ...+.+++|+|++.+|++++ |+.|++||+.++
T Consensus 240 ~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--- 316 (354)
T 2pbi_B 240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG--- 316 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---
T ss_pred CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---
Confidence 466999999999999999999999999999998877766543 35789999999999999999 999999999887
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 691 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD 691 (732)
..+..+..|...|.+++|+|++.+|++++.|+.|+||+
T Consensus 317 ~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 67788889999999999999999999999999999996
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=309.61 Aligned_cols=287 Identities=17% Similarity=0.265 Sum_probs=243.6
Q ss_pred eEEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEEcCC-CeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737 440 FTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADR 514 (732)
Q Consensus 440 ~~~v~~l~~H~~~V~~lafSpd---g~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg 514 (732)
+..+..+.+|.+.|+|++|+|+ |++|++|+.|+.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.||
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3456778999999999999999 69999999999999999997 5554 77889999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~f--spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l 592 (732)
.|++||+.++. ...+..|...|.+++| ++++ .+|++++.|+.|++||+++++++..+..+..+.++.+.+ ..+
T Consensus 109 ~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~ 183 (368)
T 3mmy_A 109 TAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMA 183 (368)
T ss_dssp EEEEEETTTTE--EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEE
T ss_pred cEEEEEcCCCC--ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Cee
Confidence 99999999865 3446779999999999 7775 567799999999999999999999999888777777765 588
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCE----EEEEe-CCeEEEEECCCCCCceeEEEeecCCC-
Q 004737 593 LAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN- 664 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~----Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~- 664 (732)
++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 999999999999999875443322 24556777777666554 77777 99999999988754345556666654
Q ss_pred -----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 665 -----------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 665 -----------~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++.+|++++.|+..+.|
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 677899999999999999999999998865444
No 50
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.8e-35 Score=311.77 Aligned_cols=277 Identities=14% Similarity=0.145 Sum_probs=241.4
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEE
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 518 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~I 518 (732)
+....+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|++++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 44566899999999999999999999999999999998876 3455568999999999999999 9999999999999
Q ss_pred Eec-CCCCceeEEeec--CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEEeccCCeeEEEEe
Q 004737 519 WDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQ 586 (732)
Q Consensus 519 WDl-~s~~~~~~~l~~--h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---------~~~i~~~~~~~~i~~v~~s 586 (732)
||+ .++. ...+.+ |...|.+++|+| + .++++++.|+.|++||+++ ++++..+.+...+.+++|+
T Consensus 84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 7754 477788 999999999999 4 6677999999999999987 7777777777889999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCC---CceeEEE
Q 004737 587 PRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIHE 658 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t-~~--~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~---~~~~i~~ 658 (732)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|++.... .......
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 886 99999999999999998 43 3444556888999999999 999999999 9999999998751 0134455
Q ss_pred eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEECCCe
Q 004737 659 LSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKC 727 (732)
Q Consensus 659 ~~~~~~---------~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs~DG~ 727 (732)
+..|.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|.+++ |++.+|++++.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 555544 9999999999999999999999999999999887 66777 99999999 99999999999998
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-34 Score=304.32 Aligned_cols=251 Identities=19% Similarity=0.289 Sum_probs=212.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEEE
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 519 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~IW 519 (732)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 4677899999999999999864 8999999999999999
Q ss_pred ecCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCee--eeEEe-ccCCeeEEEEeCC------
Q 004737 520 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPR------ 588 (732)
Q Consensus 520 Dl~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~--i~~~~-~~~~i~~v~~sp~------ 588 (732)
|++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+. +...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 2356678899999999999972 36777999999999999987632 22333 4567999999997
Q ss_pred -------CCEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCc
Q 004737 589 -------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKG 653 (732)
Q Consensus 589 -------g~~ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~ 653 (732)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||++.....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4689999999999999998764 667888999999999999985 7899999 999999999875321
Q ss_pred eeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 654 ECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 654 ~~i~~~--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
.....+ ..+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 222233 45678899999999999999999999999999763
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5e-34 Score=313.83 Aligned_cols=262 Identities=22% Similarity=0.366 Sum_probs=224.4
Q ss_pred CceeeeeecCCCceeEEEEEecCC------------------CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPAS------------------TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 487 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H------------------~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~ 487 (732)
+..+++|++.++.... .+..| ...|++++|+|||++||+|+.|+.|+|||+.+++.+..
T Consensus 84 ~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~ 160 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 160 (393)
T ss_dssp BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 3456777777765433 23333 33599999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 488 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 488 l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
+.+|...|++++|+|++.+|++++.|++|++||+.++.. ...+. +...+.+++|+|.+..++++++.|+.|++||+++
T Consensus 161 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 999999999999999999999999999999999998653 44444 6678999999995567888999999999999999
Q ss_pred CeeeeEEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eEEEEEcCCCCCEEEEEE
Q 004737 568 GSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKNQVHSVCW 627 (732)
Q Consensus 568 ~~~i~~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~------------~~i~~l~~h~~~V~sla~ 627 (732)
++++..+. +...|.+++|+|++.+|++++.|+.|++||+++. .+...+.+|...|.+++|
T Consensus 239 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 318 (393)
T 1erj_A 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318 (393)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence 98877662 3456999999999999999999999999999753 456678889999999999
Q ss_pred eCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEEEEECCCC
Q 004737 628 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 628 spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp------dg~~L~sgs~dg~I~IwDl~t~ 695 (732)
++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|+.|+||++...
T Consensus 319 ~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 319 TQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999999999 999999999987 67888889999999999986 6789999999999999997643
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.1e-35 Score=318.63 Aligned_cols=279 Identities=13% Similarity=0.103 Sum_probs=227.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------cEEEEEcCCCeE----------EEEeccCCCceEEEEEcCCCCeEEEEe--
Q 004737 451 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS-- 511 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg-------~I~VWd~~t~~~----------~~~l~~h~~~V~~l~fspdg~~Lasgs-- 511 (732)
-+|+||+|+||+++||+|+.|. .|+||++..... ...+..|...|.+++|+ ++.+++|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999998643 599999875421 23467888899998875 45666654
Q ss_pred ---------CCCeEEEEecCCCCceeEEe--------ecCCcceEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCeeeeE
Q 004737 512 ---------ADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 573 (732)
Q Consensus 512 ---------~Dg~I~IWDl~s~~~~~~~l--------~~h~~~V~sl~fspdg~~ll-aSgs~Dg~I~iWDl~t~~~i~~ 573 (732)
.|+.|++|++......+... ..+...+.+++|+|||..++ ++++.|++|++||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 47889999987655433322 23445689999999998764 4566799999999999999999
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-CC----eEEEEE
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 646 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-Dg----~I~IWD 646 (732)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99888999999999999888876 55677777777765543 445888999999999999999988 65 688899
Q ss_pred CCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE-ccCCCCeeEEEEeCCCCEEEEEE
Q 004737 647 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-SAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 647 l~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~-~~h~~~V~sla~spdg~~LaSgs 723 (732)
+..... ......+..|...|++++|+|++++|++++.|+.|+|||+.+++++ .+ .+|...|++++|+||+++||+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999988 43 58999999999999999999999
Q ss_pred CCCeEEEeC
Q 004737 724 HDKCVKIWK 732 (732)
Q Consensus 724 ~DG~I~IWD 732 (732)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=315.32 Aligned_cols=301 Identities=19% Similarity=0.342 Sum_probs=244.6
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEe-------------ccCC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHT 492 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------------~~h~ 492 (732)
..+++|+...+. ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+ .+|.
T Consensus 23 ~~~~v~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNK---DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECT---TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCc---ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 345666665543 3456788999999999999 9999999999999999999987654333 2599
Q ss_pred CceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCe
Q 004737 493 QWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS 569 (732)
Q Consensus 493 ~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~--~llaSgs~Dg~I~iWDl~t~~ 569 (732)
..|.+++|+| ++.+|++++.||.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999999999 788999999999999999998653 44444 778899999998643 378899999999999999998
Q ss_pred eeeEEe-ccCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCe-EEEEE---------------cCCCCCEEEEEEeCCC
Q 004737 570 CAGVFK-CQSGATQMRFQPRLGR-ILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSG 631 (732)
Q Consensus 570 ~i~~~~-~~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~~-~i~~l---------------~~h~~~V~sla~spdg 631 (732)
.+..+. +...+.+++|+|++.+ +++++.||.|++||+++.. ++..+ ..|...|.+++|+|++
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 888887 4567999999999884 8899999999999998764 44444 4688899999999999
Q ss_pred CEEEEEe-CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCe
Q 004737 632 EYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 707 (732)
Q Consensus 632 ~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V 707 (732)
.+|++++ |+.|++||+.++......... ......+...........+++++.++.|++||+.+++.+ .+.+|...|
T Consensus 258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v 337 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV 337 (408)
T ss_dssp SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence 9999999 999999999987432211110 111122222233344566888889999999999999888 777899999
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 708 SSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 708 ~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++++|+|++.+|++++.||.|+|||
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEe
Confidence 9999999999999999999999996
No 55
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.1e-35 Score=307.43 Aligned_cols=286 Identities=18% Similarity=0.215 Sum_probs=218.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEE
Q 004737 444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 517 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~ 517 (732)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356899999999999999999999999999999999876 56777889999999999999 699999999999999
Q ss_pred EEecCCCC--------ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe-------------
Q 004737 518 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------------- 575 (732)
Q Consensus 518 IWDl~s~~--------~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~------------- 575 (732)
+||+.++. ..+..+.+|...|.+++|+|+. ..++++++.|+.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998764 3467788999999999999982 3566688999999999998877654332
Q ss_pred -ccCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCC----CEEEEEe-CCeEEE
Q 004737 576 -CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRV 644 (732)
Q Consensus 576 -~~~~i~~v~~sp~---g~~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg----~~Lasgs-Dg~I~I 644 (732)
+...+.+++|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++++ |+.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 3356899999997 89999999999998888887754 67788899999999999998 7899998 999999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEE
Q 004737 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG----CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs----~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~L 719 (732)
||++.... ..........+....+.+....+..+. ....+.+|+....+.+ .+.+|...|++++|+|++++|
T Consensus 245 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 245 FKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 99987632 222222223333334444443333333 2335556665555555 677899999999999999999
Q ss_pred EEEECCCeEEEeC
Q 004737 720 ASASHDKCVKIWK 732 (732)
Q Consensus 720 aSgs~DG~I~IWD 732 (732)
++++.||.|+|||
T Consensus 322 ~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 322 SSAGDDGKVRLWK 334 (351)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 9999999999996
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.9e-34 Score=325.79 Aligned_cols=294 Identities=16% Similarity=0.280 Sum_probs=244.1
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCC---ceEEEEEcC
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSP 502 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~l~fsp 502 (732)
..+.+|+ .+. .+..+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+.+|.. .|++++|+|
T Consensus 142 ~~v~~~d--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 142 GVFISWD--SGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp EEEEETT--TCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred cEEEEEE--CCC---cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC
Confidence 3555555 433 4667889999999999999998 899999999999999999999999999999 999999999
Q ss_pred C-CCeEEEEeCCCeEEEEecCCCCceeEEe-e---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737 503 S-LSRLATSSADRTVRVWDTENPDYSLRTF-T---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577 (732)
Q Consensus 503 d-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~ 577 (732)
+ +++|++++.|+.|++||+.+++. +..+ . .|...|.+++|+ ++ .++++++.|+.|++||+++++++..+..+
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9 99999999999999999998764 5666 5 899999999999 64 66778999999999999987766554432
Q ss_pred -----CCee-----------------------------------------------------------------------
Q 004737 578 -----SGAT----------------------------------------------------------------------- 581 (732)
Q Consensus 578 -----~~i~----------------------------------------------------------------------- 581 (732)
..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence 1111
Q ss_pred ---EEEEe----------------------------------CC------------------------------------
Q 004737 582 ---QMRFQ----------------------------------PR------------------------------------ 588 (732)
Q Consensus 582 ---~v~~s----------------------------------p~------------------------------------ 588 (732)
+++|. |+
T Consensus 374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 11110 00
Q ss_pred --CCEEEEEEc-CCeEEEEECCCCeEE-EEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-C
Q 004737 589 --LGRILAAAI-ENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-T 662 (732)
Q Consensus 589 --g~~ll~~s~-dg~I~IwDl~t~~~i-~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-~ 662 (732)
+..+++++. |+.|++||+.+++.. ..+..|...|.+++|+|++++|++++ |+.|++||+.++ +++..+.. |
T Consensus 454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h 530 (615)
T 1pgu_A 454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFR 530 (615)
T ss_dssp ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCC
T ss_pred EcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCC
Confidence 334444555 666666666655444 45567899999999999999999999 999999999887 77777777 8
Q ss_pred CCceEEEEEeC----------CCCEEEEEEcCCeEEEEECCCC-eEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 663 GNKFHSCVFHP----------TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 663 ~~~I~sl~fsp----------dg~~L~sgs~dg~I~IwDl~t~-~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
...|.+++|+| ++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 609 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence 99999999999 9999999999999999999987 444 6779999999999999999 999999999999
Q ss_pred eC
Q 004737 731 WK 732 (732)
Q Consensus 731 WD 732 (732)
||
T Consensus 610 w~ 611 (615)
T 1pgu_A 610 WN 611 (615)
T ss_dssp EE
T ss_pred Ee
Confidence 96
No 57
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-35 Score=329.51 Aligned_cols=280 Identities=19% Similarity=0.275 Sum_probs=223.3
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEe
Q 004737 445 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 520 (732)
Q Consensus 445 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWD 520 (732)
...+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4567899999999999 667999999999999999987654 344568999999999998 689999999999999999
Q ss_pred cCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC-EEEEE
Q 004737 521 TENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAA 595 (732)
Q Consensus 521 l~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~ll~~ 595 (732)
+++.. ...+. .+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+. +...|.+++|+|++. .++++
T Consensus 194 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 194 FKGNI--LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp TTSCE--EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred ccCCc--eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEe
Confidence 98643 33332 234567899999996 56779999999999999754 444444 456799999999876 56788
Q ss_pred EcCCeEEEEECCCCeEEE---EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC------c
Q 004737 596 AIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------K 665 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~---~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~------~ 665 (732)
+.|+.|++||+++.+... ...+|...|++++|+|++.+|++++ |+.|+|||+.++ .+...+..|.. .
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence 899999999998765432 3356899999999999999999999 999999999987 34444433321 2
Q ss_pred eEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEE-EE-ccCCCCeeEE-EEeCCCCEEEEEECCCeEEE
Q 004737 666 FHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs~------------dg~I~IwDl~t~~~~-~~-~~h~~~V~sl-a~spdg~~LaSgs~DG~I~I 730 (732)
+..+.|+|++..++++.. ++.|++||..+++.+ .+ ..|...|.++ +|+|++.+|++|+ |+.|+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 344567777776666642 247999999999888 33 4788889887 6999999999876 889999
Q ss_pred eC
Q 004737 731 WK 732 (732)
Q Consensus 731 WD 732 (732)
||
T Consensus 426 W~ 427 (435)
T 4e54_B 426 WS 427 (435)
T ss_dssp CC
T ss_pred EE
Confidence 97
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3e-33 Score=312.48 Aligned_cols=292 Identities=17% Similarity=0.246 Sum_probs=251.5
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc--C
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS--P 502 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs--p 502 (732)
.|..+++|+..++. .+..+.+|.+.|++++|++++ +|++|+.|++|+|||+++++.+..+.+|...|.+++|+ +
T Consensus 140 ~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 140 DDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp TTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS
T ss_pred CCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC
Confidence 35667888887774 466788999999999999988 99999999999999999999999999999999999998 5
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCce----------------------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~----------------------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
++.+|++++.|++|++||+.+.... ...+.+|...|.++... ..++++++.|+.|
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i 292 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTL 292 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE---TTEEEEEETTSCE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC---CCEEEEEeCCCeE
Confidence 7889999999999999999876432 45678899999888544 3577799999999
Q ss_pred EEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737 561 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs- 638 (732)
++||+++++++..+.. ...+.+++|+|++..+++++.|+.|++||+++++++..+.+|...|.+++|+ +.+|++++
T Consensus 293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~ 370 (464)
T 3v7d_B 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA 370 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET
T ss_pred EEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC
Confidence 9999999999988874 5679999999999999999999999999999999999999999999999997 57888888
Q ss_pred CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EccCCCCeeEEEEeCCC
Q 004737 639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVN 716 (732)
Q Consensus 639 Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~--~~~h~~~V~sla~spdg 716 (732)
|+.|++||+.+.. ..... .+...+..++|++++.++++++ |+.|++||+.+++.+. ...|...|.+++|+ ..
T Consensus 371 dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~ 444 (464)
T 3v7d_B 371 DGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK 444 (464)
T ss_dssp TSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TT
T ss_pred CCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CC
Confidence 9999999999863 33333 3566788899999999888888 8999999999999884 56889999999998 44
Q ss_pred CEEEEEECCCeEEEe
Q 004737 717 GMVASASHDKCVKIW 731 (732)
Q Consensus 717 ~~LaSgs~DG~I~IW 731 (732)
.++++++.||.+.+|
T Consensus 445 ~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 445 TLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEEEeCCeEEEE
Confidence 566666778866655
No 59
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-34 Score=312.20 Aligned_cols=280 Identities=18% Similarity=0.335 Sum_probs=240.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
...+|...+.+.++++++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++++|++|+.||.|++||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3456776654433333345688888999999999999998877765 889999999999999999999999999999998
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 601 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I 601 (732)
+. .+..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...+.+++|+|++..+++++.|+.|
T Consensus 166 ~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 166 QT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp CC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred Ce-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 76 5778889999999999953 578899999999999998 455555555 45679999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
++||+++++.+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...|.+++|+|++.+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSKE 317 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSSE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCCe
Confidence 999999999999999999999999999976 5666654 899999999987 5566654 5678999999999999
Q ss_pred EEEEE--cCCeEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 678 LLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 678 L~sgs--~dg~I~IwDl~t~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+++++ .|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99965 7999999999987655 4668999999999999999999999999999996
No 60
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=343.38 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=153.2
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+...+.. .....|...|++++|+| |++|++++.|++|+|||+.+++.+..+. |...|++++|+|+++
T Consensus 38 Dg~I~lw~~~~~~~----~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~ 111 (902)
T 2oaj_A 38 TGEVHIYGQQQVEV----VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLD 111 (902)
T ss_dssp TSEEEEECSTTCEE----EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCS
T ss_pred CCEEEEEeCCCcEE----EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC
Confidence 34566666554432 22235888999999999 8899999999999999999999988886 778999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCcee----------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737 506 RLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~----------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~ 575 (732)
+|++|+.||+|++||+++..... ..+.+|.+.|++++|+|++..++++|+.|+.| +||+++++++..+.
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~ 190 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI 190 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence 99999999999999999765321 23467899999999999866788899999999 99999999988876
Q ss_pred cc-------------------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737 576 CQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 613 (732)
Q Consensus 576 ~~-------------------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~ 613 (732)
.+ ..|.+++|+|++.+|++++.|+.|++||+++++++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 54 569999999999999999999999999998776543
No 61
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.2e-33 Score=299.20 Aligned_cols=260 Identities=25% Similarity=0.423 Sum_probs=229.8
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..++. ....+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|+++
T Consensus 44 dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
T 4ery_A 44 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120 (312)
T ss_dssp TSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 4566777776664 3456789999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQM 583 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~v 583 (732)
+|++++.|+.|++||++++. .+..+..|...|.+++|+|++ .++++++.|+.|++||+++++++..+.. ...+..+
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 198 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198 (312)
T ss_dssp EEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEE
Confidence 99999999999999999876 577888999999999999986 4666999999999999999988877643 3468899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE--EEE-eCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS--VCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~s--la~-spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
+|+|++.++++++.|+.|++||+++++++..+.+|...+.+ ..| .+++.+|++++ |+.|++||+.+. ..+..+
T Consensus 199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~ 275 (312)
T 4ery_A 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKL 275 (312)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhh
Confidence 99999999999999999999999999999999888765432 233 36788999988 999999999887 778889
Q ss_pred ecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 004737 660 SCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 693 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~ 693 (732)
..|...|.+++|+|++.++++++ .|+.|++|+..
T Consensus 276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999987 58899999864
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=305.82 Aligned_cols=267 Identities=23% Similarity=0.403 Sum_probs=209.9
Q ss_pred CCceeeeeecCCCceeEEEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-------CCeEEEEeccCCCce
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWI 495 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l-~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-------t~~~~~~l~~h~~~V 495 (732)
.|..+++|+...+. +..+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||++ ..+.+..+.+|...|
T Consensus 32 ~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V 110 (330)
T 2hes_X 32 TDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110 (330)
T ss_dssp SSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred CCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence 45667777776542 2233444 44 99999999999999999999999999999985 345677889999999
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ee
Q 004737 496 TDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SC 570 (732)
Q Consensus 496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~--~~ 570 (732)
++++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.++ ++
T Consensus 111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeE
Confidence 999999999999999999999999995332 3456788999999999999996 56779999999999999876 56
Q ss_pred eeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEcC-CCCCEEEEEEeCCCCEEEEEe
Q 004737 571 AGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG-HKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 571 i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~--------~~i~~l~~-h~~~V~sla~spdg~~Lasgs 638 (732)
+..+. +...|.+++|+|+ +..+++++.|+.|++||++.+ .+...+.. |...|.+++|++++ +|++++
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~ 268 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG 268 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe
Confidence 66665 4457999999998 678999999999999998754 44555555 89999999999766 667777
Q ss_pred -CCeEEEEECCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEECCC
Q 004737 639 -DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~-~I~sl~fsp--dg~~L~sgs~dg~I~IwDl~t 694 (732)
|+.|+|||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+++
T Consensus 269 ~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999876521112223356766 899999999 688999999999999999865
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=319.87 Aligned_cols=278 Identities=18% Similarity=0.343 Sum_probs=230.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----------EEEEeccCC------------CceEEEEEcCCC
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 504 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~------------~~V~~l~fspdg 504 (732)
.|.+.|+||+|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367889999999999999999999999999999876 577888998 889999999998
Q ss_pred --CeEEEEeCCCeEEEEecCCCCce--------------------------------------eEE-eecCCcceEEEEE
Q 004737 505 --SRLATSSADRTVRVWDTENPDYS--------------------------------------LRT-FTGHSTTVMSLDF 543 (732)
Q Consensus 505 --~~Lasgs~Dg~I~IWDl~s~~~~--------------------------------------~~~-l~~h~~~V~sl~f 543 (732)
.+|++++.|++|++||+.+.... .+. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998763321 112 3679999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-CeeeeEE--------eccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE--
Q 004737 544 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 611 (732)
Q Consensus 544 spdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~--------~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~-- 611 (732)
+|++. +|++| .|+.|++||+++ +.++..+ .+...+.+++|+|++ ..|++++.|+.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99865 55577 699999999984 4454433 245669999999998 8999999999999999999876
Q ss_pred --EEEEcCCCC------------CEEEEEEeCCCCEEEEEeCCeEEEEECCC-CCCceeEEEeecCCCc-----------
Q 004737 612 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 665 (732)
Q Consensus 612 --i~~l~~h~~------------~V~sla~spdg~~LasgsDg~I~IWDl~t-~~~~~~i~~~~~~~~~----------- 665 (732)
+..+..|.. .|.+++|+|++++|++++++.|++||++. + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 677887876 89999999999999999899999999987 4 444455555321
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC---------------------------------CCCee
Q 004737 666 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 708 (732)
Q Consensus 666 ----I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h---------------------------------~~~V~ 708 (732)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765443 35688
Q ss_pred EEEEeCCCCEEEEEECCCeEEEe
Q 004737 709 SLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 709 sla~spdg~~LaSgs~DG~I~IW 731 (732)
.++|+|++.+||+++.++ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998887 6666
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.4e-33 Score=311.21 Aligned_cols=287 Identities=20% Similarity=0.356 Sum_probs=254.5
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..++. .+..+.+|.+.|++++|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+ +.
T Consensus 138 dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 138 DNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp TSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred CCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence 5667888887775 456788999999999997 6699999999999999999999999999999999999995 56
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 584 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~ 584 (732)
+|++|+.||+|++||+.+++ .+..+.+|...|.++.| ++ .++++++.||.|++||+++++++..+.. ...+.++.
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp EEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence 89999999999999999876 57788899999999999 33 5667899999999999999999988874 45688888
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--
Q 004737 585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-- 661 (732)
Q Consensus 585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-- 661 (732)
| ++..+++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++ |+.|++||++++ .++..+..
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~ 359 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQGPN 359 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECSTT
T ss_pred E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEccCC
Confidence 8 77899999999999999999999999999999999998875 56888888 999999999887 66667665
Q ss_pred -CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE-----ccCCCCeeEEEEeCCCCEEEEEECCCe----EEE
Q 004737 662 -TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAASTVNGMVASASHDKC----VKI 730 (732)
Q Consensus 662 -~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~-----~~h~~~V~sla~spdg~~LaSgs~DG~----I~I 730 (732)
|...|.+++|+ +.+|++++.|+.|++||+.+++.+ .+ ..|.+.|++++|+|++.+|++|+.||. |.|
T Consensus 360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v 437 (445)
T 2ovr_B 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV 437 (445)
T ss_dssp SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEE
Confidence 77889999995 578999999999999999999887 34 378899999999999999999999997 999
Q ss_pred eC
Q 004737 731 WK 732 (732)
Q Consensus 731 WD 732 (732)
||
T Consensus 438 ~d 439 (445)
T 2ovr_B 438 LD 439 (445)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-34 Score=359.40 Aligned_cols=304 Identities=21% Similarity=0.377 Sum_probs=264.9
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC-
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP- 502 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp- 502 (732)
+.|..+++|+..++. .+..+.+|.+.|++++|+|++++||+++.|+.|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 634 ~~d~~i~vw~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 634 GADKTLQVFKAETGE---KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp ETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCC---EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence 346678899988875 4566789999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------
Q 004737 503 -SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------ 575 (732)
Q Consensus 503 -dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------ 575 (732)
++.++++++.|+.|++||+.++. ....+.+|...|.+++|+|++. ++++++.||.|++||+.+++....+.
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred CCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 55689999999999999999876 5778889999999999999964 66699999999999998776544332
Q ss_pred --------------------------------------------------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 576 --------------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILD 605 (732)
Q Consensus 576 --------------------------------------------------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD 605 (732)
+...+.+++|+|++..+++++.++.|++||
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 234578899999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc------e--------------------eEE-
Q 004737 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------E--------------------CIH- 657 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~------~--------------------~i~- 657 (732)
+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+.... . .+.
T Consensus 869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1249)
T 3sfz_A 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948 (1249)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred cCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence 999999999999999999999999999999999 999999997531000 0 000
Q ss_pred -------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 658 -------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 658 -------~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
........+.+++|+|++.++++++.++.|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|+
T Consensus 949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 01123467899999999999999999999999999998877 6678999999999999999999999999999
Q ss_pred EeC
Q 004737 730 IWK 732 (732)
Q Consensus 730 IWD 732 (732)
+||
T Consensus 1029 vwd 1031 (1249)
T 3sfz_A 1029 VWN 1031 (1249)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=9.5e-34 Score=325.92 Aligned_cols=294 Identities=18% Similarity=0.308 Sum_probs=257.2
Q ss_pred ceeeeeecCCCc-eeEEEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCcEEEEEcCCC--------eEEEEeccCCCc
Q 004737 427 RVGRSAEVGKGF-TFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQW 494 (732)
Q Consensus 427 ~~~r~wd~~~g~-~~~~v~~l~~H~~~-V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~--------~~~~~l~~h~~~ 494 (732)
..+++|+..++. ....+..+.+|.+. |++++|+| ++++||+|+.|+.|+|||+.++ +....+..|...
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 457778877651 11356778999999 99999999 9999999999999999999754 677888889999
Q ss_pred eEEEEEcCCCCeEEEEeCC----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 495 ITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
|.+++|+|++++|++++.+ +.|++||.. . .+..+.+|...|.+++|+|++..++++++.|+.|++||+.++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence 9999999999999999988 689999833 3 57788999999999999999887888999999999999999999
Q ss_pred eeEEecc-C---CeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEE-c---CCCCCEEEEEEeCCCCEEEEEe-CC
Q 004737 571 AGVFKCQ-S---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---GHKNQVHSVCWNTSGEYLASVS-DE 640 (732)
Q Consensus 571 i~~~~~~-~---~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l-~---~h~~~V~sla~spdg~~Lasgs-Dg 640 (732)
+..+..+ . .+.+++|+|+ +.++++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++ |+
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 9888744 4 6999999999 999999999999999999999999998 6 899999999999 999999999 99
Q ss_pred eEEEEECCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCC
Q 004737 641 LVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV 715 (732)
Q Consensus 641 ~I~IWDl~t~~~~~~i~~~~~~----~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spd 715 (732)
.|++||++++ .++..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+ .+..|...|.+++| |+
T Consensus 275 ~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 275 TIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred cEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 9999999987 667666655 3667888886 8899999999999999999988776 67788888998888 77
Q ss_pred CCEEEEEECCCeEEEeC
Q 004737 716 NGMVASASHDKCVKIWK 732 (732)
Q Consensus 716 g~~LaSgs~DG~I~IWD 732 (732)
|++++.||.|++||
T Consensus 350 ---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 350 ---LISGSYDGRIMEWS 363 (615)
T ss_dssp ---TEEEETTSCEEETT
T ss_pred ---cEEECCCCeEEEEE
Confidence 77777788888775
No 67
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-33 Score=337.45 Aligned_cols=300 Identities=19% Similarity=0.280 Sum_probs=263.7
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
+..+++|++.++. .+..+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+.+|...|++++|+|++.
T Consensus 34 ~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 34 SGRVEIWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp TSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCEEEEEECCCCc---eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 4678888888875 4566789999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQM 583 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v 583 (732)
+|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.|++||+.++.....+..+ ..+.++
T Consensus 111 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (814)
T ss_dssp EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence 999999999999999998766678889999999999999944578889999999999999988877766643 679999
Q ss_pred EEeC--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737 584 RFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 584 ~~sp--~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
+|+| ++..+++++.||.|++||+++++++..+.+|...|.+++|+|++.+|++++ ||.|++||+.++ ..+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~ 267 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLN 267 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEee
Confidence 9999 899999999999999999999999999999999999999999999999999 999999999887 7788888
Q ss_pred cCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe----------EEE------------------------------
Q 004737 661 CTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TLT------------------------------ 699 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~t~~----------~~~------------------------------ 699 (732)
.+...+.+++|+|++.. +++++.++.+.+|++.... .+.
T Consensus 268 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL 347 (814)
T ss_dssp CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence 88899999999999874 3666677788899875432 111
Q ss_pred ----EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 700 ----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 700 ----~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
...+...+.+++|+|++++|++++ ||.+.||+
T Consensus 348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 123445688999999999999888 89999985
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-33 Score=354.13 Aligned_cols=286 Identities=21% Similarity=0.349 Sum_probs=260.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
...+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
++. .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+.+++++..+.. ...+.+++|+|++..+++++.||.
T Consensus 688 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 688 TGK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TCC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 876 578889999999999999963 46788999999999999999998887764 466999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcC-------------CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-cCCCce
Q 004737 601 ISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKF 666 (732)
Q Consensus 601 I~IwDl~t~~~i~~l~~-------------h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-~~~~~I 666 (732)
|++||++++.....+.. +...+.+++|+|++.++++++++.|.+||+.++ ..+..+. .|...|
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTI 843 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCC
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCce
Confidence 99999999887766542 233788999999999999999999999999987 4444443 788999
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 667 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 667 ~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999999999999887 7789999999999999999999999999999996
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.2e-33 Score=309.79 Aligned_cols=270 Identities=22% Similarity=0.405 Sum_probs=233.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe--ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+++|+||++ ++||+|. |++|+|||+.+++....+ .+|...|++|+|+|+|++||+|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 567999976 4888776 899999999999988766 4678889999999999999999999999999999876 5888
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 608 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t 608 (732)
+.+|...|.++.|++ .++++|+.|+.+++||..... .+..+. +...+..+.+.+++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999873 578899999999999998643 344444 456689999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEeCCCC-EEEEE--e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 609 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 609 ~~----~i~~l~~h~~~V~sla~spdg~-~Lasg--s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
++ .+.....|...|.+++|+|++. +++++ + |++|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 3456777999999999999754 55554 3 899999999987 66666654 467899999999999988
Q ss_pred EE--cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 681 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 681 gs--~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++.+|+||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.4e-34 Score=339.29 Aligned_cols=285 Identities=17% Similarity=0.309 Sum_probs=254.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
..+.+.+|.+.|+|++|+|++++||+++.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+|||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe-ccCCeeEEEEeC-CCCEEEEEEcC
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE 598 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~-~~~~i~~v~~sp-~g~~ll~~s~d 598 (732)
.++. .+..+.+|...|.+++|+|++. ++++++.||.|++||+.++ .+...+. +...+.+++|+| ++..+++++.|
T Consensus 85 ~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 85 NTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCc-EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 9876 4778889999999999999975 5568999999999999886 5566665 446699999999 78899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCC-CCEEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737 599 NYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~-~~V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd 674 (732)
|.|++||+.++.....+..+. ..|.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC
Confidence 999999999887777666554 8999999999 999999999 999999999887 778888889999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC--EEEEEECCCeEEEeC
Q 004737 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 732 (732)
Q Consensus 675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~--~LaSgs~DG~I~IWD 732 (732)
+.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 999999999999999999998877 7778889999999999987 455555 55566663
No 71
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-34 Score=317.10 Aligned_cols=265 Identities=19% Similarity=0.327 Sum_probs=228.1
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-------EEEEeccCCCceEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITD 497 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-------~~~~l~~h~~~V~~ 497 (732)
.|..+++|+..++. ....+.+|...|.+++|+|++++||+|+.|+.|+|||+.+.. ....+.+|.+.|.+
T Consensus 86 ~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~ 162 (380)
T 3iz6_a 86 QDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS 162 (380)
T ss_dssp TTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred CCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence 36677888887774 456788999999999999999999999999999999987532 34567899999999
Q ss_pred EEEcCC-CCeEEEEeCCCeEEEEecCCCCceeEEe-----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCee
Q 004737 498 VRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC 570 (732)
Q Consensus 498 l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l-----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~ 570 (732)
+.|.|+ +..|++|+.|++|++||+.++.. +..+ .+|...|.+++|++.+..+|++|+.|+.|++||++ ..++
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 999996 45799999999999999998764 4444 67999999999998667888899999999999998 4566
Q ss_pred eeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------CCEEEEEEeCCCCEEEEEe-CCe
Q 004737 571 AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS-DEL 641 (732)
Q Consensus 571 i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------~~V~sla~spdg~~Lasgs-Dg~ 641 (732)
+..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+. ..|++++|+|++++|++++ ||.
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 66665 45679999999999999999999999999999999888876543 2489999999999999999 999
Q ss_pred EEEEECCCCCCceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 642 VRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 642 I~IWDl~t~~~~~~i~~~----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
|++||+..+ +.+..+ ..|...|.+++|+|++.+|++++.|+.|++|++...+
T Consensus 322 i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 322 CYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999877 455554 5788999999999999999999999999999987653
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.4e-33 Score=291.32 Aligned_cols=270 Identities=21% Similarity=0.390 Sum_probs=229.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+++|+||+++ +||+|. |++|+|||+++++.+..+. +|...|++++|+|++++|++|+.||+|+|||+++++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 8999999999999887764 678889999999999999999999999999999876 5788
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 608 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t 608 (732)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998887763 5788999999999999987543 33443 456689999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEeCCCCEE-EE--Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 609 QV----CRLKLQGHKNQVHSVCWNTSGEYL-AS--VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 609 ~~----~i~~l~~h~~~V~sla~spdg~~L-as--gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
++ .......+...|.++++++++..+ .. ++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 334556688899999999976533 33 33 789999999876 333 33446778999999999999887
Q ss_pred EE--cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 681 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 681 gs--~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++ .|+.|++||+.+++.+ .+.+|.+.|++++|+|++++|+||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999988 7889999999999999999999999999999997
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.1e-35 Score=319.84 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=234.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
.+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3558999999999999999999999999987776666666 445566789999999999999999999999755 46677
Q ss_pred ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 610 (732)
Q Consensus 532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~ 610 (732)
.+|...|.+++|+|++. +|++++.|+.|++||+.+++++..+. +...|.+++|+|++..|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999964 67799999999999999999888887 45679999999999999999999999999999999
Q ss_pred EEEEEcC---CCCCEEEEE---------------------EeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCC
Q 004737 611 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 664 (732)
Q Consensus 611 ~i~~l~~---h~~~V~sla---------------------~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~ 664 (732)
.+..+.. |...|.+++ |+|++++|++++ |+.|++||++++ ..+..+ ..|..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444555555 478899999999 999999999887 444443 45778
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 665 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 665 ~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~~~--~~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999998 999999999999999998753 25555 6778888865 5788999999999999996
No 74
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.7e-33 Score=294.03 Aligned_cols=269 Identities=16% Similarity=0.253 Sum_probs=234.3
Q ss_pred CCCceeeeeecCCCc--eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 424 PRDRVGRSAEVGKGF--TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~--~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
+.|..+++|++.++. .......+.+|...|++++|+|++++|++++.|+.|++|+............+...+..+.++
T Consensus 58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (340)
T 4aow_A 58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137 (340)
T ss_dssp ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence 346677888876653 234567889999999999999999999999999999999999999998888899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEec-cCC
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 579 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~-~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~ 579 (732)
+++.+|++++.|+.+++||+.........+.+|...|.+++|++++. .++++++.|+.|++||+++++++..+.. ...
T Consensus 138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217 (340)
T ss_dssp TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence 99999999999999999999876655566788999999999998754 4677899999999999999999888764 457
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE-
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE- 658 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~- 658 (732)
|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.|+.|++||+++. ..+..
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~ 293 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDEL 293 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEec
Confidence 99999999999999999999999999999999988874 56899999999998888777999999999876 33333
Q ss_pred --------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 659 --------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 659 --------~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
...|...|++++|+|++++|++++.|+.|+|||+++|.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 34577889999999999999999999999999999875
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.5e-33 Score=311.83 Aligned_cols=271 Identities=22% Similarity=0.401 Sum_probs=241.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
+....+|...|+|++| ++++|++|+.||.|+|||+.+++....+.+|...|++++| ++++|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445578888999988 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe-ccCCeeEEEEeCCCCEEEEEEcC
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i---~~~~-~~~~i~~v~~sp~g~~ll~~s~d 598 (732)
++. .+..+.+|...|.+++|++ .++++|+.||.|++||+.++... ..+. +...+.+++| ++..+++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 5788889999999999974 47789999999999999987765 3333 4456888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~ 677 (732)
+.|++||+++++.+..+.+|...|.+++|+ +.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 999999999999999999999999999994 67899888 999999999987 788889999999999999 7889
Q ss_pred EEEEEcCCeEEEEECCCCe---------EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 678 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~---------~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|++++.|+.|++||+.++. .+ .+.+|...|.+++| ++.+|++++.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999997654 44 77899999999999 688899999999999997
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-33 Score=306.32 Aligned_cols=266 Identities=17% Similarity=0.135 Sum_probs=233.2
Q ss_pred CCceeeeeecCCCc---eeEEEEEecCCCCCeEEEEEcCC----C---CEEEEEECCCcEEEEEcCCCeE-----EEEec
Q 004737 425 RDRVGRSAEVGKGF---TFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLE 489 (732)
Q Consensus 425 ~d~~~r~wd~~~g~---~~~~v~~l~~H~~~V~~lafSpd----g---~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~ 489 (732)
.|..+++|+...+. .+..+..+.+|...|++++|+|+ + ++|++++.|+.|++||+.+++. ...+.
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 113 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 113 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec
Confidence 35667777776654 12345667799999999999999 9 9999999999999999998876 88888
Q ss_pred cC-----CCceEEEEEc----CCCCe-EEEEeCCCeEEEEecCC------CCceeE-----Ee-------ecCCcceEEE
Q 004737 490 EH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSL 541 (732)
Q Consensus 490 ~h-----~~~V~~l~fs----pdg~~-Lasgs~Dg~I~IWDl~s------~~~~~~-----~l-------~~h~~~V~sl 541 (732)
.| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +. .+ ..|...|.++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEE
Confidence 88 5899999999 99999 99999999999999987 443 33 55 4488999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-------cCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeE
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVC 611 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-------~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~ 611 (732)
+|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++++.| +.|++||+++++.
T Consensus 193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 193 DISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 999997 777999999999999999999988886 6789999999999999999999 9999999999999
Q ss_pred EEEEcC-------------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee------cC---------
Q 004737 612 RLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS------CT--------- 662 (732)
Q Consensus 612 i~~l~~-------------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~------~~--------- 662 (732)
+..+.. |...|.+++|+|++.+|++++ |+.|++||+.++ .++..+. .|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCT
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhcccc
Confidence 999998 999999999999999999999 999999999887 7777787 67
Q ss_pred ------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCe
Q 004737 663 ------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 663 ------~~~I~sl~fspdg----------~~L~sgs~dg~I~IwDl~t~~ 696 (732)
...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998764
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=302.36 Aligned_cols=270 Identities=16% Similarity=0.241 Sum_probs=229.4
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEEcCCCe-EEEEeccCCCceEEEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF 500 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd---g~~Lasgs~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~f 500 (732)
.|..+++|+..++..... ...+|...|++++|+|+ +++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|
T Consensus 42 ~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG 119 (357)
T ss_dssp CCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred CCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence 477889999988754322 22378999999999998 6999999999999999999988 88899999999999955
Q ss_pred ------cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCc----ceEEEE----EcCCCCcEEEEEeCCCcEEEEECC
Q 004737 501 ------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 501 ------spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~----~V~sl~----fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
+|++++|++++.|+.|++||+.++...+..+..|.. .|.+++ |+|++ .++++++.|+.|++||++
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECc
Confidence 678999999999999999999987756677766554 899998 56775 567789999999999999
Q ss_pred CCeeeeEEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEE-----EcCCCCCEEEEEEeCCCC-EEEEE
Q 004737 567 NGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLK-----LQGHKNQVHSVCWNTSGE-YLASV 637 (732)
Q Consensus 567 t~~~i~~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t~~~i~~-----l~~h~~~V~sla~spdg~-~Lasg 637 (732)
+++......+...+.+++|+| ++..+++++.||.|++||+++++.... +.+|...|.+++|+|++. +|+++
T Consensus 199 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 199 NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred cCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 999888887888999999999 899999999999999999987654433 348999999999999998 78888
Q ss_pred e-CCeEEEEECCCCCCc----------------eeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeE
Q 004737 638 S-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKT 697 (732)
Q Consensus 638 s-Dg~I~IWDl~t~~~~----------------~~i~~~~~~~~~I~sl~fspdg~~L~-sgs~dg~I~IwDl~t~~~ 697 (732)
+ |+.|++||++..... .++..+..|...|.+++|+|++.+|+ +++.|+.|++||+.+.+.
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 8 999999999865432 46778888999999999999999998 799999999999987654
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-33 Score=301.31 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=205.7
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEEe
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 520 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWD 520 (732)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|.+.|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467899999999999999999999999999999998875 4678899999999999986 489999999999999999
Q ss_pred cCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEEe-ccCCeeEEEEeCC------
Q 004737 521 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPR------ 588 (732)
Q Consensus 521 l~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i---~~~~-~~~~i~~v~~sp~------ 588 (732)
++++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+... ..+. +...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 2456778999999999999983 467789999999999999875322 2222 3456888999987
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEeCCC----CEEEEEe-CCeEEEEECCC
Q 004737 589 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 589 -----------g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~spdg----~~Lasgs-Dg~I~IWDl~t 649 (732)
+.+|++++.|+.|++||++.. +++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999865 5677888999999999999986 7899999 99999999986
Q ss_pred CCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 650 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 650 ~~~~-~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
.... .....+..|...|.+++|+|++.+|++++.|+.|++|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3211 1222345578899999999999999999999999999975
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3e-32 Score=303.55 Aligned_cols=272 Identities=25% Similarity=0.470 Sum_probs=242.3
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 442 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 442 ~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
....+.+|.+.| +| +++++++|++|+.||.|+|||+.+++.+..+.+|...|++++|+ +.+|++|+.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 346688999875 55 44568999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
+.++. .+..+.+|...|.++.|++ ..+++++.||.|++||+.+++++..+.. ...+.++.| ++..+++++.|+
T Consensus 186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 99875 5788889999999999973 4677999999999999999998888764 456888888 678999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
.|++||+++++++..+.+|...|.+++| ++.+|++++ |+.|++||++++ .++..+..|...+.++.++ +.++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 788999998 999999999987 7788888888888888774 5689
Q ss_pred EEEEcCCeEEEEECCCCeEE-EEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 679 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~~~~-~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++++.|+.|++||+.+++.+ .+.. |...|.+++|+ +++|++++.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998887 5544 88899999995 68999999999999996
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-32 Score=325.40 Aligned_cols=267 Identities=16% Similarity=0.268 Sum_probs=227.6
Q ss_pred CCCCceeeeeecCCCce--eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 423 DPRDRVGRSAEVGKGFT--FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~--~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
.+.|..+++|+..++.. ......+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 34567778887765421 2345678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCCCCceeEE---eecCCcceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737 501 SPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC 576 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~---l~~h~~~V~sl~fspdg~-~llaSgs~Dg~I~iWDl~t~~~i~~~~~ 576 (732)
+|++++|++|+.|++|+|||+.... .... ..+|...|.+++|+|++. .++++++.|+.|++||++++++...+..
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9999999999999999999987532 2222 246889999999999863 5788999999999999999998888764
Q ss_pred -cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCcee
Q 004737 577 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 655 (732)
Q Consensus 577 -~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~ 655 (732)
...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+++.|+.|+|||+++. .+
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~~ 635 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESK---SI 635 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---CC
Confidence 4569999999999999999999999999999999888876 456899999999999999988889999999887 44
Q ss_pred EEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 656 IHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 656 i~~~~~~-------------------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
+..+..+ ...+.+++|+|++++|++++.|+.|+|||+..
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 4444321 12378899999999999999999999999853
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-33 Score=337.95 Aligned_cols=306 Identities=12% Similarity=0.048 Sum_probs=235.5
Q ss_pred CCCceeeeeecCCCceeEEE---------EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccC--
Q 004737 424 PRDRVGRSAEVGKGFTFTEF---------QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-- 491 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v---------~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-- 491 (732)
..|..+++|+..++... .. ..+.+|.+.|++++|+|+ +.+|++|+.|+.| |||+++++.+..+..|
T Consensus 117 s~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~ 194 (902)
T 2oaj_A 117 LQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP 194 (902)
T ss_dssp ETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC
T ss_pred cCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC
Confidence 45778899998877532 11 245789999999999996 5789999999999 9999999998888765
Q ss_pred ----------------CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE-Ee---ec-------------CCcce
Q 004737 492 ----------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF---TG-------------HSTTV 538 (732)
Q Consensus 492 ----------------~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l---~~-------------h~~~V 538 (732)
...|++++|+|++.+|++++.||+|++||+++++.... .+ .. |...|
T Consensus 195 ~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V 274 (902)
T 2oaj_A 195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKI 274 (902)
T ss_dssp TTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred CcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence 57799999999999999999999999999988764221 12 11 34578
Q ss_pred EEEEEcC----CCCcEEEEEeCC---------------------------------------------------------
Q 004737 539 MSLDFHP----SKEDLLCSCDNN--------------------------------------------------------- 557 (732)
Q Consensus 539 ~sl~fsp----dg~~llaSgs~D--------------------------------------------------------- 557 (732)
++++|++ ++..++++|+.|
T Consensus 275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 354 (902)
T 2oaj_A 275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQ 354 (902)
T ss_dssp EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSS
T ss_pred eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCC
Confidence 9999953 333556565433
Q ss_pred -------------------CcEEEEECCCCeeeeE-------Ee-ccCCee-----------------------------
Q 004737 558 -------------------SEIRYWSINNGSCAGV-------FK-CQSGAT----------------------------- 581 (732)
Q Consensus 558 -------------------g~I~iWDl~t~~~i~~-------~~-~~~~i~----------------------------- 581 (732)
+.|++||+.++..... +. ++..++
T Consensus 355 sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~ 434 (902)
T 2oaj_A 355 SPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGG 434 (902)
T ss_dssp CSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCS
T ss_pred CCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCC
Confidence 3344444433321110 00 001122
Q ss_pred -----EEEEeCCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ec-----CCCCCEEEEEEeCCCCEEEEEe-CCeEEE
Q 004737 582 -----QMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRV 644 (732)
Q Consensus 582 -----~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~----i~~--l~-----~h~~~V~sla~spdg~~Lasgs-Dg~I~I 644 (732)
.++|+|++..+++++.|+.|++||+.++.. ... +. +|...|.+|+|+|++++|++++ |++|+|
T Consensus 435 ~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 435 VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVL 514 (902)
T ss_dssp BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEE
Confidence 345578888999999999999999987631 111 22 7889999999999999999999 999999
Q ss_pred EECCCCCC------------------------------------------ceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737 645 WSIGSGSK------------------------------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 645 WDl~t~~~------------------------------------------~~~i~~~~~~~~~I~sl~fspdg~~L~sgs 682 (732)
||+.++.. ..++..+..|...|++++|+|+| +|++++
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs 593 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAY 593 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEE
T ss_pred EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEe
Confidence 99976521 13467788899999999999999 999999
Q ss_pred cCCeEEEEECCCCeEEE------E-ccCCCCeeEEEEe-----CCC---CEEEEEECCCeEEEeC
Q 004737 683 CYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASHDKCVKIWK 732 (732)
Q Consensus 683 ~dg~I~IwDl~t~~~~~------~-~~h~~~V~sla~s-----pdg---~~LaSgs~DG~I~IWD 732 (732)
.|++|+|||+++...+. + .+|.+.|++++|+ ||+ .+|++|+.|++|++||
T Consensus 594 ~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 594 AAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp TTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred CCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 99999999998887652 2 2789999999999 885 7999999999999996
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.2e-33 Score=292.59 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=210.2
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 004737 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 563 (732)
Q Consensus 486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iW 563 (732)
..+.+|.+.|++++|+|++++||+|+.|++|+|||+.... ..+..+.+|.+.|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4567899999999999999999999999999999997532 356789999999999999864 24688899999999999
Q ss_pred ECCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEeCC------
Q 004737 564 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 630 (732)
Q Consensus 564 Dl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~V~sla~spd------ 630 (732)
|+++++ .+..+. +...|.+++|+|+ +..|++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 344444 4567999999997 7899999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--
Q 004737 631 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 696 (732)
Q Consensus 631 -------g~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~-- 696 (732)
+++|++++ |+.|++||+++... ......+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 57899998 99999999987642 22566788999999999999985 789999999999999997642
Q ss_pred --EEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 697 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 697 --~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
...+ ..|...|.+++|+|++++|++++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1223 46888999999999999999999999999995
No 83
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.1e-33 Score=298.46 Aligned_cols=264 Identities=17% Similarity=0.235 Sum_probs=228.0
Q ss_pred ceeeeeecCCCceeEEEEEec--CCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 427 RVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~--~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
..+++|+..++.....+..+. .|...|++++|+|+ +++|++|+.|+.|+|||+.+++.+..+.+|...|++++|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 367889988877666665544 38899999999999 679999999999999999999999999999999999999
Q ss_pred cC-CCCeEEEEeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737 501 SP-SLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 575 (732)
Q Consensus 501 sp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~- 575 (732)
+| ++.+|++++.||.|++||+.++. .+..+ .+|...|.+++|+|++ .+|++++.|+.|++||+++++....+.
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccce
Confidence 99 89999999999999999999865 45555 6899999999999986 456688899999999999876554332
Q ss_pred ----------------------------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------------EEE
Q 004737 576 ----------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRL 613 (732)
Q Consensus 576 ----------------------------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--------------~i~ 613 (732)
+...+.+++|+ +..+++++.|+.|++||+++.. .+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 55679999998 6799999999999999998763 477
Q ss_pred EEcCCCCCEEEEEEeCC--CCEEEEEe-CCeEEEEECCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeE
Q 004737 614 KLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETL 687 (732)
Q Consensus 614 ~l~~h~~~V~sla~spd--g~~Lasgs-Dg~I~IWDl~t~~~~~-~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg~I 687 (732)
.+..|...|.+++|+|+ +.+|++++ ||.|++||+.++.... ....+..| ...|.+++|+|++++|++++.|+.|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 88889999999999999 99999999 9999999999875432 55566666 6899999999999999999999999
Q ss_pred EEEECCC
Q 004737 688 ELWNMTE 694 (732)
Q Consensus 688 ~IwDl~t 694 (732)
++||+.+
T Consensus 360 ~iwd~~~ 366 (366)
T 3k26_A 360 WRWDRLR 366 (366)
T ss_dssp EEEEC--
T ss_pred EEEEecC
Confidence 9999853
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=296.06 Aligned_cols=252 Identities=21% Similarity=0.315 Sum_probs=217.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEE
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 518 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~I 518 (732)
+..+.+|.+.|++++|+|++++||+|+.|+.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45688999999999999999999999999999999998 66777889999999999999987 999999999999999
Q ss_pred EecCCCCc-eeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeee--EE-eccCCeeEEEEeC------
Q 004737 519 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG--VF-KCQSGATQMRFQP------ 587 (732)
Q Consensus 519 WDl~s~~~-~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~--~~-~~~~~i~~v~~sp------ 587 (732)
||+.++.. ....+..|...|.+++|+|+. ..++++++.|+.|++||++.+.... .+ .+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 99998652 456778899999999999983 3567789999999999998874332 22 3456799999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEeCC---CCEEEEEe-CCeEEEEECCCCCC
Q 004737 588 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 588 -------~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~V~sla~spd---g~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|++||++++..
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 6899999999999999999875 355678889999999999999 89999999 99999999998643
Q ss_pred ceeEEEee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 653 GECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 653 ~~~i~~~~--~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
........ .+...|.+++|+|++.+|++++.|+.|++|++..
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 22333333 3778899999999999999999999999999873
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-32 Score=298.60 Aligned_cols=267 Identities=17% Similarity=0.242 Sum_probs=229.4
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg 504 (732)
.|..+++|+..++...... ...|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++
T Consensus 111 ~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~ 186 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NR 186 (401)
T ss_dssp ETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ET
T ss_pred CCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CC
Confidence 4567888988887643322 2238999999999999999999999999999999999999999999999999999 56
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 583 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v 583 (732)
.+|++++.||.|++||++........+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+. +...+.++
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~ 265 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV 265 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEE
T ss_pred CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEE
Confidence 7999999999999999997666788899999999999999986 566799999999999999998887775 45679999
Q ss_pred EEeCCCCEEEEEE---cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEE
Q 004737 584 RFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 584 ~~sp~g~~ll~~s---~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~ 657 (732)
+|+|++..+++.+ .|+.|++||+++++++..+. +...|.+++|+|++.+|++++ |+.|++||+.++.. ....
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~~ 343 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQV 343 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeEE
Confidence 9999876666544 59999999999999988886 678899999999999999843 89999999987522 3444
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 56788999999999999999999999999999999998876
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-31 Score=297.24 Aligned_cols=266 Identities=18% Similarity=0.283 Sum_probs=230.9
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg 504 (732)
.|..+++|+..+|.... +..+.+|...|+||+|+|||++||+|+.|+.|+|||+++++.+..+.+|...|.+++|+ +
T Consensus 123 ld~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~ 199 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S 199 (420)
T ss_dssp ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred eCCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C
Confidence 36788999999886433 34567899999999999999999999999999999999999999999999999998885 6
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----e-EEeccCC
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----G-VFKCQSG 579 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i----~-~~~~~~~ 579 (732)
.+|++|+.|+.+++||.......+..+.+|...+..+.|+|++ .++++++.|+.|++||..+++.. . ...+...
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~ 278 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence 7999999999999999998877788999999999999999996 56669999999999999876532 2 2234567
Q ss_pred eeEEEEeCCCCEEE-EE--EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCc
Q 004737 580 ATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKG 653 (732)
Q Consensus 580 i~~v~~sp~g~~ll-~~--s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~ 653 (732)
|.+++|+|.+..++ ++ +.|+.|++||+.++.+...+.. ...+.++.|++++..+++++ |+.|+|||+.++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--- 354 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 354 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---
Confidence 99999999766554 33 3589999999999999988875 46789999999999888764 789999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.++..+.+|...|++++|+|++.+|++++.|++|+|||+.+....
T Consensus 355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 788899999999999999999999999999999999999776544
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.1e-32 Score=291.44 Aligned_cols=269 Identities=17% Similarity=0.225 Sum_probs=227.6
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--eccCCCceEEEEEcCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS 503 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspd 503 (732)
+..+++|+..++. +..+..+.+|...|++++|+|++++|++++.|+.|++||+++++.... +..|...|.+++|+|+
T Consensus 29 d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 5677888877763 346777889999999999999999999999999999999998875544 4679999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCc---eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC--------------
Q 004737 504 LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------------- 566 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~---~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-------------- 566 (732)
+++|++++.|+.|++||++.... ......+|...|.+++|+|++ .++++++.|+.|++||++
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccc
Confidence 99999999999999999998663 233446789999999999986 566688999999999954
Q ss_pred ----CCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCe
Q 004737 567 ----NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 641 (732)
Q Consensus 567 ----t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~ 641 (732)
.++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++.+|+++.|+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 266 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF 266 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSS
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCe
Confidence 567777775 446699999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEECCC--CC-----------------------------CceeE------EEe-ecCCCceEEEEEe-CCC---CEEE
Q 004737 642 VRVWSIGS--GS-----------------------------KGECI------HEL-SCTGNKFHSCVFH-PTF---PSLL 679 (732)
Q Consensus 642 I~IWDl~t--~~-----------------------------~~~~i------~~~-~~~~~~I~sl~fs-pdg---~~L~ 679 (732)
|++|++.+ +. ..... ..+ ..|...|.+++|. +++ .+|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 31 00110 222 3788999999866 666 8999
Q ss_pred EEEcCCeEEEEECCCCe
Q 004737 680 VIGCYETLELWNMTENK 696 (732)
Q Consensus 680 sgs~dg~I~IwDl~t~~ 696 (732)
+++.|+.|++||+.+++
T Consensus 347 s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEETTSEEEEEEHHHHH
T ss_pred EecCCCceEEEEecChh
Confidence 99999999999986643
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=284.74 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=232.6
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..++. .+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+. |...|.+++|+|++.
T Consensus 53 dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 128 (369)
T 3zwl_B 53 DSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN 128 (369)
T ss_dssp SSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred CCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC
Confidence 4567788877764 456788999999999999999999999999999999999999998887 888999999999999
Q ss_pred eEEEEeCC-----CeEEEEecCCCCc----------eeEEeecCCc--ceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-
Q 004737 506 RLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN- 567 (732)
Q Consensus 506 ~Lasgs~D-----g~I~IWDl~s~~~----------~~~~l~~h~~--~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t- 567 (732)
+|++++.+ +.|++||+..... ....+..|.. .+.+++|+|++. ++++++.||.|++||+++
T Consensus 129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT
T ss_pred EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC
Confidence 99999999 9999999986542 2345556666 899999999865 566888999999999998
Q ss_pred CeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-----
Q 004737 568 GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----- 640 (732)
Q Consensus 568 ~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg----- 640 (732)
.+.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++ ++
T Consensus 208 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 208 YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 67777776 45679999999999999999999999999999999988887 788999999999999999988 66
Q ss_pred ---------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 641 ---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 641 ---------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
.|++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|++|++..+.
T Consensus 287 ~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp --------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 8999999887 7788888999999999999999999999999999999997654
No 89
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.1e-32 Score=302.92 Aligned_cols=278 Identities=15% Similarity=0.241 Sum_probs=235.4
Q ss_pred CeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCe----EEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC
Q 004737 452 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 452 ~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
...+++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 35568999877544 457889999999997642 3345778999999999999 99999999999999999999863
Q ss_pred ------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--e-ccCCeeEEEEeCCCCEEEEEE
Q 004737 526 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 526 ------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--~-~~~~i~~v~~sp~g~~ll~~s 596 (732)
..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++++..+ . +...+.+++|+|++..|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 3467889999999999999998788889999999999999999999888 3 456799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEE-cCCCCC-EEEEEEeCCCCEEEEE---e-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737 597 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 597 ~dg~I~IwDl~t~~~i~~l-~~h~~~-V~sla~spdg~~Lasg---s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~ 670 (732)
.|+.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++ + |+.|++||+++.........+ .+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEE
Confidence 9999999999999999888 678776 8999999999999998 5 899999999986532223222 4567799999
Q ss_pred EeCCCCEEEEEE-cCCeEEEEECCCCe--EEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 671 FHPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 671 fspdg~~L~sgs-~dg~I~IwDl~t~~--~~~~~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 33333 36699999999999988774 567899995
No 90
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3e-31 Score=292.89 Aligned_cols=296 Identities=9% Similarity=0.050 Sum_probs=249.4
Q ss_pred eeeecCCC-ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-----EeccCCCceEEEEEcCC
Q 004737 430 RSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPS 503 (732)
Q Consensus 430 r~wd~~~g-~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~V~~l~fspd 503 (732)
++|.++.. ..+..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|+++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 45544331 2334555566554 46699999988788888889999999999998887 34578899999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEE
Q 004737 504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM 583 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v 583 (732)
+.++++++.|+.|++||++++. .+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.++
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 259 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL 259 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE
Confidence 9999999999999999999866 467777899999999999998888888888999999999999998888877789999
Q ss_pred EEeCCCCEEEEEE--------cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE-e-CCeEEEEECCCCCCc
Q 004737 584 RFQPRLGRILAAA--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKG 653 (732)
Q Consensus 584 ~~sp~g~~ll~~s--------~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg-s-Dg~I~IWDl~t~~~~ 653 (732)
+|+|++..+++++ .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~--- 335 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK--- 335 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---
Confidence 9999999999988 47899999999998777663 56689999999999866554 5 899999999876
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCE
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 718 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~---------------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~ 718 (732)
+.+..+. +...+.+++|+|+++++++++. ||.|++||+.+++.+....+...+.+++|+|++++
T Consensus 336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRY 414 (433)
T ss_dssp EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCE
T ss_pred cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCE
Confidence 5555554 5678999999999999998887 46999999999998855555678999999999999
Q ss_pred EEEEEC-CCeEEEeC
Q 004737 719 VASASH-DKCVKIWK 732 (732)
Q Consensus 719 LaSgs~-DG~I~IWD 732 (732)
|++++. |+.|+||+
T Consensus 415 l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 415 LVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEE
Confidence 998875 99999996
No 91
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-33 Score=296.52 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.5
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-eeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEE
Q 004737 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWD 564 (732)
.+.+|.+.|++++|+|++++||+|+.|++|+|||+.++.. .+..+.+|...|.+++|++. ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 45678999999999999863 246777999999999999
Q ss_pred CCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCC------
Q 004737 565 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 630 (732)
Q Consensus 565 l~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spd------ 630 (732)
+++++ ....+. +...|.+++|+|+ +..|++++.|+.|++||++... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 444444 4567999999998 7789999999999999998763 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 004737 631 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 631 -----------g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~t 694 (732)
+.+|++++ |+.|++||++......++..+..|...|.+++|+|++ .+|++++.|++|++||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46889888 9999999997654335677788899999999999986 7899999999999999976
Q ss_pred C---e--EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 695 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 695 ~---~--~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
. . ...+..|...|.+++|+|++.+|++++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124557899999999999999999999999999996
No 92
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.4e-32 Score=293.03 Aligned_cols=259 Identities=14% Similarity=0.143 Sum_probs=214.4
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEecc---CCCceEEEEEc
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS 501 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~V~~l~fs 501 (732)
|..+++|+..++.... ...+.+|...|++++|+| ++++|++++.|+.|++||+.+ ..+..+.. |...|.+++|+
T Consensus 95 dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp TSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred CCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence 4567778877665432 223457999999999999 789999999999999999996 44555543 44889999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEecc
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQ 577 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~~~ 577 (732)
|++++|++++.|+.|++||++ + ..+..+.+|...|.+++|+|++..++++++.|+.|++||+++ +.++..+.+.
T Consensus 173 ~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 173 VSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp TTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred CCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence 999999999999999999995 3 357888999999999999999877888999999999999997 6777778788
Q ss_pred CCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----------------CCEEEEEEeCCCCEEEEEe-
Q 004737 578 SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK-----------------NQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 578 ~~i~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----------------~~V~sla~spdg~~Lasgs- 638 (732)
..+.+++|+| ++.+|++++.|+.|++||+++++....+.+|. ..+..++|+|++++ +++
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 8899999999 99999999999999999999876655554332 34445666677666 444
Q ss_pred CCeEEEEECCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 639 DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 639 Dg~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
|+.|++||+.++ +++..+.. +...+..++|+|++.+|++++ |+.|++||+++
T Consensus 329 d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999999887 66777766 456778889999999999996 99999999875
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=278.85 Aligned_cols=258 Identities=16% Similarity=0.209 Sum_probs=224.3
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEc
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fs 501 (732)
.|..+++|+..++. ....+..|...|.+++|+|++++|++++.|+.|++|++... +.+..+.+|...|.+++|
T Consensus 37 ~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 112 (313)
T 3odt_A 37 RDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF- 112 (313)
T ss_dssp TTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred cCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence 46678888887764 45567789999999999999999999999999999998754 567788899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCC
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSG 579 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~ 579 (732)
++++|++++.|+.|++|| . ......+..|...|.+++|.|....++++++.|+.|++||. .+....+. +...
T Consensus 113 -~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~ 186 (313)
T 3odt_A 113 -QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDV 186 (313)
T ss_dssp -ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSC
T ss_pred -cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCccc
Confidence 577999999999999999 2 34577888999999999999944567789999999999994 45555554 5567
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~ 658 (732)
+.+++|+|++. +++++.|+.|++||+++++.+..+..|...|.+++|+|++. |++++ |+.|++||+.++ .++..
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~---~~~~~ 261 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENG---SLKQV 261 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTC---CEEEE
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCC---ceeEE
Confidence 99999999977 99999999999999999999999999999999999999995 55666 999999999987 67788
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
+..+...|.+++|+|++. +++++.|+.|++||+.+++..
T Consensus 262 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 262 ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 888899999999999998 778999999999999987765
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=287.42 Aligned_cols=250 Identities=20% Similarity=0.359 Sum_probs=214.2
Q ss_pred eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcE
Q 004737 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 560 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I 560 (732)
+.+..+.+|...|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998432 3456788999999999998762 4677799999999
Q ss_pred EEEECCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeC----
Q 004737 561 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 629 (732)
Q Consensus 561 ~iWDl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~sp---- 629 (732)
++||+.+++ .+..+. +...+.+++|+|+ +..+++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 444444 4567999999999 899999999999999999987 34556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 004737 630 ---------SGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 630 ---------dg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspd---g~~L~sgs~dg~I~IwDl~t~ 695 (732)
++.+|++++ |+.|++||+++... ..++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999999 99999999987643 2456678889999999999999 899999999999999999887
Q ss_pred e----EE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 696 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 696 ~----~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 3 22 2334889999999999999999999999999996
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6e-31 Score=285.92 Aligned_cols=279 Identities=15% Similarity=0.280 Sum_probs=206.3
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC---CCeEEEEeCCCeEEEEecC
Q 004737 447 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 447 ~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~I~IWDl~ 522 (732)
.+|...|++++|+| ++.+|++++.|+.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+.
