Query 004738
Match_columns 732
No_of_seqs 403 out of 2142
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2310 DNA repair exonuclease 100.0 1E-137 2E-142 1124.7 45.5 572 9-619 10-594 (646)
2 TIGR00583 mre11 DNA repair pro 100.0 2.1E-91 4.5E-96 768.6 38.9 386 10-404 1-404 (405)
3 COG0420 SbcD DNA repair exonuc 100.0 7.8E-34 1.7E-38 311.5 26.3 262 13-324 1-273 (390)
4 PRK10966 exonuclease subunit S 100.0 3.6E-32 7.9E-37 300.8 30.4 315 13-402 1-346 (407)
5 PHA02546 47 endonuclease subun 100.0 3.9E-30 8.5E-35 278.5 31.6 232 13-320 1-242 (340)
6 PF04152 Mre11_DNA_bind: Mre11 100.0 1.2E-32 2.5E-37 272.8 10.4 154 302-455 1-175 (175)
7 TIGR00619 sbcd exonuclease Sbc 100.0 1.1E-27 2.4E-32 249.6 18.8 227 13-291 1-253 (253)
8 cd00840 MPP_Mre11_N Mre11 nucl 99.9 5.7E-26 1.2E-30 227.4 20.0 215 14-283 1-223 (223)
9 cd07385 MPP_YkuE_C Bacillus su 99.8 3.2E-18 7E-23 172.5 17.1 169 12-260 1-169 (223)
10 PRK11340 phosphodiesterase Yae 99.7 4.6E-16 9.9E-21 163.9 17.5 171 9-260 46-217 (271)
11 PRK11148 cyclic 3',5'-adenosin 99.6 2E-14 4.2E-19 151.3 18.1 87 8-131 10-98 (275)
12 PF12850 Metallophos_2: Calcin 99.6 3.7E-15 7.9E-20 141.1 6.3 75 217-299 80-155 (156)
13 cd07402 MPP_GpdQ Enterobacter 99.6 1.9E-14 4E-19 146.8 11.3 197 14-277 1-210 (240)
14 cd07400 MPP_YydB Bacillus subt 99.5 4.1E-14 9E-19 133.7 12.1 80 15-130 1-80 (144)
15 cd07395 MPP_CSTP1 Homo sapiens 99.5 4.6E-13 1E-17 139.3 20.9 238 10-308 2-261 (262)
16 PRK09453 phosphodiesterase; Pr 99.5 1.3E-12 2.7E-17 129.6 17.8 172 13-315 1-176 (182)
17 TIGR00040 yfcE phosphoesterase 99.5 7E-13 1.5E-17 128.2 14.2 52 244-303 105-156 (158)
18 cd00841 MPP_YfcE Escherichia c 99.4 1.3E-12 2.7E-17 125.2 14.4 80 218-306 75-154 (155)
19 cd07394 MPP_Vps29 Homo sapiens 99.4 4.5E-12 9.8E-17 126.2 17.8 63 244-311 105-168 (178)
20 PF00149 Metallophos: Calcineu 99.4 9.2E-14 2E-18 126.7 5.2 80 13-133 1-80 (200)
21 cd07388 MPP_Tt1561 Thermus the 99.4 4.9E-12 1.1E-16 130.5 17.8 201 11-301 3-220 (224)
22 PRK05340 UDP-2,3-diacylglucosa 99.4 3.2E-12 6.9E-17 132.3 15.9 81 13-132 1-84 (241)
23 cd07396 MPP_Nbla03831 Homo sap 99.4 5.2E-12 1.1E-16 132.6 17.6 86 13-133 1-88 (267)
24 cd07392 MPP_PAE1087 Pyrobaculu 99.4 1.2E-12 2.6E-17 127.7 10.4 176 15-275 1-188 (188)
25 cd07401 MPP_TMEM62_N Homo sapi 99.4 9.9E-12 2.1E-16 130.1 16.0 214 15-278 2-233 (256)
26 cd07393 MPP_DR1119 Deinococcus 99.4 7.4E-12 1.6E-16 129.1 14.8 79 15-131 1-84 (232)
27 cd07383 MPP_Dcr2 Saccharomyces 99.4 6.5E-12 1.4E-16 125.9 13.2 58 11-68 1-58 (199)
28 COG2129 Predicted phosphoester 99.4 2.6E-11 5.6E-16 123.9 17.4 203 11-307 2-224 (226)
29 cd07399 MPP_YvnB Bacillus subt 99.3 9.6E-11 2.1E-15 119.5 16.8 80 13-129 1-80 (214)
30 TIGR03729 acc_ester putative p 99.3 2.4E-11 5.2E-16 125.4 11.8 75 14-132 1-75 (239)
31 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 4.6E-11 1E-15 123.0 11.6 78 15-132 1-82 (231)
32 COG0622 Predicted phosphoester 99.2 2.6E-10 5.7E-15 113.4 14.6 59 244-310 108-166 (172)
33 COG1408 Predicted phosphohydro 99.1 3.3E-10 7.2E-15 120.8 13.4 94 8-147 40-134 (284)
34 cd00839 MPP_PAPs purple acid p 99.1 1.4E-09 3E-14 114.6 17.5 81 10-133 2-83 (294)
35 cd07378 MPP_ACP5 Homo sapiens 99.1 3.6E-09 7.7E-14 110.8 18.6 105 200-309 152-275 (277)
36 cd00845 MPP_UshA_N_like Escher 99.1 1.1E-09 2.4E-14 113.1 14.5 212 13-276 1-223 (252)
37 cd07397 MPP_DevT Myxococcus xa 99.1 1.2E-09 2.6E-14 113.8 13.5 65 13-133 1-65 (238)
38 COG1409 Icc Predicted phosphoh 99.1 8.5E-10 1.8E-14 114.3 12.1 81 13-134 1-81 (301)
39 PRK04036 DNA polymerase II sma 99.0 1.2E-08 2.5E-13 117.0 20.4 50 8-64 239-297 (504)
40 cd07386 MPP_DNA_pol_II_small_a 99.0 2.5E-09 5.5E-14 110.8 12.4 46 16-65 2-49 (243)
41 cd07379 MPP_239FB Homo sapiens 99.0 2E-09 4.4E-14 101.5 9.7 47 14-81 1-47 (135)
42 cd07404 MPP_MS158 Microscilla 99.0 1.9E-09 4E-14 104.8 9.6 42 15-67 1-42 (166)
43 cd07391 MPP_PF1019 Pyrococcus 99.0 1E-09 2.3E-14 108.0 7.6 84 16-132 1-89 (172)
44 cd07410 MPP_CpdB_N Escherichia 99.0 1.1E-08 2.3E-13 108.1 14.9 213 13-276 1-246 (277)
45 PF14582 Metallophos_3: Metall 99.0 3.4E-09 7.4E-14 108.7 10.5 228 12-305 5-253 (255)
46 cd07390 MPP_AQ1575 Aquifex aeo 98.9 6.5E-09 1.4E-13 102.1 10.3 52 16-67 2-58 (168)
47 cd07398 MPP_YbbF-LpxH Escheric 98.9 3.2E-09 6.8E-14 106.8 7.5 43 16-64 1-43 (217)
48 cd07406 MPP_CG11883_N Drosophi 98.9 1.9E-08 4.2E-13 105.5 12.6 211 13-276 1-222 (257)
49 TIGR00024 SbcD_rel_arch putati 98.8 8.1E-09 1.8E-13 106.8 8.3 83 13-131 15-102 (225)
50 cd07411 MPP_SoxB_N Thermus the 98.8 5.2E-08 1.1E-12 102.4 13.4 213 13-276 1-237 (264)
51 cd07408 MPP_SA0022_N Staphyloc 98.7 2.9E-07 6.2E-12 96.5 16.6 218 13-276 1-231 (257)
52 cd07412 MPP_YhcR_N Bacillus su 98.7 1.8E-07 3.9E-12 99.9 15.0 52 13-65 1-56 (288)
53 cd00838 MPP_superfamily metall 98.7 7.3E-08 1.6E-12 86.5 10.2 69 16-129 1-69 (131)
54 cd08165 MPP_MPPE1 human MPPE1 98.6 6.5E-08 1.4E-12 94.5 8.1 86 16-131 1-89 (156)
55 cd07409 MPP_CD73_N CD73 ecto-5 98.6 3.8E-07 8.2E-12 97.0 13.9 199 13-258 1-219 (281)
56 PLN02533 probable purple acid 98.6 6.6E-07 1.4E-11 100.8 14.2 75 10-131 137-211 (427)
57 PTZ00422 glideosome-associated 98.5 6.4E-06 1.4E-10 91.7 20.6 98 217-321 213-328 (394)
58 COG2908 Uncharacterized protei 98.5 1.5E-07 3.3E-12 97.4 6.4 79 16-133 1-82 (237)
59 cd07384 MPP_Cdc1_like Saccharo 98.5 4.1E-07 8.9E-12 90.2 8.4 91 16-132 1-101 (171)
60 cd07403 MPP_TTHA0053 Thermus t 98.5 5.1E-07 1.1E-11 85.4 8.5 33 16-62 1-33 (129)
61 cd08163 MPP_Cdc1 Saccharomyces 98.5 1.1E-06 2.4E-11 92.7 11.8 57 48-133 42-99 (257)
62 KOG1432 Predicted DNA repair e 98.5 1.9E-06 4.1E-11 93.0 13.2 105 6-143 47-159 (379)
63 KOG2679 Purple (tartrate-resis 98.4 3.2E-06 7E-11 88.9 14.4 243 7-310 38-318 (336)
64 cd07405 MPP_UshA_N Escherichia 98.4 9.2E-06 2E-10 86.8 18.0 199 13-259 1-223 (285)
65 PRK09419 bifunctional 2',3'-cy 98.4 4.2E-06 9.1E-11 104.8 15.6 208 9-276 657-897 (1163)
66 cd08164 MPP_Ted1 Saccharomyces 98.3 7.8E-06 1.7E-10 83.0 13.8 25 48-72 41-65 (193)
67 COG1407 Predicted ICC-like pho 98.2 2.2E-06 4.7E-11 89.2 7.6 57 12-68 19-80 (235)
68 cd00842 MPP_ASMase acid sphing 98.2 4.8E-06 1E-10 88.6 9.1 34 34-67 49-84 (296)
69 PHA02239 putative protein phos 98.1 8.7E-06 1.9E-10 85.0 8.4 53 13-77 1-55 (235)
70 COG0737 UshA 5'-nucleotidase/2 98.0 0.00038 8.2E-09 80.3 20.3 237 6-299 20-279 (517)
71 cd07407 MPP_YHR202W_N Saccharo 98.0 0.0001 2.2E-09 79.0 14.0 56 216-276 187-247 (282)
72 PRK09558 ushA bifunctional UDP 98.0 8E-05 1.7E-09 86.5 14.0 206 7-258 29-258 (551)
73 COG1311 HYS2 Archaeal DNA poly 97.9 2.5E-05 5.4E-10 87.9 9.0 56 5-64 218-275 (481)
74 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.9 0.0001 2.2E-09 78.3 11.7 17 116-132 71-87 (262)
75 cd08162 MPP_PhoA_N Synechococc 97.9 0.00025 5.4E-09 77.1 14.8 47 13-65 1-52 (313)
76 PRK00166 apaH diadenosine tetr 97.8 2.9E-05 6.3E-10 82.9 7.1 68 13-131 1-69 (275)
77 PRK09418 bifunctional 2',3'-cy 97.8 0.00026 5.7E-09 85.3 15.2 56 10-65 37-97 (780)
78 cd08166 MPP_Cdc1_like_1 unchar 97.8 7.2E-05 1.6E-09 76.2 8.9 57 46-131 37-93 (195)
79 cd07425 MPP_Shelphs Shewanella 97.8 4.4E-05 9.6E-10 78.1 7.2 72 16-131 1-80 (208)
80 PRK11907 bifunctional 2',3'-cy 97.8 0.0011 2.4E-08 80.2 19.7 56 10-65 113-173 (814)
81 PRK09419 bifunctional 2',3'-cy 97.8 0.00038 8.2E-09 87.6 16.4 55 11-65 40-99 (1163)
82 COG4186 Predicted phosphoester 97.8 0.00029 6.3E-09 69.1 11.8 55 11-66 2-60 (186)
83 PRK09420 cpdB bifunctional 2', 97.8 0.0024 5.1E-08 76.0 21.9 56 10-65 23-83 (649)
84 TIGR01530 nadN NAD pyrophospha 97.7 0.00028 6.1E-09 82.1 13.7 53 13-65 1-63 (550)
85 cd07387 MPP_PolD2_C PolD2 (DNA 97.7 0.0022 4.7E-08 68.2 18.1 46 14-66 1-57 (257)
86 TIGR01390 CycNucDiestase 2',3' 97.7 0.00094 2E-08 79.0 16.7 54 12-65 2-60 (626)
87 KOG3662 Cell division control 97.6 0.00032 7E-09 78.3 11.0 99 5-135 41-148 (410)
88 cd07423 MPP_PrpE Bacillus subt 97.6 0.00012 2.7E-09 75.8 6.6 54 13-82 1-64 (234)
89 cd07424 MPP_PrpA_PrpB PrpA and 97.6 0.00014 3.1E-09 73.8 6.7 43 13-67 1-44 (207)
90 cd00144 MPP_PPP_family phospho 97.4 0.00021 4.6E-09 72.5 6.3 68 16-131 1-68 (225)
91 TIGR03767 P_acnes_RR metalloph 97.4 0.0032 6.9E-08 71.9 15.0 105 200-315 323-450 (496)
92 KOG1378 Purple acid phosphatas 97.3 0.0017 3.7E-08 73.3 12.3 189 8-258 143-345 (452)
93 cd07422 MPP_ApaH Escherichia c 97.3 0.00041 8.8E-09 73.6 6.6 66 15-131 1-67 (257)
94 PRK11439 pphA serine/threonine 97.2 0.00039 8.4E-09 71.5 5.5 53 12-80 16-69 (218)
95 PRK13625 bis(5'-nucleosyl)-tet 97.2 0.00068 1.5E-08 71.0 6.8 51 13-75 1-60 (245)
96 PRK09968 serine/threonine-spec 97.2 0.00057 1.2E-08 70.4 6.0 44 13-68 15-59 (218)
97 cd07382 MPP_DR1281 Deinococcus 97.0 0.01 2.2E-07 63.1 13.4 190 14-276 1-197 (255)
98 TIGR00668 apaH bis(5'-nucleosy 96.9 0.0016 3.5E-08 69.8 6.8 53 13-81 1-54 (279)
99 COG1768 Predicted phosphohydro 96.7 0.0082 1.8E-07 60.5 9.3 42 216-257 157-199 (230)
100 cd07413 MPP_PA3087 Pseudomonas 96.7 0.0029 6.3E-08 65.4 6.0 50 16-81 2-59 (222)
101 cd07421 MPP_Rhilphs Rhilph pho 96.5 0.0073 1.6E-07 65.4 8.1 52 14-81 3-60 (304)
102 smart00156 PP2Ac Protein phosp 96.2 0.011 2.4E-07 63.2 7.2 51 13-75 28-78 (271)
103 KOG3325 Membrane coat complex 96.2 0.01 2.2E-07 58.1 6.1 80 217-302 78-161 (183)
104 TIGR00282 metallophosphoestera 96.1 0.1 2.2E-06 56.0 13.6 182 13-266 1-190 (266)
105 KOG3770 Acid sphingomyelinase 96.0 0.026 5.6E-07 65.6 9.3 95 10-131 136-263 (577)
106 PF09587 PGA_cap: Bacterial ca 96.0 0.12 2.6E-06 54.1 13.7 137 116-259 73-230 (250)
107 cd07381 MPP_CapA CapA and rela 95.9 0.066 1.4E-06 55.5 11.2 133 117-258 76-220 (239)
108 PF04042 DNA_pol_E_B: DNA poly 95.8 0.0081 1.7E-07 60.8 3.9 47 15-68 1-48 (209)
109 cd07416 MPP_PP2B PP2B, metallo 95.7 0.025 5.5E-07 61.5 7.5 50 13-74 43-92 (305)
110 smart00854 PGA_cap Bacterial c 95.4 0.12 2.6E-06 53.8 10.7 132 117-258 72-218 (239)
111 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.2 0.035 7.6E-07 59.9 6.1 48 14-73 43-90 (285)
112 cd07414 MPP_PP1_PPKL PP1, PPKL 95.0 0.052 1.1E-06 58.8 6.8 49 13-73 50-98 (293)
113 PTZ00480 serine/threonine-prot 94.9 0.045 9.7E-07 60.1 6.2 47 14-72 60-106 (320)
114 PTZ00239 serine/threonine prot 94.1 0.098 2.1E-06 57.0 6.3 47 14-72 44-90 (303)
115 PTZ00244 serine/threonine-prot 93.9 0.095 2.1E-06 56.9 5.9 46 15-72 54-99 (294)
116 cd07418 MPP_PP7 PP7, metalloph 93.7 0.14 3E-06 57.4 6.9 48 13-72 66-114 (377)
117 cd07420 MPP_RdgC Drosophila me 93.5 0.16 3.5E-06 55.8 6.9 47 14-72 52-99 (321)
118 cd07417 MPP_PP5_C PP5, C-termi 93.5 0.14 3.1E-06 56.0 6.5 52 13-76 60-112 (316)
119 cd07380 MPP_CWF19_N Schizosacc 93.2 0.14 3.1E-06 50.3 5.2 46 48-129 23-68 (150)
120 cd07419 MPP_Bsu1_C Arabidopsis 92.9 0.25 5.4E-06 54.0 7.2 48 14-73 49-104 (311)
121 TIGR03768 RPA4764 metallophosp 92.2 0.58 1.3E-05 53.8 9.0 109 10-132 34-171 (492)
122 KOG2863 RNA lariat debranching 91.8 0.89 1.9E-05 50.5 9.5 23 110-132 67-89 (456)
123 KOG4419 5' nucleotidase [Nucle 85.3 2.5 5.4E-05 49.7 7.8 58 9-66 39-102 (602)
124 KOG2476 Uncharacterized conser 75.3 8.5 0.00018 44.3 7.5 94 13-155 6-100 (528)
125 PF06874 FBPase_2: Firmicute f 67.0 6.2 0.00014 46.9 4.3 38 41-82 174-211 (640)
126 KOG3947 Phosphoesterases [Gene 67.0 43 0.00093 36.6 10.1 43 7-67 56-98 (305)
127 PTZ00235 DNA polymerase epsilo 66.6 23 0.00049 38.8 8.1 47 10-64 25-76 (291)
128 TIGR01769 GGGP geranylgeranylg 63.8 25 0.00054 36.5 7.5 57 38-132 11-67 (205)
129 KOG3428 Small nuclear ribonucl 62.5 3.9 8.5E-05 38.2 1.3 14 584-597 95-108 (109)
130 PF09423 PhoD: PhoD-like phosp 61.1 9.8 0.00021 43.4 4.5 42 10-63 103-144 (453)
131 PF05918 API5: Apoptosis inhib 60.4 2.9 6.2E-05 49.3 0.0 15 38-52 59-73 (556)
132 PF12235 FXR1P_C: Fragile X-re 59.5 4 8.7E-05 40.5 0.8 19 584-602 47-65 (155)
133 PF01884 PcrB: PcrB family; I 46.9 40 0.00087 35.7 5.9 52 41-132 22-73 (230)
134 TIGR01768 GGGP-family geranylg 45.0 58 0.0013 34.4 6.6 54 40-132 16-69 (223)
135 PRK09982 universal stress prot 44.0 47 0.001 31.4 5.5 19 40-58 92-110 (142)
136 KOG0374 Serine/threonine speci 42.6 44 0.00095 37.2 5.6 73 14-133 60-133 (331)
137 COG1646 Predicted phosphate-bi 41.6 82 0.0018 33.6 7.0 55 40-132 30-84 (240)
138 COG3855 Fbp Uncharacterized pr 40.8 38 0.00083 39.3 4.8 36 43-82 182-217 (648)
139 KOG0372 Serine/threonine speci 39.4 55 0.0012 35.3 5.4 43 15-72 45-90 (303)
140 PF05918 API5: Apoptosis inhib 35.2 13 0.00027 44.1 0.0 9 522-530 458-466 (556)
141 KOG0373 Serine/threonine speci 35.1 83 0.0018 33.4 5.8 48 15-77 48-98 (306)
142 PF15231 VCX_VCY: Variable cha 34.8 29 0.00063 33.3 2.3 37 558-598 17-53 (147)
143 PF00072 Response_reg: Respons 33.6 1.4E+02 0.003 25.9 6.5 53 39-130 31-83 (112)
144 PRK15005 universal stress prot 33.6 94 0.002 28.8 5.6 20 39-58 95-114 (144)
145 PF07451 SpoVAD: Stage V sporu 33.0 54 0.0012 36.3 4.3 20 48-68 69-88 (329)
146 cd02812 PcrB_like PcrB_like pr 30.7 1.3E+02 0.0029 31.6 6.7 55 40-132 14-68 (219)
147 PRK10116 universal stress prot 30.4 1.3E+02 0.0027 27.9 5.9 19 40-58 91-109 (142)
148 PF07355 GRDB: Glycine/sarcosi 30.1 1.4E+02 0.0031 33.5 7.1 52 10-71 48-99 (349)
149 PRK04169 geranylgeranylglycery 28.7 1.3E+02 0.0029 31.9 6.3 50 43-132 24-74 (232)
150 PF00582 Usp: Universal stress 28.6 1.5E+02 0.0032 26.1 5.9 23 39-61 90-112 (140)
151 TIGR02667 moaB_proteo molybden 26.2 2.2E+02 0.0049 28.2 7.1 30 34-63 45-75 (163)
152 COG2248 Predicted hydrolase (m 25.8 81 0.0018 34.2 4.0 58 10-82 174-234 (304)
153 cd07389 MPP_PhoD Bacillus subt 25.5 1.9E+02 0.0042 29.3 6.7 20 116-135 87-106 (228)
154 cd07424 MPP_PrpA_PrpB PrpA and 25.0 55 0.0012 33.2 2.6 29 245-277 168-196 (207)
155 KOG1432 Predicted DNA repair e 24.8 1.1E+03 0.023 27.0 15.3 59 14-81 103-161 (379)
156 PRK09968 serine/threonine-spec 24.7 61 0.0013 33.5 2.9 30 245-278 179-208 (218)
157 TIGR03568 NeuC_NnaA UDP-N-acet 24.6 2.2E+02 0.0048 31.7 7.5 26 38-63 80-105 (365)
158 TIGR01319 glmL_fam conserved h 24.5 94 0.002 36.3 4.5 66 45-152 114-179 (463)
159 PF02350 Epimerase_2: UDP-N-ac 24.1 1.4E+02 0.003 33.2 5.7 25 38-62 54-78 (346)
160 TIGR01501 MthylAspMutase methy 23.1 2.8E+02 0.006 27.1 6.8 40 39-82 40-79 (134)
161 cd02071 MM_CoA_mut_B12_BD meth 23.0 4.4E+02 0.0096 24.5 8.1 39 39-81 38-76 (122)
162 TIGR00640 acid_CoA_mut_C methy 21.9 3.3E+02 0.0071 26.2 7.1 40 38-81 40-79 (132)
163 cd03786 GT1_UDP-GlcNAc_2-Epime 20.8 1.7E+02 0.0037 31.4 5.5 26 37-62 74-99 (363)
164 cd02067 B12-binding B12 bindin 20.5 3.4E+02 0.0075 24.7 6.8 39 39-81 38-76 (119)
165 PF10686 DUF2493: Protein of u 20.5 2.4E+02 0.0052 24.4 5.2 39 11-60 2-40 (71)
166 cd02072 Glm_B12_BD B12 binding 20.1 6.3E+02 0.014 24.5 8.6 40 39-82 38-77 (128)
No 1
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-137 Score=1124.66 Aligned_cols=572 Identities=51% Similarity=0.852 Sum_probs=519.8
Q ss_pred CCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCC
Q 004738 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (732)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p 88 (732)
-+++||||++||+||||.++|++|++|+|.||+|||.+|++++|||||++|||||+|+||+++|++|+++||+|||||+|
T Consensus 10 ~entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP 89 (646)
T KOG2310|consen 10 FENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKP 89 (646)
T ss_pred cccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeE
Q 004738 89 VQFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (732)
Q Consensus 89 ~~~e~lSd~~~~F~~-~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i 167 (732)
|+||+||||++||.+ .|++|||+|||+|++||||.||||||+|+|.+.+||+|||+.+|||||||++. ++++|.+
T Consensus 90 ~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~----~id~I~v 165 (646)
T KOG2310|consen 90 VQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVS----EIDKIDV 165 (646)
T ss_pred eeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhcccc----CcceEEE