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 36999999999999 78899999999999999999999888886 7788999999984 4599999999999999999
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE----------------eccCCeeEEEE
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRF 585 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~----------------~~~~~i~~v~~ 585 (732)
++. .+..+.+|...|.+++|+|++..++++++.||.|++||++++. ++..+ .+...+.+++|
T Consensus 175 ~~~-~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSC-CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred Ccc-eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 876 4778889999999999999998888899999999999998765 33333 24466999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe
Q 004737 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 586 sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~ 659 (732)
+|++.++++++.|+.|++||+++++....+..+. .....+.......+++++.|+.|++||+.++ .++..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~ 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITML 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEE
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeee
Confidence 9999999999999999999999887654433221 1222233334455666666999999999987 788888
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeC-CCCEEEEEECCCeEEEeC
Q 004737 660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 732 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWD 732 (732)
..|...|.+++|+|++.+|++++.|+.|++||+.+++.+......... ..+.+ ....+.+++.|+.|+||+
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 999999999999999999999999999999999998877332222222 22333 334556677899999995
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-30 Score=271.25 Aligned_cols=263 Identities=19% Similarity=0.282 Sum_probs=226.2
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..+|..... ..+.+|...|++++|+|++++||+|+.|++|+|||+++++.+..+.+|...+.++.+ ++.
T Consensus 44 D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~ 120 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY 120 (318)
T ss_dssp TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETT
T ss_pred CCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCC
Confidence 67889999998865433 346789999999999999999999999999999999999999999999998887666 467
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----eEEeccCCe
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGA 580 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-----~~~~~~~~i 580 (732)
+|++++.++.+++|+.......+..+.+|...+.++.|.+++ .++++++.|+.|++||+++++.. ........+
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 199 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 199 (318)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence 999999999999999998887888999999999999999996 45669999999999999876532 222244668
Q ss_pred eEEEEeCCCCEEE---EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCce
Q 004737 581 TQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGE 654 (732)
Q Consensus 581 ~~v~~sp~g~~ll---~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~ 654 (732)
..+.+.+.+..++ +++.++.|++||.+......... +...+..++|++++..+++++ |+.|+|||++++ +
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~ 275 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---A 275 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---C
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---c
Confidence 9999999876544 33457899999999988776655 678899999999999887754 889999999987 7
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 888999999999999999999999999999999999997653
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-32 Score=293.37 Aligned_cols=266 Identities=14% Similarity=0.140 Sum_probs=210.3
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEeccCCCceEEEEEc
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~l~fs 501 (732)
.|..+++|+..++. +..+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|++++|+
T Consensus 31 ~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 31 ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence 45677888887652 34567788999999999999999999999999999999999877 677788899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCc--eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC------------
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------ 566 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~------------ 566 (732)
|++++|++++.|+.|++||+++... ....+.+ |...|.+++|+|++ .+|++++.|+.|++||+.
T Consensus 110 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 188 (377)
T 3dwl_C 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASV 188 (377)
T ss_dssp TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCS
T ss_pred CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccc
Confidence 9999999999999999999997652 3566666 99999999999986 567799999999999985
Q ss_pred ------CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE----EEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737 567 ------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLAS 636 (732)
Q Consensus 567 ------t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~----i~~l~~h~~~V~sla~spdg~~Las 636 (732)
.++++..+.+...+.+++|+|++.+|++++.|+.|++||+++++. +..+.+|...|.+++|+|++++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp SCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred cccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 244555555566799999999999999999999999999999876 7778889999999999999999999
Q ss_pred EeCCeEEEEECCCCCC---------------------------c---------eeEEE-------------eecCCCceE
Q 004737 637 VSDELVRVWSIGSGSK---------------------------G---------ECIHE-------------LSCTGNKFH 667 (732)
Q Consensus 637 gsDg~I~IWDl~t~~~---------------------------~---------~~i~~-------------~~~~~~~I~ 667 (732)
++++.+.+|+...... . ..+.. ...|...|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~ 348 (377)
T 3dwl_C 269 GYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348 (377)
T ss_dssp ESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred EcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence 9977667887752210 0 00000 112788999
Q ss_pred EEEEeCCC-C---EEEEEEcCCeEEEEEC
Q 004737 668 SCVFHPTF-P---SLLVIGCYETLELWNM 692 (732)
Q Consensus 668 sl~fspdg-~---~L~sgs~dg~I~IwDl 692 (732)
++.+.+.. . .|++++.||.|++||+
T Consensus 349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 99976654 3 5999999999999985
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.4e-30 Score=282.72 Aligned_cols=274 Identities=14% Similarity=0.157 Sum_probs=216.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEec
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 521 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl 521 (732)
+..+.+|.+.|+|++|+|||++||+|+.++ ++|||+++++.......+ .+..++|.++++++ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445688999999999999999999988764 789999988776654332 48888999988877 56777899999999
Q ss_pred CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCCeeEEEEeCCCCEEEE--EEcC
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE 598 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~i~~v~~sp~g~~ll~--~s~d 598 (732)
.+++ .+..+. |...|.++.|+++ .++ ++. |+.|++||+.++ +.+..+.. ....+++++ ..+++ ++.+
T Consensus 89 ~~~~-~~~~~~-~~~~v~~v~~~~~--~~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQ-DVSRIK-VDAPVKDLFLSRE--FIV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTE-EEEEEE-CSSCEEEEEECSS--EEE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCc-EEEEEE-CCCceEEEEEcCC--EEE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 9876 355555 6779999999976 233 333 789999999988 77666654 444566666 56666 4678
Q ss_pred CeEEEEECCCCe----------------EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEECCCCCCceeEEEee
Q 004737 599 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 599 g~I~IwDl~t~~----------------~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~-I~IWDl~t~~~~~~i~~~~ 660 (732)
|.|++||++++. ++..+.+|...|++++|+|++.+|++++ |++ |++||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2677889999999999999999999999 998 999999987 7778887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---E--------------------Ec-cCCCCeeEEEEeC
Q 004737 661 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---T--------------------LS-AHDKLVSSLAAST 714 (732)
Q Consensus 661 -~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~---~--------------------~~-~h~~~V~sla~sp 714 (732)
+ |...|.+++|+|++.+|++++.|+.|++||+...... . +. .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765311 1 00 1122347799999
Q ss_pred CCCEEEEEECCCeEEEeC
Q 004737 715 VNGMVASASHDKCVKIWK 732 (732)
Q Consensus 715 dg~~LaSgs~DG~I~IWD 732 (732)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-32 Score=297.93 Aligned_cols=264 Identities=16% Similarity=0.210 Sum_probs=218.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCC---CCce-eEE
Q 004737 457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 530 (732)
Q Consensus 457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s---~~~~-~~~ 530 (732)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4677777777654 487 556788888 88999999999999 999999999999999999876 3311 122
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEEe-------------ccCCeeEEE--EeCCCCEE
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI 592 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~---t~~~i~~~~-------------~~~~i~~v~--~sp~g~~l 592 (732)
..+|...|.+++|+|++ .+|++++.||.|++||++ .+++...+. ....+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 22599999999999985 566799999999999995 454444333 233455665 55788999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceEE
Q 004737 593 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 668 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~~~~~I~s 668 (732)
++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 899999999999999999999 999999999986 7777775 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCeEE-EEcc--------------------------CCCCeeEEEEeCCCC
Q 004737 669 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 717 (732)
Q Consensus 669 l~fsp----dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~--------------------------h~~~V~sla~spdg~ 717 (732)
++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96665 5779999999999999999998876 3332 55678999999 778
Q ss_pred EEEEEECCCeEEEeC
Q 004737 718 MVASASHDKCVKIWK 732 (732)
Q Consensus 718 ~LaSgs~DG~I~IWD 732 (732)
+|++|+.||.|++||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999997
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.4e-30 Score=286.40 Aligned_cols=272 Identities=16% Similarity=0.176 Sum_probs=222.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEecc-------------------------------------
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 490 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~------------------------------------- 490 (732)
.+|.|++|++||++|+++. ++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4689999999999777664 7899999999988 5555543
Q ss_pred -----------------CCCceEEEEEcCCCCeE-EEEeCCCeEEEEecC--CCCceeEEee--cCCcceEEEEEcCCCC
Q 004737 491 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 548 (732)
Q Consensus 491 -----------------h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~--s~~~~~~~l~--~h~~~V~sl~fspdg~ 548 (732)
|.+.|++++|+|++++| ++++.||.|+|||+. ++. .+..+. .|...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~- 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDD- 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTS-
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCC-
Confidence 33379999999999996 889999999999998 655 355554 577899999999997
Q ss_pred cEEEEEeCCCcEEEEECCCCeeee----EEe-ccCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeEEEE-EcCCC
Q 004737 549 DLLCSCDNNSEIRYWSINNGSCAG----VFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 619 (732)
Q Consensus 549 ~llaSgs~Dg~I~iWDl~t~~~i~----~~~-~~~~i~~v~~sp~---g~~ll~~s~dg~I~IwDl~t~~~i~~-l~~h~ 619 (732)
.+|++++.+|.|++|++.+++... .+. +...+.+++|+|+ +.+|++++.|+.|++||+++++++.. +.+|.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 455688889999999998877553 333 4567999999999 88999999999999999999987777 55899
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 004737 620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 673 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-------------------------~~~~~I~sl~fsp 673 (732)
..|.+++|+ ++.+|++++ |+.|++||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999987 4454443 2345789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---eEE-EEccCCCCeeEEEEeCCCCEEEEEEC-------CCeEEEe
Q 004737 674 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 731 (732)
Q Consensus 674 dg~~L~sgs-~dg~I~IwDl--~t~---~~~-~~~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IW 731 (732)
++++|++++ .++.|++|++ .++ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8899999999 554 444 45566 889999999954 5555433 4557777
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.98 E-value=7.3e-31 Score=292.35 Aligned_cols=265 Identities=14% Similarity=0.198 Sum_probs=210.8
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEecc--CCCceEEEEEcC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP 502 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fsp 502 (732)
|..+++|++..+.. ..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||+++......... +...+.+++|+|
T Consensus 141 dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 141 GGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp TSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred CCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence 45567777665532 23345679999999999998 789999999999999999987655444433 345688999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE----eccC
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQS 578 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~----~~~~ 578 (732)
++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..++++++.|+.|++||+++.+....+ .+..
T Consensus 220 ~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~ 297 (435)
T 4e54_B 220 SSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH 297 (435)
T ss_dssp TTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred CCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence 9999999999999999999753 467788999999999999999899999999999999999887654333 3456
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC------CEEEEEEeCCCCEEEEEe-------------C
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWNTSGEYLASVS-------------D 639 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~------~V~sla~spdg~~Lasgs-------------D 639 (732)
.|.+++|+|++.+|++++.|+.|++||+.++.+...+..|.. .+..+.|+|++.+++++. +
T Consensus 298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 799999999999999999999999999999887777766543 234556777777766654 2
Q ss_pred CeEEEEECCCCCCceeEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 640 ELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTENKT 697 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~t~~~ 697 (732)
+.|++||..++ .++..+ ..|...|.++ +|+|++.+|+++ .|+.|+|||+++++.
T Consensus 378 ~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 378 RTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC----
T ss_pred CEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcCee
Confidence 47999999887 555554 4577778877 699999988775 488999999998865
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.3e-30 Score=286.29 Aligned_cols=271 Identities=17% Similarity=0.212 Sum_probs=223.2
Q ss_pred CCCCceeeeeecCCCce-eEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------eEEEEeccCCC
Q 004737 423 DPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQ 493 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~-~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~ 493 (732)
...+..+++|+..+... ...+..+.+|.+.|++++|+| ++++|++|+.|+.|+|||+.++ +.+..+.+|..
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 34567788888755432 235567889999999999999 9999999999999999999987 56788899999
Q ss_pred ceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEe--ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737 494 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 570 (732)
Q Consensus 494 ~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l--~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~ 570 (732)
.|++++|+|++ .+|++++.|+.|+|||+.++. .+..+ .+|...|.+++|+|++. +|++++.|+.|++||+++++.
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTV 210 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCce
Confidence 99999999998 699999999999999999876 46667 78999999999999865 555888999999999999999
Q ss_pred eeEE-eccCC--eeEEEEeCCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-cCCCCCEEEEEEeCCCCEEEE-Ee-CC
Q 004737 571 AGVF-KCQSG--ATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQVHSVCWNTSGEYLAS-VS-DE 640 (732)
Q Consensus 571 i~~~-~~~~~--i~~v~~sp~g~~ll~~---s~dg~I~IwDl~t~~~-i~~l-~~h~~~V~sla~spdg~~Las-gs-Dg 640 (732)
+..+ ..+.. +.++.|+|++.+++++ +.|+.|++||+++... +... ..|...|.+++|+|++.+|++ ++ |+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 8887 44332 7899999998888888 5899999999998643 2222 247788999999999999865 54 99
Q ss_pred eEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 641 LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 641 ~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.|++||+.++.. ...+..+. +...|.+++|+|++.++++ .++.+++|++.++...
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 999999998753 22333333 5688999999999987654 5669999999887654
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=284.93 Aligned_cols=261 Identities=14% Similarity=0.248 Sum_probs=210.6
Q ss_pred CceeeeeecCCCc--------eeEEEEEecCCC------------CCeEEEEEcCCC--CEEEEEECCCcEEEEEcCCCe
Q 004737 426 DRVGRSAEVGKGF--------TFTEFQLIPAST------------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT 483 (732)
Q Consensus 426 d~~~r~wd~~~g~--------~~~~v~~l~~H~------------~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t~~ 483 (732)
|..+++|+..++. .+..+..+.+|. +.|++++|+|++ .+|++++.|+.|+|||+.+++
T Consensus 49 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~ 128 (447)
T 3dw8_B 49 GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERD 128 (447)
T ss_dssp TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEE
T ss_pred CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccccc
Confidence 4455666655443 344577888998 899999999998 799999999999999987644
Q ss_pred EE---------------------------------------EE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 484 VK---------------------------------------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 484 ~~---------------------------------------~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
.. .. ..+|...|++++|+|++++|++| .|+.|+|||+..
T Consensus 129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 207 (447)
T 3dw8_B 129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI 207 (447)
T ss_dssp EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE
T ss_pred CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC
Confidence 32 12 36799999999999999999998 899999999985
Q ss_pred CCceeE-------EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEEeccC-------------C
Q 004737 524 PDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQS-------------G 579 (732)
Q Consensus 524 ~~~~~~-------~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~----i~~~~~~~-------------~ 579 (732)
....+. .+.+|...|.+++|+|++..+|++++.||.|++||+++++. +..+..+. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 208 TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 443343 35689999999999999867888999999999999999886 56666543 7
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCC---------------EEEEEEeCCCCEEEEEe-CCeE
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVCWNTSGEYLASVS-DELV 642 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~---------------V~sla~spdg~~Lasgs-Dg~I 642 (732)
+.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++|+|++.+|++++ |+.|
T Consensus 288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v 366 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF 366 (447)
T ss_dssp EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence 999999999999999988 9999999997 7888888877532 33499999999999999 9999
Q ss_pred EEEECCCCCCceeEEEee---------------------------------cCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 643 RVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 643 ~IWDl~t~~~~~~i~~~~---------------------------------~~~~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
++||+.++. .+. +. .....|..++|+|++.+|++++.++ +++
T Consensus 367 ~iwd~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~ 441 (447)
T 3dw8_B 367 RMFDRNTKR---DIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYI 441 (447)
T ss_dssp EEEETTTCC---EEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEE
T ss_pred EEEEcCCCc---cee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eee
Confidence 999998873 221 11 2235688999999999888877765 888
Q ss_pred EECC
Q 004737 690 WNMT 693 (732)
Q Consensus 690 wDl~ 693 (732)
|..+
T Consensus 442 ~~~~ 445 (447)
T 3dw8_B 442 FQDK 445 (447)
T ss_dssp EECC
T ss_pred eccc
Confidence 8654
No 104
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=4.5e-30 Score=285.52 Aligned_cols=272 Identities=18% Similarity=0.355 Sum_probs=219.9
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~ 505 (732)
|..+++|+..++. .+..+.+|.+.|++++| ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++ .
T Consensus 152 dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~ 224 (435)
T 1p22_A 152 DNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--G 224 (435)
T ss_dssp SSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--T
T ss_pred CCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--C
Confidence 5567778877764 45668899999999999 788999999999999999999999999999999999999974 5
Q ss_pred eEEEEeCCCeEEEEecCCCCce--eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeE
Q 004737 506 RLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ 582 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~--~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~ 582 (732)
+|++|+.||.|++||+.++... ...+.+|...|.+++|. ..++++++.||.|++||+++++++..+.. ...+.+
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 301 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEE
Confidence 9999999999999999876642 26778999999999994 45777999999999999999999988874 456888
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------cee
Q 004737 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GEC 655 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------~~~ 655 (732)
+.++ +..+++++.||.|++||+++++++..+.+|...|.+++| ++.+|++++ ||.|++||+.+... ..+
T Consensus 302 ~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred EEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 8884 579999999999999999999999999999999999999 788999999 99999999976531 127
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEe
Q 004737 656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 713 (732)
Q Consensus 656 i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~s 713 (732)
+..+..|...|.+++| ++.+|++++.|+.|++||+.+...........++.++.|.
T Consensus 378 ~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp EEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred eeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 8888899999999999 7788999999999999999887766444444455555554
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6e-30 Score=284.70 Aligned_cols=245 Identities=18% Similarity=0.320 Sum_probs=210.0
Q ss_pred EEeccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCC---------CceeEEeecCCcceEEEEEcCCCCcEEEEEe
Q 004737 486 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 555 (732)
Q Consensus 486 ~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~---------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs 555 (732)
.....|.+.|++++|+|+ +.+|++++.||.|+|||+... ......+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999862 2356788899999999999999876888999
Q ss_pred CCCcEEEEECCCCee-------eeEE-eccCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 004737 556 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 623 (732)
Q Consensus 556 ~Dg~I~iWDl~t~~~-------i~~~-~~~~~i~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~ 623 (732)
.||.|++||+..+.. ...+ .+...+.+++|+| ++..|++++.|+.|++||+++. +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 2333 2456699999999 6778889999999999999987 56777888999999
Q ss_pred EEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 004737 624 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 694 (732)
Q Consensus 624 sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t------ 694 (732)
+++|+|++. +|++++ |+.|++||+++.. .++..+..|...|.+++|+|++. +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677888 9999999998743 46777888999999999999995 688999999999999987
Q ss_pred --------CeEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEeC
Q 004737 695 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 732 (732)
Q Consensus 695 --------~~~~-~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWD 732 (732)
...+ ...+|...|.+++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2333 6678999999999999999 999999999999996
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-31 Score=284.20 Aligned_cols=265 Identities=8% Similarity=0.024 Sum_probs=210.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---------CCCce
Q 004737 457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 527 (732)
Q Consensus 457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---------s~~~~ 527 (732)
.+.+|+.+|++|+.||.|+|||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445688899999999999999999999888876 467888899988 9999999999999766 33322
Q ss_pred eEEeecCCcceEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 528 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
.....+|...|.+++|+| ++ .++++++.||.|++||+++++++.... ....+.+++|+|++.++++++.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 75 566799999999999999999876653 3346999999999999999999999999
Q ss_pred EECCCCeEE-EEEcC-CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 004737 604 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 679 (732)
Q Consensus 604 wDl~t~~~i-~~l~~-h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I--~sl~fspdg~~L~ 679 (732)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++++|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333322233333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCeEE-EEccCCCCeeEEEEeC---CCCEEEEEECCCeEEEe
Q 004737 680 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 731 (732)
Q Consensus 680 sgs~-dg~I~IwDl~t~~~~-~~~~h~~~V~sla~sp---dg~~LaSgs~DG~I~IW 731 (732)
+++. ++.|++|++...... .. ..+..++|.+ +...|++++.||.+.+|
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999999655322 22 4566777777 77788888888887765
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=2.1e-29 Score=274.80 Aligned_cols=262 Identities=11% Similarity=0.110 Sum_probs=204.2
Q ss_pred CCceeeeeecCCCce-----e--EEEEEecCCCCCeEEEEEcCCCCEEEEEE-----------CCCcEEEEEcCCCeEE-
Q 004737 425 RDRVGRSAEVGKGFT-----F--TEFQLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK- 485 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~-----~--~~v~~l~~H~~~V~~lafSpdg~~Lasgs-----------~Dg~I~VWd~~t~~~~- 485 (732)
.+..+++|++..+.. + .....+.+|.+.|.|++++ ++.+++|. .|+.|++|++.+....
T Consensus 41 i~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~ 118 (365)
T 4h5i_A 41 IPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL 118 (365)
T ss_dssp CCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE
T ss_pred CCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE
Confidence 345678888765421 1 1223578899999998875 55676654 4778999998654321
Q ss_pred ---EEe-----ccCCCceEEEEEcCCCCeEEEEe--CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe
Q 004737 486 ---STL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 555 (732)
Q Consensus 486 ---~~l-----~~h~~~V~~l~fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs 555 (732)
... ..+...+.+++|+|||++|++++ .|++|+|||+.+... +..+ .|...|.+++|+|++. ++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~-~~~~~V~~v~fspdg~-~l~s~s 195 (365)
T 4h5i_A 119 EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI-ETRGEVKDLHFSTDGK-VVAYIT 195 (365)
T ss_dssp EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSS-EEEEEC
T ss_pred EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe-CCCCceEEEEEccCCc-eEEecc
Confidence 111 23456799999999999987655 689999999998663 4444 4788899999999975 555777
Q ss_pred CCCcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeE----EEEEcCCCCCEEE
Q 004737 556 NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHS 624 (732)
Q Consensus 556 ~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t~~~----i~~l~~h~~~V~s 624 (732)
++.+++|+..++..+.... +...+.+++|+|++..+++++.++ .+++||+..... ...+.+|...|++
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 196 -GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp -SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred -ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 4557777777777654432 234589999999999999999887 688899877643 3467789999999
Q ss_pred EEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 625 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 625 la~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
++|+|+|++|++++ |+.|+|||+.++ +++..+ .+|...|++++|+||+++|++++.|++|+|||+...
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999 999999999987 777764 689999999999999999999999999999999643
No 108
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-31 Score=305.09 Aligned_cols=254 Identities=9% Similarity=0.053 Sum_probs=198.7
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEE----EEeccCCCceEEEEEcCC------CCeEEEEeCCCeEEEEecCCCCc----
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY---- 526 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~fspd------g~~Lasgs~Dg~I~IWDl~s~~~---- 526 (732)
++++|++++.|++|+|||+.+++.. ..+..|.+.|.+++|+|+ +.+||+++.||+|+|||+..+..
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~ 251 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV 251 (524)
T ss_dssp ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence 3344455668899999999876542 446678899999999996 57999999999999999986542
Q ss_pred ------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEe-ccCCeeEE--EEeCCC-CEEEEE
Q 004737 527 ------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRILAA 595 (732)
Q Consensus 527 ------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~-~~~~i~~v--~~sp~g-~~ll~~ 595 (732)
+...+.+|...|++++|++++ .|++|+.||+|++||++++. ....+. +...|.++ .|++++ ..|+++
T Consensus 252 ~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 252 FKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred ceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 134678899999999999863 68899999999999999764 334454 45679998 567777 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe
Q 004737 596 AIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 672 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l~~h~~--~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fs 672 (732)
+.|+.|+|||++++++...+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+..|...|++++|+
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGVS 406 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEECC
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEEeC
Confidence 9999999999998876666666543 588999999999999888 889999999987 5666777899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEc-----cCCCCeeEEEEeCCCCEE
Q 004737 673 PTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 673 pdg~~L~sgs~dg~I~IwDl~t~~~~~~~-----~h~~~V~sla~spdg~~L 719 (732)
|++++|++++.|++|++||+..+...... .+...|++++|+|+++.+
T Consensus 407 p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 99999999999999999998664211111 112257899999999855
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=9e-29 Score=269.25 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.1
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 541 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl 541 (732)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 367888899999999999999999988775 48999999999977 5667899999999988663 55555444 89999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 620 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l-l~~s~dg~I~IwDl~t~~~i~~l~~h~~ 620 (732)
+|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999888888888899999999999999999888889999999999988 45666899999999999998888755 5
Q ss_pred CEEEEEEeCCCCEEE-EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 004737 621 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 695 (732)
Q Consensus 621 ~V~sla~spdg~~La-sgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs---~dg~I~IwDl~t~ 695 (732)
.+.+++|+|++++|+ +++ ++.|++||++++ .++..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 445 889999999887 5555554 456789999999999999988 6889999999999
Q ss_pred eEEEEccCCCCeeEEEEeCCCCEE-EEEECCCeEEEeC
Q 004737 696 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 732 (732)
Q Consensus 696 ~~~~~~~h~~~V~sla~spdg~~L-aSgs~DG~I~IWD 732 (732)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 888444444568999999999977 5668899999996
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.3e-28 Score=264.79 Aligned_cols=269 Identities=14% Similarity=0.153 Sum_probs=223.2
Q ss_pred CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737 424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp 502 (732)
..+..+++|+..++.. +..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .|.+++|+|
T Consensus 9 ~~d~~v~v~d~~~~~~---~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~sp 83 (391)
T 1l0q_A 9 SESDNISVIDVTSNKV---TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (391)
T ss_dssp TTTTEEEEEETTTTEE---EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred CCCCEEEEEECCCCeE---EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECC
Confidence 4567889999888754 44556665 49999999999987 666689999999999999998887665 899999999
Q ss_pred CCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737 503 SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 581 (732)
Q Consensus 503 dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~ 581 (732)
++++|++++ .|+.|++||+.+++. +..+.. ...+.+++|+|+++.++++++.++.|++||+.+++++..+..+..+.
T Consensus 84 dg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 161 (391)
T 1l0q_A 84 DGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK 161 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcc
Confidence 999886554 679999999998653 455554 45789999999998887899999999999999999999998888899
Q ss_pred EEEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeE
Q 004737 582 QMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECI 656 (732)
Q Consensus 582 ~v~~sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i 656 (732)
.++|+|+++.++ ++..++.|++||+++++++..+. +...+.+++|+|++++|++++ ++.|++||+.++ +.+
T Consensus 162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~ 237 (391)
T 1l0q_A 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KIT 237 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEE
Confidence 999999999885 45567999999999998887776 567899999999999888775 679999999887 566
Q ss_pred EEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEE-EEccCC
Q 004737 657 HELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 704 (732)
Q Consensus 657 ~~~~~~~~~I~sl~fspdg~~L~-sgs~dg~I~IwDl~t~~~~-~~~~h~ 704 (732)
..+..+ ..+.+++|+|++++++ +++.++.|++||+.+++.+ .+..|.
T Consensus 238 ~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 238 ARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 666654 4578999999999885 4567889999999999877 444443
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=9.2e-30 Score=283.18 Aligned_cols=252 Identities=19% Similarity=0.366 Sum_probs=218.8
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCC----------CeEEEEeccCCCceEEEEEcCCCC-eEEEEe
Q 004737 444 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 511 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs 511 (732)
.....|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ......+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 77999999999999999986 677888899999999999999988 999999
Q ss_pred CCCeEEEEecCCCCce------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEe-ccCCee
Q 004737 512 ADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT 581 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---~~i~~~~-~~~~i~ 581 (732)
.||.|++||+...... ...+.+|...|.+++|+|++..+|++++.|+.|++||++++ +.+..+. +...+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 9999999999874321 35677899999999999977889999999999999999987 4555554 456799
Q ss_pred EEEEeCCCC-EEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCC-----
Q 004737 582 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 652 (732)
Q Consensus 582 ~v~~sp~g~-~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~----- 652 (732)
+++|+|++. .+++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999987 588999999999999998 567788888999999999999985 677777 99999999987321
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 004737 653 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 653 ------~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~ 695 (732)
...+..+..|...|.+++|+|++. +|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777788899999999999999 8999999999999998654
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.4e-29 Score=269.36 Aligned_cols=255 Identities=13% Similarity=0.115 Sum_probs=218.1
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEc-CCCeEEEEecc--CCCceEEEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRF 500 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~-~t~~~~~~l~~--h~~~V~~l~f 500 (732)
.|..+++|+...+........+.+|...|++++|+|+++ +|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 356778888877764444566679999999999999999 9999999999999999 87755 67788 9999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEecCC---------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Cee
Q 004737 501 SPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC 570 (732)
Q Consensus 501 spdg~~Lasgs~Dg~I~IWDl~s---------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~ 570 (732)
+| +.+|++++.|+.|++||+.+ .. .+..+. |...|.+++|+|++ +++++.|+.|++||+++ +..
T Consensus 110 ~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC
T ss_pred CC-CCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc
Confidence 99 99999999999999999986 44 244444 88999999999875 66889999999999988 543
Q ss_pred e---eEEeccCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCC---------CEEEEEEeCCC
Q 004737 571 A---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQGHKN---------QVHSVCWNTSG 631 (732)
Q Consensus 571 i---~~~~~~~~i~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~------~~i~~l~~h~~---------~V~sla~spdg 631 (732)
. ....+...+.+++|+| ++..+++++.||.|++||++.. +....+..|.. .|.+++|+|++
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 2 2223456799999999 9999999999999999999876 77777877765 99999999999
Q ss_pred CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe-EEEEE
Q 004737 632 EYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET-LELWN 691 (732)
Q Consensus 632 ~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~dg~-I~IwD 691 (732)
++|++++ ||.|++||+.++ .++..+..| ...|.+++ |++.+|++++.|+. .+.|.
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999 999999999987 778888888 99999999 99999999999998 44444
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-30 Score=292.35 Aligned_cols=261 Identities=10% Similarity=0.085 Sum_probs=212.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
-...|.+++|+|||+++|+++.|++|+ |...++. +.+|...|.+++|+|+| .++.+.+|+.+... .
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--~ 79 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--L 79 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--S
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce--E
Confidence 456799999999999999999999999 7666544 47999999999999998 46666666544221 1
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-----CeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-----~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
.. ..|...|.+++|+|+|. .|++++.||.|++||... ++..+.++. .+.+++|+|+|.+|++++.||.|++
T Consensus 80 ~~-~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LN-SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp ST-TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred ee-cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 12 24588999999999975 555889999999999654 666555332 4999999999999999999999999
Q ss_pred EECCCCe-------EEEEE----cCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceEEEEE
Q 004737 604 LDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVF 671 (732)
Q Consensus 604 wDl~t~~-------~i~~l----~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~f 671 (732)
||+.++. .+..+ .+|..+|.+++|+|+| +++++.|+.|++||+..........++ ..|...|.+++|
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 9999875 35666 6688899999999999 444444999999999886432234555 367789999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEE--eCCCCEEEEEECCCeEEEeC
Q 004737 672 HPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAA--STVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 672 spdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~--spdg~~LaSgs~DG~I~IWD 732 (732)
+ +..|++++ ++.|++||+.+++...+. +|.+.|..++| +|++..|+++++||+ ++|.
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 9 57788776 699999999999985443 89999999999 999999999999999 9984
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-30 Score=306.34 Aligned_cols=252 Identities=20% Similarity=0.313 Sum_probs=213.8
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEE
Q 004737 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 518 (732)
Q Consensus 443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~I 518 (732)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56777889999999999999988 999999999999999
Q ss_pred EecCCCCc-eeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEEeccCCeeEEEEeC------
Q 004737 519 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP------ 587 (732)
Q Consensus 519 WDl~s~~~-~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i---~~~~~~~~i~~v~~sp------ 587 (732)
||+.++.. ....+.+|...|.+++|+|++ ..++++++.||.|++||++++... ....+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 99998642 456778899999999999983 356779999999999999887332 2223556799999999
Q ss_pred -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEeCC---CCEEEEEe-CCeEEEEECCCCCC
Q 004737 588 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 588 -------~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~V~sla~spd---g~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
++..+++++.||.|++||++++ .+...+.+|...|++++|+|+ +.+|++++ ||.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5889999999999999999876 667788899999999999999 89999999 99999999988632
Q ss_pred c--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 653 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 653 ~--~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
. ..+.....+...|.+++|+|++.++++++.|+.|++||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 1 12233345778899999999999999999999999999874
No 115
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=292.74 Aligned_cols=262 Identities=10% Similarity=0.096 Sum_probs=211.5
Q ss_pred CCceeeeeecCCCceeEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC-----ceEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDV 498 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~-----~V~~l 498 (732)
.++.+.+|+..... .+. .|...|++|+|||||++||+++.||.|+|||.+. .+..+. |.. .|.++
T Consensus 65 ~~~~~~~~~~~~~~------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 65 FENKLDFELAQQNG------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp CCCTTTTSCCCSSC------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE
T ss_pred CcceEEEEeCCCce------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE
Confidence 45555555543222 122 5688999999999999999999999999999654 666677 665 49999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEecCCCCc------eeEEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737 499 RFSPSLSRLATSSADRTVRVWDTENPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568 (732)
Q Consensus 499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~------~~~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~ 568 (732)
+|+|||++||+|+.||+|+|||+.++.. .+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCC
Confidence 9999999999999999999999998653 34565 6788899999999997 557788999999999887
Q ss_pred eee---eEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE--eCCCCEEEEEe-CC
Q 004737 569 SCA---GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DE 640 (732)
Q Consensus 569 ~~i---~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~--spdg~~Lasgs-Dg 640 (732)
... ..+. +...|.+++|+ +..+++++ ++.|++||+.+++......+|...|..++| +|++..|++++ ||
T Consensus 213 ~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG 289 (588)
T 2j04_A 213 SHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS 289 (588)
T ss_dssp SSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred ccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence 742 4453 33579999999 57777776 699999999998875444479999999999 99999999999 88
Q ss_pred eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEE
Q 004737 641 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 720 (732)
Q Consensus 641 ~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~La 720 (732)
+ ++|.+. .+.|+|++..++.. |+.+++|+...+....+ .+...|.+++|+|||..+|
T Consensus 290 ~-klw~~d-------------------~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA 346 (588)
T 2j04_A 290 Y-KVLLED-------------------ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIA 346 (588)
T ss_dssp E-EEEESS-------------------SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEE
T ss_pred C-EEEeec-------------------cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEE
Confidence 9 999976 15699999866664 88999999866653323 3466799999999999999
Q ss_pred EEEC
Q 004737 721 SASH 724 (732)
Q Consensus 721 Sgs~ 724 (732)
+++.
T Consensus 347 ~~~~ 350 (588)
T 2j04_A 347 IVYD 350 (588)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9873
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3e-28 Score=257.00 Aligned_cols=274 Identities=18% Similarity=0.206 Sum_probs=198.1
Q ss_pred CCceeeeeecCCCc-eeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCCC---------eEEEEeccCC
Q 004737 425 RDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHT 492 (732)
Q Consensus 425 ~d~~~r~wd~~~g~-~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~---------~~~~~l~~h~ 492 (732)
.|..+++|+..++. .+..+..+.+|...|++++|+| |+++|++|+.|+.|+|||+.++ +.+..+..|.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 35677888877643 3356677899999999999999 6999999999999999999887 6678888999
Q ss_pred CceEEEEEcCC--CCeEEEEeCCCeEEEEecCCCCceeE------------EeecCCcceEEEEEcCC--CCcEEEEEeC
Q 004737 493 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR------------TFTGHSTTVMSLDFHPS--KEDLLCSCDN 556 (732)
Q Consensus 493 ~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~~~------------~l~~h~~~V~sl~fspd--g~~llaSgs~ 556 (732)
..|.+++|+|+ +.+|++++.||.|++||+.+...... ....|...+.+++|+|+ ...++++++.
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 190 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL 190 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence 99999999999 99999999999999999987653211 01267889999999997 3567778999
Q ss_pred CCcEEEEECCCCee--eeEEe-ccCCeeEEEEeCCC----CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 557 NSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 557 Dg~I~iWDl~t~~~--i~~~~-~~~~i~~v~~sp~g----~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
++.+.+|+...++. +..+. +...|.+++|+|++ ..|++++.||.|++||++.+........+...+....+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
T 3f3f_A 191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSA 270 (351)
T ss_dssp TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCc
Confidence 99998888887765 33443 34679999999998 7899999999999999998766555544444555555555
Q ss_pred CCCEEEEEe-C-CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 630 SGEYLASVS-D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 630 dg~~Lasgs-D-g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
...++..+. + .....+.+........+..+..|...|++++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 271 DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp --------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred ccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 555555544 2 22333333222333778888899999999999999999999999999999999987544
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.4e-28 Score=257.81 Aligned_cols=262 Identities=16% Similarity=0.223 Sum_probs=213.7
Q ss_pred CceeeeeecCC-CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE--cC
Q 004737 426 DRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SP 502 (732)
Q Consensus 426 d~~~r~wd~~~-g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f--sp 502 (732)
|..+++|+..+ +.. ....+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+. +..|...|++++| ++
T Consensus 63 dg~i~iw~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 63 ANDVRCWEVQDSGQT--IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp TSEEEEEEECTTSCE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS
T ss_pred CCcEEEEEcCCCCce--eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC
Confidence 56678888876 432 235678899999999999999999999999999999999988776 4569999999999 89
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCC
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSG 579 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~ 579 (732)
++.+|++++.|+.|++||++++. .+..+..+. .+.++.+.+. .+++++.++.+++||++......... ....
T Consensus 140 ~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 214 (368)
T 3mmy_A 140 NYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQ 214 (368)
T ss_dssp SCEEEEEEETTSEEEEECSSCSS-CSEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSC
T ss_pred CCCEEEEccCCCcEEEEECCCCc-EEEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCC
Confidence 99999999999999999999876 466666554 6777777743 55577779999999998765443322 2234
Q ss_pred eeEEEEeCCCCE----EEEEEcCCeEEEEECCCC---eEEEEEcCCCC------------CEEEEEEeCCCCEEEEEe-C
Q 004737 580 ATQMRFQPRLGR----ILAAAIENYISILDVETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-D 639 (732)
Q Consensus 580 i~~v~~sp~g~~----ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~------------~V~sla~spdg~~Lasgs-D 639 (732)
..++.+.++... +++++.|+.|++||++.. ..+..+..|.. .|.+++|+|++++|++++ |
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 294 (368)
T 3mmy_A 215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD 294 (368)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC
Confidence 666666665544 999999999999999987 55667777765 799999999999999999 9
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe---EEEEECCCCeEE
Q 004737 640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET---LELWNMTENKTL 698 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~---I~IwDl~t~~~~ 698 (732)
|.|++||+.++ .++..+..|...|.+++|+|++.+|++++.|+. +.+|+.+....+
T Consensus 295 g~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 295 GRFSFWDKDAR---TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp SCEEEEETTTT---EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred CeEEEEECCCC---cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence 99999999987 788889999999999999999999999999884 444555554444
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.7e-29 Score=273.78 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=178.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-----EeccCCCceEEEEEcC--------CCCeEEEEeC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSA 512 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~V~~l~fsp--------dg~~Lasgs~ 512 (732)
...|...+....+++++.+||+++.|++|+|||+.+++... .+.+|.+.|++|+|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666777777888899999999999999999886543 3578999999999997 7899999999
Q ss_pred CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCE
Q 004737 513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGR 591 (732)
Q Consensus 513 Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ 591 (732)
|++|+|||+.+.. .+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.......... ....
T Consensus 165 D~tv~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~-------- 235 (393)
T 4gq1_A 165 DCTLIIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW-------- 235 (393)
T ss_dssp TSEEEEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC--------
T ss_pred CCeEEEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce--------
Confidence 9999999998765 46667778899999999999888899999999999999998876554432111 1000
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce---
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--- 666 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s-pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I--- 666 (732)
.+. ++...........+|...|.++.|+ ++++.|++++ |+.+++||+..... ...+..+...+
T Consensus 236 ~~s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 236 LLT---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPK 303 (393)
T ss_dssp SEE---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------
T ss_pred EEe---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccE
Confidence 011 1111111122334688899999997 7999999999 99999999987632 22222222222
Q ss_pred ---------------EEEEEeC--CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 667 ---------------HSCVFHP--TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 667 ---------------~sl~fsp--dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
..+.|+| ++.++++++.|+.|++||+.+++.. ....|...|.+++|+|||++||++++||.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 2233433 2335566677999999999988766 667899999999999999999999988853
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-29 Score=296.78 Aligned_cols=247 Identities=21% Similarity=0.370 Sum_probs=210.8
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEE
Q 004737 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYW 563 (732)
Q Consensus 486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iW 563 (732)
..+.+|.+.|++++|+|++++|++|+.||+|+|||+..+. .....+.+|...|++++|+++. ..++++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998432 3466788999999999999872 4677799999999999
Q ss_pred ECCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeC-------
Q 004737 564 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------- 629 (732)
Q Consensus 564 Dl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~sp------- 629 (732)
|+.+++ .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 444444 4567999999999 999999999999999999887 34456678999999999999
Q ss_pred ------CCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCe--
Q 004737 630 ------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK-- 696 (732)
Q Consensus 630 ------dg~~Lasgs-Dg~I~IWDl~t~~~~-~~i~~~~~~~~~I~sl~fspd---g~~L~sgs~dg~I~IwDl~t~~-- 696 (732)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 588999988 999999999876432 556678889999999999999 8999999999999999998873
Q ss_pred ----EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 697 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 697 ----~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
......|...|++++|+|++.+|++++.||.|+|||
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 223446889999999999999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.7e-27 Score=262.49 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=203.3
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcC--CCeEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 446 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~--t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
..+|.+.|++++|+|++++| ++++.|+.|+|||+. +++.+..+. .|...|++++|+|++++|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34677899999999999996 899999999999999 888888776 5778999999999999999999999999999
Q ss_pred cCCCCc---eeEEeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEE
Q 004737 521 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 593 (732)
Q Consensus 521 l~s~~~---~~~~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll 593 (732)
+.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987653 22367889999999999998 24677799999999999999998887643 55679999999 999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcC-------------------------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEE
Q 004737 594 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS 646 (732)
Q Consensus 594 ~~s~dg~I~IwDl~t~~~i~~l~~-------------------------h~~~V~sla~spdg~~Lasgs--Dg~I~IWD 646 (732)
+++.|+.|++||+++++++..+.. ....|.+++|+|++++|++++ |+.|+||+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998887762 245799999999999999887 78999999
Q ss_pred C--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 004737 647 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 693 (732)
Q Consensus 647 l--~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-------dg~I~IwDl~ 693 (732)
+ ........+..+..+ ..|.+++|+|++ .+++++. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 9 444444666677776 889999999964 4444433 3457777653
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2e-27 Score=257.85 Aligned_cols=245 Identities=9% Similarity=0.027 Sum_probs=188.1
Q ss_pred EEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe
Q 004737 476 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 555 (732)
Q Consensus 476 VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs 555 (732)
||++.+.+.+..+..|...|++++|+||+++|++|+.|+ ++|||+..... ... .+...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMS--QEMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEE--EECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eee--eecCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998765 78999886542 222 22235888899988777777888
Q ss_pred CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737 556 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 634 (732)
Q Consensus 556 ~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~L 634 (732)
.|+.|++||+.+++++..+.+...+.+++|+++ .+ +...++.|++||+.+. +.+..+.. +...+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998889999999886 33 3346899999999987 55554443 445566777 666
Q ss_pred EEE--e-CCeEEEEECCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeE
Q 004737 635 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 697 (732)
Q Consensus 635 asg--s-Dg~I~IWDl~t~~~~------------~-~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~-I~IwDl~t~~~ 697 (732)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 899999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-EEc-c-CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 698 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 698 ~-~~~-~-h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+ .+. + |...|.+++|+|++++|++++.|+.|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 8 555 4 999999999999999999999999999996
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=6.1e-26 Score=250.29 Aligned_cols=263 Identities=11% Similarity=0.121 Sum_probs=220.7
Q ss_pred CCceeeeeecCCCceeEEEE--EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQ--LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~--~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp 502 (732)
.+..+++|+..++.....+. .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 221 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP 221 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET
T ss_pred CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC
Confidence 35668899988876543222 4568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-------CCCcEEEEECCCCeeeeEE
Q 004737 503 SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-------NNSEIRYWSINNGSCAGVF 574 (732)
Q Consensus 503 dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-------~Dg~I~iWDl~t~~~i~~~ 574 (732)
+++++++++ .|+.|++||+.++. .+..+.. ...+.+++|+|++..+++++. .|+.|++||+.+++.+..+
T Consensus 222 ~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~ 299 (433)
T 3bws_A 222 IRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI 299 (433)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence 999886554 79999999998765 3555554 456999999999876665443 5889999999999988888
Q ss_pred eccCCeeEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-------------
Q 004737 575 KCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------- 639 (732)
Q Consensus 575 ~~~~~i~~v~~sp~g~~ll~~-s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D------------- 639 (732)
.+...+..++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ +
T Consensus 300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 777789999999999876555 678999999999998888776 778899999999999888877 2
Q ss_pred --CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 004737 640 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 694 (732)
Q Consensus 640 --g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t 694 (732)
|.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. ++.|++|++..
T Consensus 379 ~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 49999999887 56666654 567899999999999998886 99999999864
No 123
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=8.3e-26 Score=259.78 Aligned_cols=300 Identities=10% Similarity=0.060 Sum_probs=242.0
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc--CCCeEEEEeccCCCceEEEEEcC-
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSP- 502 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~--~t~~~~~~l~~h~~~V~~l~fsp- 502 (732)
+..+.+||..++.. +.++..+.. +.+++|+|||++|++++.|+.|.+||+ .+++.+.++. +...+..++|+|
T Consensus 158 d~~V~v~D~~t~~~---~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~ 232 (543)
T 1nir_A 158 AGQIALVDGDSKKI---VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKF 232 (543)
T ss_dssp GTEEEEEETTTCCE---EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCS
T ss_pred CCeEEEEECCCceE---EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCC
Confidence 45667788777754 344553333 999999999999999999999999999 8999988887 455689999999
Q ss_pred ---CCCeEEEEeC-CCeEEEEecCCCCceeEEeec----------CC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 503 ---SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 503 ---dg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~----------h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
||++|++++. +++|.|||..+.+. +..+.. |. ..+..+.++|++..++++...++.|.+||+.+
T Consensus 233 ~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 233 KGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp TTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred cCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999885 89999999988763 555443 22 37899999999999999999999999999988
Q ss_pred Ceeee--EEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEEEeCC-CCEEEEEe-
Q 004737 568 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVCWNTS-GEYLASVS- 638 (732)
Q Consensus 568 ~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~----h~~~V~sla~spd-g~~Lasgs- 638 (732)
.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+.. |.+....+ ++|+ +.+++++.
T Consensus 312 ~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 312 IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 76554 4455556888999999998887765 78999999999999888774 55444443 4677 66677765
Q ss_pred -CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE-------cCCeEEEEECCCCeEE-EE-----
Q 004737 639 -DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG-------CYETLELWNMTENKTL-TL----- 700 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-------~dg~I~IwDl~t~~~~-~~----- 700 (732)
|++|.+||+.+... .+++.++..+...+..+.|+|++++|++.. .+++|.|||+.+++.. ..
T Consensus 391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~ 470 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 470 (543)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence 78999999987322 488999999988889999999999999987 2669999999988755 32
Q ss_pred ----ccCCCCeeEEEEeCCCCEEEEEE-----CCCeEEEeC
Q 004737 701 ----SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 732 (732)
Q Consensus 701 ----~~h~~~V~sla~spdg~~LaSgs-----~DG~I~IWD 732 (732)
..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 471 ~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 471 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred hcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 35678899999999999888763 479999997
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.9e-26 Score=244.90 Aligned_cols=260 Identities=13% Similarity=0.059 Sum_probs=193.3
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC-
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS- 503 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd- 503 (732)
.+..+++|+..++..++.+.++..|..+|..+.|.||-.-|++..- | .-+...|..++|+||
T Consensus 61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~----------------~~~~~~v~sla~spd~ 123 (356)
T 2w18_A 61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-G----------------NLEIREIRALFCSSDD 123 (356)
T ss_dssp ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-C----------------SSSEEEEEEECC----
T ss_pred ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-c----------------cccccceEEEEECCCc
Confidence 3567899999999999999999999999999999998654443221 0 124567999999999
Q ss_pred ---CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe--CCCcEEEEECC-CCeeeeEEe-c
Q 004737 504 ---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN-NGSCAGVFK-C 576 (732)
Q Consensus 504 ---g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~-t~~~i~~~~-~ 576 (732)
+.++++++.+ ++||++.++ .++.++. .|+.|++|++. +++.+..+. +
T Consensus 124 ~~~~~~l~s~g~~--~~v~~l~~g------------------------~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 124 ESEKQVLLKSGNI--KAVLGLTKR------------------------RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp --CCEEEEEEEEE--EEEEEETTT------------------------EEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred cccccEEEeCCCe--EEEEecCCC------------------------cEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 8899998744 778866432 2333322 35566666662 344444443 3
Q ss_pred cCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEeCCCCEE------------EEEe
Q 004737 577 QSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS 638 (732)
Q Consensus 577 ~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~V~sla~spdg~~L------------asgs 638 (732)
...+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 35578888888 77999999999999999999999999998754 367788999999887 4456
Q ss_pred -CCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCee-EE
Q 004737 639 -DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SL 710 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~-----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~-sl 710 (732)
|++|++||..++ +++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++ ++.+|...+. .+
T Consensus 258 ~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred CCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 889999999887 555443 2444445444444 778999999999999999999988 6778877655 68
Q ss_pred EEeCCCCEEEEEECCCeEEEeC
Q 004737 711 AASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 711 a~spdg~~LaSgs~DG~I~IWD 732 (732)
+|+||+++|++|+.|++|+|||
T Consensus 333 afSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEec
Confidence 9999999999999999999997
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=3.6e-26 Score=253.74 Aligned_cols=283 Identities=12% Similarity=0.075 Sum_probs=230.3
Q ss_pred CCceeeeeec--CCCceeEEEEEecCCCCCeEEEEEcC--------------CCCEEEEEECC------CcEEEEEcCCC
Q 004737 425 RDRVGRSAEV--GKGFTFTEFQLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESF 482 (732)
Q Consensus 425 ~d~~~r~wd~--~~g~~~~~v~~l~~H~~~V~~lafSp--------------dg~~Lasgs~D------g~I~VWd~~t~ 482 (732)
.+..+++||+ .++..+. -..+.+|...|.++++++ .+..++.++.+ +.|++||++.
T Consensus 91 ~~~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g- 168 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLA-QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG- 168 (415)
T ss_dssp EEEEEEEEECSSSTTCEEE-EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-
T ss_pred EEEEEEEEeCCCCCCCEEe-eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-
Confidence 4557899999 8886432 245788999898888875 15566666554 7999999975
Q ss_pred eEEEEeccCCCceEEEEEcCCCCeEEEEeCCC---eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 559 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~ 559 (732)
.....+..|...|.+++|+|||++|++++.|+ .|++||+.+++. ..+..|...+.+++|+|++..++++++.++.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 45667778999999999999999999999885 999999998763 4567788899999999999888878876655
Q ss_pred --EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737 560 --IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 634 (732)
Q Consensus 560 --I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~L 634 (732)
|++||+.++++.....+...+.+++|+|++.+|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|
T Consensus 247 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 247 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence 999999988875555555678999999999999988864 4 788889988764 3455577789999999999999
Q ss_pred EEEe-C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCe
Q 004737 635 ASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLV 707 (732)
Q Consensus 635 asgs-D---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~~~h~~~V 707 (732)
++++ + ..|++||+.++. + ..+..+. .+.+++|+|++++|++++.++ .|++||+..+....+..|.+.|
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 400 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred EEEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCC
Confidence 9887 4 389999998863 3 3344443 899999999999999998877 7999999988888889999999
Q ss_pred eEEEEeCCCC
Q 004737 708 SSLAASTVNG 717 (732)
Q Consensus 708 ~sla~spdg~ 717 (732)
.+++|+|...
T Consensus 401 ~~~~~~~~~~ 410 (415)
T 2hqs_A 401 KFPAWSPYLH 410 (415)
T ss_dssp EEEEECCCCC
T ss_pred cCCccccccc
Confidence 9999999754
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.9e-26 Score=246.53 Aligned_cols=254 Identities=11% Similarity=0.106 Sum_probs=197.6
Q ss_pred CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC---------CCeEEEEec-cCC
Q 004737 423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVKSTLE-EHT 492 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~---------t~~~~~~l~-~h~ 492 (732)
.+.|..+++|+..++.....+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+. .|.
T Consensus 54 g~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (343)
T 3lrv_A 54 RCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA 125 (343)
T ss_dssp EEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred ECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence 3457788889988886655544 466888999988 9999999999999665 555444443 677
Q ss_pred CceEEEEEcC--CCCeEEEEeCCCeEEEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004737 493 QWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569 (732)
Q Consensus 493 ~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~ 569 (732)
+.|.+++|+| ++++|++++.||+|++||++++.. ...+ ..|...|.+++|+|++ .+|++|+.||.|++||+++++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTT
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCC
Confidence 8999999999 999999999999999999998775 4444 4456689999999996 677799999999999999998
Q ss_pred ee-eEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEE--EEEEeCCCCEEEEEe--C
Q 004737 570 CA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVH--SVCWNTSGEYLASVS--D 639 (732)
Q Consensus 570 ~i-~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~V~--sla~spdg~~Lasgs--D 639 (732)
.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |...+. +++|+|++++|++++ |
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d 282 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence 77 66654 67799999999999999999 55999999998866544433 333443 699999999999976 8
Q ss_pred CeEEEEECCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC
Q 004737 640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp---dg~~L~sgs~dg~I~IwDl~t 694 (732)
+.|+||++...... ... .++..+.|.+ +...+++++.|+.+.++-...
T Consensus 283 ~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 283 NSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TEEEEEEECTTTCS--EEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred CcEEEEEEcccccc--eEe-----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 89999999765321 111 4567788888 888999999999888875443
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=2.7e-25 Score=246.66 Aligned_cols=273 Identities=15% Similarity=0.170 Sum_probs=219.1
Q ss_pred CCeEEEEEcCCCC-EEEEEE----CCC----cEEEEEc--CCCeEE--EEeccCCCceEEEEEcC--------------C
Q 004737 451 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 503 (732)
Q Consensus 451 ~~V~~lafSpdg~-~Lasgs----~Dg----~I~VWd~--~t~~~~--~~l~~h~~~V~~l~fsp--------------d 503 (732)
..|...+|.+.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888888775 566776 467 8999999 888877 45888888888877764 1
Q ss_pred CCeEEEEeCC------CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEE
Q 004737 504 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF 574 (732)
Q Consensus 504 g~~Lasgs~D------g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~~~i~~~ 574 (732)
+..+++++.+ +.|++||++.. ..+.+.+|...|.+++|+|++..++ +++.+ ..|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5666666654 79999999853 3577788999999999999987665 55545 49999999999887666
Q ss_pred eccCCeeEEEEeCCCCEEEEE-EcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEEC
Q 004737 575 KCQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 647 (732)
Q Consensus 575 ~~~~~i~~v~~sp~g~~ll~~-s~dg--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl 647 (732)
.+...+.+++|+|++..|++. +.++ .|++||+++++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 566779999999999988854 4454 599999998876 56777888999999999999998877 34 6888898
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737 648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~ 724 (732)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|++++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8763 23344566788999999999999988875 48999999999887776665 8999999999999999887
Q ss_pred CC---eEEEeC
Q 004737 725 DK---CVKIWK 732 (732)
Q Consensus 725 DG---~I~IWD 732 (732)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 788885
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1e-25 Score=247.89 Aligned_cols=225 Identities=11% Similarity=0.093 Sum_probs=172.1
Q ss_pred CCCCceeeeeecCCCcee--EEEEEecCCCCCeEEEEEcC--------CCCEEEEEECCCcEEEEEcCCCeEEEEeccCC
Q 004737 423 DPRDRVGRSAEVGKGFTF--TEFQLIPASTSKVESCHFSP--------DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 492 (732)
Q Consensus 423 ~~~d~~~r~wd~~~g~~~--~~v~~l~~H~~~V~~lafSp--------dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~ 492 (732)
.+.|..+|+|+...+... ..+..+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++..+..+..|.
T Consensus 107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~ 186 (393)
T 4gq1_A 107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS 186 (393)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS
T ss_pred EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC
Confidence 445788999998887543 34556899999999999998 89999999999999999999988888888899
Q ss_pred CceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeE------------------------EeecCCcceEEEEEc-CC
Q 004737 493 QWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLR------------------------TFTGHSTTVMSLDFH-PS 546 (732)
Q Consensus 493 ~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~------------------------~l~~h~~~V~sl~fs-pd 546 (732)
..|.+++|+|++ .+|++++.|++|++||+.++..... ...+|...|.++.|+ ++
T Consensus 187 ~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 187 SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence 999999999987 4899999999999999987643211 124678889999998 56
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEecc-------------------CCeeEEEEeC-CCCE-EEEEEcCCeEEEEE
Q 004737 547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQP-RLGR-ILAAAIENYISILD 605 (732)
Q Consensus 547 g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-------------------~~i~~v~~sp-~g~~-ll~~s~dg~I~IwD 605 (732)
+ ..+++++.|+.+++||+..+.....+..+ .......|.+ .++. +++++.||.|++||
T Consensus 267 g-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd 345 (393)
T 4gq1_A 267 G-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN 345 (393)
T ss_dssp T-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred C-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence 4 56679999999999999877655443311 1122233443 3344 44566799999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECC
Q 004737 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 648 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~ 648 (732)
+.++.+...+..|..+|.+++|+|||++|++++++.+.+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 9999888888889999999999999999999998778888764
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=2.5e-23 Score=222.11 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=216.8
Q ss_pred CCeEEEEEcCCCCEEEEEEC-------CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecC
Q 004737 451 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 522 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~ 522 (732)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 568999999999988888643 447889999999966555 557999999999
Q ss_pred CCCceeEEeecCCc---------ceEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCE
Q 004737 523 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 591 (732)
Q Consensus 523 s~~~~~~~l~~h~~---------~V~sl~fspdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ 591 (732)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444544332 278899999988777666 458899999999999988887 4455889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 665 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~ 665 (732)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+++++++++ ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877664 456788999999999887776 589999999887 4454444332
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 666 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 666 I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
...++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|++++|+.+..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999877777 5789999999999988555555688999999999977776655
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.4e-23 Score=222.70 Aligned_cols=274 Identities=7% Similarity=0.133 Sum_probs=207.2
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC-CCeEEEEecCCCCceeEEeec
Q 004737 456 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 533 (732)
Q Consensus 456 lafSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~ 533 (732)
..|.+++.+ +++++.++.|.+||..+++.+..+..+...+ +++|+|+++++++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665555 6777789999999999999988887777777 9999999997776665 899999999987753566666
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCe-EEEEECCC
Q 004737 534 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 608 (732)
Q Consensus 534 h~~~V~sl~fspdg~~llaSgs~D-g--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~-I~IwDl~t 608 (732)
+..++.+++|+|+++.++ ++..+ + .|++||+.+++.+..+........++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999987766 54444 3 899999999999988888788899999999987766654 478 99999875
Q ss_pred CeEE----EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737 609 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 609 ~~~i----~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs 682 (732)
...+ .........+.+++|+|+|+++++++ ++.|++||+.++.....+..+.. ...+..++|+|++++++++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 4322 12223455689999999999776665 78999999988744222555553 46678899999999887776
Q ss_pred c-CCeEEEEECCCCeEE---EEccC----CC---CeeEEEEeCCCCEEEEEEC-CCeEEEeC
Q 004737 683 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK 732 (732)
Q Consensus 683 ~-dg~I~IwDl~t~~~~---~~~~h----~~---~V~sla~spdg~~LaSgs~-DG~I~IWD 732 (732)
. ++.|.+||+.+++.. .+..+ .. .+..++|+|++++|++++. ++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 568999999998873 11111 22 2356899999998876664 66999996
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=2e-23 Score=221.25 Aligned_cols=266 Identities=9% Similarity=0.133 Sum_probs=197.0
Q ss_pred EEEEEECCCcEEEEEcC-CC--eEEEEeccCCCceEEEEEcCCCCeEEEEeCC-CeEEEEecC--CCCce-eEEeecCCc
Q 004737 464 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 536 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~~-t~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~I~IWDl~--s~~~~-~~~l~~h~~ 536 (732)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|+++ ++... +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999995 33 333333 477789999999999999998887 999999998 44432 23344333
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC-CeE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 611 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl---~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t-~~~ 611 (732)
.+.+++|+|++..+++++..++.|++||+ ...+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 78999999999878777777899999999 4445555565666789999999999998888 789999999987 644
Q ss_pred EE----EEcC-CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 004737 612 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 677 (732)
Q Consensus 612 i~----~l~~-h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~-~~~~i~~~~---~~---~~~I~sl~fspdg~~ 677 (732)
.. .+.. ....+.+++|+|++++|++++ ++.|.+||+.... ......... .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776655 7899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEECC--CC--eEE-EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737 678 LLVIG-CYETLELWNMT--EN--KTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 732 (732)
Q Consensus 678 L~sgs-~dg~I~IwDl~--t~--~~~-~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD 732 (732)
|+++. .++.|++||+. ++ +.+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 33 333 333333 489999999999888888 689999994
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.2e-23 Score=224.68 Aligned_cols=218 Identities=11% Similarity=0.096 Sum_probs=164.2
Q ss_pred cCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 447 PASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 447 ~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
.-|.+.|++++|+|| +.++++++. .+.||++.+++.+.. ..+ .|+.|++|++
T Consensus 108 ~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g---------------------~d~~V~~~~~ 164 (356)
T 2w18_A 108 NLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTL---------------------SDQQVEVMTF 164 (356)
T ss_dssp SSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSS---------------------TTCEEEEEEE
T ss_pred cccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccC---------------------CCCcEEEEEE
Confidence 446678999999999 889999884 477886544443333 122 3666666666
Q ss_pred CCCCceeEEeecCCcceEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----CCeeEEEEeCCCCEE---
Q 004737 522 ENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRI--- 592 (732)
Q Consensus 522 ~s~~~~~~~l~~h~~~V~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----~~i~~v~~sp~g~~l--- 592 (732)
......+..+.+|...+..++|++ +...+|++++.|++|+|||++++++++++..+ ..+.+++|+|++..+
T Consensus 165 s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 165 AEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp CTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEE
T ss_pred CCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEe
Confidence 443334556678888899999988 23578889999999999999999999999742 246778999998876
Q ss_pred ---------EEEEcCCeEEEEECCCCeEEEEE-----cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 593 ---------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 593 ---------l~~s~dg~I~IwDl~t~~~i~~l-----~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
++++.|++|++||..+++.+..+ .+|...+.+.+++ +.++++++ |++|+|||+.++ +++.
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG---k~l~ 319 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG---QCTA 319 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC---SEEE
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC---cEEE
Confidence 45677899999999999887765 3676666555554 88899998 999999999998 7888
Q ss_pred EeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 658 ELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 658 ~~~~~~~~I~-sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
++.+|...+. .++|+|++++|++++.|++|+|||+
T Consensus 320 tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 320 LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9988876655 5899999999999999999999995
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.2e-23 Score=241.91 Aligned_cols=268 Identities=9% Similarity=0.063 Sum_probs=215.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec--CCCCceeEEeecC
Q 004737 457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 534 (732)
Q Consensus 457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl--~s~~~~~~~l~~h 534 (732)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.+ .+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence 3789999999999999999999999999999974433 899999999999999999999999999 6654 355555 4
Q ss_pred CcceEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------------CCeeEEEEeCCCCEEEEEE-c
Q 004737 535 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 597 (732)
Q Consensus 535 ~~~V~sl~fsp----dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~ll~~s-~ 597 (732)
...+..++|+| +++.+++++..++.|.+||..+++++..+... ..+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 55689999999 98877766667999999999999998887642 2578899999887766554 5
Q ss_pred CCeEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec----CCCceEEE
Q 004737 598 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 669 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl 669 (732)
++.|.+||+.+.+.+. .+. +...+.+++|+|++++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7899999998764332 443 566788999999999887765 789999999987 66666553 43333333
Q ss_pred EEeCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EEccCCCCeeEEEEeCCCCEEEEEE-------CCCeEEEeC
Q 004737 670 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 732 (732)
Q Consensus 670 ~fspdg~~L~sgs--~dg~I~IwDl~t-------~~~~-~~~~h~~~V~sla~spdg~~LaSgs-------~DG~I~IWD 732 (732)
++|++..+++.+ .+++|.+||+.+ .+++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578744444444 478999999988 7777 7778888899999999999999987 277999997
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=9.1e-24 Score=250.13 Aligned_cols=276 Identities=14% Similarity=0.092 Sum_probs=212.8
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC-----cEEEEEcCCCeEEEEeccCCC------------------------ceEEEE
Q 004737 450 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 499 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~-Dg-----~I~VWd~~t~~~~~~l~~h~~------------------------~V~~l~ 499 (732)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 446999999999999999998 88 899999999988777765433 388999
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737 500 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~ 578 (732)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.+++ ++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999986 899999999761 014556778888999999999876664 44 5689999999887765544322
Q ss_pred C-----------------eeEEEEeCCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 004737 579 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 608 (732)
Q Consensus 579 ~-----------------i~~v~~sp~g~~ll~~s~dg---------------------------------~I~IwDl~t 608 (732)
. +..+.|+|++++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47799999999999988765 889999998
Q ss_pred -CeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe------CCeEEEEECCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 004737 609 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 675 (732)
Q Consensus 609 -~~~i~~l~--~h~~~V~sla~spdg~~Lasgs------Dg~I~IWDl~t~~~~~~i~~~~~~~~----~I~sl~fspdg 675 (732)
++...... .|...+.+++| |||++|++++ +..|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 77654433 37778999999 9999988765 2479999999874 3333333322 34678999999
Q ss_pred CEEEEEEcCCeEEEEECC-CCeEEEEccCCCCeeEE-EEeCCCCEEEEE-ECCC--eEEEeC
Q 004737 676 PSLLVIGCYETLELWNMT-ENKTLTLSAHDKLVSSL-AASTVNGMVASA-SHDK--CVKIWK 732 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~-t~~~~~~~~h~~~V~sl-a~spdg~~LaSg-s~DG--~I~IWD 732 (732)
+++++++.++.+.||.+. ++....+..|...|..+ .|+|+++.|+.. +.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 988888888866666543 23355677888888887 599999977654 4455 888984
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.4e-22 Score=214.68 Aligned_cols=289 Identities=11% Similarity=0.074 Sum_probs=205.0
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcC--CCe--EEEEeccCCCceEEEE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE--SFT--VKSTLEEHTQWITDVR 499 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWd~~--t~~--~~~~l~~h~~~V~~l~ 499 (732)
.+..+++|+.........+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 3567788887533333334333 477789999999999999988886 999999997 554 344555444 789999
Q ss_pred EcCCCCeEEEEeC-CCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE--
Q 004737 500 FSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV-- 573 (732)
Q Consensus 500 fspdg~~Lasgs~-Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~-- 573 (732)
|+|++++|++++. ++.|.+||+..+. .....+. ....+.+++|+|+++.+++++..++.|++||+.+ ++....
T Consensus 91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 9999998877765 8899999995221 1233333 3346899999999887776665899999999987 654322
Q ss_pred --Ee--ccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEc---CC---CCCEEEEEEeCCCCEEEEEe
Q 004737 574 --FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQ---GH---KNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 574 --~~--~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~---~h---~~~V~sla~spdg~~Lasgs 638 (732)
+. ....+..++|+|++.++++++ .++.|.+||+.. ++. ...+. .. ...+.+++|+|++++|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 22 234678899999999887776 689999999953 322 22222 11 24677899999999887554
Q ss_pred --CCeEEEEECCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCeEE--EEccCCCCeeEE
Q 004737 639 --DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTL--TLSAHDKLVSSL 710 (732)
Q Consensus 639 --Dg~I~IWDl~t~-~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~Iw--Dl~t~~~~--~~~~h~~~V~sl 710 (732)
++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+| |..+++.. ..........++
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i 328 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV 328 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeE
Confidence 789999999842 12244555554444 88999999999998888 57899999 55566544 222233567788
Q ss_pred EEeCCCC
Q 004737 711 AASTVNG 717 (732)
Q Consensus 711 a~spdg~ 717 (732)
+|.++.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 8887654
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.3e-23 Score=216.60 Aligned_cols=257 Identities=13% Similarity=0.089 Sum_probs=200.8
Q ss_pred CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEeccC-CCceEEEE
Q 004737 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVR 499 (732)
Q Consensus 422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h-~~~V~~l~ 499 (732)
..+.+..+++|+..++.. ..+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCce----eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 456788899999888753 34556889999999999999999987 78999999999 8877766666 37789999
Q ss_pred EcCCCCeEEEEe--CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEEe
Q 004737 500 FSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK 575 (732)
Q Consensus 500 fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl--~t~~~i~~~~ 575 (732)
|+|++++|++++ .++.+.||.++........+..+. .+.+++|+|++..+++++..++.+++|++ .+++......
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999999998 335555655543222244444443 48999999999888878888999999985 4455544444
Q ss_pred ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECC-CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-----------Ce
Q 004737 576 CQSGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------EL 641 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~-t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-----------g~ 641 (732)
....+.+++|+|++..+++++. ++.+.+|++. .+.....+..|...+.+++|+|++++|++++ + +.
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 5567899999999998887774 8889999886 4555667777888899999999999998877 4 46
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004737 642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 685 (732)
Q Consensus 642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg 685 (732)
|++||+.++.. ..+..+..+...+..++|+|++++|++++.+.
T Consensus 251 l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999987643 34555556788899999999999998887764
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.8e-23 Score=214.10 Aligned_cols=253 Identities=11% Similarity=0.090 Sum_probs=195.4
Q ss_pred EEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-CCceeEEeecC-CcceEEEEEc
Q 004737 467 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH 544 (732)
Q Consensus 467 sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-~~~~~~~l~~h-~~~V~sl~fs 544 (732)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...+.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 34578999999999988764 445888999999999999999986 88999999998 653 4444455 4678999999
Q ss_pred CCCCcEEEEEe-CC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEE-EEEcCCeEEEEECC--CCeEEEEEcCC
Q 004737 545 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVE--TQVCRLKLQGH 618 (732)
Q Consensus 545 pdg~~llaSgs-~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll-~~s~dg~I~IwDl~--t~~~i~~l~~h 618 (732)
|++..+++++. .+ ..|.+|++.++. ...+.....+..++|+|++..++ ++..++.+.+|+++ ++. ...+..+
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 171 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG 171 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence 99876665442 23 445555555554 34444555688899999999887 67788988888853 343 4556668
Q ss_pred CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------C
Q 004737 619 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------E 685 (732)
Q Consensus 619 ~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----------g 685 (732)
...+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ .
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 88999999999999887665 7889999886321 3455666677788999999999999988876 4
Q ss_pred eEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737 686 TLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 686 ~I~IwDl~t~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG 726 (732)
.|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6999999988654 3447888999999999999998887654
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=1e-22 Score=215.33 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=206.7
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCC--ceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEee-cC----
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 534 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~--~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~-~h---- 534 (732)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ ++..++.|.+||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999999888763322 488999999998765 555678999999998764 33333 22
Q ss_pred CcceEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 535 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 535 ~~~V~sl~fspdg~~llaSgs-----------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
...+.+++|+|+++.++++.. .++.|++||+.+++.+..+.....+..++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226788999999877665531 4799999999999988888776778899999999988887 789999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC-----------------------eEEEEECCCCCCceeEEE
Q 004737 604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg-----------------------~I~IWDl~t~~~~~~i~~ 658 (732)
||+.+++.+..+..+.. ...+.|+|++.+++... ++ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11337899988766554 22 4689999887432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+..+...+..++|+|++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566678899999999998888 6899999999998875544556789999999999999999999999996
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5.3e-22 Score=210.59 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=208.0
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeE-EEEeccCCCceEEEEEcC
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP 502 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~-~~~l~~h~~~V~~l~fsp 502 (732)
.+..+++|+..++.... .+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+..++.+++|+|
T Consensus 18 ~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILN---QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp GGTEEEEEETTTCCEEE---EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred CCCeEEEEeCcccceee---eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence 35577888888775433 344556667 9999999997776665 89999999999887 777777777666699999
Q ss_pred CCCeEEEEeCCC---eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc-EEEEECCCCeee-----eE
Q 004737 503 SLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCA-----GV 573 (732)
Q Consensus 503 dg~~Lasgs~Dg---~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~-I~iWDl~t~~~i-----~~ 573 (732)
++++|+++..++ .|.+||+.+++. +..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+ ..
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 171 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF 171 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence 999999555553 999999988653 445543 4457999999999888878777788 999998764332 22
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE---EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI 647 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~---i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl 647 (732)
+.....+..++|+|+++++++++. ++.|.+||+.+++. +..+.. ...+.+++|+|+|++|+++. ++.|.+||+
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 233456889999999998777764 78999999998877 777764 46678999999999887766 678999999
Q ss_pred CCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCC
Q 004737 648 GSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVN 716 (732)
Q Consensus 648 ~t~~~~~~i~~~~~~----~~---~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg 716 (732)
.++.. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+............-....++|+.
T Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 251 LSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp TTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred CCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 88632 113333222 11 22458999999998877765 49999999887665554444333333444443
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.6e-22 Score=239.42 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=204.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 3889999999999999986 999999999873 3455677888899999999999999987 56999999987653 33
Q ss_pred EeecCCcc----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------cEE
Q 004737 530 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 561 (732)
Q Consensus 530 ~l~~h~~~----------------V~sl~fspdg~~llaSgs~Dg--------------------------------~I~ 561 (732)
....+... +.++.|+|||+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544321 789
Q ss_pred EEECCC-CeeeeEEe---ccCCeeEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEcCCCC----CEEEEEEe
Q 004737 562 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 628 (732)
Q Consensus 562 iWDl~t-~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~-----dg~I~IwDl~t~~~i~~l~~h~~----~V~sla~s 628 (732)
+||+.+ ++...... +...+..++| |++++|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77654432 2345789999 99999998775 46899999999987776665443 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-Ce-EEEEc
Q 004737 629 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 701 (732)
Q Consensus 629 pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg---~I~IwDl~t-~~-~~~~~ 701 (732)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8878888776321 3 56666777778887 5999999887666544 788998753 43 33443
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECC----CeEEEe
Q 004737 702 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 731 (732)
Q Consensus 702 ~h~~~V~sla~spdg~~LaSgs~D----G~I~IW 731 (732)
. ...+..++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766543 345555
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=1.8e-22 Score=232.92 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=206.4
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCC--
Q 004737 450 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-- 523 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s-- 523 (732)
..+|++++|+|||++||+++. |+++.||++++++.......+...|..++|+|| +++++++. +...+||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999776665444333368999999999 77777775 45566665543
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC----C
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N 599 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d----g 599 (732)
..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.++++........ .+++|+|+|+++++++.+ .
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22222 33322 2345678999987766666556667799999988776666544 889999999999988876 7
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC--eEEEEECCCCCCceeEEEeecCCCceEEEE------
Q 004737 600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------ 670 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~------ 670 (732)
.|++||+.+++.. .+..|...+..++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence 8999999988765 5677888999999999999999766 77 8999999887 333 5556666666666
Q ss_pred --EeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCe---EEEeC
Q 004737 671 --FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 732 (732)
Q Consensus 671 --fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~---I~IWD 732 (732)
|+|||..+++++.++.+++|++ ++... .+...|.+++|+ +++++++++.+.. |.+||
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888999999999999 66553 344678999999 9999998887753 55554
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=2.6e-23 Score=245.30 Aligned_cols=275 Identities=13% Similarity=0.152 Sum_probs=206.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC---ceEEEEEcCCCCeEEEEeCC---------CeEEEE
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 519 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~l~fspdg~~Lasgs~D---------g~I~IW 519 (732)
.+.+++|+|||+++++ +.|++|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998876 7899999999999998888877765 49999999999999999874 788899
Q ss_pred ecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCe-----------------
Q 004737 520 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 580 (732)
Q Consensus 520 Dl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i----------------- 580 (732)
|+.++... +....+|...+..++|+|||+.++++. ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99987641 112234455589999999987776544 37899999998887665543 2222
Q ss_pred -eEEEEeCCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEcCC------C
Q 004737 581 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 619 (732)
Q Consensus 581 -~~v~~sp~g~~ll~~s~dg----------------------------------~I~IwDl~t~~~i~~l~~h------~ 619 (732)
..++|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999887653 7999999988765566544 5
Q ss_pred CCEEEEEEeCCCCEEEEEe-C----CeEEEEECCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 004737 620 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 685 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-D----g~I~IWDl~t~~~~~~i~~~~~-~~~~I----~sl~fspdg~~L~sg--s~dg-- 685 (732)
..+.+++|+|||++|++.. . ..|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999887765 2 379999998873 3333222 22333 378999999987764 4455
Q ss_pred ----eEEEEE-CCCCe---EEEEccCCCCeeE-EEEeCCCCEEEEEECC---CeEEEeC
Q 004737 686 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 732 (732)
Q Consensus 686 ----~I~IwD-l~t~~---~~~~~~h~~~V~s-la~spdg~~LaSgs~D---G~I~IWD 732 (732)
.|++|| ..++. ...+..+...+.. ++|+||+++|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577888 45555 4444444445554 6999999999876655 7888884
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=2.5e-22 Score=236.59 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=206.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-----CC
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PD 525 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-----~~ 525 (732)
..|.+++|+|| ++++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666654 59999999999876544 4567779999999999999995 689999999987 65
Q ss_pred ceeEEeecCCcc--------------eEEEEEcCCCCcEEEEEe--------------------------------CCCc
Q 004737 526 YSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNSE 559 (732)
Q Consensus 526 ~~~~~l~~h~~~--------------V~sl~fspdg~~llaSgs--------------------------------~Dg~ 559 (732)
. ......+... +.++.|+|||+.++++.. .+..
T Consensus 158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 3 3333333332 489999999877765541 3467
Q ss_pred EEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEcC-CCC---CEEEEE
Q 004737 560 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSVC 626 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t~-~~i~~l~~-h~~---~V~sla 626 (732)
|++||+.+++...... ....+..++|+|+++.|++++.++ .|++||+.++ ........ +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999888655442 224578999999999999988775 8999999998 43333221 222 246789
Q ss_pred EeC--CCCEEEEEe-CCeEEEEECC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCCe
Q 004737 627 WNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTENK 696 (732)
Q Consensus 627 ~sp--dg~~Lasgs-Dg~I~IWDl~-t~~~~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~dg-----~I~IwDl~t~~ 696 (732)
|+| +|++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.+++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999 999998887 8888888876 33 456666666677776 79999999887776653 67888888876
Q ss_pred EEEEccCCCCeeEEEEeCCCCEEEEEECC----CeEEEeC
Q 004737 697 TLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 732 (732)
Q Consensus 697 ~~~~~~h~~~V~sla~spdg~~LaSgs~D----G~I~IWD 732 (732)
...+ .|...+.+++|+||+++|+.++.+ +.|++||
T Consensus 394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 4444 477789999999999988876544 4699985
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=2.3e-22 Score=248.33 Aligned_cols=292 Identities=8% Similarity=-0.013 Sum_probs=233.5
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEcCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSL 504 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fspdg 504 (732)
+...++|....+. +...+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|||
T Consensus 182 ~~~~~lw~~~~~~---~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG 256 (1045)
T 1k32_A 182 GTRGKIWIEVNSG---AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG 256 (1045)
T ss_dssp TTCCEEEEEEETT---EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS
T ss_pred CCcCCEEEECCCC---CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC
Confidence 3456677654442 33445899999999999998 6777888889999998653 44455666565 46778999999
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeec-----------CCcceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAG 572 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~-----------h~~~V~sl~fs-pdg~~llaSgs~Dg~I~iWDl~t~~~i~ 572 (732)
++|+++ .++.|++||+.... +..+.+ |...+.+++|+ |+|..+++++ ++.|++|++..++...
T Consensus 257 ~~la~~-~~~~i~~~d~~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 257 RRILFS-KGGSIYIFNPDTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp SCEEEE-ETTEEEEECTTTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE
T ss_pred CEEEEE-eCCEEEEecCCceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE
Confidence 999988 48999999995432 334443 34579999999 9987666544 7899999999877655
Q ss_pred EEeccC-CeeEEEEeCCCCEEEEEEcCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737 573 VFKCQS-GATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 649 (732)
Q Consensus 573 ~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~-IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t 649 (732)
...+.. .+..++|+ ++..+++++.++.|. +||+.+++... +.+|...+.+++|+|||++|++++ ++.|++||+.+
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 433444 68889999 999999999888899 99998876554 347888999999999999999988 88999999988
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEE
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg----------~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~L 719 (732)
+ ........+...+..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|
T Consensus 410 g---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 410 G---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp C---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred C---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEE
Confidence 7 45555556788899999999999998887654 8999999999877888898999999999999999
Q ss_pred EEEECCCeEEEeC
Q 004737 720 ASASHDKCVKIWK 732 (732)
Q Consensus 720 aSgs~DG~I~IWD 732 (732)
++++.++...+|+
T Consensus 487 ~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 487 YYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEESCCCCCEEC
T ss_pred EEEecccCCcCcc
Confidence 9999988877774
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=7e-21 Score=203.99 Aligned_cols=270 Identities=14% Similarity=0.144 Sum_probs=191.7
Q ss_pred CceeeeeecCC-CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCe--EEEEeccCCCceEEEE
Q 004737 426 DRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVR 499 (732)
Q Consensus 426 d~~~r~wd~~~-g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~ 499 (732)
+..+.+|.++. ...+..+.. ..+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 34455555543 122333333 34456788899999999 555543 6899999998776 3444455777899999
Q ss_pred EcCCCCeEEEEe-CCCeEEEEecCCCCc-e-eEEeec---------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-
Q 004737 500 FSPSLSRLATSS-ADRTVRVWDTENPDY-S-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN- 566 (732)
Q Consensus 500 fspdg~~Lasgs-~Dg~I~IWDl~s~~~-~-~~~l~~---------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~- 566 (732)
|+||+++|++++ .++.|.+|++..... . +..+.. +...+.+++|+|+++ ++++...++.|++||+.
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence 999999998888 679999999964321 1 222221 123488999999988 77777778999999998
Q ss_pred CCeeeeE--Ee--ccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcCCC------CCEEEEEEeCCC
Q 004737 567 NGSCAGV--FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSG 631 (732)
Q Consensus 567 t~~~i~~--~~--~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~~h~------~~V~sla~spdg 631 (732)
+++.... +. ....+..++|+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|||
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 5544322 22 223578899999999777765 478999999874 543 23333322 358899999999
Q ss_pred CEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCeEE
Q 004737 632 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 698 (732)
Q Consensus 632 ~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~Iw--Dl~t~~~~ 698 (732)
++|+++. ++.|.+|++........+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++.
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9885544 7899999997432335566666666778899999999999998876 799999 55677766
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=6.3e-22 Score=244.39 Aligned_cols=291 Identities=11% Similarity=0.058 Sum_probs=230.7
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEEcCCCeEEEEeccCCCce------
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWI------ 495 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~V------ 495 (732)
.+.+|+...+. ...+.+|...|.+++|||||++||+++.+ ..|++||+.+++ ...+..|...+
T Consensus 34 ~l~~~~~~gg~----~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 34 DLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMF 108 (1045)
T ss_dssp EEEEEETTTCC----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEEC
T ss_pred cEEEEECCCCc----EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccc
Confidence 56778876663 45577899999999999999999988643 479999998877 56788888888
Q ss_pred -EEEEEcCCCCeEEEEeCC------CeEEEEecCCCCce-----------------------------------------
Q 004737 496 -TDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS----------------------------------------- 527 (732)
Q Consensus 496 -~~l~fspdg~~Lasgs~D------g~I~IWDl~s~~~~----------------------------------------- 527 (732)
.+++|+|||+++++++.+ ..|.+||+.++...
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999977777654 35777877543211
Q ss_pred -------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC
Q 004737 528 -------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 599 (732)
Q Consensus 528 -------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg 599 (732)
...+.+|...+.++.|+++ .++++++.|+.+.+|++.. +.....+..+..+...+|+|++..++++ .++
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~ 265 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGG 265 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETT
T ss_pred EECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCC
Confidence 1223457778888999876 6777888889999998653 3344455545567788999999988877 589
Q ss_pred eEEEEECCCCeEEEEEcC-----------CCCCEEEEEEe-CCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCC-ce
Q 004737 600 YISILDVETQVCRLKLQG-----------HKNQVHSVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN-KF 666 (732)
Q Consensus 600 ~I~IwDl~t~~~i~~l~~-----------h~~~V~sla~s-pdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~-~I 666 (732)
.|++||+...... .+.. |...+.+++|+ |||++|++++++.|++|++..+ . ...+..+.. .+
T Consensus 266 ~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~ 340 (1045)
T 1k32_A 266 SIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---Y-VLKVPEPLRIRY 340 (1045)
T ss_dssp EEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS---B-EEECSCCSCEEE
T ss_pred EEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC---c-eEEccCCCcceE
Confidence 9999999554433 5544 23368899999 9999999988999999999875 2 233555666 89
Q ss_pred EEEEEeCCCCEEEEEEcCCeEE-EEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 667 HSCVFHPTFPSLLVIGCYETLE-LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 667 ~sl~fspdg~~L~sgs~dg~I~-IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..++|+ +++.|++++.+..|+ +||+.+++...+..|...+..++|+||+++|++++.|+.|++||
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 999999 999999999888899 99999988776668888999999999999999999999999996
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.4e-20 Score=201.72 Aligned_cols=260 Identities=11% Similarity=0.101 Sum_probs=182.5
Q ss_pred CCcEEEEEc--CCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCc-eeEEeecCCcceEEEEE
Q 004737 471 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 543 (732)
Q Consensus 471 Dg~I~VWd~--~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~-~~~~l~~h~~~V~sl~f 543 (732)
++.|.+|++ ++++... ....+...+..++|+||++ |++++. ++.|.+||+.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777655 4566543 3334556788999999999 555544 68999999976543 23344557778999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-Ce--eeeEEecc----------CCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CC
Q 004737 544 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ 609 (732)
Q Consensus 544 spdg~~llaSgs~Dg~I~iWDl~t-~~--~i~~~~~~----------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~ 609 (732)
+|+++.+++++..++.|.+||+.. +. .+..+... ..+.+++|+|+++.+++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999887776666889999999963 32 23333221 137789999999944444457899999998 45
Q ss_pred eEE--EEEcC-CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC-CceeEEEeecCC------CceEEEEEeCCCCE
Q 004737 610 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTG------NKFHSCVFHPTFPS 677 (732)
Q Consensus 610 ~~i--~~l~~-h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~-~~~~i~~~~~~~------~~I~sl~fspdg~~ 677 (732)
+.. ..+.. ....+..++|+|||++|++++ ++.|.+|++.... ....+..+.... ..+..++|+|+|++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 22222 234678999999999777765 7899999987521 112233333222 45889999999998
Q ss_pred EEEEE-cCCeEEEEECCCC---eEE-EEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEe
Q 004737 678 LLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 731 (732)
Q Consensus 678 L~sgs-~dg~I~IwDl~t~---~~~-~~~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW 731 (732)
|+++. .++.|.+|++... +.+ .+..+...+.+++|+||+++|++++.+ +.|.||
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 86554 5789999999732 333 444566778999999999998888765 899999
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=9.2e-22 Score=232.05 Aligned_cols=292 Identities=12% Similarity=0.079 Sum_probs=207.7
Q ss_pred CCceeeeeecCCCceeEEEEEecCCCC---CeEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCeEEEEec---
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLE--- 489 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~---~V~~lafSpdg~~Lasgs~D---------g~I~VWd~~t~~~~~~l~--- 489 (732)
.|..+++|+..++.. ...+.+|.. .|.+++|||||++|++++.+ +.|++||+.+++. ..+.
T Consensus 35 ~dg~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~ 110 (723)
T 1xfd_A 35 QKGTVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE 110 (723)
T ss_dssp SSSCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT
T ss_pred CCCCEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc
Confidence 345788999888754 344566665 49999999999999999874 7888999998876 3333
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce------------------EEEEEcCCCCcEE
Q 004737 490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV------------------MSLDFHPSKEDLL 551 (732)
Q Consensus 490 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V------------------~sl~fspdg~~ll 551 (732)
.|...+.+++|+|||++||+++. +.|++||+.++.. ......+...+ .+++|+|||+.++
T Consensus 111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la 188 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (723)
T ss_dssp CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred cccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence 44556899999999999999986 7999999998664 44444333333 7899999987777
Q ss_pred EEEeCC---------------------------------CcEEEEECCCCeeeeEEec-------cCCeeEEEEeCCCCE
Q 004737 552 CSCDNN---------------------------------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGR 591 (732)
Q Consensus 552 aSgs~D---------------------------------g~I~iWDl~t~~~i~~~~~-------~~~i~~v~~sp~g~~ 591 (732)
++...+ ..|++||+.++++...+.. ...+..++|+|+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 554322 2799999998876555543 234788999999988
Q ss_pred EEEEEcC----CeEEEEECCCCeEEEEEcC-CCCCEE----EEEEeCCCCEEEEE-e--CC------eEEEEEC-CCCCC
Q 004737 592 ILAAAIE----NYISILDVETQVCRLKLQG-HKNQVH----SVCWNTSGEYLASV-S--DE------LVRVWSI-GSGSK 652 (732)
Q Consensus 592 ll~~s~d----g~I~IwDl~t~~~i~~l~~-h~~~V~----sla~spdg~~Lasg-s--Dg------~I~IWDl-~t~~~ 652 (732)
+++.... ..|++||+.++++...+.. +...+. .++|+|||+.|+.. + ++ .|.+||+ ..+.
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~- 347 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS- 347 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS-
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC-
Confidence 7666543 5799999999887665543 334443 78999999977654 3 66 4667773 3332
Q ss_pred ceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---eEEEEcc---CCCCeeEEEEeCCCCEEEEE
Q 004737 653 GECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA---HDKLVSSLAASTVNGMVASA 722 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~d---g~I~IwDl~t~---~~~~~~~---h~~~V~sla~spdg~~LaSg 722 (732)
..+...+......+.. ++|+|+++.|++.+.+ +.++||++... +...+.. |...+..++|+||+++|+..
T Consensus 348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 0012233333344444 6999999999877766 67889987642 2223333 67779999999999987765
Q ss_pred E
Q 004737 723 S 723 (732)
Q Consensus 723 s 723 (732)
.
T Consensus 428 ~ 428 (723)
T 1xfd_A 428 C 428 (723)
T ss_dssp C
T ss_pred c
Confidence 3
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=5e-20 Score=198.64 Aligned_cols=284 Identities=11% Similarity=0.049 Sum_probs=200.9
Q ss_pred CCceeeeeecCC-CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEEcCC--CeE--EEEeccCCCce
Q 004737 425 RDRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWI 495 (732)
Q Consensus 425 ~d~~~r~wd~~~-g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D----g~I~VWd~~t--~~~--~~~l~~h~~~V 495 (732)
.+..+.+|.++. ...+..+..+ |...+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+....
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 345566666532 2233444444 77788899999999999999886 7999998865 443 33444456677
Q ss_pred EEEEEcCCCCeEEEEe-CCCeEEEEecCCCCcee--EEe---ec--------CCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 496 TDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL--RTF---TG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 496 ~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~--~~l---~~--------h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
..+++ ++++|++++ .++.|.+|++....... ... .+ +...+.+++|+|+++.+++++..++.|+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 88888 788877776 57899999997543211 111 11 1234588999999988887777789999
Q ss_pred EEECCCCee--------------eeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE--EEEEc---CCCCC
Q 004737 562 YWSINNGSC--------------AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQ 621 (732)
Q Consensus 562 iWDl~t~~~--------------i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~--i~~l~---~h~~~ 621 (732)
+|++..... .........+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG 260 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence 999875431 11222345688999999999988888 589999999987754 23332 23456
Q ss_pred EEEEEEeCCCCEEEEEe-C--CeEEEEECCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCC
Q 004737 622 VHSVCWNTSGEYLASVS-D--ELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTE 694 (732)
Q Consensus 622 V~sla~spdg~~Lasgs-D--g~I~IWDl~t~-~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~Iw--Dl~t 694 (732)
+.+++|+|||++|+++. + +.|.+|++... .....+..+.. ...+..++|+|++++|++++ .++.|.+| |..+
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 78999999999987766 5 68999999621 22234555554 56788999999999999988 45788885 5567
Q ss_pred CeEEEEc--cCCCCeeEEEEe
Q 004737 695 NKTLTLS--AHDKLVSSLAAS 713 (732)
Q Consensus 695 ~~~~~~~--~h~~~V~sla~s 713 (732)
+++.... .+...+.|+.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7776443 345678999886
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=4.5e-21 Score=203.92 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=194.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEee
Q 004737 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 532 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~ 532 (732)
.++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45788889999999999999999999999988886543 2578999999998665 445689999999988653 33333
Q ss_pred -cC-----CcceEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCe---eeeEEeccCCeeEEEEeCCCCEE
Q 004737 533 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 533 -~h-----~~~V~sl~fspdg~~llaSgs~-----------Dg~I~iWDl~t~~---~i~~~~~~~~i~~v~~sp~g~~l 592 (732)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347899999998777655533 4899999998844 344555566788999999998 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCC------------------------CEEEEEEeCCCCEEEEEe--CCeEEEEE
Q 004737 593 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 646 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t~~~i~~l~~h~~------------------------~V~sla~spdg~~Lasgs--Dg~I~IWD 646 (732)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 44599999999988877654320 344567766542211111 11222345
Q ss_pred CCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 647 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 647 l~t~~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 54432 11222233566788999999 99988888 889999999999987544455568899999999988888889
Q ss_pred CeEEEeC
Q 004737 726 KCVKIWK 732 (732)
Q Consensus 726 G~I~IWD 732 (732)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999997
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=4.3e-21 Score=208.27 Aligned_cols=287 Identities=11% Similarity=0.072 Sum_probs=208.4
Q ss_pred EEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737 442 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 513 (732)
Q Consensus 442 ~v~~l~~H~~~V~~-----lafSpdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D 513 (732)
++..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++......++...+..++|+||++.|++++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556677766666 899999999999887 66 48889999998887777777666678899999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEE--EcCCCCcEEEEE---------------------eCCCcEEEEECCCCee
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC 570 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~--fspdg~~llaSg---------------------s~Dg~I~iWDl~t~~~ 570 (732)
+.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998763 444555555554444 478876555321 2346899999999987
Q ss_pred eeEEeccCCeeEEEEeC-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCC--CCEEEEEEeCCCCEEEEEe--C
Q 004737 571 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D 639 (732)
Q Consensus 571 i~~~~~~~~i~~v~~sp-~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~--~~V~sla~spdg~~Lasgs--D 639 (732)
.........+..+.|+| +++.|+.+..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ +
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 77766667789999999 99888887763 37888898766443 333333 3578899999999776544 3
Q ss_pred C----eEEEEECCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCeEEEEccC
Q 004737 640 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAH 703 (732)
Q Consensus 640 g----~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl~fspdg~~L~sg---------s~dg~I~IwDl~t~~~~~~~~h 703 (732)
+ .|++||+.++.. ..+..+..+... ...+.|+|+|+.|++. ..+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 3 399999988743 233333221000 1113799999988765 3455899999999988777777
Q ss_pred CC-----------CeeEEEEeCCCCEEEEEE-CCCeEEEe
Q 004737 704 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW 731 (732)
Q Consensus 704 ~~-----------~V~sla~spdg~~LaSgs-~DG~I~IW 731 (732)
.. .+.+++|+||++.|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688899999999887666 57777777
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=7.4e-21 Score=200.93 Aligned_cols=261 Identities=12% Similarity=0.076 Sum_probs=198.7
Q ss_pred CCceeeeeecCCCceeEEEEEec-CCCC-CeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEecc-C----CCceE
Q 004737 425 RDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEE-H----TQWIT 496 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~l~-~H~~-~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~-h----~~~V~ 496 (732)
.+..+.+|+..++..... +. ++.. .+.+++|+|||++++ ++..++.|.+||+.+++.+..+.. + ...+.
T Consensus 9 ~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKV---ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TTTEEEEEETTTTEEEEE---EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CCCeEEEEECCCCcEEEE---EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 355678888877754333 33 2222 488999999998765 455678999999999988877653 2 22678
Q ss_pred EEEEcCCCCeEEEEe------------CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737 497 DVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 497 ~l~fspdg~~Lasgs------------~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD 564 (732)
+++|+|++++|++++ .++.|.+||+.+++. ...+.. ...+.+++|+|+++.++++ ++.|++||
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d 160 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMD 160 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEE
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEE
Confidence 899999999999886 579999999987653 444443 4568889999998777655 68899999
Q ss_pred CCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC------------------------eEEEEECCCCeEE-EEEcCCC
Q 004737 565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------------------------YISILDVETQVCR-LKLQGHK 619 (732)
Q Consensus 565 l~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg------------------------~I~IwDl~t~~~i-~~l~~h~ 619 (732)
+.+++.+..+........+.|+|++..+++.+..+ .|.+||+.+++.. ..+..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 240 (337)
T 1pby_B 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC
Confidence 99999887776544223447888887665554332 4789999998764 3344566
Q ss_pred CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 620 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 620 ~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
..+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 241 ~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 788999999999999888 799999999886 55555543 456789999999999999988999999999999877
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.3e-20 Score=222.08 Aligned_cols=258 Identities=14% Similarity=0.103 Sum_probs=194.9
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-----CeEEEEeccCCCc-------
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW------- 494 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~------- 494 (732)
..+.+|+..++. ...+..|...|.+++|||||++||++ .|+.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~----~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARK----VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTE----EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CEEEEEECCCCc----eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 678899988774 23455677889999999999999985 679999999998 7766554444333
Q ss_pred -------eEEEEEcCCCCeEEEEe---------------------------------CCCeEEEEecCCCCceeEEe--e
Q 004737 495 -------ITDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTF--T 532 (732)
Q Consensus 495 -------V~~l~fspdg~~Lasgs---------------------------------~Dg~I~IWDl~s~~~~~~~l--~ 532 (732)
+.+++|+|||++|++++ .+..|++||+.++.. .... .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC
Confidence 48999999999999997 446899999987653 2222 2
Q ss_pred cCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-eeeeEEeccC-----CeeEEEEeC--CCCEEEEEEcCC
Q 004737 533 GHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG-SCAGVFKCQS-----GATQMRFQP--RLGRILAAAIEN 599 (732)
Q Consensus 533 ~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~-~~i~~~~~~~-----~i~~v~~sp--~g~~ll~~s~dg 599 (732)
.|...+.+++|+|+++.+++++. ++ .|++||+.++ .......... .+..++|+| ++.+++++..++
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEV-NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEE-CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCceeEeeEEEECCCCEEEEEEe-CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 46778999999999876665443 43 8999999998 4433332211 236789999 988888888889
Q ss_pred eEEEEECC-CCeEEEEEcCCCCCEEE-EEEeCCCCEEEEEe--CC----eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 600 YISILDVE-TQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 600 ~I~IwDl~-t~~~i~~l~~h~~~V~s-la~spdg~~Lasgs--Dg----~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
.+.||++. ++..+..+..+...+.+ ++|+|+++.|+.++ ++ .|..||+.++. ...+. +...+..++|
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~ 408 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQL 408 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEE
Confidence 88888876 56777778778888877 79999999887665 44 67777776653 22232 4567899999
Q ss_pred eCCCCEEEEEEcC----CeEEEEECCCCe
Q 004737 672 HPTFPSLLVIGCY----ETLELWNMTENK 696 (732)
Q Consensus 672 spdg~~L~sgs~d----g~I~IwDl~t~~ 696 (732)
+|+++++++...+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999988877554 369999999887
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.3e-19 Score=193.17 Aligned_cols=235 Identities=9% Similarity=0.086 Sum_probs=190.5
Q ss_pred CCceEEEEEcCCCCeEEEEeC-------CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737 492 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~-------Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD 564 (732)
...+..++|+|++++|++++. ++.|.+||..+++. ...+.. ...+..++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 356889999999999888874 56899999998763 444443 345789999999988888888889999999
Q ss_pred CCCCeeeeEEeccC----------CeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCC
Q 004737 565 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 632 (732)
Q Consensus 565 l~t~~~i~~~~~~~----------~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~ 632 (732)
+.+++.+..+.... .+..++|+|+++++++++. ++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888877543 1678999999998888873 78899999999999888876666788999999999
Q ss_pred EEEEEe-CCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCC
Q 004737 633 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 706 (732)
Q Consensus 633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~ 706 (732)
+|++++ ++.|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|++||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999887 55555443 45568889999999988888765 799999999998873332222
Q ss_pred eeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737 707 VSSLAASTVNGMVASAS-HDKCVKIWK 732 (732)
Q Consensus 707 V~sla~spdg~~LaSgs-~DG~I~IWD 732 (732)
..+++|+|++++|+.++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 26799999999766665 689999996
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=3.1e-20 Score=207.39 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=178.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----------eEE-----EEeccCCCceEEEEEcCCCCeEE----E
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 509 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~~-----~~l~~h~~~V~~l~fspdg~~La----s 509 (732)
...++++++++++.++++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 44689999999999999999887 888875311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEecCCC-----Cc-----eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccC
Q 004737 510 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 578 (732)
Q Consensus 510 gs~Dg~I~IWDl~s~-----~~-----~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~ 578 (732)
++.|++|+|||+.+. .. .+..+.+|...|.+++|+|++..+|++++.||.|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998753 11 2456678999999999999877888899999999999999887664443 456
Q ss_pred CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-------CCCEEEEEEeCCCCEEEEEe--CC------eEE
Q 004737 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS--DE------LVR 643 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-------~~~V~sla~spdg~~Lasgs--Dg------~I~ 643 (732)
.+.+++|+|++.+|++++.||.|++||++ ++....+..| ...|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 79999999999999999999999999998 5555555443 23799999999988887655 53 399
Q ss_pred EEECCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 004737 644 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 692 (732)
Q Consensus 644 IWDl~t~~~--~~~i~~~~-------~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl 692 (732)
+|+++.... ...+..+. ....+...+.+.++.+++++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 12222221 1223334445557878777776644 4555554
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=2.6e-19 Score=193.04 Aligned_cols=268 Identities=9% Similarity=0.078 Sum_probs=188.5
Q ss_pred CCCEEEEEEC----CCcEEEEEc--CCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----CeEEEEecCCC--Cc-e
Q 004737 461 DGKLLATGGH----DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S 527 (732)
Q Consensus 461 dg~~Lasgs~----Dg~I~VWd~--~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~--~~-~ 527 (732)
...++++|+. ++.|.+|++ ++++.......+...+..++|+||+++|++++.+ +.|.+|+++.. .. .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 3445666643 568888866 4565443322267778899999999999999886 79999998764 21 1
Q ss_pred eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----EEec-----------cCCeeEEEEeCCCCEE
Q 004737 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKC-----------QSGATQMRFQPRLGRI 592 (732)
Q Consensus 528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~----~~~~-----------~~~i~~v~~sp~g~~l 592 (732)
+.....+...+..+++ +++.++++...++.|.+|++.....+. .+.. ...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2233335566778888 667777676678999999997543322 1111 1224779999999988
Q ss_pred EEEEc-CCeEEEEECCCCe-------E------EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeE
Q 004737 593 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 656 (732)
Q Consensus 593 l~~s~-dg~I~IwDl~t~~-------~------i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i 656 (732)
++++. ++.|.+|++.... . ......+...+..++|+|+|+++++++ ++.|.+||+.++.. ..+
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence 77775 7899999887533 1 122223456788999999999887776 78999999986522 223
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCeEE--EEccCCCCeeEEEEeCCCCEEEEEE-CCC
Q 004737 657 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL--TLSAHDKLVSSLAASTVNGMVASAS-HDK 726 (732)
Q Consensus 657 ~~~~---~~~~~I~sl~fspdg~~L~sgs~d--g~I~IwDl~--t~~~~--~~~~h~~~V~sla~spdg~~LaSgs-~DG 726 (732)
..+. .+......++|+|++++|+++..+ +.|.+|++. +++.. ........+.+++|+|++++|++++ .++
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence 3332 233456899999999999887765 789999985 45533 2222256788999999999988888 678
Q ss_pred eEEEe
Q 004737 727 CVKIW 731 (732)
Q Consensus 727 ~I~IW 731 (732)
.|.||
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99996
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=224.44 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=199.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC---ceEEEEEcCCCCeEEEEeC---------CCeEEEEecC
Q 004737 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 522 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~l~fspdg~~Lasgs~---------Dg~I~IWDl~ 522 (732)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. |+.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965555 4699999999999998877766544 4899999999999999876 7899999998
Q ss_pred CCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-------------------CCeeE
Q 004737 523 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ 582 (732)
Q Consensus 523 s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-------------------~~i~~ 582 (732)
+++... ..+ ...+..++|+|||+.++++ . ++.|++||+.++++....... .....
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765300 222 2568999999999877654 3 789999999888765433211 11248
Q ss_pred EEEeCCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EEcCCCC
Q 004737 583 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 620 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg----------------------------------~I~IwDl~t~~~i---~-----~l~~h~~ 620 (732)
++|+|+|++|++++.|. .|++||+.+++.+ . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 1 1335778
Q ss_pred CEEEEEEeCCCCEEEEEe-CC----eEEEEE----CCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 004737 621 QVHSVCWNTSGEYLASVS-DE----LVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 683 (732)
Q Consensus 621 ~V~sla~spdg~~Lasgs-Dg----~I~IWD----l~t~~~~~~i~-~~~~~~~~I~-----sl~fspdg~~L~sg--s~ 683 (732)
.+.+++|+||++++++.. .+ .|.+|| +.++....... ....+...+. .+.|+|+|+.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 22 588899 76653222221 0124555555 78999999976653 34
Q ss_pred CC--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC-----CeEEEeC
Q 004737 684 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 732 (732)
Q Consensus 684 dg--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D-----G~I~IWD 732 (732)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888899888766776777778888888 88877777665 7788884
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=9.7e-19 Score=189.82 Aligned_cols=267 Identities=11% Similarity=0.059 Sum_probs=186.3
Q ss_pred EEEEEECC--CcEEEEEc--CCCeEEEE--ec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC-CCCceeEEeec-C
Q 004737 464 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 534 (732)
Q Consensus 464 ~Lasgs~D--g~I~VWd~--~t~~~~~~--l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~-s~~~~~~~l~~-h 534 (732)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+||+++|++++.+ .|.+||+. +++. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45566653 46777664 56654322 21 234468899999999999999888 99999997 5543 222211 1
Q ss_pred CcceEEEEEcCCCCc-EEEEEe-------------CCCcEEEEECC-CCeeeeEEe-----ccCCeeEEEEeCCCCEEEE
Q 004737 535 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 594 (732)
Q Consensus 535 ~~~V~sl~fspdg~~-llaSgs-------------~Dg~I~iWDl~-t~~~i~~~~-----~~~~i~~v~~sp~g~~ll~ 594 (732)
.+.+.+++|+|+++. ++++++ .++.+.+|++. .++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123567899999875 344553 68999999997 466554443 2356899999999998887
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEc--CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCC--CCCceeEEEee---c
Q 004737 595 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELS---C 661 (732)
Q Consensus 595 ~s~-dg~I~IwDl~-t~~~i--~~l~--~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t--~~~~~~i~~~~---~ 661 (732)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|+|++|++++ ++.|.+|++.. +........+. .
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 765 6799999998 67543 3333 2456799999999999988877 67999998763 32110011221 1
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCeEEE----EccCCCCeeEEEEeC---CC
Q 004737 662 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 716 (732)
Q Consensus 662 ~----~~------~I~sl~-fspdg~~L~sgs~dg------~I~IwDl~-t~~~~~----~~~h~~~V~sla~sp---dg 716 (732)
. .. .+..++ |+|+|++|+++..+. .|.+|++. +++... ...+...+..++|+| |+
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 578899 999999988776533 89999996 566542 223556678899999 89
Q ss_pred CEEEEEECC-CeEEEeC
Q 004737 717 GMVASASHD-KCVKIWK 732 (732)
Q Consensus 717 ~~LaSgs~D-G~I~IWD 732 (732)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999998864 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=9e-20 Score=197.60 Aligned_cols=272 Identities=13% Similarity=0.041 Sum_probs=192.3
Q ss_pred CeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 452 KVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
.+.+++|+|||++|+.+..+ ..|.+||+.+++.......+...+..+.|+||+++|++++.++.|++||+.++.. .
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-Q 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-E
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-E
Confidence 37889999999998877643 4788899998876554443333334488999999999999999999999987653 3
Q ss_pred EEeecCCcceEE-------------------EEEcCCCCcEEEEE----eCCCcEEEEECCCCeeeeEEeccCCeeEEEE
Q 004737 529 RTFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRF 585 (732)
Q Consensus 529 ~~l~~h~~~V~s-------------------l~fspdg~~llaSg----s~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~ 585 (732)
..+..+...... +.|+|+++.+++.. ..+..|++||+.+++..........+..+.|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 333333332222 34567766554332 4567899999999887777766677899999
Q ss_pred eC-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCC
Q 004737 586 QP-RLGRILAAAIE------NYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 650 (732)
Q Consensus 586 sp-~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~ 650 (732)
+| ++..|+.++.+ ..|.+||+..++... +..+ ...+..++|+|+|++|+..+ + +.|++||+.++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 77777776653 368999987665333 3223 23578899999999777665 3 34999999876
Q ss_pred CCceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCeEEEEccCCC--------
Q 004737 651 SKGECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK-------- 705 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs----------------~dg~I~IwDl~t~~~~~~~~h~~-------- 705 (732)
.. ..+.... ... +.|+| +++++++++ .+..|++||+.+++...+..+..
T Consensus 275 ~~-~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 275 EN-EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp CE-EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred Ce-EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 32 2222221 133 89999 999887755 23689999999887666655554
Q ss_pred ---CeeEEEEeCCCCEEEEEEC-CCeEEEe
Q 004737 706 ---LVSSLAASTVNGMVASASH-DKCVKIW 731 (732)
Q Consensus 706 ---~V~sla~spdg~~LaSgs~-DG~I~IW 731 (732)
.+..++|+|+++.|+.++. ++...||
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2667899999998887764 5666665
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=213.86 Aligned_cols=297 Identities=11% Similarity=0.032 Sum_probs=202.6
Q ss_pred CceeeeeecCCCceeEEEEEecCCCC---CeEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCeEEEEeccCCC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQ 493 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~---~V~~lafSpdg~~Lasgs~---------Dg~I~VWd~~t~~~~~~l~~h~~ 493 (732)
+..+++|+..++.. ...+.+|.. .|.+++|||||++||+++. ++.|++||+.+++.+... ....
T Consensus 35 d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~ 110 (719)
T 1z68_A 35 DNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPR 110 (719)
T ss_dssp TSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCS
T ss_pred CCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCc
Confidence 45788899888753 333444433 4899999999999998876 789999999998763111 1135
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce-----------------EEEEEcCCCCcEEEEEeC
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDN 556 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-----------------~sl~fspdg~~llaSgs~ 556 (732)
.+.+++|+|||+.||++. |+.|++||+.++.....+..++...| .+++|+|||+.++++...
T Consensus 111 ~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 111 PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 688999999999999986 78999999987664222223333222 489999998777655443
Q ss_pred CC---------------------------------cEEEEECCCCeee--eEEe-------ccCCeeEEEEeCCCCEEEE
Q 004737 557 NS---------------------------------EIRYWSINNGSCA--GVFK-------CQSGATQMRFQPRLGRILA 594 (732)
Q Consensus 557 Dg---------------------------------~I~iWDl~t~~~i--~~~~-------~~~~i~~v~~sp~g~~ll~ 594 (732)
++ .|++||+.+++.. ..+. +...+..++|+|++..+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~ 269 (719)
T 1z68_A 190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ 269 (719)
T ss_dssp CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence 22 7889999987653 1111 2234789999999655555
Q ss_pred EEcC----CeEEEEE----CCCCeEEEEE----cCCCCCEE-----EEEEeCCCCEEEE--Ee-CC--eEEEEECCCCCC
Q 004737 595 AAIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSK 652 (732)
Q Consensus 595 ~s~d----g~I~IwD----l~t~~~i~~l----~~h~~~V~-----sla~spdg~~Las--gs-Dg--~I~IWDl~t~~~ 652 (732)
.... ..|.+|| +.++++...+ ..|...+. .++|+|||+.|+. .. ++ .|.+||+.++.
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~- 348 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN- 348 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence 4332 2488999 8877665444 35777776 8899999986554 33 55 67778876653
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECC--CC--eEEEEc----cCCCCeeEEEEeCCCCEE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~--t~--~~~~~~----~h~~~V~sla~spdg~~L 719 (732)
...+..+...+..+.++ ++..|++.+.+ +.+++|.+. ++ +...+. +|...+..+.|++++++|
T Consensus 349 ---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l 424 (719)
T 1z68_A 349 ---AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYY 424 (719)
T ss_dssp ---CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSE
T ss_pred ---eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEE
Confidence 33444455667777777 88888888776 677777664 34 223332 266778899999999876
Q ss_pred EE-EECC--CeEEEeC
Q 004737 720 AS-ASHD--KCVKIWK 732 (732)
Q Consensus 720 aS-gs~D--G~I~IWD 732 (732)
+. ++.+ ..+.+||
T Consensus 425 ~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 425 ALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEECCBSSCEEEEEC
T ss_pred EEEcCCCCCCeEEEEE
Confidence 64 4333 3566664
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=3.5e-18 Score=181.50 Aligned_cols=260 Identities=10% Similarity=0.061 Sum_probs=181.5
Q ss_pred CceeeeeecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCC------CceEE
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHT------QWITD 497 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~------~~V~~ 497 (732)
+..+.+|+..++.... .+..+. ..+.+++|+|||++++ ++..++.|.+||+.+++.+..+..+. ..+.+
T Consensus 20 ~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCCcEEE---EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence 5667888887775433 333332 2578999999999765 44568999999999999887775332 33789
Q ss_pred EEEcCCCCeEEEEeCC------------CeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004737 498 VRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563 (732)
Q Consensus 498 l~fspdg~~Lasgs~D------------g~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iW 563 (732)
++|+||+++|++++.+ +.|.+||+.++.. .+..+. +...+.+++|+|+++ +++ ++ +.|++|
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~ 171 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKM 171 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEE
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEE
Confidence 9999999999998865 8999999987432 123333 344689999999987 554 43 349999
Q ss_pred ECCCCeeeeEEeccC-------------------------CeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc
Q 004737 564 SINNGSCAGVFKCQS-------------------------GATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ 616 (732)
Q Consensus 564 Dl~t~~~i~~~~~~~-------------------------~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~-i~~l~ 616 (732)
|+.+++.+..+.... ....+++++++....... ....+..+|..+++. ...+.
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 999998887765432 223355554432111000 111222355555432 12233
Q ss_pred CCCCCEEEEEEeC-CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 617 GHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 617 ~h~~~V~sla~sp-dg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
.+...+.+++|+| ++++++++ ++.|.+||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.++
T Consensus 252 ~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 3566889999999 99999988 889999999887 55555543 345778999999999999888899999999999
Q ss_pred eEE
Q 004737 696 KTL 698 (732)
Q Consensus 696 ~~~ 698 (732)
+.+
T Consensus 327 ~~~ 329 (349)
T 1jmx_B 327 EKV 329 (349)
T ss_dssp EEE
T ss_pred cee
Confidence 877
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=7.6e-18 Score=182.76 Aligned_cols=246 Identities=12% Similarity=0.082 Sum_probs=175.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-CCeEEEEecc-CCCceEEEEEcCCCCe--EEEEe-------------
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSR--LATSS------------- 511 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~-h~~~V~~l~fspdg~~--Lasgs------------- 511 (732)
+...+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+||+++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999887 99999997 7776543321 1123567899999994 45553
Q ss_pred CCCeEEEEecCCCCceeEEee----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeee--EEec---cCCee
Q 004737 512 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFKC---QSGAT 581 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~~~~l~----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~--~~~~---~~~i~ 581 (732)
.++.+.+|++.........+. .+...+.+++|+|+|+.++++...++.|++||+. +++... .+.. ...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974322222222 2456799999999987766555457899999998 676532 3331 35688
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEcC-------CCC------CEEEEE-EeCCCCEEEEEe--C
Q 004737 582 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 639 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~-dg~I~IwDl~--t~~~i---~~l~~-------h~~------~V~sla-~spdg~~Lasgs--D 639 (732)
.++|+|++++++++.. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 45542 12221 122 588999 999999888765 3
Q ss_pred C-----eEEEEECC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCe
Q 004737 640 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 696 (732)
Q Consensus 640 g-----~I~IWDl~-t~~~~~~i~-~~~~~~~~I~sl~fsp---dg~~L~sgs~d-g~I~IwDl~t~~ 696 (732)
+ .|.+|++. ++.. ..+. ....+......++|+| ++++|++++.+ +.|.+|++....
T Consensus 277 ~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 3321 2111 2333444566789999 89999999875 799999987663
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=5.3e-19 Score=203.80 Aligned_cols=229 Identities=10% Similarity=0.063 Sum_probs=177.0
Q ss_pred CCceEEEEEcCCCCeEEEEeC-CCeEEEEecCCCCceeEEeecCC-cceEEEEEcCCCCcEEEEEeC---CCcEEEEECC
Q 004737 492 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 566 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~h~-~~V~sl~fspdg~~llaSgs~---Dg~I~iWDl~ 566 (732)
..+|++++|+|||++||+++. ||+++||+++.+. .+.+..|. ..+..+.|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999996543 44555555 68999999998 57767664 4445555443
Q ss_pred C---CeeeeEEeccCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C--
Q 004737 567 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 639 (732)
Q Consensus 567 t---~~~i~~~~~~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-- 639 (732)
. +... .+.........+|+|+++. +++...++.+.+||+.+++.......+ . .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3333345667789998865 445555666779999998766555433 2 7899999999999776 5
Q ss_pred --CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEccCCCCeeEEE----
Q 004737 640 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA---- 711 (732)
Q Consensus 640 --g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~~~~~h~~~V~sla---- 711 (732)
..|++||+.++.. ..+..+...+..++|+|||++|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCCC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCCc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 5899999988632 25566778899999999999999888888 89999999988876667777777777
Q ss_pred ----EeCCCCEEEEEECCCeEEEeC
Q 004737 712 ----ASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 712 ----~spdg~~LaSgs~DG~I~IWD 732 (732)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=3e-18 Score=203.87 Aligned_cols=266 Identities=13% Similarity=0.073 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc-----eEEEEEcCCCCeEEEEeCC---------CeE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 516 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---------g~I 516 (732)
....++.|+|||++|+++ |+.|++||+.+++....+.+|... ...+.|+|||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888777643 2448899999999999876 566
Q ss_pred EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cc------------------
Q 004737 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQ------------------ 577 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~------------------ 577 (732)
.+||+.+++ ...+..|...+..++|+|||+.++++ . ++.|++||+.+++...... ..
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999865 34567778889999999999877655 3 7899999998877554322 11
Q ss_pred CCeeEEEEeCCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEc
Q 004737 578 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ 616 (732)
Q Consensus 578 ~~i~~v~~sp~g~~ll~~s~dg------------------------------------~I~IwDl~t---~~--~i~~l~ 616 (732)
.....+.|+|||++|+.+..|. .|++||+.+ +. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123489999999998876321 588899998 72 223333
Q ss_pred ------CCCCCEEEEEEeCCCCEEEEEe--C---CeEEEEECCCCCC------ceeEEEeecCCCceE-----EEEEeCC
Q 004737 617 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHPT 674 (732)
Q Consensus 617 ------~h~~~V~sla~spdg~~Lasgs--D---g~I~IWDl~t~~~------~~~i~~~~~~~~~I~-----sl~fspd 674 (732)
+|...+..++|+|||++++... + ..|++||+.++.. ...+. ...+...+. ...|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence 3777899999999999776654 2 2799999988751 11111 123444433 6789999
Q ss_pred CCEEE-EEEcC-C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737 675 FPSLL-VIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 675 g~~L~-sgs~d-g--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~ 724 (732)
|+.|+ ..+.. | .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 99877 56543 3 799999998887777666666766553 44665555443
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=2.1e-17 Score=179.75 Aligned_cols=278 Identities=10% Similarity=0.095 Sum_probs=203.3
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCCeEEEEeccC----
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH---- 491 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h---- 491 (732)
|..+.+||..++... ..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+.++...
T Consensus 30 d~~v~v~D~~t~~~~---~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFL---GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GCEEEEEETTTCCEE---EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred cCeEEEEECCCCeEE---EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 456777777776543 445555554 8999999999998863 578999999999988887532
Q ss_pred --CCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737 492 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 492 --~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
......++|+|||++|+++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 345678999999999998874 58999999998653 444 33 22 223466788876777788889999999986
Q ss_pred C-CeeeeEE------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC------CC----CCEEEEEE
Q 004737 567 N-GSCAGVF------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCW 627 (732)
Q Consensus 567 t-~~~i~~~------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~------h~----~~V~sla~ 627 (732)
. ++..... ........+.+.+++..++..+.++.|+++|+.... .+..+.. +. .....++|
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 5 5544221 111222334446777788888889999999997543 2222211 11 11113789
Q ss_pred eCCCCEEEEEe------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 628 NTSGEYLASVS------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 628 spdg~~Lasgs------------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
+|++..++++. ++.|.+||+.+. +.+..+..+. ...++|+|++++|++++. +.|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99988777653 237999999987 7788877666 999999999999888876 99999999999
Q ss_pred --eEEEE-ccCCCCeeEEEEeCCCC
Q 004737 696 --KTLTL-SAHDKLVSSLAASTVNG 717 (732)
Q Consensus 696 --~~~~~-~~h~~~V~sla~spdg~ 717 (732)
+.+.. ..+......++++|+|+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 88844 57888899999999985
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=4.5e-18 Score=189.91 Aligned_cols=212 Identities=14% Similarity=0.158 Sum_probs=159.5
Q ss_pred CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC---------ceeE-----EeecCCcc
Q 004737 472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 537 (732)
Q Consensus 472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~---------~~~~-----~l~~h~~~ 537 (732)
+.|++|+... . .....+..+++++++.++++++.|+ |+||+..... .... ....+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4678876431 1 2344689999999999999999887 8998754210 0011 11235678
Q ss_pred eEEEEEcCCCCcEEE---EEeCCCcEEEEECCCC--------eeeeEEe----ccCCeeEEEEeCC-CCEEEEEEcCCeE
Q 004737 538 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 601 (732)
Q Consensus 538 V~sl~fspdg~~lla---Sgs~Dg~I~iWDl~t~--------~~i~~~~----~~~~i~~v~~sp~-g~~ll~~s~dg~I 601 (732)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999866665 7888999999998654 2222222 3567999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------CCceEEEEEeC
Q 004737 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 673 (732)
Q Consensus 602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------~~~I~sl~fsp 673 (732)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778899999999999999999999 9999999998 3 233333322 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEECCCC
Q 004737 674 TFPSLLVIG-CYE------TLELWNMTEN 695 (732)
Q Consensus 674 dg~~L~sgs-~dg------~I~IwDl~t~ 695 (732)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 988775543 332 4999999764
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=1.5e-17 Score=194.17 Aligned_cols=281 Identities=10% Similarity=0.052 Sum_probs=197.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEEcCCCeEEEEeccCCCceE---------EEEEc--CCCCe-EEEE
Q 004737 445 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 510 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasg--s~Dg~I~VWd~~t~~~~~~l~~h~~~V~---------~l~fs--pdg~~-Lasg 510 (732)
.+.+|...|..++|++++-++++. +.++...||....+.....+..|...+. .+.|+ |||++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788999999999887667766 5578999999655555667777766666 66676 99998 7766
Q ss_pred eC-CCeEEEEecC--C-CCceeEEeec-----CCcceEEEEEcCCCCcEEEEEeCC---------CcEEEEECCC-----
Q 004737 511 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 567 (732)
Q Consensus 511 s~-Dg~I~IWDl~--s-~~~~~~~l~~-----h~~~V~sl~fspdg~~llaSgs~D---------g~I~iWDl~t----- 567 (732)
+. +..|.+|++. . +. ...+.. |...+.+++|+|||+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5567777765 2 32 344544 667889999999997777555421 5899999988
Q ss_pred -CeeeeEE-eccCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEEcCCCCCEEEEEEeCCCCE
Q 004737 568 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 633 (732)
Q Consensus 568 -~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~-t~---~~i~~l~~h~~~V~sla~spdg~~ 633 (732)
++..... .....+..++|+|+|++|++++.+ ..|++||+. ++ +.......|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5554444 334557788999999999988865 379999999 56 444444446788999999999997
Q ss_pred EEEEe-CC--eEEEEECCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEE
Q 004737 634 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 700 (732)
Q Consensus 634 Lasgs-Dg--~I~IWDl~t~~~~~~i~~~~~~~~~--------I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~~~ 700 (732)
++++. ++ .|.+||+.++. .......+... +..++|++++.+++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 77 66667765542 22211211111 457899999998888888 877777 7777777677
Q ss_pred ccCCCCeeEE-EEeCCCCEEEEEECCCeEEEe
Q 004737 701 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 701 ~~h~~~V~sl-a~spdg~~LaSgs~DG~I~IW 731 (732)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7787788877 554433344455666555555
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1e-16 Score=174.37 Aligned_cols=263 Identities=8% Similarity=0.057 Sum_probs=189.6
Q ss_pred CCCEEEEEE------CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC----------CCeEEEEecCCC
Q 004737 461 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 524 (732)
Q Consensus 461 dg~~Lasgs------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~s~ 524 (732)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||++++++++. +++|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666554 3679999999999999888776655 8999999999999863 678999999876
Q ss_pred CceeEEeec------CCcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-EeccCCeeEEEEeCCC-CEEEEE
Q 004737 525 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 595 (732)
Q Consensus 525 ~~~~~~l~~------h~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~-~~~~~~i~~v~~sp~g-~~ll~~ 595 (732)
+. +..+.. +......++|+|+++.++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 63 444432 23456789999999877766554 68999999999988877 5543 33335677765 577888
Q ss_pred EcCCeEEEEECCC-CeEEEE------EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC----
Q 004737 596 AIENYISILDVET-QVCRLK------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 663 (732)
Q Consensus 596 s~dg~I~IwDl~t-~~~i~~------l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~---- 663 (732)
+.||.+.+|++.. ++.... +..+..++ .+.+++++..++..+ ++.|.+||+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8999999999865 554422 11222222 334467777777666 88999999975432 2222221100
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737 664 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 664 ------~~I~sl~fspdg~~L~sgs~-----------dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~D 725 (732)
.....++|+|++..++++.. .+.|.+||+.+++.+ ++..+. +.+++|+||+++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11123689999998888764 348999999999988 555555 999999999999998886
Q ss_pred CeEEEeC
Q 004737 726 KCVKIWK 732 (732)
Q Consensus 726 G~I~IWD 732 (732)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999997
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=7.2e-17 Score=191.90 Aligned_cols=289 Identities=14% Similarity=0.068 Sum_probs=195.6
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCeEEEEeccC
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEH 491 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~-----V~~lafSpdg~~Lasgs~D---------g~I~VWd~~t~~~~~~l~~h 491 (732)
|..+++|+..++.. ...+.+|... ...++|||||++|+.++.+ +.+.|||+.+++.. .+..|
T Consensus 35 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI 110 (740)
T ss_dssp TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC
T ss_pred CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccC
Confidence 45788899888854 3446666643 2448899999999998876 56679999998865 46677
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce-----------------EEEEEcCCCCcEEEEE
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSC 554 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-----------------~sl~fspdg~~llaSg 554 (732)
...+..++|+|||+.||.+. |+.|++||+.++.....+..++...+ ..+.|+|||+.+++..
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 88899999999999999984 78999999987664322333333322 3589999998777654
Q ss_pred eCCC-----------------------------------cEEEEECCC---Ce---eeeEEe------ccCCeeEEEEeC
Q 004737 555 DNNS-----------------------------------EIRYWSINN---GS---CAGVFK------CQSGATQMRFQP 587 (732)
Q Consensus 555 s~Dg-----------------------------------~I~iWDl~t---~~---~i~~~~------~~~~i~~v~~sp 587 (732)
.+++ .|++||+.+ ++ ...... ....+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 3222 588899988 73 322221 223378899999
Q ss_pred CCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--cCCCCCEE-----EEEEeCCCCEEE-EEe--CC--eEEEE
Q 004737 588 RLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVCWNTSGEYLA-SVS--DE--LVRVW 645 (732)
Q Consensus 588 ~g~~ll~~s~d----g~I~IwDl~t~~----~i~--~l--~~h~~~V~-----sla~spdg~~La-sgs--Dg--~I~IW 645 (732)
+++.++..... ..|.+||+.+++ +.. .+ ..|...|. .++|+|||+.|+ ..+ +| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 98866665442 379999998876 321 11 34555554 789999999876 665 44 78999
Q ss_pred ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCCCeEE-EEcc----CCCCeeEEEEe
Q 004737 646 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTENKTL-TLSA----HDKLVSSLAAS 713 (732)
Q Consensus 646 Dl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-------g~I~IwDl~t~~~~-~~~~----h~~~V~sla~s 713 (732)
|+.++. + ..+......+..+.. ++++.|+..+.. ..|+..++..+... .+.. ....+..+.|+
T Consensus 350 ~~~~~~---~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S 424 (740)
T 4a5s_A 350 QIDKKD---C-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFS 424 (740)
T ss_dssp ETTCSS---C-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEEC
T ss_pred ECCCCc---e-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEEC
Confidence 987652 2 233333445555442 447666666654 25666676665543 3321 23578899999
Q ss_pred CCCCEEEEEEC
Q 004737 714 TVNGMVASASH 724 (732)
Q Consensus 714 pdg~~LaSgs~ 724 (732)
|++++++....
T Consensus 425 ~dg~~~~~~~s 435 (740)
T 4a5s_A 425 KEAKYYQLRCS 435 (740)
T ss_dssp TTSSEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 99997665543
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=3.7e-16 Score=167.15 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=181.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 504 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~D------------------------g~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg 504 (732)
-+.|.+++++++|+++++...+ +.|.+||..+++.+..+. ++-..+..++|++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888777 479999999998887664 445678999999999
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEe---------ecCCcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEE
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 574 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l---------~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~ 574 (732)
+++++...++.|++||.......+..+ .++-.....|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 234457899999995456776775 689999999 457776666
Q ss_pred ecc-----------CCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEE---
Q 004737 575 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 637 (732)
Q Consensus 575 ~~~-----------~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasg--- 637 (732)
... ..+..++++|+++.++++. .++.|++||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 422 2278899999955555554 57899999999888888774 4567889999999 3333322
Q ss_pred ----e-CCeEEEEECCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 638 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 638 ----s-Dg~I~IWDl~t~~~~~~i~~~---~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
. +..|++||+.++ ..+..+ ..+......++++|+|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 555555 34566789999999996666666778999998754
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=3.8e-16 Score=166.61 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=178.2
Q ss_pred CeEEEEEcCCCCEEEEEE---------CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---C--eEE
Q 004737 452 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 517 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g--~I~ 517 (732)
.|..++| ||++++... .++.|.+||+.+++... + ..+..++|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3667777 888887642 25689999999887543 3 568899999999999988754 3 477
Q ss_pred EEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC--------------------------CCcEEEEECCCCeee
Q 004737 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 571 (732)
Q Consensus 518 IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~--------------------------Dg~I~iWDl~t~~~i 571 (732)
+||+.++. ...+..+.. +..+.|+|+++.+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~--~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLS--SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTE--EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCc--eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 77887654 233333334 9999999999877766532 257999999988874
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C--
Q 004737 572 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 639 (732)
Q Consensus 572 ~~~~~~~~i~~v~~sp~g~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-- 639 (732)
..+... .+..+.|+|++ .++++..+. .|.++| +++.. .+..+ ..+..+ +|+|++|+.++ +
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 78899999998 666665432 455556 55443 33334 455544 99999887766 3
Q ss_pred ------CeEEEEECCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEE
Q 004737 640 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 712 (732)
Q Consensus 640 ------g~I~IWDl~t~~~~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~ 712 (732)
..|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2677777 33 333333344567776 8999 88 88888999999999 877776666667888999999
Q ss_pred eCCCCEEEEEECCCeE-EEe
Q 004737 713 STVNGMVASASHDKCV-KIW 731 (732)
Q Consensus 713 spdg~~LaSgs~DG~I-~IW 731 (732)
++ .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 678888777654 555
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=4.3e-16 Score=165.58 Aligned_cols=267 Identities=8% Similarity=0.044 Sum_probs=192.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347888999998888777888999999 4566677777777889999999999888888899999999987653 333
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEc------
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 597 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~D----g~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~------ 597 (732)
...+...+.+++|++++. ++++...+ +.|.+||..++.....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999974 55555555 689999998876553332 2245889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCC-CCCceeE-----EEeecCCCceEEE
Q 004737 598 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 669 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t-~~~~~~i-----~~~~~~~~~I~sl 669 (732)
.+.|..||..+++..... .+...+..++|+|++++|+.+. ++.|.+||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 356777887765543322 2334688999999998666554 78999999964 2211111 11111 1467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCC------CeeEEEEeCCCCEEEEEECC
Q 004737 670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK------LVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~------~V~sla~spdg~~LaSgs~D 725 (732)
++++++..+++...++.|.+||.. ++.+ .+..+.. .+.+++|+++++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999977777777899999985 4444 4433322 68999999998777766655
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=3.5e-15 Score=155.17 Aligned_cols=238 Identities=10% Similarity=0.155 Sum_probs=175.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec------cCCCceEEEEE-cCCCCeEEEEeC-CCeEEE
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRV 518 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~------~h~~~V~~l~f-spdg~~Lasgs~-Dg~I~I 518 (732)
.+|-..+.+++++++++++++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566779999999999988888889999999987 56666653 24457899999 467766666543 889999
Q ss_pred EecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEE
Q 004737 519 WDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA 594 (732)
Q Consensus 519 WDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~ 594 (732)
||. ++.. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+.. ...+..+++++++..+++
T Consensus 105 ~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 105 YNQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp ECT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred ECC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 994 3443 44443 3446789999999974 66677778899999965 555655542 235789999999776555
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCC--CceEE
Q 004737 595 AAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHS 668 (732)
Q Consensus 595 ~s~dg~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~~~--~~I~s 668 (732)
...++.|++||.. ++.+..+..+ ...+..|+++++|+++++.. ++ .|.+||.. + ..+..+..+. ..+..
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFD 255 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCccee
Confidence 5668999999985 4555556433 36789999999999888877 65 99999964 3 3444444332 34789
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 669 CVFHPTFPSLLVIGCYETLELWNMTEN 695 (732)
Q Consensus 669 l~fspdg~~L~sgs~dg~I~IwDl~t~ 695 (732)
++++|++..+++ +.++.|++|++...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999975554 77899999998653
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=1.9e-14 Score=165.65 Aligned_cols=300 Identities=11% Similarity=0.010 Sum_probs=217.1
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEc--
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFS-- 501 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fs-- 501 (732)
+..+.++|..++.....+ .. ...+.++.|+|||+++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i---~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVL---DT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEE---EC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEE---eC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 345666777666544333 32 2357799999999999999999999999996 888888887544 46799999
Q ss_pred --CCCCeEEEEeC-CCeEEEEecCCCCceeEEeec----------CCc-ceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 502 --PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 502 --pdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~----------h~~-~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
|||+++++++. ++.|.|||..+.+. +..+.- |.. .+..+.+++++..+++....+|.|.++|...
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~ 329 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 329 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence 69999887765 58999999988663 443321 222 5788899998888888888889999999987
Q ss_pred Ceeee--EEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-----CCCCEEEEEEeCCC-CEEEEEe
Q 004737 568 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSG-EYLASVS 638 (732)
Q Consensus 568 ~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-----h~~~V~sla~spdg-~~Lasgs 638 (732)
.+.+. .+........+.|+|++++++++.. ++.|.++|+.+++.+..+.. |.+.-..+ ++|++ .+++++.
T Consensus 330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~ 408 (567)
T 1qks_A 330 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH 408 (567)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC
Confidence 54333 3333445778999999999888775 68999999999988776653 33222222 57874 4555554
Q ss_pred --CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECCCC-----e-E-E
Q 004737 639 --DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMTEN-----K-T-L 698 (732)
Q Consensus 639 --Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-------dg~I~IwDl~t~-----~-~-~ 698 (732)
++.|.++|..+... .+.+..+...+..-..+.++|+++++++... .+.|.+||+.+. . . .