Confidence 999999999999986 59999999999999999999999999999999999999999999999999963 6789999
Q ss_pred EEEEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCcCCC
Q 004738 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLD 247 (732)
Q Consensus 168 ~Pvll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~D 247 (732)
.|||++||.++|||||||+++|+||.++|.+ ++|.|++|+.. .++|||+|++|||+..|.+++++||+|+|.|||
T Consensus 166 sPiLlqKG~tklALYGLg~irDeRL~R~Fk~-~~V~f~rPe~~----e~dWFNllvlHQNr~~h~~tn~lpE~flp~F~D 240 (646)
T KOG2310|consen 166 SPILLQKGSTKLALYGLGSIRDERLYRMFKN-GKVTFLRPEEY----EDDWFNLLVLHQNRSKHRPTNFLPEQFLPDFLD 240 (646)
T ss_pred EeeeeccCceeEEEeeccccchHHHHHHHHh-CceEEecCccc----cccceeeEEEeecccCCCCcccCcHhHhhhhhh
Confidence 9999999999999999999999999999998 68999999864 379999999999999999999999999999999
Q ss_pred EEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEEECCCCCcEEEEEEEeccCCC
Q 004738 248 FVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEAD 327 (732)
Q Consensus 248 yVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~IpL~tvRpf~~~eI~L~~~~~ 327 (732)
+|+|||+|+|.|.|++++.++|+|+||||+++||+++||+.+|+|+||+|++++|.+++|||.|||||++.+|.|.+.++
T Consensus 241 lviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~~~ 320 (646)
T KOG2310|consen 241 LVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADHPD 320 (646)
T ss_pred heeeccccccccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----CCCCCHhHHHHHHHHHHHHHHHHhhhhcccc-ccCCCCeEEEEEEeec-ccccChhhhhhHHhhcccCccceEEEe
Q 004738 328 ----IDPDDQNSILEHLDKVVRNLIERSSKKTVNR-SELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDILIFS 401 (732)
Q Consensus 328 ----~~~~~~~ei~~~l~~~Ve~li~~a~~~~~~~-~~~~~PLiRLrVd~sg-~~~~n~~rfgq~f~g~VANp~dil~f~ 401 (732)
+.|.....+.+++.++|++||+.|.+++..+ .++++|||||||+|+| |+++||+|||++|+|+||||.|||+|+
T Consensus 321 ~~~~i~p~~~~~i~~~~~e~veemI~~A~~q~~~~~~~p~lPLIRLrVdYsg~~~~~n~~RFs~rfvgrVAN~~Dvv~f~ 400 (646)
T KOG2310|consen 321 ILNPIRPKVTDGILSFLIEKVEEMIETAEAQRLGRSGQPELPLIRLRVDYSGDFEPFNPQRFSQRFVGRVANPQDVVQFS 400 (646)
T ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEecCCccccCHHHHhHhhhhcccChhheEEEe
Confidence 7888888899999999999999998776554 3699999999999999 999999999999999999999999999
Q ss_pred ecccccccccccccccccCccccchhhHHHHHHhh----ccccccccCCcHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 004738 402 KSSKKSKAEAKIDDFERLRPEELNQQNIEALVAEN----NLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQETRH 477 (732)
Q Consensus 402 k~~~~~~~~~~~~~~~~~~~~~l~~~~i~~lv~e~----~~~l~~l~~~~l~~av~~fV~k~d~~ai~~~v~~~~~~~~~ 477 (732)
|++++.+++...++.+.++++++++.+|+.||.++ +.+|.+|++.+|++||++||+|+|++||++||+++|++++
T Consensus 401 k~~kk~rte~~~~~t~~~~~~e~~~~~ve~Lvn~y~~~~n~ql~lL~~~gl~eal~~fv~kdek~A~~~~V~~~iek~~- 479 (646)
T KOG2310|consen 401 KKRKKTRTEEVNNGTEALRPEEGNQLRVETLVNQYTAESNVQLSLLPERGLGEALQEFVDKDEKDAFEECVKYQIEKVQ- 479 (646)
T ss_pred ecccccccccccccchhccccccchhhHHHHHhhhhhccccceeeeccccHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-
Confidence 98877777666667778889999999999999554 7899999999999999999999999999999999999884
Q ss_pred HHhhcCCccccchhhHHHHhHHhHHHHHhh--hccCCCCCCCCCcccccccccccccccCCccceeccCccccccccCCc
Q 004738 478 KIAKDSDTAKFEEEDIILKVGESLEERLKE--RSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDDEDTTQISDTK 555 (732)
Q Consensus 478 ~l~~~~~~~~~~~~d~i~~~~~~~~er~~e--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~sd~~~~~~~~~~~ 555 (732)
.+.+++.+.++++++.|.|+. +..+..+++++. +.+..+.+++-+ +..+|++|.+++.|+.-
T Consensus 480 ---------~~~~~~~~~~~~E~i~~~lk~~~r~~~~~~t~~~e-~~e~~e~~~~~~------~~~~s~~e~~~~~s~~~ 543 (646)
T KOG2310|consen 480 ---------RFNEEDHIDKVEENIDEELKRFKRATRKRGTNPKE-DDETREALTEGS------ALRSSNEESASGFSSDL 543 (646)
T ss_pred ---------ccchhhhcchHHHHHHHHHHHHHhhhccCCCCcCc-hhhhhhhhcccc------cccccccccccccCccc
Confidence 345788899999999999998 777777777743 355555554432 26889999999999888
Q ss_pred ccccCCcccccccccccCccccCCCCCccCCCCCCCCCCCCCCCCCccccccCcccccccchhh
Q 004738 556 SATRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRGANNLKQTTLDASLGFRQSQRS 619 (732)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (732)
+-+.++-.||.+ .-++.. +..++|||||||++..++++++.|+||+..++.
T Consensus 544 ~~s~~~~~S~~~-------~~~~~s------~~pt~~rgr~r~~~~~r~~~~~ss~g~s~~~~~ 594 (646)
T KOG2310|consen 544 LMSHEELGSSIA-------NDSSVS------AAPTKGRGRGRGRRGKRGQNSDSSLGFSRTRAD 594 (646)
T ss_pred ccccchhhhhhc-------cccchh------cCCCcccccccccccccCCccccccchhhhccc
Confidence 888877666655 222333 344555666666688889999999999998665
No 2
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=100.00 E-value=2.1e-91 Score=768.58 Aligned_cols=386 Identities=49% Similarity=0.889 Sum_probs=356.7
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCc
Q 004738 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~ 89 (732)
+++|||||+||||||+.+.++.|++|++.+|++|+++|++++||+||++|||||.+.||++++++++++|++|||||+||
T Consensus 1 ~~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~ 80 (405)
T TIGR00583 1 EDTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPC 80 (405)
T ss_pred CCceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEE
Q 004738 90 QFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (732)
Q Consensus 90 ~~e~lSd~~~~F~~-~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~ 168 (732)
+|++|||++.+|.. .|+.|||+|||++++||||+||||||+|.+.+.++++++|+.+|++++||+.. ..+++.+.
T Consensus 81 ~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~----~~~~i~~~ 156 (405)
T TIGR00583 81 ELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVP----EIDNIIVS 156 (405)
T ss_pred chhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEecccc----ccccceee
Confidence 99999999999984 89999999999999999999999999999887789999999999999999853 35678899
Q ss_pred EEEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCcCCCE
Q 004738 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (732)
Q Consensus 169 Pvll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~Dy 248 (732)
|+++++|.++++|||+||++++++.++|.+ .++.+++|... ..+|||||++||++.++.+.+++++.+++.+|||
T Consensus 157 Pvll~kg~~~valyGl~~~~d~rl~~~f~~-~~v~~~~p~~~----~~~~fnIlv~Hq~~~~~~~~~~ipe~llp~~fDY 231 (405)
T TIGR00583 157 PILLQKGETKLALYGISNVRDERLVRTFKD-NKVSFLRPNAG----AEDWFNLLVLHQNHAAHTSTSFLPESFIPDFFDL 231 (405)
T ss_pred eEEEecCCeeEEEecCCCCCHHHHHHHhhc-cchhhhccccC----CCCceEEEEeCceecCCCCcccCchhhhhccCcE
Confidence 999999999999999999999999999987 47888887632 3589999999999988887788999999999999
Q ss_pred EEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEEECCCCCcEEEEEEEeccCCCC
Q 004738 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADI 328 (732)
Q Consensus 249 Va~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~IpL~tvRpf~~~eI~L~~~~~~ 328 (732)
|||||+|+|++.|+..+..+++|+||||+++|||+++|..+|||+||+|+++.+++++|||.++|||++.+++|++..++
T Consensus 232 ValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~~~~~ 311 (405)
T TIGR00583 232 VIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDKVPGS 311 (405)
T ss_pred EEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhhcccc
Confidence 99999999999888777667899999999999999999999999999999989999999999999999999999987655
Q ss_pred CC----CCHhHHHHHHHHHHHHHHHHhhhhccc---------cccCCCCeEEEEEEeec----ccccChhhhhhHHhhcc
Q 004738 329 DP----DDQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYSG----FMTINPQRFGQKYVGKV 391 (732)
Q Consensus 329 ~~----~~~~ei~~~l~~~Ve~li~~a~~~~~~---------~~~~~~PLiRLrVd~sg----~~~~n~~rfgq~f~g~V 391 (732)
.+ +++.+|.++|.++|++||++|++++.. ..++++|||||||+||| |+++||+||||+|+|+|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~~~~n~~rf~~~~~~~v 391 (405)
T TIGR00583 312 RPILKTDNKKETDKRLIDEVEEMINEANAEWKAKRADGEGDEPREPPLPLIRLKVDYTGPWLNYQVENPKRFSNRFVGRV 391 (405)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCceEEEEEEecCCCCCccccChhHHhhhhcccc
Confidence 43 557889999999999999999876532 34689999999999996 89999999999999999
Q ss_pred cCccceEEEeecc
Q 004738 392 ANPQDILIFSKSS 404 (732)
Q Consensus 392 ANp~dil~f~k~~ 404 (732)
|||+|||+|||++
T Consensus 392 an~~d~~~~~~~~ 404 (405)
T TIGR00583 392 ANANDVVQFYKNN 404 (405)
T ss_pred cChhHeEEEEecC
Confidence 9999999999854
No 3
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.8e-34 Score=311.48 Aligned_cols=262 Identities=32% Similarity=0.452 Sum_probs=186.6
Q ss_pred cEEEEEcCCCCC-CCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 13 mRILh~SD~HLG-~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
|||||+|||||| +..+.+.|.+|.+.+|+++++.|++++|||||+||||||.++|+.+++..+++.|+++|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~-------- 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK-------- 72 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc--------
Confidence 899999999999 56677889999999999999999999999999999999999999999999999999986
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEE
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvl 171 (732)
..+||||+|+||||.+.+....+++.++...+++.+.+...... ....+...|.+
T Consensus 73 ------------------------~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 127 (390)
T COG0420 73 ------------------------DAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEI-RPPEIVAAPWL 127 (390)
T ss_pred ------------------------cCCCcEEEecCCCCchhccccccchHHHHcCCceeecccceecc-cccchhcceee
Confidence 46899999999999999887777666677667666555200000 00111145666
Q ss_pred EeeCCeeEE-EEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCC----CCCcccc-c--cccCC
Q 004738 172 IRKGSTAVA-LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK----TNPKNAI-N--EHFLP 243 (732)
Q Consensus 172 l~kG~t~va-LyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~----~~~~~~I-~--e~lLp 243 (732)
+......+. ++|+.+........... ....... .....++|+++|+.... ..+...+ + -+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (390)
T COG0420 128 IPGPDPDVVFFLGLNGLEKEQFELLLH-----KGLLSAL----DPDDDPSILVLHQSIDALTSGAERDLALGTVDLSLLP 198 (390)
T ss_pred eccCCCcceeeeccCCchHHHHHHHHh-----HhHHhhc----CCccCceeeehhhhhcccccCCccceEEccccccccc
Confidence 665455555 88888776554433220 0010110 01157999999997441 1111111 1 25667
Q ss_pred cC-CCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCe-eEEEEEECCCCCcEEEEEEE
Q 004738 244 RF-LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTSVRPFEYTEII 321 (732)
Q Consensus 244 ~~-~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~-~~ve~IpL~tvRpf~~~eI~ 321 (732)
.. |||||+||+|.++.. ......|.||||++.++|.| +...|++.+|+++++. +.++.+++ +++...++.
T Consensus 199 ~~~~~YvALGHiH~~~~~----~~~~~~i~y~GS~~~~~f~E-~~~~k~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~ 270 (390)
T COG0420 199 KGGFDYVALGHIHKRQVI----PKEDPPIVYPGSPERYSFGE-EGERKGVVLVEFSGGKLWRFEELFV---PLFERLEVD 270 (390)
T ss_pred CCCcceEEcCCccccccc----CCCCCceecCCCceecchhH-cCCcccEEEEEecCCceeeeccccc---cccCceEEE
Confidence 66 999999999998654 33334688999999999986 4678999999999884 44444444 445544554
Q ss_pred ecc
Q 004738 322 LKD 324 (732)
Q Consensus 322 L~~ 324 (732)
...
T Consensus 271 ~~~ 273 (390)
T COG0420 271 VLN 273 (390)
T ss_pred Eee
Confidence 444
No 4
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=100.00 E-value=3.6e-32 Score=300.80 Aligned_cols=315 Identities=19% Similarity=0.265 Sum_probs=204.5
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
|||||+||||||....+..+..+....++++++++.+++||+||++|||||...|+........++|.++.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~--------- 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ--------- 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH---------
Confidence 89999999999987655555566666679999999999999999999999998887654322233333321
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEEE
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILI 172 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvll 172 (732)
..++|||+|+||||.+.... .+.++|...| |++++... ......|+.+
T Consensus 72 -----------------------~~~~~v~~I~GNHD~~~~l~--~~~~~l~~~g-i~vl~~~~------~~~~~~~v~l 119 (407)
T PRK10966 72 -----------------------QTGCQLVVLAGNHDSVATLN--ESRDLLAFLN-TTVIASAS------DDLGHQVIIL 119 (407)
T ss_pred -----------------------hcCCcEEEEcCCCCChhhhh--hHHHHHHHCC-cEEEeccc------ccCCcceEEE
Confidence 34689999999999876543 2346777665 55565421 1223456777
Q ss_pred eeC--CeeEEEEecCCCcHHHHHhhhcCh----------hhHhh-cCh---hhhhh--ccCCCceEEEEEcccCCCCCC-
Q 004738 173 RKG--STAVALYGLGNIRDERLNRMFQTP----------HAVQW-MRP---EAQEE--CQVSDWFNILVLHQNRVKTNP- 233 (732)
Q Consensus 173 ~kG--~t~vaLyGLg~irderL~~~f~~~----------~~v~~-l~P---~~~~~--~~~~~~fnILvlHqn~~~~~~- 233 (732)
... ...+.+|++||.+...+...|... ..+.. +.. ..... .-..+..||+|+|+.+.+...
T Consensus 120 ~~~~g~~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~v~g~~~~ 199 (407)
T PRK10966 120 PRRDGTPGAVLCAIPFLRPRDVITSQAGQSGIEKQQALQAAIADHYQQLYQLACELRDELGQPLPIIATGHLTTVGASKS 199 (407)
T ss_pred ecCCCCeeeEEEECCCCCHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEEEcCCccc
Confidence 543 345679999999977665544110 00100 000 00000 001356899999988776421
Q ss_pred ----------ccccccccCCcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCe-e
Q 004738 234 ----------KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-Y 302 (732)
Q Consensus 234 ----------~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~-~ 302 (732)
...++...++. ||||||||+|.+| .+.+ ...|+|||||+++||+|. ...|+|++|+++.++ +
T Consensus 200 ~sEr~~~vGg~~~v~~~~f~~-~dYvALGHlH~~Q----~v~~-~~~vrYsGSpl~~sFsE~-~~~K~v~lVel~~~~~~ 272 (407)
T PRK10966 200 DSVRDIYIGTLDAFPAQAFPP-ADYIALGHIHRAQ----KVGG-TEHIRYSGSPIPLSFDEL-GKSKSVHLVEFDQGKLQ 272 (407)
T ss_pred CCeeEeeecCCceecHHHCCc-cCeeeccccccCc----CCCC-CCcEEEcCCCCCCCcccc-CCCCeEEEEEEcCCccc
Confidence 12355667776 7999999999964 4532 357999999999999863 457999999998654 7
Q ss_pred EEEEEECCCCCcEEEEEEEeccCCCCCCCCHhHHHHHHHHHHHHHHHHhhhhccccccCCCCeEEEEEEeecccccChhh
Q 004738 303 RPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYSGFMTINPQR 382 (732)
Q Consensus 303 ~ve~IpL~tvRpf~~~eI~L~~~~~~~~~~~~ei~~~l~~~Ve~li~~a~~~~~~~~~~~~PLiRLrVd~sg~~~~n~~r 382 (732)
.+++|||...||+...+. +.+++.+ .+..+-. . .....++|+++|....... +
T Consensus 273 ~v~~i~l~~~~~l~~~~g-----------~~~el~~----~~~~l~~---~-----~~~~~~y~~v~l~d~~~~~-~--- 325 (407)
T PRK10966 273 SVTPLPVPVFQPMAVLKG-----------DLASITA----QLEQWRD---V-----SQEPPVWLDIEVTTDDYLH-D--- 325 (407)
T ss_pred eEEEEECCCCceeEEecC-----------CHHHHHH----HHHHhhh---c-----cCCCCcEEEEEEeCCCCCh-h---
Confidence 999999999998764331 1222322 1111100 0 1124689998888655322 3
Q ss_pred hhhHHhhcccC-ccceEEEee
Q 004738 383 FGQKYVGKVAN-PQDILIFSK 402 (732)
Q Consensus 383 fgq~f~g~VAN-p~dil~f~k 402 (732)
.-.+......| |..|+.+.+
T Consensus 326 ~~~~l~~~~~~~p~~il~i~~ 346 (407)
T PRK10966 326 IQRRIQALTESLPVEVLLVRR 346 (407)
T ss_pred HHHHHHHHcCCCCeEEEEEEe
Confidence 22455556666 766877753
No 5
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.98 E-value=3.9e-30 Score=278.50 Aligned_cols=232 Identities=16% Similarity=0.177 Sum_probs=164.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC-CChhHHHHHHH-HHHHhccCCCCcc
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK-PSRSTLVKAIE-ILRRHCLNDRPVQ 90 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~k-Ps~~tl~~~~e-lLr~l~~gd~p~~ 90 (732)
|||||+||||||....++.+.++...+|++++++|++++||+||++||+||... |+..++..+.+ +++++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L-------- 72 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL-------- 72 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 899999999999876666667778889999999999999999999999999964 44444433333 23332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCC--CchHHHhhhhCCceEEccceeecCCCccceeEE
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD--NLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~--~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~ 168 (732)
...++|||+|+||||...... .-++..+|...+++.+++.. .