T Consensus 409 ~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~ 488 (567)
T 1qks_A 409 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK 488 (567)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcE
Confidence 68999999987332 3566777655444455778999999998763 359999999876 2 1 1
Q ss_pred EEc--------cCCCCeeEEEEeCCCCEEEEEEC-----CCeEEEeC
Q 004737 699 TLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 732 (732)
Q Consensus 699 ~~~--------~h~~~V~sla~spdg~~LaSgs~-----DG~I~IWD 732 (732)
.+. .....+..+.|+++|++++.+.. ++.|.|+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 489 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 121 12457899999999998777643 68888875
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=5.2e-15 Score=153.85 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=171.8
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee------cCCcceEEEEEc-CCCCcEEEEEeC-CCcEE
Q 004737 490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFH-PSKEDLLCSCDN-NSEIR 561 (732)
Q Consensus 490 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~------~h~~~V~sl~fs-pdg~~llaSgs~-Dg~I~ 561 (732)
++-..+.++++++++.++++...++.|.+||... . .+..+. ++...+..+++. ++ ..++++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~-~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R-FKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-C-EEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-c-EEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEE
Confidence 4556789999999999888888899999999873 3 244442 244578899995 55 456655543 78999
Q ss_pred EEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEE
Q 004737 562 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV 637 (732)
Q Consensus 562 iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasg 637 (732)
+|| .+++.+..+... ..+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+|+++++++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 557766666432 458899999998866666668899999965 45555553 345678999999999977776
Q ss_pred e-CCeEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEccCC--CCeeEEE
Q 004737 638 S-DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLA 711 (732)
Q Consensus 638 s-Dg~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~~~~~h~--~~V~sla 711 (732)
. ++.|++||... ..+..+... ...+..+++++++..+++...++ .|.+||........+..+. ..+.+++
T Consensus 182 ~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~ 257 (286)
T 1q7f_A 182 NRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA 257 (286)
T ss_dssp GGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred CCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence 6 88999999753 344455433 25788999999998777766675 9999996544333444433 3478999
Q ss_pred EeCCCCEEEEEECCCeEEEeC
Q 004737 712 ASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 712 ~spdg~~LaSgs~DG~I~IWD 732 (732)
++++++++++ +.|+.|+||+
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEE
T ss_pred ECCCCcEEEE-CCCCeEEEEE
Confidence 9999987776 6799999995
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=3.1e-16 Score=169.80 Aligned_cols=258 Identities=11% Similarity=0.100 Sum_probs=176.7
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE--cCCCC
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLS 505 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f--spdg~ 505 (732)
.+.+|+..++. ......+|...+.+++|+|||++|+.++.++.|++||+.+++....+..+...+....| +++++
T Consensus 61 ~l~~~d~~~g~---~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~ 137 (388)
T 3pe7_A 61 NYYLLDLNTQV---ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT 137 (388)
T ss_dssp EEEEEETTTCE---EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred eEEEEeCCCCc---eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC
Confidence 34556666653 23445567666767899999999999999999999999999888777767666655444 89999
Q ss_pred eEEEEe----------------------CCCeEEEEecCCCCceeEEeecCCcceEEEEEcC-CCCcEEEEEeC-----C
Q 004737 506 RLATSS----------------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----N 557 (732)
Q Consensus 506 ~Lasgs----------------------~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fsp-dg~~llaSgs~-----D 557 (732)
+++... .+..|.+||+.++. ...+..+...+..+.|+| ++..++++... .
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVD 215 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCc
Confidence 887532 44789999999865 455556677899999999 88766655542 3
Q ss_pred CcEEEEECCCCeeeeEEeccC--CeeEEEEeCCCCEEEEEEc-CC----eEEEEECCCCeEE--EEEcCCCCC---EEEE
Q 004737 558 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCR--LKLQGHKNQ---VHSV 625 (732)
Q Consensus 558 g~I~iWDl~t~~~i~~~~~~~--~i~~v~~sp~g~~ll~~s~-dg----~I~IwDl~t~~~i--~~l~~h~~~---V~sl 625 (732)
..|.+||+..++......... .+..+.|+|+++.|+..+. ++ .|++||+.+++.. ..+.++... ...+
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 295 (388)
T 3pe7_A 216 ARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS 295 (388)
T ss_dssp CSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred ceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence 478888987665443333332 3667899999998866554 22 3999999988643 333321000 1123
Q ss_pred EEeCCCCEEEEE---------e-CCeEEEEECCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-
Q 004737 626 CWNTSGEYLASV---------S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC- 683 (732)
Q Consensus 626 a~spdg~~Lasg---------s-Dg~I~IWDl~t~~~~~~i~~~~~~~~-----------~I~sl~fspdg~~L~sgs~- 683 (732)
+|+|||+.|+.. . +..|++||+.++. +..+..+.. .+..++|+|||+.|++++.
T Consensus 296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp EEEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred eEccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 799999887753 2 5589999998862 233333443 4778899999998887775
Q ss_pred CC--eEEEEECCC
Q 004737 684 YE--TLELWNMTE 694 (732)
Q Consensus 684 dg--~I~IwDl~t 694 (732)
++ .|+++++.+
T Consensus 372 ~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 372 HGKPALYLATLPE 384 (388)
T ss_dssp TSSCEEEEEECCG
T ss_pred CCceeEEEEECCh
Confidence 44 455555543
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=3.4e-16 Score=182.77 Aligned_cols=266 Identities=10% Similarity=0.040 Sum_probs=178.6
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeE---------EEEEc--CCCCE-EEEEEC-CCcEEEEEcC--CCeEEEEecc--
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVE---------SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-- 490 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~---------~lafS--pdg~~-Lasgs~-Dg~I~VWd~~--t~~~~~~l~~-- 490 (732)
..++|....+. ....+..|...|. .+.|+ |||++ |+.++. +..|.+|++. .......+..
T Consensus 48 ~~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 48 RATLVRRRADG---AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp EEEEEEECTTS---CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred cEEEEEECCCC---CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 45666643332 2345666666666 66665 99998 776654 5667777765 2033445555
Q ss_pred ---CCCceEEEEEcCCCCeEEEEeCC----------CeEEEEecCCCC----ceeEEee-cCCcceEEEEEcCCCCcEEE
Q 004737 491 ---HTQWITDVRFSPSLSRLATSSAD----------RTVRVWDTENPD----YSLRTFT-GHSTTVMSLDFHPSKEDLLC 552 (732)
Q Consensus 491 ---h~~~V~~l~fspdg~~Lasgs~D----------g~I~IWDl~s~~----~~~~~l~-~h~~~V~sl~fspdg~~lla 552 (732)
|...+.+++|+|||+.|++++.| ..|++||+.+.. .....+. .+...+..++|+|||+.+++
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~ 204 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVW 204 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEE
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEE
Confidence 67789999999999999998877 589999998720 1234555 56678889999999987775
Q ss_pred EEeCC-------CcEEEEECC-CC---eeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEEcCC
Q 004737 553 SCDNN-------SEIRYWSIN-NG---SCAGVFKC-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGH 618 (732)
Q Consensus 553 Sgs~D-------g~I~iWDl~-t~---~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg--~I~IwDl~t~~~i~~l~~h 618 (732)
+.... ..|++||+. ++ +....... ...+..+.|+|++..++++..++ .|++||+.+++.......+
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 284 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE 284 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence 55432 479999999 56 44444443 46788999999999666666677 6777887777655433333
Q ss_pred CCC--------EEEEEEeCCCCEEEEEeCCeEEEE--ECCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC--
Q 004737 619 KNQ--------VHSVCWNTSGEYLASVSDELVRVW--SIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE-- 685 (732)
Q Consensus 619 ~~~--------V~sla~spdg~~LasgsDg~I~IW--Dl~t~~~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg-- 685 (732)
... +.+++|++++++++++.++.++|| |+.++ .+..+..+...+..+ .++.+.-.+++.+.+.
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCC
Confidence 222 567899999998888776777888 55443 355666666667766 4443332233333333
Q ss_pred eEEEEECCCCeEEEE
Q 004737 686 TLELWNMTENKTLTL 700 (732)
Q Consensus 686 ~I~IwDl~t~~~~~~ 700 (732)
.|++||+.+++...+
T Consensus 361 ~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 361 EVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred EEEEEECCCCceEEe
Confidence 677778888876644
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.72 E-value=9.2e-14 Score=144.04 Aligned_cols=274 Identities=9% Similarity=-0.035 Sum_probs=194.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
+..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999987776667899999988 554432 23355779999999999988877778899999986 3
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
......+......+.++++.+++ .++++...++.|.+||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 32222222345578999999986 56656666789999998 555443221 224588999999987666555678999
Q ss_pred EEECCCCeEEEE-EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 603 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 603 IwDl~t~~~i~~-l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
+||. +++.... +......+.++++++++.++++.. ++.|.+||. ++.. ...........+..+++++++..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456789999999999777665 789999998 5421 11223334567899999999985544
Q ss_pred EEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 681 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 681 gs~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4554433 345578999999 8887776655444443
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=2.9e-15 Score=159.80 Aligned_cols=251 Identities=16% Similarity=0.155 Sum_probs=171.6
Q ss_pred CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---C--cEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRF 500 (732)
Q Consensus 426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g--~I~VWd~~t~~~~~~l~~h~~~V~~l~f 500 (732)
+..+.+|+...+.. ..+ ..+.+++|||||++||.++.+ + .|.+||+.+++.......+ . +..++|
T Consensus 42 ~~~l~~~d~~~~~~----~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNAR----RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCE----EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEE
T ss_pred cceEEEEeCCCCce----EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeE
Confidence 44566677766642 122 468899999999999887754 2 4888899888776555433 3 999999
Q ss_pred cCCCCeEEEEeCC---------------------------CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEE
Q 004737 501 SPSLSRLATSSAD---------------------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 553 (732)
Q Consensus 501 spdg~~Lasgs~D---------------------------g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaS 553 (732)
+||++.|+.++.+ ..|.+||+.++.. +..+.. . .+..+.|+|++ ++++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEE
Confidence 9999999888642 5789999987653 234443 3 78999999998 6656
Q ss_pred EeCCC-------cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCC
Q 004737 554 CDNNS-------EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGH 618 (732)
Q Consensus 554 gs~Dg-------~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h 618 (732)
+..+. ...+|.+.+++....... ..+. .++|+|++|++++.+ ..|++|| +++.......+
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred EecccccccccccccEEEeCCCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 65432 334443335655444433 3333 349999998888754 3688888 56555445556
Q ss_pred CCCEEE-EEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCC
Q 004737 619 KNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTEN 695 (732)
Q Consensus 619 ~~~V~s-la~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I-~IwDl~t~ 695 (732)
...+.. +.|+ ++ +++++. ++.++|| +.++ .. ..+..+...|.+++|+| ..+++++.++.. .+|.+. +
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g 331 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-G 331 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-S
T ss_pred CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C
Confidence 778886 9999 88 777777 8899999 8743 33 23334467899999999 667777777643 666665 6
Q ss_pred eEEEEccCCCC
Q 004737 696 KTLTLSAHDKL 706 (732)
Q Consensus 696 ~~~~~~~h~~~ 706 (732)
+...+..|...
T Consensus 332 ~~~~lt~~n~~ 342 (347)
T 2gop_A 332 EEKQLTDYNDP 342 (347)
T ss_dssp SEEECCCTTST
T ss_pred cEEEeccccHh
Confidence 65566666543
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=2.7e-14 Score=151.68 Aligned_cols=245 Identities=13% Similarity=0.116 Sum_probs=176.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----CeEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVR 517 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~ 517 (732)
.+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 345566777889999999999988888889999999999887766554566789999999999888877666 6899
Q ss_pred EEecCCCCceeEEee--cCCcceEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC
Q 004737 518 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 589 (732)
Q Consensus 518 IWDl~s~~~~~~~l~--~h~~~V~sl~fspdg~~llaSgs~------Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g 589 (732)
+||.++.... ..+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|++
T Consensus 116 ~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 116 AATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9999876542 2222 2445789999999975 4445442 356777777665554444434567889999999
Q ss_pred CEEEEEE-cCCeEEEEECCC-CeEEE--------EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737 590 GRILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 590 ~~ll~~s-~dg~I~IwDl~t-~~~i~--------~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~ 658 (732)
+.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|+++++.. ++.|.+||.. + ..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~ 268 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ 268 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence 8776665 478999999964 22111 11222 4678899999999887776 7899999984 3 34444
Q ss_pred eecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEECC
Q 004737 659 LSCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 693 (732)
Q Consensus 659 ~~~~~~------~I~sl~fspdg~~L~sgs~dg------~I~IwDl~ 693 (732)
+..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 443332 588999999988888777663 45555543
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.2e-15 Score=159.88 Aligned_cols=234 Identities=10% Similarity=0.069 Sum_probs=172.6
Q ss_pred CCceEEEEEcCCCCeEEEEeCC------------------------CeEEEEecCCCCceeEEee-cCCcceEEEEEcCC
Q 004737 492 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 546 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~D------------------------g~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspd 546 (732)
-+.+.+|+++++|+++++...+ +.|.+||..+++. ...+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 3579999999999998888777 4799999987764 33332 44567899999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCe-eeeEEec----------cCCeeEEEEeC-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 004737 547 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 613 (732)
Q Consensus 547 g~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~----------~~~i~~v~~sp-~g~~ll~~s-~dg~I~IwDl~t~~~i~ 613 (732)
+. ++++...++.|++||..... .+..+.. -..+..++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 76 77677788999999986542 4444421 12478899999 555555554 589999999 5566666
Q ss_pred EEcC----------CCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 004737 614 KLQG----------HKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 679 (732)
Q Consensus 614 ~l~~----------h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~--~~~~~I~sl~fspdg~~L~ 679 (732)
.+.. +-.....|+++|+ +.++++.. ++.|++||..++ +.+..+. .+...+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 6542 2234899999999 55555555 789999999866 5555553 3556788999999 33222
Q ss_pred EE-------EcCCeEEEEECCCCeEEEE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 680 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 680 sg-------s~dg~I~IwDl~t~~~~~~----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+. ..+..|++||..+++.+.. ..+...+.+|++++++.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999998844 35777899999999998888888899999985
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.70 E-value=2.7e-15 Score=177.49 Aligned_cols=245 Identities=8% Similarity=-0.019 Sum_probs=176.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe-------
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 515 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~------- 515 (732)
+|...+..++|||||++||.+..++ .|+|||+.+++.+.....+. .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3444688999999999998776543 89999999998876432222 2678999999999999988766
Q ss_pred ---------EEEEecCCCCce-eEEee--cCCcceEEEEEcCCCCcEEEEEeC----CCcEEEEECCC------Ce-eee
Q 004737 516 ---------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG 572 (732)
Q Consensus 516 ---------I~IWDl~s~~~~-~~~l~--~h~~~V~sl~fspdg~~llaSgs~----Dg~I~iWDl~t------~~-~i~ 572 (732)
|++|++.++... ...+. .|...+..+.|+|+|+.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876532 22223 245568899999999888766642 56899999986 42 234
Q ss_pred EEeccCCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe--EEEEEcCCCC--CEEEEEEeCCCCEEEEEe-CC--e
Q 004737 573 VFKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L 641 (732)
Q Consensus 573 ~~~~~~~i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~--~i~~l~~h~~--~V~sla~spdg~~Lasgs-Dg--~ 641 (732)
.+..+.......|+++++.|++.+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++.. |+ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 44433322234588999988887764 369999998763 1233334433 688899997777777777 77 5
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCe
Q 004737 642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 696 (732)
Q Consensus 642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~ 696 (732)
|.+||+.++ ..+..+..+...+..+.++|++..+++.... +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 677787665 4556666667778889999999777655433 589999998876
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.3e-14 Score=151.97 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=177.4
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737 445 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 523 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s 523 (732)
.+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3445666788999999998 7788888999999999887 566666778899999999999888777778999999977
Q ss_pred CCceeEEeecC----CcceEEEEEcCCCCcEEEE----Ee-------------CCCcEEEEECCCCeeeeEEeccCCeeE
Q 004737 524 PDYSLRTFTGH----STTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQ 582 (732)
Q Consensus 524 ~~~~~~~l~~h----~~~V~sl~fspdg~~llaS----gs-------------~Dg~I~iWDl~t~~~i~~~~~~~~i~~ 582 (732)
+... ...... ...+..++++|+|. ++++ +. ..+.|..|+.. ++.............
T Consensus 100 g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 100 GEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp CCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 6632 221111 23467899999975 5545 22 13456666665 554444444455788
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECC-CCeE---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE
Q 004737 583 MRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg~I~IwDl~-t~~~---i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~ 658 (732)
++|+|+++.+++.+.++.|.+||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+..
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~~ 251 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELGR 251 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEEE
Confidence 9999999988555567899999997 4544 23333355667889999999977777 8899999986 3 55666
Q ss_pred eecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 659 LSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 659 ~~~~~~~I~sl~f-spdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
+..+.. +.+++| .|+++.|++++.+ .|+.++.++.++.
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 666666 889999 5899988888775 5777777766543
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.68 E-value=1.8e-14 Score=154.27 Aligned_cols=251 Identities=10% Similarity=0.027 Sum_probs=187.2
Q ss_pred CCCcEEEEEcCCCeEEEEec------cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEE
Q 004737 470 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 543 (732)
Q Consensus 470 ~Dg~I~VWd~~t~~~~~~l~------~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~f 543 (732)
.++.|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+.+. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998776542 122346778874 345555666679999999998774 45554 3466889999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC------CeeEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 004737 544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 615 (732)
Q Consensus 544 spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~------~i~~v~~sp~g~~ll~~s--~dg~I~IwDl~t~~~i~~l 615 (732)
++++ .++++...++.|.+||..+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8886 666566578999999999999888777655 5667777 456777776 3789999999999888877
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEe-C----------CeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 004737 616 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 683 (732)
Q Consensus 616 ~~h~~~V~sla~spdg~~Lasgs-D----------g~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~ 683 (732)
... .....++++++|++++++. + +.|.+||..+. +....+... ......++|+|++++|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 3457899999999777765 4 68999999876 444444432 346899999999998888765
Q ss_pred CCeEEEEECCCCeEEE--Ecc-CCCCeeEEEEeCCC-CEEEEE----ECCCeEEEeC
Q 004737 684 YETLELWNMTENKTLT--LSA-HDKLVSSLAASTVN-GMVASA----SHDKCVKIWK 732 (732)
Q Consensus 684 dg~I~IwDl~t~~~~~--~~~-h~~~V~sla~spdg-~~LaSg----s~DG~I~IWD 732 (732)
.|++||..+++... +.. +......++++|++ .++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887641 111 24678999999954 455554 4688999986
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=2.4e-15 Score=162.65 Aligned_cols=258 Identities=9% Similarity=0.036 Sum_probs=173.7
Q ss_pred eeeeeecCCCceeEEEEEecCCCCC-eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEE---------
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD--------- 497 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~-V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~--------- 497 (732)
.+.+|+...+.. ..+..+... +.++.|+|||++|+.++.++.|++||+.+++....+..+......
T Consensus 61 ~l~~~d~~~~~~----~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 136 (396)
T 3c5m_A 61 NYYLLNLETQQA----VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC 136 (396)
T ss_dssp EEEEEETTTTEE----EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS
T ss_pred eEEEEECCCCcE----EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC
Confidence 445566666532 223333333 344889999999999999999999999998876666555544333
Q ss_pred ----------EEEcCCCCeEEEE-----eCCCeEEEEecCCCCceeEEeecCCcceEEEEEcC-CCCcEEEEEeCC----
Q 004737 498 ----------VRFSPSLSRLATS-----SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN---- 557 (732)
Q Consensus 498 ----------l~fspdg~~Lasg-----s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fsp-dg~~llaSgs~D---- 557 (732)
+.|+|+++.++.+ ..+..|.+||+.++.. ..+..+...+..+.|+| ++..++++....
T Consensus 137 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 137 TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp SEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred CccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCC
Confidence 4567888877654 3567899999987653 33345677899999999 665565554322
Q ss_pred -CcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737 558 -SEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 558 -g~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~h~~~V~sla~sp 629 (732)
..|++||+..++........ ..+..+.|+|+++.|++++.+ +.|++||+.+++...... .. ... +.|+|
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~ 291 (396)
T 3c5m_A 215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSN 291 (396)
T ss_dssp SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEEC
T ss_pred CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccC
Confidence 46999998766543333321 136778999999988777654 449999999886544332 11 233 89999
Q ss_pred -CCCEEEEEe-----------------CCeEEEEECCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEE
Q 004737 630 -SGEYLASVS-----------------DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLV 680 (732)
Q Consensus 630 -dg~~Lasgs-----------------Dg~I~IWDl~t~~~~~~i~~~~~~~~-----------~I~sl~fspdg~~L~s 680 (732)
+|++|+++. +..|++||+.++.. .. +..+.. .+..++|+|+++.|++
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EE---ccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence 999888743 36899999987642 22 222222 2556789999998888
Q ss_pred EEcC-C--eEEEEECCCCeEE
Q 004737 681 IGCY-E--TLELWNMTENKTL 698 (732)
Q Consensus 681 gs~d-g--~I~IwDl~t~~~~ 698 (732)
++.. + .|+++++.++...
T Consensus 368 ~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 368 TSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp EECTTSSCEEEEEECCTTCC-
T ss_pred EecCCCCceEEEEEEcccccc
Confidence 7764 3 5666777766554
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=4.4e-14 Score=147.87 Aligned_cols=238 Identities=9% Similarity=0.080 Sum_probs=171.8
Q ss_pred eEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 483 TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 483 ~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.+++|++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33445555667789999999998 7788888999999999875 455666777899999999975 565666678999
Q ss_pred EEECCCCeeeeEEec-----cCCeeEEEEeCCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEcCCC
Q 004737 562 YWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHK 619 (732)
Q Consensus 562 iWDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~ll~~----s-------------~dg~I~IwDl~t~~~i~~l~~h~ 619 (732)
+||..+++....... ...+..++++++|..+++. + ..+.|..||.. ++. ..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 999988876544322 1245679999998877763 2 13467777766 443 3344566
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCeEEEEECC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 620 NQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 697 (732)
Q Consensus 620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~-t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~ 697 (732)
.....++|+|++++|++.. ++.|++|++. ++........+......+..++++++|..+++. ++.|.+||.. ++.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE 248 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence 7789999999999985555 7899999997 332101122223344556789999999855444 7899999987 544
Q ss_pred E-EEccCCCCeeEEEE-eCCCCEEEEEECCCeEEE
Q 004737 698 L-TLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 730 (732)
Q Consensus 698 ~-~~~~h~~~V~sla~-spdg~~LaSgs~DG~I~I 730 (732)
+ .+..+.. +++++| .++++.|++++.++.+++
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 4 5666666 999999 588899999888875554
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=2.5e-13 Score=156.36 Aligned_cols=265 Identities=11% Similarity=0.064 Sum_probs=194.9
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC--CCCceeEEeecCCcc
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 537 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~--s~~~~~~~l~~h~~~ 537 (732)
+++.++++...++.|.|||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+ .+..+.... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-~v~~i~~G~-~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKIGS-E 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEECCS-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-EeEEEecCC-C
Confidence 34456677778899999999999999888644 357799999999999999999999999995 554 344554333 4
Q ss_pred eEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------------CCeeEEEEeCCCCEEEEEEc-CCe
Q 004737 538 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 600 (732)
Q Consensus 538 V~sl~fs----pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~ll~~s~-dg~ 600 (732)
...++|+ |+|+.++++...++.|.+||..+.+.+..+... ..+..+.+++++..+++... .|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699999988888999999999999988876632 14677888888776665554 589
Q ss_pred EEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec-----CCCceEEEEE
Q 004737 601 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 671 (732)
Q Consensus 601 I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~-----~~~~I~sl~f 671 (732)
|.++|....+. +..+. ......++.|+|++++|+++. ++.|.+||+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 22332 345678899999999998877 789999999987 44443332 2221222 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EEccCCCCeeEEEEeCCCCEEEEEEC-------CCeEEEeC
Q 004737 672 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 732 (732)
Q Consensus 672 spdg~~L~sgs--~dg~I~IwDl~t-------~~~~-~~~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IWD 732 (732)
+|++..+++.+ .++.|.++|..+ .+.+ ++......-..+.++|++++|+.... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88865565554 457999999987 5555 44433333355778999999888663 34787775
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=4.5e-14 Score=151.09 Aligned_cols=280 Identities=8% Similarity=-0.040 Sum_probs=193.6
Q ss_pred CCceeeeeecCCCceeEEEEE-ec--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737 425 RDRVGRSAEVGKGFTFTEFQL-IP--ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501 (732)
Q Consensus 425 ~d~~~r~wd~~~g~~~~~v~~-l~--~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs 501 (732)
.+..+.++|..++.....+.. .. .......++++. +++++++...++.|.+||..+++.+.++. .......++|+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 356777777777643222100 01 122446778874 44455666667999999999999988885 34668999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCC-----cceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEe
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~-----~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~~ 575 (732)
++++.+++...++.|.+||..+.+. ...+.... .....+++ ++..++++.. .++.|.+||+.+++.+..+.
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 8885444444899999999998663 33333222 14566777 3456665654 48899999999999988888
Q ss_pred ccCCeeEEEEeCCCCEEEEEEcC----------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCeEEE
Q 004737 576 CQSGATQMRFQPRLGRILAAAIE----------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRV 644 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~d----------g~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~LasgsDg~I~I 644 (732)
.......++++++++.++++..+ +.|.+||..+++....+... ......++|+|++++|+++.. .|.+
T Consensus 170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~ 248 (328)
T 3dsm_A 170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWR 248 (328)
T ss_dssp CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEE
T ss_pred cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEE
Confidence 76778889999998765555444 78999999999887766532 346899999999998887655 8999
Q ss_pred EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-----cCCeEEEEECCCCeEEEEccCCCCeeEEEE
Q 004737 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 712 (732)
Q Consensus 645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-----~dg~I~IwDl~t~~~~~~~~h~~~V~sla~ 712 (732)
||..++.... ...+.........++++|++..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 249 ~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 249 MPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 9998764311 111111245688999999655566665 56799999998 776633223334455665
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=3.5e-15 Score=176.11 Aligned_cols=246 Identities=10% Similarity=0.012 Sum_probs=170.9
Q ss_pred CCCCCeEEEEEcCCCCEEEE-----EECCCcEEEEEcCCCeEEEEeccCCCce--EEEEEcCCCCeEEEEeCCCe-----
Q 004737 448 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 515 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Las-----gs~Dg~I~VWd~~t~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~Dg~----- 515 (732)
+|...+.+++|||||++||. |+.+..|+|||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 46667899999999999984 3445789999999988641 1122222 68899999999999998876
Q ss_pred --------EEEEecCCCCce---eEEeecCCcceEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEEeccCCee
Q 004737 516 --------VRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 581 (732)
Q Consensus 516 --------I~IWDl~s~~~~---~~~l~~h~~~V~sl~fspdg~~llaSgs~D-g--~I~iWDl~t~~~i~~~~~~~~i~ 581 (732)
|++|++.++... +.....|...+..+.|+|+|+.++++...+ + .|++||..+++..........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 999999876532 222334556789999999998887666543 2 67777776665555554445556
Q ss_pred EEEEeCCCCEEEEEEc----CCeEEEEECCCCeE---EEEEcCC-CCCEEEEEEeCCCCEEEEEe-CCeEEEEECC-CCC
Q 004737 582 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 651 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~----dg~I~IwDl~t~~~---i~~l~~h-~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~-t~~ 651 (732)
...+ +++. +++.+. ++.|.+||+.++.. ...+..+ ...|..++|+ ++.++++.. |+..+||.+. ++
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 655554 57899999987642 3333333 4568889998 666777766 8877777654 22
Q ss_pred CceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEEc
Q 004737 652 KGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 701 (732)
Q Consensus 652 ~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~~~~~~ 701 (732)
.....+..+ ...+..+.++|++..+++...+ +.|++||+.+++...+.
T Consensus 352 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 --KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp --CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred --CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344455444 5567778899999877755433 48999999988765444
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=1.2e-12 Score=135.72 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=192.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
+......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34456679999999999988877778999999988 55443 233344679999999999887777668899999988 5
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.+++..+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222332346789999998864 55566667889999987 554422 11 234588899999988555544578999
Q ss_pred EEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 603 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 603 IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
+||. +++... ....+...+.++++++++.++++.. .+.|.+||. ++. ............+.++++++++..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 454333 2333456789999999998777666 668999998 332 112223334566889999999985544
Q ss_pred EEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 681 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 681 gs~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
...++.|.+||. +++...+ ......+.++++++++.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 4554433 33456789999999988666554 4 55544
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=8.2e-14 Score=142.96 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=167.6
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 452 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 452 ~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
...+++++++|++++ +...++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578999999999777 446789999999776544332233445688999999998666555 88999999876442 22
Q ss_pred ee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 531 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 608 (732)
Q Consensus 531 l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t 608 (732)
+. .....+..+++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999875 66666668899999876544332221 223578899999987555555678999999987
Q ss_pred CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737 609 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 687 (732)
Q Consensus 609 ~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I 687 (732)
.........+...+.+|+++++|.++++.. ++.|.+||..... ...........+..+++++++..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777666 7799999987642 221111223568999999999877777778899
Q ss_pred EEEECCCCe
Q 004737 688 ELWNMTENK 696 (732)
Q Consensus 688 ~IwDl~t~~ 696 (732)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987653
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.5e-13 Score=162.53 Aligned_cols=268 Identities=8% Similarity=-0.012 Sum_probs=182.4
Q ss_pred CCCCEEEEEECCC-----cEEEEEcCCCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCCC-----eEEEEecCC
Q 004737 460 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 523 (732)
Q Consensus 460 pdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg-----~I~IWDl~s 523 (732)
|||++++....++ .|.+.+...++....+ .+|...+..++|+|||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877654332 3444454444433222 23445688999999999998876543 899999998
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc----------------EEEEECCCCeee--eEEec---cCCeeE
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 582 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~----------------I~iWDl~t~~~i--~~~~~---~~~i~~ 582 (732)
+......+.. ..+..++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEEE--ECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCcccccC--cccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 7643222222 23678999999887776654 433 999999887632 22222 223678
Q ss_pred EEEeCCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC---eEEEE
Q 004737 583 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW 645 (732)
Q Consensus 583 v~~sp~g~~ll~~s~-----dg~I~IwDl~t------~~-~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg---~I~IW 645 (732)
+.|+|++++|++++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988876 56899999986 42 34555556666655 4888988777665 22 69999
Q ss_pred ECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEE
Q 004737 646 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 720 (732)
Q Consensus 646 Dl~t~~~~~~i~~~~~~~~--~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~La 720 (732)
|+.++... ....+..+.. .+..+.|++++.++++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333333 678899997777777777787 5778888677654 6666777889999999987655
Q ss_pred EE-E---CCCeEEEeC
Q 004737 721 SA-S---HDKCVKIWK 732 (732)
Q Consensus 721 Sg-s---~DG~I~IWD 732 (732)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 3 346787775
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.62 E-value=1.2e-13 Score=150.69 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=193.2
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEe
Q 004737 456 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 520 (732)
Q Consensus 456 lafSpdg~~Lasgs~-----Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWD 520 (732)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||++++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455689998888765 679999999999999998765555 4 99999999988876 367899999
Q ss_pred cCCCCceeEEee-cC------CcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE
Q 004737 521 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 521 l~s~~~~~~~l~-~h------~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l 592 (732)
..+.+. +..+. +. ......+.|+|||+.++++.. .++.|.++|+.+++.+..+...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998764 44432 21 124667999999988887664 378999999999999998875442 23333344677
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEcCC----CCCEE-EEEEe-CCCCEEEEEeCCeEEEEECCCCCCceeEEEee-----
Q 004737 593 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS----- 660 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t-~~~i~~l~~h----~~~V~-sla~s-pdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~----- 660 (732)
++.+.||.+.++++.+ ++.......+ ..++. ...|. ++|++++...+|.|+++|+.+... ..+..+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 7888999999999986 5543322111 12222 24664 678777766689999999976532 1222221
Q ss_pred -----cCCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-
Q 004737 661 -----CTGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 723 (732)
Q Consensus 661 -----~~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs- 723 (732)
.....+..++++++++.+++... ...|.++|+.+++.+....-...++.|+|++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 01122335778999999988754 2479999999999984444445789999999997 777655
Q ss_pred CCCeEEEeC
Q 004737 724 HDKCVKIWK 732 (732)
Q Consensus 724 ~DG~I~IWD 732 (732)
.++.|.|+|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588999886
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=2.2e-12 Score=140.93 Aligned_cols=267 Identities=9% Similarity=0.007 Sum_probs=185.1
Q ss_pred EEcCCCCEEEEEEC--CC---cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEec
Q 004737 457 HFSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDT 521 (732)
Q Consensus 457 afSpdg~~Lasgs~--Dg---~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl 521 (732)
...|++++++++.. .. .|.+||..+++.+.++.....+ .++|+||+++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34467777766653 22 8899999999999888755544 999999999999886 3678999999
Q ss_pred CCCCceeEEeecC-------CcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-EeccCCeeEEEEeCCC-CE
Q 004737 522 ENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GR 591 (732)
Q Consensus 522 ~s~~~~~~~l~~h-------~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~-~~~~~~i~~v~~sp~g-~~ 591 (732)
.+.+. +..+.-. ......+.|+|+|+.++++... ++.|.++| .+++.+.. +..... +.+.+++ ..
T Consensus 105 ~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPST 179 (373)
T ss_pred CCCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCce
Confidence 87653 3333211 1234689999999888866643 57899999 99988877 654332 4455555 34
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-----CCCCCE-EEEEEeCCCCEE-EEEeCCeEEEEECCCCCCceeEEEeec---
Q 004737 592 ILAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSC--- 661 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~~~i~~l~-----~h~~~V-~sla~spdg~~L-asgsDg~I~IWDl~t~~~~~~i~~~~~--- 661 (732)
+++.+.||.+.++|. +++...... ....++ ....+.+++..+ +...++.+.+.|+..... ..+..+..
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~ 257 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSG 257 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCC
Confidence 566777999999999 776653321 112222 234566665544 334478999999975421 22222211
Q ss_pred -------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE
Q 004737 662 -------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS 723 (732)
Q Consensus 662 -------~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs 723 (732)
.......+.++|+++.+++... .+.|.++|+.+++.+..........+++|+||++ +++++.
T Consensus 258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence 1122445789999998888764 3479999999999884444555789999999999 788877
Q ss_pred -CCCeEEEeC
Q 004737 724 -HDKCVKIWK 732 (732)
Q Consensus 724 -~DG~I~IWD 732 (732)
.++.|.|||
T Consensus 338 ~~~~~V~ViD 347 (373)
T 2mad_H 338 AGTEVLHIYD 347 (373)
T ss_pred CCCCeEEEEE
Confidence 489999986
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=1.7e-13 Score=140.56 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=164.0
Q ss_pred ceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737 494 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 572 (732)
Q Consensus 494 ~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~ 572 (732)
...++++++++++++ +...++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998776 446789999999875442 111123335688999999875 555555 8899999987654332
Q ss_pred EE-eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737 573 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 573 ~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
.. .....+..+++++++..+++...++.|.+||..+.............+.+|+++++++++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1224588999999987666556678999998766544333223334678999999999777666 789999998765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
. ...........+..+++++++..+++...++.|.+||.......... .+...+.+++++++++++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223366889999999965555556779999999776544332 3346789999999999888888899999
Q ss_pred EeC
Q 004737 730 IWK 732 (732)
Q Consensus 730 IWD 732 (732)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=1.7e-12 Score=136.01 Aligned_cols=238 Identities=10% Similarity=0.094 Sum_probs=168.6
Q ss_pred CCCCCeEEEEEcCCCCEEEE-------EECCCcEEEEEcCCCeEEEEec----cCCCceEEEEEcCC-CCeEEEEeCCCe
Q 004737 448 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT 515 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Las-------gs~Dg~I~VWd~~t~~~~~~l~----~h~~~V~~l~fspd-g~~Lasgs~Dg~ 515 (732)
..-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.+..
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 34445789999999988887 5678999999988877653322 24467899999999 654444 44557
Q ss_pred EEEEecCCCCceeEEe-ec-----CCcceEEEEEcCCCCcEEEEEeCC---------------CcEEEEECCCCeeeeEE
Q 004737 516 VRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVF 574 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l-~~-----h~~~V~sl~fspdg~~llaSgs~D---------------g~I~iWDl~t~~~i~~~ 574 (732)
|.+||.+ ++. ..+ .. ....+.++++++++. ++++...+ +.|..||.. ++.....
T Consensus 94 l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred EEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 9999988 543 222 11 124588999999975 44454433 567788776 6555444
Q ss_pred eccCCeeEEEEe----CCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEcCCC-CCEEEEEEeCCCCEEEEEe-CCe
Q 004737 575 KCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DEL 641 (732)
Q Consensus 575 ~~~~~i~~v~~s----p~g~~ll~~s-~dg~I~IwDl~-t~~-----~i~~l~~h~-~~V~sla~spdg~~Lasgs-Dg~ 641 (732)
........++|+ ++++.++++. .++.|.+||+. +++ ....+..+. ..+..++++++|.++++.. ++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 444567889999 9987776665 47899999986 443 223333343 5688999999999888876 789
Q ss_pred EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 004737 642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 694 (732)
Q Consensus 642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t 694 (732)
|.+||..++ ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus 249 i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998765 333444455577999999999996666654 56899999865
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=8.7e-13 Score=137.96 Aligned_cols=241 Identities=10% Similarity=0.056 Sum_probs=178.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC-Ccce
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 538 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V 538 (732)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +++ .+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 46789999999999999999999999998776 5789999999999888 45788999999 566 45556554 3578
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-------CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737 539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 611 (732)
Q Consensus 539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-------~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~ 611 (732)
.++.+.++|..+++.++.++.|..+|. +++.+..+.... ....+++.++++++++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998666644433677888886 677777665322 24456788999999988889999999998 998
Q ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 004737 612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~------~~I~sl~fspdg~~L~sgs~d 684 (732)
+.++... ..+.++.+.+++.+++++. ++.|..||..++ +.+.++.... ..+..+...++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 8888754 4566788889999998888 668999999887 5555554321 237888899999866665311
Q ss_pred --------CeEEEEEC-CCCeEE-EEccC--CCCeeEEE
Q 004737 685 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA 711 (732)
Q Consensus 685 --------g~I~IwDl-~t~~~~-~~~~h--~~~V~sla 711 (732)
+..+++++ .+++.+ .+..+ -+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23456666 466665 44332 34566554
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.6e-11 Score=134.11 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=180.4
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccC------
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------ 491 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h------ 491 (732)
.+.++|..++.. +..++....+ .++|+|||++|+++. .++.|.+||..+++.+..+...
T Consensus 48 ~v~v~D~~t~~~---~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSGSI---LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCCeE---EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 455666666543 3344443444 899999999998886 3678999999999888776432
Q ss_pred -CCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 492 -TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 492 -~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
......++|+|||++|++++. ++.|.++| .+++. +.. +. .. .|+.+.|++...+++.+.||.+.+||. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 123568999999999999874 47899999 87653 444 33 11 235666777777778888999999999 8
Q ss_pred CeeeeEEe-----c-cCC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC----------CCCCEEEEEEe
Q 004737 568 GSCAGVFK-----C-QSG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWN 628 (732)
Q Consensus 568 ~~~i~~~~-----~-~~~-i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~----------h~~~V~sla~s 628 (732)
++...... . ... .....+.++++.++..+.++.+.++|+.... .+..+.- .......++++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 77663322 1 111 1234567777777766788999999997652 2222211 12234457899
Q ss_pred CCCCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCC
Q 004737 629 TSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTEN 695 (732)
Q Consensus 629 pdg~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~t~ 695 (732)
++++.+++.. ++.|.++|+.+. +.+..+. .......++|+||++ .++++. .++.|.+||+.++
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9988777754 247999999887 6666664 344689999999999 677766 4789999999999
Q ss_pred eEEEE
Q 004737 696 KTLTL 700 (732)
Q Consensus 696 ~~~~~ 700 (732)
+.+..
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 98844
No 199
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.56 E-value=2.2e-13 Score=161.88 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=166.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe--------
Q 004737 449 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 515 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-------- 515 (732)
|...+..++|||||++||.++.+ ..|+|||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999887654 46999999999876532 12222357899999 99998887654
Q ss_pred ------EEEEecCCCCce-eEEee--cCCcceEEEEEcCCCCcEEEEEeC----CCcEEEEECCCC--eeeeEEe-ccCC
Q 004737 516 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 579 (732)
Q Consensus 516 ------I~IWDl~s~~~~-~~~l~--~h~~~V~sl~fspdg~~llaSgs~----Dg~I~iWDl~t~--~~i~~~~-~~~~ 579 (732)
|++|++.++... ...+. .+...+..+.|+|||+.+++++.. ...|++||+.++ ++...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999776532 22232 233458899999999887766653 348999999877 4133333 3333
Q ss_pred eeEEEEeCCCCEEEEEEcC----CeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECC-CCC
Q 004737 580 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 651 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~-t~~ 651 (732)
+... ++++++.|++.+.+ +.|.+||+.++ .....+..+...+..++|+ ++.++++.. |+..+||.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889999888764 45999999884 3444445455567778887 555666666 8876666554 22
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEE
Q 004737 652 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 700 (732)
Q Consensus 652 ~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~----dg~I~IwDl~t~~~~~~ 700 (732)
.....+.. ....+..+.++|++..|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34445543 3567888999999876664433 24899999998875544
No 200
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=2.3e-13 Score=160.50 Aligned_cols=268 Identities=12% Similarity=-0.004 Sum_probs=172.7
Q ss_pred cCCCCEEEEEECCC---c--EEEEEcCCCeEEEEec------cCCCceEEEEEcCCCCeEEEE-----eCCCeEEEEecC
Q 004737 459 SPDGKLLATGGHDK---K--AVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 522 (732)
Q Consensus 459 Spdg~~Lasgs~Dg---~--I~VWd~~t~~~~~~l~------~h~~~V~~l~fspdg~~Lasg-----s~Dg~I~IWDl~ 522 (732)
+|+|++++....++ . |.+.+...++....+. +|...+..++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37898887766543 2 4444544554433332 455679999999999999844 345689999999
Q ss_pred CCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCc-------------EEEEECCCCee--eeEEec---cCCeeEE
Q 004737 523 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 583 (732)
Q Consensus 523 s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~-------------I~iWDl~t~~~--i~~~~~---~~~i~~v 583 (732)
++... ...+.. .....++|+|||+.++++. .|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111111 1126899999987776554 4444 99999988763 222222 2357889
Q ss_pred EEeCCCCEEEEEEcCC----eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCcee
Q 004737 584 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 655 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg----~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~ 655 (732)
.|+|+|++|++++.++ .|++||..++... .+..+...+....| +++.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998888766 7888877665433 33345556666667 5555444443 35899999987632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEEccC-CCCeeEEEEeCCCCEEEEEE----CCCe
Q 004737 656 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 727 (732)
Q Consensus 656 i~~~~~~-~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~~~~~h-~~~V~sla~spdg~~LaSgs----~DG~ 727 (732)
...+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ ...|..++++++++.|+... ..+.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223222 4567888888 66777778888866666 4433333344444 66788889999987666332 3467
Q ss_pred EEEeC
Q 004737 728 VKIWK 732 (732)
Q Consensus 728 I~IWD 732 (732)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.5e-11 Score=125.52 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=167.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE-EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 526 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~ 526 (732)
.+...+.+++++++|.++++...++.|..||.. ++. ...+......+.++++.+++.++++...++.|.+||. ++..
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 455779999999999988877778899999986 333 2222334567899999999988887777889999998 4443
Q ss_pred eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISIL 604 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw 604 (732)
.......+...+..+++.+++ .++++...++.|.+||. +++.... .. ....+..+++++++..+++...++.|.+|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 322333345678999999987 55656666789999999 6665432 11 22457889999998765555557899999
Q ss_pred ECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737 605 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 605 Dl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs 682 (732)
|. +++... .+..+...+.+++++++|.++++.. ++.|.+||.. +. .....+......+.++++ +++. |+++.
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~ 283 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI--IEEYPIQIKSAEPHGICF-DGET-IWFAM 283 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE--EEEEECSSSSCCEEEEEE-CSSC-EEEEE
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc--eEEEeCCCCCCccceEEe-cCCC-EEEEe
Confidence 99 665433 2333556899999999999777664 7899999983 31 111122334567899999 8887 45555
Q ss_pred cCCeEEEEECCCCe
Q 004737 683 CYETLELWNMTENK 696 (732)
Q Consensus 683 ~dg~I~IwDl~t~~ 696 (732)
..+.|..++..+++
T Consensus 284 ~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 ECDKIGKLTLIKDN 297 (299)
T ss_dssp TTTEEEEEEEC---
T ss_pred cCCcEEEEEcCccc
Confidence 56788888876654
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=3.9e-12 Score=133.25 Aligned_cols=238 Identities=8% Similarity=-0.017 Sum_probs=163.7
Q ss_pred CCCceEEEEEcCCCCeEEE-------EeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 491 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 491 h~~~V~~l~fspdg~~Las-------gs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
.-....+++|++++.++++ +..++.|.+||..+++...... .++...+.++++++++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445789999999987777 5678999999987766422111 124567899999998335554444 4479
Q ss_pred EEEECCCCeeeeE-Eec-----cCCeeEEEEeCCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEcCCC
Q 004737 561 RYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGHK 619 (732)
Q Consensus 561 ~iWDl~t~~~i~~-~~~-----~~~i~~v~~sp~g~~ll~~s~d---------------g~I~IwDl~t~~~i~~l~~h~ 619 (732)
.+||.. ++.... ... ...+..+++++++..+++...+ +.|..||.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 999998 665433 221 1247899999998776666554 578888876 5443332 234
Q ss_pred CCEEEEEEe----CCCCEEEEEe--CCeEEEEECC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 620 NQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 620 ~~V~sla~s----pdg~~Lasgs--Dg~I~IWDl~-t~~~--~~~i~~~~~~~-~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
.....++|+ ++++.|+.+. ++.|.+||+. ++.. ...+..+..+. .....++++++|..+++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457899999 9997666554 7899999986 3311 01223333333 56788999999987777777889999
Q ss_pred EECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737 690 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 732 (732)
Q Consensus 690 wDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD 732 (732)
||..+++.+ .+..+...+.+++|++++++|+.++ .++.|..|+
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 999866554 4445667899999999999555544 567787764
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=3.2e-12 Score=139.37 Aligned_cols=275 Identities=11% Similarity=0.105 Sum_probs=185.6
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccCC----
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT---- 492 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~---- 492 (732)
..+.+.|..++.....+. ....+ . ++++|||++|+++. .++.|.+||..+++.+.++....
T Consensus 59 ~~V~ViD~~t~~v~~~I~---vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMID---GGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp EEEEEEETTTTEEEEEEE---ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CEEEEEECCCCeEEEEEE---CCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 355566666665544443 33334 3 99999999887765 36789999999999988875321
Q ss_pred ---CceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 493 ---QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 493 ---~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
.....++|+|||++++++.. ++.|.|+|+.+.+. +..+.-.. |..+.|.+...+++.+.||.+.+.++.+
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCC
Confidence 24567999999999998874 68999999998764 44443211 2233455555565777799999999976
Q ss_pred -CeeeeEEe-cc----CCe-eEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEc---------C-CCCCEEEEEEe
Q 004737 568 -GSCAGVFK-CQ----SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWN 628 (732)
Q Consensus 568 -~~~i~~~~-~~----~~i-~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~---------~-h~~~V~sla~s 628 (732)
++...... .. ..+ ....|.+..+.++..+.+|.|+++|+.+.. .+..+. + ..+.+..++++
T Consensus 209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 55432111 10 111 124665434566667778999999997653 322221 0 12233457789
Q ss_pred CCCCEEEEEe--C---------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCC
Q 004737 629 TSGEYLASVS--D---------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTEN 695 (732)
Q Consensus 629 pdg~~Lasgs--D---------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs~-dg~I~IwDl~t~ 695 (732)
++++.++... + +.|.++|+.+. +.+..+.. +..++.|.|++|++ +|+++.. ++.|.++|..++
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9988887764 1 47999999988 55555543 34688999999996 6666554 789999999999
Q ss_pred eEEEEccCCCCeeEEEEeCC
Q 004737 696 KTLTLSAHDKLVSSLAASTV 715 (732)
Q Consensus 696 ~~~~~~~h~~~V~sla~spd 715 (732)
+.+......+..+.|.+++|
T Consensus 365 k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 365 EELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp CEEEEECCCCSSCCEEEECC
T ss_pred cEEEEecCCCCCceeEECCc
Confidence 99855555555666777766
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=3e-12 Score=141.77 Aligned_cols=266 Identities=8% Similarity=0.045 Sum_probs=187.2
Q ss_pred CCCCEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEecCCC
Q 004737 460 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 524 (732)
Q Consensus 460 pdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl~s~ 524 (732)
++++.+++.... +.|.++|..+++.+.++.....+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766655542 69999999999999999766555 899999999988886 3678999999987
Q ss_pred CceeEEee-c------CCcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEE
Q 004737 525 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 595 (732)
Q Consensus 525 ~~~~~~l~-~------h~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~ 595 (732)
+. +..+. + .......+.|+||+++++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 74 44432 2 12345678999999888766543 68899999999999988875432 3334433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----cCCCCCE-EEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--------
Q 004737 596 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 661 (732)
Q Consensus 596 s~dg~I~IwDl~t~~~i~~l----~~h~~~V-~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-------- 661 (732)
+.||.+.+.+..+++..... .....++ ..+.|.+++..++... ++.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 78898888888666544321 1111221 2356788888777666 78999999865421 11111110
Q ss_pred --CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCe
Q 004737 662 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 727 (732)
Q Consensus 662 --~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~ 727 (732)
.......+++++++.++++... .+.|.++|+.+.+.+....-....+.++|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111223689999998888753 3479999999999884333334689999999999 888888 5899
Q ss_pred EEEeC
Q 004737 728 VKIWK 732 (732)
Q Consensus 728 I~IWD 732 (732)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2.3e-12 Score=153.17 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=170.8
Q ss_pred CCCCEEEEEECCCc---EEEEE--cC---CCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEe
Q 004737 460 PDGKLLATGGHDKK---AVLWC--TE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWD 520 (732)
Q Consensus 460 pdg~~Lasgs~Dg~---I~VWd--~~---t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWD 520 (732)
|||++++....++. ..||. .. .++....+ .+|...+..++|+|||++||.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 89998877664432 45554 43 33333222 2344468899999999999887654 4699999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-------------cEEEEECCCCee--eeEEeccC---CeeE
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQS---GATQ 582 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-------------~I~iWDl~t~~~--i~~~~~~~---~i~~ 582 (732)
+.+++. +.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+.... .+..
T Consensus 196 l~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 998774 222 212223467899999 77776654332 399999987653 22333222 3788
Q ss_pred EEEeCCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C----CeEEEEECCCC
Q 004737 583 MRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSG 650 (732)
Q Consensus 583 v~~sp~g~~ll~~s~dg-----~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg~~Lasgs-D----g~I~IWDl~t~ 650 (732)
+.|+|+|++|++.+.++ .|++||+.++ ++...+..+...+.... +|+|..|+..+ + +.|.+||+.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999999998887654 8999999877 31445555555555554 48888887766 2 35999998774
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEEcc-CCCCeeEEEEeCCCCEEE-EEE---
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS--- 723 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~~~~~-h~~~V~sla~spdg~~La-Sgs--- 723 (732)
. ......+..+...+..+.|+ ++..+++...++..+|| ++..+....+.. +...|..++++++++.|+ +.+
T Consensus 352 ~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 352 T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 2 12333334444556677787 55667777778865555 554443334443 467789999999987555 322
Q ss_pred CCCeEEEeC
Q 004737 724 HDKCVKIWK 732 (732)
Q Consensus 724 ~DG~I~IWD 732 (732)
..+.|++||
T Consensus 430 ~P~~i~~~d 438 (741)
T 1yr2_A 430 QPATVLALD 438 (741)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 346787775
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.48 E-value=6.6e-12 Score=131.21 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=162.7
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CC
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SG 579 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~ 579 (732)
.+++|++++.|+.|.+||.++++. +..+..+. ..+.++.+.|+|+ ++++ .++.|..||. +++.+..+... ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-VWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-EEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-EEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 457899999999999999988774 56666555 4789999999975 5543 3778999999 79999888864 35
Q ss_pred eeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC
Q 004737 580 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 651 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~ 651 (732)
+.++.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|.+|++.. ++.|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 778899999999998887 788888886 6666665541 222455677899999999888 8999999987 6
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC------CCeeEEEEeCCCCEEEEEE
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~------~~V~sla~spdg~~LaSgs 723 (732)
+.+..+... .....+.+.+++..++++..++.|..||..+++.+ .+..+. ..+..+...+++.++++..
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 556565543 45567788999998888888889999999989887 443321 2378888889998888763
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.47 E-value=8.8e-11 Score=123.31 Aligned_cols=228 Identities=10% Similarity=0.034 Sum_probs=157.1
Q ss_pred eccCCCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737 488 LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 488 l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
+..+.....+..|++++ .++++...++.|..||..++.. ..+ .....+.++++++++. ++++ . +..|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 44455567789999964 4556666789999999987653 223 2456799999999987 4433 3 5679999999
Q ss_pred CCeeeeEEecc-----CCeeEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737 567 NGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 567 t~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~d-----------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spd 630 (732)
+++........ ..+..+++++++..+++...+ +.|+.+|.. ++... +..+....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 88765444321 236789999998866544332 345555543 33322 2223455789999999
Q ss_pred CCEEEEEe--CCeEEEEECC--CCCC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC
Q 004737 631 GEYLASVS--DELVRVWSIG--SGSK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 703 (732)
Q Consensus 631 g~~Lasgs--Dg~I~IWDl~--t~~~--~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h 703 (732)
++.|+.+. ++.|.+||+. ++.. ...+..+.........++++++|..+++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99776665 7899999974 4421 1223333334456789999999986666667778999999988877 55556
Q ss_pred CCCeeEEEEe-CCCCEEEEEE
Q 004737 704 DKLVSSLAAS-TVNGMVASAS 723 (732)
Q Consensus 704 ~~~V~sla~s-pdg~~LaSgs 723 (732)
...+++++|. |+++.|+.++
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEeCCCCCEEEEEc
Confidence 6789999998 8887666554
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.46 E-value=3.7e-11 Score=132.79 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=161.3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCee
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 570 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~ 570 (732)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999999777777789999999987543 233333 33334 99999986555 444444 799999876654
Q ss_pred eeEE----e-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE----EcCCCCCE--EEEEEeCCCCEEEEEe-
Q 004737 571 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS- 638 (732)
Q Consensus 571 i~~~----~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~----l~~h~~~V--~sla~spdg~~Lasgs- 638 (732)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++...- ..++|+|++..|+.+.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4443 2 234578899999777787777788999999987754332 22222222 3999999655555554
Q ss_pred -CCeEEEEECCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEc
Q 004737 639 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 701 (732)
Q Consensus 639 -Dg~I~IWDl~t~~~~~~i~~~~~~---------------~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~ 701 (732)
++.|+.|+.... +..+.+. -.....++|++++.++++-. .++.|+.|++.++...++.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 779999987643 1222221 13478899999999555555 5779999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 702 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 702 ~h---------------~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
++ -.....+++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468999999998777777777888765
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.3e-10 Score=118.29 Aligned_cols=236 Identities=9% Similarity=0.002 Sum_probs=165.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
..+...+.++++.++|+++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +.
T Consensus 58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence 3445679999999999887777667899999988 5543 2233344678999999999888877778899999987 44
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.....+......+.++++.+++. ++++...++.|.+||. +++... +.. ...+..+++.+++..+++....+.|.
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred EEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 32222333456789999999875 6656666788999998 555443 322 23578899999876555555567899
Q ss_pred EEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 603 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 603 IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
+||. ++.... .+..+...+.+++++++|+++++.. ++.|.+||.. +. .....+......+.+++++++|. |++
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v 287 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWF 287 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEE
T ss_pred EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEE
Confidence 9998 444333 3334556789999999998766665 6899999983 31 12222333345688899999998 444
Q ss_pred EEcCCeEEEEECC
Q 004737 681 IGCYETLELWNMT 693 (732)
Q Consensus 681 gs~dg~I~IwDl~ 693 (732)
++.. .|..+|..
T Consensus 288 ~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 288 ALKC-KIGKLNLN 299 (300)
T ss_dssp ECSS-EEEEEEEC
T ss_pred EccC-ceEEeCCC
Confidence 4444 77777753
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.3e-10 Score=121.93 Aligned_cols=229 Identities=13% Similarity=0.112 Sum_probs=158.0
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737 447 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
..+..-..+..|++++. ++++...++.|..||..+++.. .+ .....+.+++|+++++++++ . +..|.+||.+++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 33444566899999654 5566667899999999887653 33 24567999999999995554 4 5689999998765
Q ss_pred ceeEEeec-----CCcceEEEEEcCCCCcEEEEEeC--------CCcEEEEECCC-CeeeeEEeccCCeeEEEEeCCCCE
Q 004737 526 YSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGR 591 (732)
Q Consensus 526 ~~~~~l~~-----h~~~V~sl~fspdg~~llaSgs~--------Dg~I~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ 591 (732)
. ..+.. ....+..++++|+|..++.+... .....+|.+.. ++.............++|+|+++.
T Consensus 85 ~--~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 A--VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp E--EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred E--EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence 3 22221 12357889999998644433221 12234454432 444433443455778999999988
Q ss_pred EEEEEc-CCeEEEEEC--CCCeE-----EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737 592 ILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 662 (732)
Q Consensus 592 ll~~s~-dg~I~IwDl--~t~~~-----i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~ 662 (732)
++++.. ++.|.+||+ .++.. ...+..+...+..++++++|.++++.. ++.|.+||..++ +.+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence 776655 689999987 45432 223333446788999999998877776 678999999877 566677666
Q ss_pred CCceEEEEEe-CCCCEEEEEEcC
Q 004737 663 GNKFHSCVFH-PTFPSLLVIGCY 684 (732)
Q Consensus 663 ~~~I~sl~fs-pdg~~L~sgs~d 684 (732)
...+++++|. |+++.|++++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 6789999998 888888877754
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=5.6e-12 Score=148.74 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=167.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--------
Q 004737 448 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------- 514 (732)
Q Consensus 448 ~H~~~V~~lafSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-------- 514 (732)
+|...|..++|||||++||.+. .+..|+|||+++++.+.... +......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3555688899999999988543 23579999999998654311 11113567899 999999998874
Q ss_pred -----eEEEEecCCCCcee-EEe--ec-CCcceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCe-eeeEEecc-CCe
Q 004737 515 -----TVRVWDTENPDYSL-RTF--TG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKCQ-SGA 580 (732)
Q Consensus 515 -----~I~IWDl~s~~~~~-~~l--~~-h~~~V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~~-~i~~~~~~-~~i 580 (732)
.|++|++.++...- ..+ .. |...+..+.|+||++.++++...+ ..|++||+.++. ....+... ...
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 39999998765322 222 22 444578899999999888776533 589999998763 23333332 333
Q ss_pred eEEEEeCCCCEEEEEEcC----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCC
Q 004737 581 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 650 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~ 650 (732)
... ++++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++||+...
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 77777887776653 5799999987643 234455655554 8899999888776 55 7899998743
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEE
Q 004737 651 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 700 (732)
Q Consensus 651 ~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~~~~~ 700 (732)
....+.. ....+..+.+++++..++....+ +.|+.||+.+++...+
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 2333332 33457777888888877776655 6899999988875543
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.43 E-value=1e-10 Score=129.26 Aligned_cols=232 Identities=9% Similarity=0.035 Sum_probs=163.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCcee
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 528 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~ 528 (732)
.....|+|+++++++++...++.|++||.+++........... .. ++|+++++.|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4688999999999777777789999999998877766554333 34 99999999999988866 899999876543 2
Q ss_pred EEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----EeccCCe--e-EEEEeCCCCEEEEEEc
Q 004737 529 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 597 (732)
Q Consensus 529 ~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~----~~~~~~i--~-~v~~sp~g~~ll~~s~ 597 (732)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224466789999996556665 66688999999987764332 1111122 3 8999997666666654
Q ss_pred -CCeEEEEECCCCeEEEEEcCC---------------CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEe
Q 004737 598 -ENYISILDVETQVCRLKLQGH---------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 598 -dg~I~IwDl~t~~~i~~l~~h---------------~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
++.|+.||.... +..+.++ -.....|+|+++|.++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 689999998754 2223222 23578999999999666654 569999997665 2 2233
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 660 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 660 ~~~---------------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
..+ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 222 245788999999765555556668887765
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=3.9e-12 Score=136.80 Aligned_cols=259 Identities=9% Similarity=-0.000 Sum_probs=170.4
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEEEEe-------ccCCCceEEEEEcCCCCeEEEEeC-----CCeE
Q 004737 451 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 516 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~-----Dg~I 516 (732)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|-..+..++|+++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6799999999999988864 2343556655455533 22 134567999999999876665443 5799
Q ss_pred EEEecCCCCceeEEeec------CCcceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEEeccCCee--EEEE
Q 004737 517 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGAT--QMRF 585 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~------h~~~V~sl~fspdg~~llaSgs---~Dg~I~iWDl~t~~~i~~~~~~~~i~--~v~~ 585 (732)
.+||+.+++. ++.+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..+.... ...+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987663 333332 2245689999987666666665 67899999999888766554311110 1334
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEECC---CCCC--ce---e
Q 004737 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIG---SGSK--GE---C 655 (732)
Q Consensus 586 sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~---t~~~--~~---~ 655 (732)
.+++..+.+...++.+..|. ..+..|+|+|++++|+.+. ++ .|..++.. .+.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 44555555566666665442 2468899999999888887 44 56555532 1100 00 0
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEECCC
Q 004737 656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 656 i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~--h~~~V~sla~spdg~~LaSgs~DG 726 (732)
+.. ..+......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+
T Consensus 241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 111 1223345678999999877777778899999986676553332 345789999999988887776443
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=4e-10 Score=120.18 Aligned_cols=221 Identities=15% Similarity=0.087 Sum_probs=153.6
Q ss_pred eEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737 453 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 453 V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
..+++|++++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..++.. ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EEE
Confidence 56789999754 55666678899999998876543 32 34679999999999877754 44 599999987663 222
Q ss_pred ecC-----CcceEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCe
Q 004737 532 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY 600 (732)
Q Consensus 532 ~~h-----~~~V~sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~ 600 (732)
... ...+.+++++|+|..++.+... .+.|+.++ +++.............++|+++++.++++.. ++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 211 2358899999998644432221 24566666 4655443333345678999999988776654 689
Q ss_pred EEEEECC--CC-e-----EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737 601 ISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 671 (732)
Q Consensus 601 I~IwDl~--t~-~-----~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f 671 (732)
|.+||+. ++ . ....+......+..++++++|.++++.. ++.|.+||. ++ ..+..+......+.+++|
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEE
Confidence 9999986 55 2 2333433445678999999998877766 678999998 34 455556656667999999
Q ss_pred e-CCCCEEEEEEcCC
Q 004737 672 H-PTFPSLLVIGCYE 685 (732)
Q Consensus 672 s-pdg~~L~sgs~dg 685 (732)
+ +++..|++++..+
T Consensus 279 ~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 IGPDASRLLVTSARE 293 (326)
T ss_dssp ESTTSCEEEEEEBCT
T ss_pred ecCCCCEEEEEecCC
Confidence 8 8888787766544
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=3.1e-11 Score=133.67 Aligned_cols=260 Identities=13% Similarity=0.145 Sum_probs=181.6
Q ss_pred ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccC-----
Q 004737 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH----- 491 (732)
Q Consensus 427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h----- 491 (732)
..+.+.|..++.....+.. -..+ .++++|||++|+++. .++.|.++|..+++.+.++.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 4566677777765544443 3334 799999999888775 3678999999999998887532
Q ss_pred --CCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737 492 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 492 --~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t 567 (732)
......++|+|||++|+++.. ++.|.+.|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.+..+
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 123567899999999999875 57999999998764 44444211 1344566656666777788888888866
Q ss_pred CeeeeE----EeccC-C-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EEcC----------CCCCEEEEEEeC
Q 004737 568 GSCAGV----FKCQS-G-ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNT 629 (732)
Q Consensus 568 ~~~i~~----~~~~~-~-i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~--~l~~----------h~~~V~sla~sp 629 (732)
++.... +.... . ...+.|.+++..++.....+.|.++|+....... .+.- .......+++++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 655432 11111 1 1235678999998888888999999997654321 1110 011122378999
Q ss_pred CCCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCe
Q 004737 630 SGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENK 696 (732)
Q Consensus 630 dg~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~t~~ 696 (732)
++..+++.. ++.|.++|+.+. +.+..+.. ......+.|+||++ ++++.. .++.|.++|+.+++
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 988777654 247999999988 55555543 23578899999999 888888 48899999999999
Q ss_pred EEEE
Q 004737 697 TLTL 700 (732)
Q Consensus 697 ~~~~ 700 (732)
.+..
T Consensus 405 vv~t 408 (426)
T 3c75_H 405 ELRS 408 (426)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8843
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.39 E-value=9e-11 Score=123.65 Aligned_cols=233 Identities=11% Similarity=0.120 Sum_probs=160.2
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 446 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 446 l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
+..+........|+++|+ ++++...++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+ +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 334455677899999998 5666667899999998 444 34455566779999999999977666566899999986 4
Q ss_pred CceeEEeecC-----CcceEEEEEcCCCCcEEEE----EeC-------------CCcEEEEECCCCeeeeEEeccCCeeE
Q 004737 525 DYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQ 582 (732)
Q Consensus 525 ~~~~~~l~~h-----~~~V~sl~fspdg~~llaS----gs~-------------Dg~I~iWDl~t~~~i~~~~~~~~i~~ 582 (732)
.. ..+..+ ...+..+++.++|. ++++ +.. .+.|+.||..+++..... .......
T Consensus 117 ~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g 192 (305)
T 3dr2_A 117 QA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG 192 (305)
T ss_dssp CE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred CE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence 42 222211 13467899999975 4444 221 256888888777655444 4455778
Q ss_pred EEEeCCCCEEEEEEcC------CeEEEEECCCCeEE--EEE-cCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCc
Q 004737 583 MRFQPRLGRILAAAIE------NYISILDVETQVCR--LKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 653 (732)
Q Consensus 583 v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i--~~l-~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~ 653 (732)
++|+|+++.++++... +.|.+||+...... ..+ .........++++++|+++++. .+.|.+|+.. +
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g--- 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G--- 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence 9999999988888775 78999998765311 111 1123445678999999955544 4459999984 3
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
+.+..+.... .+..++|.++++.|++++.+ .|+.+++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEEC
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEEC
Confidence 4455554444 58899999999988888875 4554443
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=5.8e-10 Score=118.92 Aligned_cols=221 Identities=9% Similarity=0.019 Sum_probs=150.9
Q ss_pred ceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737 494 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 572 (732)
Q Consensus 494 ~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~ 572 (732)
....++|+|++. ++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCcEEE
Confidence 456789999754 556666788999999987543 3332 346799999999975 44343 33 49999998887654
Q ss_pred EEecc-----CCeeEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C
Q 004737 573 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 639 (732)
Q Consensus 573 ~~~~~-----~~i~~v~~sp~g~~ll~~s~------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D 639 (732)
..... ..+..+++++++..+++... .+.|+.+| +++... +..+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 33321 23778999999886655442 25677777 454433 222334678999999999776665 6
Q ss_pred CeEEEEECC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 004737 640 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 713 (732)
Q Consensus 640 g~I~IWDl~--t~-~~--~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~s 713 (732)
+.|.+||+. ++ .. ...+..+.........++++++|.++++...++.|.+||. +++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 21 1223333333456788999999986666666789999998 45554 555666679999998
Q ss_pred -CCCCEEEEEEC
Q 004737 714 -TVNGMVASASH 724 (732)
Q Consensus 714 -pdg~~LaSgs~ 724 (732)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655543
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=8.7e-11 Score=123.76 Aligned_cols=235 Identities=6% Similarity=0.001 Sum_probs=159.2
Q ss_pred EEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004737 485 KSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563 (732)
Q Consensus 485 ~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iW 563 (732)
+..+.........+.|+++++ ++++...++.|..|+.. +. ...+..+...+..++++++|. ++++...++.|.+|
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRS 112 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEE
Confidence 334444556778999999998 56666678999999984 33 345555667789999999975 55455556789999
Q ss_pred ECCCCeeeeEEec-----cCCeeEEEEeCCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEcCCCCC
Q 004737 564 SINNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQ 621 (732)
Q Consensus 564 Dl~t~~~i~~~~~-----~~~i~~v~~sp~g~~ll~----~s~-------------dg~I~IwDl~t~~~i~~l~~h~~~ 621 (732)
+.. ++....... ...+..+++.++|..+++ +.. .+.|+.||..+++..... ....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 986 554332221 123667999999887765 221 256888888766544333 3456
Q ss_pred EEEEEEeCCCCEEEEEe-C------CeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 622 VHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 622 V~sla~spdg~~Lasgs-D------g~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
...++|+|+++.|+.+. . +.|.+|++..... .....+ .........++++++|+ |++++. +.|.+|+..