T Consensus 73 ------------------------~~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~------------~ 116 (340)
T PHA02546 73 ------------------------KEAGITLHVLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEP------------T 116 (340)
T ss_pred ------------------------HHCCCeEEEEccCCCcccccccccCchHHHHhhCCCEEEeCCc------------e
Confidence 145899999999999754321 12355677777777777542 1
Q ss_pred EEEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCC----C--CccccccccC
Q 004738 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT----N--PKNAINEHFL 242 (732)
Q Consensus 169 Pvll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~----~--~~~~I~e~lL 242 (732)
++.+ + .+.++++||...+.+..++ .++. ....+|+++|+.+.+. + ....++..++
T Consensus 117 ~v~i--~--g~~i~~lP~~~~~~~~~~~------~~l~---------~~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~ 177 (340)
T PHA02546 117 TVDF--D--GCSIDLIPWICKENTEEIL------EFIK---------NSKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL 177 (340)
T ss_pred EEEE--C--CEEEEECCCCCHHHHHHHH------HHhc---------cCCCcEEEEeeEEecCcccCCCccccCCChhHh
Confidence 2222 2 3567889998766543322 2222 2457999999865542 1 1123444455
Q ss_pred CcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEEECCCCCcEEEEEE
Q 004738 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (732)
Q Consensus 243 p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~IpL~tvRpf~~~eI 320 (732)
..|||||+||+|.++ .. ..|+|||||++++|+| +..+|||++|++..+ +++++|+. .|+|..+..
T Consensus 178 -~~fdyvALGHiH~~~----~~----~~i~Y~GSp~~~sf~E-~~~~KG~~~vd~~~~--~~efip~~-~~~~~~i~~ 242 (340)
T PHA02546 178 -KKYKQVWSGHFHTIS----EK----GNVTYIGTPYTLTAGD-ENDPRGFWVFDTETH--KLEFIANP-TTWHRRITY 242 (340)
T ss_pred -ccCCEEeecccccCc----cc----CCEEEeCCceeeCccc-cCCCCeEEEEECCCC--ceEEEeCC-CceEEEEEe
Confidence 459999999999963 22 3699999999999986 356899999998765 47899987 588985554
No 6
>PF04152 Mre11_DNA_bind: Mre11 DNA-binding presumed domain ; InterPro: IPR007281 The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication []. Mre11 has an intrinsic DNA-binding activity that is stimulated by Rad50 on its own or in combination with Nbs1 [].; GO: 0004519 endonuclease activity, 0030145 manganese ion binding, 0006302 double-strand break repair, 0005634 nucleus; PDB: 4FBW_B 4FBK_A 4FCX_B 4FBQ_B 3T1I_B.
Probab=99.98 E-value=1.2e-32 Score=272.83 Aligned_cols=154 Identities=44% Similarity=0.777 Sum_probs=79.7
Q ss_pred eEEEEEECCCCCcEEEEEEEeccCC-CCCCCCHhHHHHHHHHHHHHHHHHhhhhc-----------cccccCCCCeEEEE
Q 004738 302 YRPTKIPLTSVRPFEYTEIILKDEA-DIDPDDQNSILEHLDKVVRNLIERSSKKT-----------VNRSELKLPLVRIK 369 (732)
Q Consensus 302 ~~ve~IpL~tvRpf~~~eI~L~~~~-~~~~~~~~ei~~~l~~~Ve~li~~a~~~~-----------~~~~~~~~PLiRLr 369 (732)
|++++|||+|||||++.+|+|++.. ..++.+.++|.++|.++|++||++|+.++ ....++++||||||
T Consensus 1 f~~~pIpLkTVRPFv~~~i~L~~~~~~~~~~~~~~v~~~l~~~Ve~mI~~A~~~~~~~~~~~~~~~~~~~~~~lPLIRLR 80 (175)
T PF04152_consen 1 FRLEPIPLKTVRPFVFDDIVLSDEPLPLDPDNKEDVEKFLREKVEEMIEEAKEEWEELQREPDDQTGHPKQPPLPLIRLR 80 (175)
T ss_dssp EEEEEEE-SSS--EEEEEEEGGG-TSSSSTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHHT--STTTSSS-SS-EEEEE
T ss_pred CCcccccCCCCCCEEEEEEEeCCcCCCCCcchHHHHHHHHHHHHHHHHHHhHhhhccccccccccccCcccCCCCEEEEE
Confidence 6899999999999999999999986 45677789999999999999999999876 23457899999999
Q ss_pred EEeec-ccccChhhhhhHHhhcccCccceEEEeeccccccc------ccccccccccCccccchhhHHHHHHhh--cccc
Q 004738 370 VDYSG-FMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKA------EAKIDDFERLRPEELNQQNIEALVAEN--NLKM 440 (732)
Q Consensus 370 Vd~sg-~~~~n~~rfgq~f~g~VANp~dil~f~k~~~~~~~------~~~~~~~~~~~~~~l~~~~i~~lv~e~--~~~l 440 (732)
|+||| |+++||+||||+|+|+||||+|||+|||+++++.. .....+.....++.+++.+|++||.++ ..+|
T Consensus 81 Vdys~~~~~~N~~RFgq~FvgrVANP~Dil~f~rkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~lV~~~l~~~~L 160 (175)
T PF04152_consen 81 VDYSGGFEVFNPQRFGQRFVGRVANPNDILQFYRKKKKKKKKKKKKDEDDPDEEEPLAPEELDQVRVEDLVKEYLSAQKL 160 (175)
T ss_dssp EE-TTT-----CHHHHHCCTTTBS-SSSSEEEE-----------------------------------------------
T ss_pred EEecCCCcccCHHHHHHHhccccCChHHeEEEEecccccccccccccccccchhhhccccccccccHHHHHHHHHhhCCc
Confidence 99999 99999999999999999999999999987654332 112223344566778899999999995 6789
Q ss_pred ccccCCcHHHHHHHH
Q 004738 441 EIIPVNDLDVALHNF 455 (732)
Q Consensus 441 ~~l~~~~l~~av~~f 455 (732)
+||++.+|++||++|
T Consensus 161 ~lL~e~~l~eAv~~F 175 (175)
T PF04152_consen 161 SLLPENGLNEAVEEF 175 (175)
T ss_dssp ---------------
T ss_pred cccCHHHHHHHHHhC
Confidence 999999999999988
No 7
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.1e-27 Score=249.59 Aligned_cols=227 Identities=21% Similarity=0.237 Sum_probs=147.0
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
|||||+||||||.......|..+.+.+|+++++.+++++||+||++||+||...|+..+...+.+.|.++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~--------- 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS--------- 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 89999999999987766667778888999999999999999999999999999888765544555555542
Q ss_pred eechhhhhcccccCccccCCCCCCCC-CcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEE
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVG-LPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~-IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvl 171 (732)
..+ +|||+|+||||.+...... ..++.. ..|++++... ....|+.
T Consensus 72 -----------------------~~~~i~v~~i~GNHD~~~~~~~~--~~l~~~-~~v~i~~~~~--------~~~~~~~ 117 (253)
T TIGR00619 72 -----------------------DANPIPIVVISGNHDSAQRLSAA--KKLLIE-LGVFVVGFPV--------GDPQILL 117 (253)
T ss_pred -----------------------hcCCceEEEEccCCCChhhcccc--hhHHHh-CCeEEEEecc--------cCceEEE
Confidence 234 9999999999998654322 234443 4567776532 1224555
Q ss_pred EeeC--CeeEEEEecCCCcHHHHHhhhcChhh-----------Hhh-cChhhhhhccCCCceEEEEEcccCCCCC-----
Q 004738 172 IRKG--STAVALYGLGNIRDERLNRMFQTPHA-----------VQW-MRPEAQEECQVSDWFNILVLHQNRVKTN----- 232 (732)
Q Consensus 172 l~kG--~t~vaLyGLg~irderL~~~f~~~~~-----------v~~-l~P~~~~~~~~~~~fnILvlHqn~~~~~----- 232 (732)
+..+ +..+.++...+..+.++.+.+.+... +.. +... ... ..++.+||+|+|+.+.+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Il~~H~~v~g~~~~~se 195 (253)
T TIGR00619 118 LKDTANGELLIVGLPLLPREALLTRAGLDGFGLELLLLHLDVKLRQALEGL-IRR-LDPDLPKILLAHLFTAGATKSATE 195 (253)
T ss_pred eccCCCCceEEEEeccCCHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH-HHh-cCCCCCEEEEEcceeccCCCcCce
Confidence 5532 22333333344333333222211000 010 1000 000 1245789999999987642
Q ss_pred ------CccccccccCCcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCe
Q 004738 233 ------PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKH 291 (732)
Q Consensus 233 ------~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kg 291 (732)
+...++...++. +||||+||+|.++. ..+ ...++|||||.++||+|. ...|+
T Consensus 196 ~~~~~g~~~~v~~~~~~~-~dYvALGHiH~~q~----~~~-~~~i~YsGSp~~~sf~E~-~~~K~ 253 (253)
T TIGR00619 196 RRIYIGFTYAVPLINFPE-ADYVALGHHHIHKI----SKG-RERVRYSGSPFPLSFDEA-GEDKG 253 (253)
T ss_pred EEeeECCccccCHHHCCc-cchhhccccccccc----cCC-CCCEEECCCCccCCcCcc-cCCCC
Confidence 122344556666 69999999999643 333 457999999999999862 33453
No 8
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.94 E-value=5.7e-26 Score=227.43 Aligned_cols=215 Identities=42% Similarity=0.624 Sum_probs=150.0
Q ss_pred EEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcc
Q 004738 14 RILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~---~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~ 90 (732)
||+|+||+|||...... .|..+.+.+|+++++.+.+.+||+||++||+|+...++...+..+.+.|.++.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~------- 73 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLK------- 73 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH-------
Confidence 79999999999865433 25788999999999999999999999999999998888777777777777652
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEE
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pv 170 (732)
..++|||+|+||||.+........ .+. ...+.+++. ......+.
T Consensus 74 -------------------------~~~~~v~~~~GNHD~~~~~~~~~~--~~~-~~~~~~~~~--------~~~~~~~~ 117 (223)
T cd00840 74 -------------------------EAGIPVFIIAGNHDSPSRLGALSP--LLA-LSGLHLVGV--------EEDVLTPL 117 (223)
T ss_pred -------------------------HCCCCEEEecCCCCCccccccccc--hHh-hCcEEEEcc--------cCcceeEE
Confidence 247999999999999876543221 111 122222210 01122344
Q ss_pred EEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccc-----cccccCCcC
Q 004738 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA-----INEHFLPRF 245 (732)
Q Consensus 171 ll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~-----I~e~lLp~~ 245 (732)
.+..+...+.|||++|.........+.. ....... ...+.++|+++|+++.+..+... ....+...+
T Consensus 118 ~~~~~~~~v~i~g~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T cd00840 118 LLPKGGTGVAIYGLPYLRRSRLRDLLAD--AELRPRP------LDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAG 189 (223)
T ss_pred EeccCCeEEEEEECCCCCHHHHHHHHHH--HHHHhhc------cCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcC
Confidence 4556678999999999876554332210 0001100 13577999999999876543322 223456778
Q ss_pred CCEEEeCcccccccCCcccCCCCceEecCCCCcccccc
Q 004738 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLI 283 (732)
Q Consensus 246 ~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~ 283 (732)
+|||++||+|.+++. ...+..++||||+++++|+
T Consensus 190 ~d~v~~GH~H~~~~~----~~~~~~~~ypGS~~~~~f~ 223 (223)
T cd00840 190 FDYVALGHIHRPQII----LGGGPPIVYPGSPEGLSFS 223 (223)
T ss_pred CCEEECCCcccCeee----cCCCceEEeCCCccccCCC
Confidence 999999999998753 1224789999999999983
No 9
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.78 E-value=3.2e-18 Score=172.52 Aligned_cols=169 Identities=24% Similarity=0.300 Sum_probs=113.0
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
.|||+|+||+|++.... ...|+++++.+.+++||+||++||+|+...+.. ..+.++|+++
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~l--------- 60 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL---ELLLELLKKL--------- 60 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh---HHHHHHHhcc---------
Confidence 48999999999997543 246889999999999999999999999875543 2344555432
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEE
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvl 171 (732)
...+|||+++||||...+... .....+...|...+.+ +.+.
T Consensus 61 ------------------------~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~~L~~--------------~~~~ 101 (223)
T cd07385 61 ------------------------KAPLGVYAVLGNHDYYSGDEE-NWIEALESAGITVLRN--------------ESVE 101 (223)
T ss_pred ------------------------CCCCCEEEECCCcccccCchH-HHHHHHHHcCCEEeec--------------CcEE
Confidence 346899999999998765432 1145666655332222 2344
Q ss_pred EeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCcCCCEEEe
Q 004738 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVW 251 (732)
Q Consensus 172 l~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~DyVa~ 251 (732)
+..+...+.++|+++..... .. ....+ +. ...+.++|++.|++.. + +.+...++||+++
T Consensus 102 ~~~~~~~i~i~G~~~~~~~~-----~~--~~~~~-~~-----~~~~~~~I~l~H~P~~-------~-~~~~~~~~dl~l~ 160 (223)
T cd07385 102 ISVGGATIGIAGVDDGLGRR-----PD--LEKAL-KG-----LDEDDPNILLAHQPDT-------A-EEAAAWGVDLQLS 160 (223)
T ss_pred eccCCeEEEEEeccCccccC-----CC--HHHHH-hC-----CCCCCCEEEEecCCCh-------h-HHhcccCccEEEe
Confidence 56777899999976542210 00 00111 11 1346799999998532 1 2234568999999
Q ss_pred CcccccccC
Q 004738 252 GHEHECLID 260 (732)
Q Consensus 252 GH~H~~~i~ 260 (732)
||+|..|+.
T Consensus 161 GHtHggqi~ 169 (223)
T cd07385 161 GHTHGGQIR 169 (223)
T ss_pred ccCCCCEEe
Confidence 999999875
No 10
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.69 E-value=4.6e-16 Score=163.88 Aligned_cols=171 Identities=19% Similarity=0.301 Sum_probs=110.0
Q ss_pred CCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCC
Q 004738 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (732)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p 88 (732)
....|||+|+||+|++.... ...++++++.+++.+||+|+++||+++...+. ....+.+.|+++.
T Consensus 46 ~~~~~rI~~lSDlH~~~~~~--------~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~--~~~~~~~~L~~L~----- 110 (271)
T PRK11340 46 NAAPFKILFLADLHYSRFVP--------LSLISDAIALGIEQKPDLILLGGDYVLFDMPL--NFSAFSDVLSPLA----- 110 (271)
T ss_pred CCCCcEEEEEcccCCCCcCC--------HHHHHHHHHHHHhcCCCEEEEccCcCCCCccc--cHHHHHHHHHHHh-----
Confidence 34569999999999985322 34578899999999999999999999843222 1224555666541
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCch-HHHhhhhCCceEEccceeecCCCccceeE
Q 004738 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLS-AVDILSACNLVNYFGKMVLGGSGVGEITV 167 (732)
Q Consensus 89 ~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~ls-aldiL~~~glVn~FGk~~l~~~~~~~i~i 167 (732)
...|||+|.||||...+..... ..+.|...|. .++..
T Consensus 111 ----------------------------~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-~lL~n------------- 148 (271)
T PRK11340 111 ----------------------------ECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-TVLFN------------- 148 (271)
T ss_pred ----------------------------hcCCEEEecCCCCcccCccchHHHHHHHHhcCc-EEeeC-------------
Confidence 2469999999999865432211 2345665553 33321
Q ss_pred EEEEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCcCCC
Q 004738 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLD 247 (732)
Q Consensus 168 ~Pvll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~D 247 (732)
+.+.+..++..+.|+|++.....+ . . ....+ .++.|+|++.|++.. + +.+....+|
T Consensus 149 ~~~~i~~~~~~i~i~G~~d~~~~~----~-~--~~~~~---------~~~~~~IlL~H~P~~-------~-~~~~~~~~d 204 (271)
T PRK11340 149 QATVIATPNRQFELVGTGDLWAGQ----C-K--PPPAS---------EANLPRLVLAHNPDS-------K-EVMRDEPWD 204 (271)
T ss_pred CeEEEeeCCcEEEEEEecchhccC----C-C--hhHhc---------CCCCCeEEEEcCCCh-------h-HhhccCCCC
Confidence 234455566789999997532110 0 0 00001 136799999998632 1 223345799
Q ss_pred EEEeCcccccccC
Q 004738 248 FVVWGHEHECLID 260 (732)
Q Consensus 248 yVa~GH~H~~~i~ 260 (732)
|+++||+|++|+.
T Consensus 205 L~lsGHTHGGQi~ 217 (271)
T PRK11340 205 LMLCGHTHGGQLR 217 (271)
T ss_pred EEEeccccCCeEE
Confidence 9999999999874
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.61 E-value=2e-14 Score=151.33 Aligned_cols=87 Identities=24% Similarity=0.344 Sum_probs=65.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccC
Q 004738 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (732)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~g 85 (732)
...+.|||+|+||+||.........+.+....|+.+++.+++. +||+||++|||++... ...+..+++.|.+
T Consensus 10 ~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~---- 83 (275)
T PRK11148 10 AGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAP---- 83 (275)
T ss_pred CCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhh----
Confidence 3457799999999999543333334567888999999988765 6999999999999653 3444444444443
Q ss_pred CCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 86 d~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
..+|+|+|+||||..
T Consensus 84 -------------------------------l~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 84 -------------------------------LRKPCVWLPGNHDFQ 98 (275)
T ss_pred -------------------------------cCCcEEEeCCCCCCh
Confidence 358999999999974
No 12
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.56 E-value=3.7e-15 Score=141.12 Aligned_cols=75 Identities=24% Similarity=0.348 Sum_probs=49.7
Q ss_pred CceEEEEEcccCCCCCC-ccccccccCCcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEE
Q 004738 217 DWFNILVLHQNRVKTNP-KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLL 295 (732)
Q Consensus 217 ~~fnILvlHqn~~~~~~-~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LL 295 (732)
+..+|+++|........ ...+...+....+++|+.||+|..+.. +. .+..+++|||....... .+++|+++
T Consensus 80 ~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~--~~--~~~~~~~~Gs~~~~~~~----~~~~~~i~ 151 (156)
T PF12850_consen 80 DGFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVF--KI--GGIHVINPGSIGGPRHG----DQSGYAIL 151 (156)
T ss_dssp TTEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEE--EE--TTEEEEEE-GSSS-SSS----SSEEEEEE
T ss_pred cCCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEE--EE--CCEEEEECCcCCCCCCC----CCCEEEEE
Confidence 35688888886543211 112223344677999999999997653 22 35789999998776642 28999999
Q ss_pred EEeC
Q 004738 296 EIKE 299 (732)
Q Consensus 296 eI~~ 299 (732)
++++
T Consensus 152 ~~~~ 155 (156)
T PF12850_consen 152 DIED 155 (156)
T ss_dssp EETT
T ss_pred EEec
Confidence 9875
No 13
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.55 E-value=1.9e-14 Score=146.80 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
||+|+||+|+|.......+..+...+|+.+++.+++. +||+||++|||++...+ .....+.+.|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~---------- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAA---------- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhh----------
Confidence 6999999999964322233456678999999999988 99999999999997543 333344444432
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEE
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvl 171 (732)
.++|+++|+||||..... ...+..... ..+. .. ..
T Consensus 69 -------------------------~~~p~~~v~GNHD~~~~~-----~~~~~~~~~--~~~~--------~~-----~~ 103 (240)
T cd07402 69 -------------------------LPIPVYLLPGNHDDRAAM-----RAVFPELPP--APGF--------VQ-----YV 103 (240)
T ss_pred -------------------------cCCCEEEeCCCCCCHHHH-----HHhhccccc--cccc--------cc-----ee
Confidence 368999999999974211 112211100 0000 00 11
Q ss_pred EeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCC---cc-cc--c---cccC
Q 004738 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---KN-AI--N---EHFL 242 (732)
Q Consensus 172 l~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~---~~-~I--~---e~lL 242 (732)
+..+ .+.++++...........+. ...+.|+...... ..+...|+++|.+...... .. .. . ..++
T Consensus 104 ~~~~--~~~~i~lds~~~~~~~~~~~-~~ql~wL~~~L~~---~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l 177 (240)
T cd07402 104 VDLG--GWRLILLDSSVPGQHGGELC-AAQLDWLEAALAE---APDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVL 177 (240)
T ss_pred EecC--CEEEEEEeCCCCCCcCCEEC-HHHHHHHHHHHHh---CCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHH
Confidence 2222 34555554322110000011 1235565543321 2356889999998654321 00 00 0 1223
Q ss_pred C-c-CCCEEEeCcccccccCCcccCCCCceEecCCCC
Q 004738 243 P-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (732)
Q Consensus 243 p-~-~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~ 277 (732)
. . .+++|++||.|..... ... +..+++.||.
T Consensus 178 ~~~~~v~~v~~GH~H~~~~~--~~~--g~~~~~~gs~ 210 (240)
T cd07402 178 ARHPNVRAILCGHVHRPIDG--SWG--GIPLLTAPST 210 (240)
T ss_pred hcCCCeeEEEECCcCchHHe--EEC--CEEEEEcCcc
Confidence 2 3 6899999999997542 232 4566666664
No 14
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.54 E-value=4.1e-14 Score=133.69 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=58.0
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeee
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~l 94 (732)
|+|+||+|+|.......... ...|+++++.+.+.++|+|+++||||+...+ ..+..+.++|.++.