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSD 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTT
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCC
Confidence 78999999999877766 4 6899999875421 111111 11233456789999998 555554 459999985
Q ss_pred CCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 694 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 694 t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
......+..+. .+.+++|+++++.|+.++.++..++
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 44333444444 6899999999998888888776554
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.37 E-value=1.3e-11 Score=134.22 Aligned_cols=266 Identities=12% Similarity=0.066 Sum_probs=178.5
Q ss_pred eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccC------
Q 004737 428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------ 491 (732)
Q Consensus 428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h------ 491 (732)
.+.+.|..++..... +.....+ .+.|+||+++++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~---i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH---SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEE---EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEE---EeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 445566666654443 4333344 799999999988886 3689999999999999998643
Q ss_pred -CCceEEEEEcCCCCeEEEEeC--CCeEEE--EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737 492 -TQWITDVRFSPSLSRLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566 (732)
Q Consensus 492 -~~~V~~l~fspdg~~Lasgs~--Dg~I~I--WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~ 566 (732)
......++|+|||++++++.. +..|.+ +|+.+ +..+.- .+ |+.+.|++...+++.+.|+.+.+.|+.
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-AS---CFHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SS---CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CC---ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence 124568999999999999875 467888 99876 233321 11 122446666777777788999889988
Q ss_pred C-----Ceeee----EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCC----------CCCEEEE
Q 004737 567 N-----GSCAG----VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSV 625 (732)
Q Consensus 567 t-----~~~i~----~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h----------~~~V~sl 625 (732)
+ ++... .+....... . .++++.++..+. +.|.+.|+.+. +.+..+.-. ......+
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred cccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 6 44331 111111112 3 677788777777 99999999754 233222110 0111226
Q ss_pred EEeCCCCEEEEEe--C--------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 004737 626 CWNTSGEYLASVS--D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 693 (732)
Q Consensus 626 a~spdg~~Lasgs--D--------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~ 693 (732)
+|+++++.++++. . +.+.+||+.+. +.+..+... .....++|+||+++++++. .++.|.++|+.
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 8999998777643 2 35679999987 455554432 2688999999998555544 48899999999
Q ss_pred CCeEEEEccCCCCeeEEEEeC
Q 004737 694 ENKTLTLSAHDKLVSSLAAST 714 (732)
Q Consensus 694 t~~~~~~~~h~~~V~sla~sp 714 (732)
+++.+....-....+.+++.+
T Consensus 346 t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 346 SDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp SCEEEEECCCCSCCCEEECCC
T ss_pred CCcEEEEEECCCCCCEEEeec
Confidence 999995555555566777654
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1e-11 Score=135.76 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=138.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----------EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD 520 (732)
.++.+++++...++++|+.+ .++||++++.. ..... .+.. |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 56669865433 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
+.+.. .......|...+.++.+.+. . ++++..||.|.+||+.++.... ....+.+++|+|+| ++++..||.
T Consensus 113 v~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 98765 35556677888888887754 3 6678889999999999877654 33689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------c---CCCCCEEEEEEeCCCCEEEEEe
Q 004737 601 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 601 I~IwDl~t~~~--i~~l------~---~h~~~V~sla~spdg~~Lasgs 638 (732)
|++|+.....+ ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5566 3 3778999999999999988754
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=2.2e-09 Score=116.12 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=165.4
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce--
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 538 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-- 538 (732)
++..+++++.++.|..+|.++++.+..+............. +..+++++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 45578888899999999999999887665443222222222 45788888999999999998874 33332221110
Q ss_pred ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-----------e-eEEEEeCCCCEEEEEEcCCeEEE
Q 004737 539 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 539 ---~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-----------i-~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
...... + ..++.+..++.|..+|..+++.+........ + ....+ .++.+++++.++.|..
T Consensus 179 ~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 179 RGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA 253 (376)
T ss_dssp CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred cCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence 122222 2 2455677789999999999998877664321 1 11111 2477888888999999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEE
Q 004737 604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sg 681 (732)
+|.++++.+..... .....+... +..|+.++ ++.|..+|..++ +.+..... ....+....+ .+..|+++
T Consensus 254 ~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~ 324 (376)
T 3q7m_A 254 LDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVG 324 (376)
T ss_dssp EETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEE
T ss_pred EECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEE
Confidence 99999988876652 334455443 45555566 889999999988 44444331 1222222333 24578899
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCee-EEEEeCCCCEEEEEECCCeEEEeC
Q 004737 682 GCYETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.++.|++||..+++.+ ........+. ..... +..|+.++.||.|..||
T Consensus 325 ~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 DSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 99999999999999987 3333233332 22332 56788899999999885
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.8e-10 Score=125.31 Aligned_cols=245 Identities=10% Similarity=-0.005 Sum_probs=164.1
Q ss_pred cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEecCCCCceeEEeecC-------C
Q 004737 473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 535 (732)
Q Consensus 473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl~s~~~~~~~l~~h-------~ 535 (732)
.|.|+|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999999766666 799999999999886 368999999999774 5555422 1
Q ss_pred cceEEEEEcCCCCcEEEEEeC-CCcEEE--EECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCC---
Q 004737 536 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 608 (732)
Q Consensus 536 ~~V~sl~fspdg~~llaSgs~-Dg~I~i--WDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t--- 608 (732)
.....+.|+|||+.++++... +..|.+ +|+.+ +..+...+. +.+.|++ ..+++.+.|+.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 245789999999888866543 467888 99876 445543222 2233443 3455566788888899887
Q ss_pred --CeEEEE----EcCCCCCEEEEEEeCCCC-EEEEEeCCeEEEEECCCCCCceeEEEeecC-------C---CceEEEEE
Q 004737 609 --QVCRLK----LQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVF 671 (732)
Q Consensus 609 --~~~i~~----l~~h~~~V~sla~spdg~-~LasgsDg~I~IWDl~t~~~~~~i~~~~~~-------~---~~I~sl~f 671 (732)
++.... +.....+. . .+++. ++++.. +.|.+.|+..... ..+..+... . .....++|
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~ 271 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEE
Confidence 432211 11122333 3 44444 444455 8899999865321 222222110 0 11122689
Q ss_pred eCCCCEEEEEEc-C--------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEeC
Q 004737 672 HPTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 732 (732)
Q Consensus 672 spdg~~L~sgs~-d--------g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWD 732 (732)
+|++++++++.. . +.+.+||+.+.+.+....-.....+|+|++|++ .+++.. .++.|.|+|
T Consensus 272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 999999888754 2 367799999999884333333689999999998 566666 599999986
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=1.2e-09 Score=128.42 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=179.7
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc-----------eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----------V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+..|++++.++.|..+|..+|+.+-.+...... ...+++ ++..|++++.|+.|..+|..+++. +..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 456777777899999999999999877543210 112333 456888889999999999999885 333
Q ss_pred eecC-C----cceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCCe-------------------
Q 004737 531 FTGH-S----TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 580 (732)
Q Consensus 531 l~~h-~----~~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~i------------------- 580 (732)
+..+ . ..+. ...+. +..+++.++ .++.|+.||..+++.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 3332 1 1121 11122 234443332 2689999999999998877642211
Q ss_pred --------------eEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC------
Q 004737 581 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 619 (732)
Q Consensus 581 --------------~~v~~sp~g~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~------ 619 (732)
..++++++++.+++++.++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887664 599999999998887664 21
Q ss_pred -CCEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-----------CCce-----------------
Q 004737 620 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-----------GNKF----------------- 666 (732)
Q Consensus 620 -~~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-----------~~~I----------------- 666 (732)
.....+....+| .+|+.++ +|.|+++|..+++ .+..+... ..++
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233344467 5777777 9999999999984 33332211 0111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCe
Q 004737 667 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 696 (732)
Q Consensus 667 -------~sl~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~t~~ 696 (732)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 156889998888776432 679999999999
Q ss_pred EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 697 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 697 ~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+-...+...+....+..++.+++.++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=9.7e-10 Score=129.52 Aligned_cols=264 Identities=11% Similarity=0.093 Sum_probs=175.0
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc----------e-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+..|++++.++.|+.+|..+|+.+-.+..+... + ..+.+ ++..|++++.|+.|..||..+++...+.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999887543221 0 11222 3567888989999999999998854333
Q ss_pred eec-CCc---ceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccC----------------------
Q 004737 531 FTG-HST---TVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS---------------------- 578 (732)
Q Consensus 531 l~~-h~~---~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~---------------------- 578 (732)
... +.. .+. +..+. + ..+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVV-N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCcCCCCCCccccCCcEEE-C-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 222 111 111 11111 2 34443332 36899999999999987775210
Q ss_pred ----------CeeEEEEeCCCCEEEEEEcCCe-------------------EEEEECCCCeEEEEEcC--CC-------C
Q 004737 579 ----------GATQMRFQPRLGRILAAAIENY-------------------ISILDVETQVCRLKLQG--HK-------N 620 (732)
Q Consensus 579 ----------~i~~v~~sp~g~~ll~~s~dg~-------------------I~IwDl~t~~~i~~l~~--h~-------~ 620 (732)
....++++++.+.+++++.++. |..||.++++.+..+.. |. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 0125788998899998887763 99999999999887764 21 1
Q ss_pred CEEEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC---------------------------------
Q 004737 621 QVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG--------------------------------- 663 (732)
Q Consensus 621 ~V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~--------------------------------- 663 (732)
.+.......+|+ +++.++ +|.++++|..+++. +.......
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 222223333564 677777 89999999999843 32111000
Q ss_pred ------CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEEC
Q 004737 664 ------NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNM 692 (732)
Q Consensus 664 ------~~I~sl~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl 692 (732)
.....++|+|+...+++... ++.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 00123688998887777632 267999999
Q ss_pred CCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 693 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 693 ~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+++.+-...+...+..-.+...+.+|++++.||.|++||
T Consensus 463 ~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 463 VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 9999883333334444446667788999999999999996
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.23 E-value=5.6e-10 Score=131.62 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=157.7
Q ss_pred cCCCceEEEEEcCCCCeEEEEe-----CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-------
Q 004737 490 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 557 (732)
Q Consensus 490 ~h~~~V~~l~fspdg~~Lasgs-----~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D------- 557 (732)
+|...+..++|+|||++||.+. .+..|+|||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 3556788999999999988543 2357999999988742222221 113578899 988777665542
Q ss_pred -----CcEEEEECCCCee--eeEEecc----CCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe-EEEEEcCCCCC
Q 004737 558 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 621 (732)
Q Consensus 558 -----g~I~iWDl~t~~~--i~~~~~~----~~i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~-~i~~l~~h~~~ 621 (732)
..|++|++.+... ...+... .....+.|+|++++|++.... ..|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 2499999987643 2233222 236789999999998766542 489999998763 34455556665
Q ss_pred EEEEEEeCCCCEEEEEe--C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 004737 622 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 693 (732)
Q Consensus 622 V~sla~spdg~~Lasgs--D---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~ 693 (732)
.... |++++..|+..+ + +.|.+||+.++... ....+..+...+. .|++++.+|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5555 666666555444 3 47999999876431 1234444555554 8999999888777655 79999998
Q ss_pred CCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECC----CeEEEeC
Q 004737 694 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 732 (732)
Q Consensus 694 t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~D----G~I~IWD 732 (732)
.+....+. .+...+..+.++++++.|+....+ +.|..||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 76655443 345667788888888766655444 6777765
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=1e-13 Score=151.22 Aligned_cols=222 Identities=14% Similarity=0.046 Sum_probs=120.4
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCc-ceE
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 539 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~-~V~ 539 (732)
++..+++++.|+.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577999999999999999999999988875 4566666667787888888999999999987764 333332211 111
Q ss_pred -EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC
Q 004737 540 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 618 (732)
Q Consensus 540 -sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h 618 (732)
+..+. . ...+++++.++.|+.||..+|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 11111 2 2345577779999999999999887776543 2345668888999999999999999998766554321
Q ss_pred CCCEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEE--EEcCCeEEEEE
Q 004737 619 KNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLV--IGCYETLELWN 691 (732)
Q Consensus 619 ~~~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~-sl~fspdg~~L~s--gs~dg~I~IwD 691 (732)
. ....++..+. ..+++++ |+.|+.||..++ +.+..... ..++. ..++++++...+. ...++.++++|
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld 233 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNY-ASPVVAFYVWQREGLRKVMHINVAVETLRYLT 233 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEEC-SSCEEEEEECTTSSCEEECCEEEEHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecC-CCceEEEEEecCCceEeccceeecccceeeee
Confidence 1 1223333321 3344455 999999999988 44444443 33443 3445556642110 01133455666
Q ss_pred CCCCe
Q 004737 692 MTENK 696 (732)
Q Consensus 692 l~t~~ 696 (732)
..+++
T Consensus 234 ~~tG~ 238 (369)
T 2hz6_A 234 FMSGE 238 (369)
T ss_dssp HHHHH
T ss_pred hhcCC
Confidence 55554
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=7.1e-09 Score=112.00 Aligned_cols=254 Identities=9% Similarity=0.054 Sum_probs=164.2
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccC---------CCceE-EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---------~~~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
+..|++++.++.|..||.++++.+..+... ...+. .+.. ++..+++++.++.|..+|..+++.. ..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA-WQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE-EEE
Confidence 567888888899999999999988666532 12232 2222 4567888889999999999988753 333
Q ss_pred ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe------eEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISILD 605 (732)
Q Consensus 532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i------~~v~~sp~g~~ll~~s~dg~I~IwD 605 (732)
...........+. + ..++.++.++.|..+|..+++.+..+.....+ ....+. ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 3222222222222 2 24556777999999999999988877754433 122222 46788888899999999
Q ss_pred CCCCeEEEEEcCCCCC----EE---EEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 606 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~----V~---sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
..+++.+......... +. .+...| .+..++.++ ++.|..+|..++ +.+.... ......+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence 9999888766532110 00 011111 234566666 889999999887 3443333 223344444 35
Q ss_pred CEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 676 PSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
..+++++.++.|+.||..+++.+ ... .....+...... +..|+.++.+|.|.+||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 67888999999999999999887 333 122233333433 56788888899888875
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.21 E-value=3.4e-08 Score=101.53 Aligned_cols=247 Identities=9% Similarity=0.010 Sum_probs=161.0
Q ss_pred CEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCc
Q 004737 463 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 536 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~ 536 (732)
.+|+.+.. +.|+.++++.... ...+......+..++|++++..|+.+. .++.|.+++++.... ...+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 4788888775432 112222234578999999766655554 578999999986542 223322234
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 612 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i 612 (732)
....+++++++..++++....+.|.++++............ .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 67899999987778877777889999998754332222222 457889999987888777753 68989988654322
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 004737 613 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 689 (732)
Q Consensus 613 ~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~I 689 (732)
............+++++++..|+.+. .+.|.++|+... ....... .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22222335678999999888777766 679999998753 2222222 22334566654 556666665 469999
Q ss_pred EECCCCeEE-EEccCC-CCeeEEEEeCCCC
Q 004737 690 WNMTENKTL-TLSAHD-KLVSSLAASTVNG 717 (732)
Q Consensus 690 wDl~t~~~~-~~~~h~-~~V~sla~spdg~ 717 (732)
+|..+++.+ .+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999999877 333322 2578888888764
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=2e-08 Score=110.57 Aligned_cols=223 Identities=11% Similarity=0.062 Sum_probs=155.9
Q ss_pred EEc--CCCCEEEEE-ECCCcEEEEEcCCC----eEEEEec------c-CCCceEEEEEcCCCCeEEEEeCC------CeE
Q 004737 457 HFS--PDGKLLATG-GHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 516 (732)
Q Consensus 457 afS--pdg~~Lasg-s~Dg~I~VWd~~t~----~~~~~l~------~-h~~~V~~l~fspdg~~Lasgs~D------g~I 516 (732)
.++ .++++|++. ..++.|.|+|+.+. +..++++ . ....-..+...|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 788887654 56789999999765 6777773 1 11245667888999 77776655 789
Q ss_pred EEEecCCCCceeEEeecC--C-cceEEEEEcCCCCcEEEEEe-------------------CCCcEEEEECCCCeeeeEE
Q 004737 517 RVWDTENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 574 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h--~-~~V~sl~fspdg~~llaSgs-------------------~Dg~I~iWDl~t~~~i~~~ 574 (732)
.++|..+.+. +..+... . ..-..+-|+|+++.++ +.. .+..|.+||+.+++.+..+
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998764 5555422 1 2245688899976444 553 3689999999999888888
Q ss_pred ecc---CCeeEEEE--eCCCCEEEEEEc------CCeEEEEECCCCeE--EEE--EcCC----------------CCCEE
Q 004737 575 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 623 (732)
Q Consensus 575 ~~~---~~i~~v~~--sp~g~~ll~~s~------dg~I~IwDl~t~~~--i~~--l~~h----------------~~~V~ 623 (732)
... .....+.| +|+++++++++. ++.|.+|..+.+.. ... +... .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 764 23455656 999999888775 56887776654421 111 1110 23467
Q ss_pred EEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 004737 624 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 624 sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~--------------~I~sl~fspdg~~L~sgs 682 (732)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. .-..+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 77999999975544455655544311 357889999999999998
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.18 E-value=1.1e-09 Score=115.19 Aligned_cols=259 Identities=10% Similarity=0.003 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
..+.++.+.+++. |..++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. +.. ...
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~ 131 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWR 131 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEE
Confidence 3457777777775 4445444 888885 555443333222222333333 5567888889999999988 553 444
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ 609 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~ 609 (732)
+..+...+.++...+++. ++ .++.++.|..||.. ++....+... ..+.++.+.+++. +++++ +.|..|| .++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDG 204 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTS
T ss_pred EcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCC
Confidence 444555566777776653 33 56678899999999 7777666543 3356667766765 44444 8999999 777
Q ss_pred eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 610 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 610 ~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
+.+..+......+.+++..+++.+++...++.|..+|. ++ ..+..+......+..+.+.+++. |++++.++.|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~ 279 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYA 279 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEE
T ss_pred cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEE
Confidence 77777766667788889988887766655788888874 33 33344443333344556665664 788888889999
Q ss_pred EECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 690 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 690 wDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
+|. +++.+ .+......+.++....++. |+.++.+|.+++.
T Consensus 280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 996 56655 4444556677888777775 5568889988764
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.17 E-value=4.8e-10 Score=122.50 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=130.3
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-----------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 605 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-----------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD 605 (732)
.+..+++++.. .++++|+.+ .+++|++.... ......... +..++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999986 456577766 46679864322 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d 684 (732)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+.++.. .. +...|.+++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~---~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST---KQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE---EE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc---cc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98776555666677889988877653 55555 99999999997632 22 23579999999999 7889999
Q ss_pred CeEEEEECCCCeE--E-EE------c---cCCCCeeEEEEeCCCCEEEEEE
Q 004737 685 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 685 g~I~IwDl~t~~~--~-~~------~---~h~~~V~sla~spdg~~LaSgs 723 (732)
+.+++|+...+.. . ++ . +|...|.+|.|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999888774 3 44 2 3788999999999998887643
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=3.3e-09 Score=124.74 Aligned_cols=254 Identities=10% Similarity=0.047 Sum_probs=169.5
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccC-C----CceEE-EEEcCCCCeEEEEeC------CCeEEEEecCCCCcee
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 528 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~----~~V~~-l~fspdg~~Lasgs~------Dg~I~IWDl~s~~~~~ 528 (732)
++..|++++.|+.|..+|..+++.+..+..+ . ..+.. ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4568888899999999999999999887654 1 11211 111 2345555543 7999999999988543
Q ss_pred EEeecCC-------------------------------cceEEEEEcCCCCcEEEEEeCCC-------------------
Q 004737 529 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 558 (732)
Q Consensus 529 ~~l~~h~-------------------------------~~V~sl~fspdg~~llaSgs~Dg------------------- 558 (732)
+...... .....++++|++..++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 3222110 1113577888865444 554443
Q ss_pred cEEEEECCCCeeeeEEeccC----------CeeEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004737 559 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHK------ 619 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~~----------~i~~v~~sp~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------ 619 (732)
.|..+|.++++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998876421 12233333466 568888899999999999999887665221
Q ss_pred -----CCE------------------------EEEEEeCCCCEEEEEe-C------------------------------
Q 004737 620 -----NQV------------------------HSVCWNTSGEYLASVS-D------------------------------ 639 (732)
Q Consensus 620 -----~~V------------------------~sla~spdg~~Lasgs-D------------------------------ 639 (732)
.++ ..++|+|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 111 1468899888877753 2
Q ss_pred -------------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCC
Q 004737 640 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 704 (732)
Q Consensus 640 -------------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~ 704 (732)
+.|..||+.++ +.+..+.. ..++....+...+..+++++.++.|++||.++++.+ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 44444432 334455567778888999999999999999999988 443 333
Q ss_pred CCeeEEEEeCCCCEEEE
Q 004737 705 KLVSSLAASTVNGMVAS 721 (732)
Q Consensus 705 ~~V~sla~spdg~~LaS 721 (732)
....-+.|..+|+.++.
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33445667778874443
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.15 E-value=8.7e-09 Score=121.37 Aligned_cols=257 Identities=11% Similarity=0.060 Sum_probs=165.7
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccC--CCceEEEEEcC---CCCeEEEEe------CCCeEEEEecCCCCceeE
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fsp---dg~~Lasgs------~Dg~I~IWDl~s~~~~~~ 529 (732)
++..|++++.|+.|+.+|.++|+.+..+... ......+..+| ++ .+++++ .++.|+.||..+++...+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 3568888899999999999999998776532 11111111122 44 444443 378999999999885433
Q ss_pred EeecC------------------------------CcceEEEEEcCCCCcEEEEEeCCC-------------------cE
Q 004737 530 TFTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EI 560 (732)
Q Consensus 530 ~l~~h------------------------------~~~V~sl~fspdg~~llaSgs~Dg-------------------~I 560 (732)
..... ......++++|+.. +++.+..++ .|
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 32110 01112577888754 555666565 39
Q ss_pred EEEECCCCeeeeEEeccC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCE----
Q 004737 561 RYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV---- 622 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~~~----------~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~V---- 622 (732)
..||.++++.+..+.... ......+..++. .+++++.+|.|+++|.++++.+....... ...
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 999999999998876421 112222223443 67788889999999999998875433111 000
Q ss_pred ----------------------------------EEEEEeCCCCEEEEEe------------------------------
Q 004737 623 ----------------------------------HSVCWNTSGEYLASVS------------------------------ 638 (732)
Q Consensus 623 ----------------------------------~sla~spdg~~Lasgs------------------------------ 638 (732)
..++|+|+..++++..
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 1268888887777652
Q ss_pred ----------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc
Q 004737 639 ----------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS 701 (732)
Q Consensus 639 ----------------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~ 701 (732)
+|.|+.||+.++ +.+..+..+ .++....+...+..+++++.|+.|+.||.++++.+ .+.
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 267999999988 555444433 23333466667888999999999999999999998 444
Q ss_pred c-CCCCeeEEEEeCCCC-EEEEEE
Q 004737 702 A-HDKLVSSLAASTVNG-MVASAS 723 (732)
Q Consensus 702 ~-h~~~V~sla~spdg~-~LaSgs 723 (732)
. +.....-+.|..+|+ |+++.+
T Consensus 514 ~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 514 AASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCcccCceEEEECCEEEEEEEe
Confidence 3 333334567778887 444443
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.11 E-value=1.9e-09 Score=115.70 Aligned_cols=220 Identities=9% Similarity=0.031 Sum_probs=151.1
Q ss_pred CceEEEEEcCCCCeEEEEe--CCCeEEEEecCCCCceeEEe-------ecCCcceEEEEEcCCCCcEEEEEeC-----CC
Q 004737 493 QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 558 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l-------~~h~~~V~sl~fspdg~~llaSgs~-----Dg 558 (732)
..+..|+++++|+++++.. .++.++||.+.++. +..+ ..|-..+..++|++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 6789999999999988864 23436667665332 3322 12446799999999864 5444322 57
Q ss_pred cEEEEECCCCeeeeEEecc-------CCeeEEEEeCCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEE-EEE
Q 004737 559 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 626 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~-------~~i~~v~~sp~g~~ll~~s----~dg~I~IwDl~t~~~i~~l~~h~~~V~-sla 626 (732)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999987777643 2358899998767766655 468999999998887776655432111 133
Q ss_pred EeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCe-----
Q 004737 627 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 696 (732)
Q Consensus 627 ~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~---t~~----- 696 (732)
+..+|..+.+.+ ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666655 77766553 1356799999999999888776 66666542 111
Q ss_pred ---EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 697 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 697 ---~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+...++......+++++++.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012224455677899999999888888889999996
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=1.6e-08 Score=114.77 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=168.0
Q ss_pred CCCEEEEEEC-CCcEEEEEcCCCeEEEEeccC-CCceEEEEE-c-CCCCeEEEEe------------------CCCeEEE
Q 004737 461 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 518 (732)
Q Consensus 461 dg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~f-s-pdg~~Lasgs------------------~Dg~I~I 518 (732)
||++|++... ++.|.+.|+.+.++...+.-. ...+..+++ . |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877665 467999999999988855422 245888898 5 8999998885 2468999
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-------------------------------------CcEE
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 561 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-------------------------------------g~I~ 561 (732)
+|.++.+.......+- ....++++|+|+.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999866433333322 456788999988888777443 2477
Q ss_pred EEECCC--Cee-eeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEcCCCCCEEEE
Q 004737 562 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 625 (732)
Q Consensus 562 iWDl~t--~~~-i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~------------~i~~l~~h~~~V~sl 625 (732)
+.|..+ ++. +..+.......++.++|||+++++++. +..|.+||+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 566766677889999999999888775 6899999999653 334443 33467889
Q ss_pred EEeCCCCEEEEEe--CCeEEEEECCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 004737 626 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 687 (732)
Q Consensus 626 a~spdg~~Lasgs--Dg~I~IWDl~t~-------~~~~~i~~~~~~~~~I~-----sl~fspdg~~L~sgs~dg--~I-- 687 (732)
+|+++| ++++.. |+.|.+||+... +....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666655 999999999762 11356667766654332 124589999999887532 34
Q ss_pred ---------EEEECCCCeEE
Q 004737 688 ---------ELWNMTENKTL 698 (732)
Q Consensus 688 ---------~IwDl~t~~~~ 698 (732)
.++|+..++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766533
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=5.6e-09 Score=118.59 Aligned_cols=257 Identities=9% Similarity=0.013 Sum_probs=176.6
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEecc---------------------------------CC------CceEEEEEcC---
Q 004737 465 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 502 (732)
Q Consensus 465 Lasgs~Dg~I~VWd~~t~~~~~~l~~---------------------------------h~------~~V~~l~fsp--- 502 (732)
|.+|+..|.|+|+-+.+++.+..+.- +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56778888888888888777766420 01 1122244444
Q ss_pred --CCCeEEEEeC-CCeEEEEecCCCCceeEEee-cCCcceEEEEE-c-CCCCcEEEEE-----------------eCCCc
Q 004737 503 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 559 (732)
Q Consensus 503 --dg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~f-s-pdg~~llaSg-----------------s~Dg~ 559 (732)
||++++.... +..|.+.|+++.+. ...+. .....+..+++ . |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888777665 55799999998663 44222 12345778887 4 8988887664 33568
Q ss_pred EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC--------------------------------------eE
Q 004737 560 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 601 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg--------------------------------------~I 601 (732)
|.++|..+.+.+..+...+....++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999888766778899999999999988653 36
Q ss_pred EEEECCC--CeE-EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC--------CceeEEEeecCCCceEE
Q 004737 602 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 668 (732)
Q Consensus 602 ~IwDl~t--~~~-i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~--------~~~~i~~~~~~~~~I~s 668 (732)
.|.|.++ ++. +..+.. .....++.++|||+++++++ +++|.++|+.+.. ....+......+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 6777776 433 333432 23457899999999999988 7799999998541 01123223334566889
Q ss_pred EEEeCCCCEEEEE-EcCCeEEEEECCC----------CeEE-EEccCCCCe-----eEEEEeCCCCEEEEEEC
Q 004737 669 CVFHPTFPSLLVI-GCYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 724 (732)
Q Consensus 669 l~fspdg~~L~sg-s~dg~I~IwDl~t----------~~~~-~~~~h~~~V-----~sla~spdg~~LaSgs~ 724 (732)
++|+++| ++++. .-++.|.+||+.. ...+ ++..|..+- .++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 55544 4577999999976 4444 554554322 22345799999998863
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.07 E-value=1.2e-09 Score=115.08 Aligned_cols=256 Identities=10% Similarity=0.052 Sum_probs=166.8
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCC
Q 004737 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 535 (732)
Q Consensus 456 lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~ 535 (732)
+.+..++ .|.+++.++.|..|| .+++....+..+...+.++.+.+++. |+.++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4454555 456667788999999 88887766655555567777777765 4445444 888886 3332 22222222
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737 536 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 614 (732)
Q Consensus 536 ~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~ 614 (732)
.......+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 222333333 3 3 34467778899999998 777666654333 45566666644 7778888999999999 877777
Q ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 615 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 615 l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
+......+.++.+.+++.++++. +.|..|| .++ ..+.........+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 66556667788888888866655 8899999 555 44444444556678888888875 77788888899998544
Q ss_pred CeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 695 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 695 ~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.....+......+..+.+.+++ .|+.++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 3333444444445556665555 566677787777765
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.02 E-value=1.5e-07 Score=103.56 Aligned_cols=222 Identities=9% Similarity=-0.003 Sum_probs=148.7
Q ss_pred EEc--CCCCeEEEE-eCCCeEEEEecCCCC---ceeEEee------c-CCcceEEEEEcCCCCcEEEEEeCC------Cc
Q 004737 499 RFS--PSLSRLATS-SADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 559 (732)
Q Consensus 499 ~fs--pdg~~Lasg-s~Dg~I~IWDl~s~~---~~~~~l~------~-h~~~V~sl~fspdg~~llaSgs~D------g~ 559 (732)
.++ .++++|++. -.++.|.|+|+.+.. ...+++. . .......+.+.|++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 778877665 457899999997441 1233331 0 11234567788997 55565544 78
Q ss_pred EEEEECCCCeeeeEEeccCC----eeEEEEeCCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEc
Q 004737 560 IRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 616 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~~~~~----i~~v~~sp~g~~ll~~s-------------------~dg~I~IwDl~t~~~i~~l~ 616 (732)
|.++|..+++.+..+..... ...+-|+|+++.+++.. ....|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 99999999999988874322 34578899999887774 26899999999998888776
Q ss_pred CC-C-CCEEEEEE--eCCCCEEEEEeC-------CeEEEEECCCCCCceeEEEe--ec----------------CCCceE
Q 004737 617 GH-K-NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFH 667 (732)
Q Consensus 617 ~h-~-~~V~sla~--spdg~~LasgsD-------g~I~IWDl~t~~~~~~i~~~--~~----------------~~~~I~ 667 (732)
.. . .....|.| +|+++++++++. ++|.+|....+. ......+ .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence 42 1 23445656 999998776553 477776665431 1222211 11 024467
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCC---CeEE-EEc-c-C------------CCCeeEEEEeCCCCEEEEEE
Q 004737 668 SCVFHPTFPSLLVIGC-YETLELWNMTE---NKTL-TLS-A-H------------DKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 668 sl~fspdg~~L~sgs~-dg~I~IwDl~t---~~~~-~~~-~-h------------~~~V~sla~spdg~~LaSgs 723 (732)
.+.+++|+++|+++.. .+.|.+||+.. .+.+ .+. + . ......++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8899999999998887 45999999863 2344 221 1 1 01368899999999999887
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=4.9e-08 Score=114.60 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=171.0
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc----------e-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
+..|++++.++.|..+|..+|+.+-.+...... + ..+++ ++..|++++.|+.|..+|..+++...+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457777788899999999999998877543211 0 11222 3567888889999999999998854333
Q ss_pred eecCC---cceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccC--C--------------------
Q 004737 531 FTGHS---TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS--G-------------------- 579 (732)
Q Consensus 531 l~~h~---~~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~--~-------------------- 579 (732)
..... ..+. ...+. + ..+++..+ .+|.|+.||.++++.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 22111 1111 11111 2 34443332 25899999999999998776311 0
Q ss_pred ----------eeEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CC
Q 004737 580 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 621 (732)
Q Consensus 580 ----------i~~v~~sp~g~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~ 621 (732)
...++++++.+.+++++.++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 12468888888888887765 399999999999887764 22 23
Q ss_pred EEEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC------------Cc--------------------
Q 004737 622 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 665 (732)
Q Consensus 622 V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~------------~~-------------------- 665 (732)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 567777 9999999999984 332111100 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCeEEEEccCCC
Q 004737 666 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 705 (732)
Q Consensus 666 ----I~sl~fspdg~~L~sgs------------------------------------~dg~I~IwDl~t~~~~~~~~h~~ 705 (732)
...++++|+...+++.. .++.|+.||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888777666522 13689999999999883323333
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 706 LVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 706 ~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444445556788999999999999986
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=5.5e-07 Score=92.40 Aligned_cols=222 Identities=7% Similarity=0.010 Sum_probs=143.9
Q ss_pred CeEEEEeCCCeEEEEecCCCCce----eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CC
Q 004737 505 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 579 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~ 579 (732)
.+|+.+.. +.|+.++++..... ...+......+..++|++++..++++...++.|.++++........+... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555543 47888888764321 11122223457899999987788878777889999999866544333322 46
Q ss_pred eeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEECCCCCCce
Q 004737 580 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 654 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D---g~I~IWDl~t~~~~~ 654 (732)
...++++++++.++++.. .+.|.++|+..................++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 789999998777777765 57999999875433222332235678999999766665555 3 5888888764321 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 732 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD 732 (732)
.+ ..........+++++++.+|+++... +.|.++|........+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11223457889999998878777654 58999999865544333333455677764 45555555 456777653
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=1.4e-07 Score=97.61 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=143.1
Q ss_pred eEEEEeccCCC--ceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCC
Q 004737 483 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 557 (732)
Q Consensus 483 ~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~D 557 (732)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4555563 443 3679999998644444432 57999999999875 44433 222223345555 45777777789
Q ss_pred CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCC
Q 004737 558 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 632 (732)
Q Consensus 558 g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~ 632 (732)
+.|.++|..+.+.+..+... ......++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +++
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999988754 12234466688888887778999999999988887766321 246788888 675
Q ss_pred EEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 004737 633 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 695 (732)
Q Consensus 633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~ 695 (732)
+++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.+++++. .+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555444 789999999998 555555421 135689999999987777764 568888887554
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=4.2e-10 Score=122.45 Aligned_cols=200 Identities=9% Similarity=-0.012 Sum_probs=109.5
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--e
Q 004737 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 580 (732)
Q Consensus 503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i 580 (732)
++..+++++.|+.|+.||..+++. +..+.. +.+.+..+..++ .++++++.|+.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999875 444443 455555555554 4555777899999999999887765543211 1
Q ss_pred e-EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737 581 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 658 (732)
Q Consensus 581 ~-~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~ 658 (732)
. ...+ ..++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++ |+.|+.||.++++..-...
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~- 157 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT- 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence 0 1111 134678888899999999999999887776543 234566777787777 8999999999885322211
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeE-EEEeCCC
Q 004737 659 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVN 716 (732)
Q Consensus 659 ~~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~s-la~spdg 716 (732)
... ....++..+. ..+++++.++.|+.||..+++.+-......++.. ..++.++
T Consensus 158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREG 215 (369)
T ss_dssp EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCc
Confidence 111 1122333332 4588889999999999999998733334455543 3344444
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=2.9e-07 Score=105.95 Aligned_cols=263 Identities=11% Similarity=0.098 Sum_probs=165.7
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCeEEEEeccCCC-ce----------EEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737 462 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 528 (732)
Q Consensus 462 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~-~V----------~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~ 528 (732)
+..+++++. ++.|..+|. .+++.+-.+..... .+ ..+++ ++..+++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666666 889999999 89998877643221 00 11223 35678888899999999999987543
Q ss_pred EEee-cCC--cceE-EEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEeccCCe-------------------
Q 004737 529 RTFT-GHS--TTVM-SLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGA------------------- 580 (732)
Q Consensus 529 ~~l~-~h~--~~V~-sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~~~i~~~~~~~~i------------------- 580 (732)
+.-. .+. ..+. ...+. + ..+++.+.. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 3221 111 0111 11112 2 344433332 789999999999998877643221
Q ss_pred --------------------eEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCC--C---
Q 004737 581 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGH--K--- 619 (732)
Q Consensus 581 --------------------~~v~~sp~g~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~h--~--- 619 (732)
..+++.++.+.++++..+ +.|..+|.++++.+..+... .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 235677777788777642 35999999999988877532 1
Q ss_pred -----CCEEEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-------------Cce-----------
Q 004737 620 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF----------- 666 (732)
Q Consensus 620 -----~~V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~-------------~~I----------- 666 (732)
.++. +....+|+ +++.++ +|.++++|..+++ .+....... .++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22234674 566666 8899999998884 333322111 111
Q ss_pred ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECCC
Q 004737 667 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE 694 (732)
Q Consensus 667 ---------------~sl~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~t 694 (732)
..++|+|+...+++... ++.|+.||..+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 24578888877777642 46899999999
Q ss_pred CeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 695 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 695 ~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++.+-...+...+....+...+.+|+.++.||.|++||
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 98873223333333333344567788899999999886
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.91 E-value=9.7e-07 Score=93.29 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=147.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-c------------------CCCceEEEEEcCCCCeEEEEe
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS 511 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~------------------h~~~V~~l~fspdg~~Lasgs 511 (732)
....+++|++++++++++..++.|..||..+++...... . ....+..+++.++...|+.+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678999999978888889999999987755432211 0 013578999998334555565
Q ss_pred CCCeEEEEecCCCCceeEEeec-----CCcceEEEEEcC-CCCcEEEEEeC-----------------CCcEEEEECCCC
Q 004737 512 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG 568 (732)
Q Consensus 512 ~Dg~I~IWDl~s~~~~~~~l~~-----h~~~V~sl~fsp-dg~~llaSgs~-----------------Dg~I~iWDl~t~ 568 (732)
..+.|.++|..++. +..+.. .......+++.+ +|. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 55668888877543 222211 113468899999 874 4444321 367999998877
Q ss_pred eeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCC---eEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-----
Q 004737 569 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD----- 639 (732)
Q Consensus 569 ~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~spdg~~LasgsD----- 639 (732)
+.............++++++++.++++.. .+.|.+||+... ... .+....+ ...++++++|.++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 65544433355678999999987777754 589999998752 211 1111223 788999999987776543
Q ss_pred ------CeEEEEECCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 004737 640 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 695 (732)
Q Consensus 640 ------g~I~IWDl~t~~~~~~i~~~~~~~----~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~ 695 (732)
+.|.++|.. + +.+..+.... ..+..+++ .++. |++++ .++.|.++++...
T Consensus 254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEecccc
Confidence 467777764 3 3444444322 34566666 3444 44444 5668888887643
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=3.8e-06 Score=100.32 Aligned_cols=265 Identities=7% Similarity=0.050 Sum_probs=180.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
...|.++...++|.+.+ |+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999999887554 4455 689999888765543321 235799999998876 5567777779999877
Q ss_pred CCCceeEEeec-------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---------ccCCeeEEEEe
Q 004737 523 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQ 586 (732)
Q Consensus 523 s~~~~~~~l~~-------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---------~~~~i~~v~~s 586 (732)
+... ..+.. ....|.++...+++. +. .|+.++-|.+||..++....... ....|.++...
T Consensus 339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5443 22211 234689998887764 33 46667679999988766543321 12457888888
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEc----CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee--
Q 004737 587 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-- 660 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~----~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-- 660 (732)
+++..|.+++.++.|.+||..+++...... .....|.++...++|.+.++.. +-|.+||..++ .. ..+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~-~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SF-TTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EE-EECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eE-EEcccc
Confidence 887657788888889999998876543322 1345799999998888777655 45888998765 22 2221
Q ss_pred -----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-------cCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 661 -----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 661 -----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-------~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
.....|.++...+++. |.+++. +.|.+||..+++. .+. .....|.++...+++.+.++. ..| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence 1236789999999888 455555 5699999887766 332 134578999998888865544 345 4
Q ss_pred EEe
Q 004737 729 KIW 731 (732)
Q Consensus 729 ~IW 731 (732)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 444
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.89 E-value=3.4e-06 Score=100.70 Aligned_cols=267 Identities=7% Similarity=0.094 Sum_probs=176.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
+...|.++...+++.+.+ |+.++-|.+||..+++....... ....|.++...++|.+. .|+.+ -|.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcC
Confidence 356799999888886544 55455599999888765543322 13569999998887754 45555 5888998
Q ss_pred CCCCceeEEeec--------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------ccCCeeEEEEe
Q 004737 522 ENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQ 586 (732)
Q Consensus 522 ~s~~~~~~~l~~--------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-------~~~~i~~v~~s 586 (732)
.+... ..+.. ....|.++...++|. +. .|+.++-|.+|+..+........ ....|.++...
T Consensus 290 ~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 76542 22221 235699999988864 33 46666779999876544322111 12347888888
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737 587 PRLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 657 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~ 657 (732)
.++. +.+|+.++.|..||..++........ ....|.+++..+++.+|..|. ++-|.+||..++. . .
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~-~ 440 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---V-E 440 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---E-E
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---E-E
Confidence 7754 66788888899999987755432211 235799999999998444455 6789999988752 2 2
Q ss_pred Eee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-------CCCCeeEEEEeCCCCEEEEEECC
Q 004737 658 ELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHD 725 (732)
Q Consensus 658 ~~~-----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~-------h~~~V~sla~spdg~~LaSgs~D 725 (732)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...+++.+.+.. .+
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC
Confidence 222 1345789999988887 555555 569999998887664432 23679999998888766544 45
Q ss_pred CeEEEe
Q 004737 726 KCVKIW 731 (732)
Q Consensus 726 G~I~IW 731 (732)
| |..|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 5 5444
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.87 E-value=2e-06 Score=90.33 Aligned_cols=233 Identities=9% Similarity=0.026 Sum_probs=145.7
Q ss_pred CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-CCC-c
Q 004737 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 559 (732)
Q Consensus 482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg-~ 559 (732)
.+.+..+... .....++|+++++++++-..++.|..||.+... ...+. ....+..+++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3445555433 467899999999877776688999999987532 22222 335688999999986 443433 232 4
Q ss_pred EEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc---------CCCCCEEEEE
Q 004737 560 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 626 (732)
Q Consensus 560 I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~-i~~l~---------~h~~~V~sla 626 (732)
|..+|..+++........ .....++..+. ..++++. .++.|+++|..++.. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777787777765443322 12344554444 4555555 478999999886532 21111 111245566
Q ss_pred EeCCCCEEEEEe--CCeEEEEECCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE---E
Q 004737 627 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 700 (732)
Q Consensus 627 ~spdg~~Lasgs--Dg~I~IWDl~t-~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~---~ 700 (732)
++++.+|+.+. .+.|.+|++.. +.. .....+.. ......++++++|.++++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777776 67999999875 221 11111111 1345668999999865555567799999975 55532 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEECC
Q 004737 701 SAHDKLVSSLAAS---TVNGMVASASHD 725 (732)
Q Consensus 701 ~~h~~~V~sla~s---pdg~~LaSgs~D 725 (732)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233678999998 888877766643
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=1.1e-06 Score=92.87 Aligned_cols=230 Identities=9% Similarity=0.020 Sum_probs=145.3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec--------------------CCcceEEEEEcCCCCcEEE
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC 552 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~--------------------h~~~V~sl~fspdg~~lla 552 (732)
....+++|.+++++++++..++.|..||..+... ..+.. ....+..+++.+++..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3457788999998888888999999999876543 22211 1135788999973345554
Q ss_pred EEeCCCcEEEEECCCCeeeeEEec-----cCCeeEEEEeC-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 004737 553 SCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ 609 (732)
Q Consensus 553 Sgs~Dg~I~iWDl~t~~~i~~~~~-----~~~i~~v~~sp-~g~~ll~~s~-----------------dg~I~IwDl~t~ 609 (732)
++..+.|..+|..++........ ......+++.+ ++..+++-.. ++.|..||..++
T Consensus 97 -~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp -EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred -EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 43345588888875543221111 12367899999 8765554322 367999998877
Q ss_pred eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEc--
Q 004737 610 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGC-- 683 (732)
Q Consensus 610 ~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~--~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-- 683 (732)
+...... .......|+|++++++|+.+. ++.|.+|++...... ..+.. ... ...++++++|.++++...
T Consensus 176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~ 250 (322)
T 2fp8_A 176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEEL 250 (322)
T ss_dssp EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEET
T ss_pred EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcc
Confidence 6443322 123456799999999777665 679999998753221 12222 223 788999999985555544
Q ss_pred --------CCeEEEEECCCCeEE-EEccC----CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 684 --------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 684 --------dg~I~IwDl~t~~~~-~~~~h----~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.+.|..+|.. ++.+ .+... ...++++++. ++.++++....+.|.+++
T Consensus 251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEE
T ss_pred cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEe
Confidence 3578888875 5554 33322 2457777773 555555555667777653
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.84 E-value=9.2e-07 Score=91.40 Aligned_cols=201 Identities=7% Similarity=0.026 Sum_probs=138.8
Q ss_pred EEEEEecCCCC--CeEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEE-eCCC
Q 004737 441 TEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS-SADR 514 (732)
Q Consensus 441 ~~v~~l~~H~~--~V~~lafSpdg~~Lasgs~--Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasg-s~Dg 514 (732)
..+..++ |.. ....+.|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+.+ -.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 3445553 332 3689999998755554443 5799999999999998875322 223345554 4455544 4578
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC------CeeEEEEeCC
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPR 588 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~------~i~~v~~sp~ 588 (732)
.|.++|..+.+. +..+...... ...+++++..++++- .++.|.++|..+.+.+..+.... ....+.|. +
T Consensus 87 ~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 87 IGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp EEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 999999998664 4555422122 233556777887665 58899999999998888777432 35677887 5
Q ss_pred CCEEEEEEc-CCeEEEEECCCCeEEEEEcCC-------------CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC
Q 004737 589 LGRILAAAI-ENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 650 (732)
Q Consensus 589 g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h-------------~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~ 650 (732)
+ .+++... ++.|.+.|..+++.+..+... ....+.|+|+|+++.|++++ .++|.+.++...
T Consensus 162 g-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 162 G-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred C-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 6666664 689999999999988887532 13568999999987666666 678888887653
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=1.2e-06 Score=101.11 Aligned_cols=265 Identities=9% Similarity=0.043 Sum_probs=165.7
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCeEEEEeccCCCc-----------eEEEEEcCCCCe----EEEEeCCCeEEEEecCCC
Q 004737 462 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 524 (732)
Q Consensus 462 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~~-----------V~~l~fspdg~~----Lasgs~Dg~I~IWDl~s~ 524 (732)
+..|++++. ++.|.-+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666776 889999999 899998776533211 123456444444 888889999999999998
Q ss_pred CceeEEeecC-C--cceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCCe---------------
Q 004737 525 DYSLRTFTGH-S--TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA--------------- 580 (732)
Q Consensus 525 ~~~~~~l~~h-~--~~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~i--------------- 580 (732)
+...+.-... . ..+. ...+. + ..+++.++ .++.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8544322211 0 0111 11122 2 34443332 3799999999999998877643322
Q ss_pred ------------------------eEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCC
Q 004737 581 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN 620 (732)
Q Consensus 581 ------------------------~~v~~sp~g~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~h~~ 620 (732)
..+++.+..+.+++++.+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 135677788888888765 3899999999999887764221
Q ss_pred ----------CEEEEEEe-CCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------CCce------
Q 004737 621 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF------ 666 (732)
Q Consensus 621 ----------~V~sla~s-pdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------------~~~I------ 666 (732)
++. +... .+| ..++.++ +|.++++|..+++ .+...... ..++
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccccC
Confidence 121 2222 467 4566666 8999999999884 33322211 1111
Q ss_pred --------------------EEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 004737 667 --------------------HSCVFHPTFPSLLVIG---------------------------------------CYETL 687 (732)
Q Consensus 667 --------------------~sl~fspdg~~L~sgs---------------------------------------~dg~I 687 (732)
..++|+|+...+++.. ..+.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 2456777766555431 23689
Q ss_pred EEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 688 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 688 ~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
+.||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999998872222222222222233567888899999999876
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.81 E-value=6.8e-07 Score=91.66 Aligned_cols=192 Identities=12% Similarity=0.122 Sum_probs=134.6
Q ss_pred eEEEEeccCCC--ceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737 483 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 558 (732)
Q Consensus 483 ~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg 558 (732)
+.+.++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.-. .......+.++++.+++..-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 345555 3443 34788998 666666666665 999999999875 4443322 23333333334567777777899
Q ss_pred cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCCE
Q 004737 559 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 633 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~~ 633 (732)
.+.+||..+.+.+..+.....-. .+.++++.++.+..++.|.++|..+.+.+..+.... ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGW--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCC--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCce--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 99999999999999998755333 344567778877778899999999998887765421 345667886 6765
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 004737 634 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~------------~~~I~sl~fspdg~~L~sgs~d 684 (732)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 55554 789999999998 555554432 2356899999999888888764
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=6.8e-06 Score=97.85 Aligned_cols=274 Identities=8% Similarity=-0.059 Sum_probs=175.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec--------------cCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 515 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------------~h~~~V~~l~fspdg~~Lasgs~Dg~ 515 (732)
...|.++...++|. |..|+..+-|.++|..+........ -....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45799999988885 5556665678899987765432211 1345799999988775 666777777
Q ss_pred EEEEecCCCCceeEEee--------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEE
Q 004737 516 VRVWDTENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 583 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l~--------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v 583 (732)
|..|+............ -....|.++...+++. +. .|+.++-|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 89998876543221110 1235688998887754 33 45555669999987654332111 12347778
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-
Q 004737 584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 660 (732)
Q Consensus 584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~- 660 (732)
...+++ .|.+++.++.|..||..+++...... .....|.++...+++.+.+... +-|.+||..+... ..+....
T Consensus 413 ~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 777664 46667777889999998776443221 1346799999988887666544 6688999876532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc----CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 661 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 661 --~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~----h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.....|.++...+++. |.+++.++.|..||..+++...+.. ....|.++...+++.+.++ +.+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 1136789999999887 5666665568889988877665432 2356899998888876554 4467546654
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=7.3e-06 Score=86.05 Aligned_cols=235 Identities=9% Similarity=0.027 Sum_probs=144.4
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eEEEE
Q 004737 442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVW 519 (732)
Q Consensus 442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IW 519 (732)
.+..+..+ .....++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++..... .|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 34445433 45789999999997777667899999998764 333332 235688999999998666554332 46667
Q ss_pred ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-------c---cCCeeEEEEeCC
Q 004737 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMRFQPR 588 (732)
Q Consensus 520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~-------~---~~~i~~v~~sp~ 588 (732)
|..++......-.........+++.++ ..++++...++.|+++|...++. +.... . -.....+ +++
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred cCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 766655321111112223345555544 45555555688999999876531 11110 0 0123444 788
Q ss_pred CCEEEEEEc-CCeEEEEECCC-CeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737 589 LGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 589 g~~ll~~s~-dg~I~IwDl~t-~~~--i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
+++++++.. .+.|.+||+.. ++. ...+. .......++++++|+++++.. .+.|.+||.. +.. ..+..+....
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~~~ 254 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQGV 254 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGGTC
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccccc
Confidence 888777765 57999999874 321 11111 113456789999998766655 7789999975 311 1122333333
Q ss_pred CceEEEEEe---CCCCEEEEEEcCC
Q 004737 664 NKFHSCVFH---PTFPSLLVIGCYE 685 (732)
Q Consensus 664 ~~I~sl~fs---pdg~~L~sgs~dg 685 (732)
....+++|. +++..|+++...+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 568999998 8988888877654
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.76 E-value=1.1e-06 Score=102.96 Aligned_cols=255 Identities=13% Similarity=0.132 Sum_probs=158.6
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCC----CceEE-EEEcCCCCeEEEEeC------CCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~-l~fspdg~~Lasgs~------Dg~I~IWDl~s~~~~~~~ 530 (732)
+..|++++.|+.|..+|.++|+.+..+.... ..+.+ ..+. ++ .++++.. ++.|..||..+++...+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987765421 11111 1111 33 4555432 589999999998853332
Q ss_pred eec--CC----------------------------cceEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 004737 531 FTG--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 561 (732)
Q Consensus 531 l~~--h~----------------------------~~V~sl~fspdg~~llaSgs~Dg-------------------~I~ 561 (732)
... .. .....+++.++.. +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 00 0112467777754 455665554 499
Q ss_pred EEECCCCeeeeEEecc----------CCeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCC--------
Q 004737 562 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN-------- 620 (732)
Q Consensus 562 iWDl~t~~~i~~~~~~----------~~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~-------- 620 (732)
.+|.++++.+..+... .......+..+++ .+++++.+|.++++|.++++.+..+.....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999887742 1222233334554 578888999999999999988754432110
Q ss_pred ----CE------------------------EEEEEeCCCCEEEEE-----------------------------------
Q 004737 621 ----QV------------------------HSVCWNTSGEYLASV----------------------------------- 637 (732)
Q Consensus 621 ----~V------------------------~sla~spdg~~Lasg----------------------------------- 637 (732)
++ ..++++|+..+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 125777876665541
Q ss_pred -e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCC-eeEEEEe
Q 004737 638 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAAS 713 (732)
Q Consensus 638 -s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~-V~sla~s 713 (732)
. +|.|..||+.++ +.+-..... .......+...+..+++++.++.|++||.++++.+ .+...... -.-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 377999999988 444443322 23333455557788999999999999999999988 44332211 1233444
Q ss_pred CCCC-EEEEEE
Q 004737 714 TVNG-MVASAS 723 (732)
Q Consensus 714 pdg~-~LaSgs 723 (732)
.+++ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 5665 455444
No 255
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.76 E-value=4.2e-05 Score=80.85 Aligned_cols=228 Identities=8% Similarity=-0.046 Sum_probs=147.1
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCC---CceeEEeecCCcceE
Q 004737 464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 539 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~---~~~~~~l~~h~~~V~ 539 (732)
+|+.+. ...|+..|+.+.+....+. ....+..++|++++..|+.+ ..++.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344433 3578999998876665554 34567899999866555544 45689999998751 211222322224568
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEEEEEc
Q 004737 540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 616 (732)
Q Consensus 540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~t~~~i~~l~ 616 (732)
.+++.+.+..++++-...+.|.++|+........+. .......++++|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987767777777778899999987544433333 23467899999988888877764 689999986543332233
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 004737 617 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 693 (732)
Q Consensus 617 ~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~ 693 (732)
..-.....|+|++++..|+.+. .+.|..+|+.... ...+............+++.. + .++.+. ..+.|..++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCC
Confidence 3345688999999887777776 6699999997532 233322212223456777753 3 455544 45689999876
Q ss_pred CCe
Q 004737 694 ENK 696 (732)
Q Consensus 694 t~~ 696 (732)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 654
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.74 E-value=2.2e-07 Score=108.74 Aligned_cols=266 Identities=9% Similarity=0.039 Sum_probs=154.7
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEEcCCCeEE--EEe-ccCCCceEEEEEcCCCCeEEEEeC-CCeEEE
Q 004737 455 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV 518 (732)
Q Consensus 455 ~lafSp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~~--~~l-~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~I 518 (732)
++++.+ ++++++.|+.+. .+.+||..+.+-. ..+ ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 888889887643 5889998876532 223 223344456788889999999984 458999
Q ss_pred EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-CC-----CcEEEEECCCCeeeeEE-----eccCCeeEEEEeC
Q 004737 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP 587 (732)
Q Consensus 519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~D-----g~I~iWDl~t~~~i~~~-----~~~~~i~~v~~sp 587 (732)
||..+.......-......-.++++.+++. +++.|+ .+ ..+.+||..+.+....- ..........+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999875432111011111223455566654 555666 34 56999999887654321 0000000011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEeC-CCCEEEEEe-CC-------
Q 004737 588 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE------- 640 (732)
Q Consensus 588 ~g~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~---------~~V~sla~sp-dg~~Lasgs-Dg------- 640 (732)
++..++.++.+ ..+..||..+.........+. ..-.++.|.. ++++++.|+ ++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 34444555443 457889988775443322221 1234455543 667777765 32
Q ss_pred ----eEEEEECCCCCCceeEEEe--ecCC-CceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEcc
Q 004737 641 ----LVRVWSIGSGSKGECIHEL--SCTG-NKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA 702 (732)
Q Consensus 641 ----~I~IWDl~t~~~~~~i~~~--~~~~-~~I~sl~fspdg~~L~sgs~d-----------g~I~IwDl~t~~~~~~~~ 702 (732)
.|.+||..+. ...... .... ....++++.|+++.+++++.+ ..+.+||..+.+...+..
T Consensus 429 ~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 5778887764 222221 1112 223456778899988888854 468999998877654321
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEEC
Q 004737 703 ---HDKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 703 ---h~~~V~sla~spdg~~LaSgs~ 724 (732)
......+..+.+++++++.|+.
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCccccccHhhcCCCcEEEecCCC
Confidence 1222334556789999999885
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.74 E-value=1.6e-06 Score=88.95 Aligned_cols=186 Identities=9% Similarity=0.056 Sum_probs=129.4
Q ss_pred eEEeecCCcc--eEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEE
Q 004737 528 LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 602 (732)
Q Consensus 528 ~~~l~~h~~~--V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~ 602 (732)
+.++ .|... ...+.|+ + ..++.+++.+| .|+++|+.+++.+..+..........+.+.++.++.... ++.+.
T Consensus 34 v~~~-phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEe-cCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 3444 35433 4788888 4 46777777666 899999999999999887766655444555677777765 78999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--C---CceEEEEEeCCCC
Q 004737 603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFP 676 (732)
Q Consensus 603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~--~---~~I~sl~fspdg~ 676 (732)
+||..+.+.+.++.... .-..++ +++..|+.+. ++.|.++|..+. +.+..+... + ..++.+.|. +|.
T Consensus 111 v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~---~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESL---TPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTC---SEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCC---eEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999998887432 223444 5666666655 778999999887 444443321 2 334567776 665
Q ss_pred EEEEEE-cCCeEEEEECCCCeEEEEccC-------------CCCeeEEEEeCCCCEEEEEEC
Q 004737 677 SLLVIG-CYETLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH 724 (732)
Q Consensus 677 ~L~sgs-~dg~I~IwDl~t~~~~~~~~h-------------~~~V~sla~spdg~~LaSgs~ 724 (732)
|++.. .++.|.+.|..+++.+....- ....+.|+|+|+++.|+..+.
T Consensus 184 -lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 184 -IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp -EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred -EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 55554 567999999999998822211 235689999999887776664
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.73 E-value=2.1e-06 Score=88.11 Aligned_cols=191 Identities=9% Similarity=0.060 Sum_probs=134.7
Q ss_pred eEEEEeccCC--CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 483 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 483 ~~~~~l~~h~--~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
+.+.++ .|. .....+.|+ ++.++++.+.+|.|+++|+.+++..... .. .........++++.+++..-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLASDGERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEECSSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEEeCCEEEEEEccCCEE
Confidence 344555 343 334688887 4566667777889999999998864444 22 2333322333456777777789999
Q ss_pred EEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCCEEE
Q 004737 561 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 635 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~~La 635 (732)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998755444444 567888888888999999999998887766422 245778887 776555
Q ss_pred EEe-CCeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 004737 636 SVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 636 sgs-Dg~I~IWDl~t~~~~~~i~~~~~-------------~~~~I~sl~fspdg~~L~sgs~d 684 (732)
... ++.|.+.|..++ +.+..+.. .....+.++|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 779999999998 55544432 12457899999988777777654
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.72 E-value=1.9e-05 Score=84.88 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=154.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCCCcee
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 528 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~~~~~ 528 (732)
.+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|..++++.... .
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 4456677766644 444443 45688888877665555543 3458899999765555544 4678999999886542 2
Q ss_pred EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEE
Q 004737 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILD 605 (732)
Q Consensus 529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d--g~I~IwD 605 (732)
..+.........+++.+.+..++++-...+.|.++++........+.. -.....++++|.++.++.+... +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 223322345678999987778887777788999999875443333322 2457889999988887777653 7899999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-
Q 004737 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG- 682 (732)
Q Consensus 606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs- 682 (732)
+........+...-...+.|+|++++..|+.+. .+.|..+|+..... .. .+.........+++. .+ .|+.+.
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~--~~~~~~~~P~giav~-~~-~ly~td~ 263 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KA--VISQGLPHPFAITVF-ED-SLYWTDW 263 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EE--EEeCCCCCceEEEEE-CC-EEEEecC
Confidence 875433322223345678999999877777766 66899999875321 11 222223455677773 33 455554
Q ss_pred cCCeEEEEECCCCe
Q 004737 683 CYETLELWNMTENK 696 (732)
Q Consensus 683 ~dg~I~IwDl~t~~ 696 (732)
..+.|..++..+++
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 45588888855554
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=4.1e-06 Score=96.34 Aligned_cols=254 Identities=9% Similarity=0.013 Sum_probs=153.6
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCC----CceEE-EEEcCCCCeEEEEeC------CCeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~-l~fspdg~~Lasgs~------Dg~I~IWDl~s~~~~~~~ 530 (732)
+..+++++.|+.|..+|..+++.+..+.... ..+.+ .... + ..+++++. ++.|..+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999887654221 01211 1111 3 35555554 799999999998753332
Q ss_pred eecCCc------------------------------------ce-EEEEEcCCCCcEEEEEeC-----------C----C
Q 004737 531 FTGHST------------------------------------TV-MSLDFHPSKEDLLCSCDN-----------N----S 558 (732)
Q Consensus 531 l~~h~~------------------------------------~V-~sl~fspdg~~llaSgs~-----------D----g 558 (732)
...... .+ ..+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00 135566654444433321 1 3
Q ss_pred cEEEEECCCCeeeeEEeccC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004737 559 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 619 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~~----------~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------ 619 (732)
.|..+|.++++.+..+.... ...-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 59999999999988776421 111122224553 45677789999999999998887654321
Q ss_pred -------CCE--------------------------EEEEEeCCCCEEEEEe----------------------------
Q 004737 620 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 638 (732)
Q Consensus 620 -------~~V--------------------------~sla~spdg~~Lasgs---------------------------- 638 (732)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777666543
Q ss_pred ----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-CC
Q 004737 639 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL 706 (732)
Q Consensus 639 ----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~-~~ 706 (732)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++.+ .+.... ..
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 367889998887 333333322 22222333445667888999999999999999988 333221 11
Q ss_pred eeEEEEeCCCCEEEE
Q 004737 707 VSSLAASTVNGMVAS 721 (732)
Q Consensus 707 V~sla~spdg~~LaS 721 (732)
-.-+.+..+++.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 223445567764443
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.69 E-value=1e-05 Score=93.13 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=160.1
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCce---------EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 533 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V---------~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~ 533 (732)
..+++++.++.|..+|..+++.+-.+....... ..+++ .+..+++++.|+.|..+|..+++...+.-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355556654459999999999987765432210 11222 3557888889999999999998854332221
Q ss_pred C-C--cceE-EEEEcC---CCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCC---------------------
Q 004737 534 H-S--TTVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 579 (732)
Q Consensus 534 h-~--~~V~-sl~fsp---dg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~--------------------- 579 (732)
. . ..+. ...+.. ++..+++++. .++.|+.+|..+++.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 1 0111 111111 1222454554 378999999999998876543210
Q ss_pred ---------------------eeEEEEeCCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 004737 580 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 614 (732)
Q Consensus 580 ---------------------i~~v~~sp~g~~ll~~s~--------------------d----g~I~IwDl~t~~~i~~ 614 (732)
-..++++++.+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013567777788887774 2 5899999999999887
Q ss_pred EcC--CC--------CCEEEEEEe-CCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-------------Cc-
Q 004737 615 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 665 (732)
Q Consensus 615 l~~--h~--------~~V~sla~s-pdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~-------------~~- 665 (732)
+.. |. .++. +... .+|+ +++.++ +|.++++|..+++ .+....... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1221 2222 4674 677777 8999999998884 333222111 00
Q ss_pred -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 004737 666 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 682 (732)
Q Consensus 666 -------------------------------I~sl~fspdg~~L~sgs-------------------------------- 682 (732)
...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01346677665555543
Q ss_pred -cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 683 -CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 683 -~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
.++.|+.||+.+++.+ ... +...+..-.....+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2468999999999987 332 222332222233467888899999999886
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.67 E-value=7.7e-06 Score=83.06 Aligned_cols=185 Identities=10% Similarity=0.093 Sum_probs=127.6
Q ss_pred EEeecCC--cceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEE
Q 004737 529 RTFTGHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISI 603 (732)
Q Consensus 529 ~~l~~h~--~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~I 603 (732)
..+ .|. .....+.|+. ..++.+.+.+| .|+++|+.+++.+..+..........+...++.++.... ++.+.+
T Consensus 13 ~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 13 KRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 344 455 3456899986 46777777654 899999999999999887766655544455677776654 789999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--C---CceEEEEEeCCCCE
Q 004737 604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPS 677 (732)
Q Consensus 604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~--~---~~I~sl~fspdg~~ 677 (732)
||..+.+.+.++.... .-..++ +++..|+.+. ++.|.++|..+. +.+..+... . ..++.+.|. +|..
T Consensus 90 ~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 90 YDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999887533 224555 4566555555 789999999887 344443322 1 345666766 5554
Q ss_pred EEEEEcCCeEEEEECCCCeEEE-Ec--c-----------CCCCeeEEEEeCCCCEEEEEE
Q 004737 678 LLVIGCYETLELWNMTENKTLT-LS--A-----------HDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 678 L~sgs~dg~I~IwDl~t~~~~~-~~--~-----------h~~~V~sla~spdg~~LaSgs 723 (732)
++..-.+..|.+.|..+++.+. +. + .....+.|+|+|+++.|+..+
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 4444357799999999999882 22 1 123568999999887666655
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.67 E-value=6.9e-06 Score=83.40 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=133.5
Q ss_pred eEEEEeccCC--CceEEEEEcCCCCeEEEEeCC--CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737 483 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 558 (732)
Q Consensus 483 ~~~~~l~~h~--~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg 558 (732)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-. ...........++.++...-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCC
Confidence 445555 354 4466899986 4555555554 4999999999875 4433322 22222222333567777777899
Q ss_pred cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCCE
Q 004737 559 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 633 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~~ 633 (732)
.+.+||..+.+.+..+.....-..++ +++..|+++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 99999999999999998765444444 567788888788999999999998887776422 356677776 6766
Q ss_pred EEEEe-CCeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 004737 634 LASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-------------~~~~I~sl~fspdg~~L~sgs~d 684 (732)
++... ++.|.+.|..++ +.+..+.. .....+.++++|++..|++.+..