T Consensus 1 il~isD~Hl~~~~~~~~~~~--~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~l~----------- 65 (144)
T cd07400 1 ILHLSDLHFGPERKPELLAL--LSLLDRLLAEIKALDPDLVVITGDLTQRGLP--EEFEEAREFLDALP----------- 65 (144)
T ss_pred CeEeCccCCCCCcchhHHHH--HHHHHHHHHHHhccCCCEEEECCCCCCCCCH--HHHHHHHHHHHHcc-----------
Confidence 79999999997644322211 1227788999999999999999999997643 44455556666542
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 004738 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (732)
Q Consensus 95 Sd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~ 130 (732)
...+|+++|+||||.
T Consensus 66 ---------------------~~~~~~~~v~GNHD~ 80 (144)
T cd07400 66 ---------------------APLEPVLVVPGNHDV 80 (144)
T ss_pred ---------------------ccCCcEEEeCCCCeE
Confidence 112799999999997
No 15
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.54 E-value=4.6e-13 Score=139.33 Aligned_cols=238 Identities=14% Similarity=0.187 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCCCCCCc----hhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChh---HHHHHHHHHH
Q 004738 10 ANTVRILVATDCHLGYMEKD----EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRS---TLVKAIEILR 80 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d----~~R~~Ds~~aFeeIl~~A~e~--~VD~VLlaGDLFh~~kPs~~---tl~~~~elLr 80 (732)
.+.++|+|+||.|+|..... ..+..+....|+.+++.+.+. ++|+||++|||++....... ....+.++++
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 35799999999999964332 122234456789999999888 99999999999998654311 1111222222
Q ss_pred HhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCC
Q 004738 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGS 160 (732)
Q Consensus 81 ~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~ 160 (732)
+ ...++||++|+||||..... ....+..+. ..||..... .
T Consensus 82 ~---------------------------------~~~~vp~~~i~GNHD~~~~~-~~~~~~~f~-----~~~g~~~y~-~ 121 (262)
T cd07395 82 L---------------------------------LDPDIPLVCVCGNHDVGNTP-TEESIKDYR-----DVFGDDYFS-F 121 (262)
T ss_pred h---------------------------------ccCCCcEEEeCCCCCCCCCC-ChhHHHHHH-----HHhCCcceE-E
Confidence 1 13479999999999974221 111222221 123221000 0
Q ss_pred CccceeEEEEEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCC---ccc-
Q 004738 161 GVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---KNA- 236 (732)
Q Consensus 161 ~~~~i~i~Pvll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~---~~~- 236 (732)
..+++.+ |.|... ....-.+.+++.. ..+.|+...............|++.|.+.....+ ..+
T Consensus 122 ~~~~~~~--i~lds~-~~~~~~~~~~~~~----------~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~ 188 (262)
T cd07395 122 WVGGVFF--IVLNSQ-LFFDPSEVPELAQ----------AQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYF 188 (262)
T ss_pred EECCEEE--EEeccc-cccCccccccchH----------HHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccC
Confidence 0001110 111000 0000001112222 2356665443211001345789999998753221 111
Q ss_pred -cc-------cccC-CcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEE
Q 004738 237 -IN-------EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKI 307 (732)
Q Consensus 237 -I~-------e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~I 307 (732)
+. ..++ ..++++|++||.|..... ... +...+..|++. ..+. ..+.|+.+++|++++++.+..
T Consensus 189 ~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~--~~~--g~~~~~~~~~~-~~~~---~~~~g~~~~~v~~~~~~~~~~ 260 (262)
T cd07395 189 NIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG--RYG--GLEMVVTSAIG-AQLG---NDKSGLRIVKVTEDKIVHEYY 260 (262)
T ss_pred CcCHHHHHHHHHHHHhcCceEEEECccccCCce--EEC--CEEEEEcCcee-cccC---CCCCCcEEEEECCCceeeeee
Confidence 11 1122 357999999999986542 222 34444445443 3342 357899999999888877765
Q ss_pred E
Q 004738 308 P 308 (732)
Q Consensus 308 p 308 (732)
.
T Consensus 261 ~ 261 (262)
T cd07395 261 S 261 (262)
T ss_pred e
Confidence 4
No 16
>PRK09453 phosphodiesterase; Provisional
Probab=99.48 E-value=1.3e-12 Score=129.57 Aligned_cols=172 Identities=22% Similarity=0.314 Sum_probs=104.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC----CChhHHHHHHHHHHHhccCCCC
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK----PSRSTLVKAIEILRRHCLNDRP 88 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~k----Ps~~tl~~~~elLr~l~~gd~p 88 (732)
|||+++||+|.. +.+|+++++.+.+.++|.|+++||+|+... +.......+++.|++
T Consensus 1 mri~viSD~Hg~------------~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~------- 61 (182)
T PRK09453 1 MKLMFASDTHGS------------LPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA------- 61 (182)
T ss_pred CeEEEEEeccCC------------HHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh-------
Confidence 899999999954 336889999999999999999999998532 111112234444443
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEE
Q 004738 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (732)
Q Consensus 89 ~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~ 168 (732)
.+.++++|+||||.... ..+. + +
T Consensus 62 ----------------------------~~~~v~~V~GNhD~~~~-------~~~~--~----~---------------- 84 (182)
T PRK09453 62 ----------------------------YADKIIAVRGNCDSEVD-------QMLL--H----F---------------- 84 (182)
T ss_pred ----------------------------cCCceEEEccCCcchhh-------hhcc--C----C----------------
Confidence 25789999999996421 0000 0 0
Q ss_pred EEEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCcCCCE
Q 004738 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (732)
Q Consensus 169 Pvll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~Dy 248 (732)
|.. .++ .++ .-+..+|+++|+.... +. .+ ......|+
T Consensus 85 ~~~------------~~~----------------~~~---------~l~g~~i~l~HG~~~~--~~-~~---~~~~~~d~ 121 (182)
T PRK09453 85 PIM------------APY----------------QQV---------LLEGKRLFLTHGHLYG--PE-NL---PALHDGDV 121 (182)
T ss_pred ccc------------Cce----------------EEE---------EECCeEEEEECCCCCC--hh-hc---ccccCCCE
Confidence 000 000 000 0134678999975321 10 11 11235899
Q ss_pred EEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEEECCCCCcE
Q 004738 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPF 315 (732)
Q Consensus 249 Va~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~IpL~tvRpf 315 (732)
+++||+|.+... .. .+..+++|||.-... + .....|+++++. .++.+.|.+-++.
T Consensus 122 vi~GHtH~p~~~--~~--~~~~~iNpGs~~~p~---~-~~~~s~~il~~~----~~~~~~~~~~~~~ 176 (182)
T PRK09453 122 LVYGHTHIPVAE--KQ--GGIILFNPGSVSLPK---G-GYPASYGILDDN----VLSVIDLEGGEVI 176 (182)
T ss_pred EEECCCCCCcce--EE--CCEEEEECCCccccC---C-CCCCeEEEEECC----cEEEEECCCCeEE
Confidence 999999997653 22 257899999965322 2 234588999873 3455566655543
No 17
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.47 E-value=7e-13 Score=128.23 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=38.3
Q ss_pred cCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeE
Q 004738 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYR 303 (732)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ 303 (732)
..+|+|++||+|..... ... +..+++|||...... + .+.+|+++++.++.++
T Consensus 105 ~~~d~vi~GHtH~~~~~--~~~--~~~~iNpGs~~~~~~--~--~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 105 LGVDVLIFGHTHIPVAE--ELR--GILLINPGSLTGPRN--G--NTPSYAILDVDKDKVT 156 (158)
T ss_pred cCCCEEEECCCCCCccE--EEC--CEEEEECCccccccC--C--CCCeEEEEEecCCeEE
Confidence 46899999999997542 222 468999999875433 1 2669999999887654
No 18
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.45 E-value=1.3e-12 Score=125.24 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=49.2
Q ss_pred ceEEEEEcccCCCCCCccccccccCCcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEE
Q 004738 218 WFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEI 297 (732)
Q Consensus 218 ~fnILvlHqn~~~~~~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI 297 (732)
..+|+++|+..............+....+|||++||+|.+... ... +..+++|||...... ..+.+|+++++
T Consensus 75 g~~i~v~Hg~~~~~~~~~~~~~~~~~~~~d~vi~GHtH~~~~~--~~~--~~~~inpGs~~~~~~----~~~~~~~i~~~ 146 (155)
T cd00841 75 GKRIFLTHGHLYGVKNGLDRLYLAKEGGADVVLYGHTHIPVIE--KIG--GVLLLNPGSLSLPRG----GGPPTYAILEI 146 (155)
T ss_pred CEEEEEECCcccccccchhhhhhhhhcCCCEEEECcccCCccE--EEC--CEEEEeCCCccCcCC----CCCCeEEEEEe
Confidence 3567777765432111000001122346899999999998652 222 578999999765432 35789999999
Q ss_pred eCCeeEEEE
Q 004738 298 KENQYRPTK 306 (732)
Q Consensus 298 ~~~~~~ve~ 306 (732)
++ .++++.
T Consensus 147 ~~-~~~~~~ 154 (155)
T cd00841 147 DD-KGEVEI 154 (155)
T ss_pred cC-CCcEEE
Confidence 87 555553
No 19
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.44 E-value=4.5e-12 Score=126.17 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=44.4
Q ss_pred cCCCEEEeCcccccccCCcccCCCCceEecCCCCccc-ccccCccCCCeEEEEEEeCCeeEEEEEECCC
Q 004738 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVAT-SLIEGESKPKHVLLLEIKENQYRPTKIPLTS 311 (732)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vat-S~~egE~~~Kgv~LLeI~~~~~~ve~IpL~t 311 (732)
..+|+|++||+|.+... .. .+..+++|||.-.. .-..+ .....|++++++.+.+.++.+.|.-
T Consensus 105 ~~~dvii~GHTH~p~~~--~~--~g~~viNPGSv~~~~~~~~~-~~~~syail~~~~~~~~~~~~~l~~ 168 (178)
T cd07394 105 LDVDILISGHTHKFEAF--EH--EGKFFINPGSATGAFSPLDP-NVIPSFVLMDIQGSKVVTYVYQLID 168 (178)
T ss_pred cCCCEEEECCCCcceEE--EE--CCEEEEECCCCCCCCCCCCC-CCCCeEEEEEecCCeEEEEEEEEEC
Confidence 45799999999997552 22 25799999997421 11111 2245899999998888888888754
No 20
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.43 E-value=9.2e-14 Score=126.75 Aligned_cols=80 Identities=36% Similarity=0.554 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
|||+|+||+|+++.... . .+..+...+.+.++|+||++||+++...++.............
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~----------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRL----------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhh-----------
Confidence 79999999999965332 3 5678888899999999999999999887654433222101111
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g 133 (732)
....+|||+|+||||....
T Consensus 62 ----------------------~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 62 ----------------------LNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp ----------------------HHTTTTEEEEE-TTSSHHH
T ss_pred ----------------------hhcccccccccccccccee
Confidence 1357999999999998653
No 21
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.43 E-value=4.9e-12 Score=130.53 Aligned_cols=201 Identities=17% Similarity=0.298 Sum_probs=113.1
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcc
Q 004738 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~ 90 (732)
..+||+++||+|-. +.+++.+++.+++.++|+||++|||.+... ....+..+++.|.
T Consensus 3 ~~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-~~~~~~~~l~~l~---------- 59 (224)
T cd07388 3 TVRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAA-KSEDYAAFFRILG---------- 59 (224)
T ss_pred ceeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCC-CHHHHHHHHHHHH----------
Confidence 46899999999943 568899999999999999999999999752 2333333333333
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhh--------CCceEEccceeecCCCc
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--------CNLVNYFGKMVLGGSGV 162 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~--------~glVn~FGk~~l~~~~~ 162 (732)
..++||++|+||||.+. . ..|.. ++.+++.++.
T Consensus 60 -------------------------~l~~pv~~V~GNhD~~v-~------~~l~~~~~~~~~~p~~~~lh~~~------- 100 (224)
T cd07388 60 -------------------------EAHLPTFYVPGPQDAPL-W------EYLREAYNAELVHPEIRNVHETF------- 100 (224)
T ss_pred -------------------------hcCCceEEEcCCCChHH-H------HHHHHHhcccccCccceecCCCe-------
Confidence 23689999999999751 1 12221 2234444431
Q ss_pred cceeEEEEEEeeCCeeEEEEecCCCcHHHHHhhhcChh---hHhhcChhhhhhc-cCCCceEEEEEcccCCCCC----Cc
Q 004738 163 GEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPH---AVQWMRPEAQEEC-QVSDWFNILVLHQNRVKTN----PK 234 (732)
Q Consensus 163 ~~i~i~Pvll~kG~t~vaLyGLg~irderL~~~f~~~~---~v~~l~P~~~~~~-~~~~~fnILvlHqn~~~~~----~~ 234 (732)
+.+. ..+.++|+|...... ..+.+.. ...|+.......+ .......||+.|.+..+.+ +.
T Consensus 101 -------~~~~---g~~~~~GlGGs~~~~--~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~GS 168 (224)
T cd07388 101 -------AFWR---GPYLVAGVGGEIADE--GEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQGS 168 (224)
T ss_pred -------EEec---CCeEEEEecCCcCCC--CCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccCH
Confidence 1111 235567776432110 0000000 0011100000000 0124589999999876542 11
Q ss_pred cccccccC-CcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCe
Q 004738 235 NAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ 301 (732)
Q Consensus 235 ~~I~e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~ 301 (732)
..+- .++ .....|+++||+|... ..+. +..|++||+ +.+| +|+++++++..
T Consensus 169 ~alr-~~I~~~~P~l~i~GHih~~~---~~~g--~t~vvNpg~-----~~~g-----~~a~i~~~~~~ 220 (224)
T cd07388 169 HEVA-HLIKTHNPLVVLVGGKGQKH---ELLG--ASWVVVPGD-----LSEG-----RYALLDLRARK 220 (224)
T ss_pred HHHH-HHHHHhCCCEEEEcCCceeE---EEeC--CEEEECCCc-----ccCC-----cEEEEEecCcc
Confidence 1111 222 2346799999999432 2332 468999998 2223 57899987543
No 22
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.42 E-value=3.2e-12 Score=132.28 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC---CChhHHHHHHHHHHHhccCCCCc
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK---PSRSTLVKAIEILRRHCLNDRPV 89 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~k---Ps~~tl~~~~elLr~l~~gd~p~ 89 (732)
|||+|+||+|+|.... +..++|.+.++ ..+.+||+|+++||+||... ........+.++|+++.
T Consensus 1 M~i~~iSDlHl~~~~~------~~~~~~~~~l~-~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~------ 67 (241)
T PRK05340 1 MPTLFISDLHLSPERP------AITAAFLRFLR-GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS------ 67 (241)
T ss_pred CcEEEEeecCCCCCCh------hHHHHHHHHHH-hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH------
Confidence 7999999999996432 22345655553 24568999999999998521 11122334555665542
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004738 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~ 132 (732)
..++|||+|+||||...
T Consensus 68 --------------------------~~g~~v~~v~GNHD~~~ 84 (241)
T PRK05340 68 --------------------------DSGVPCYFMHGNRDFLL 84 (241)
T ss_pred --------------------------HcCCeEEEEeCCCchhh
Confidence 34689999999999754
No 23
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.42 E-value=5.2e-12 Score=132.59 Aligned_cols=86 Identities=23% Similarity=0.317 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCCCCCc-hhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHhccCCCCcc
Q 004738 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d-~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs-~~tl~~~~elLr~l~~gd~p~~ 90 (732)
+||+++||+|++..... .....++...|+.+++.+++.+||+||++|||++...+. ...+..+.+.|.
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~---------- 70 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILD---------- 70 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHH----------
Confidence 69999999998865432 233456788999999999999999999999999877653 122333333333
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g 133 (732)
+.++|+++++||||....
T Consensus 71 -------------------------~l~~p~~~v~GNHD~~~~ 88 (267)
T cd07396 71 -------------------------RLKGPVHHVLGNHDLYNP 88 (267)
T ss_pred -------------------------hcCCCEEEecCccccccc
Confidence 236899999999998643
No 24
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.40 E-value=1.2e-12 Score=127.66 Aligned_cols=176 Identities=23% Similarity=0.327 Sum_probs=93.7
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeee
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~l 94 (732)
|+++||+|.++. .++. ..+.+.++|+||++|||++...+.. +..++.|.
T Consensus 1 i~~~sD~H~~~~------------~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~---~~~~~~l~-------------- 49 (188)
T cd07392 1 ILAISDIHGDVE------------KLEA--IILKAEEADAVIVAGDITNFGGKEA---AVEINLLL-------------- 49 (188)
T ss_pred CEEEEecCCCHH------------HHHH--HHhhccCCCEEEECCCccCcCCHHH---HHHHHHHH--------------
Confidence 789999999842 2333 4556789999999999998765432 12223333
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEEEee
Q 004738 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRK 174 (732)
Q Consensus 95 Sd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvll~k 174 (732)
..++|+|+|+||||.+.... .+. .+..+.-+. .+.+
T Consensus 50 ---------------------~~~~p~~~v~GNHD~~~~~~------~~~-~~~~~~~~~--------------~~~~-- 85 (188)
T cd07392 50 ---------------------AIGVPVLAVPGNCDTPEILG------LLT-SAGLNLHGK--------------VVEV-- 85 (188)
T ss_pred ---------------------hcCCCEEEEcCCCCCHHHHH------hhh-cCcEecCCC--------------EEEE--
Confidence 24689999999999753211 111 111111111 1111
Q ss_pred CCeeEEEEecCCCcHHHH--HhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCC-CCc---c-ccc----cccC-
Q 004738 175 GSTAVALYGLGNIRDERL--NRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPK---N-AIN----EHFL- 242 (732)
Q Consensus 175 G~t~vaLyGLg~irderL--~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~-~~~---~-~I~----e~lL- 242 (732)
+ .+.++|++....... ...+.. ..+.++ ... ......+.|+++|++..+. ... . ... ..++
T Consensus 86 ~--~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~-~~l---~~~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~ 158 (188)
T cd07392 86 G--GYTFVGIGGSNPTPFNTPIELSE-EEIVSD-GRL---NNLLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIE 158 (188)
T ss_pred C--CEEEEEeCCCCCCCCCCccccCH-HHHHHh-hhh---hccCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHH
Confidence 1 256677643210000 001111 223333 000 0124578999999987541 100 0 000 1223
Q ss_pred CcCCCEEEeCcccccccCCcccCCCCceEecCC
Q 004738 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPG 275 (732)
Q Consensus 243 p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPG 275 (732)
....++|++||+|..... ..+. +..+++||
T Consensus 159 ~~~~~~~l~GH~H~~~~~-~~~~--~~~~~n~G 188 (188)
T cd07392 159 ERQPLLCICGHIHESRGV-DKIG--NTLVVNPG 188 (188)
T ss_pred HhCCcEEEEeccccccce-eeeC--CeEEecCC
Confidence 235799999999997521 2232 35788887
No 25
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.37 E-value=9.9e-12 Score=130.12 Aligned_cols=214 Identities=13% Similarity=0.068 Sum_probs=105.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHH-HHHHHHHHHhcCCCEEEEcCCCCCCCCCCh----hHHHHHHHHHHHhccCCCCc
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEA-FEEICSIAEQKEVDFVLLGGDLFHENKPSR----STLVKAIEILRRHCLNDRPV 89 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~a-FeeIl~~A~e~~VD~VLlaGDLFh~~kPs~----~tl~~~~elLr~l~~gd~p~ 89 (732)
|+|+||+|+|...... ... ++.+++.+++.+||+||++||+++...... ........+++.+.
T Consensus 2 ~~~iSDlH~g~~~~~~------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~------ 69 (256)
T cd07401 2 FVHISDIHVSSFHPPN------RAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILK------ 69 (256)
T ss_pred EEEecccccCCcCchh------hhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHH------
Confidence 7999999999654321 112 366888888999999999999998764321 00111112222211
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEE
Q 004738 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYP 169 (732)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~P 169 (732)
.+. .-..+|+|.|+||||.............+. .|++.. ........
T Consensus 70 --------------~~~--------~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~-----~y~~~~------~~~~~~~~ 116 (256)
T cd07401 70 --------------ESS--------VINKEKWFDIRGNHDLFNIPSLDSENNYYR-----KYSATG------RDGSFSFS 116 (256)
T ss_pred --------------HhC--------CCCcceEEEeCCCCCcCCCCCccchhhHHH-----Hhheec------CCCccceE
Confidence 000 012589999999999842211111111111 111110 00000011
Q ss_pred EEEeeCCeeEEEEecCCCcH--HH----HHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCcc-----ccc
Q 004738 170 ILIRKGSTAVALYGLGNIRD--ER----LNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN-----AIN 238 (732)
Q Consensus 170 vll~kG~t~vaLyGLg~ird--er----L~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~-----~I~ 238 (732)
.... ...+.+.|+..... .+ ....+. ...+.|+...... .......|+++|++.....+.. .+.
T Consensus 117 ~~~~--~~~~~~I~Ldt~~~~~~~~~~~~~g~l~-~~ql~wL~~~L~~--~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~ 191 (256)
T cd07401 117 HTTR--FGNYSFIGVDPTLFPGPKRPFNFFGSLD-KKLLDRLEKELEK--STNSNYTIWFGHYPTSTIISPSAKSSSKFK 191 (256)
T ss_pred EEec--CCCEEEEEEcCccCCCCCCCCceeccCC-HHHHHHHHHHHHh--cccCCeEEEEEcccchhccCCCcchhHHHH
Confidence 1111 12355555543210 00 000011 1335555433221 1234579999999874321110 011
Q ss_pred cccCCcCCCEEEeCccccccc-CCcccCCC-CceEecCCCCc
Q 004738 239 EHFLPRFLDFVVWGHEHECLI-DPQEVPGM-GFHLTQPGSSV 278 (732)
Q Consensus 239 e~lLp~~~DyVa~GH~H~~~i-~Pq~~~~~-g~~I~yPGS~v 278 (732)
+-+....+++|++||+|.... .|+...+. ...|+||..+-
T Consensus 192 ~ll~~~~v~~vl~GH~H~~~~~~p~h~~~~~~~~~~~p~~~~ 233 (256)
T cd07401 192 DLLKKYNVTAYLCGHLHPLGGLEPVHYAGHPYALITNPKPSL 233 (256)
T ss_pred HHHHhcCCcEEEeCCccCCCcceeeeecCCceEEEeCCCChH
Confidence 123345799999999999887 66654432 24466776653
No 26
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.37 E-value=7.4e-12 Score=129.08 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCCCCc--hhch---hcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCc
Q 004738 15 ILVATDCHLGYMEKD--EIRR---HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (732)
Q Consensus 15 ILh~SD~HLG~~e~d--~~R~---~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~ 89 (732)
|.++||+||+..... +..+ .+..+.+.++++.+. .+||+||++|||++...+. .....++.|+.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~D~viiaGDl~~~~~~~--~~~~~l~~l~~-------- 69 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVV-APEDIVLIPGDISWAMKLE--EAKLDLAWIDA-------- 69 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcC-CCCCEEEEcCCCccCCChH--HHHHHHHHHHh--------
Confidence 578999999963211 1112 222333333333333 2899999999999654322 23344444443
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
...|+|+|+||||..
T Consensus 70 ---------------------------l~~~v~~V~GNHD~~ 84 (232)
T cd07393 70 ---------------------------LPGTKVLLKGNHDYW 84 (232)
T ss_pred ---------------------------CCCCeEEEeCCcccc
Confidence 134899999999974
No 27
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.36 E-value=6.5e-12 Score=125.88 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=40.6
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 004738 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS 68 (732)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs 68 (732)
+.|||+|+||+|+|..............++..+.+.+.+.+||+||++|||++...+.
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~ 58 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTN 58 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCc
Confidence 3699999999999986432111111234455555556678999999999999987664
No 28
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.35 E-value=2.6e-11 Score=123.94 Aligned_cols=203 Identities=23% Similarity=0.380 Sum_probs=118.1
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCCChhHHHHHHHH--HHHhccCC
Q 004738 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEI--LRRHCLND 86 (732)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLF--h~~kPs~~tl~~~~el--Lr~l~~gd 86 (732)
.+||||.+||+|-.+ ..|.+++..|...++|+++++|||. |-..+-. +.+. +..+
T Consensus 2 ~~mkil~vtDlHg~~------------~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~-----~~~~~~~e~l---- 60 (226)
T COG2129 2 KKMKILAVTDLHGSE------------DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEV-----AEELNKLEAL---- 60 (226)
T ss_pred CcceEEEEeccccch------------HHHHHHHHHHhhccCCEEEEecceehhhcCchHH-----HHhhhHHHHH----
Confidence 479999999999873 4688999999999999999999998 7654322 1221 2222
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCcccee
Q 004738 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (732)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~ 166 (732)
...++|||+++||.|.+.- .++|... .++..++..
T Consensus 61 ----------------------------~~~~~~v~avpGNcD~~~v------~~~l~~~-~~~v~~~v~---------- 95 (226)
T COG2129 61 ----------------------------KELGIPVLAVPGNCDPPEV------IDVLKNA-GVNVHGRVV---------- 95 (226)
T ss_pred ----------------------------HhcCCeEEEEcCCCChHHH------HHHHHhc-ccccccceE----------
Confidence 1358999999999997743 2455553 345555421
Q ss_pred EEEEEEeeCCeeEEEEecCCCcHHHH--HhhhcCh---hhHhhcChhhhhhccCCCceEEEEEcccCCCCC---Cccccc
Q 004738 167 VYPILIRKGSTAVALYGLGNIRDERL--NRMFQTP---HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN---PKNAIN 238 (732)
Q Consensus 167 i~Pvll~kG~t~vaLyGLg~irderL--~~~f~~~---~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~---~~~~I~ 238 (732)
+.+. +.+.|+|.....-+ .+.|.+. ..++++... .....||+++|.+..+.. +..+..
T Consensus 96 ------~i~~--~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~------~~~~~~Il~~HaPP~gt~~d~~~g~~h 161 (226)
T COG2129 96 ------EIGG--YGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK------ADNPVNILLTHAPPYGTLLDTPSGYVH 161 (226)
T ss_pred ------EecC--cEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc------ccCcceEEEecCCCCCccccCCCCccc
Confidence 1222 23333332211000 0001000 112333221 123345999999866532 111111
Q ss_pred ---c---ccCCcCCC--EEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEE
Q 004738 239 ---E---HFLPRFLD--FVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKI 307 (732)
Q Consensus 239 ---e---~lLp~~~D--yVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~I 307 (732)
. .++ ..|+ +.++||+|+..-. ..+ .+..+++||+ ++ ..+|+++++.+..++.+.+
T Consensus 162 vGS~~vr~~i-eefqP~l~i~GHIHEs~G~-d~i--G~TivVNPG~-----~~-----~g~yA~i~l~~~~Vk~~~~ 224 (226)
T COG2129 162 VGSKAVRKLI-EEFQPLLGLHGHIHESRGI-DKI--GNTIVVNPGP-----LG-----EGRYALIELEKEVVKLEQF 224 (226)
T ss_pred cchHHHHHHH-HHhCCceEEEeeecccccc-ccc--CCeEEECCCC-----cc-----CceEEEEEecCcEEEEEEe
Confidence 0 111 2244 9999999986543 223 2467899998 32 4579999999886665543
No 29
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.28 E-value=9.6e-11 Score=119.53 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=59.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
++|++++|+|++.... + ......+++|++.+.+.++|+||++|||++.... ......+.++|+.+.
T Consensus 1 f~~~~~~D~q~~~~~~-~---~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-~~~~~~~~~~~~~l~--------- 66 (214)
T cd07399 1 FTLAVLPDTQYYTESY-P---EVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-DAEWEAADKAFARLD--------- 66 (214)
T ss_pred CEEEEecCCCcCCcCC-H---HHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-HHHHHHHHHHHHHHH---------
Confidence 6899999999975422 1 1223466889999999999999999999997652 334455556665541
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD 129 (732)
..++|+++++||||
T Consensus 67 -----------------------~~~~p~~~~~GNHD 80 (214)
T cd07399 67 -----------------------KAGIPYSVLAGNHD 80 (214)
T ss_pred -----------------------HcCCcEEEECCCCc
Confidence 24799999999999
No 30
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.27 E-value=2.4e-11 Score=125.38 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceee
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~ 93 (732)
||+|+||+|+++...+ ....++.+++.+.+.++|+||++|||++... ..+..++.|.+.
T Consensus 1 ki~~iSDlH~~~~~~~------~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~----~~~~~~~~l~~~----------- 59 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFD------TEEMLETLAQYLKKQKIDHLHIAGDISNDFQ----RSLPFIEKLQEL----------- 59 (239)
T ss_pred CEEEEEeecCCCCCCC------HHHHHHHHHHHHHhcCCCEEEECCccccchh----hHHHHHHHHHHh-----------
Confidence 6999999999743322 2345788999898999999999999998631 112233333321
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004738 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 94 lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~ 132 (732)
.++|||+|+||||...
T Consensus 60 -----------------------~~~pv~~v~GNHD~~~ 75 (239)
T TIGR03729 60 -----------------------KGIKVTFNAGNHDMLK 75 (239)
T ss_pred -----------------------cCCcEEEECCCCCCCC
Confidence 3589999999999763
No 31
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.23 E-value=4.6e-11 Score=123.02 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=48.4
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHH-HHHHHHhcCCCEEEEcCCCCCCC---CCChhHHHHHHHHHHHhccCCCCcc
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEE-ICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFee-Il~~A~e~~VD~VLlaGDLFh~~---kPs~~tl~~~~elLr~l~~gd~p~~ 90 (732)
++|+||+|+|....+ ..+.|-+ +.+.+ .+||+|+++||+||.. .+.......+.+.|+++.
T Consensus 1 ~~~iSDlHl~~~~~~------~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~------- 65 (231)
T TIGR01854 1 TLFISDLHLSPERPD------ITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS------- 65 (231)
T ss_pred CeEEEecCCCCCChh------HHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH-------
Confidence 379999999964321 1223322 32222 2899999999999942 112222234445555431
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~ 132 (732)
..++|||+|+||||...
T Consensus 66 -------------------------~~~~~v~~v~GNHD~~~ 82 (231)
T TIGR01854 66 -------------------------DQGVPCYFMHGNRDFLI 82 (231)
T ss_pred -------------------------HCCCeEEEEcCCCchhh
Confidence 34689999999999753
No 32
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.20 E-value=2.6e-10 Score=113.40 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=44.4
Q ss_pred cCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEEEEECC
Q 004738 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLT 310 (732)
Q Consensus 244 ~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve~IpL~ 310 (732)
..+|.+++||+|..... +.. +..+++|||+..... ..++.|+++++.+.++.+..+...
T Consensus 108 ~~~Dvli~GHTH~p~~~--~~~--~i~~vNPGS~s~pr~----~~~~sy~il~~~~~~~~~~~~~~~ 166 (172)
T COG0622 108 LGADVLIFGHTHKPVAE--KVG--GILLVNPGSVSGPRG----GNPASYAILDVDNLEVEVLFLERD 166 (172)
T ss_pred cCCCEEEECCCCcccEE--EEC--CEEEEcCCCcCCCCC----CCCcEEEEEEcCCCEEEEEEeecc
Confidence 45999999999997653 333 478999999865443 257799999999888777765443
No 33
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.15 E-value=3.3e-10 Score=120.84 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCC-CCCChhHHHHHHHHHHHhccCC
Q 004738 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLND 86 (732)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~-~kPs~~tl~~~~elLr~l~~gd 86 (732)
.....+||+|+||+|..... ....+.+.....+.+|+|+++||+++. ..+... .++..|.++
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~----------~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~---~~~~~L~~L---- 102 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR----------EEKLALLIAIANELPDLIVLTGDYVDGDRPPGVA---ALALFLAKL---- 102 (284)
T ss_pred cccCCeEEEEeehhhhchhh----------HHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHH---HHHHHHHhh----
Confidence 34567899999999998543 123333334444555999999999996 444433 455566554
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCC
Q 004738 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN 147 (732)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~g 147 (732)
....+||+|.||||..........-+++...+
T Consensus 103 -----------------------------~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~ 134 (284)
T COG1408 103 -----------------------------KAPLGVFAVLGNHDYGVDRSNVYIGDLLEELG 134 (284)
T ss_pred -----------------------------hccCCEEEEecccccccccccchhhhhhhhcc
Confidence 46789999999999987654432224555444
No 34
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.14 E-value=1.4e-09 Score=114.61 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=53.8
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC-hhHHHHHHHHHHHhccCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRP 88 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs-~~tl~~~~elLr~l~~gd~p 88 (732)
...+||++++|+|.+.. .+.++++.+++. ..++||||++|||....... .......++.+..+
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~------ 65 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL------ 65 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH------
Confidence 46799999999998622 123455555444 57999999999998654322 12223344444432
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004738 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (732)
Q Consensus 89 ~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g 133 (732)
...+|+++++||||....
T Consensus 66 ---------------------------~~~~P~~~~~GNHD~~~~ 83 (294)
T cd00839 66 ---------------------------ASYVPYMVTPGNHEADYN 83 (294)
T ss_pred ---------------------------HhcCCcEEcCcccccccC
Confidence 236899999999998654
No 35
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.10 E-value=3.6e-09 Score=110.76 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=59.4
Q ss_pred hhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccc---cc---cccC-CcCCCEEEeCcccccccCCcccCCCCceEe
Q 004738 200 HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA---IN---EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLT 272 (732)
Q Consensus 200 ~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~---I~---e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~ 272 (732)
.+++|+...... ....+.|++.|.+......... .- ..++ ...+++|++||.|...... ....+...+
T Consensus 152 ~Q~~wL~~~L~~---~~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~--~~~~~~~~i 226 (277)
T cd07378 152 EQLAWLEKTLAA---STADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK--DDGSGTSFV 226 (277)
T ss_pred HHHHHHHHHHHh---cCCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeee--cCCCCcEEE
Confidence 356777655432 2236789999998754322111 11 1223 3469999999999876531 111133444
Q ss_pred cCCCCccc--ccc----------cCccCCCeEEEEEEeCCeeEEEEEEC
Q 004738 273 QPGSSVAT--SLI----------EGESKPKHVLLLEIKENQYRPTKIPL 309 (732)
Q Consensus 273 yPGS~vat--S~~----------egE~~~Kgv~LLeI~~~~~~ve~IpL 309 (732)
..|+.-.. ... .......||.+|+|.++.+.++++..
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~ 275 (277)
T cd07378 227 VSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDA 275 (277)
T ss_pred EeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECC
Confidence 44443211 110 01124589999999999888887754
No 36
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.10 E-value=1.1e-09 Score=113.14 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCCh-hHHHHHHHHHHHhccCCCCcc
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD-~VLlaGDLFh~~kPs~-~tl~~~~elLr~l~~gd~p~~ 90 (732)
++|+|+||+| |....- -..-.+..+..+++..+++.+| ++|.+||+++...++. ......+++|..
T Consensus 1 l~i~~~sD~h-g~~~~~--~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~--------- 68 (252)
T cd00845 1 LTILHTNDLH-GHFEPA--GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA--------- 68 (252)
T ss_pred CEEEEecccc-cCcccc--CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---------
Confidence 5899999999 543210 1112356788889988888999 7789999998765432 111123333322
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceee-cCCCccceeEEE
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL-GGSGVGEITVYP 169 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l-~~~~~~~i~i~P 169 (732)
.++ .+++.||||...+...+ ...+...+.. +++.... .........+.|
T Consensus 69 --------------------------~g~-d~~~~GNHe~d~g~~~l--~~~~~~~~~~-~l~aNv~~~~~~~~~~~~~~ 118 (252)
T cd00845 69 --------------------------LGY-DAVTIGNHEFDYGLDAL--AELYKDANFP-VLSANLYDKDTGTGPPWAKP 118 (252)
T ss_pred --------------------------cCC-CEEeeccccccccHHHH--HHHHHhCCCC-EEEEeeeccCCCCCCCCcCC
Confidence 233 34556999986655432 2344444321 1111000 000000011223
Q ss_pred -EEEeeCCeeEEEEecCCCcHHHHHh-------hhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCcccccccc
Q 004738 170 -ILIRKGSTAVALYGLGNIRDERLNR-------MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (732)
Q Consensus 170 -vll~kG~t~vaLyGLg~irderL~~-------~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~l 241 (732)
.++..++.+|++.|+.......... .+.. ..+.+... .........+.|++.|...... ..+.+.+
T Consensus 119 ~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~D~vIvl~H~g~~~~---~~la~~~ 192 (252)
T cd00845 119 YKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFED--LAEAVAVA-EELLAEGADVIILLSHLGLDDD---EELAEEV 192 (252)
T ss_pred eEEEEECCEEEEEEEeccccceeecCCCcccCceecC--HHHHHHHH-HHHHhCCCCEEEEEeccCccch---HHHHhcC
Confidence 3456778999999986443211100 0011 01111000 0011135679999999875421 0111122
Q ss_pred CCcCCCEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 242 Lp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
.++|+|+.||.|..+..|... .+..++|||+
T Consensus 193 --~giDlvlggH~H~~~~~~~~~--~~~~v~~~g~ 223 (252)
T cd00845 193 --PGIDVILGGHTHHLLEEPEVV--NGTLIVQAGK 223 (252)
T ss_pred --CCccEEEcCCcCcccCCCccc--CCEEEEeCCh
Confidence 579999999999976543232 3567888886
No 37
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.08 E-value=1.2e-09 Score=113.77 Aligned_cols=65 Identities=29% Similarity=0.342 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
+||+++||+|..+.. ..++.+.+.+||+||++||+.+.. ...++.|.+
T Consensus 1 ~rIa~isDiHg~~~~--------------~~~~~l~~~~pD~Vl~~GDi~~~~-------~~~~~~l~~----------- 48 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------------EDIKALHLLQPDLVLFVGDFGNES-------VQLVRAISS----------- 48 (238)
T ss_pred CEEEEEecCCCCchH--------------HHHHHHhccCCCEEEECCCCCcCh-------HHHHHHHHh-----------
Confidence 689999999965321 112355677899999999998642 123333332
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g 133 (732)
...|+|+|.||||....
T Consensus 49 ------------------------l~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 49 ------------------------LPLPKAVILGNHDAWYD 65 (238)
T ss_pred ------------------------CCCCeEEEcCCCccccc
Confidence 24699999999998664
No 38
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.07 E-value=8.5e-10 Score=114.26 Aligned_cols=81 Identities=31% Similarity=0.436 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
|||+|+||+|++. ...+....++.+++.++..++|+||++|||.+... ......+.++|.+
T Consensus 1 ~~i~~isD~H~~~------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~--~~~~~~~~~~l~~----------- 61 (301)
T COG1409 1 MRIAHISDLHLGA------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGE--PEEYRRLKELLAR----------- 61 (301)
T ss_pred CeEEEEecCcccc------cccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCC--HHHHHHHHHHHhh-----------
Confidence 7999999999995 23345667888889988999999999999999843 3334444444442
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV 134 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~ 134 (732)
.....|++++|||||.....
T Consensus 62 ----------------------~~~~~~~~~vpGNHD~~~~~ 81 (301)
T COG1409 62 ----------------------LELPAPVIVVPGNHDARVVN 81 (301)
T ss_pred ----------------------ccCCCceEeeCCCCcCCchH
Confidence 13578999999999987643
No 39
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.03 E-value=1.2e-08 Score=117.03 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=37.0
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH---------hcCCCEEEEcCCCCCC
Q 004738 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---------QKEVDFVLLGGDLFHE 64 (732)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~---------e~~VD~VLlaGDLFh~ 64 (732)
.....++|+++||+|+|..... ...|+.+++... ..+||.|+++||+|+.
T Consensus 239 ~~~~~~~i~~ISDlHlgs~~~~-------~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~ 297 (504)
T PRK04036 239 TKDEKVYAVFISDVHVGSKEFL-------EDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDG 297 (504)
T ss_pred cCCCccEEEEEcccCCCCcchh-------HHHHHHHHHHHhCCCccchhhhhcCCEEEEeCccccc
Confidence 3456689999999999975421 123455555555 7789999999999986
No 40
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.01 E-value=2.5e-09 Score=110.81 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=29.4
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--hcCCCEEEEcCCCCCCC
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--QKEVDFVLLGGDLFHEN 65 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~--e~~VD~VLlaGDLFh~~ 65 (732)
+|+||+|||..... .+.++.|.+.+.... ..++|+|+++||+|+..
T Consensus 2 ~~iSDlHl~~~~~~----~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~ 49 (243)
T cd07386 2 VFISDVHVGSKTFL----EDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGI 49 (243)
T ss_pred EEecccCCCchhhh----HHHHHHHHHHHcCCcccccCccEEEEeCCccccc
Confidence 68999999965432 122334433333221 13679999999999974
No 41
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.98 E-value=2e-09 Score=101.49 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
||+++||+|..+. .....++|+|+++||+++...+ ..+..++++|++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~--~~~~~~~~~l~~ 47 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL--EELQKFLDWLKS 47 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh
Confidence 6999999997743 1234689999999999987643 334445555543
No 42
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.98 E-value=1.9e-09 Score=104.83 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kP 67 (732)
|+++||+|++...... .+...+.+.++|+|+++|||++....
T Consensus 1 ~~~iSDlH~~~~~~~~-----------~~~~~~~~~~~d~li~~GDi~~~~~~ 42 (166)
T cd07404 1 IQYLSDLHLEFEDNLA-----------DLLNFPIAPDADILVLAGDIGYLTDA 42 (166)
T ss_pred CceEccccccCccccc-----------cccccCCCCCCCEEEECCCCCCCcch
Confidence 5799999998753321 11144567899999999999987543
No 43
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.97 E-value=1e-09 Score=108.04 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=59.3
Q ss_pred EEEcCCCCCCCCC----c-hhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcc
Q 004738 16 LVATDCHLGYMEK----D-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 16 Lh~SD~HLG~~e~----d-~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~ 90 (732)
|++||+|||+... + .....+...+++.+++++.+.+||.|+++||+||...+........+.++..
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~--------- 71 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRL--------- 71 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHh---------
Confidence 6899999998642 1 1233344578899999999999999999999999765544332222221111
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~ 132 (732)
...++||++|.||||...
T Consensus 72 ------------------------~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 72 ------------------------LAKDVDVILIRGNHDGGL 89 (172)
T ss_pred ------------------------ccCCCeEEEEcccCccch
Confidence 145789999999999743
No 44
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.95 E-value=1.1e-08 Score=108.09 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=110.4
Q ss_pred cEEEEEcCCCCCCCCCch-----hchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhH-------HHHHHHHH
Q 004738 13 VRILVATDCHLGYMEKDE-----IRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-------LVKAIEIL 79 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~-----~R~~Ds~~aFeeIl~~A~e~~VD~VLl-aGDLFh~~kPs~~t-------l~~~~elL 79 (732)
++|||++|+| |+.+... ....-.+..+..+++..+++++|.|++ +||+|+....+... ....+++|
T Consensus 1 l~il~t~D~H-g~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLH-GNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccc-cceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 5899999999 6543210 001123567788888888889999998 99999864211100 01123333
Q ss_pred HHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCce----EEccce
Q 004738 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLV----NYFGKM 155 (732)
Q Consensus 80 r~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glV----n~FGk~ 155 (732)
+. .+.. ++..||||...+...+. +++...+.- |+....