T Consensus 163 yanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 65554 779999999998 55554442 12356899999998888887764
No 264
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=2.9e-05 Score=92.36 Aligned_cols=273 Identities=10% Similarity=0.034 Sum_probs=171.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~ 522 (732)
...|.++...++|.+. .++.++-|..||..+++....... ....|.++...+++.+.+ |+.+ -+.+||..
T Consensus 162 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~ 238 (781)
T 3v9f_A 162 SEQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNAN 238 (781)
T ss_dssp CCCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred ccceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCC
Confidence 3568899888887544 466665799999888765432111 135699999888876554 4455 68899987
Q ss_pred CCCceeEEee------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---------------ccCCee
Q 004737 523 NPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------CQSGAT 581 (732)
Q Consensus 523 s~~~~~~~l~------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---------------~~~~i~ 581 (732)
+......... .....|.++...+++. +. .|+..+-|.++|..+........ ....|.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 239 TETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTEEEC-----------CCCCEEEEEECTTSE-EE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCcEEEEEcCCCccccccCceEEEEEECCCCC-EE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 6543211111 1235688998887753 33 45554568899988765432211 123578
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc---------CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737 582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 652 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~---------~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~ 652 (732)
++....++ .+.+|+.++.|..|+..+........ .....|.+++..++|.+.+...++-|.+||..+...
T Consensus 317 ~i~~D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 395 (781)
T 3v9f_A 317 YIFQDSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA 395 (781)
T ss_dssp EEEECSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE
T ss_pred EEEEeCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE
Confidence 88888875 46778888889999987654322110 023569999999888877655466788999765311
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
.............|.++...+++. |.+++.++.|..||..+++...+.. ....|.++...+++.+.+ |+..| |.
T Consensus 396 ~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~G-l~ 472 (781)
T 3v9f_A 396 IYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAG-VF 472 (781)
T ss_dssp ECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTE-EE
T ss_pred EEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCc-eE
Confidence 000000112346788998888887 6667777789999998887665432 356799998887776444 45554 54
Q ss_pred Ee
Q 004737 730 IW 731 (732)
Q Consensus 730 IW 731 (732)
+|
T Consensus 473 ~~ 474 (781)
T 3v9f_A 473 VI 474 (781)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.66 E-value=2.2e-05 Score=85.55 Aligned_cols=237 Identities=9% Similarity=0.000 Sum_probs=153.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEE
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~ 530 (732)
.-+|.+..+++ +|+.+ ....|+.+++........+.. ...+..++|.+.+..|+ +-...+.|..|+++.... ...
T Consensus 78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~ 153 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV 153 (386)
T ss_dssp SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEE
T ss_pred CCeECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEE
Confidence 34566665533 44444 346788899887665555543 34588999997655555 445678999999886542 222
Q ss_pred eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEECC
Q 004737 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVE 607 (732)
Q Consensus 531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~ 607 (732)
+.........+++.+.+..++++-...+.|.++++........+.. -.....++++|.++.++.+... +.|..+++.
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 3322345678889887777877777778899999875443333322 2457889999988888777653 689999987
Q ss_pred CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cC
Q 004737 608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CY 684 (732)
Q Consensus 608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~d 684 (732)
...........-...+.|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..
T Consensus 234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~ 308 (386)
T 3v65_B 234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHT 308 (386)
T ss_dssp SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTT
T ss_pred CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCC
Confidence 6543333333445678999998877777766 6789999987532 111222223456677773 33 444444 45
Q ss_pred CeEEEEECCCCeE
Q 004737 685 ETLELWNMTENKT 697 (732)
Q Consensus 685 g~I~IwDl~t~~~ 697 (732)
+.|..++..+++.
T Consensus 309 ~~V~~~~~~~G~~ 321 (386)
T 3v65_B 309 KSINSANKFTGKN 321 (386)
T ss_dssp TEEEEEETTTCCS
T ss_pred CeEEEEECCCCcc
Confidence 6888888655543
No 266
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=3.3e-06 Score=86.60 Aligned_cols=175 Identities=8% Similarity=0.033 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEc
Q 004737 538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ 616 (732)
Q Consensus 538 V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~ 616 (732)
...+.|+ +..++.+.+.+|.|+++|+.+++.+..+ .........+.+.++.++... .++.+.+||..+.+.+.++.
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4688887 3578888888999999999999999888 666655433444555666555 47899999999999999887
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeEEE
Q 004737 617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLEL 689 (732)
Q Consensus 617 ~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~--~~---~~I~sl~fspdg~~L~sgs-~dg~I~I 689 (732)
.. ..-..++ +++..|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +|. |++.. .++.|.+
T Consensus 134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~v 205 (268)
T 3nok_A 134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLE 205 (268)
T ss_dssp CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEE
T ss_pred CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEE
Confidence 53 2224455 5677777766 889999999887 34444332 22 235667777 665 55555 5679999
Q ss_pred EECCCCeEEE-Ecc-------------CCCCeeEEEEeCCCCEEEEEE
Q 004737 690 WNMTENKTLT-LSA-------------HDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 690 wDl~t~~~~~-~~~-------------h~~~V~sla~spdg~~LaSgs 723 (732)
.|..+++.+. +.. -....+.|+|+|+++.|+..+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999872 211 124678999999876555544
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.61 E-value=8e-05 Score=79.10 Aligned_cols=265 Identities=8% Similarity=-0.017 Sum_probs=150.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec----cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~ 525 (732)
...+.+|.|.+++..+++ +.++.| ++..+.++.-..+. .....+.+|.|.+ +..+ .++.++.|.. ..++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE--ECCCC
Confidence 346999999888877774 566765 33344443332221 2245688999976 4444 4456664443 33222
Q ss_pred ceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737 526 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 600 (732)
Q Consensus 526 ~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~ 600 (732)
....... .+...+..+.+.+++ .+++++. ++.|.. ....++.-.... ....+..+.+.+++..++ ++.+|.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~-~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVA-VSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEE-EETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEE-EECCCc
Confidence 2222222 233457788877654 4554544 554432 222232222222 234578889998866554 455565
Q ss_pred EEEE-EC--CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeC
Q 004737 601 ISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHP 673 (732)
Q Consensus 601 I~Iw-Dl--~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl~fsp 673 (732)
|+.- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++++...+ .....+.. ....+..+.+.+
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence 5543 42 3334332 23456789999999998887776888877653222 11111111 223588899998
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEE-Ec---cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 674 TFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~~~~~-~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
++. +++++.++.| ++....++... +. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 776 4555567767 44555555443 22 234578899997544 566777899887654
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=1.1e-05 Score=89.29 Aligned_cols=233 Identities=9% Similarity=0.063 Sum_probs=140.2
Q ss_pred ceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC----cEEEEECCCC
Q 004737 494 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 568 (732)
Q Consensus 494 ~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg----~I~iWDl~t~ 568 (732)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........|+|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 467899998 45667666655889999988644 3444444556889999999876776655333 24434432 3
Q ss_pred eee--eEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe--CCeE
Q 004737 569 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 642 (732)
Q Consensus 569 ~~i--~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs--Dg~I 642 (732)
... ..+........++++|+++.|+++. .++.|..||...+....... ........|+|+|++++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333335577889999545555555 56899999998776522222 1224578999999999776666 6789
Q ss_pred EEEECCCCCC-ceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCe
Q 004737 643 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 696 (732)
Q Consensus 643 ~IWDl~t~~~-~~~i~~~~~~---------------~~~I~-sl~fs--------pdg~~L~sgs-~dg~I~IwDl~t~~ 696 (732)
.+++...... ...+..+... -.... .+++. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 9988753210 0001111111 01122 45553 3344 55554 456899988 4566
Q ss_pred EEEEccC------------------CCCeeEEEEeCCCCEEEEEE-CCCeEEEe
Q 004737 697 TLTLSAH------------------DKLVSSLAASTVNGMVASAS-HDKCVKIW 731 (732)
Q Consensus 697 ~~~~~~h------------------~~~V~sla~spdg~~LaSgs-~DG~I~IW 731 (732)
...+.+. -.....|++++++..|+.+. ....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544332 12588999999644455444 45667654
No 269
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.55 E-value=4.5e-05 Score=80.92 Aligned_cols=220 Identities=7% Similarity=-0.006 Sum_probs=141.8
Q ss_pred CCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCe-EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737 471 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547 (732)
Q Consensus 471 Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg 547 (732)
...|+.++++... ....+. ....+..++|.+.... +++-...+.|..+++.........+...-.....+++.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678889887653 222222 2235678999985444 45555678999999886532222223223456789998877
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737 548 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 624 (732)
Q Consensus 548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~V~s 624 (732)
..++++-...+.|.++++........+ ........+++.|.++.++.+.. .+.|..+++........+...-...+.
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 170 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence 778777777889999998754333222 22345788999998888888774 578999998754333223333456789
Q ss_pred EEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe
Q 004737 625 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK 696 (732)
Q Consensus 625 la~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~ 696 (732)
|+|++++..|+.+. .+.|..+|+..... ..+. .........+++..+ .++.+. ..+.|..++..+++
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV--KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCC
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEe--cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCC
Confidence 99999877777776 67999999875322 2222 223344567777533 344444 45689999986665
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.54 E-value=0.00019 Score=75.78 Aligned_cols=219 Identities=9% Similarity=0.021 Sum_probs=140.0
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEec-cCCe
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 580 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~~-~~~i 580 (732)
+|+.+. ...|+..|+..... ...+. ....+..++|++.+..++++-..++.|..+++.. ......+.. -...
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987653 22333 3456789999998778887777789999999876 222222221 2356
Q ss_pred eEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCCCCceeE
Q 004737 581 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 656 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~~~~~~i 656 (732)
..+++++.++.|+++. ..+.|.++|+........+.........++++|.+.+|+.+. . +.|..+++.... ...+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~ 158 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 158 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence 7899998777776665 468999999986544444443445778999999776665555 3 688888876431 1111
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 657 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 657 ~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
....-.....+++++++..|+.+... +.|..+|+.......+. ........+++. .+.++++-...+.|..+
T Consensus 159 --~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 159 --VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp --ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred --EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 12234567899999988888877754 58999999764433322 223456788885 34444444455666654
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.53 E-value=0.00023 Score=77.91 Aligned_cols=231 Identities=8% Similarity=-0.037 Sum_probs=150.8
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCCC---ceeEEeecCCcce
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTV 538 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~~---~~~~~l~~h~~~V 538 (732)
.+|+.+. ...|+..+++.......+. ....+..|+|++....|+.+ ...+.|+.+++.... .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3555544 4689999988765554444 44568899999866655555 456889999987521 1122333234567
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEE
Q 004737 539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKL 615 (732)
Q Consensus 539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l 615 (732)
..+++.+.+..++++-...+.|.+.++........+. .......+++.|.+++|+.+.. .+.|..+++........+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 8899998767788777778899999998655444443 2345789999998888887774 378999998765444334
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEC
Q 004737 616 QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNM 692 (732)
Q Consensus 616 ~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl 692 (732)
...-.....|++++++..|+.+. .+.|..+|+..... ..+......-.....+++. +..|+.+. ..+.|..+|.
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEES
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEc
Confidence 43446789999999888777776 66899999875422 2222221222344566663 33455544 4458888886
Q ss_pred CCCeEE
Q 004737 693 TENKTL 698 (732)
Q Consensus 693 ~t~~~~ 698 (732)
.+++.+
T Consensus 319 ~~G~~~ 324 (400)
T 3p5b_L 319 LTGSDV 324 (400)
T ss_dssp SSCCCC
T ss_pred CCCCce
Confidence 666433
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.53 E-value=0.00011 Score=78.87 Aligned_cols=228 Identities=9% Similarity=0.045 Sum_probs=146.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004737 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~ 574 (732)
.+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345555553 344444 344588888876442 3333334458899999887778877777889999999866544433
Q ss_pred ec-cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCC
Q 004737 575 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 649 (732)
Q Consensus 575 ~~-~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t 649 (732)
.. ......+++.+.++.|+.+.. .+.|.++++........+...-.....|+++|.+.+|+... + +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 32 234678999987777776665 57999999886544444444445679999999777666655 4 6888888865
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 727 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~-~~~h~~~V~sla~spdg~~LaSgs~DG~ 727 (732)
... .............++|++++..|+.+... +.|+.+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CSC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 321 11112233457899999988878877654 589999987654332 33334567788883 3434444334555
Q ss_pred EEE
Q 004737 728 VKI 730 (732)
Q Consensus 728 I~I 730 (732)
|..
T Consensus 268 V~~ 270 (349)
T 3v64_C 268 INS 270 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.52 E-value=1.5e-05 Score=92.05 Aligned_cols=251 Identities=9% Similarity=-0.021 Sum_probs=149.8
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccCC----CceEE-EEEcCCCCeEEEEe------CCCeEEEEecCCCCceeEEeec
Q 004737 465 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 533 (732)
Q Consensus 465 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~-l~fspdg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l~~ 533 (732)
|++++.|+.|..+|..+|+.+-...... ..+++ ..+. ++ .+++++ .++.|+.+|..+++..-+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999886654322 01211 1111 34 455554 3899999999998854333222
Q ss_pred CCc------------------------------------ce-EEEEEcCCCCcEEEEEeCC----------------CcE
Q 004737 534 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 560 (732)
Q Consensus 534 h~~------------------------------------~V-~sl~fspdg~~llaSgs~D----------------g~I 560 (732)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 00 1345556644444 44433 479
Q ss_pred EEEECCCCeeeeEEeccCC----------eeEEEEe-CCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------
Q 004737 561 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 619 (732)
Q Consensus 561 ~iWDl~t~~~i~~~~~~~~----------i~~v~~s-p~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------- 619 (732)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999887774321 1112222 455 346667789999999999999887654211
Q ss_pred ------CCE--------------------------EEEEEeCCCCEEEEEe-----------------------------
Q 004737 620 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 638 (732)
Q Consensus 620 ------~~V--------------------------~sla~spdg~~Lasgs----------------------------- 638 (732)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1356777666554431
Q ss_pred -----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-C
Q 004737 639 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K 705 (732)
Q Consensus 639 -----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~-~ 705 (732)
+|.|..||+.+++ .+-.... ..+...-.+...+..+++++.|+.|+.||.++++.+ .+.... .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~---~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGD---YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCC---EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCC---EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 2567788887773 3333221 111221123335667888999999999999999988 443222 2
Q ss_pred CeeEEEEeCCCC-EEEEE
Q 004737 706 LVSSLAASTVNG-MVASA 722 (732)
Q Consensus 706 ~V~sla~spdg~-~LaSg 722 (732)
...-+.|..+|+ |+++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 223355566776 44443
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.52 E-value=7.9e-06 Score=97.08 Aligned_cols=238 Identities=10% Similarity=0.042 Sum_probs=134.7
Q ss_pred CeEEEEEc-CCCCEEEEEEC-CC----cEEEEEcCCC-eEEE-EeccCCCceEEEEEcCCCCeEEEEeCC-----CeEEE
Q 004737 452 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 518 (732)
Q Consensus 452 ~V~~lafS-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~I 518 (732)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 22 5999999998 6321 111 123468899999988877765 36888
Q ss_pred EecCCCCce-eEEee-cCCcceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC--ee--eeEEec-cCCeeEEEEeCCC
Q 004737 519 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC--AGVFKC-QSGATQMRFQPRL 589 (732)
Q Consensus 519 WDl~s~~~~-~~~l~-~h~~~V~sl~fspdg~~llaSgs~--Dg~I~iWDl~t~--~~--i~~~~~-~~~i~~v~~sp~g 589 (732)
+++.++... ...+. ........+.|+||++.++++... ...|+++|+.++ +. ...... ......+.|.. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888775422 22332 223456788999999888877643 346888999875 22 222221 12234444433 5
Q ss_pred CEEEEEEcC-----CeEEEEECCCCeEEEE-EcCCCC--CEEEEEEeCCCCEEEEE-e-CC--eEEEEEC-------CCC
Q 004737 590 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 650 (732)
Q Consensus 590 ~~ll~~s~d-----g~I~IwDl~t~~~i~~-l~~h~~--~V~sla~spdg~~Lasg-s-Dg--~I~IWDl-------~t~ 650 (732)
+.|+..+.. ..|.++|+.+...... +..+.. .+..+.+. +..|+.. . ++ .|.++|+ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666665543 2688888875211111 222333 34455554 4555444 4 77 4666675 232
Q ss_pred CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcCC---eEEEEECCCCeEE
Q 004737 651 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCYE---TLELWNMTENKTL 698 (732)
Q Consensus 651 ~~~~~i~~~~~~~-~~I~sl~f----spdg~~L-~sgs~dg---~I~IwDl~t~~~~ 698 (732)
. .+..+.... ..+..+.+ ++++..+ ++.+... .++.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 022222111 12233322 3455434 4444332 6888888877654
No 275
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=4.4e-05 Score=87.90 Aligned_cols=256 Identities=10% Similarity=0.029 Sum_probs=152.2
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC----ceE-EEEEcC---CCC-eEEEEe------CCCeEEEEecCCCCc
Q 004737 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-DVRFSP---SLS-RLATSS------ADRTVRVWDTENPDY 526 (732)
Q Consensus 462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----~V~-~l~fsp---dg~-~Lasgs------~Dg~I~IWDl~s~~~ 526 (732)
+..+++++.|+.|..+|.++|+.+-....... .+. ...+.. +++ .+++++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999876643221 111 111111 233 555554 378999999998875
Q ss_pred eeEEeecCCcc-----------------------------------------eEEEEEcCCCCcEEEEEe----------
Q 004737 527 SLRTFTGHSTT-----------------------------------------VMSLDFHPSKEDLLCSCD---------- 555 (732)
Q Consensus 527 ~~~~l~~h~~~-----------------------------------------V~sl~fspdg~~llaSgs---------- 555 (732)
... ....... -..+++.|+...+++..+
T Consensus 197 ~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWM-RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEE-EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Eee-cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 332 2211000 012455666444443332
Q ss_pred --C-------C----CcEEEEECCCCeeeeEEeccC-------CeeE-EEEe---CCCC---EEEEEEcCCeEEEEECCC
Q 004737 556 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET 608 (732)
Q Consensus 556 --~-------D----g~I~iWDl~t~~~i~~~~~~~-------~i~~-v~~s---p~g~---~ll~~s~dg~I~IwDl~t 608 (732)
. | +.|..+|..+++.+..+.... .+.. +.+. .+++ .+++++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 589999999999998876421 1111 2222 4553 577788899999999999
Q ss_pred CeEEEEEcCCCC--CE-------------------------------------------EEEEEeCCCCEEEEEe-----
Q 004737 609 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 638 (732)
Q Consensus 609 ~~~i~~l~~h~~--~V-------------------------------------------~sla~spdg~~Lasgs----- 638 (732)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876553210 00 1245666544444321
Q ss_pred -----------------------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737 639 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 689 (732)
Q Consensus 639 -----------------------------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I 689 (732)
+|.|..||+.+++ .+-..... .++..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~---~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK---VVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC---EEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC---EEEEecCC-CCCcccceEeCCCEEEEECCCCcEEE
Confidence 4678899998873 33333222 12222222234667888999999999
Q ss_pred EECCCCeEE-EEccCCCC-eeEEEEeCCCC-EEEEE
Q 004737 690 WNMTENKTL-TLSAHDKL-VSSLAASTVNG-MVASA 722 (732)
Q Consensus 690 wDl~t~~~~-~~~~h~~~-V~sla~spdg~-~LaSg 722 (732)
||.++++.+ .+...... ..-+.|..+|+ ||++.
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999988 44332221 12366667776 44443
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=8.5e-05 Score=80.94 Aligned_cols=228 Identities=9% Similarity=0.031 Sum_probs=147.8
Q ss_pred EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737 496 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~ 575 (732)
.|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.|++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 3344444 345788888876543 23333345688999998877888777778899999998765444333
Q ss_pred c-cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCC
Q 004737 576 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 650 (732)
Q Consensus 576 ~-~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~ 650 (732)
. ......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. + +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234677899987777776665 57899999876544444444446789999999877776666 4 67888888654
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
. ..............++|+|++..|+.+... +.|+.+|+...... .+.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 111222233457899999988878777654 48999998765433 233334567788883 34444444455566
Q ss_pred EEe
Q 004737 729 KIW 731 (732)
Q Consensus 729 ~IW 731 (732)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=7.5e-05 Score=82.76 Aligned_cols=234 Identities=14% Similarity=0.121 Sum_probs=138.1
Q ss_pred ceEEEEEcCC--CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC---C-cEEEEECCC
Q 004737 494 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 567 (732)
Q Consensus 494 ~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g-~I~iWDl~t 567 (732)
....|+|+|+ ...|+.+...+.|+.+|..++. +..+.........++|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 4456665544889999987654 444444455689999999987 65554321 1 233333322
Q ss_pred Cee-eeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEE-c-CCCCCEEEEEEeCCCCEEEEEe--CCe
Q 004737 568 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS--DEL 641 (732)
Q Consensus 568 ~~~-i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l-~-~h~~~V~sla~spdg~~Lasgs--Dg~ 641 (732)
+.. ...+........++++++.+.|+++. .++.|+.+|..++.....+ . +....-..|+|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 11222234567788999445555544 5688999999877652222 2 1222345799999999777666 678
Q ss_pred EEEEECCC--CCCc--eeEEEeec------------CCCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 642 VRVWSIGS--GSKG--ECIHELSC------------TGNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTENK 696 (732)
Q Consensus 642 I~IWDl~t--~~~~--~~i~~~~~------------~~~~I~sl~f---------spdg~~L~sgs~dg~I~IwDl~t~~ 696 (732)
|+.+++.. +... ..+..... .-.....+++ .+++.++++-...+.|+.++. ++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 99988763 2111 11111100 1123566888 566664444445568999985 566
Q ss_pred EEEEccC------------------CCCeeEEEEe-CCCCEEEEEECCCeEEEe
Q 004737 697 TLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 731 (732)
Q Consensus 697 ~~~~~~h------------------~~~V~sla~s-pdg~~LaSgs~DG~I~IW 731 (732)
..++.+. -.....|+++ +++.++++-...+.|+.+
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 5544322 1247889999 455544444455677664
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.39 E-value=0.00029 Score=74.59 Aligned_cols=221 Identities=10% Similarity=0.026 Sum_probs=140.8
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEe-ccCCeeEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQM 583 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-~~~~-~~~~i~~v 583 (732)
+|+.+ ....|+.+|++...............+..++|++.+..++++-...+.|..+++...... ..+. .-.....+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 34443 356799999987542222222223457799999877778877777889999999865322 1222 22456789
Q ss_pred EEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEEe
Q 004737 584 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL 659 (732)
Q Consensus 584 ~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~ 659 (732)
++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. .+.|..+++..... ..+ .
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~--~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FII--I 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEE--E
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEE--E
Confidence 99987777766654 57999999886543333434456678999999766666555 35788888764321 111 2
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEE-ccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 660 SCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 660 ~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~-~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
...-.....++|++++..|+.+... +.|+.+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 2223456899999988878877654 5899999875443332 23445677788753 3344443345556544
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.39 E-value=0.00012 Score=75.15 Aligned_cols=199 Identities=11% Similarity=0.148 Sum_probs=130.8
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 607 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~ 607 (732)
.+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455667899999999988888888889999999998 8888887643 467888998886544544456789999876
Q ss_pred CCe---EEEEEc------CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-------cCCCceEEEE
Q 004737 608 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 670 (732)
Q Consensus 608 t~~---~i~~l~------~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-------~~~~~I~sl~ 670 (732)
... .+.... ........|+|+|.+..|+++. .+...||.+........+.... ..-..+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 1234568999999987777766 3334444443110001111111 1234578999
Q ss_pred EeCCCCEEEEEEcC-CeEEEEECCCCeEE-E--Ec-cC------CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 671 FHPTFPSLLVIGCY-ETLELWNMTENKTL-T--LS-AH------DKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 671 fspdg~~L~sgs~d-g~I~IwDl~t~~~~-~--~~-~h------~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
++|....+++.+.. ..|.++|.... .+ . +. +. -.....|+|.++|++ +..++...++++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEE
Confidence 99987666666655 48889997655 44 2 22 11 135789999999984 444777766655
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.38 E-value=0.00011 Score=78.42 Aligned_cols=185 Identities=14% Similarity=0.209 Sum_probs=130.2
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC----CC---eEEEEeC---CCeEEEEecCCCCceeEE
Q 004737 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 530 (732)
Q Consensus 461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd----g~---~Lasgs~---Dg~I~IWDl~s~~~~~~~ 530 (732)
...+++.....+-+.|||+ +++.+..+.. +.+..|..-|+ ++ ++++... +++|++|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445666667789999999 8888888854 55777776663 22 2333333 579999987522223444
Q ss_pred eec------CC-cceEEEEE--cCC-CCcEEEEEeCCCcEEEEECC-------CCeeeeEEeccCCeeEEEEeCCCCEEE
Q 004737 531 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 593 (732)
Q Consensus 531 l~~------h~-~~V~sl~f--spd-g~~llaSgs~Dg~I~iWDl~-------t~~~i~~~~~~~~i~~v~~sp~g~~ll 593 (732)
+.. .. ..+..+|+ +|. +..+++....+|.+..|++. +.+.++.+...+.+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 56777887 664 44567788889999999982 346778888888899999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEc-CC-CCCEEEEEEe--CCCC-EEEEEe--CCeEEEEECC
Q 004737 594 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCWN--TSGE-YLASVS--DELVRVWSIG 648 (732)
Q Consensus 594 ~~s~dg~I~IwDl~-----t~~~i~~l~-~h-~~~V~sla~s--pdg~-~Lasgs--Dg~I~IWDl~ 648 (732)
++-.+..|..||.+ +.+.+..+. ++ ...+..|++. ++++ ||++++ ++.+.+||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888866 345565543 22 2368888884 5555 777777 7799999996
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.00049 Score=75.27 Aligned_cols=219 Identities=9% Similarity=0.014 Sum_probs=142.6
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-ccCCe
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 580 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----~~i~~~~-~~~~i 580 (732)
+|+.+. ...|+..+++.... ..+......+..++|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 46899999986553 2333345678999999987778877777889999998752 2222222 22457
Q ss_pred eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeE
Q 004737 581 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 656 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i 656 (732)
..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+... .+.|...++..... .
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---Y 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---E
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---E
Confidence 78999986677776665 67999999987655555544455689999999776666655 36888888875421 1
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 657 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 657 ~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
......-.....+++++++..|+.+... +.|+.+|+.......+.. .-....+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 1222233567899999988888888654 589999987655443322 23456677773 23344444444556544
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.37 E-value=3.9e-05 Score=91.11 Aligned_cols=192 Identities=10% Similarity=0.025 Sum_probs=115.0
Q ss_pred ceEEEEEc-CCCCeEEEEeC-CC----eEEEEecCCC-CceeEEeecCCcceEEEEEcCCCCcEEEEEeCC----CcEEE
Q 004737 494 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 562 (732)
Q Consensus 494 ~V~~l~fs-pdg~~Lasgs~-Dg----~I~IWDl~s~-~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D----g~I~i 562 (732)
.+...+|+ |||++||.+.. +| .|+++|+.++ ......+. .....+.|+||++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 22 5999999987 52111121 1235788999998888776532 36888
Q ss_pred EECCCCeee--eEEec--cCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCC--eE-EEEE-cCCCCCEEEEEEeCCC
Q 004737 563 WSINNGSCA--GVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC-RLKL-QGHKNQVHSVCWNTSG 631 (732)
Q Consensus 563 WDl~t~~~i--~~~~~--~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~--~~-i~~l-~~h~~~V~sla~spdg 631 (732)
+++.++... ..+.. ..-...+.|+|++++|+....+ ..|+++|+.++ .. +..+ ........++.|+..+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 999876422 23322 2235678999999998877643 47889999875 23 1333 3344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEE-EEEcCC--eEEEEEC
Q 004737 632 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLL-VIGCYE--TLELWNM 692 (732)
Q Consensus 632 ~~Lasgs-D--g--~I~IWDl~t~~~~~~i~~~~~~~~--~I~sl~fspdg~~L~-sgs~dg--~I~IwDl 692 (732)
.+++... + + .|.++|+.+......+ +..+.. .+..+.+. +..|+ +...++ .|+++++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777777642111110 112222 34444444 44444 445556 5777785
No 283
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=0.00012 Score=81.12 Aligned_cols=234 Identities=11% Similarity=0.143 Sum_probs=142.0
Q ss_pred CeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC-C----eEEEEecCCCC
Q 004737 452 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 525 (732)
Q Consensus 452 ~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g----~I~IWDl~s~~ 525 (732)
....|+|+| ++..|+++...+.|+++|.+++....... .......|+|++++++|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 467899998 45566666555889999998876554443 44568899999999966666542 1 34444433 22
Q ss_pred ce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEc-CCeE
Q 004737 526 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-ENYI 601 (732)
Q Consensus 526 ~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~-dg~I 601 (732)
.. ...+.. ......++++|++..++++-..++.|+.|+...+......... .....++|+|++++++++.. .+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 122222 2346788999955567767667889999999877653333322 34778999999997766664 6789
Q ss_pred EEEECCC--CeE--EEEEcCC---------------CCCEE-EEEEe--------CCCCEEEEEe-CCeEEEEECCCCCC
Q 004737 602 SILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 652 (732)
Q Consensus 602 ~IwDl~t--~~~--i~~l~~h---------------~~~V~-sla~s--------pdg~~Lasgs-Dg~I~IWDl~t~~~ 652 (732)
..++... +.. +..+.+. -.... .++.. +++.++++-. .+.|+.++. ++
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-- 371 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-- 371 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence 9987653 221 1111111 11223 45553 2344444433 678998883 33
Q ss_pred ceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 004737 653 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 693 (732)
Q Consensus 653 ~~~i~~~~~~------------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~ 693 (732)
. +..+.+. -.....+++++++..|+++.. +..|+.++++
T Consensus 372 -~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 -R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222111 124678899986445555554 4578777654
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.37 E-value=0.00044 Score=82.25 Aligned_cols=239 Identities=8% Similarity=-0.040 Sum_probs=152.4
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCC---ceeE
Q 004737 454 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD---YSLR 529 (732)
Q Consensus 454 ~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~---~~~~ 529 (732)
+|.++... .+|+.+ ....|+..++........+. ....+..|+|.+....| ++-...+.|+.+++.... ....
T Consensus 388 ~C~~~~~~-p~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSC-CEEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeecccc-cccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 34444332 244443 34678888887665544444 44567899999855544 455556889999987531 1122
Q ss_pred EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC--CeEEEEEC
Q 004737 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDV 606 (732)
Q Consensus 530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl 606 (732)
.+.........|++.+.+..|+++-...+.|.+.++........+. .-.....|++.|..++|+.+... +.|.+.++
T Consensus 465 vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3332345677899998887888888888999999998554433333 23458899999988888887753 68999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737 607 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684 (732)
Q Consensus 607 ~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d 684 (732)
........+...-.....|++++.+..|+.+. .+.|..+++..... ..+......-.....+++. +.+|+.+...
T Consensus 545 dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 86655444544456789999998877777776 56899999865432 2222211112234455553 3456666544
Q ss_pred -CeEEEEECCCCeEE
Q 004737 685 -ETLELWNMTENKTL 698 (732)
Q Consensus 685 -g~I~IwDl~t~~~~ 698 (732)
+.|...|..+++.+
T Consensus 622 ~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 622 NEAIFSANRLTGSDV 636 (791)
T ss_dssp TTEEEEEETTTCCCC
T ss_pred CCEEEEEeCCCCcce
Confidence 57888887666433
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.28 E-value=0.00098 Score=68.23 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=135.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737 444 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 521 (732)
Q Consensus 444 ~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl 521 (732)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+.- .......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4677777789999999976654 557778899999998 888877642 2245788999998887777667789999988
Q ss_pred CCCCc--eeEEee------cCCcceEEEEEcCCCCcEEEEEeCCC-cEEEEEC-CCCeeeeEEec--------cCCeeEE
Q 004737 522 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFKC--------QSGATQM 583 (732)
Q Consensus 522 ~s~~~--~~~~l~------~h~~~V~sl~fspdg~~llaSgs~Dg-~I~iWDl-~t~~~i~~~~~--------~~~i~~v 583 (732)
..... .+.... ........|+|+|.+..++++...+. .|+.|+- .....+..+.. -.....+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 112221 13445689999999878887666554 4555551 11112222211 1347899
Q ss_pred EEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEeCCCCEEEEEeCCeEEEEEC
Q 004737 584 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI 647 (732)
Q Consensus 584 ~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~---------~~V~sla~spdg~~LasgsDg~I~IWDl 647 (732)
+++|..+.+++.+.+ ..|.++|.... .+..+.-.. ..-..|+|.++|++++++-.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 999998888777764 68888997744 444433221 2568999999998666644556666643
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.27 E-value=0.00031 Score=77.75 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=139.6
Q ss_pred CCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----C-eEEEEecCC
Q 004737 451 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----R-TVRVWDTEN 523 (732)
Q Consensus 451 ~~V~~lafSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g-~I~IWDl~s 523 (732)
....+++|+|+ ...|+.+...+.|+.+|..++....... .......++|+++++ |+.+... . .+..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999985 3455555444899999998877665543 445689999999999 4444432 1 233333332
Q ss_pred CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Eecc--CCeeEEEEeCCCCEEEEEEc-CC
Q 004737 524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQ--SGATQMRFQPRLGRILAAAI-EN 599 (732)
Q Consensus 524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~~~--~~i~~v~~sp~g~~ll~~s~-dg 599 (732)
.......+. .-.....++++|++..++++-..++.|+.+|..++..... +... .....++|+|++++|+++.. .+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211111222 2344577889995456665666678899999987766322 2221 12346999999997777665 57
Q ss_pred eEEEEECC--CCeE--EEEEcCC---------------CCCEEEEEE---------eCCCCEEEEEe-CCeEEEEECCCC
Q 004737 600 YISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSG 650 (732)
Q Consensus 600 ~I~IwDl~--t~~~--i~~l~~h---------------~~~V~sla~---------spdg~~Lasgs-Dg~I~IWDl~t~ 650 (732)
.|+.+|.. ++.. ...+.+. -.....+++ .+++.++++-. .+.|++++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2311 1111111 124677999 66666665554 678999985 33
Q ss_pred CCceeEEEeecC------------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 004737 651 SKGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 693 (732)
Q Consensus 651 ~~~~~i~~~~~~------------------~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~ 693 (732)
.+..+.+. -.....++++|....|+++. .+..|+.++++
T Consensus 375 ----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 12356788884333345444 34577777654
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.20 E-value=6.1e-05 Score=87.93 Aligned_cols=228 Identities=7% Similarity=-0.029 Sum_probs=129.7
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------eEEEEecCCCCceeE-Ee-ecCCcceEEEEEcCCCCcEEEEEe-CCCcEE
Q 004737 497 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 561 (732)
Q Consensus 497 ~l~fsp-dg~~Lasgs~Dg-----------~I~IWDl~s~~~~~~-~l-~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~ 561 (732)
.+++.+ ++++++.|+.+. .+.+||..++..... .. ..+.....++++..++ .+++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence 566777 888888887643 688999988764322 22 1233334456777776 4555665 556899
Q ss_pred EEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----cCCCCCEEEEEEeC
Q 004737 562 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 629 (732)
Q Consensus 562 iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s-~d-----g~I~IwDl~t~~~i~~l----~~h~~~V~sla~sp 629 (732)
+||..+.+....-... ..-..+++.++++.+++|+ .+ ..+.+||..+.+....- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9999877654432221 2234556667888888888 34 57999999887644320 00000000011123
Q ss_pred CCCEEEEEe----------CCeEEEEECCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 004737 630 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 685 (732)
Q Consensus 630 dg~~Lasgs----------Dg~I~IWDl~t~~~~~~i~~~~~------~~~~I~sl~fsp-dg~~L~sgs~dg------- 685 (732)
++..++.++ ...+..||..+............ ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 333333332 34678899877632211111111 011224445544 666667776432
Q ss_pred ----eEEEEECCCCeEEEEc---cCCCC-eeEEEEeCCCCEEEEEECC
Q 004737 686 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 725 (732)
Q Consensus 686 ----~I~IwDl~t~~~~~~~---~h~~~-V~sla~spdg~~LaSgs~D 725 (732)
.|.+||..+....... .+... -.++++.+++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766443 22222 2445667899999999865
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00047 Score=77.22 Aligned_cols=234 Identities=12% Similarity=0.079 Sum_probs=137.8
Q ss_pred ceEEEEEcC-CCCeEEEEe-CCCeEEEEecCCCCceeEEeecC----CcceEEEEE-------cCCCCcEEEEEeCCC--
Q 004737 494 WITDVRFSP-SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 558 (732)
Q Consensus 494 ~V~~l~fsp-dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h----~~~V~sl~f-------spdg~~llaSgs~Dg-- 558 (732)
....|+|+| +...|+.+. ..+.|++.|+.++. +..+..- ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 344455544 34678888888754 3333221 235789999 999876776665542
Q ss_pred ----cEEEEECCC-Ceee-----eEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 004737 559 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 611 (732)
Q Consensus 559 ----~I~iWDl~t-~~~i-----~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~-------t~~~--------- 611 (732)
.|.+++... +... ..+........++++|+++.|+++. .++.|+.||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776443 2221 2222224567789999767766665 46789999987 4432
Q ss_pred -----EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCC----ceeEEEeecCC------------CceE-
Q 004737 612 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTG------------NKFH- 667 (732)
Q Consensus 612 -----i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~----~~~i~~~~~~~------------~~I~- 667 (732)
+..+ +.......|+|+|++++|+.+. ...|+.++...... ...+....... ....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 2222 2334568999999999766665 66899876543211 01111110000 1233
Q ss_pred EEEEe-------CCCCEEEEEEcCCeEEEEECCCCeEEEEccC------------------------CCCeeEEEEeCCC
Q 004737 668 SCVFH-------PTFPSLLVIGCYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTVN 716 (732)
Q Consensus 668 sl~fs-------pdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h------------------------~~~V~sla~spdg 716 (732)
.++.. .++.++++=..+..|+.++ .++...++.+. -.....|++++++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 44554 4455444444556899998 56666555332 1246789999973
Q ss_pred CEEEEEE-CCCeEEEe
Q 004737 717 GMVASAS-HDKCVKIW 731 (732)
Q Consensus 717 ~~LaSgs-~DG~I~IW 731 (732)
..|+.+. ...+|+.+
T Consensus 456 g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEE
Confidence 4444444 55677765
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0025 Score=75.70 Aligned_cols=216 Identities=9% Similarity=0.029 Sum_probs=139.7
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-ccCCe
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 580 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----~~i~~~~-~~~~i 580 (732)
+|+.+ ....|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. .-...
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34443 445688888876543 3333345678899999877778877777788999998753 2222332 22457
Q ss_pred eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCCCCceeE
Q 004737 581 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 656 (732)
Q Consensus 581 ~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~~~~~~i 656 (732)
..+++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+... + +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988877777765 57999999987655444444556689999999866666655 3 67888888654 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEE-CCCeEE
Q 004737 657 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 729 (732)
Q Consensus 657 ~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs-~DG~I~ 729 (732)
..+...-.....|++++....|+.+... ..|..+++.......+.. .-....+|++. +.+|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2222334568899999888888887654 489999997665443322 22345566664 33455444 334444
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.11 E-value=0.0024 Score=73.98 Aligned_cols=219 Identities=9% Similarity=0.009 Sum_probs=144.8
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEE
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 584 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~ 584 (732)
+|+.+ ....|+..|++............-..+..|+|++.+..++++-..++.|+.+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 456899999987553222222233468899999988888878778899999999765444444322 3577899
Q ss_pred EeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEEee
Q 004737 585 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 660 (732)
Q Consensus 585 ~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~ 660 (732)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+... .+.|...++..... ..+.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~--- 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV--- 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE---
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE---
Confidence 9988787777665 57899999976543333333445678999999666666555 45788888765422 2221
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEe
Q 004737 661 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW 731 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IW 731 (732)
........+++++++..|+.+... +.|..+|+.......+.........+++.. + .|+.+. ..+.|...
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERA 233 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEE
Confidence 244567899999988888887764 489999987654443333444567888764 3 444444 35566543
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.0012 Score=73.80 Aligned_cols=241 Identities=14% Similarity=0.137 Sum_probs=144.2
Q ss_pred CeEEEEEcC-CCC-EEEEEECCCcEEEEEcCCCeEEEEeccC---CCceEEEEE-------cCCCCeEEEEeCCC-----
Q 004737 452 KVESCHFSP-DGK-LLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 514 (732)
Q Consensus 452 ~V~~lafSp-dg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~V~~l~f-------spdg~~Lasgs~Dg----- 514 (732)
....|+|+| +.. ++++....+.|++.|.+++.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 367899998 344 4444444578999999887776655432 235899999 99999777776554
Q ss_pred --eEEEEecCC-CCce----eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-------CCee----------
Q 004737 515 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 570 (732)
Q Consensus 515 --~I~IWDl~s-~~~~----~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-------t~~~---------- 570 (732)
.|.+++... +... ...+... .....++++|++..|+++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 256665443 1221 0222222 2456788999777888888888999999997 5543
Q ss_pred -e-eEEec--cCCeeEEEEeCCCCEEEEEEc-CCeEEEEEC--CCCeEE--EEEcC---CC------------CCEE-EE
Q 004737 571 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVCR--LKLQG---HK------------NQVH-SV 625 (732)
Q Consensus 571 -i-~~~~~--~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl--~t~~~i--~~l~~---h~------------~~V~-sl 625 (732)
. ..+.. ......++|+|+++.++++.. ...|+.+|. .++... ..+.+ .. .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 11222 233678999999997666665 578888654 333220 12211 11 1234 45
Q ss_pred EEe-------CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC------------------------CCceEEEEEeC
Q 004737 626 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 673 (732)
Q Consensus 626 a~s-------pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~------------------------~~~I~sl~fsp 673 (732)
+.. .++.++++-. ...|+.++. ++ .+.++.+. -.....+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 3455554444 679999983 33 22222221 12356788888
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCeEE
Q 004737 674 TFPSLLVIGC-YETLELWNMTENKTL 698 (732)
Q Consensus 674 dg~~L~sgs~-dg~I~IwDl~t~~~~ 698 (732)
+...|+++.. +..|+.++++.....
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 6334555554 447888887665544
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.05 E-value=0.00092 Score=71.74 Aligned_cols=225 Identities=8% Similarity=0.068 Sum_probs=121.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEec---cCCCceEEEEEcCC---CCeEEEEeC-C-----CeE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV 516 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~---~h~~~V~~l~fspd---g~~Lasgs~-D-----g~I 516 (732)
..-.+++|.|||+++++ ..++.|++++ +++.. ..+. ........|+|+|+ +..|+++.. + ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35779999999985554 5679999998 44422 2221 22356889999998 555555443 2 578
Q ss_pred EEEecCCCCc-----eeEEee---cCCcceEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC-------
Q 004737 517 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------- 568 (732)
Q Consensus 517 ~IWDl~s~~~-----~~~~l~---~h~~~V~sl~fspdg~~llaSgs~-------------Dg~I~iWDl~t~------- 568 (732)
..|+...... .+..+. +.......++|.|+|. ++++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888764321 111122 1112346899999984 4444321 245666665420
Q ss_pred -----eeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEcC
Q 004737 569 -----SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQG 617 (732)
Q Consensus 569 -----~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d-g~--------I~IwDl~t----------------~~~i~~l~~ 617 (732)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 265 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP- 265 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence 1111111 22336778999954555555443 22 33332111 01222222
Q ss_pred CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737 618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 618 h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~---~~i~~~~~~~~~I~sl~fspdg~~L~sg 681 (732)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|||..+++.
T Consensus 266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 4565555444 667888877643210 0112222234678899999999755444
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.05 E-value=0.0015 Score=75.73 Aligned_cols=223 Identities=7% Similarity=-0.006 Sum_probs=137.7
Q ss_pred CCCcEEEEEcCCCe-EEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737 470 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547 (732)
Q Consensus 470 ~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg 547 (732)
....|++.++.... ....+...-..+..++|++.+..|+.+. ..+.|..++++........+...-.....+++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888887643 2222233445678999998766666554 467899999875432122333333568899999987
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737 548 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 624 (732)
Q Consensus 548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~V~s 624 (732)
..++++-...+.|.+.++........+ ..-.....+++.|.+++++.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 788878778899999999854433333 22345788999998888888775 367888887754333333334557899
Q ss_pred EEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE
Q 004737 625 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKT 697 (732)
Q Consensus 625 la~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~ 697 (732)
|++++++..|+.+. .+.|..+|+........+. ........+++..+ .|+.+. ..+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 99999877777776 5689999987542211111 11122235566544 455554 345888888877653
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.03 E-value=0.021 Score=59.91 Aligned_cols=248 Identities=9% Similarity=0.149 Sum_probs=153.7
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcE
Q 004737 471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 550 (732)
Q Consensus 471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~l 550 (732)
+..|.|.|+.....+.+..-.. -+.-.+|..+.||.=. ..++.|+|+++.. .++.+.- ...|..-.|-.+. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~A---dsAIMnP~~~ViALra-g~~LQiFnletK~-klks~~~-~e~VvfWkWis~~-~L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISA---DSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLN-TV 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCC---SEEEECSSSSEEEEEE-TTEEEEEETTTTE-EEEEEEC-SSCEEEEEECSSS-EE
T ss_pred CCEEEEEECCCCCCcccccccc---ceeeeCCCccEEEEec-CCeEEEechHHhh-hhcceec-CCccEEEEecCCC-eE
Confidence 3478888988755442221111 1233588878777665 6799999999865 3555543 4578888887653 33
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEecc-----CCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004737 551 LCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 617 (732)
Q Consensus 551 laSgs~Dg~I~iWDl~t-~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~ 617 (732)
.+.+ +..|+.|++.. ..+.+.+..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 121 ~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 197 (365)
T 2xzh_A 121 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 197 (365)
T ss_dssp EEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred EEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeee
Confidence 3333 56899999974 4566666533 33777788899898776553 3678899988653 345666
Q ss_pred CCCCEEEEEEeCC---CCEEEEEe----CCeEEEEECCCCC--C---ceeEEE-eec---CCCceEEEEEeCCCCEEEEE
Q 004737 618 HKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSGS--K---GECIHE-LSC---TGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 618 h~~~V~sla~spd---g~~Lasgs----Dg~I~IWDl~t~~--~---~~~i~~-~~~---~~~~I~sl~fspdg~~L~sg 681 (732)
|......+.+.-+ ..+++.+. .++++|.++.... . .+.... +-. ...--.++..++....++..
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 6544433332211 12444444 2589999985431 1 111111 111 23445678899999999999
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
+..|.|++||++++.++ .-.-....|...+.+.+..=++.....|.|
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 99999999999999988 333344455544444443334444566654
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.02 E-value=0.0068 Score=70.08 Aligned_cols=277 Identities=8% Similarity=-0.012 Sum_probs=161.1
Q ss_pred CCCeEEEEEcCCCCEEEE-EECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCc
Q 004737 450 TSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDY 526 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Las-gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~ 526 (732)
-.....+++.+.+..|+. -...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 356889999996665544 456789999998765443334344456789999997666665554 35677777764332
Q ss_pred eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEc-CCeEEEE
Q 004737 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISIL 604 (732)
Q Consensus 527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~-dg~I~Iw 604 (732)
.......-.....|++++++..++++-...+.|..+|+.......... .-.....+++..+ .++.+.. .+.|...
T Consensus 163 -~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 163 -FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILAC 239 (619)
T ss_dssp -EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEE
T ss_pred -EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEE
Confidence 222222345678999999877787776777889999987544333222 1123455666554 5555554 5788888
Q ss_pred ECCCCeEEEEEcC-----------CC--------------CCEEEEE-----------EeCCC---------------CE
Q 004737 605 DVETQVCRLKLQG-----------HK--------------NQVHSVC-----------WNTSG---------------EY 633 (732)
Q Consensus 605 Dl~t~~~i~~l~~-----------h~--------------~~V~sla-----------~spdg---------------~~ 633 (732)
|..+++....+.. |. +....+| .+|.| .+
T Consensus 240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~ 319 (619)
T 3s94_A 240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL 319 (619)
T ss_dssp ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence 8876643322211 00 0000111 12211 24
Q ss_pred EEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEE-EccCCCCeeEEE
Q 004737 634 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLT-LSAHDKLVSSLA 711 (732)
Q Consensus 634 LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~~-~~~h~~~V~sla 711 (732)
|+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++....... +...-..+..++
T Consensus 320 Ll~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA 398 (619)
T 3s94_A 320 LLLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA 398 (619)
T ss_dssp EEEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence 555555667777776543211111111 1234678999997777777765 5689999987654332 223335678899
Q ss_pred EeCCCCEEEEEE-CCCeEEE
Q 004737 712 ASTVNGMVASAS-HDKCVKI 730 (732)
Q Consensus 712 ~spdg~~LaSgs-~DG~I~I 730 (732)
+...++.|+.+. ..+.|.+
T Consensus 399 vD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp EETTTTEEEEEETTTTEEEE
T ss_pred EecccCcEEEEeCCCCcEEE
Confidence 987665555444 4455554
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.00 E-value=0.028 Score=61.23 Aligned_cols=248 Identities=9% Similarity=0.146 Sum_probs=155.7
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcE
Q 004737 471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 550 (732)
Q Consensus 471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~l 550 (732)
+..|.|.|+.....+.+-.-. .-+.-.+|..+.||.=. ..++.|+|+++.. .++.+.- ...|..-.|-.+. .+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~-klks~~~-~e~VvfWkWis~~-~l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLN-TV 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTE-EEEEEEC-SSCCCEEEEEETT-EE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhh-hhcceec-CCCceEEEecCCC-eE
Confidence 347888998875544222111 12334678777777665 7799999999855 3555543 3467777887653 33
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEecc-----CCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004737 551 LCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 617 (732)
Q Consensus 551 laSgs~Dg~I~iWDl~t-~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~ 617 (732)
.+.+ +..|+.|++.. ..+.+.+..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..+++
T Consensus 120 ~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 3333 66899999974 4566666533 34777888999999876553 4678899988653 345667
Q ss_pred CCCCEEEEEEeCC---CCEEEEEe----CCeEEEEECCCCC-----CceeEEEee----cCCCceEEEEEeCCCCEEEEE
Q 004737 618 HKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSGS-----KGECIHELS----CTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 618 h~~~V~sla~spd---g~~Lasgs----Dg~I~IWDl~t~~-----~~~~i~~~~----~~~~~I~sl~fspdg~~L~sg 681 (732)
|......+.+..+ ..+++.+. .++++|.++.... ..+....+. ....--.++.+++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 7554444433221 12444444 2699999996531 111111111 123445678899999999999
Q ss_pred EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
+..|.|++||++++.++ .-.-....|...+.+....=++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999988 333344455555555444444545566654
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.00 E-value=0.0083 Score=69.48 Aligned_cols=224 Identities=8% Similarity=-0.010 Sum_probs=149.6
Q ss_pred EEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737 464 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 541 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl 541 (732)
+|+.+ ....|+..++++......+. ..-..+..|+|++....|+ +-..++.|..++++.... ...+.........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 44444 45789999998765443332 2234688999998665555 445678999999876432 22333223457789
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCC
Q 004737 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 618 (732)
Q Consensus 542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h 618 (732)
++.+.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998877788877777889999999754332222 22345789999998888888774 4688888887654333333 4
Q ss_pred CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 004737 619 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 695 (732)
Q Consensus 619 ~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~ 695 (732)
-.....|++++++..|+.+. .+.|..+|+..... +.+ .........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~---~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI---ADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE---EECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe---eccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56788999999888777777 67999999976432 222 22233455777765 35666654 568988887665
Q ss_pred e
Q 004737 696 K 696 (732)
Q Consensus 696 ~ 696 (732)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.98 E-value=0.0019 Score=68.38 Aligned_cols=230 Identities=11% Similarity=0.044 Sum_probs=130.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec---cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-CC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD 525 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-~~ 525 (732)
...+.+|.|.+ +..++ ++.++.|.. ..+.++.-..+. .+...+..|.+.+++..++++ .++.| |...+ +.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 44688999976 44444 455665443 333344333332 234567888887776666555 45543 22222 22
Q ss_pred ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE-EEC--CCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 602 (732)
Q Consensus 526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i-WDl--~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~ 602 (732)
.-......+...+..+.+.+++ .+++.+. +|.|+. +|- .+.+.+. ......+..+.+.+++. +++++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEE
Confidence 1122233455678999999875 4554554 454443 342 2222221 12235577888888865 55667788887
Q ss_pred EEECCCCeEEEEEcC----CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 603 ILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 603 IwDl~t~~~i~~l~~----h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
+.+...++.-..+.. +...+.++++.+++.+++++.++.| ++....+.....+.........++.+.|.+++ .+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence 765333333222221 2235889999998888888778877 45555553322221111123567888887555 47
Q ss_pred EEEEcCCeEEEEE
Q 004737 679 LVIGCYETLELWN 691 (732)
Q Consensus 679 ~sgs~dg~I~IwD 691 (732)
++++.+|.|..++
T Consensus 307 ~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 307 FILGQKGILLRYV 319 (327)
T ss_dssp EEECSTTEEEEEC
T ss_pred EEEcCCceEEEEc
Confidence 7888888877765
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.96 E-value=1.5e-05 Score=93.80 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=136.6
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCC---CceeEEeecCCcceEEEEEcCC
Q 004737 471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 546 (732)
Q Consensus 471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~---~~~~~~l~~h~~~V~sl~fspd 546 (732)
.+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887665544433 34567899998766666554 4578999998751 1111222112233567888866
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEEEEEcCCCCCEE
Q 004737 547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 623 (732)
Q Consensus 547 g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~t~~~i~~l~~h~~~V~ 623 (732)
+..++++-...+.|.++++........+.. ......++++|.+++|+.+... +.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 667776666678899999876544333332 2446788999987777766542 6888888764332222222234567
Q ss_pred EEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 004737 624 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL 700 (732)
Q Consensus 624 sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~ 700 (732)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+.+. ..+.|..++..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899999876666655 66899999875321 222111111122344555443 455444 456899999888877633
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.93 E-value=0.0063 Score=65.27 Aligned_cols=230 Identities=10% Similarity=0.052 Sum_probs=125.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-EEEEec---cCCCceEEEEEcCC---CCeEEEEeC----C----C
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 514 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~---~h~~~V~~l~fspd---g~~Lasgs~----D----g 514 (732)
-....+++|.|||++++ +..++.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997544 56679999997 4454 222221 22356889999997 555555433 3 5
Q ss_pred eEEEEecCCCC--c----ee-EEeec-CCcceEEEEEcCCCCcEEEEEeC------------CCcEEEEECCCCe-----
Q 004737 515 TVRVWDTENPD--Y----SL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGS----- 569 (732)
Q Consensus 515 ~I~IWDl~s~~--~----~~-~~l~~-h~~~V~sl~fspdg~~llaSgs~------------Dg~I~iWDl~t~~----- 569 (732)
.|..|+..... . .+ ..+.. .......|+|.|+|..++..++. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67777776531 1 11 11221 11234679999998544433321 2456666654220
Q ss_pred --eeeEE-eccCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCC--------C--------eEEEEEcCCCCCEEEEE
Q 004737 570 --CAGVF-KCQSGATQMRFQPRLGRILAAAIEN----YISILDVET--------Q--------VCRLKLQGHKNQVHSVC 626 (732)
Q Consensus 570 --~i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t--------~--------~~i~~l~~h~~~V~sla 626 (732)
....+ ........++|+++.+.|+++.... .|.+...-. + .++..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 01111 1234567899999555566655432 344433211 0 12223311234577888
Q ss_pred Ee-------CCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 004737 627 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 627 ~s-------pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sg 681 (732)
|. .+|.++++.. .+.|...++...........+ ......+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 84 4666665554 678888888753211111222 2224578899999999644443
No 301
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.90 E-value=0.039 Score=68.28 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=105.3
Q ss_pred cEEEEECCCCeeeeEEeccCC--eeEEEEe---CC-CCEEEEEE----------cCCeEEEEECCCCeEEEEE-cCCCCC
Q 004737 559 EIRYWSINNGSCAGVFKCQSG--ATQMRFQ---PR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQ 621 (732)
Q Consensus 559 ~I~iWDl~t~~~i~~~~~~~~--i~~v~~s---p~-g~~ll~~s----------~dg~I~IwDl~t~~~i~~l-~~h~~~ 621 (732)
.|+++|..+.+.+..+..... +.+++.. .+ ..++++|+ ..|.|++|++..++..... ...++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477788887777766664433 4444432 22 36777777 2478999998755332222 124678
Q ss_pred EEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCeEEE
Q 004737 622 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTLT 699 (732)
Q Consensus 622 V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t~~~~~ 699 (732)
|++++-- +| +|+++-..+|++|++...+... ...... ..|..+.....+.++++|..-..|.+ |+...++...
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 9988754 34 6777778899999998653222 111111 12333334345778999988886665 5555666664
Q ss_pred Ec--cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 700 LS--AHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 700 ~~--~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
+. .+..+++++.|-.+ ..++.+..+|.|.+.
T Consensus 963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 43 45667888888654 467778999999875
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0044 Score=65.48 Aligned_cols=202 Identities=9% Similarity=0.108 Sum_probs=125.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCeEEEE-ecc----CC--CceEEEEE---cCCCCeEEEEe----
Q 004737 447 PASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS---- 511 (732)
Q Consensus 447 ~~H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~-l~~----h~--~~V~~l~f---spdg~~Lasgs---- 511 (732)
+...---.|++|.+....|..++ ..++|..||...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 33344456789987555555555 789999999986544333 322 11 14689999 68877777544
Q ss_pred ---------CCCeEEEEecC---CCCceeE-EeecC-----------CcceEEEEEcCCCCcEEEEEeCC-CcEEEEECC
Q 004737 512 ---------ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN 566 (732)
Q Consensus 512 ---------~Dg~I~IWDl~---s~~~~~~-~l~~h-----------~~~V~sl~fspdg~~llaSgs~D-g~I~iWDl~ 566 (732)
.+..|..||+. +++.... .+... ...+..++..++|+.++ +++.. +.|..++..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCC
Confidence 26789999998 6553222 22111 12478999999986555 66666 777777776
Q ss_pred CCeeeeEEec-c------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEc--CC---CCCEEEE-EEeCCCC
Q 004737 567 NGSCAGVFKC-Q------SGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQ--GH---KNQVHSV-CWNTSGE 632 (732)
Q Consensus 567 t~~~i~~~~~-~------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~--~h---~~~V~sl-a~spdg~ 632 (732)
.. .+..+.. . .+.+.+++.|++..|++....+.|..+|+.+... ...+. +. -.....| ..-.+|+
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 43 2222221 1 2366899999999999998899999999885432 01111 21 1223443 3334777
Q ss_pred EEEEEe--CCeEEEEECCCC
Q 004737 633 YLASVS--DELVRVWSIGSG 650 (732)
Q Consensus 633 ~Lasgs--Dg~I~IWDl~t~ 650 (732)
.|+++. .+.+.+.+....
T Consensus 247 vllV~~~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDNW 266 (334)
T ss_dssp EEEEEEETTEEEEEECSSTT
T ss_pred EEEEEcCCCCEEEEECCCCc
Confidence 755554 556666665543
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.86 E-value=0.0026 Score=68.35 Aligned_cols=186 Identities=9% Similarity=0.067 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCeEEEE------------eCCCeEEEEecCCCCceeE--Eeec-----CCcceEEEEEcC--CCCc-EEE
Q 004737 495 ITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKED-LLC 552 (732)
Q Consensus 495 V~~l~fspdg~~Lasg------------s~Dg~I~IWDl~s~~~~~~--~l~~-----h~~~V~sl~fsp--dg~~-lla 552 (732)
..++.+.++|..++++ ..+|.|.++|..+...... .+.+ .......|.+.+ ++.. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4555666665444443 2689999999974322222 2222 234567777766 3443 443
Q ss_pred EEeC--CCcEEEEECCCC--eee--eEEec--cCCeeEEEEeCCCCEEEEEE-----------------cCCeEEEEECC
Q 004737 553 SCDN--NSEIRYWSINNG--SCA--GVFKC--QSGATQMRFQPRLGRILAAA-----------------IENYISILDVE 607 (732)
Q Consensus 553 Sgs~--Dg~I~iWDl~t~--~~i--~~~~~--~~~i~~v~~sp~g~~ll~~s-----------------~dg~I~IwDl~ 607 (732)
+-.. +..|.+|++... ... ..+.. -.....+.+.++|.++++.. ..|.|+.||..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 457777776543 222 22222 12378899999977665543 12567777664
Q ss_pred CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcC
Q 004737 608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCY 684 (732)
Q Consensus 608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~d 684 (732)
+ ... +...-...+.|+|+||+++|+.+. .+.|..|++...........+ ......-.+++.+ +|.+++++..+
T Consensus 212 ~--~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 212 D--VRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp C--CEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred e--EEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 2 222 222234578999999999888877 779999998743222222233 2356678889999 58866655534
No 304
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.85 E-value=0.032 Score=65.78 Aligned_cols=264 Identities=11% Similarity=0.079 Sum_probs=154.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 529 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~ 529 (732)
...|.++....+| .|..|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+... .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence 3568998887776 566666654 789998876543311112335777754 344 56666666 588888876542 3
Q ss_pred Eee-----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------cCCeeEEEEeCCCCEEEEEEcC
Q 004737 530 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 530 ~l~-----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~------~~~i~~v~~sp~g~~ll~~s~d 598 (732)
.+. .....|.++....++...+ +..+ -|..||..+++....... ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 331 1134588888777654333 3434 488889877654322111 123677877777776666664
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 673 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~-----~~~~~~I~sl~fsp 673 (732)
+.|..||..+++...........|.+++...+|.+.+.. ++-+.+++..+... ..+... .-....|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 578899988775432211123458888888888877654 55688888766421 111100 01234588888888
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-eEEEEc-----cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 674 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 674 dg~~L~sgs~dg~I~IwDl~t~-~~~~~~-----~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
++. |.+|+..| +.++..... +..... .....|.++....++.+.+ |+.+|.++
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~ 347 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR 347 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence 887 66666666 555433221 111111 1234688888777776554 44555433
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.0038 Score=66.52 Aligned_cols=180 Identities=11% Similarity=0.182 Sum_probs=119.1
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC----CCE--EEEEE-c---CCeEEEEEC--CCCeEEEEEc
Q 004737 549 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGR--ILAAA-I---ENYISILDV--ETQVCRLKLQ 616 (732)
Q Consensus 549 ~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~----g~~--ll~~s-~---dg~I~IwDl--~t~~~i~~l~ 616 (732)
.+++.....+-+.+||+ .++.+..+.. +.+..+.+-|. +.. +++++ . ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 34556677888999999 7888887754 56777777663 221 33333 3 478999976 3443 44442
Q ss_pred C------CC-CCEEEEEE--eCC-CC-EEEEEe-CCeEEEEECCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737 617 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 680 (732)
Q Consensus 617 ~------h~-~~V~sla~--spd-g~-~Lasgs-Dg~I~IWDl~t~----~~~~~i~~~~~~~~~I~sl~fspdg~~L~s 680 (732)
. .. ..+..+|+ ++. +. |+++.. +|.+..|++... ...+.+.++.. ...+..|++.+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 55677888 674 54 455555 899999998432 12345666654 567899999999999999
Q ss_pred EEcCCeEEEEECC-----CCeEEEEcc---CCCCeeEEEEe--CCCC-EEEEEE-CCCeEEEeC
Q 004737 681 IGCYETLELWNMT-----ENKTLTLSA---HDKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 732 (732)
Q Consensus 681 gs~dg~I~IwDl~-----t~~~~~~~~---h~~~V~sla~s--pdg~-~LaSgs-~DG~I~IWD 732 (732)
+-++..|..|+.+ +++.+...+ ....+..|++- ++++ +|++++ .+..+.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 344553332 22478888884 4555 666666 566777775
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.81 E-value=0.0062 Score=65.19 Aligned_cols=224 Identities=12% Similarity=0.070 Sum_probs=122.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eEEe---ecCCcceEEEEEcCC---CCcEEEEEeCC-----CcE
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 560 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l---~~h~~~V~sl~fspd---g~~llaSgs~D-----g~I 560 (732)
.....++|.|+|++++ +..++.|.+++ ++... +..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4568999999998555 45679999998 33211 1111 112356789999998 55665554432 678
Q ss_pred EEEECCCCee-----e-eEEec----cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 004737 561 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 609 (732)
Q Consensus 561 ~iWDl~t~~~-----i-~~~~~----~~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~-------- 609 (732)
..|+...+.. + ..+.. ......++|.|++..+++.+. .|.|..+|....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888764321 1 11221 112468999999865555432 256777776531
Q ss_pred ------eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeE------EEEECCCCCC---------------ceeEEEee
Q 004737 610 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 660 (732)
Q Consensus 610 ------~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I------~IWDl~t~~~---------------~~~i~~~~ 660 (732)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+.
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 01111 122 2356789999 666655544 2221 2333222210 11222232
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-------EEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~-------~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
.......++| .++..+++.-..+.|...+++... ...+......+..+++.|||.++++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234556777 355544443344577777765432 122223346799999999998776654
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.79 E-value=0.025 Score=69.91 Aligned_cols=271 Identities=11% Similarity=0.080 Sum_probs=148.2
Q ss_pred CCCeEEEEEcCC------CCEEEEEEC-CCcEEEEEcCCCeEEEEecc-CCCceEEEEEc--CCCCeEEEEeCCCeEEEE
Q 004737 450 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 519 (732)
Q Consensus 450 ~~~V~~lafSpd------g~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fs--pdg~~Lasgs~Dg~I~IW 519 (732)
...|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 469999996 99999999998777654321 11233444332 234578899999998766
Q ss_pred ecC--CCCcee-E-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEeccCCe-eEEEEeCC--CCE
Q 004737 520 DTE--NPDYSL-R-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGA-TQMRFQPR--LGR 591 (732)
Q Consensus 520 Dl~--s~~~~~-~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~~~i-~~v~~sp~--g~~ 591 (732)
.++ ++...- + .+.| ..++.-..|...+..-+++++ +....+|.-. ++... .+.. ..+ ....|+.. .+-
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g 708 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDS 708 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCc
Confidence 654 333211 1 2333 345555555544444443444 4444444433 22221 1112 223 23334332 233
Q ss_pred EEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-----------------------------
Q 004737 592 ILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----------------------------- 639 (732)
Q Consensus 592 ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg~~Lasgs-D----------------------------- 639 (732)
++. ..++.++|.-+... -.+.++. -...+..++++|+.+.++.+. +
T Consensus 709 ~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1158)
T 3ei3_A 709 LAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 786 (1158)
T ss_dssp EEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred EEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence 443 44556888776532 2333333 345678888888766544432 1
Q ss_pred --------------------CeEEEEECCCCCCceeEEEeecCC-CceEEEE---EeCC-CCEEEEEE----------cC
Q 004737 640 --------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CY 684 (732)
Q Consensus 640 --------------------g~I~IWDl~t~~~~~~i~~~~~~~-~~I~sl~---fspd-g~~L~sgs----------~d 684 (732)
..|+++|..+. +.+..+.-.. ..+.+++ |..+ ..++++|+ ..
T Consensus 787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred ccccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 12455555444 2333332222 2234443 3322 46788876 24
Q ss_pred CeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737 685 ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732 (732)
Q Consensus 685 g~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD 732 (732)
|.|++|++.++++. .....++.|++++-- .| +|++|- ...|+|||
T Consensus 864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~ 910 (1158)
T 3ei3_A 864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEE
T ss_pred eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEE
Confidence 68999999766544 333557889998854 35 444443 46788875
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0074 Score=63.72 Aligned_cols=209 Identities=10% Similarity=0.052 Sum_probs=131.6
Q ss_pred eccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeec----CC--cceEEEEE---cCCCCcEEEEEe--
Q 004737 488 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD-- 555 (732)
Q Consensus 488 l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~----h~--~~V~sl~f---spdg~~llaSgs-- 555 (732)
+....-.-.+++|.+....|+.++ ..++|..||...+......+.+ .. ..+..|.| .|+ ..++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 334445567889988666666666 7999999999855432222222 11 13579999 587 45555443
Q ss_pred -----------CCCcEEEEECC---CCeeeeEEecc--------------CCeeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 004737 556 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV 606 (732)
Q Consensus 556 -----------~Dg~I~iWDl~---t~~~i~~~~~~--------------~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl 606 (732)
.+..|..||+. +++.+...... .....++..++|+.+++.+.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26779999999 88877666531 247789999999999999998 99999888
Q ss_pred CCCeEEEEE-cC----CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-c---CCCceEE-EEEeCCC
Q 004737 607 ETQVCRLKL-QG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHS-CVFHPTF 675 (732)
Q Consensus 607 ~t~~~i~~l-~~----h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~---~~~~I~s-l~fspdg 675 (732)
.......-+ .. .....+.|+++|++..|++.. ++.|..+|+...... .+..-. + ....... +..-.+|
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence 755332211 11 122367999999999888877 889999999853210 122110 1 1122333 3334567
Q ss_pred CEEEEEE-cCCeEEEEECCCCeEE
Q 004737 676 PSLLVIG-CYETLELWNMTENKTL 698 (732)
Q Consensus 676 ~~L~sgs-~dg~I~IwDl~t~~~~ 698 (732)
+.++++. ..+.+.+.+....+..
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEEEcCCCCEEEEECCCCccee
Confidence 7655554 3445555555544433
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.76 E-value=0.01 Score=63.65 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=128.4
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCC---CCcEEEEEeC---C----C
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 558 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspd---g~~llaSgs~---D----g 558 (732)
-.....++|.|+|++ +++..+|.|+++|.. +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRY-LVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEE-EEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeE-EEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999974 445567999999743 32112211 112346889999997 5556555432 3 5
Q ss_pred cEEEEECCCC--e-----ee-eEEec--cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC------
Q 004737 559 EIRYWSINNG--S-----CA-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 609 (732)
Q Consensus 559 ~I~iWDl~t~--~-----~i-~~~~~--~~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~------ 609 (732)
.|..|+.... . .+ ..+.. ......++|.|++..+++.+. .|.|..+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777877644 1 11 11221 112467999999876665432 246777766532
Q ss_pred ---eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe--CC--eEEEEECCCCCC---------------ceeEEEeecCCCce
Q 004737 610 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 666 (732)
Q Consensus 610 ---~~i~~l~~h~~~V~sla~sp-dg~~Lasgs--Dg--~I~IWDl~t~~~---------------~~~i~~~~~~~~~I 666 (732)
..+.. .++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 11221 2333 346899999 677666544 22 344433 2210 11223331223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-eEE---EEc-cCCCCeeEEEEeCCCCEEEEEE
Q 004737 667 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 667 ~sl~fs-------pdg~~L~sgs~dg~I~IwDl~t~-~~~---~~~-~h~~~V~sla~spdg~~LaSgs 723 (732)
..++|. .++.++++.-..+.|..+++... +.. .+. .....+..+++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 778884 45654444445568888888753 332 222 2246799999999998666654
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.74 E-value=0.006 Score=65.34 Aligned_cols=233 Identities=8% Similarity=0.056 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-eeE----EeecCCcceEEEEEcCC---CCcEEEEEeC-------C
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 557 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-~~~----~l~~h~~~V~sl~fspd---g~~llaSgs~-------D 557 (732)
...+.|+|.|+|++|+++...|.|++++.+.... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3568999999998444556789999998542110 011 11122345789999996 4555555432 2
Q ss_pred CcEEEEECCCC--e--eee-EEec-c------CCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC---
Q 004737 558 SEIRYWSINNG--S--CAG-VFKC-Q------SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--- 609 (732)
Q Consensus 558 g~I~iWDl~t~--~--~i~-~~~~-~------~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~--- 609 (732)
..|..|++... . ... .+.. . .....++|.|++..+++.+. .|.|..+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666776533 1 111 1111 1 12457999999854444332 246777777532
Q ss_pred -----------eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe--CCeEEEEECCCCCC-----------------------
Q 004737 610 -----------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK----------------------- 652 (732)
Q Consensus 610 -----------~~i~~l~~h~~~V~sla~sp-dg~~Lasgs--Dg~I~IWDl~t~~~----------------------- 652 (732)
..+.. .++ .....++|+| ++.++++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 123 3467899999 565555433 22222322222111
Q ss_pred -----ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeEE---EEc-cCCCCeeEEEEeCCC
Q 004737 653 -----GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVN 716 (732)
Q Consensus 653 -----~~~i~~~~~~~~~I~sl~fsp-------dg~~L~sgs~dg~I~IwDl~t~~~~---~~~-~h~~~V~sla~spdg 716 (732)
...+..+.. ......++|.. ++.++++.-..+.|...++..++.. .+. .....+..+++.|||
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 011122222 23466777764 3555554445668888888766544 222 234589999999999
Q ss_pred CEEEEEE-CCCeE
Q 004737 717 GMVASAS-HDKCV 728 (732)
Q Consensus 717 ~~LaSgs-~DG~I 728 (732)
.++++.. .+|.|
T Consensus 335 ~lyv~td~~~g~I 347 (353)
T 2g8s_A 335 YLYVLTDESSGEL 347 (353)
T ss_dssp CEEEEECSTTEEE
T ss_pred cEEEEEeCCCCEE
Confidence 8666543 45554
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.72 E-value=0.068 Score=56.16 Aligned_cols=234 Identities=13% Similarity=0.191 Sum_probs=155.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004737 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 534 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h 534 (732)
+.-.+|..+.||.-. ..++.|||+++...+..+.- ...|..=+|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 455688888887766 67999999999988887764 356777788655 4555553 5589999998766677777766
Q ss_pred C----cceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCCeeEE-EEeCCC----CEEEE-EEc-
Q 004737 535 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRL----GRILA-AAI- 597 (732)
Q Consensus 535 ~----~~V~sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v-~~sp~g----~~ll~-~s~- 597 (732)
. ..|..-..+++.++++++|- -.|.+.+|..+.+. ...++ +...+. .+-.++ ..+++ +..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE--GHAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC--CSEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceee--eeeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777777888888887763 23678889887543 23333 222221 222222 12333 222
Q ss_pred --CCeEEEEECCCC--------eEEEE-EcC---CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737 598 --ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 662 (732)
Q Consensus 598 --dg~I~IwDl~t~--------~~i~~-l~~---h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~ 662 (732)
.+.++|.++... +.... +.. ..+-..++..++.-.+++... -|.|++||+.++ .++..-+..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccC
Confidence 268999998432 11111 111 234556788888877777777 899999999998 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 663 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 777777777666556777778887777666665443
No 312
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.70 E-value=0.12 Score=60.69 Aligned_cols=268 Identities=8% Similarity=0.047 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-cc----CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524 (732)
Q Consensus 450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~----h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~ 524 (732)
...|.++....+|.+.+ |+. +-|..|+..+.+..... .. ....|.++....++..|..|+. +-+..+|..+.
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688998888887655 444 45788888776543221 11 1234888888877776666664 45888887764
Q ss_pred CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--------ccCCeeEEEEeCCCCEEEEEE
Q 004737 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--------~~~~i~~v~~sp~g~~ll~~s 596 (732)
... .........|.++....++...+ |..+ -|.+++..+++...... ....|.++....++. |.+|+
T Consensus 222 ~~~-~~~~l~~~~i~~i~~d~~g~lWi--gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT 296 (758)
T 3ott_A 222 QIK-QTEAFHNNSIKSLALDGNGDLLA--GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGT 296 (758)
T ss_dssp EEE-EEEEEEEEEEEEEEECTTCCEEE--EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEE
T ss_pred eEE-eccCCCCCeEEEEEEcCCCCEEE--EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEe
Confidence 421 11111234588888777764443 3434 58889887655432221 112377777777655 55566
Q ss_pred cCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-------cCCC
Q 004737 597 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN 664 (732)
Q Consensus 597 ~dg~I~IwDl~t~~~i~~l~-----~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-------~~~~ 664 (732)
..| +.++............ .....|.+++...+|.+.+...+ -+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccce-eEEeccCCcCCCCCCC
Confidence 666 5555432211111111 12346899998888887765434 46667655432111 11111 1234
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc--c-----CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~--~-----h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++. |..|+..+-|.++
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEE
Confidence 588888888887 55555 568999999888765432 1 234688888777665 4446654435444
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.68 E-value=0.0037 Score=64.60 Aligned_cols=227 Identities=9% Similarity=0.063 Sum_probs=116.6
Q ss_pred CCCEEEEEE-CC-----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCC--
Q 004737 461 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 525 (732)
Q Consensus 461 dg~~Lasgs-~D-----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~-- 525 (732)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445566665 22 4788999887653321 1111111222222 56677777754 468999988765
Q ss_pred -ceeE-EeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 004737 526 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 596 (732)
Q Consensus 526 -~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s 596 (732)
.... .+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -..++. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3221 11111111222222 3 4666666643 3688999988765543332221 122222 2555666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCC
Q 004737 597 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 597 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
.+ ..+.+||+.+.+-... +....... +++. -++++++.|+ + ..+.+||+.+..- ..+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcc
Confidence 54 4689999988754432 11111111 2222 2556666665 3 3689999987521 1121111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 004737 664 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTL 698 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~ 698 (732)
... +++. -++..++.|+.+ ..|.+||.++.+..
T Consensus 245 ~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 245 CYV-GATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp BSC-EEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred cce-eEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 112 2222 256666666655 36889999887655
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.67 E-value=0.041 Score=58.70 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=131.5
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eEEe----ecCCcceEEEEEcCC---CCcEEEEE--eC
Q 004737 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN 556 (732)
Q Consensus 487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l----~~h~~~V~sl~fspd---g~~llaSg--s~ 556 (732)
.+...-...+.|+|.|||.+|++--..|.|++++...+... +..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33334456789999999997777655899999987654432 1111 223456899999995 33444332 23
Q ss_pred CCcEEEEECCCC----------eeee-EEec--cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC-
Q 004737 557 NSEIRYWSINNG----------SCAG-VFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ- 609 (732)
Q Consensus 557 Dg~I~iWDl~t~----------~~i~-~~~~--~~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~- 609 (732)
++.|.-|.+..+ +.+. .+.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 556666766541 1111 1211 123456999999877666542 356666666532
Q ss_pred --------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCC---------------ceeEEEeecCCC
Q 004737 610 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN 664 (732)
Q Consensus 610 --------~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~---------------~~~i~~~~~~~~ 664 (732)
..+.. .+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11221 2343 356899999988776644 43223333332211 112233332223
Q ss_pred ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE----E-EEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 665 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~----~-~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
....++|.. +. ++.+.. ...|....+..... . .+.+....+.+|+..|||.++++.+
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 456677763 44 444443 44676667655432 1 2233457899999999998766654
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.65 E-value=0.0082 Score=64.26 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=122.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-------ccCCCceEEEEEcCC---CCeEEEEe-C-------C
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 513 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~V~~l~fspd---g~~Lasgs-~-------D 513 (732)
....|+|.|||++|+++...|.|++++.. +.....+ .........|+|+|+ +.+|+.+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46899999999834455667999999853 3322111 112345789999996 45555443 2 2
Q ss_pred CeEEEEecCCCCc---eeE-Eeec------CCcceEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCCe-
Q 004737 514 RTVRVWDTENPDY---SLR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 569 (732)
Q Consensus 514 g~I~IWDl~s~~~---~~~-~l~~------h~~~V~sl~fspdg~~llaSgs~-------------Dg~I~iWDl~t~~- 569 (732)
..|..|++..... ..+ .+.. .......|.|.|+|. |+++.+. .|.|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 3566666653311 011 1111 111246799999984 4444332 2467777765320
Q ss_pred -----------eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCC----eEEEEECC--------C-----------------
Q 004737 570 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T----------------- 608 (732)
Q Consensus 570 -----------~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~--------t----------------- 608 (732)
....+. .......++|++..+.|+++.... .|.+.... .
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 112222 234478899999656777665532 23222100 0
Q ss_pred ----CeEEEEEcCCCCCEEEEEEeC-------CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737 609 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676 (732)
Q Consensus 609 ----~~~i~~l~~h~~~V~sla~sp-------dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~ 676 (732)
..++..+. +...+..++|.. ++.++++.. .+.|...++..+........+......+..+++.|+|.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01112222 223567788864 456665554 77888888875411111111223345789999999998
Q ss_pred EEEE
Q 004737 677 SLLV 680 (732)
Q Consensus 677 ~L~s 680 (732)
.+++
T Consensus 336 lyv~ 339 (353)
T 2g8s_A 336 LYVL 339 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.61 E-value=0.13 Score=56.13 Aligned_cols=235 Identities=12% Similarity=0.176 Sum_probs=156.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004737 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 534 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h 534 (732)
+.-.+|..+.||.-. ..++.|||+++...+..+.-.. .|..=+|-.+ +.|+.. .+..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 456678777777665 6899999999998888776444 5666677544 455555 35689999998766677777766
Q ss_pred C----cceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC----CEEEEEE-c--
Q 004737 535 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL----GRILAAA-I-- 597 (732)
Q Consensus 535 ~----~~V~sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g----~~ll~~s-~-- 597 (732)
. ..|..-..+++.++++++|= -.|.+.+|..+.+. ...++.+.... ..+-.++ ..+++-. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEE-EEEECTTCSSEEEEEEEEECST
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeee-EEEecCCCCCCceEEEEEEecC
Confidence 4 45777777888888887663 24678889887543 22333221111 1122222 1233322 2
Q ss_pred -CCeEEEEECCCC--------eEEEEEc----CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737 598 -ENYISILDVETQ--------VCRLKLQ----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 598 -dg~I~IwDl~t~--------~~i~~l~----~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
.+.++|.++... +....+. ...+-..++..++.-.+++... -|.|++||+.++ .++..-+...
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~ 300 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISG 300 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccC
Confidence 278999998532 1111211 1234556788888877777777 899999999998 7888777777
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 664 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
..|...+.+....-+++....|.|.-..+.+..++
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 78877777776666888888887777766665443
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00018 Score=84.70 Aligned_cols=213 Identities=8% Similarity=0.018 Sum_probs=127.2
Q ss_pred CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEe-ccCCeeEEEEeC
Q 004737 513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRFQP 587 (732)
Q Consensus 513 Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~-~~~~i~~v~~sp 587 (732)
.+.|++.++..... ..+......+..|+|++.+..++++-...+.|+.+++.. ......+. .......+++.+
T Consensus 385 ~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 45788888876542 222222345778999987777776666678999999875 22222221 112356688886
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCCCCceeEEEeecCC
Q 004737 588 RLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 588 ~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+....
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~l 539 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTENI 539 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCCC
Confidence 666666554 467899999886654444433334567889999766555544 3 6788887754321 11 111223
Q ss_pred CceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 664 NKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.....++|++++..|+++.. .+.|+++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 44678999998777777665 4589999997654443322 2234456666543 344444445666654
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.51 E-value=0.019 Score=59.40 Aligned_cols=225 Identities=8% Similarity=0.027 Sum_probs=115.9
Q ss_pred EEEEEEC--CCcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC----CeEEEEecCCCCceeEE-eecC
Q 004737 464 LLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTGH 534 (732)
Q Consensus 464 ~Lasgs~--Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~~~~~~~-l~~h 534 (732)
+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+....... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555554 36789999887653322 1111112222233 56677777754 67889998876532211 1111
Q ss_pred CcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc---------
Q 004737 535 STTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI--------- 597 (732)
Q Consensus 535 ~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~--------- 597 (732)
......+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -.+++. .++..++.|+.
T Consensus 92 r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 92 RDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred ccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 111122222 2 4566677654 4689999988765443222111 122222 24455555553
Q ss_pred CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737 598 ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~ 670 (732)
...+.+||+.+.+-...-... ...-.+++.. ++++++.|+ + ..+.+||+.+..- ..+..+.........+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCCCccceeEEE
Confidence 345899999887543321111 1111122222 556666655 2 3688999887521 11111111111222223
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 004737 671 FHPTFPSLLVIGCY-----ETLELWNMTENKTL 698 (732)
Q Consensus 671 fspdg~~L~sgs~d-----g~I~IwDl~t~~~~ 698 (732)
+ ++..+++|+.+ ..+.+||..+.+..
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 56667777744 47999999988755
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.42 E-value=0.091 Score=56.20 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=116.9
Q ss_pred CeEEEEEcCCCCEEEEE------------ECCCcEEEEEcCC--CeEE-EEecc-----CCCceEEEEEcC--CCC-eEE
Q 004737 452 KVESCHFSPDGKLLATG------------GHDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA 508 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasg------------s~Dg~I~VWd~~t--~~~~-~~l~~-----h~~~V~~l~fsp--dg~-~La 508 (732)
....+++.++|..++++ ..+|.|.++|..+ .+.. ..+.+ ..-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566778887554444 1689999999873 2221 12222 223566777755 454 454
Q ss_pred EEe-C--CCeEEEEecCCCCceeE---EeecC-CcceEEEEEcCCCCcEEEEEe-----------------CCCcEEEEE
Q 004737 509 TSS-A--DRTVRVWDTENPDYSLR---TFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS 564 (732)
Q Consensus 509 sgs-~--Dg~I~IWDl~s~~~~~~---~l~~h-~~~V~sl~fspdg~~llaSgs-----------------~Dg~I~iWD 564 (732)
++. . +.+|.+|+++....... .+.+. -...+.+.+.++|. ++++.. ..|.|+.+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 442 2 56888988876433222 23322 23578999999874 444543 124555555
Q ss_pred CCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEeC-CCCEEEEEe-
Q 004737 565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS- 638 (732)
Q Consensus 565 l~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t-~~--~i~~l~~h~~~V~sla~sp-dg~~Lasgs- 638 (732)
. +++......-...+.++|+|+++.++++.. .+.|..||+.. +. ....+ ...+....+++++ +|.+.+++.
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 5 343333444456788999999999888875 68999999863 32 22233 2346678899999 599888776
Q ss_pred CC-eEEEEECC
Q 004737 639 DE-LVRVWSIG 648 (732)
Q Consensus 639 Dg-~I~IWDl~ 648 (732)
++ .|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 53 55555554
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.40 E-value=0.097 Score=55.78 Aligned_cols=235 Identities=9% Similarity=0.057 Sum_probs=124.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEe----ccCCCceEEEEEcCC---CCeEEEE-e--C
Q 004737 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S--A 512 (732)
Q Consensus 445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l----~~h~~~V~~l~fspd---g~~Lasg-s--~ 512 (732)
.+-..-...+.|+|.|||+++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33344455789999999997777655899999987665542 222 123456899999995 3444443 2 3
Q ss_pred CCeEEEEecCCCC---------ce-eEEee-cCCcceEEEEEcCCCCcEEEEEe------------CCCcEEEEECCCCe
Q 004737 513 DRTVRVWDTENPD---------YS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNGS 569 (732)
Q Consensus 513 Dg~I~IWDl~s~~---------~~-~~~l~-~h~~~V~sl~fspdg~~llaSgs------------~Dg~I~iWDl~t~~ 569 (732)
+..|.-|.+.... .. +..+. ........|.|.|+|..++.+|+ ..|.|.-++....-
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 4556666655411 11 11121 11123467999999854443332 13555555554220
Q ss_pred -------eeeEEe-ccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCe------------------EEEEEcCCCCC
Q 004737 570 -------CAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQV------------------CRLKLQGHKNQ 621 (732)
Q Consensus 570 -------~i~~~~-~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~------------------~i~~l~~h~~~ 621 (732)
....+. .......++|+|++. |+++.. ++.-.|.-+..+. ++..+..+...
T Consensus 186 p~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp CTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred cCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 011222 234467899999754 444443 2212222222111 12222222235
Q ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737 622 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 622 V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sg 681 (732)
...++|. ++.++...- ...|....+..... .+....+......+..+++.|||..+++.
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 5677776 355555444 55666666654321 11222333344678889999998654443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.38 E-value=0.014 Score=60.32 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=114.3
Q ss_pred CCEEEEEECC----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCCceeEE
Q 004737 462 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 530 (732)
Q Consensus 462 g~~Lasgs~D----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~~~~~~ 530 (732)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555533 4688889887653322 1111111122222 56677777654 35888998875532211
Q ss_pred -eecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc-----
Q 004737 531 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI----- 597 (732)
Q Consensus 531 -l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~----- 597 (732)
+.........+.+ + +.+++.|+.++ .+.+||+.+.+....-..... ...++. .++..+++|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111122222 3 45666666443 578899887765443222211 122222 24455555554
Q ss_pred --CCeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceE
Q 004737 598 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 667 (732)
Q Consensus 598 --dg~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~ 667 (732)
...+.+||+.+.+-... +...... .+++.. ++++++.|+ + ..+.+||+.+..- ..+..+..... -.
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~-~~ 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRR-NA 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCB-SC
T ss_pred ccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccc-cC
Confidence 24589999988754432 2111111 122222 566666665 3 2689999887521 11211111111 11
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEE
Q 004737 668 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 700 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~ 700 (732)
.++. -++..+++|+.++ .|.+||..+.+...+
T Consensus 246 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2222 2566667776553 589999998876644
No 322
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.23 E-value=0.014 Score=60.16 Aligned_cols=213 Identities=11% Similarity=0.090 Sum_probs=105.3
Q ss_pred CCCeEEEEe-CC-----CeEEEEecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCe-
Q 004737 503 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 569 (732)
Q Consensus 503 dg~~Lasgs-~D-----g~I~IWDl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~- 569 (732)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888888765432111 1111111122222 2 4666677654 469999998766
Q ss_pred --eeeEEeccCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737 570 --CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 570 --~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs 638 (732)
....-..... -..++.. ++..++.|+.+ ..+.+||+.+.+-.. .+...... .+++.. ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA-SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE-TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE-CCEEEEECC
Confidence 3332221111 1222222 44556666543 468999998875433 22211111 122222 566666655
Q ss_pred -C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCC-CC
Q 004737 639 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-KL 706 (732)
Q Consensus 639 -D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~-~~ 706 (732)
+ ..+.+||+.+..- ..+..+..... -.+++. -++..+++|+.+ ..|.+||+.+.+...+.... ..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRS-GAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEE-EEECCCSSCCB-SCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcE-EeCCCCCcccc-cceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 3688999887521 11111111111 122222 255666666654 47999999988776443211 11
Q ss_pred -eeEEEEeCCCCEEEEEECC
Q 004737 707 -VSSLAASTVNGMVASASHD 725 (732)
Q Consensus 707 -V~sla~spdg~~LaSgs~D 725 (732)
-.+++ .-++++++.|+.+
T Consensus 245 ~~~~~~-~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 245 CYVGAT-VLRGRLYAIAGYD 263 (301)
T ss_dssp BSCEEE-EETTEEEEECCBC
T ss_pred cceeEE-EECCEEEEEcCcC
Confidence 11222 2366777777765
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.18 E-value=0.038 Score=57.45 Aligned_cols=226 Identities=8% Similarity=-0.015 Sum_probs=114.0
Q ss_pred EEEEEECCCcEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeC----C-------CeEEEEecCCCCceeEEe
Q 004737 464 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----D-------RTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~----D-------g~I~IWDl~s~~~~~~~l 531 (732)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. + ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344454 579999998876432 22212122333334457788888873 1 1377888877543 222
Q ss_pred ecCCcc--eEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc--
Q 004737 532 TGHSTT--VMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-- 597 (732)
Q Consensus 532 ~~h~~~--V~sl~fspdg~~llaSgs~D--------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~-- 597 (732)
..-..+ -.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-....+ -.+++. .++..++.|+.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence 111111 1122222 34666666632 4589999988764432221111 122222 34456666665
Q ss_pred ----CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCce
Q 004737 598 ----ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKF 666 (732)
Q Consensus 598 ----dg~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~~~~~I 666 (732)
-..+.+||+.+.+-...-... ...-.+++.. ++++++.|+ ++ .+.+||+.+.. ...+..+..... -
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~ 236 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERS-S 236 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCB-S
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCccc-c
Confidence 246999999887543321111 1111122222 566666665 43 58889987752 111211111111 1
Q ss_pred EEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEE
Q 004737 667 HSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 700 (732)
Q Consensus 667 ~sl~fspdg~~L~sgs~d--------------g~I~IwDl~t~~~~~~ 700 (732)
.+++.. ++..+++|+.+ ..|.+||+.+.+...+
T Consensus 237 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 237 LSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp CEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 222222 55666666653 2478899988876544
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.17 E-value=0.049 Score=60.99 Aligned_cols=259 Identities=11% Similarity=0.071 Sum_probs=150.5
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEeccC-------------------------CCce--EEEEEc---CCCCeEEEEeC-C
Q 004737 465 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWI--TDVRFS---PSLSRLATSSA-D 513 (732)
Q Consensus 465 Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------------------------~~~V--~~l~fs---pdg~~Lasgs~-D 513 (732)
+.+|+..|.|+|+-+.+++.+..+... .+.. ..+.+. .||+||+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 677888999999999999888776311 0111 122332 15677777653 5
Q ss_pred CeEEEEecCCCCceeEEeecCCcceEEEEEc--CCCCcEEEEEe------CCCcE------------EEEECCCCeeeeE
Q 004737 514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 573 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs--pdg~~llaSgs------~Dg~I------------~iWDl~t~~~i~~ 573 (732)
..|-..+++..++....-......+..+.|- |+..++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777777776553222233345567777775 56555554431 22221 1124444444444
Q ss_pred EeccCCeeEEEEeCCCCEEEEEEcCC---------------eEEEEECCC-------C-----e--EEEEEcC-------
Q 004737 574 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q-----V--CRLKLQG------- 617 (732)
Q Consensus 574 ~~~~~~i~~v~~sp~g~~ll~~s~dg---------------~I~IwDl~t-------~-----~--~i~~l~~------- 617 (732)
+...+....+...+++++.++.+.+. .+.++++.. + . -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 44445555566778888887777532 356665420 0 0 0111211
Q ss_pred --------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 618 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 618 --------h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~---------~~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
-......+.++|||+|+++++ +.++.|+|++.. ....++..-...+-.....+|.++|...
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceE
Confidence 112345688999999999988 889999999742 1112233333345667888999999544
Q ss_pred EEEEcCCeEEEEECCCC----------eEE-EEccCCCCeeEEE-----EeCCCCEEEEEE
Q 004737 679 LVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSLA-----ASTVNGMVASAS 723 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~----------~~~-~~~~h~~~V~sla-----~spdg~~LaSgs 723 (732)
.+.--|..|..|++... ..+ ++..|-.+-.-.+ -.+||++|++..
T Consensus 393 TtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 44447889999998642 233 4445544322221 246788888775
No 325
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.033 Score=57.52 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=106.2
Q ss_pred CeEEEEeC--CCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEEecc
Q 004737 505 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 577 (732)
Q Consensus 505 ~~Lasgs~--Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~D----g~I~iWDl~t~~~i~~~~~~ 577 (732)
.+++.|+. ...+.+||..+...... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555554 35788899887553211 11111111222222 24566677654 57889999887654433322
Q ss_pred CC--eeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe-C--------
Q 004737 578 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D-------- 639 (732)
Q Consensus 578 ~~--i~~v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs-D-------- 639 (732)
.. -..++. -++..+++|+.+ ..+.+||..+.+-...-..... .-.+++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 21 122222 255566666654 4699999988754332111111 1112222 2556655554 2
Q ss_pred -CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCC---CCeeEE
Q 004737 640 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSL 710 (732)
Q Consensus 640 -g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~---~~V~sl 710 (732)
..+.+||+.+..- ..+..+... ..-.+++.. +++.+++|+.+ ..+.+||+.+.+...+.... ....++
T Consensus 168 ~~~~~~yd~~~~~W-~~~~~~p~~-r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 168 LNSCEVYDPATETW-TELCPMIEA-RKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CCCEEEEETTTTEE-EEECCCSSC-CBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred cceEEEeCCCCCeE-EECCCccch-hhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 3488999887521 111111111 111222222 55666666543 36899999988766443211 112222
Q ss_pred EEeCCCCEEEEEECC
Q 004737 711 AASTVNGMVASASHD 725 (732)
Q Consensus 711 a~spdg~~LaSgs~D 725 (732)
.+ ++.+++.|+.+
T Consensus 245 ~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 245 AV--GSIVYVLAGFQ 257 (306)
T ss_dssp EE--TTEEEEEECBC
T ss_pred EE--CCEEEEEeCcC
Confidence 22 67777788754
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.13 E-value=0.026 Score=58.23 Aligned_cols=202 Identities=10% Similarity=0.059 Sum_probs=100.8
Q ss_pred CeEEEEecCCCCceeEEeecCCc--ceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEE
Q 004737 514 RTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMR 584 (732)
Q Consensus 514 g~I~IWDl~s~~~~~~~l~~h~~--~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~ 584 (732)
..+.+||+.+... ..+..... .-.+++.. ++.+++.|+.+ ..+.+||..+.+....-..... -.+++
T Consensus 30 ~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred CcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE
Confidence 3577888876543 22211111 11122222 34666677644 3588999987765443322211 12222
Q ss_pred EeCCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-------CeEEEEECCC
Q 004737 585 FQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-------ELVRVWSIGS 649 (732)
Q Consensus 585 ~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-------g~I~IWDl~t 649 (732)
. .++..+++|+.++ .+.+||+.+.+-... +...... .+++.. ++++++.|+ + ..+.+||+.+
T Consensus 106 ~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~ 182 (302)
T 2xn4_A 106 V-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATT 182 (302)
T ss_dssp E-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred E-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence 2 2456666777653 588999988754332 1111111 122222 555555554 2 2588999877
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC--CeeEEEEeCCCCEEEEE
Q 004737 650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASA 722 (732)
Q Consensus 650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~~--~V~sla~spdg~~LaSg 722 (732)
..- ..+..+..... -.+++. -++..+++|+.+ ..+.+||..+.+...+..... .-.+++. .++.+++.|
T Consensus 183 ~~W-~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~G 258 (302)
T 2xn4_A 183 NEW-TYIAEMSTRRS-GAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVG 258 (302)
T ss_dssp TEE-EEECCCSSCCB-SCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEC
T ss_pred CcE-EECCCCccccc-cccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEEC
Confidence 521 11111111111 122222 256666666654 379999999887664432211 1112222 366777777
Q ss_pred ECCC
Q 004737 723 SHDK 726 (732)
Q Consensus 723 s~DG 726 (732)
+.++
T Consensus 259 G~~~ 262 (302)
T 2xn4_A 259 GDDG 262 (302)
T ss_dssp CBCS
T ss_pred CcCC
Confidence 7654
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.09 E-value=0.2 Score=55.38 Aligned_cols=156 Identities=12% Similarity=0.162 Sum_probs=88.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eEEeec------CCcceEEEEEcCC---CCcEEEEEeC-----
Q 004737 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN----- 556 (732)
Q Consensus 492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~------h~~~V~sl~fspd---g~~llaSgs~----- 556 (732)
-...+.++|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345789999999987776544457888876544422 112211 2355779999995 5555555432
Q ss_pred -------CCcEEEEECCCC--ee---eeEE---ec--cCCeeEEEEeCCCCEEEEEEcC---------------------
Q 004737 557 -------NSEIRYWSINNG--SC---AGVF---KC--QSGATQMRFQPRLGRILAAAIE--------------------- 598 (732)
Q Consensus 557 -------Dg~I~iWDl~t~--~~---i~~~---~~--~~~i~~v~~sp~g~~ll~~s~d--------------------- 598 (732)
...|..|++... .. ...+ .. ......++|.|++..+++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 235666665322 11 1111 11 1236889999999877765532
Q ss_pred -----------CeEEEEECCCCe----------EEEEE-cCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 004737 599 -----------NYISILDVETQV----------CRLKL-QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 648 (732)
Q Consensus 599 -----------g~I~IwDl~t~~----------~i~~l-~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~ 648 (732)
|.|.-++....- ....+ .+| .....++|+++|.++++-. ++.-.|.-+.
T Consensus 186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 445555554320 11111 233 3567899999888776654 4444444443
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.09 E-value=0.02 Score=59.53 Aligned_cols=230 Identities=8% Similarity=0.030 Sum_probs=115.5
Q ss_pred CCCCEEEEEECC----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeC----C-----CeEEEEecCCC
Q 004737 460 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 524 (732)
Q Consensus 460 pdg~~Lasgs~D----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~----D-----g~I~IWDl~s~ 524 (732)
-++.+++.|+.+ ..+.+||..+.+-... +.........+.+ ++.+++.|+. + ..+.+||..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356666776632 4688999887653322 1111111122222 5667777665 2 35888898875
Q ss_pred CceeEE-eecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 004737 525 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 596 (732)
Q Consensus 525 ~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s 596 (732)
...... +.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -.+++.. ++..++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 432111 1111111222222 3 4566666533 4688999987764433222111 1122222 445566666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCC
Q 004737 597 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 663 (732)
Q Consensus 597 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~ 663 (732)
.+ ..+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+..- ..+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCc
Confidence 54 4689999988754322 11111111 22222 566666665 3 4689999887521 1111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEE
Q 004737 664 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 700 (732)
Q Consensus 664 ~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~ 700 (732)
. -.+++.. +++.++.|+.+ ..|.+||+.+.+...+
T Consensus 254 ~-~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 S-ALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp B-SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred c-ceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 1 1222222 56666666644 3688999988776543
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.04 E-value=0.16 Score=53.01 Aligned_cols=234 Identities=5% Similarity=-0.072 Sum_probs=132.6
Q ss_pred cCCCCEEEEEE--CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC--------------CeEEEEecC
Q 004737 459 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE 522 (732)
Q Consensus 459 Spdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--------------g~I~IWDl~ 522 (732)
+.++.+|+... .++.|...+.+... ...+... .+--|++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34667766654 24566666655433 3333221 123457788888877543 367777777
Q ss_pred CCCceeEEeecCCcceEEEEEcCCCCcEEEEE---eCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-C
Q 004737 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E 598 (732)
Q Consensus 523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSg---s~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-d 598 (732)
.... ..+... . +..|+++++.++++- ..+..|+..++........... .+ ..++++++.|+..+. .
T Consensus 97 g~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTT
T ss_pred CCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCC
Confidence 6542 223221 1 236677777777665 3455677777764443333322 22 456778888887766 5
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 675 (732)
Q Consensus 599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg-~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg 675 (732)
..|++.++..+.....+.+ ... ..+.|++.+|+-.. ++ .|..-++..... . .+. ...+ ..|+|++
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~---~Lt--~~~~--~~~~~~g 234 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-V---VLT--EANI--EHYNVYG 234 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-E---ECS--CSCE--EEEEEET
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-E---EEe--CCCc--ceEEECC
Confidence 7899999987765544432 222 34669999888776 32 676667665432 1 121 2223 3488888
Q ss_pred CEEEEEEc--CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 676 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 676 ~~L~sgs~--dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
.+|+.+.. .+.|+.-++.......+... .+..+ ++.+.+|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence 88877643 34777778776543333221 23333 34455555444
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.98 E-value=0.11 Score=53.95 Aligned_cols=219 Identities=8% Similarity=-0.005 Sum_probs=108.1
Q ss_pred cEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeC----CC-------eEEEEecCCCCceeEEeecCC--cce
Q 004737 473 KAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTFTGHS--TTV 538 (732)
Q Consensus 473 ~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~----Dg-------~I~IWDl~s~~~~~~~l~~h~--~~V 538 (732)
.+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+... ..+.... ..-
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EECCCCCccccc
Confidence 47889988776443 12211122222333456778888873 12 277788876543 2221111 111
Q ss_pred EEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc------CCeEEE
Q 004737 539 MSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI------ENYISI 603 (732)
Q Consensus 539 ~sl~fspdg~~llaSgs~D-------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~------dg~I~I 603 (732)
.+++.. + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+. ...+.+
T Consensus 103 ~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 103 FGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp CEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEE
T ss_pred cceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEE
Confidence 122222 3 4566666643 3588899987765443222221 112222 34455566653 246999
Q ss_pred EECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737 604 LDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676 (732)
Q Consensus 604 wDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~ 676 (732)
||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+..- ..+..+..... -.+++. -++.
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~-~~~~~~-~~~~ 255 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERS-SISLVS-LAGS 255 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCB-SCEEEE-ETTE
T ss_pred EcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCccc-ceEEEE-ECCE
Confidence 99998754332111 11111222332 556666655 2 2577899877521 12211111111 112222 3456
Q ss_pred EEEEEEcC--------------CeEEEEECCCCeEEEE
Q 004737 677 SLLVIGCY--------------ETLELWNMTENKTLTL 700 (732)
Q Consensus 677 ~L~sgs~d--------------g~I~IwDl~t~~~~~~ 700 (732)
.+++|+.+ ..+.+||+.+.+...+
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 66666543 3688999988876644
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.89 E-value=0.18 Score=52.63 Aligned_cols=177 Identities=8% Similarity=0.034 Sum_probs=108.4
Q ss_pred EEEEcCCCCEEEEEECC--------------CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe--C--CCeE
Q 004737 455 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV 516 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~D--------------g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs--~--Dg~I 516 (732)
+--|+++|++|+.+... ..|+..+++..+... +.... +..|++++++|+... . +..|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567888888776543 367777777665333 22111 236777888888776 3 3455
Q ss_pred EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE
Q 004737 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 596 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s 596 (732)
...+++... .+.+..+.. ..|+++++.++.+......|.+.++..+.....+. +.. ...+.|++++|+...
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~ 202 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMD 202 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEE
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEE
Confidence 555665433 344444432 34567788888776656789999988766554433 333 234668999998877
Q ss_pred cC--CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCC
Q 004737 597 IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 650 (732)
Q Consensus 597 ~d--g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~ 650 (732)
.+ ..|..-++..... ..+. ...+ ..|+|++..|+.+. .+.|..-++...
T Consensus 203 ~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 203 VNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 64 3677777776543 2332 2233 34778888887764 346777776553
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.76 E-value=0.087 Score=57.30 Aligned_cols=132 Identities=18% Similarity=0.204 Sum_probs=89.8
Q ss_pred CCeEEEEECCCCeEEEEEcCC----CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCc---------eeEEEeec---
Q 004737 598 ENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------ECIHELSC--- 661 (732)
Q Consensus 598 dg~I~IwDl~t~~~i~~l~~h----~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~---------~~i~~~~~--- 661 (732)
++.|+.-++......+.+... ...|..+..+|+|.+|+..++..|.|..+..+... ...+.+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 366666666533223333322 23678899999999999999999999999843210 11222222
Q ss_pred ---CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--EE---------EEccCCCCeeEEEEeCCCCEEEEEE-
Q 004737 662 ---TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAASTVNGMVASAS- 723 (732)
Q Consensus 662 ---~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~--~~---------~~~~h~~~V~sla~spdg~~LaSgs- 723 (732)
...+|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..++-.|+..+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 24679999999964 679999999999999997521 11 1123346789999999877666655
Q ss_pred -CCCeEE
Q 004737 724 -HDKCVK 729 (732)
Q Consensus 724 -~DG~I~ 729 (732)
..|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 778775
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.74 E-value=0.9 Score=50.10 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEecc------CCCceEEEEEcCC---CCeEEEEeC-------
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------- 512 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~------h~~~V~~l~fspd---g~~Lasgs~------- 512 (732)
...++|+|.|||+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +.+|+.+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999987776544357888886655433 23321 2356779999995 555554432
Q ss_pred ------CCeEEEEecCCCCc-------eeEEee-cCCcceEEEEEcCCCCcEEEEEe
Q 004737 513 ------DRTVRVWDTENPDY-------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 555 (732)
Q Consensus 513 ------Dg~I~IWDl~s~~~-------~~~~l~-~h~~~V~sl~fspdg~~llaSgs 555 (732)
...|.-|++..... .+..+. ........|+|.|+|..++.+++
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 13455555543211 111121 11234689999999865555443
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.71 E-value=0.03 Score=59.30 Aligned_cols=230 Identities=8% Similarity=-0.048 Sum_probs=112.8
Q ss_pred CCCEEEEEEC-CCcEEEEEcCC-CeEEEEe---c-cCCCceEEEEEcCCCCeEEEEeC-C---------CeEEEEecCCC
Q 004737 461 DGKLLATGGH-DKKAVLWCTES-FTVKSTL---E-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 524 (732)
Q Consensus 461 dg~~Lasgs~-Dg~I~VWd~~t-~~~~~~l---~-~h~~~V~~l~fspdg~~Lasgs~-D---------g~I~IWDl~s~ 524 (732)
++++++.|+. ...+.+||..+ ......+ . .......++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6666666664 35788899864 1222222 2 11112222333 5667777765 2 46888998875
Q ss_pred CceeEEeec-CC-cceEEEEEcCCCCcEEEEEeCC---------------------------------------CcEEEE
Q 004737 525 DYSLRTFTG-HS-TTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYW 563 (732)
Q Consensus 525 ~~~~~~l~~-h~-~~V~sl~fspdg~~llaSgs~D---------------------------------------g~I~iW 563 (732)
......... .. ....++. .+ ..+++.|+.+ ..+.+|
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred cEEECCCCCCcccccceEEE--EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 532211111 11 1112222 23 4666677644 579999
Q ss_pred ECCCCeeeeEEeccC--Ce-eEEEEeCCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EEcCCCCCEEEEEEeCC
Q 004737 564 SINNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTS 630 (732)
Q Consensus 564 Dl~t~~~i~~~~~~~--~i-~~v~~sp~g~~ll~~s~------dg~I~IwDl--~t~~~i~--~l~~h~~~V~sla~spd 630 (732)
|+.+.+....-.... .. .+++.. ++..+++|+. ...+.+||+ .+.+-.. .+..........+...+
T Consensus 174 d~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp ETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred eCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence 998876554433221 12 233333 4455555543 346788887 4443222 11111111111122235
Q ss_pred CCEEEEEe-C----------------------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--
Q 004737 631 GEYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-- 685 (732)
Q Consensus 631 g~~Lasgs-D----------------------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-- 685 (732)
+++++.|+ + ..+.+||+.+..- ..+..+...... ..++.-+++.+++|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-DKSGELSQGRAY--GVSLPWNNSLLIIGGETAGG 329 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C-EEEEECSSCCBS--SEEEEETTEEEEEEEECGGG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce-eeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCC
Confidence 56666554 2 2578899886532 333333322222 222334677778888653
Q ss_pred ----eEEEEECCCCeEEE
Q 004737 686 ----TLELWNMTENKTLT 699 (732)
Q Consensus 686 ----~I~IwDl~t~~~~~ 699 (732)
.|.++++++++.+.
T Consensus 330 ~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 330 KAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CEEEEEEEEEC-CCSCEE
T ss_pred CEeeeEEEEEEcCcEeEe
Confidence 57777998888773
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.70 E-value=0.17 Score=52.36 Aligned_cols=209 Identities=10% Similarity=0.023 Sum_probs=103.4
Q ss_pred EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-----C------CcEEEEECCCCeeeeEEe
Q 004737 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVFK 575 (732)
Q Consensus 507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-----D------g~I~iWDl~t~~~i~~~~ 575 (732)
++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||..+.+....-.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 44454 579999998876543222211112222222334 455556652 1 127889998876543222
Q ss_pred ccCC--eeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe--C--
Q 004737 576 CQSG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D-- 639 (732)
Q Consensus 576 ~~~~--i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs--D-- 639 (732)
...+ -..++.. ++..++.|+.+ ..+.+||..+.+-... +...... .+++. -++++++.|+ +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTS
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCC
Confidence 2111 1122222 44555566532 4689999988753321 1111111 12222 3555555554 2
Q ss_pred ---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccCC--CCeeE
Q 004737 640 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD--KLVSS 709 (732)
Q Consensus 640 ---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~~~h~--~~V~s 709 (732)
..+.+||+.+..- ..+..+..... -.+++. -+++.+++|+.++ .+.+||..+.+...+.... ..-.+
T Consensus 162 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEW-KELAPMQTARS-LFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp CBCCCEEEEETTTTEE-EECCCCSSCCB-SCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred cccceEEEEeCCCCeE-EECCCCCCchh-ceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 3689999887521 11111111111 122222 2566677777654 6899999988766543211 11122
Q ss_pred EEEeCCCCEEEEEECC
Q 004737 710 LAASTVNGMVASASHD 725 (732)
Q Consensus 710 la~spdg~~LaSgs~D 725 (732)
++. -++++++.|+.+
T Consensus 239 ~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEE-ETTEEEEEEEEE
T ss_pred EEE-ECCEEEEECCcc
Confidence 222 356777777764
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.61 E-value=0.093 Score=64.90 Aligned_cols=218 Identities=10% Similarity=0.168 Sum_probs=131.9
Q ss_pred CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcE
Q 004737 471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 550 (732)
Q Consensus 471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~l 550 (732)
...|.|.|+.....+.+-.- ..-+.-.+|..+.||.=. ..++.|+|+++..+ ++.+.- ..+|..-.|-... .+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~-~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV 119 (1630)
T ss_pred CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCC-ee
Confidence 34788889887654422110 112234577777666654 77999999997553 444442 3467777777553 33
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----cCCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004737 551 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 617 (732)
Q Consensus 551 laSgs~Dg~I~iWDl~t-~~~i~~~~~-----~~~i~~v~~sp~g~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~ 617 (732)
.+++ +..|+.|++.. ..+.+.+.. ...|..-..+++.++++..+- .|.+.+|.++.+. -..+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 3233 56799999964 334444432 244777788888888776553 4788889887543 233455
Q ss_pred CCCCEEEEEEeC---CCCEEEEEe----CCeEEEEECCCCC-C----cee-EEE-ee--cCCCceEEEEEeCCCCEEEEE
Q 004737 618 HKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSGS-K----GEC-IHE-LS--CTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 618 h~~~V~sla~sp---dg~~Lasgs----Dg~I~IWDl~t~~-~----~~~-i~~-~~--~~~~~I~sl~fspdg~~L~sg 681 (732)
|......+.... ...+++.+. .++++|.++.... . .+. +.. +. ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 554443333321 122333333 2689999986530 0 011 111 11 112334567888888899999
Q ss_pred EcCCeEEEEECCCCeEE
Q 004737 682 GCYETLELWNMTENKTL 698 (732)
Q Consensus 682 s~dg~I~IwDl~t~~~~ 698 (732)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999877
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.47 E-value=0.23 Score=51.43 Aligned_cols=203 Identities=11% Similarity=0.053 Sum_probs=98.9
Q ss_pred eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC----CC-------cEEEEECCCCeeeeEEeccCC--ee
Q 004737 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQSG--AT 581 (732)
Q Consensus 515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~----Dg-------~I~iWDl~t~~~i~~~~~~~~--i~ 581 (732)
.+.+||..+......................+ +.+++.|+. ++ .+.+||..+.+....-..... -.
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 47889988766433222211111122222333 456666662 11 277889887765433222111 12
Q ss_pred EEEEeCCCCEEEEEEcC-------CeEEEEECCCCeEEEEEcCCCCCE--EEEEEeCCCCEEEEEe--C-----CeEEEE
Q 004737 582 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW 645 (732)
Q Consensus 582 ~v~~sp~g~~ll~~s~d-------g~I~IwDl~t~~~i~~l~~h~~~V--~sla~spdg~~Lasgs--D-----g~I~IW 645 (732)
+++.. ++..+++|+.+ ..+.+||..+.+-...-. ...+. .+++. .++++++.|+ + ..+.+|
T Consensus 104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 22222 45666677653 358899998875443211 11111 12222 3566666554 2 258999
Q ss_pred ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC--CeeEEEEeCCCCE
Q 004737 646 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--LVSSLAASTVNGM 718 (732)
Q Consensus 646 Dl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~~--~V~sla~spdg~~ 718 (732)
|+.+..- ..+..+..... ..+++.. ++..+++|+.+ ..+.+||+.+.+...+..... .-.+++ ..++++
T Consensus 181 d~~~~~W-~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i 256 (318)
T 2woz_A 181 NPKKGDW-KDLAPMKTPRS-MFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL 256 (318)
T ss_dssp ETTTTEE-EEECCCSSCCB-SCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred cCCCCEE-EECCCCCCCcc-cceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence 9887521 11111111111 1222332 55666666643 268899999887664432111 111222 235667
Q ss_pred EEEEECC
Q 004737 719 VASASHD 725 (732)
Q Consensus 719 LaSgs~D 725 (732)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7777654
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.048 Score=57.93 Aligned_cols=192 Identities=6% Similarity=-0.023 Sum_probs=102.8
Q ss_pred CeEEEEeCCCeEEEEecCCCCceeEEeecC-CcceEEEEE--cCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEeccCCe
Q 004737 505 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 580 (732)
Q Consensus 505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~f--spdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~~~~~i 580 (732)
.+++.++.||.|.-+|..+++. .-.+... ..++....- .+.+..+++.. ..||.|..+|..+|.....+.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4688899999999999988774 3333322 122222110 01122444343 57999999999888665554432211
Q ss_pred e--EEEEe-----------CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--CC-----EEEEEEe-----CCCCEEE
Q 004737 581 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 635 (732)
Q Consensus 581 ~--~v~~s-----------p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--~~-----V~sla~s-----pdg~~La 635 (732)
. -+... ..++.+++++.+|.+...|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 01111 145788999999999999999999999886421 11 1111111 1134555
Q ss_pred EEe-CCeEEEEECCCCCCce-eEEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737 636 SVS-DELVRVWSIGSGSKGE-CIHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 699 (732)
Q Consensus 636 sgs-Dg~I~IWDl~t~~~~~-~i~~~~~~~~~--I-~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~ 699 (732)
.+. +..+.+.+ +++.... .+......... + ..-.++.++.+ ++++.|+.|+.+|..+++.+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 66666666 3332111 01111111000 0 00001123554 557788888888887777653
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.34 E-value=0.14 Score=53.04 Aligned_cols=213 Identities=7% Similarity=-0.031 Sum_probs=104.2
Q ss_pred CCCeEEEEeCC----CeEEEEecCCCCceeEEeecCC--cceEEEEEcCCCCcEEEEEeC----C-----CcEEEEECCC
Q 004737 503 SLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINN 567 (732)
Q Consensus 503 dg~~Lasgs~D----g~I~IWDl~s~~~~~~~l~~h~--~~V~sl~fspdg~~llaSgs~----D-----g~I~iWDl~t 567 (732)
++.+++.|+.+ ..+.+||..+... ..+.... ..-.+++.. + +.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 44555555532 3578888876543 2221111 111122222 2 456666664 2 4688999987
Q ss_pred CeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe
Q 004737 568 GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 568 ~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs 638 (732)
.+....-..... -..++.. ++..+++|+.+ ..+.+||+.+.+-... +......- +++.. ++++++.|+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAVGG 176 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECC
T ss_pred CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-CCEEEEEeC
Confidence 764433221111 1222222 44555565533 4689999988754332 11111111 22222 566666655
Q ss_pred -C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC--
Q 004737 639 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-- 705 (732)
Q Consensus 639 -D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~~-- 705 (732)
+ ..+.+||+.+..- ..+..+..... ..+++.. ++..+++|+.+ ..+.+||+.+.+...+.....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEW-RMITAMNTIRS-GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEE-EECCCCSSCCB-SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeE-eeCCCCCCccc-cceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 3 3688999876521 11111111111 1222222 56666666654 479999999887664432111
Q ss_pred CeeEEEEeCCCCEEEEEECCC
Q 004737 706 LVSSLAASTVNGMVASASHDK 726 (732)
Q Consensus 706 ~V~sla~spdg~~LaSgs~DG 726 (732)
.-.+++. -++++++.|+.++
T Consensus 254 ~~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 254 SALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp BSCEEEE-ETTEEEEECCBCS
T ss_pred cceEEEE-ECCEEEEEcCcCC
Confidence 1122222 2567777777543
No 340
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.24 Score=52.59 Aligned_cols=187 Identities=9% Similarity=0.019 Sum_probs=102.0
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEeccC-CCceEEEEEc--C-CCCeEEEE-eCCCeEEEEecCCCCceeEEeec---C
Q 004737 463 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H 534 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fs--p-dg~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~---h 534 (732)
.++++++.||.|.-+|.++|+..-.+... ..++....-. + ++..++.. +.||.|..++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888654 1222221100 1 22333333 57999999998876432211110 1
Q ss_pred CcceEE---EEE-cC---CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe--------eEEEEe-----CCCCEEEE
Q 004737 535 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA 594 (732)
Q Consensus 535 ~~~V~s---l~f-sp---dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i--------~~v~~s-----p~g~~ll~ 594 (732)
..++.. ..+ .+ .....+++++.+|.+...|+.+|+.+..+...... .|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 112221 000 00 02356678999999999999999999988754321 111111 12356777
Q ss_pred EEcCCeEEEEECCCCeEEEEE-----cCCCCC--E-EEEEEeCCCCEEEEEeCCeEEEEECCCCC
Q 004737 595 AAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS 651 (732)
Q Consensus 595 ~s~dg~I~IwDl~t~~~i~~l-----~~h~~~--V-~sla~spdg~~LasgsDg~I~IWDl~t~~ 651 (732)
+..+..+.+.+ ++++ +..+ ...... + ..-..+.|+.++++..||.|.-+|..++.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence 77777777776 4443 2111 110000 0 00000124566554448888888877663
No 341
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.22 E-value=0.35 Score=52.59 Aligned_cols=143 Identities=10% Similarity=0.108 Sum_probs=93.1
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------
Q 004737 544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 610 (732)
Q Consensus 544 spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~-------- 610 (732)
+.++..+++.- ++.||.-++......+.++.. ..+..+..+|+|.+++.. .+..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccc
Confidence 34445555333 578888888755555555544 257889999998877766 45688888876221
Q ss_pred ----EEEEEcC------CCCCEEEEEEeCC---CCEEEEEe-CCeEEEEECCCCCCceeE--------EEeecCCCceEE
Q 004737 611 ----CRLKLQG------HKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHS 668 (732)
Q Consensus 611 ----~i~~l~~------h~~~V~sla~spd---g~~Lasgs-Dg~I~IWDl~t~~~~~~i--------~~~~~~~~~I~s 668 (732)
..+.+.- ...+|..+.|+|- +..|++-. |+.|++||+..... ++. .........|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEE
Confidence 1122221 2467999999995 34566655 99999999987322 222 111222367889
Q ss_pred EEEeCCCCEEEEEE--cCCeEEEE
Q 004737 669 CVFHPTFPSLLVIG--CYETLELW 690 (732)
Q Consensus 669 l~fspdg~~L~sgs--~dg~I~Iw 690 (732)
++|..++-.|++.. ..|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999988788866 77777653
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.18 E-value=0.13 Score=63.51 Aligned_cols=236 Identities=12% Similarity=0.179 Sum_probs=141.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004737 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 534 (732)
Q Consensus 455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h 534 (732)
+.-.+|..+.||.-. ..++.|||+++...+..+.- ...|..=.|-.+. .|+..+ +..|.-|++.....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 345567777776654 67999999998777766653 3456666776543 444443 5589999998655566666555
Q ss_pred ----CcceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCC-eeEEEE--eCCCCEEEEEEc----
Q 004737 535 ----STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-ATQMRF--QPRLGRILAAAI---- 597 (732)
Q Consensus 535 ----~~~V~sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~--sp~g~~ll~~s~---- 597 (732)
...|..-..+++.++++++|= -.|.+.+|.++.+.. ..+.++.. ...+.. .+....+++-..
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence 456777778888888887763 347888888875432 12221111 111111 111122333222
Q ss_pred CCeEEEEECCCC---eEEE------EEcC---CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004737 598 ENYISILDVETQ---VCRL------KLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 664 (732)
Q Consensus 598 dg~I~IwDl~t~---~~i~------~l~~---h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~ 664 (732)
.+.++|.++... .... .+.. ...-..++..++.-.+++... -|.|.+||+.++ .++..-+....
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~ 301 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 301 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCC
Confidence 268888888542 1110 1111 122345677777766666666 899999999998 66665555566
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.|...+.+....-+++....|.|.-..+.+..++
T Consensus 302 ~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 6655555544444666667777766666665555
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.15 E-value=0.23 Score=49.33 Aligned_cols=175 Identities=10% Similarity=-0.058 Sum_probs=96.3
Q ss_pred CCeEEEEeCCCeEEEEecCCCC---c--eeEEeecC--CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----
Q 004737 504 LSRLATSSADRTVRVWDTENPD---Y--SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----- 571 (732)
Q Consensus 504 g~~Lasgs~Dg~I~IWDl~s~~---~--~~~~l~~h--~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i----- 571 (732)
..+|++...| +|++=...... . .... .+. =..+.+++|+|++. |.++ .+|.++-.+..+....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~-iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATL-IGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEE-EESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccc-cCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 4566777777 65554444332 1 1112 222 24688999999865 4444 5787777776542211
Q ss_pred -eEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCe
Q 004737 572 -GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL 641 (732)
Q Consensus 572 -~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-------i~~l~~h~~~V~sla~spdg~~LasgsDg~ 641 (732)
..+- .-.....+.|.+++..+++ .||.|+-++..+... ...-..--..+..|.|.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 1111 0011478899999877766 669998887643210 11111122468999999999999888 888
Q ss_pred EEEEECCCCCCce---eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737 642 VRVWSIGSGSKGE---CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 688 (732)
Q Consensus 642 I~IWDl~t~~~~~---~i~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I~ 688 (732)
++-+......... ....+. ..-.....+.|.+++..+++. ++.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 6544333211000 011111 122234556788888755444 66443
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.06 E-value=0.23 Score=49.33 Aligned_cols=172 Identities=13% Similarity=0.007 Sum_probs=96.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCe------eeeEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 004737 548 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 613 (732)
Q Consensus 548 ~~llaSgs~Dg~I~iWDl~t~~------~i~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~------i~ 613 (732)
+.+|++..+| +|+.=....+. ....+.. -..+..++|+|++..+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3455566666 55554443332 1122222 146789999997664444 888888888755211 11
Q ss_pred EEc--CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737 614 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETL 687 (732)
Q Consensus 614 ~l~--~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i----~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I 687 (732)
.+- +.. ...++.|.++|.+.++ +||.|+-++-.+......+ ..-...=..+..+.|.|+|... ++. ++.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcE
Confidence 111 111 1478999999998888 8899988876443221111 1111112457899999999844 444 8876
Q ss_pred EEEECCCCeE-------EEEc-cCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 688 ELWNMTENKT-------LTLS-AHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 688 ~IwDl~t~~~-------~~~~-~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
+-+....+.. ..+. ..-.....+.|.+++.+.+.. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5543332210 0111 222344557788888766655 7754
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.92 E-value=0.36 Score=50.73 Aligned_cols=185 Identities=10% Similarity=-0.013 Sum_probs=89.5
Q ss_pred CCCEEEEEEC-C---------CcEEEEEcCCCeEEEEe--c-cCCCceEEEEEcCCCCeEEEEeCC--------------
Q 004737 461 DGKLLATGGH-D---------KKAVLWCTESFTVKSTL--E-EHTQWITDVRFSPSLSRLATSSAD-------------- 513 (732)
Q Consensus 461 dg~~Lasgs~-D---------g~I~VWd~~t~~~~~~l--~-~h~~~V~~l~fspdg~~Lasgs~D-------------- 513 (732)
++++++.|+. + ..+.+||..+.+-...- . .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5667777765 2 46889998876533221 1 1111122222 467788888764
Q ss_pred -------------------------CeEEEEecCCCCceeEEeecCCcce-EEEEEcCCCCcEEEEEeC------CCcEE
Q 004737 514 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 561 (732)
Q Consensus 514 -------------------------g~I~IWDl~s~~~~~~~l~~h~~~V-~sl~fspdg~~llaSgs~------Dg~I~ 561 (732)
..+.+||..+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 5789999987654322111111111 233333 2456666653 34577
Q ss_pred EEEC--CCCeeeeEEec--cCC-eeEEEEeCCCCEEEEEEcC----------------------CeEEEEECCCCe--EE
Q 004737 562 YWSI--NNGSCAGVFKC--QSG-ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQV--CR 612 (732)
Q Consensus 562 iWDl--~t~~~i~~~~~--~~~-i~~v~~sp~g~~ll~~s~d----------------------g~I~IwDl~t~~--~i 612 (732)
+||+ .+.+....-.. ... ....+...++..+++|+.+ ..+.+||+.+.+ .+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 7887 44433322111 111 1112223344566666532 257899988753 33
Q ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEe-CC------eEEEEECCCCC
Q 004737 613 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 651 (732)
Q Consensus 613 ~~l~~h~~~V~sla~spdg~~Lasgs-Dg------~I~IWDl~t~~ 651 (732)
..+......-.+ +.-++++++.|+ ++ .|.++++++.+
T Consensus 301 ~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 333322222222 223566666666 32 45666887763
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.77 E-value=0.25 Score=57.67 Aligned_cols=195 Identities=5% Similarity=-0.017 Sum_probs=103.5
Q ss_pred CCCeEEEEeCC----CeEEEEecCCCCceeEEee------cCCcceEEEEEcC-CCCcEEEEEeCC------CcEEEEEC
Q 004737 503 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWSI 565 (732)
Q Consensus 503 dg~~Lasgs~D----g~I~IWDl~s~~~~~~~l~------~h~~~V~sl~fsp-dg~~llaSgs~D------g~I~iWDl 565 (732)
++.+++.|+.+ ..+.+||..+......... .....-.+++..+ + +.+++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence 45556666542 3577888877654322201 1111112233332 3 4566666643 35889999
Q ss_pred CCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEEc-----CCCCCEEEEEEeCC-CCEEE
Q 004737 566 NNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA 635 (732)
Q Consensus 566 ~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg--~I~IwDl~t~~~i~~l~-----~h~~~V~sla~spd-g~~La 635 (732)
.+.+....-... ..-.+++...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 886544332211 1123334434677788877654 79999999875433211 11122233555555 55666
Q ss_pred EEe---C-----CeEEEEECCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc--------CCeEEEEECCC
Q 004737 636 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC--------YETLELWNMTE 694 (732)
Q Consensus 636 sgs---D-----g~I~IWDl~t~~~-----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~--------dg~I~IwDl~t 694 (732)
.|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+. ...|.+||..+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 655 2 3588999988641 1222221111112223344444666777764 24699999998
Q ss_pred CeEE
Q 004737 695 NKTL 698 (732)
Q Consensus 695 ~~~~ 698 (732)
.+..
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 8766
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.76 E-value=2.6 Score=44.89 Aligned_cols=255 Identities=7% Similarity=-0.026 Sum_probs=119.7
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCC----cEEEEEcCCCeEEEEecc--------------CCCceEEEEEcC-C-CCeE
Q 004737 450 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 507 (732)
Q Consensus 450 ~~~V~~lafSp--dg~~Lasgs~Dg----~I~VWd~~t~~~~~~l~~--------------h~~~V~~l~fsp-d-g~~L 507 (732)
...|.+|++.| ++.++| ++..+ .|... .+.++....+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 454444 44344 34333 223332222211 112578899987 2 4566
Q ss_pred EEEeCCCeEEEEecCCCCceeEEeec-------------------CCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCC
Q 004737 508 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 567 (732)
Q Consensus 508 asgs~Dg~I~IWDl~s~~~~~~~l~~-------------------h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t 567 (732)
+.+...+.|... ..+......+.. ....|.+|.++|.. ..+++... ++.|...+-.
T Consensus 132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~Dg- 207 (394)
T 3b7f_A 132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDA- 207 (394)
T ss_dssp EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESST-
T ss_pred EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCC-
Confidence 666656655444 322222222211 12357889998853 34443333 4434443221
Q ss_pred CeeeeEEec--------------cCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC--CC---CCEEEEEE
Q 004737 568 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 627 (732)
Q Consensus 568 ~~~i~~~~~--------------~~~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~---~~V~sla~ 627 (732)
++.-..+.. ...+.++.+.+. .+.++++.. +.|+..+-. ++.-..+.. .. ..+.+|++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 221111110 023778888886 356666654 445555432 222222221 11 34677888
Q ss_pred eCC--CCEEEEEe-----------CCeEEEEECCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 004737 628 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 687 (732)
Q Consensus 628 spd--g~~Lasgs-----------Dg~I~IWDl~t~-~~~~~i~~-~~~~~~----~I~sl~fspdg-~~L~sgs~dg~I 687 (732)
+|. +.+++... ++...||...++ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 34444331 223456655543 22222211 111000 11357788753 447776666666
Q ss_pred EEEECCCCeEE-EEccCCCCeeEEEEe
Q 004737 688 ELWNMTENKTL-TLSAHDKLVSSLAAS 713 (732)
Q Consensus 688 ~IwDl~t~~~~-~~~~h~~~V~sla~s 713 (732)
+.-+ ..++.. .+..+-..|.++.|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5433 233322 333444567777764
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.13 E-value=1.8 Score=48.54 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC------ee-------eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~------~~-------i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
....+.++|||+++++++-.+.+|.++|+++- +. .......-+....+|.++|.-+.+..-|..|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 44578899999999999989999999998741 11 233334456788999999844444557999999
Q ss_pred EECCCC----------eEEEEEcCCCCCEEEEE-----EeCCCCEEEEEe----CCe----------EEEEECCCCCCce
Q 004737 604 LDVETQ----------VCRLKLQGHKNQVHSVC-----WNTSGEYLASVS----DEL----------VRVWSIGSGSKGE 654 (732)
Q Consensus 604 wDl~t~----------~~i~~l~~h~~~V~sla-----~spdg~~Lasgs----Dg~----------I~IWDl~t~~~~~ 654 (732)
|++... ..+.++.-|..+-.-.+ -.++|++|++.. |.. -.++|+.. .+.+
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dkM~ 482 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DEMK 482 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SSCE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-CceE
Confidence 998753 45556665544332221 146899998876 443 37788854 3445
Q ss_pred eEEEeecC
Q 004737 655 CIHELSCT 662 (732)
Q Consensus 655 ~i~~~~~~ 662 (732)
.++.....
T Consensus 483 lv~D~P~~ 490 (638)
T 3sbq_A 483 LVHDGPTF 490 (638)
T ss_dssp EEEEEEES
T ss_pred EEecCCCC
Confidence 66655443
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.08 E-value=1.7 Score=50.68 Aligned_cols=238 Identities=9% Similarity=0.012 Sum_probs=122.9
Q ss_pred EEE-EcCCCCEEEEEE-----CCCcEEEEEcCCCeEEE-Eec-cCCC------ceEEEEEcCCCCeEEEEe---------
Q 004737 455 SCH-FSPDGKLLATGG-----HDKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS--------- 511 (732)
Q Consensus 455 ~la-fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~-~l~-~h~~------~V~~l~fspdg~~Lasgs--------- 511 (732)
.+. ++||+++++.+- .-..|+++|+++++.+. .|. .-+. ....++|..+ ..++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence 344 889999876542 22479999999988763 121 0000 1133477633 3444332
Q ss_pred --CCCeEEEEecCCCCce-eEEeecCCcce-EEEEEcCCCCc----EEEEEeC---CCcEEEEECCC--CeeeeEEeccC
Q 004737 512 --ADRTVRVWDTENPDYS-LRTFTGHSTTV-MSLDFHPSKED----LLCSCDN---NSEIRYWSINN--GSCAGVFKCQS 578 (732)
Q Consensus 512 --~Dg~I~IWDl~s~~~~-~~~l~~h~~~V-~sl~fspdg~~----llaSgs~---Dg~I~iWDl~t--~~~i~~~~~~~ 578 (732)
....|+.|.+.+.... ...+.+....+ .....++++.. ++++.+. ...+++.|... ++.. .+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence 2357899988765322 23444433333 34445666653 4544432 24566767653 3322 222222
Q ss_pred CeeEEEEeCCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ec-CCCCCEEEEEEeCCCCEEEEEe-
Q 004737 579 GATQMRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS- 638 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~----------s~dg~I~IwDl~t~~-------~i~~-l~-~h~~~V~sla~spdg~~Lasgs- 638 (732)
... +....++..++.. ...+.|.++|+.+.. .... +. .....+..+.|..+ .++++..