T Consensus 80 n~-----------------------------------~g~d-~~~lGNHe~d~g~~~l~--~~~~~~~~~~l~aNv~~~~ 121 (277)
T cd07410 80 NA-----------------------------------LGYD-AGTLGNHEFNYGLDYLD--KVIKQANFPVLSANVIDAD 121 (277)
T ss_pred Hh-----------------------------------cCCC-EEeecccCcccCHHHHH--HHHHhCCCCEEEEEEEeCC
Confidence 32 2444 45569999765543322 344433321 211110
Q ss_pred eecCCCccceeEEEE-EEeeC-CeeEEEEecCCCcHHHHH-------hhhcCh-hhHhhcChhhhhhccCCCceEEEEEc
Q 004738 156 VLGGSGVGEITVYPI-LIRKG-STAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLH 225 (732)
Q Consensus 156 ~l~~~~~~~i~i~Pv-ll~kG-~t~vaLyGLg~irderL~-------~~f~~~-~~v~~l~P~~~~~~~~~~~fnILvlH 225 (732)
.+ .-.+.|. +++.+ +.+|++.|+-........ -.|.++ ..++...+.... ..-.+-|++.|
T Consensus 122 ----~~--~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H 192 (277)
T cd07410 122 ----TG--EPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAH 192 (277)
T ss_pred ----CC--CcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEec
Confidence 00 1113453 45677 899999998532110000 001111 011111111111 13468899999
Q ss_pred ccCCCCCCccccc----cccCC--cCCCEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 226 QNRVKTNPKNAIN----EHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 226 qn~~~~~~~~~I~----e~lLp--~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
............+ ..++. .++|+|+.||.|.....+ . ..+..|+++|+
T Consensus 193 ~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~-~--~~~~~v~q~g~ 246 (277)
T cd07410 193 GGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGP-T--VNGVPVVQPGN 246 (277)
T ss_pred CCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccC-C--cCCEEEEcCCh
Confidence 8765321000111 12222 469999999999876432 1 23467888886
No 45
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.95 E-value=3.4e-09 Score=108.69 Aligned_cols=228 Identities=24% Similarity=0.393 Sum_probs=98.4
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
+=|||-+||.|-. ++.++.++..|.+.++|+|+++|||.-....+.. ..++...=|. -||+.-.
T Consensus 5 ~~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e-~~~a~~~~r~---p~k~~i~ 68 (255)
T PF14582_consen 5 VRKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDE-YERAQEEQRE---PDKSEIN 68 (255)
T ss_dssp --EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHH-HHHHHHTT-------THHHH
T ss_pred chhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhH-HHHHhhhccC---cchhhhh
Confidence 4589999998865 6678899999999999999999999854321111 1111100000 0111000
Q ss_pred ee---echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhh----hCCceEEccceeecCCCccc
Q 004738 92 QV---VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS----ACNLVNYFGKMVLGGSGVGE 164 (732)
Q Consensus 92 e~---lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~----~~glVn~FGk~~l~~~~~~~ 164 (732)
+- .+..-.+|.+.++ ..++|+|+||||||.|... .+. +.+. .++..++.+.
T Consensus 69 ~e~~~~~e~~~~ff~~L~---------~~~~p~~~vPG~~Dap~~~-~lr--~a~~~e~v~p~~~~vH~s---------- 126 (255)
T PF14582_consen 69 EEECYDSEALDKFFRILG---------ELGVPVFVVPGNMDAPERF-FLR--EAYNAEIVTPHIHNVHES---------- 126 (255)
T ss_dssp HHHHHHHHHHHHHHHHHH---------CC-SEEEEE--TTS-SHHH-HHH--HHHHCCCC-TTEEE-CTC----------
T ss_pred hhhhhhHHHHHHHHHHHH---------hcCCcEEEecCCCCchHHH-HHH--HHhccceeccceeeeeee----------
Confidence 00 0000012222222 4689999999999998642 111 1111 1222221111
Q ss_pred eeEEEEEEeeCCeeEEEEecCC-C----c--HHHHHhhh-cChhhHhhcChhhhhhccCCCceEEEEEcccC-CCCC---
Q 004738 165 ITVYPILIRKGSTAVALYGLGN-I----R--DERLNRMF-QTPHAVQWMRPEAQEECQVSDWFNILVLHQNR-VKTN--- 232 (732)
Q Consensus 165 i~i~Pvll~kG~t~vaLyGLg~-i----r--derL~~~f-~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~-~~~~--- 232 (732)
+...+| ...+.|+|- + + ...|..-+ .....++++.. ....-.|+++|.+. ...+
T Consensus 127 -----f~~~~g--~y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~e-------lk~~r~IlLfhtpPd~~kg~~h 192 (255)
T PF14582_consen 127 -----FFFWKG--EYLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRE-------LKDYRKILLFHTPPDLHKGLIH 192 (255)
T ss_dssp -----EEEETT--TEEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGG-------CTSSEEEEEESS-BTBCTCTBT
T ss_pred -----ecccCC--cEEEEecCccccCCCccccccccchHHHHHHHHHHHHh-------cccccEEEEEecCCccCCCccc
Confidence 111222 223334431 1 1 11110000 00011233321 23568999999987 2211
Q ss_pred -CccccccccC-CcCCCEEEeCcccccccCCcccCCCCceEecCCCCcccccccCccCCCeEEEEEEeCCeeEEE
Q 004738 233 -PKNAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305 (732)
Q Consensus 233 -~~~~I~e~lL-p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~~~~~ve 305 (732)
+...+. +++ ....++|++||+|+.... ..+ + ...|++|||. .+| .|.+|++.+.++...
T Consensus 193 ~GS~~V~-dlIk~~~P~ivl~Ghihe~~~~-e~l-G-~TlVVNPGsL-----~~G-----~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 193 VGSAAVR-DLIKTYNPDIVLCGHIHESHGK-ESL-G-KTLVVNPGSL-----AEG-----DYAVIDLEQDKVEFG 253 (255)
T ss_dssp TSBHHHH-HHHHHH--SEEEE-SSS-EE---EEE-T-TEEEEE--BG-----GGT-----EEEEEETTTTEEEEE
T ss_pred ccHHHHH-HHHHhcCCcEEEecccccchhh-HHh-C-CEEEecCccc-----ccC-----ceeEEEecccccccC
Confidence 111121 222 345799999999997642 233 2 4689999984 333 699999988876543
No 46
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.90 E-value=6.5e-09 Score=102.15 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=32.2
Q ss_pred EEEcCCCCCCCCCc--hhchhcHHH-HHHHHHHHHHhc--CCCEEEEcCCCCCCCCC
Q 004738 16 LVATDCHLGYMEKD--EIRRHDSFE-AFEEICSIAEQK--EVDFVLLGGDLFHENKP 67 (732)
Q Consensus 16 Lh~SD~HLG~~e~d--~~R~~Ds~~-aFeeIl~~A~e~--~VD~VLlaGDLFh~~kP 67 (732)
.++||+|||+...- +.+...... ..+.+++...+. ++|.|+++|||++...+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~ 58 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA 58 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh
Confidence 57899999985321 011111122 234455555443 79999999999997643
No 47
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.88 E-value=3.2e-09 Score=106.82 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=29.2
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE 64 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~ 64 (732)
+++||+|||...... ...+..++....+.++|.|+++||+||.
T Consensus 1 ~~iSDlHlg~~~~~~------~~~~~~~~~~~~~~~~~~lvl~GDi~d~ 43 (217)
T cd07398 1 LFISDLHLGDGGPAA------DFLLLFLLAALALGEADALYLLGDIFDL 43 (217)
T ss_pred CEeeeecCCCCCCCH------HHHHHHHHhhhccCCCCEEEEeccEEEE
Confidence 579999999765432 1223333332225799999999999985
No 48
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.86 E-value=1.9e-08 Score=105.45 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=108.5
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCChh-HHHHHHHHHHHhccCCCCcc
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRS-TLVKAIEILRRHCLNDRPVQ 90 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD-~VLlaGDLFh~~kPs~~-tl~~~~elLr~l~~gd~p~~ 90 (732)
++|||++|+| +..... ....-.+..+..+++..+++++| ++|.+||+|+....+.. .....++.|+.+
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l-------- 70 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL-------- 70 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc--------
Confidence 5899999999 433211 01112356778888888888888 99999999986522110 001233333321
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEcccee-ecCC--CccceeE
Q 004738 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMV-LGGS--GVGEITV 167 (732)
Q Consensus 91 ~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~-l~~~--~~~~i~i 167 (732)
+. .+++.||||...+...+. .++...+. .+++... .... .+..+.
T Consensus 71 ---------------------------~~-d~~~~GNHefd~g~~~l~--~~~~~~~~-~~L~aNi~~~~~~~~~~~~~- 118 (257)
T cd07406 71 ---------------------------GV-DLACFGNHEFDFGEDQLQ--KRLGESKF-PWLSSNVFDATGGGPLPNGK- 118 (257)
T ss_pred ---------------------------CC-cEEeecccccccCHHHHH--HHHhhCCC-CEEEEEEEECCCCcccCCCC-
Confidence 22 366789999866544322 33443332 1111100 0000 000011
Q ss_pred EEEEEeeCCeeEEEEecCCCcHH-HHH-----hhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCcccccccc
Q 004738 168 YPILIRKGSTAVALYGLGNIRDE-RLN-----RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (732)
Q Consensus 168 ~Pvll~kG~t~vaLyGLg~irde-rL~-----~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~l 241 (732)
..++++.++.+|++.|+-..... .+. -.|.++ ++.++.....-......+-|++.|...... ..+...+
T Consensus 119 ~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d---~~la~~~ 193 (257)
T cd07406 119 ESAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDY--VETARELVDELREQGADLIIALTHMRLPND---KRLAREV 193 (257)
T ss_pred CeEEEEECCeEEEEEEEecccccccccCCCCcceEcCH--HHHHHHHHHHHHhCCCCEEEEEeccCchhh---HHHHHhC
Confidence 12456678899999998543211 000 001111 111111000000123578899999864211 1122222
Q ss_pred CCcCCCEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 242 Lp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
.++|+|+.||.|..+.. .. .+..+++||+
T Consensus 194 --~~iD~IlgGH~H~~~~~--~~--~~t~vv~~g~ 222 (257)
T cd07406 194 --PEIDLILGGHDHEYILV--QV--GGTPIVKSGS 222 (257)
T ss_pred --CCCceEEecccceeEee--eE--CCEEEEeCCc
Confidence 46999999999997632 22 2467888876
No 49
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.83 E-value=8.1e-09 Score=106.81 Aligned_cols=83 Identities=27% Similarity=0.296 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCCCCCch-----hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004738 13 VRILVATDCHLGYMEKDE-----IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~-----~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~ 87 (732)
-+.|++||+|||+...-. ....+..++++++.+++.+.+||.||++||+||...+. .+...+.++|+.
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~~~~~~~~~l~~------ 87 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-LEWRFIREFIEV------ 87 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-HHHHHHHHHHHh------
Confidence 468999999999854311 22235557889999999999999999999999987654 444444455543
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
...++++|+||||..
T Consensus 88 -----------------------------~~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 88 -----------------------------TFRDLILIRGNHDAL 102 (225)
T ss_pred -----------------------------cCCcEEEECCCCCCc
Confidence 235999999999974
No 50
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.80 E-value=5.2e-08 Score=102.40 Aligned_cols=213 Identities=17% Similarity=0.215 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCCCCCCchh----------chhcHHHHHHHHHHHHHhc-CCCEEE-EcCCCCCCCCCChhHHH---HHHH
Q 004738 13 VRILVATDCHLGYMEKDEI----------RRHDSFEAFEEICSIAEQK-EVDFVL-LGGDLFHENKPSRSTLV---KAIE 77 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~----------R~~Ds~~aFeeIl~~A~e~-~VD~VL-laGDLFh~~kPs~~tl~---~~~e 77 (732)
++|||++|+|--+...... ...-.+..+..+++.+++. .+|.|+ .+||+|+....+ .+. ..++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~--~~~~g~~~~~ 78 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEA--LYTRGQAMVD 78 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHH--hhcCChhHHH
Confidence 5899999999876443211 0112367788888888888 999885 599999865322 111 1222
Q ss_pred HHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceee
Q 004738 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL 157 (732)
Q Consensus 78 lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l 157 (732)
+|+ .+++.++.||||...+...+. ..+...+. .+++....
T Consensus 79 ~l~-------------------------------------~~g~da~~GNHefd~g~~~l~--~~~~~~~~-~~l~aN~~ 118 (264)
T cd07411 79 ALN-------------------------------------ALGVDAMVGHWEFTYGPERVR--ELFGRLNW-PFLAANVY 118 (264)
T ss_pred HHH-------------------------------------hhCCeEEecccccccCHHHHH--HHHhhCCC-CEEEEEEE
Confidence 222 144444449999776654332 34444442 11111100
Q ss_pred cCCCccceeEEEE-EEeeCCeeEEEEecCCCcHHHHHh-------hhcChhhHhhcChhhhhhc-cCCCceEEEEEcccC
Q 004738 158 GGSGVGEITVYPI-LIRKGSTAVALYGLGNIRDERLNR-------MFQTPHAVQWMRPEAQEEC-QVSDWFNILVLHQNR 228 (732)
Q Consensus 158 ~~~~~~~i~i~Pv-ll~kG~t~vaLyGLg~irderL~~-------~f~~~~~v~~l~P~~~~~~-~~~~~fnILvlHqn~ 228 (732)
. .......+.|. ++..++.+|+|.|+.......... .|.. .++.+.....+-. .....+-|++.|...
T Consensus 119 ~-~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~iI~l~H~g~ 195 (264)
T cd07411 119 D-DEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI--REEELQEVVVKLRREEGVDVVVLLSHNGL 195 (264)
T ss_pred e-CCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC--HHHHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 0 00011123453 347788999999986542111000 0111 0111111000000 124578999999864
Q ss_pred CCCCCccccccccCCcCCCEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 229 VKTNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 229 ~~~~~~~~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
... ..+.+.+ .++|+|+.||.|.....|... ..+..++|+|+
T Consensus 196 ~~~---~~la~~~--~~iDlilgGH~H~~~~~~~~~-~~~t~v~~~g~ 237 (264)
T cd07411 196 PVD---VELAERV--PGIDVILSGHTHERTPKPIIA-GGGTLVVEAGS 237 (264)
T ss_pred hhh---HHHHhcC--CCCcEEEeCcccccccCcccc-cCCEEEEEcCc
Confidence 311 1121222 469999999999866544211 23467888876
No 51
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.74 E-value=2.9e-07 Score=96.47 Aligned_cols=218 Identities=18% Similarity=0.235 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhH-HHHHHHHHHHhccCCCCcce
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~t-l~~~~elLr~l~~gd~p~~~ 91 (732)
++|||++|+|-.....+. ..-.+..+..+++.++++..+++|.+||+|+....+... ....+++|.
T Consensus 1 i~il~~~D~H~~~~~~~~--~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln----------- 67 (257)
T cd07408 1 ITILHTNDIHGRIDEDDN--NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMN----------- 67 (257)
T ss_pred CEEEEeccCcccccCCCC--ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHH-----------
Confidence 689999999954332211 111244566666666655778999999999864321110 011222222
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeEEEEE
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvl 171 (732)
..++.+++ .||||.-.+...+ ..++...++ -+++...... ..+.-.+.|..
T Consensus 68 ------------------------~~g~d~~~-~GNHefd~G~~~l--~~~~~~~~~-~~l~aNv~~~-~~~~~~~~py~ 118 (257)
T cd07408 68 ------------------------AVGYDAVT-PGNHEFDYGLDRL--KELSKEADF-PFLSANVYDN-DTGKRVFKPYK 118 (257)
T ss_pred ------------------------hcCCcEEc-cccccccCCHHHH--HHHHhhCCC-CEEEEEEEEc-CCCCcccCCEE
Confidence 23556654 6999976554322 233333332 1121111000 00111234543
Q ss_pred -EeeC-CeeEEEEecCCCcH------HHHHh-hhcChhhHhhcChh-hhhhccCCCceEEEEEcccCCCCCCcccccccc
Q 004738 172 -IRKG-STAVALYGLGNIRD------ERLNR-MFQTPHAVQWMRPE-AQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (732)
Q Consensus 172 -l~kG-~t~vaLyGLg~ird------erL~~-~f~~~~~v~~l~P~-~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~l 241 (732)
+..+ +.+|++.|+-...- ..+.. .|.++ ++.++.. ...-......+-|++.|.......+. +-...+
T Consensus 119 i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~~~~~l 195 (257)
T cd07408 119 IKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDP--IEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-WTSTEL 195 (257)
T ss_pred EEEcCCCCEEEEEeecCcCcccccCccccCCcEEecH--HHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-ccHHHH
Confidence 3566 78999999753210 00000 01111 1111111 00000123568899999876543111 000111
Q ss_pred C--CcCCCEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 242 L--PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 242 L--p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
. -.++|+|+.||.|.....+. ....+..++|+|+
T Consensus 196 a~~~~giDvIigGH~H~~~~~~~-~~~~~~~ivq~g~ 231 (257)
T cd07408 196 AANVTGIDLIIDGHSHTTIEIGK-KDGNNVLLTQTGA 231 (257)
T ss_pred HHhCCCceEEEeCCCcccccCcc-cccCCeEEEcCCh
Confidence 1 24699999999999765431 1123467888876
No 52
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.73 E-value=1.8e-07 Score=99.88 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCC
Q 004738 13 VRILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~---~R~~Ds~~aFeeIl~~A~e~~VD-~VLlaGDLFh~~ 65 (732)
++|||++|+| |+..... ....-.+..+..+++.++++.++ ++|.+||+|...
T Consensus 1 i~il~tnD~H-g~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs 56 (288)
T cd07412 1 VQILAINDFH-GRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGAS 56 (288)
T ss_pred CeEEEEeccc-cCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccc
Confidence 5899999999 5433211 01112356777888888777776 889999999643
No 53
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.73 E-value=7.3e-08 Score=86.53 Aligned_cols=69 Identities=32% Similarity=0.495 Sum_probs=48.0
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeec
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lS 95 (732)
++++|+|.+...... ... ...+.+.++|+||++||+++...+........ +..+
T Consensus 1 ~~~gD~h~~~~~~~~---------~~~-~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~---~~~~------------- 54 (131)
T cd00838 1 AVISDIHGNLEALEA---------VLE-AALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA---LALL------------- 54 (131)
T ss_pred CeeecccCCccchHH---------HHH-HHHhcccCCCEEEECCcccCCCCCchHHHHHH---HHHh-------------
Confidence 589999999654311 000 45667899999999999999887765432221 1111
Q ss_pred hhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 004738 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (732)
Q Consensus 96 d~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD 129 (732)
....+|++++.||||
T Consensus 55 -------------------~~~~~~~~~~~GNHD 69 (131)
T cd00838 55 -------------------LLLGIPVYVVPGNHD 69 (131)
T ss_pred -------------------hcCCCCEEEeCCCce
Confidence 256899999999999
No 54
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.65 E-value=6.5e-08 Score=94.45 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=49.8
Q ss_pred EEEcCCCCCCCCCchh--chhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCCh-hHHHHHHHHHHHhccCCCCccee
Q 004738 16 LVATDCHLGYMEKDEI--RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~--R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~-~tl~~~~elLr~l~~gd~p~~~e 92 (732)
+++||+||++...... +-..-+...+.+...+.+.+||+|+++|||||...+.. ......+..+.+.+
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMF--------- 71 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHh---------
Confidence 4689999975432221 00011112223344455679999999999999865532 22223333333321
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
. ...++|+++|+||||..
T Consensus 72 -------------~--------~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 72 -------------G--------HPPDLPLHVVVGNHDIG 89 (156)
T ss_pred -------------c--------cCCCCeEEEEcCCCCcC
Confidence 0 01368999999999974
No 55
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.63 E-value=3.8e-07 Score=97.00 Aligned_cols=199 Identities=17% Similarity=0.223 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCCCCCCchh---------chhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhH-HHHHHHHHHH
Q 004738 13 VRILVATDCHLGYMEKDEI---------RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRR 81 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~---------R~~Ds~~aFeeIl~~A~e~~VD~VLl-aGDLFh~~kPs~~t-l~~~~elLr~ 81 (732)
++|||++|+|--....+.. ...-.+..+..+++.+++..++.|++ +||+|+.+..+... -...+++|+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln- 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN- 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH-
Confidence 5899999999654322110 01113667778888888778886555 99999865322110 011222222
Q ss_pred hccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCC
Q 004738 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG 161 (732)
Q Consensus 82 l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~ 161 (732)
..++.+.++ ||||...+...+. +.+...+ ..+++.-.....+
T Consensus 80 ----------------------------------~~g~D~~~l-GNHefd~G~~~l~--~~~~~~~-~p~l~aNv~~~~~ 121 (281)
T cd07409 80 ----------------------------------LLGYDAMTL-GNHEFDDGVEGLA--PFLNNLK-FPVLSANIDTSNE 121 (281)
T ss_pred ----------------------------------hcCCCEEEe-ccccccCCHHHHH--HHHHhCC-CCEEEEeeecCCC
Confidence 235566655 9999887765432 2333332 1122211100000
Q ss_pred --ccceeEEE-EEEeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhh-----hhhcc-CCCceEEEEEcccCCCCC
Q 004738 162 --VGEITVYP-ILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEA-----QEECQ-VSDWFNILVLHQNRVKTN 232 (732)
Q Consensus 162 --~~~i~i~P-vll~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~-----~~~~~-~~~~fnILvlHqn~~~~~ 232 (732)
...-.+.| .++..++.+|+|.|+-........... ..+.+..|.. ..... ....+-|++.|......
T Consensus 122 ~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~---~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~d- 197 (281)
T cd07409 122 PPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPG---GKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEVD- 197 (281)
T ss_pred ccccccccCCeEEEEECCEEEEEEEEecCcccccccCC---CceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchhH-
Confidence 00111345 445778899999998542211110000 0112211110 00000 12467889999864311
Q ss_pred CccccccccCCcCCCEEEeCcccccc
Q 004738 233 PKNAINEHFLPRFLDFVVWGHEHECL 258 (732)
Q Consensus 233 ~~~~I~e~lLp~~~DyVa~GH~H~~~ 258 (732)
..+.+.+ .++|+|+.||.|..+
T Consensus 198 --~~la~~~--~giD~IiggH~H~~~ 219 (281)
T cd07409 198 --KEIARKV--PGVDVIVGGHSHTFL 219 (281)
T ss_pred --HHHHHcC--CCCcEEEeCCcCccc
Confidence 1122222 469999999999975
No 56
>PLN02533 probable purple acid phosphatase
Probab=98.57 E-value=6.6e-07 Score=100.79 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCc
Q 004738 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~ 89 (732)
...+||++++|+|.+.. . ...++.+.+.++||||++|||.....- ......+++++..+
T Consensus 137 ~~~~~f~v~GDlG~~~~--~-----------~~tl~~i~~~~pD~vl~~GDl~y~~~~-~~~wd~f~~~i~~l------- 195 (427)
T PLN02533 137 KFPIKFAVSGDLGTSEW--T-----------KSTLEHVSKWDYDVFILPGDLSYANFY-QPLWDTFGRLVQPL------- 195 (427)
T ss_pred CCCeEEEEEEeCCCCcc--c-----------HHHHHHHHhcCCCEEEEcCccccccch-HHHHHHHHHHhhhH-------
Confidence 46799999999875421 1 234455567899999999999875421 11112233333321
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 90 ~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
...+|+++++||||..
T Consensus 196 --------------------------~s~~P~m~~~GNHE~~ 211 (427)
T PLN02533 196 --------------------------ASQRPWMVTHGNHELE 211 (427)
T ss_pred --------------------------hhcCceEEeCcccccc
Confidence 2468999999999975
No 57
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.54 E-value=6.4e-06 Score=91.65 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=58.0
Q ss_pred CceEEEEEcccCCCCCC---ccccccccC----CcCCCEEEeCcccccccCCcccCCCCceEecCCC--Ccc--------
Q 004738 217 DWFNILVLHQNRVKTNP---KNAINEHFL----PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS--SVA-------- 279 (732)
Q Consensus 217 ~~fnILvlHqn~~~~~~---~~~I~e~lL----p~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS--~va-------- 279 (732)
..+.|++.|.++...+. ...+...++ ...+|++++||.|..+... ..+ ...+-+|+ -..
T Consensus 213 a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--~~g--t~yIvSGaGs~~~~~~~~~~~ 288 (394)
T PTZ00422 213 ADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVLT--DEG--TAHINCGSGGNSGRKSIMKNS 288 (394)
T ss_pred CCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEec--CCC--ceEEEeCccccccCCCCCCCC
Confidence 45899999999874332 222222222 3579999999999876531 122 23333333 111
Q ss_pred -cccccCccCCCeEEEEEEeCCeeEEEEEECCCCCcEEEEEEE
Q 004738 280 -TSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEII 321 (732)
Q Consensus 280 -tS~~egE~~~Kgv~LLeI~~~~~~ve~IpL~tvRpf~~~eI~ 321 (732)
+-| .....||..+++..+.+.++++.-..-..+....+.
T Consensus 289 ~s~F---~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~ 328 (394)
T PTZ00422 289 KSLF---YSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQP 328 (394)
T ss_pred Ccce---ecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeec
Confidence 112 124578999999999999999853233444444443
No 58
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=1.5e-07 Score=97.44 Aligned_cols=79 Identities=27% Similarity=0.313 Sum_probs=50.7
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC---CCChhHHHHHHHHHHHhccCCCCccee
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~---kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
+++||+|||-.... .-..|.+.++.- ..+.|.|.+.||+||.- .+......++...|+++
T Consensus 1 lFISDlHL~~~~p~------~t~~fl~Fl~~~-a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~---------- 63 (237)
T COG2908 1 LFISDLHLGPKRPA------LTAFFLDFLREE-AAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL---------- 63 (237)
T ss_pred CeeeccccCCCCcH------HHHHHHHHHHhc-cccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH----------
Confidence 57999999954332 123444444332 22669999999999863 22233344555555553
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g 133 (732)
...|.|||.||||||...+
T Consensus 64 ----------------------a~~G~~v~~i~GN~Dfll~ 82 (237)
T COG2908 64 ----------------------ARKGTRVYYIHGNHDFLLG 82 (237)
T ss_pred ----------------------HhcCCeEEEecCchHHHHH
Confidence 2568999999999996554
No 59
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.48 E-value=4.1e-07 Score=90.21 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=55.0
Q ss_pred EEEcCCCCCCCCCch---------hchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChh-HHHHHHHHHHHhccC
Q 004738 16 LVATDCHLGYMEKDE---------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS-TLVKAIEILRRHCLN 85 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~---------~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~-tl~~~~elLr~l~~g 85 (732)
|++||.||+....-+ .+.......++.+-..+.+.+||+|+++|||||...+... ......+.+++..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~-- 78 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIF-- 78 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHh--
Confidence 468999999754321 1222223334444455568899999999999998776542 3333444444321
Q ss_pred CCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004738 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 86 d~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~ 132 (732)
...+ ....++|+++|+||||...
T Consensus 79 --------------------~~~~----~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 79 --------------------FLPS----NGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred --------------------cccc----cccCCceEEEECCccccCC
Confidence 0000 0013789999999999753
No 60
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.47 E-value=5.1e-07 Score=85.41 Aligned_cols=33 Identities=33% Similarity=0.287 Sum_probs=23.2
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF 62 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLF 62 (732)
+++||+| |... .++++... ..++|+|+++||+.
T Consensus 1 ~viSDtH-~~~~-----------~~~~~~~~--~~~~d~ii~~GD~~ 33 (129)
T cd07403 1 LVISDTE-SPAL-----------YSPEIKVR--LEGVDLILSAGDLP 33 (129)
T ss_pred Ceecccc-Cccc-----------cchHHHhh--CCCCCEEEECCCCC
Confidence 5789999 5321 23444432 68999999999974
No 61
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.46 E-value=1.1e-06 Score=92.74 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=36.2
Q ss_pred HhcCCCEEEEcCCCCCCCCCChhH-HHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcC
Q 004738 48 EQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (732)
Q Consensus 48 ~e~~VD~VLlaGDLFh~~kPs~~t-l~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~G 126 (732)
...+||+||++|||||..+..... .....+.+.+. |..+ ...+||++|+|
T Consensus 42 ~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i----------------------~~~~-------~~~~pv~~VpG 92 (257)
T cd08163 42 KQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRI----------------------FDPS-------PGRKMVESLPG 92 (257)
T ss_pred HhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHH----------------------hcCC-------CccceEEEeCC
Confidence 346899999999999987754321 11222333322 1111 23589999999
Q ss_pred CCCCCCC
Q 004738 127 NHDDPAG 133 (732)
Q Consensus 127 NHD~p~g 133 (732)
|||.+.+
T Consensus 93 NHDig~~ 99 (257)
T cd08163 93 NHDIGFG 99 (257)
T ss_pred CcccCCC
Confidence 9998654
No 62
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.45 E-value=1.9e-06 Score=93.03 Aligned_cols=105 Identities=21% Similarity=0.392 Sum_probs=63.0
Q ss_pred CcCCCCccEEEEEcCCCCCCCCC----chhchh-c---HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHH
Q 004738 6 REDIANTVRILVATDCHLGYMEK----DEIRRH-D---SFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIE 77 (732)
Q Consensus 6 ~~~~~~~mRILh~SD~HLG~~e~----d~~R~~-D---s~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~e 77 (732)
+....+++||+.+||+|+|.... |....+ + -.+|-.-+=+....++||+|+++||+..... ... +..
T Consensus 47 r~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~-t~D----a~~ 121 (379)
T KOG1432|consen 47 RFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHS-TQD----AAT 121 (379)
T ss_pred eecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccc-cHh----HHH
Confidence 34567899999999999998621 111111 1 1233333334456789999999999887632 222 112
Q ss_pred HHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhh
Q 004738 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDIL 143 (732)
Q Consensus 78 lLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL 143 (732)
.|.+. +. |-+.-+||..++-||||+.+....+..++++
T Consensus 122 sl~kA----------------------va------P~I~~~IPwA~~lGNHDdes~ltr~ql~~~i 159 (379)
T KOG1432|consen 122 SLMKA----------------------VA------PAIDRKIPWAAVLGNHDDESDLTRLQLMKFI 159 (379)
T ss_pred HHHHH----------------------hh------hHhhcCCCeEEEecccccccccCHHHHHHHH
Confidence 22221 10 2246799999999999998755433333333
No 63
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.2e-06 Score=88.85 Aligned_cols=243 Identities=22% Similarity=0.363 Sum_probs=125.6
Q ss_pred cCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC-ChhHHHHHHHHHHHhccC
Q 004738 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP-SRSTLVKAIEILRRHCLN 85 (732)
Q Consensus 7 ~~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kP-s~~tl~~~~elLr~l~~g 85 (732)
..++..++||++.||=.--..+ .+ +.-.++-+++.+.++||||-.||=|-.+-+ +..
T Consensus 38 ~~~dgslsflvvGDwGr~g~~n------qs-~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~--------------- 95 (336)
T KOG2679|consen 38 AKSDGSLSFLVVGDWGRRGSFN------QS-QVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSEN--------------- 95 (336)
T ss_pred CCCCCceEEEEEcccccCCchh------HH-HHHHHHHhHHHhccceEEEecCCcccccCCCCCC---------------
Confidence 3466889999999996321110 01 122345567889999999999996544332 110
Q ss_pred CCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCC-chHHHhhhh--------------CCceE
Q 004738 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN-LSAVDILSA--------------CNLVN 150 (732)
Q Consensus 86 d~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~-lsaldiL~~--------------~glVn 150 (732)
.-+|+..|..| |.+|-+.. |+|.|.||||....... +++ +|.. +..|.
T Consensus 96 ------------Dp~Fq~sF~nI-YT~pSLQk--pWy~vlGNHDyrGnV~AQls~--~l~~~d~RW~c~rsf~~~ae~ve 158 (336)
T KOG2679|consen 96 ------------DPRFQDSFENI-YTAPSLQK--PWYSVLGNHDYRGNVEAQLSP--VLRKIDKRWICPRSFYVDAEIVE 158 (336)
T ss_pred ------------ChhHHhhhhhc-ccCccccc--chhhhccCccccCchhhhhhH--HHHhhccceecccHHhhcceeee
Confidence 12355556555 66665544 99999999998643221 221 1221 11222
Q ss_pred EccceeecCCCccceeEEEEE-----EeeCCeeEEEEecCCCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEc
Q 004738 151 YFGKMVLGGSGVGEITVYPIL-----IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLH 225 (732)
Q Consensus 151 ~FGk~~l~~~~~~~i~i~Pvl-----l~kG~t~vaLyGLg~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlH 225 (732)
.|+. .+.|.. +..+ .+|-..-.. .|. .+.+ ..+.|+.-...+ ....+.|++.|
T Consensus 159 ~f~v-----------~~~~f~~d~~~~~~~----~~ydw~~v~-PR~-~~~~--~~l~~le~~L~~---S~a~wkiVvGH 216 (336)
T KOG2679|consen 159 MFFV-----------DTTPFMDDTFTLCTD----DVYDWRGVL-PRV-KYLR--ALLSWLEVALKA---SRAKWKIVVGH 216 (336)
T ss_pred eecc-----------ccccchhhheecccc----cccccccCC-hHH-HHHH--HHHHHHHHHHHH---hhcceEEEecc
Confidence 2221 111211 1100 011111111 121 1111 123444433322 34678999999
Q ss_pred ccCCC---CCCccccccccCC----cCCCEEEeCcccccccCCcccCCCCceEecCCCCcccc------cccCc----cC
Q 004738 226 QNRVK---TNPKNAINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATS------LIEGE----SK 288 (732)
Q Consensus 226 qn~~~---~~~~~~I~e~lLp----~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~vatS------~~egE----~~ 288 (732)
.++.. |++...+..+++| .++|+.+.||-|.-+-......+.+|.+.-.||-.-.+ +.+++ -.
T Consensus 217 h~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~Yd 296 (336)
T KOG2679|consen 217 HPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYD 296 (336)
T ss_pred cceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccChhheEEeeC
Confidence 98753 5666666555554 57999999999975433110111222222333321111 11111 13
Q ss_pred CCeEEEEEEeCCeeEEEEEECC
Q 004738 289 PKHVLLLEIKENQYRPTKIPLT 310 (732)
Q Consensus 289 ~Kgv~LLeI~~~~~~ve~IpL~ 310 (732)
.+|+.-++|...+.++.++...
T Consensus 297 gqGfmsv~is~~e~~vvfyD~~ 318 (336)
T KOG2679|consen 297 GQGFMSVEISHSEARVVFYDVS 318 (336)
T ss_pred CCceEEEEEecceeEEEEEecc
Confidence 4588888888777777776543
No 64
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.43 E-value=9.2e-06 Score=86.79 Aligned_cols=199 Identities=20% Similarity=0.284 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----CC-CEEEEcCCCCCCCCCChhHHH---HHHHHHHHhcc
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHENKPSRSTLV---KAIEILRRHCL 84 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~V-D~VLlaGDLFh~~kPs~~tl~---~~~elLr~l~~ 84 (732)
++|||++|+|--....+.. .-.+..+..+++.++++ ++ -++|-+||+|.....+ .+. ..+++|+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~--~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~--~~~~g~~~~~~~n---- 72 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG--EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPES--DLQDAEPDFRGMN---- 72 (285)
T ss_pred CEEEEEcccccccccCCCC--CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhH--HhcCcchHHHHHH----
Confidence 5899999999765433211 11234445555555543 33 4788999999654221 111 1122222
Q ss_pred CCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccc
Q 004738 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (732)
Q Consensus 85 gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~ 164 (732)
..++-+.++ ||||--.|...+. .++...++ -+++.-..... +.
T Consensus 73 -------------------------------~~g~Da~~~-GNHEfD~G~~~L~--~~~~~~~f-p~l~aNv~~~~--g~ 115 (285)
T cd07405 73 -------------------------------LVGYDAMAV-GNHEFDNPLEVLR--QQMKWANF-PLLSANIYQES--GE 115 (285)
T ss_pred -------------------------------hhCCcEEee-cccccccCHHHHH--HHHhhCCC-CEEEEEEEecC--CC
Confidence 134555555 9999877765432 22222221 11111100000 11
Q ss_pred eeEEE-EEEeeCCeeEEEEecCCCcHHHHHh-------hhcCh-hhHhhcChhhhhhccCCCceEEEEEcccCCCCC---
Q 004738 165 ITVYP-ILIRKGSTAVALYGLGNIRDERLNR-------MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN--- 232 (732)
Q Consensus 165 i~i~P-vll~kG~t~vaLyGLg~irderL~~-------~f~~~-~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~--- 232 (732)
..+.| +++..++.+|+|.|+-......+.. .|.++ ..++.+.++... ....+-|++.|.......
T Consensus 116 ~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~---~~~D~VI~lsH~G~~~~~~~~ 192 (285)
T cd07405 116 RLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQ---EKPDIVIAATHMGHYDNGEHG 192 (285)
T ss_pred CccCCeEEEEECCEEEEEEEecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecccccCCcccc
Confidence 11345 3456788999999985432111100 01110 000111111111 135688999998764221
Q ss_pred ---Ccc-ccccccCCcCCCEEEeCccccccc
Q 004738 233 ---PKN-AINEHFLPRFLDFVVWGHEHECLI 259 (732)
Q Consensus 233 ---~~~-~I~e~lLp~~~DyVa~GH~H~~~i 259 (732)
+.. .+...+...++|+|+.||.|....
T Consensus 193 ~~~~~~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 193 SNAPGDVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred ccCchHHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 000 111222235799999999999763
No 65
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.37 E-value=4.2e-06 Score=104.82 Aligned_cols=208 Identities=19% Similarity=0.226 Sum_probs=107.8
Q ss_pred CCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCCCCChhH-HHHHHHHHHHhccCC
Q 004738 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRRHCLND 86 (732)
Q Consensus 9 ~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLl-aGDLFh~~kPs~~t-l~~~~elLr~l~~gd 86 (732)
+...++|||++|+| |... .+..+..+++..++.++|.|++ +||+|+..-.+... ....+++|+.
T Consensus 657 ~~~~l~Il~~nD~H-g~l~--------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~----- 722 (1163)
T PRK09419 657 DNWELTILHTNDFH-GHLD--------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKE----- 722 (1163)
T ss_pred CceEEEEEEEeecc-cCCC--------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhC-----
Confidence 34559999999999 4432 2445777788888889999888 99999865222100 1122333321
Q ss_pred CCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCC------------c----eE
Q 004738 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN------------L----VN 150 (732)
Q Consensus 87 ~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~g------------l----Vn 150 (732)
.++ -+++.||||...+...+ ...+...+ + -|
T Consensus 723 ------------------------------lg~-d~~~~GNHEfd~g~~~l--~~~l~~~~~~~~~~~~~~~~fp~l~aN 769 (1163)
T PRK09419 723 ------------------------------MGY-DASTFGNHEFDWGPDVL--PDWLKGGGDPKNRHQFEKPDFPFVASN 769 (1163)
T ss_pred ------------------------------cCC-CEEEecccccccChHHH--HHHHHhcccccccccccCCCCCEEEEE
Confidence 122 25589999987665433 23444332 1 12
Q ss_pred EccceeecCCCccce-eEEEE-EEeeCCeeEEEEecCCCcH------HHHH-hhhcCh-hhHhhcChhhhhhccCCCceE
Q 004738 151 YFGKMVLGGSGVGEI-TVYPI-LIRKGSTAVALYGLGNIRD------ERLN-RMFQTP-HAVQWMRPEAQEECQVSDWFN 220 (732)
Q Consensus 151 ~FGk~~l~~~~~~~i-~i~Pv-ll~kG~t~vaLyGLg~ird------erL~-~~f~~~-~~v~~l~P~~~~~~~~~~~fn 220 (732)
++.. .++ ... .+.|. ++..++.+|+|.|+-...- ..+. -.|.++ ..++.+.++... ...-.+-
T Consensus 770 v~~~----~~~-~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~--~~~~D~V 842 (1163)
T PRK09419 770 IYVK----KTG-KLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKE--KEKVDAI 842 (1163)
T ss_pred EEeC----CCC-ccccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHh--hcCCCEE
Confidence 1111 000 011 12343 3467889999999842210 0000 011111 001111111110 0134677
Q ss_pred EEEEcccCCCCCC--cc---ccccccCCcCCCEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 221 ILVLHQNRVKTNP--KN---AINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 221 ILvlHqn~~~~~~--~~---~I~e~lLp~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
|++.|.....-.. .. .+.+ -+ .++|+|+.||.|..... .+ .+..|+++|+
T Consensus 843 V~LsH~G~~~d~~~~~~~~~~lA~-~v-~gIDvIigGHsH~~~~~--~v--~~~~ivqag~ 897 (1163)
T PRK09419 843 IALTHLGSNQDRTTGEITGLELAK-KV-KGVDAIISAHTHTLVDK--VV--NGTPVVQAYK 897 (1163)
T ss_pred EEEecCCccccccccccHHHHHHH-hC-CCCCEEEeCCCCccccc--cC--CCEEEEeCCh
Confidence 9999987542210 00 0111 12 35999999999997542 22 2467888886
No 66
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.34 E-value=7.8e-06 Score=83.05 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=19.7
Q ss_pred HhcCCCEEEEcCCCCCCCCCChhHH
Q 004738 48 EQKEVDFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 48 ~e~~VD~VLlaGDLFh~~kPs~~tl 72 (732)
.-.+||.|++.||||++.+.+-+..
T Consensus 41 ~~l~Pd~V~fLGDLfd~~w~~D~ef 65 (193)
T cd08164 41 FWLKPDAVVVLGDLFSSQWIDDEEF 65 (193)
T ss_pred HhcCCCEEEEeccccCCCcccHHHH
Confidence 4569999999999999876655443
No 67
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.25 E-value=2.2e-06 Score=89.17 Aligned_cols=57 Identities=32% Similarity=0.325 Sum_probs=40.4
Q ss_pred ccEEEEEcCCCCCCCCCchhch-----hcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 004738 12 TVRILVATDCHLGYMEKDEIRR-----HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS 68 (732)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~-----~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs 68 (732)
.-+.|++||+||||...-..++ .+.-++...+-.++..++|+.|++.||++|+-.++
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~ 80 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKS 80 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCcc
Confidence 4578999999999965322121 12233344444478899999999999999997764
No 68
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.19 E-value=4.8e-06 Score=88.56 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=29.1
Q ss_pred hcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCC
Q 004738 34 HDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKP 67 (732)
Q Consensus 34 ~Ds~~aFeeIl~~A~e~--~VD~VLlaGDLFh~~kP 67 (732)
+-.+..++.+++.+++. ++||||++||+.+....