T Consensus 291 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 291 DAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp TCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred cce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 222 2233343333322 235779999987631 1112 32 23346778888876 4555544
Q ss_pred CC--eEEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCeEE
Q 004737 639 DE--LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 698 (732)
Q Consensus 639 Dg--~I~IWDl~t~~-~~~~i~~~~~~~~~I~sl~fspdg~~L~sg-s~d---g~I~IwDl~t~~~~ 698 (732)
++ .|.++|+.++. ....+..+.. ...+....+++++..+++. +.. ..++.+|+. ++..
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred CCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 66 57788776542 1111111221 2456666667776544443 332 378888887 5443
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.94 E-value=5.6 Score=43.81 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC---eEEEEec---------cCCCceEEEEEcCC----CCeEEEEeC--
Q 004737 452 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 512 (732)
Q Consensus 452 ~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~---~~~~~l~---------~h~~~V~~l~fspd----g~~Lasgs~-- 512 (732)
.-+.|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 4555677899999975432 1222221 11356789999996 333333221
Q ss_pred C----------CeEEEEecCCC---------CceeEEee--cCCcceEEEEEcCCCCcEEEEEeCC--------------
Q 004737 513 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 557 (732)
Q Consensus 513 D----------g~I~IWDl~s~---------~~~~~~l~--~h~~~V~sl~fspdg~~llaSgs~D-------------- 557 (732)
+ ..|.-|.+... ...+..+. ........|.|.|||..++.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 13444555421 11122221 1123467899999986555555321
Q ss_pred --CcEEEEECCCC------e-------------eeeEEe-ccCCeeEEEEeCCC-----C-EEEEEEcCC----eEEEEE
Q 004737 558 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD 605 (732)
Q Consensus 558 --g~I~iWDl~t~------~-------------~i~~~~-~~~~i~~v~~sp~g-----~-~ll~~s~dg----~I~IwD 605 (732)
|.|.-.|.... . ....+. .......++|.|.. . +++++...| .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 23444444431 0 001111 23346678999973 3 344333212 123333
Q ss_pred CCCC------eEEEEEcCCC-CCEEEEEEeCC-------CCEEEEEeCCeEEEEECCCCCCceeEEEe-e--------cC
Q 004737 606 VETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 662 (732)
Q Consensus 606 l~t~------~~i~~l~~h~-~~V~sla~spd-------g~~LasgsDg~I~IWDl~t~~~~~~i~~~-~--------~~ 662 (732)
+..+ .++..+..|. ..+..+.|-.. +.+|+..-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3322 2333443221 46777877532 34555433666666665443211111111 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 004737 663 GNKFHSCVFHPTFPSLLVIG 682 (732)
Q Consensus 663 ~~~I~sl~fspdg~~L~sgs 682 (732)
...+..+.+.|+|..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998666655
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.75 E-value=5.2 Score=42.51 Aligned_cols=260 Identities=8% Similarity=-0.037 Sum_probs=121.0
Q ss_pred CEEEEEECCCcEEEEEcCC-CeEEEEe--ccCCCceEEEEEcC-CCCeEEEEeCCC--eEEEEecCCCCceeEEeec---
Q 004737 463 KLLATGGHDKKAVLWCTES-FTVKSTL--EEHTQWITDVRFSP-SLSRLATSSADR--TVRVWDTENPDYSLRTFTG--- 533 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t-~~~~~~l--~~h~~~V~~l~fsp-dg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~--- 533 (732)
..|.+|+..| +.+++... ++....+ ......|.+|++.| +...|+++...| -..||....+......+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence 3667777766 55555432 2222211 12345699999998 334444454444 0123333222212222110
Q ss_pred -----------CCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe--------------------ccCCe
Q 004737 534 -----------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQSGA 580 (732)
Q Consensus 534 -----------h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~~~i~~~~--------------------~~~~i 580 (732)
....|.++++.|. ...++ .+...+.|...+-. ++.-..+. ....+
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1125778899874 33444 44445555544322 22111111 01236
Q ss_pred eEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC-----C--------CCCEEEEEEeCC-CCEEEEEeCCeEEEE
Q 004737 581 TQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELVRVW 645 (732)
Q Consensus 581 ~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h--------~~~V~sla~spd-g~~LasgsDg~I~IW 645 (732)
.++.+.|. .+.++++..++.|...+-. ++.-..+.. + ...+.+|+++|+ ...|+++.++.|...
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence 78888874 4566666666655554322 211111110 0 124889999986 356666665555554
Q ss_pred ECCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CeEE-EEc-cCC-
Q 004737 646 SIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-AHD- 704 (732)
Q Consensus 646 Dl~t~~~~~~i~~~~~--~~---~~I~sl~fspd-g~~L~sgs~-----------dg~I~IwDl~t-~~~~-~~~-~h~- 704 (732)
+-. + .....+.. .. ..+..++++|. ...|+++.. ++...||...+ ++.. .+. +-.
T Consensus 259 ~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 259 DRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp ETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred CCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 422 2 11222211 11 23567788763 344555542 22344554443 2322 221 111
Q ss_pred -C-----CeeEEEEeCCC-CEEEEEECCCeEEE
Q 004737 705 -K-----LVSSLAASTVN-GMVASASHDKCVKI 730 (732)
Q Consensus 705 -~-----~V~sla~spdg-~~LaSgs~DG~I~I 730 (732)
. ....++++|.. ..|+.++.++.|.+
T Consensus 335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 0 12467887753 45666666665543
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.69 E-value=6.5 Score=43.32 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=117.8
Q ss_pred CceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCC--ceeEEee---------cCCcceEEEEEcCC---CCcEEEEEeC-
Q 004737 493 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 556 (732)
Q Consensus 493 ~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~--~~~~~l~---------~h~~~V~sl~fspd---g~~llaSgs~- 556 (732)
...+.|+|.||+. .|+++...|.|++++.+... ..+..+. .....+..|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999986 56666789999999754321 1111111 11356789999996 2234433321
Q ss_pred -C----------CcEEEEECCC----------CeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCC-------------
Q 004737 557 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 599 (732)
Q Consensus 557 -D----------g~I~iWDl~t----------~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg------------- 599 (732)
+ ..|.-|.+.. .+.+..+.. ......++|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1455566542 122222221 12367899999987777665432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEcCCCCCEEEEEEeCC-----CCE-EEEEeC-C----eEE
Q 004737 600 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR 643 (732)
Q Consensus 600 ----~I~IwDl~t~---------------------~~i~~l~~h~~~V~sla~spd-----g~~-LasgsD-g----~I~ 643 (732)
.|.-+|.+.. ..+.. .+|.. ...++|+|. |++ ++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444454431 01111 12332 356899997 443 433321 2 133
Q ss_pred EEECCCCCC---ceeEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEECCCCe----EEEEc--------
Q 004737 644 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-------- 701 (732)
Q Consensus 644 IWDl~t~~~---~~~i~~~~~~~-~~I~sl~fspdg~------~L~sgs~dg~I~IwDl~t~~----~~~~~-------- 701 (732)
|..+..+.. ...+..+..+. ..+..+.|-.... .++++...+.|....++... ...+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433221 12344444321 4567777754321 25566656777666665432 11221
Q ss_pred -cCCCCeeEEEEeCCCCEEEEEE
Q 004737 702 -AHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 702 -~h~~~V~sla~spdg~~LaSgs 723 (732)
.....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999777765
No 353
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=94.58 E-value=4.6 Score=42.31 Aligned_cols=262 Identities=7% Similarity=0.003 Sum_probs=137.4
Q ss_pred CEEEEEECCCcEEEEEcCCC-------eEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe---cCCCC-----c
Q 004737 463 KLLATGGHDKKAVLWCTESF-------TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD-----Y 526 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD---l~s~~-----~ 526 (732)
.++++.+.+|.|+--.+.+. +-+..+. ...+.+..+........|+.-+..|.++... +.... .
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 46677778888876553321 1111111 1234455555545556676666777665444 33221 1
Q ss_pred eeE---EeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-------eeeeEEeccCCeeEEEEeCCCCEEEE
Q 004737 527 SLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRILA 594 (732)
Q Consensus 527 ~~~---~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~-------~~i~~~~~~~~i~~v~~sp~g~~ll~ 594 (732)
++. .+. ....|..+...++ .+.+++..+.+|.|+...+... .....++....+..+........++.
T Consensus 84 ~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 111 111 2345665544432 2456668888999999887542 22223333455666666666688999
Q ss_pred EEcCCeEEEEECC--CC---------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc----eeEE-
Q 004737 595 AAIENYISILDVE--TQ---------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----ECIH- 657 (732)
Q Consensus 595 ~s~dg~I~IwDl~--t~---------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~----~~i~- 657 (732)
.+..|.+..+... .- .....+. ....|.++...+++.+|+..+ .|.++.-.+...... .-+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999999888776 21 1112232 345677776666666777777 888888876542110 1121
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------EEc--cCCCCeeEEEEeCC-CCEEEEEECCC
Q 004737 658 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK 726 (732)
Q Consensus 658 -~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-------~~~--~h~~~V~sla~spd-g~~LaSgs~DG 726 (732)
.+......+..+....+...++..+.+|.+..++..+-... ... .....|.++...+. ...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222344555555555567888888888777776442221 111 23456666665443 34566666655
No 354
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.54 E-value=0.0065 Score=71.67 Aligned_cols=6 Identities=0% Similarity=0.146 Sum_probs=2.2
Q ss_pred CcEEEE
Q 004737 558 SEIRYW 563 (732)
Q Consensus 558 g~I~iW 563 (732)
|...+|
T Consensus 488 G~AI~y 493 (727)
T 4b8c_D 488 GCCIFF 493 (727)
T ss_dssp CCEEEC
T ss_pred cEEEEE
Confidence 333333
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.46 E-value=1.1 Score=52.20 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=83.7
Q ss_pred CCCEEEEEECC------CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEE
Q 004737 461 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 530 (732)
Q Consensus 461 dg~~Lasgs~D------g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~ 530 (732)
++++++.||.+ ..+.+||..+.+-... +...... .+++...++.+++.|+.++ .+.+||..+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77777887754 3588899887543221 2111111 2233324778888887654 6899999876542222
Q ss_pred e----ecCCcceEEEEEcCCCCcEEEEEeC--C-----CcEEEEECCCCe------eeeEEec--cCC-eeEEEEeCCCC
Q 004737 531 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFKC--QSG-ATQMRFQPRLG 590 (732)
Q Consensus 531 l----~~h~~~V~sl~fspdg~~llaSgs~--D-----g~I~iWDl~t~~------~i~~~~~--~~~-i~~v~~sp~g~ 590 (732)
. ........++.+..+...+++.|+. + ..+.+||+.+.. ....... ... -..++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222335555543456667764 2 458999998876 2222111 111 12333333356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 004737 591 RILAAAI--------ENYISILDVETQVCR 612 (732)
Q Consensus 591 ~ll~~s~--------dg~I~IwDl~t~~~i 612 (732)
.+++|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6667764 346999999987654
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.06 E-value=0.79 Score=47.06 Aligned_cols=245 Identities=13% Similarity=0.031 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l 531 (732)
.|..++..... .++. . ||.|+.|-....-.+-.-......|..|+...+.. ++. . ||.|..|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 46666665332 2333 4 88999996543211101111223577777754433 333 4 89999997654321 1111
Q ss_pred ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737 532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 610 (732)
Q Consensus 532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~ 610 (732)
..-...|..|+.... ..+ .-. ||.|+.|-.... ++-........+..++... .+.++.. +|.|+.|-.....
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111246777776643 333 334 899999986542 2211112234465555543 3334444 7999999765421
Q ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737 611 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690 (732)
Q Consensus 611 ~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw 690 (732)
.+..-......|..|+...+.. ++. .||.|+.|=.......- .-......|..++..... .++.. ++.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence 1100011234677777654443 333 69999999765432110 000112345555544333 34444 8999999
Q ss_pred ECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737 691 NMTENKTLTLSAHDKLVSSLAASTVNGMVAS 721 (732)
Q Consensus 691 Dl~t~~~~~~~~h~~~V~sla~spdg~~LaS 721 (732)
-......+. ....|..++......+.++
T Consensus 243 G~n~~gq~~---v~~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 243 GSSRTAPSS---VQSGVSSIEAGPNAAYALK 270 (282)
T ss_dssp STTCCCCGG---GSSCEEEEEECSSCEEEEE
T ss_pred cCCCCcccc---CCCCcEEEEECcCeEEEEe
Confidence 765543321 1346777776655444333
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.01 E-value=1.3 Score=45.30 Aligned_cols=217 Identities=10% Similarity=0.006 Sum_probs=114.1
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA- 571 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i- 571 (732)
..|..|+.... +.+.-. ||.|..|-...... +-........|..|+.... ..++. . ||.|+.|-....-.+
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776544 222235 99999997654321 1111112335777776533 34434 4 899999986542211
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCC
Q 004737 572 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 651 (732)
Q Consensus 572 ~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~ 651 (732)
........|..++... .+.++.. +|.|+.|-....-.+-.-......|..|+...+..+++ . ||.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCC
Confidence 1111224566666554 4555556 99999997654211100111234677776654433332 2 8999999765432
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 730 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I 730 (732)
... ........|..++.-... .++. .++.|+.|-....-.+ .-......|..++......++++ ||.|..
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEE
Confidence 111 000112345555554333 3333 6899999976543222 11122245777776544433333 899988
Q ss_pred e
Q 004737 731 W 731 (732)
Q Consensus 731 W 731 (732)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 8
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.96 E-value=7.9 Score=41.43 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=97.5
Q ss_pred cEEEEECCCC--eeeeEEecc-------CCeeEEEEe---CC----CCEEEEEEc-CCeEEEEECCCCeEEEEEcC----
Q 004737 559 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 617 (732)
Q Consensus 559 ~I~iWDl~t~--~~i~~~~~~-------~~i~~v~~s---p~----g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~---- 617 (732)
.|.+||+.+. +.++.+... .....+++. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 777777643 235677777 22 344555553 57899999999876655421
Q ss_pred C--------------CCCEEEEEEeCC----CCEEEEEeCCeEEEEECC-----CCCCceeEEEeecCC--CceEEEEEe
Q 004737 618 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 672 (732)
Q Consensus 618 h--------------~~~V~sla~spd----g~~LasgsDg~I~IWDl~-----t~~~~~~i~~~~~~~--~~I~sl~fs 672 (732)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-..+ ..-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 236888999998 788887772222344332 222112222222222 344556776
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC-C----eEE--EEccCCCCeeEEEEeCCCCEEEEEE
Q 004737 673 -PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS 723 (732)
Q Consensus 673 -pdg~~L~sgs~dg~I~IwDl~t-~----~~~--~~~~h~~~V~sla~spdg~~LaSgs 723 (732)
.+|..+++--....|..|+..+ . ... .....-..+..+.+..++.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5666555556667999999876 1 122 2222234578888877776555543
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=93.18 E-value=9.4 Score=39.85 Aligned_cols=232 Identities=8% Similarity=0.044 Sum_probs=127.2
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCe----EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---CCC-----ce
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS 527 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s~~-----~~ 527 (732)
|+..++++.+.+|.|+--.+...+ ....+..+ +.+..+........|+..+..|.+.-+... ... .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788888999998876544211 11122323 345555555455677777788876665543 211 11
Q ss_pred eE---EeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC--------CeeeeEEeccCCeeEEEEeCCCCEEEE
Q 004737 528 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA 594 (732)
Q Consensus 528 ~~---~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t--------~~~i~~~~~~~~i~~v~~sp~g~~ll~ 594 (732)
+. .+. ....|..+...++ ....++.++.+|.++...+.. +.....+.....+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 2334555443332 133455778899999988742 222222333345555555556678999
Q ss_pred EEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCC----ceeEE--
Q 004737 595 AAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----GECIH-- 657 (732)
Q Consensus 595 ~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~----~~~i~-- 657 (732)
.+.+|.+..|+... |.....+. ....|.++...+++. .|+..+ .|..+..++..-.. ..-+.
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 99999999887642 11222232 334566665545454 555555 88888877754210 01111
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 658 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 658 -~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
.+...+..+..+....+...++..+..|.+..+++.+
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1222233555444444455677888888776666644
No 360
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=92.13 E-value=14 Score=39.31 Aligned_cols=233 Identities=10% Similarity=0.051 Sum_probs=131.4
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCC---------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---CCC
Q 004737 458 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD 525 (732)
Q Consensus 458 fSpdg~~Lasgs~Dg~I~VWd~~t---------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s~~ 525 (732)
+-++..++++.+.+|.|+--.+.. +..-..++ ..+.+..+........|+..+..|.+.-+... ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999765432 22223344 34566666666666777778888877665532 211
Q ss_pred -----ceeE---EeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEeCC
Q 004737 526 -----YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 588 (732)
Q Consensus 526 -----~~~~---~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~sp~ 588 (732)
..+. .+. ....|.++....+ ....++.++..|.++...+.. +.....++....+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 1111 122 2345665544321 234556788899999988643 222223333345555655566
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeC------------------------------
Q 004737 589 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 629 (732)
Q Consensus 589 g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~sp------------------------------ 629 (732)
...++..+.+|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67899999999988887542 11122222 234565555444
Q ss_pred -----CCCEEEEEe-CCeEEEEECCCCCC----ceeEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 630 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 630 -----dg~~Lasgs-Dg~I~IWDl~t~~~----~~~i~--~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
++.+|++.+ .|..+...+..-.. ..-+. .+....+.+..+.+..+...++..+..|.+.-..+.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 345677777 88888887653211 01111 222223455555444555567777777766555543
No 361
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=91.18 E-value=17 Score=38.51 Aligned_cols=228 Identities=10% Similarity=0.099 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCeEEEEecCCCC---------c-eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004737 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563 (732)
Q Consensus 495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~---------~-~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iW 563 (732)
|..|+.. ....+.-..||.|..|-..... . ....+.. ....+..++++......+ .-..||.|+.|
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYSW 131 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEEE
Confidence 4445432 3455566688999999643211 0 0111111 122344455554433444 55669999999
Q ss_pred ECCCCe---------e--eeEEeccC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEcC-C
Q 004737 564 SINNGS---------C--AGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-H 618 (732)
Q Consensus 564 Dl~t~~---------~--i~~~~~~~--~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----------~-~i~~l~~-h 618 (732)
-....- . ...+..-. .|..++. ...+.++...+|.|+.|=.... . ....+.. .
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 653210 1 11111112 3444443 4467778888999999965320 1 1112221 2
Q ss_pred CCCEEEEEEeCCCCE-EEEEeCCeEEEEECCCCC------Cce--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737 619 KNQVHSVCWNTSGEY-LASVSDELVRVWSIGSGS------KGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLE 688 (732)
Q Consensus 619 ~~~V~sla~spdg~~-LasgsDg~I~IWDl~t~~------~~~--~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~ 688 (732)
...|..|+......+ ++...||.|+.|-..... ... ....+.. ....|..++.- ..+.++...++.|+
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~ 287 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVY 287 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEE
Confidence 345777776543233 444449999999654310 001 1111111 12235544443 34566678889999
Q ss_pred EEECCCC----------e--EEEEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 689 LWNMTEN----------K--TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 689 IwDl~t~----------~--~~~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.|-.... . +..+.. ....|..|+.. ..+.+....||.|+.|
T Consensus 288 ~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 288 TWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 9965321 1 112222 22356666654 3344555788888888
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=91.12 E-value=16 Score=37.86 Aligned_cols=230 Identities=9% Similarity=0.054 Sum_probs=126.1
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEE---------EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---- 526 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~~~---------~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~---- 526 (732)
++..++++.+.+|.|+--.+...+.. ..+..+ +.+..+........++..+..|.++-+....-..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678899999999998876543221 112222 4455555555566788888899877766542100
Q ss_pred ----e---eEEeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEeCCCC
Q 004737 527 ----S---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 590 (732)
Q Consensus 527 ----~---~~~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~sp~g~ 590 (732)
. ...+. ....|.++...++ ....++..+..|.++...+.. |.....+.....+..+.......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 0 00122 2234555544331 233444677899999888743 22222333344566666655567
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC----ceeE
Q 004737 591 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECI 656 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~----~~~i 656 (732)
.++..+.+|.+..+.... |.....+. ....|.++....++..|++.+ .|..+..++..-.. ..=+
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv 242 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY 242 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE
Confidence 899999999999997653 22222333 245666666655566566666 88888888754211 0111
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 657 HELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 657 ~~~~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
..+. .....+..+........++..+..|.+.-...
T Consensus 243 ~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 243 TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 1121 12234443333334455666666664433343
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=90.86 E-value=15 Score=37.26 Aligned_cols=196 Identities=10% Similarity=-0.028 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEE---EecCCCCceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC-
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRV---WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG- 568 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~I---WDl~s~~~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWDl~t~- 568 (732)
.+..+.......+|+.-+.+|.++- |++......- .+ .....|..+.. .+ .+..++..+.+|.|+...+...
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3444443334445555666666554 3332211111 12 23455666644 32 3456668888999999987543
Q ss_pred -----eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737 569 -----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYL 634 (732)
Q Consensus 569 -----~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~L 634 (732)
.....++....+..+........++..+..|.++.+.... |.....+. ....|.++...+++.++
T Consensus 102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEE
Confidence 2222333445566666666667899999999998887532 22222333 23566666655666666
Q ss_pred EEEe-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 004737 635 ASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 694 (732)
Q Consensus 635 asgs-Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t 694 (732)
+..+ .|.++...+..-.. ..-+..+ .....+..+....+...++..+.+|.+.. ++..+
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 6666 88888887653211 1112222 23444555544444456788888887777 76644
No 364
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=90.70 E-value=19 Score=38.21 Aligned_cols=226 Identities=7% Similarity=0.008 Sum_probs=120.7
Q ss_pred EcCCCCeEEEEeCCCeEEEEecCC------C--CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE---CCC-
Q 004737 500 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN- 567 (732)
Q Consensus 500 fspdg~~Lasgs~Dg~I~IWDl~s------~--~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD---l~t- 567 (732)
+-++..++++.+.+|.|+--.+.. + ......++ ..+.+..+........+++ .+..|.++.+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~-fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLT-FTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEE-EETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEE-EeCCCeEEEEEHHHCcCC
Confidence 346778999999999999865432 1 11122233 3455666655555445554 44567666554 322
Q ss_pred -----Ceeee---EEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeC
Q 004737 568 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 629 (732)
Q Consensus 568 -----~~~i~---~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~sp 629 (732)
|..+. .+.....|..+.... .+.+++.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22221 122334555554432 356899999999999887642 222223332 44555555554
Q ss_pred CCCEEEEEe-CCeEEEEECCCCCC----ceeEEEee-cCCCceEEEEEeC------------------------------
Q 004737 630 SGEYLASVS-DELVRVWSIGSGSK----GECIHELS-CTGNKFHSCVFHP------------------------------ 673 (732)
Q Consensus 630 dg~~Lasgs-Dg~I~IWDl~t~~~----~~~i~~~~-~~~~~I~sl~fsp------------------------------ 673 (732)
....|+..+ +|.+..|+...-.. ..-+..+. ..+..|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 444455555 88877777543210 01111111 1234455554443
Q ss_pred -----CCCEEEEEEcCCeEEEEECCCCeE--------E--EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737 674 -----TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 728 (732)
Q Consensus 674 -----dg~~L~sgs~dg~I~IwDl~t~~~--------~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I 728 (732)
.+.++++++..|..+...+..... . .+....+.+..+.+..+...|+..+..|.+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456799999999888887754322 1 222233455555544444455555666654
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.80 E-value=20 Score=36.95 Aligned_cols=232 Identities=9% Similarity=0.068 Sum_probs=126.3
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEE---------EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec---CCCCc-
Q 004737 460 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDY- 526 (732)
Q Consensus 460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~---------~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl---~s~~~- 526 (732)
|+..++++.+.+|.|+--.+.+.+... .+..+ +.+..+........|+..+..|.++-+.. .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 355678888999999877765533221 12222 34444444445567777778887665544 22211
Q ss_pred ----eeE---EeecCCcceEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEeCCCC
Q 004737 527 ----SLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 590 (732)
Q Consensus 527 ----~~~---~l~~h~~~V~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~sp~g~ 590 (732)
++. .+. ....|..+...+ +....++..+.+|.++...+.. +.....+.....+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 111 122 334566554422 1234455778899999987642 22222233335555655555667
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC------Cce
Q 004737 591 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 654 (732)
Q Consensus 591 ~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~------~~~ 654 (732)
.++..+.+|.+..++... +.....+. ....|.++....++..|+..+ .|.++..++..-. ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999998887642 12222232 345677776555556666666 8888888774321 111
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
....+....+.+..+....+...++..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1112222234555554444455577777787766666544
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.58 E-value=22 Score=37.08 Aligned_cols=195 Identities=11% Similarity=0.035 Sum_probs=107.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEE---cCC------CeEEEE---eccCCCceEEE-EEcC--CCCeEEEEeCCCeE
Q 004737 452 KVESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTV 516 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd---~~t------~~~~~~---l~~h~~~V~~l-~fsp--dg~~Lasgs~Dg~I 516 (732)
.+..+........|+..+..|.++-.. +.. |..+.. +. ....|..+ .+.. +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344454444555666666777666544 332 222211 22 23445554 4432 57899999999999
Q ss_pred EEEecCCCCc------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC--C---------CeeeeEEeccCC
Q 004737 517 RVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSG 579 (732)
Q Consensus 517 ~IWDl~s~~~------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~--t---------~~~i~~~~~~~~ 579 (732)
+...+..-.. ....+.. .+.+..+........++ ..+..|.+..+.+. . |...-.+.....
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 9988764211 1112333 34555555544444454 55668888888766 2 111122333455
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eEEE--EEcCCCCCEEEEEEeCCCC-EEEEEeCCeEEEEECCC
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGS 649 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-------~~i~--~l~~h~~~V~sla~spdg~-~LasgsDg~I~IWDl~t 649 (732)
+..+...+.+..++.++..|.++...+..- +-+. .+....+.+..+....+.. +++...+|.+..++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 777766666678999999999988875421 1122 2222234555554444444 44444478777776543
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=89.47 E-value=38 Score=39.73 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=78.1
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccC-------CCceEEEEEcCC-CCeEEEEeCCCe----E
Q 004737 450 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 516 (732)
Q Consensus 450 ~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------~~~V~~l~fspd-g~~Lasgs~Dg~----I 516 (732)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999995 34566677777766554 344444444332 236999999984 344555443311 3
Q ss_pred EEEecCCCCceeEEeecC-------C--cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------ccCCe
Q 004737 517 RVWDTENPDYSLRTFTGH-------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 580 (732)
Q Consensus 517 ~IWDl~s~~~~~~~l~~h-------~--~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-------~~~~i 580 (732)
.||...++.......... . ..+..++++|.....++.+...+.|.. ....++.=..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 455444433333322210 1 135678888865556656653443321 222222111111 11347
Q ss_pred eEEEEeCC-CCEEEEEEcC
Q 004737 581 TQMRFQPR-LGRILAAAIE 598 (732)
Q Consensus 581 ~~v~~sp~-g~~ll~~s~d 598 (732)
..+.+.|. ...++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888875 3466666655
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.69 E-value=20 Score=41.71 Aligned_cols=223 Identities=9% Similarity=0.041 Sum_probs=113.1
Q ss_pred EEEE-EcCCCCeEEEEe-C----CCeEEEEecCCCCceeEEee-cCCc------ceEEEEEcCCCCcEEEEEe-------
Q 004737 496 TDVR-FSPSLSRLATSS-A----DRTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------- 555 (732)
Q Consensus 496 ~~l~-fspdg~~Lasgs-~----Dg~I~IWDl~s~~~~~~~l~-~h~~------~V~sl~fspdg~~llaSgs------- 555 (732)
..+. ++|++++++.+- . -..|+++|+.+++..--.+. .-+. ....++|..+ +.++++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 3444 888988876542 2 23799999998764221222 0000 1134477633 45554421
Q ss_pred ---CCCcEEEEECCCCe--eeeEEeccCC--eeEEEEeCCCCE-----EEEEEc---CCeEEEEECCC--CeEEEEEcCC
Q 004737 556 ---NNSEIRYWSINNGS--CAGVFKCQSG--ATQMRFQPRLGR-----ILAAAI---ENYISILDVET--QVCRLKLQGH 618 (732)
Q Consensus 556 ---~Dg~I~iWDl~t~~--~i~~~~~~~~--i~~v~~sp~g~~-----ll~~s~---dg~I~IwDl~t--~~~i~~l~~h 618 (732)
....|+.|.+.+.. -...+..... ......+.++++ ++..+. ...+++.|... ++ ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 12468899886642 2233332222 233445566552 333332 24567777653 33 2233222
Q ss_pred CCCEEEEEEeCCCCEEEEE-----------eCCeEEEEECCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEE
Q 004737 619 KNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVI 681 (732)
Q Consensus 619 ~~~V~sla~spdg~~Lasg-----------sDg~I~IWDl~t~~~~----~~i~~-~-~~~~~~I~sl~fspdg~~L~sg 681 (732)
... .+....++.+++.. ..+.|.+.|+.+.... ..... + ......+..+.+..+ ..+++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 221 12334455555522 1557889998764210 11112 2 223445777888876 456666
Q ss_pred EcCC--eEEEEECCCCeE--EE-Ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 004737 682 GCYE--TLELWNMTENKT--LT-LS-AHDKLVSSLAASTVNG-MVASAS 723 (732)
Q Consensus 682 s~dg--~I~IwDl~t~~~--~~-~~-~h~~~V~sla~spdg~-~LaSgs 723 (732)
..++ .|+++|+.++.. .. +. ...+.|..+.+++++. ++++.+
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 6666 578888776642 12 21 1134566666666665 444443
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=85.85 E-value=34 Score=35.15 Aligned_cols=225 Identities=9% Similarity=0.020 Sum_probs=116.9
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCcee--------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC---
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN--- 567 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~--------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl---~t--- 567 (732)
|+..++++.+.+|.|+--.+.+-.... ..+..+ +.+..+........++ ..+..|.++-+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 345678889999999877765421100 112222 3344444333334455 4445777665543 22
Q ss_pred ---Ceeee---EEeccCCeeEEEEe---CCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCCC
Q 004737 568 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 631 (732)
Q Consensus 568 ---~~~i~---~~~~~~~i~~v~~s---p~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spdg 631 (732)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+......
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22211 12333445555442 3456799999999999987642 2222233333 556555555444
Q ss_pred CEE-EEEeCCeEEEEECCCCCC----ceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------E
Q 004737 632 EYL-ASVSDELVRVWSIGSGSK----GECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------T 697 (732)
Q Consensus 632 ~~L-asgsDg~I~IWDl~t~~~----~~~i~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------~ 697 (732)
..| +...+|.+..++...-.. ..-+..+. ..+..|..+....++..+++.+..|.++-.++.... .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 444 444488887777643211 01111111 134556666655566779999999988888763321 1
Q ss_pred E--EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 698 L--TLSAHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 698 ~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
. .+..-.+.+..+....+..-|+..+.+|.+.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 1 2222334555555444445555566666543
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.62 E-value=40 Score=34.08 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=108.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEE---EcCCCeEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC-
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 525 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VW---d~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~- 525 (732)
+.|.++.......+|+..+.+|.++-- ++..+.....+. ....|..+.... +..+++.++.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 456555555555566667777776643 333221111133 345566664421 46789999999999999876531
Q ss_pred ----ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEEeccCCeeEEEEeCCCCEE
Q 004737 526 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 592 (732)
Q Consensus 526 ----~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---------~~~i~~~~~~~~i~~v~~sp~g~~l 592 (732)
.....+.. .+.+..+........++ ..+..|.+..++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 11112332 34566655554434444 566688888887532 2222223334556666666667789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCeEEE--EECC
Q 004737 593 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS-GEYLASVSDELVRV--WSIG 648 (732)
Q Consensus 593 l~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spd-g~~LasgsDg~I~I--WDl~ 648 (732)
+..+..|.++...+.. ++-+..+ ...+.+..+....+ ..+++...+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999998887642 2222223 23344555443333 33444444777666 6654
No 371
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=82.96 E-value=53 Score=34.99 Aligned_cols=227 Identities=5% Similarity=0.018 Sum_probs=117.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-----------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737 494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 562 (732)
Q Consensus 494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-----------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i 562 (732)
.|..|+.. ..+.+.-..||.|..|-...... ..-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 46666654 44666667899999996532110 0001111234566666543 33334567999999
Q ss_pred EEC--CC-Cee--------eeEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--------------------
Q 004737 563 WSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-------------------- 609 (732)
Q Consensus 563 WDl--~t-~~~--------i~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-------------------- 609 (732)
|-. .. +++ ...... ...|..++. ...+.++...+|.|+.|=....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 985 22 221 111111 223444444 3467778888999999953211
Q ss_pred ---eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCC--------CceeEEEeecCCCceEEEEEeCCCCEE
Q 004737 610 ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSL 678 (732)
Q Consensus 610 ---~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~--------~~~~i~~~~~~~~~I~sl~fspdg~~L 678 (732)
.+..........|..|+......+++...++.|+.|-..... ..............|..++. ...+.
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht 306 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHT 306 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEE
T ss_pred cccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeE
Confidence 111111122345666665533222222248888888654311 01111122222344554443 34556
Q ss_pred EEEEcCCeEEEEECCCC-------------eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 679 LVIGCYETLELWNMTEN-------------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 679 ~sgs~dg~I~IwDl~t~-------------~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
++...++.|+.|-.... .+..+..-...|..|+.... +.+....||.|+.|
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~w 370 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEE
Confidence 77788899999965321 11122222336777776543 33444688999888
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=82.85 E-value=46 Score=34.23 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=107.7
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCce------e--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---C--
Q 004737 502 PSLSRLATSSADRTVRVWDTENPDYS------L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 568 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~~~~------~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---~-- 568 (732)
++..++++.+.+|.|+-..+..-... . ..+... +.+..+........++ ..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 46678899999999998876542110 1 112322 3444444444434444 556688877766531 1
Q ss_pred ----ee---eeEEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCCC
Q 004737 569 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 631 (732)
Q Consensus 569 ----~~---i~~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spdg 631 (732)
.. ...+.....+..+...+ +..+++.++..|.++...+.. +.....+.. .+.+..+......
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11122334455554433 457899999999999887743 222223433 4566666655544
Q ss_pred CEEEEEe-CCeEEEEECCCC----CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737 632 EYLASVS-DELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694 (732)
Q Consensus 632 ~~Lasgs-Dg~I~IWDl~t~----~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t 694 (732)
..|+..+ +|.+..+....- ....-+..+.- .+..|..+....++..+++.+..|.++..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 5555555 898888887542 11111222221 245566666666667799999999988888754
No 373
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.46 E-value=53 Score=34.65 Aligned_cols=225 Identities=11% Similarity=0.075 Sum_probs=116.3
Q ss_pred CEEEEEECCCcEEEEEcCC-----------CeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-----
Q 004737 463 KLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----- 525 (732)
Q Consensus 463 ~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~----- 525 (732)
...+.-..||.|+.|-... ......+.. ....+..++++....+.+.-..||.|..|-.....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 3445556678888884321 011122222 22345666777666777777889999999643211
Q ss_pred ----c-eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-e--------ee--eEEec--cCCeeEEEEe
Q 004737 526 ----Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-S--------CA--GVFKC--QSGATQMRFQ 586 (732)
Q Consensus 526 ----~-~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~--------~i--~~~~~--~~~i~~v~~s 586 (732)
. ....+.. ....|..|+.-. ...+.-..+|.|+.|-.... + .. ..+.. ...+..++..
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 0 0111111 122566666542 33334556999999975421 0 11 11111 1235555554
Q ss_pred CCCCEEEEEEcCCeEEEEECCC----------C-eEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC----
Q 004737 587 PRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG---- 650 (732)
Q Consensus 587 p~g~~ll~~s~dg~I~IwDl~t----------~-~~i~~l~~-h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~---- 650 (732)
....+.++...+|.|+.|-... . .....+.. ....|..|+...+ ..++...||.|+.|=....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCC
Confidence 4346778888999999996432 1 11122222 2234666665432 2333344889999975431
Q ss_pred --CCce--eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 651 --SKGE--CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 651 --~~~~--~i~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
.... ....+. .....|..++. ...+.++...++.|+.|-..
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred CCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence 0001 111111 12234555544 34456777889999999764
No 374
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.37 E-value=96 Score=36.26 Aligned_cols=144 Identities=11% Similarity=0.145 Sum_probs=71.0
Q ss_pred CCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCceeEEeecC-------CcceEEEEEcCCCCcEEEEEeCCCc----
Q 004737 492 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 559 (732)
Q Consensus 492 ~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-------~~~V~sl~fspdg~~llaSgs~Dg~---- 559 (732)
...|.+|+++|. ...++++...+.|...+ ++......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 45667777666654443 222233333321 2469999999864444444432211
Q ss_pred EEEE-ECCCCeeeeEEecc--------C--CeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC---eEEEEEc---CCCCC
Q 004737 560 IRYW-SINNGSCAGVFKCQ--------S--GATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ 621 (732)
Q Consensus 560 I~iW-Dl~t~~~i~~~~~~--------~--~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~---~~i~~l~---~h~~~ 621 (732)
-.|| ....++.=..+... . .+..+++.|.. +.++++...+.|.. ....+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2333 23333322222210 1 24567888754 34555543444322 22222 2221111 11245
Q ss_pred EEEEEEeCC-CCEEEEEe
Q 004737 622 VHSVCWNTS-GEYLASVS 638 (732)
Q Consensus 622 V~sla~spd-g~~Lasgs 638 (732)
+..|.++|. ...|+++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 788999884 34454444
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=73.86 E-value=87 Score=32.37 Aligned_cols=225 Identities=12% Similarity=0.113 Sum_probs=118.2
Q ss_pred CCCCeEEEEeCCCeEEEEecCCC---CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC------Ce
Q 004737 502 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 569 (732)
Q Consensus 502 pdg~~Lasgs~Dg~I~IWDl~s~---~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl---~t------~~ 569 (732)
|+..++++.+.+|.|+--.+..- ......+... +.+..+........++ ..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678889999999988765421 1111123333 3444444444434555 4445777666544 21 22
Q ss_pred eee---EEeccCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCC--------CeEEEEEcCCCCCEEEEEEeCCCCEEE
Q 004737 570 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVET--------QVCRLKLQGHKNQVHSVCWNTSGEYLA 635 (732)
Q Consensus 570 ~i~---~~~~~~~i~~v~~sp~---g~~ll~~s~dg~I~IwDl~t--------~~~i~~l~~h~~~V~sla~spdg~~La 635 (732)
.+. .+.....|..+....+ +.+++.++.+|.++...+.. +.....+.. .+.+..+........|+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEE
Confidence 111 1222344555443332 56899999999999987742 222223332 25566655554444454
Q ss_pred EEe-CCeEEEEECCCCC----CceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCe--------EEEE
Q 004737 636 SVS-DELVRVWSIGSGS----KGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------TLTL 700 (732)
Q Consensus 636 sgs-Dg~I~IWDl~t~~----~~~~i~~~~~-~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~~--------~~~~ 700 (732)
..+ +|.+..++...-. ...-+..+.- .+..|.++...+++. .+++.+..|..+..++.... ...+
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 444 8988888764321 1111222221 234566665544455 78999999988877765421 1111
Q ss_pred ---ccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737 701 ---SAHDKLVSSLAASTVNGMVASASHDKCVK 729 (732)
Q Consensus 701 ---~~h~~~V~sla~spdg~~LaSgs~DG~I~ 729 (732)
......+..+....++..|+..+..|.+.
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 12222455443333344555666666543
No 376
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.14 E-value=48 Score=39.88 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 488 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 488 (732)
..|.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 46788888889999999999999999999999988775
No 377
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=71.47 E-value=1.5e+02 Score=34.15 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=57.7
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCeEEEEeccC-------CCceEEEEEcC-CCCeEEEEeCC-------Ce
Q 004737 452 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------RT 515 (732)
Q Consensus 452 ~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------~~~V~~l~fsp-dg~~Lasgs~D-------g~ 515 (732)
.|.+|+|+|.. ..++++...+.|..++ +.++.-..+..+ ...|.+|+++| +...++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999963 4555566566666654 234443334322 24599999998 43445444321 12
Q ss_pred EEEEecCCCCceeEEee-cCC--------cceEEEEEcCCCCcEEEEEe
Q 004737 516 VRVWDTENPDYSLRTFT-GHS--------TTVMSLDFHPSKEDLLCSCD 555 (732)
Q Consensus 516 I~IWDl~s~~~~~~~l~-~h~--------~~V~sl~fspdg~~llaSgs 555 (732)
..||.-.++........ ... ..+..|+++|.....++.+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 55666554433333222 111 12467999987655565665
No 378
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=70.30 E-value=1.2e+02 Score=32.30 Aligned_cols=166 Identities=7% Similarity=0.063 Sum_probs=90.5
Q ss_pred CcEEEEEcCCC--eEEEEecc------CCCceEEEEEc---CC----CCeEEEEe-CCCeEEEEecCCCCceeEEee---
Q 004737 472 KKAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT--- 532 (732)
Q Consensus 472 g~I~VWd~~t~--~~~~~l~~------h~~~V~~l~fs---pd----g~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~--- 532 (732)
-+|.+||+.+. +.++++.- ....+.++++. ++ +.+++.+. ...-|.|+|+.+++. .+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~ 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTF 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCC
Confidence 36888999998 88877642 23457888887 22 33444443 467899999997652 33221
Q ss_pred -----------cC----CcceEEEEEcCC----CCcEEEEEeCCCcEEEEE---CCCC---eeeeEEeccC---CeeEEE
Q 004737 533 -----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQS---GATQMR 584 (732)
Q Consensus 533 -----------~h----~~~V~sl~fspd----g~~llaSgs~Dg~I~iWD---l~t~---~~i~~~~~~~---~i~~v~ 584 (732)
+. ...|..|+++|+ ++.+.+..-....++-.. ++.. ..+..+...+ ....++
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 10 136778888887 455554443333333222 1111 1222222222 233456
Q ss_pred EeC-CCCEEEEEEcCCeEEEEECCC-C----eEEEEE-cCCCCCEEEEEEeCCCCEEEEEe
Q 004737 585 FQP-RLGRILAAAIENYISILDVET-Q----VCRLKL-QGHKNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 585 ~sp-~g~~ll~~s~dg~I~IwDl~t-~----~~i~~l-~~h~~~V~sla~spdg~~Lasgs 638 (732)
+.+ +|..+++--..+.|..|+..+ . ...... ...-..+..+.+..+|.+.+...
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 654 444444445568999999876 1 111111 11333577788777776555443
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=67.44 E-value=1.8e+02 Score=33.48 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=35.0
Q ss_pred CceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeecC-------CcceEEEEEcCCCC-cEEEEE
Q 004737 493 QWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKE-DLLCSC 554 (732)
Q Consensus 493 ~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-------~~~V~sl~fspdg~-~llaSg 554 (732)
+.|..|+|+|.. ..++++...+.|..++ ........+..+ ...|.+|+++|... .+++.+
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 379999999863 5566666556554443 333233333222 24589999998543 444443
No 380
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.68 E-value=2.4e+02 Score=33.62 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=32.4
Q ss_pred eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004737 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 616 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~ 616 (732)
+.+++..++..++++.+.|+++++|++.++.++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677788888899999999999999999999988753
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.68 E-value=1e+02 Score=35.55 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 489 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 489 (732)
..|.|+.+ +..++++-+.|+++|+|++.++.++.+..
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 34666655 46799999999999999999999887764
No 382
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=58.18 E-value=1.9e+02 Score=30.50 Aligned_cols=228 Identities=12% Similarity=0.156 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----------eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIR 561 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~----------~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~ 561 (732)
..|..|+... .+.+.-..||.|..|-...... ....+.. ....|..|+.-.. +.++....++.|+
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 4565555543 3445556788888885432110 0111111 1235666665532 3443444345899
Q ss_pred EEECCCC---------eeee--EEeccC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEcC
Q 004737 562 YWSINNG---------SCAG--VFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG 617 (732)
Q Consensus 562 iWDl~t~---------~~i~--~~~~~~--~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----------~-~i~~l~~ 617 (732)
.|-.... .... .+.... .|..++. ...+.++...+|.|+.|-.... . ....+..
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 9964321 1111 111112 3444444 4467778889999999965421 1 1112221
Q ss_pred -CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC------c-eeE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737 618 -HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G-ECI-HELS-CTGNKFHSCVFHPTFPSLLVIGCYETL 687 (732)
Q Consensus 618 -h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~------~-~~i-~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I 687 (732)
....|..|+...+ ..++...||.|+.|-...... . ... ..+. .....|..++. ...+.++...++.|
T Consensus 170 ~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~--G~~ht~~l~~~G~v 246 (406)
T 4d9s_A 170 FEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC--GWRHTISVSYSGAL 246 (406)
T ss_dssp GTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred cCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE--CCCcEEEEcCCCCE
Confidence 1235766665432 233333488999996543210 0 111 1111 11234444443 34456777788899
Q ss_pred EEEECCCC----------eEE--EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 688 ELWNMTEN----------KTL--TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 688 ~IwDl~t~----------~~~--~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
+.|-.... ... .+.. ....|..++.. ..+.+.-..||.|+.|
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGW 301 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEe
Confidence 99964321 111 1211 22346666543 2344445678888877
No 383
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.41 E-value=98 Score=34.95 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCEEEEEEcC------------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe
Q 004737 580 ATQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 580 i~~v~~sp~g~~ll~~s~d------------g~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs 638 (732)
.-.|+|++.|..+++-..+ +.+.+++..+++....+.++ ..+++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4668999998855554432 34677788888776666554 46899999999999887653
No 384
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=50.50 E-value=2.5e+02 Score=29.55 Aligned_cols=267 Identities=9% Similarity=0.056 Sum_probs=131.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-C----------eEEEEecc-CCCceEEEEEcCCCCeEEEEeCC-CeEE
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-F----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 517 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~----------~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D-g~I~ 517 (732)
..|..|+.- ....+.-..|+.|+.|-... + .....+.. ....|..|+...+ +.+....| +.|.
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 346555553 33445556688888885332 1 11122221 2235777776543 33333455 5999
Q ss_pred EEecCCCC--------c--eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---------ee--eEEe
Q 004737 518 VWDTENPD--------Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CA--GVFK 575 (732)
Q Consensus 518 IWDl~s~~--------~--~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---------~i--~~~~ 575 (732)
.|-..... . ....+.. ....|..|+.- ....+.-..+|.|+.|-....- .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99543210 0 0011111 22356666654 2333345679999999754321 11 1111
Q ss_pred ccC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------eEE-EEEcC-CCCCEEEEEEeCCCCEEEEEeCCe
Q 004737 576 CQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------VCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDEL 641 (732)
Q Consensus 576 ~~~--~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----------~~i-~~l~~-h~~~V~sla~spdg~~LasgsDg~ 641 (732)
... .|..++. ...+.++...+|.|+.|-.... ... ..+.. ....|..|+...+ ..++...+|.
T Consensus 169 ~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCC
T ss_pred ccCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCC
Confidence 112 3444443 4467777888999999964321 111 11211 2245666655322 2333344888
Q ss_pred EEEEECCCCCC------c-ee-EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----------e--EEEE
Q 004737 642 VRVWSIGSGSK------G-EC-IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN----------K--TLTL 700 (732)
Q Consensus 642 I~IWDl~t~~~------~-~~-i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~----------~--~~~~ 700 (732)
|+.|-...... . .. ...+.. ....|..++. ...+.++...++.|+.|-.... . +..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 99887543210 0 11 111111 1223444433 3455667778889999964321 1 1111
Q ss_pred c-cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 701 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 701 ~-~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
. .....|..++.. ..+.+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 223456666654 3344555678888888
No 385
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=48.05 E-value=1e+02 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.9
Q ss_pred EEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 624 SVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 624 sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
.+.+..||.+++...++. .||...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 467778888776544554 3676544
No 386
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=46.97 E-value=1.3e+02 Score=25.66 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=30.0
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 590 GRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 590 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
.+.+.-..||.+.+|+...+..+..-... ...-..+.+..+|.+++...++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 44444455555666654323333322111 112235677778887776545544 787654
No 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=44.56 E-value=3e+02 Score=28.84 Aligned_cols=226 Identities=10% Similarity=0.089 Sum_probs=116.0
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc------------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~------------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I 560 (732)
..|..|+... .+.+.-..||.|..|-...... ....+ .....|..|+.-. ...+.-..||.|
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~---~hs~alt~~G~v 132 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD---SHTAALTDDGRV 132 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS---SEEEEEETTSCE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC---CeEEEEcCCCcE
Confidence 4577766643 3455556889999996542110 00111 1123566666542 333455668999
Q ss_pred EEEEC--CC-Cee-----------eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-e---------------
Q 004737 561 RYWSI--NN-GSC-----------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-V--------------- 610 (732)
Q Consensus 561 ~iWDl--~t-~~~-----------i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~--------------- 610 (732)
+.|-. .. +++ ...+.....|..++. ...+.++...+|.|+.|=.... +
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 99975 21 111 111112234544444 3456777788999999965421 0
Q ss_pred -------EE-EEEcC----CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC------ceeE--EEeecCC---CceE
Q 004737 611 -------CR-LKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------GECI--HELSCTG---NKFH 667 (732)
Q Consensus 611 -------~i-~~l~~----h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~------~~~i--~~~~~~~---~~I~ 667 (732)
+. ..+.. ....|..|+...+ ..++...||.|+.|-...... .... ..+.... ..|.
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 00 01110 2245777766543 233334588999997653210 0111 1111111 2354
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCC----------CeE-E-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 668 SCVFHPTFPSLLVIGCYETLELWNMTE----------NKT-L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 668 sl~fspdg~~L~sgs~dg~I~IwDl~t----------~~~-~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.++. ...+.++...++.|+.|-... ... . ........|..|+... .+.+.-..||.|+.|
T Consensus 290 ~ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~--~hs~alt~~G~v~~w 361 (413)
T 1a12_A 290 GFSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGA--SVGYAVTKDGRVFAW 361 (413)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECS--SEEEEEETTSCEEEE
T ss_pred EEec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECc--ceEEEEeCCCCEEEe
Confidence 4443 344567777889999996432 111 1 2222223677776543 344455678888888
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.29 E-value=2.6e+02 Score=27.55 Aligned_cols=142 Identities=8% Similarity=-0.050 Sum_probs=75.2
Q ss_pred EEEEEECCCcEEEEEcCCCeE-EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC---CC---ceeE---Eeec
Q 004737 464 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD---YSLR---TFTG 533 (732)
Q Consensus 464 ~Lasgs~Dg~I~VWd~~t~~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s---~~---~~~~---~l~~ 533 (732)
.+++.+.+|.|+--....... ...+... +.+..+........|+..+..|.++-+.... .. .++. .+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 345556666665544332110 0112223 3344444433445666677888766654432 11 1110 122
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEe-CCCCEEEEEEcCCeEEEEE
Q 004737 534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 605 (732)
Q Consensus 534 h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~s-p~g~~ll~~s~dg~I~IwD 605 (732)
....|.++....++ ..++.++..|.++...+.. +.....++....+..+... ..+..++..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~-~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTT-CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCC-CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 23456666443333 3444778899999998742 2333333333445555555 3456899999999999998
Q ss_pred CCC
Q 004737 606 VET 608 (732)
Q Consensus 606 l~t 608 (732)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.01 E-value=1.8e+02 Score=28.81 Aligned_cols=141 Identities=10% Similarity=0.028 Sum_probs=74.6
Q ss_pred eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC---C----Ceee---eEEe
Q 004737 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N----GSCA---GVFK 575 (732)
Q Consensus 506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~---t----~~~i---~~~~ 575 (732)
.+++.+.+|.|+--...........+...+ .+..+........++ ..+..|.++-+.+. . |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll-~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVV-FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEE-EEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEE-EEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 456677788877665443211111233333 344443333334455 34457776655432 1 2211 1122
Q ss_pred ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEE
Q 004737 576 CQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWS 646 (732)
Q Consensus 576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~s-pdg~~Lasgs-Dg~I~IWD 646 (732)
....|..+....++.+++.++..|.++...+.. +.....+.. ...+..+... .++..|+..+ +|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 334566664434567788999999999987642 233334432 3455555554 2344455555 89888888
Q ss_pred CCC
Q 004737 647 IGS 649 (732)
Q Consensus 647 l~t 649 (732)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 390
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.91 E-value=69 Score=36.20 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCEEEEEECC------------CcEEEEEcCCCeEEEEeccC-CCceEEEEEcCCCCeEEEE
Q 004737 453 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 510 (732)
Q Consensus 453 V~~lafSpdg~~Lasgs~D------------g~I~VWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasg 510 (732)
.--|+|+++|.++++-..+ ..+.+.+..+++....+.++ ..+++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654322 24666677788877777655 4679999999999887665
No 391
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=38.73 E-value=3.7e+02 Score=28.18 Aligned_cols=186 Identities=5% Similarity=-0.079 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-------------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I 603 (732)
.|..|+.- ....+.-..||.|+.|-....- ....+.....+..++. ...+.++...+|.|+.
T Consensus 76 ~v~~va~G---~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~--G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG---GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--GDSHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC---SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CceEEeeC---CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc--CcCeEEEEeCCCeEEE
Confidence 46666654 2333455668999999754311 0111122334555444 3456777788999999
Q ss_pred EEC--CC-Ce---------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCC--------------------
Q 004737 604 LDV--ET-QV---------CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-------------------- 651 (732)
Q Consensus 604 wDl--~t-~~---------~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~-------------------- 651 (732)
|-. .. +. ...........|..|+... ...++...||.|+.|-.....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA-DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS-SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC-CeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 975 22 21 1111112334677776543 223344448899999643210
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----------eEE-EEccCCCCeeEEEEeCCCCEE
Q 004737 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----------KTL-TLSAHDKLVSSLAASTVNGMV 719 (732)
Q Consensus 652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~-----------~~~-~~~~h~~~V~sla~spdg~~L 719 (732)
...+..........|..++.... ..++....++.|+.|-.... ... ........|..|+.. ..+.
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht 306 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHHT 306 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSEE
T ss_pred ccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCeE
Confidence 00111111122234555544322 22333357888888854321 111 111113456666654 3344
Q ss_pred EEEECCCeEEEe
Q 004737 720 ASASHDKCVKIW 731 (732)
Q Consensus 720 aSgs~DG~I~IW 731 (732)
+.-..||.|+.|
T Consensus 307 ~alt~~G~v~~w 318 (423)
T 3mvd_K 307 VILTTDLKCSVV 318 (423)
T ss_dssp EEEETTCCEEEE
T ss_pred EEEeCCCcEEEE
Confidence 455678888877
No 392
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=37.96 E-value=4.7e+02 Score=29.24 Aligned_cols=229 Identities=9% Similarity=0.034 Sum_probs=119.7
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCc----------------------------EEEEEcCCCeEEEEeccC--CCc---
Q 004737 449 STSKVESCHFSPDGK-LLATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQW--- 494 (732)
Q Consensus 449 H~~~V~~lafSpdg~-~Lasgs~Dg~----------------------------I~VWd~~t~~~~~~l~~h--~~~--- 494 (732)
|-..+....|.-||+ -|++...+++ |.|+|-.+|+.+.++.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 666788888888887 4666766665 788888888887765321 111
Q ss_pred ------------eEEEEEcC-CCCeEEEEe---CCCeEEEEecCCCCceeE-EeecC-----------CcceEEEEEcCC
Q 004737 495 ------------ITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSLR-TFTGH-----------STTVMSLDFHPS 546 (732)
Q Consensus 495 ------------V~~l~fsp-dg~~Lasgs---~Dg~I~IWDl~s~~~~~~-~l~~h-----------~~~V~sl~fspd 546 (732)
..++++.. +...++.+- .-..|..||+..++...+ .+... ...+...++.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 22333321 112233332 123477888876553222 11110 123455556667
Q ss_pred CCcEEEEEe----CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC--CEEEEEEcCC----eEEEEECCCCeEEEEEc
Q 004737 547 KEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAAIEN----YISILDVETQVCRLKLQ 616 (732)
Q Consensus 547 g~~llaSgs----~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g--~~ll~~s~dg----~I~IwDl~t~~~i~~l~ 616 (732)
|..-|+.|+ .||.+ +|.... .+...+....|.|+. -.++.+..++ ...++|..+++.+....
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~~-------gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTGL-------GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECSC-------CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCceEEEeeeEECCCCCE-eeeCCC-------CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 766665543 34433 454421 233345556677763 4566666542 45678999999998876
Q ss_pred CC--CCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737 617 GH--KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 692 (732)
Q Consensus 617 ~h--~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl 692 (732)
.. .+......|.|+. -.+.+ +. .+|+.... .+.... ....-..+-|.-+...-+.- ...|.-|+.
T Consensus 409 ~~~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~----~i~~~~-p~~~N~~i~WdGDl~relld--~~~i~k~~~ 477 (591)
T 2zux_A 409 AGKDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGV----KIGSGV-PSSTNFGIWWDGDLLREQLD--SNRIDKWDY 477 (591)
T ss_dssp CSSCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSC----BCSSCC-CSCCSEEECCSSSSSCEEEE--TTEEEEEET
T ss_pred CCCCCCceeEEecCCCCCceEEEe--cC--ceECCCCC----EecCCC-CCCcceeEEECCCCcHhhhC--CceEEeccc
Confidence 43 3444444555552 22222 22 35554432 111110 11112245566665322222 236888998
Q ss_pred CCCe
Q 004737 693 TENK 696 (732)
Q Consensus 693 ~t~~ 696 (732)
..+.
T Consensus 478 ~~~~ 481 (591)
T 2zux_A 478 QNGV 481 (591)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 7775
No 393
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=36.83 E-value=14 Score=23.33 Aligned_cols=10 Identities=60% Similarity=0.796 Sum_probs=7.8
Q ss_pred HHHHHHHhhc
Q 004737 44 TKMYEDRLKK 53 (732)
Q Consensus 44 ~~~~~~~~~~ 53 (732)
-|+-||||||
T Consensus 21 lklheerlkk 30 (32)
T 1m3w_A 21 LKLHEERLKK 30 (32)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 4778889885
No 394
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.67 E-value=1e+02 Score=34.67 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=43.9
Q ss_pred CeeEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe
Q 004737 579 GATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 638 (732)
Q Consensus 579 ~i~~v~~sp~g~~ll~~s~------------dg~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs 638 (732)
....+.|.++|..+++... .+.|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3567999999877664432 126788888888776666543 45789999999999888754
No 395
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.20 E-value=1.3e+02 Score=33.96 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCCEEEEEEC------------CCcEEEEEcCCCeEEEEeccC-CCceEEEEEcCCCCeEEEE
Q 004737 452 KVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 510 (732)
Q Consensus 452 ~V~~lafSpdg~~Lasgs~------------Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasg 510 (732)
....|.|.++|.+.++-.. .+.|..++..+++....+... ...++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4678999999987763321 125777777778877666543 3578999999999988776
No 396
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.88 E-value=31 Score=42.43 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec
Q 004737 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 489 (732)
Q Consensus 451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 489 (732)
..|.+++..++..++++-+.|++++||++.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 456677778888999999999999999999999987753
No 397
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.54 E-value=1.3e+02 Score=36.72 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737 665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698 (732)
Q Consensus 665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~ 698 (732)
.+.+++..++..++++.+.|++++||++.++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 4455667788899999999999999999999877
No 398
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.77 E-value=7.5e+02 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 576 (732)
Q Consensus 537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~ 576 (732)
.|.++.+. ..++++-+.|+++|+||++++.++.....
T Consensus 223 ~Is~~~~~---~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH---ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET---TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC---CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35555553 35667888999999999999999988776
No 399
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=24.99 E-value=3e+02 Score=22.97 Aligned_cols=25 Identities=8% Similarity=0.341 Sum_probs=15.3
Q ss_pred EEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737 624 SVCWNTSGEYLASVSDELVRVWSIGS 649 (732)
Q Consensus 624 sla~spdg~~LasgsDg~I~IWDl~t 649 (732)
.+.+..+|.+++...++. .+|...+
T Consensus 53 ~l~l~~dGNLvl~~~~~~-~~W~S~t 77 (109)
T 3dzw_A 53 HLSMQSDGNLVVYSPRNN-PIWASNT 77 (109)
T ss_dssp EEEECTTSCEEEECTTSC-EEEECCC
T ss_pred EEEEeCCCCEEEECCCCC-EEEECCC
Confidence 466777887776544443 4776543
No 400
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=24.12 E-value=7.8e+02 Score=27.46 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=79.4
Q ss_pred CCcceEEEEEcCCCCcEEEEEeCCCc----------------------------EEEEECCCCeeeeEEecc---CCe--
Q 004737 534 HSTTVMSLDFHPSKEDLLCSCDNNSE----------------------------IRYWSINNGSCAGVFKCQ---SGA-- 580 (732)
Q Consensus 534 h~~~V~sl~fspdg~~llaSgs~Dg~----------------------------I~iWDl~t~~~i~~~~~~---~~i-- 580 (732)
|...+...+|.-||..-++....+|+ |.++|=.+|+.+..+... ..+
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 44556666777776655555544443 788888888888776542 111
Q ss_pred -------------eEEEE-eCCCCEEEEEE---cCCeEEEEECCCCeEEEEE--cCCC-----------CCEEEEEEeCC
Q 004737 581 -------------TQMRF-QPRLGRILAAA---IENYISILDVETQVCRLKL--QGHK-----------NQVHSVCWNTS 630 (732)
Q Consensus 581 -------------~~v~~-sp~g~~ll~~s---~dg~I~IwDl~t~~~i~~l--~~h~-----------~~V~sla~spd 630 (732)
.++++ .-+...++++- ....|..||.+.++....+ .... ..+.-..+.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 12222 11222333332 1235888998887654433 2210 12233333344
Q ss_pred CC-EEEEEe-----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCC----eEEEEECCCCeEE
Q 004737 631 GE-YLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYE----TLELWNMTENKTL 698 (732)
Q Consensus 631 g~-~Lasgs-----Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg--~~L~sgs~dg----~I~IwDl~t~~~~ 698 (732)
|+ -|+.++ ||+ .+|.... .|...++...|.|+. ..++.+.+++ ...+.|..+++.+
T Consensus 337 G~dEIv~Gs~~iD~dG~-~L~st~~-----------gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGK-GMYSTGL-----------GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSCEEEETTEEECTTSC-EEEECSC-----------CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCceEEEeeeEECCCCC-EeeeCCC-----------CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 43 222221 333 2555422 466666777777763 3455555541 3556788888776
No 401
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=23.13 E-value=7e+02 Score=26.53 Aligned_cols=191 Identities=9% Similarity=0.016 Sum_probs=93.9
Q ss_pred CceEEEEEcCCCCeEEEEeCCCeEEEEecC---CC-------C--c--eeEEeec-CCcceEEEEEcCCCCcEEEEEeCC
Q 004737 493 QWITDVRFSPSLSRLATSSADRTVRVWDTE---NP-------D--Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 557 (732)
Q Consensus 493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s~-------~--~--~~~~l~~-h~~~V~sl~fspdg~~llaSgs~D 557 (732)
..|..|+... ...+.-..||.|..|-.. .+ . . ....+.. ....|..|+.-. ...+.-..+
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETT
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCC
Confidence 4566666643 345555678999999751 00 0 0 0011111 122466666542 334455678
Q ss_pred CcEEEEECCCCeee--------------eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eE
Q 004737 558 SEIRYWSINNGSCA--------------GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VC 611 (732)
Q Consensus 558 g~I~iWDl~t~~~i--------------~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~------------~~ 611 (732)
|.|+.|-....-.+ ........|..++. ...+.++...+|.|+.|=.... ..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999976432110 00000123444443 3456777778899999954320 11
Q ss_pred E---EEEcC-CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC-c------------------eeE-EEeecCC-Cce
Q 004737 612 R---LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-G------------------ECI-HELSCTG-NKF 666 (732)
Q Consensus 612 i---~~l~~-h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~-~------------------~~i-~~~~~~~-~~I 666 (732)
. ..+.. ....|..|+.... ..++...||.|+.|=...... . ..+ ....... ..|
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v 379 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEH-HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF 379 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSS-EEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCE
T ss_pred eeccccccccCCccEEEEEeCCC-eEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCce
Confidence 1 11111 2245666665432 223334488888886533110 0 001 1111111 144
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737 667 HSCVFHPTFPSLLVIGCYETLELWNMT 693 (732)
Q Consensus 667 ~sl~fspdg~~L~sgs~dg~I~IwDl~ 693 (732)
..++. ...+.++...++.|+.|-..
T Consensus 380 ~~Ia~--G~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAA--GSHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEEEe--CCCeEEEEeCCCcEEEeeCC
Confidence 44443 34456777889999999654
No 402
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.10 E-value=1.1e+02 Score=25.99 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=14.0
Q ss_pred EEEEeCCCCEEEEEeCCeEEEEEC
Q 004737 624 SVCWNTSGEYLASVSDELVRVWSI 647 (732)
Q Consensus 624 sla~spdg~~LasgsDg~I~IWDl 647 (732)
.+.+..+|.+++...++.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456667777666544444446654
No 403
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=22.02 E-value=7.3e+02 Score=26.36 Aligned_cols=184 Identities=15% Similarity=0.105 Sum_probs=90.9
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCee----------e--eEEeccC--CeeEEEEeCCCCEEEEEEcC
Q 004737 536 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSC----------A--GVFKCQS--GATQMRFQPRLGRILAAAIE 598 (732)
Q Consensus 536 ~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~---t~~~----------i--~~~~~~~--~i~~v~~sp~g~~ll~~s~d 598 (732)
..|..|+... ...+.-..+|.|+.|-.. .+.+ . ..+..-. .|..++. ...+.++...+
T Consensus 148 ~~i~~va~G~---~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD---NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS---SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETT
T ss_pred CcEEEEEccC---CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCC
Confidence 4566666542 333345668999999751 1111 0 0111111 2444444 34677788889
Q ss_pred CeEEEEECCCC-e--------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC------c---e
Q 004737 599 NYISILDVETQ-V--------------CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G---E 654 (732)
Q Consensus 599 g~I~IwDl~t~-~--------------~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~------~---~ 654 (732)
|.|+.|-.... . ....+ ....|..|+... ...++...+|.|+.|-...... . .
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G~-~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASGE-NHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEECS-SEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecCC-CeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 99999965421 0 00011 114566666532 2233334488888886543110 0 0
Q ss_pred eE---EEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--------------------CeEE-----EEccCCC
Q 004737 655 CI---HELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--------------------NKTL-----TLSAHDK 705 (732)
Q Consensus 655 ~i---~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t--------------------~~~~-----~~~~h~~ 705 (732)
.+ ..+.. ....|..++. ...+.++...+|.|+.|-... +... .......
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~--G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~ 377 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAA--GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEE--CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC
T ss_pred eeeccccccccCCccEEEEEe--CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC
Confidence 11 11111 1234554444 334456667788888886422 1111 1111112
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737 706 LVSSLAASTVNGMVASASHDKCVKIW 731 (732)
Q Consensus 706 ~V~sla~spdg~~LaSgs~DG~I~IW 731 (732)
.|..|+.. ....+.-..||.|+.|
T Consensus 378 ~v~~Ia~G--~~hs~al~~~G~vy~w 401 (473)
T 3of7_A 378 KFKSVAAG--SHHSVAVAQNGIAYSW 401 (473)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEeCCCcEEEe
Confidence 56666654 3344455788888888
No 404
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=20.23 E-value=4.1e+02 Score=22.67 Aligned_cols=24 Identities=13% Similarity=0.360 Sum_probs=14.7
Q ss_pred EEEEeCCCCEEEEEeCCeEEEEECC
Q 004737 624 SVCWNTSGEYLASVSDELVRVWSIG 648 (732)
Q Consensus 624 sla~spdg~~LasgsDg~I~IWDl~ 648 (732)
.+.+..+|.+++...++. .+|...
T Consensus 64 ~l~l~~dGNLVl~d~~~~-~lW~S~ 87 (119)
T 1b2p_A 64 RAVLQPDGVLVVITNENV-TVWQSP 87 (119)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECS
T ss_pred EEEEccCCEEEEEeCCCc-EEEcCC
Confidence 466677787766544444 477654
Done!