T Consensus 49 D~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~ 84 (296)
T cd00842 49 DSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVD 84 (296)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCch
Confidence 33488999999999988 99999999999977654
No 69
>PHA02239 putative protein phosphatase
Probab=98.09 E-value=8.7e-06 Score=84.99 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=39.4
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCCCChhHHHHHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIE 77 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~VLlaGDLFh~~kPs~~tl~~~~e 77 (732)
|||++++|+|.. +..|.++++.+... ..|.|++.||++|....+..++...++
T Consensus 1 m~~~~IsDIHG~------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGE------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCC------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH
Confidence 799999999942 44688888887543 369999999999988666654444333
No 70
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.00 E-value=0.00038 Score=80.28 Aligned_cols=237 Identities=19% Similarity=0.208 Sum_probs=117.8
Q ss_pred CcCCCCccEEEEEcCCCCCCCCCchhch---hcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChh--HHHHHHHHH
Q 004738 6 REDIANTVRILVATDCHLGYMEKDEIRR---HDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRS--TLVKAIEIL 79 (732)
Q Consensus 6 ~~~~~~~mRILh~SD~HLG~~e~d~~R~---~Ds~~aFeeIl~~A~e~~V-D~VLlaGDLFh~~kPs~~--tl~~~~elL 79 (732)
.......++|||++|+|-.....+.... .-.+.....+++.++++.. -++|.+||+|+.+.++.. -....+++|
T Consensus 20 ~~~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~m 99 (517)
T COG0737 20 AAAETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL 99 (517)
T ss_pred cccCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHH
Confidence 3445677999999999987653221111 1234444555666665555 568999999998655432 012233333
Q ss_pred HHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCc----eEEccce
Q 004738 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKM 155 (732)
Q Consensus 80 r~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~gl----Vn~FGk~ 155 (732)
..+ +.- ++.-|||+--.+.+.+. +.+..... -|++..
T Consensus 100 N~m-----------------------------------~yD-a~tiGNHEFd~g~~~l~--~~~~~~~fp~l~aNv~~~- 140 (517)
T COG0737 100 NAL-----------------------------------GYD-AMTLGNHEFDYGLEALA--RLLDEAKFPVLSANVYDK- 140 (517)
T ss_pred hhc-----------------------------------CCc-EEeecccccccCHHHHH--HHHhccCCceEEeeeEec-
Confidence 321 222 35567999877754332 22222211 122211
Q ss_pred eecCCCccceeEEEE-EEeeCCeeEEEEecC--CCcHHHHHh-----hhcCh-hhHhhcChhhhhhccCCCceEEEEEcc
Q 004738 156 VLGGSGVGEITVYPI-LIRKGSTAVALYGLG--NIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQ 226 (732)
Q Consensus 156 ~l~~~~~~~i~i~Pv-ll~kG~t~vaLyGLg--~irderL~~-----~f~~~-~~v~~l~P~~~~~~~~~~~fnILvlHq 226 (732)
......-+.|. ++..++.+|++.|+- .+.-..... .|.+. ..++...++... ..-..-|++.|.
T Consensus 141 ----~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~---~~vD~iI~LsH~ 213 (517)
T COG0737 141 ----NSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKG---EGVDVIIALSHL 213 (517)
T ss_pred ----CCCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHh---cCCCEEEEEecc
Confidence 01111123453 446788999999975 222111111 12211 011111122111 114688999998
Q ss_pred cCCCCCCc-ccccc--ccCCcCCCEEEeCcccccccCCccc-CCCCceEecCCCCcccccccCccCCCeEEEEEEeC
Q 004738 227 NRVKTNPK-NAINE--HFLPRFLDFVVWGHEHECLIDPQEV-PGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKE 299 (732)
Q Consensus 227 n~~~~~~~-~~I~e--~lLp~~~DyVa~GH~H~~~i~Pq~~-~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~ 299 (732)
....-... ...+. ......+|.++.||.|.-+..+... ...+..++|+|+ ..|.++.|+|.-
T Consensus 214 G~~~d~~~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~-----------~gk~vG~~di~~ 279 (517)
T COG0737 214 GIEDDLELASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGE-----------YGKYVGVLDITF 279 (517)
T ss_pred CcCccccccccccccccccccCcceEeccCCcccccCCcccCccCCEEEEccCh-----------hhCceeEEEEEE
Confidence 76532110 00000 0011239999999999654332210 112356777765 245666677654
No 71
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.98 E-value=0.0001 Score=79.02 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=33.1
Q ss_pred CCceEEEEEcccCCCCCCc----cccccccCCcCCC-EEEeCcccccccCCcccCCCCceEecCCC
Q 004738 216 SDWFNILVLHQNRVKTNPK----NAINEHFLPRFLD-FVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 216 ~~~fnILvlHqn~~~~~~~----~~I~e~lLp~~~D-yVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
.-.+-|++.|.....-... ..+. ..+| ++| +++.||.|.....+ .. .+..++|||+
T Consensus 187 ~~DvIIvlsH~G~~~d~~~~~~~~~la-~~~~-~id~~Ii~GHsH~~~~~~--~~-~~~~ivq~G~ 247 (282)
T cd07407 187 DVDLILVLGHMPVRDDAEFKVLHDAIR-KIFP-DTPIQFLGGHSHVRDFTQ--YD-SSSTGLESGR 247 (282)
T ss_pred CCCEEEEEeCCCCCCCccHHHHHHHHH-HhCC-CCCEEEEeCCccccccee--cc-CcEEEEeccc
Confidence 3568899999876532110 0111 1133 366 79999999764322 22 2467888886
No 72
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.97 E-value=8e-05 Score=86.54 Aligned_cols=206 Identities=18% Similarity=0.265 Sum_probs=99.4
Q ss_pred cCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----CC-CEEEEcCCCCCCCCCChhHHH---HHHHH
Q 004738 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHENKPSRSTLV---KAIEI 78 (732)
Q Consensus 7 ~~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~V-D~VLlaGDLFh~~kPs~~tl~---~~~el 78 (732)
....-.+.|||++|+|--+...+. ..-.+..+..+++..+++ ++ -++|.+||+|... | ...+. ..+++
T Consensus 29 ~~~~~~ltil~tnD~Hg~~~~~~~--~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs-~-~s~~~~g~~~i~~ 104 (551)
T PRK09558 29 KDKTYKITILHTNDHHGHFWRNEY--GEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV-P-ESDLQDAEPDFRG 104 (551)
T ss_pred cCCceEEEEEEecccCCCcccccc--CCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce-E-hhhhcCCchhHHH
Confidence 344567999999999976543211 011355555666655532 33 4788899999864 2 11121 11222
Q ss_pred HHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeec
Q 004738 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLG 158 (732)
Q Consensus 79 Lr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~ 158 (732)
|+ ..++-+.++ ||||--.|...+. .++..+.+ .++..-...
T Consensus 105 mN-----------------------------------~~g~Da~tl-GNHEFD~G~~~L~--~~~~~a~f-p~l~aNv~~ 145 (551)
T PRK09558 105 MN-----------------------------------LIGYDAMAV-GNHEFDNPLSVLR--KQEKWAKF-PFLSANIYQ 145 (551)
T ss_pred Hh-----------------------------------cCCCCEEcc-cccccCcCHHHHH--HhhccCCC-CEEEEEEEE
Confidence 22 235555554 9999877755332 22322221 111111000
Q ss_pred CCCccceeEEEEE-EeeCCeeEEEEecCCCcHHHH------Hh-hhcCh-hhHhhcChhhhhhccCCCceEEEEEcccCC
Q 004738 159 GSGVGEITVYPIL-IRKGSTAVALYGLGNIRDERL------NR-MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (732)
Q Consensus 159 ~~~~~~i~i~Pvl-l~kG~t~vaLyGLg~irderL------~~-~f~~~-~~v~~l~P~~~~~~~~~~~fnILvlHqn~~ 229 (732)
...+...+.|.. ++.++.+|++.|+-......+ .. .|.++ ..++.+.++..+ ...-.+-|++.|....
T Consensus 146 -~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~--~~~~D~IV~LsH~G~~ 222 (551)
T PRK09558 146 -KSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQ--TEKPDVIIALTHMGHY 222 (551)
T ss_pred -CCCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHh--ccCCCEEEEEeccccc
Confidence 000111234543 467889999999843211111 00 11111 001111111110 0135678999998764
Q ss_pred CCC-Cccccc-----cccCC-cCCCEEEeCcccccc
Q 004738 230 KTN-PKNAIN-----EHFLP-RFLDFVVWGHEHECL 258 (732)
Q Consensus 230 ~~~-~~~~I~-----e~lLp-~~~DyVa~GH~H~~~ 258 (732)
... .....+ ..-++ .++|+|+.||.|...
T Consensus 223 ~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 223 DDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred cCCccCCCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 211 000011 11123 479999999999864
No 73
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.95 E-value=2.5e-05 Score=87.92 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=38.9
Q ss_pred CCcCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHH--HhcCCCEEEEcCCCCCC
Q 004738 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIA--EQKEVDFVLLGGDLFHE 64 (732)
Q Consensus 5 ~~~~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A--~e~~VD~VLlaGDLFh~ 64 (732)
......+.++.++++|+|.|..+. ..+.|..|-+.+..- ...+|-.+++|||+.|.
T Consensus 218 ~~~~~~e~v~v~~isDih~GSk~F----~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDG 275 (481)
T COG1311 218 LNNTGDERVYVALISDIHRGSKEF----LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDG 275 (481)
T ss_pred CCCCCCcceEEEEEeeeecccHHH----HHHHHHHHHHHhcCCcccccceEEEEEecccccc
Confidence 344556778999999999998764 234455553333222 45678999999999995
No 74
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.87 E-value=0.0001 Score=78.25 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.2
Q ss_pred CCCCcEEEEcCCCCCCC
Q 004738 116 NVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 116 n~~IPVf~I~GNHD~p~ 132 (732)
.+.+|+++|.||||.+.
T Consensus 71 ~~p~~t~fi~GNHE~~~ 87 (262)
T cd00844 71 KAPILTIFIGGNHEASN 87 (262)
T ss_pred cCCeeEEEECCCCCCHH
Confidence 46889999999999753
No 75
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.87 E-value=0.00025 Score=77.11 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C-CCEEEEcCCCCCCC
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHEN 65 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~-VD~VLlaGDLFh~~ 65 (732)
++|||++|+|--+.... .+..+..+++..+++ . --++|.+||+|...
T Consensus 1 l~IlhtnD~Hg~~~~~g------g~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs 52 (313)
T cd08162 1 LQLLHTSDGESGLLAED------DAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPG 52 (313)
T ss_pred CeEEEecccccCccccC------CHHHHHHHHHHHHHhhhccCCCeEEEecCccccCc
Confidence 58999999997653221 133444455554433 3 34889999999864
No 76
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.85 E-value=2.9e-05 Score=82.95 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
|++++++|+|-. +.+|+.+++.+. ..++|.|+++|||++...-|. .++++|+++
T Consensus 1 M~~~vIGDIHG~------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~----~vl~~l~~l--------- 55 (275)
T PRK00166 1 MATYAIGDIQGC------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSL----EVLRFVKSL--------- 55 (275)
T ss_pred CcEEEEEccCCC------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHH----HHHHHHHhc---------
Confidence 789999999965 557888888764 357999999999999874443 355555432
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
+.+|++|.||||..
T Consensus 56 --------------------------~~~~~~VlGNHD~~ 69 (275)
T PRK00166 56 --------------------------GDSAVTVLGNHDLH 69 (275)
T ss_pred --------------------------CCCeEEEecChhHH
Confidence 45789999999973
No 77
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.82 E-value=0.00026 Score=85.28 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=37.0
Q ss_pred CCccEEEEEcCCCCCCCCCchh--c--hhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKDEI--R--RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~--R--~~Ds~~aFeeIl~~A~e~~V-D~VLlaGDLFh~~ 65 (732)
.-.++|||++|+|--...++.. + ..-.+..+-.+++.++++.. -++|.+||+|..+
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGs 97 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGT 97 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCc
Confidence 4579999999999765443211 0 11135556667777776654 3788899999864
No 78
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.81 E-value=7.2e-05 Score=76.20 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.1
Q ss_pred HHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEc
Q 004738 46 IAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIH 125 (732)
Q Consensus 46 ~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~ 125 (732)
.....+||+|+++|||||....+. -.+..+.++++. +-|. ...++|+++|+
T Consensus 37 a~~~l~PD~Vi~lGDL~D~G~~~~--~~e~~e~l~Rf~-------------------~If~--------~~~~~~~~~Vp 87 (195)
T cd08166 37 ALNFVQPDIVIFLGDLMDEGSIAN--DDEYYSYVQRFI-------------------NIFE--------VPNGTKIIYLP 87 (195)
T ss_pred HHhccCCCEEEEeccccCCCCCCC--HHHHHHHHHHHH-------------------HHhc--------CCCCCcEEEEC
Confidence 345568999999999999986543 234555555542 1121 13479999999
Q ss_pred CCCCCC
Q 004738 126 GNHDDP 131 (732)
Q Consensus 126 GNHD~p 131 (732)
||||..
T Consensus 88 GNHDIG 93 (195)
T cd08166 88 GDNDIG 93 (195)
T ss_pred CCCCcC
Confidence 999964
No 79
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.80 E-value=4.4e-05 Score=78.10 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=51.7
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--------hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--------QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~--------e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~ 87 (732)
++++|+|-. +.+|+++++.+. ..+.|.|++.||++|...-+.. ++++|.++..
T Consensus 1 ~vi~DIHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~----vl~~l~~l~~--- 61 (208)
T cd07425 1 VAIGDLHGD------------LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIE----ILWLLYKLEQ--- 61 (208)
T ss_pred CEEeCccCC------------HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHH----HHHHHHHHHH---
Confidence 468999987 568899998765 4579999999999998754544 4444444310
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
. . ...+.+|++|.||||..
T Consensus 62 ----------------~---~------~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 62 ----------------E---A------AKAGGKVHFLLGNHELM 80 (208)
T ss_pred ----------------H---H------HhcCCeEEEeeCCCcHH
Confidence 0 0 13468999999999964
No 80
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.78 E-value=0.0011 Score=80.20 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCccEEEEEcCCCCCCCCCchh--ch--hcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKDEI--RR--HDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~--R~--~Ds~~aFeeIl~~A~e~~VD-~VLlaGDLFh~~ 65 (732)
.-.++|||++|+|--...++.. +. .-.+..+-.+++.++++.+. ++|.+||+|..+
T Consensus 113 ~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGS 173 (814)
T PRK11907 113 TVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGT 173 (814)
T ss_pred ceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 4469999999999764433211 11 11345556677777766554 688899999875
No 81
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.78 E-value=0.00038 Score=87.62 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=39.4
Q ss_pred CccEEEEEcCCCCCCCCCchh--c--hhcHHHHHHHHHHHHHhcCCCEEEE-cCCCCCCC
Q 004738 11 NTVRILVATDCHLGYMEKDEI--R--RHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHEN 65 (732)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~--R--~~Ds~~aFeeIl~~A~e~~VD~VLl-aGDLFh~~ 65 (732)
..++|||++|+|-....++.. . ..-.+..+..+++.++++.++.||+ +||+|..+
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs 99 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGN 99 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCC
Confidence 469999999999765433210 0 1113566778888888888887777 99999865
No 82
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.77 E-value=0.00029 Score=69.14 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc---C-CCEEEEcCCCCCCCC
Q 004738 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK---E-VDFVLLGGDLFHENK 66 (732)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~---~-VD~VLlaGDLFh~~k 66 (732)
.|..|-++||+|+|...--..+..+.+.-+++++ +++=+ + =|.|.+.|||--..+
T Consensus 2 sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vi-l~N~nntv~p~D~lwhLGDl~~~~n 60 (186)
T COG4186 2 SMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVI-LSNWNNTVGPDDVLWHLGDLSSGAN 60 (186)
T ss_pred ceeEEEEecccccCCcceeecCCCCCHHHHhHHH-HHhHHhcCCccceEEEecccccccc
Confidence 4567889999999976543334444555666554 22222 2 389999999975543
No 83
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.77 E-value=0.0024 Score=76.01 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=37.0
Q ss_pred CCccEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~----~R~~Ds~~aFeeIl~~A~e~~VD-~VLlaGDLFh~~ 65 (732)
.-.++|||++|+|--...++. ....-.+..+-.+++.++++... ++|-+||+|..+
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGs 83 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGS 83 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCc
Confidence 457999999999976443321 01111345566777777766543 678899999865
No 84
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.75 E-value=0.00028 Score=82.12 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCCCCCchh----c-----hhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 004738 13 VRILVATDCHLGYMEKDEI----R-----RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~----R-----~~Ds~~aFeeIl~~A~e~~V-D~VLlaGDLFh~~ 65 (732)
++|||++|+|--....+.. . ..-.+..+..+++..+++.+ -++|.+||+|...
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs 63 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGT 63 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCc
Confidence 5899999999654322110 0 01135666777777765555 4778999999864
No 85
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.70 E-value=0.0022 Score=68.18 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----------hcCCCEEEEcCCCCCCCC
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----------QKEVDFVLLGGDLFHENK 66 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-----------e~~VD~VLlaGDLFh~~k 66 (732)
+|+++||+|+|..... ...++.| ++... ..++-.||+|||+++...
T Consensus 1 ~i~~vSgL~ig~~~~~----~~~l~ll---~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~ 57 (257)
T cd07387 1 YIALVSGLGLGGNAES----SLSLQLL---VDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKST 57 (257)
T ss_pred CEEEEcccccCCCccc----hHHHHHH---HHHhcCCCCCccccccccceEEEEEECCcccccc
Confidence 4889999999976332 2233344 33332 345668999999999653
No 86
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.68 E-value=0.00094 Score=79.03 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCC
Q 004738 12 TVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (732)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~----~R~~Ds~~aFeeIl~~A~e~~V-D~VLlaGDLFh~~ 65 (732)
.++|||++|+|--...++. ....-.+..+-.+++.++++.. -++|-+||+|..+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGs 60 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGS 60 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4899999999976544321 0011134556667777766543 4678899999865
No 87
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.62 E-value=0.00032 Score=78.27 Aligned_cols=99 Identities=24% Similarity=0.351 Sum_probs=62.5
Q ss_pred CCcCCCCccEEEEEcCCCC-CCC---CC-chh--chhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCC-CCChhHHHHH
Q 004738 5 PREDIANTVRILVATDCHL-GYM---EK-DEI--RRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHEN-KPSRSTLVKA 75 (732)
Q Consensus 5 ~~~~~~~~mRILh~SD~HL-G~~---e~-d~~--R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~-kPs~~tl~~~ 75 (732)
+....++.+||+.+||.|| |-. .. ... -+.|.+ +......+. -.+||.+++.|||||+. .-..+...+-
T Consensus 41 ~~~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~--lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~ 118 (410)
T KOG3662|consen 41 QWASNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWY--LRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKR 118 (410)
T ss_pred cccCCCCceEEEEecCchhcCCCCCccccchHHhhhhHHH--HHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHH
Confidence 4555578999999999997 311 11 110 112221 233334443 47999999999999965 4455555555
Q ss_pred HHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCC
Q 004738 76 IEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD 135 (732)
Q Consensus 76 ~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~ 135 (732)
.+-|++. |+ .+-.+|++.|+||||-..+..
T Consensus 119 ~~RfkkI----------------------f~--------~k~~~~~~~i~GNhDIGf~~~ 148 (410)
T KOG3662|consen 119 YERFKKI----------------------FG--------RKGNIKVIYIAGNHDIGFGNE 148 (410)
T ss_pred HHHHHHh----------------------hC--------CCCCCeeEEeCCccccccccc
Confidence 5545543 21 124799999999999877654
No 88
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.57 E-value=0.00012 Score=75.76 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=40.4
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH----h------cCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE----Q------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~----e------~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l 82 (732)
|||++++|+|-- +.+|+.+++.+. + .+.|.|++.|||++...-+.. ++++|+.+
T Consensus 1 ~~i~vigDIHG~------------~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~e----vl~~l~~l 64 (234)
T cd07423 1 GPFDIIGDVHGC------------YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPE----VLRLVMSM 64 (234)
T ss_pred CCeEEEEECCCC------------HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHH----HHHHHHHH
Confidence 689999999987 557888888762 1 147999999999998755554 45555543
No 89
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.56 E-value=0.00014 Score=73.82 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCC
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKP 67 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e-~~VD~VLlaGDLFh~~kP 67 (732)
.||+++||+|-- +.+|+++++.+.. .++|.|+++||+++....
T Consensus 1 ~ri~~isDiHg~------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~ 44 (207)
T cd07424 1 GRDFVVGDIHGH------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPE 44 (207)
T ss_pred CCEEEEECCCCC------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCC
Confidence 379999999933 4578888887753 479999999999997633
No 90
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.45 E-value=0.00021 Score=72.45 Aligned_cols=68 Identities=21% Similarity=0.201 Sum_probs=51.0
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeec
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lS 95 (732)
++++|+|-. +..|..+++.+.....|.+++.||++|....+.. +++.|..+.
T Consensus 1 ~~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~----~l~~l~~~~------------ 52 (225)
T cd00144 1 YVIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVE----VIDLLLALK------------ 52 (225)
T ss_pred CEEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHH----HHHHHHHhc------------
Confidence 368999943 4578888888877889999999999999876654 444444331
Q ss_pred hhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 96 d~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
.. ..+|++|.||||..
T Consensus 53 -------------------~~-~~~~~~l~GNHe~~ 68 (225)
T cd00144 53 -------------------IL-PDNVILLRGNHEDM 68 (225)
T ss_pred -------------------CC-CCcEEEEccCchhh
Confidence 01 45799999999974
No 91
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=97.37 E-value=0.0032 Score=71.95 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=60.8
Q ss_pred hhHhhcChhhhhhccCCCceEEEEEcccCCCCCC--cc-------ccc-c---ccCCc--CCCEEEeCcccccccCCcc-
Q 004738 200 HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP--KN-------AIN-E---HFLPR--FLDFVVWGHEHECLIDPQE- 263 (732)
Q Consensus 200 ~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~--~~-------~I~-e---~lLp~--~~DyVa~GH~H~~~i~Pq~- 263 (732)
.++.||+..... ..+...|+++|++...... .+ ... + ++|.. .+-+|++||+|...+.+..
T Consensus 323 eQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~ 399 (496)
T TIGR03767 323 TQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRR 399 (496)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccC
Confidence 457787665432 2345689999997542211 00 000 1 22322 5888999999987654321
Q ss_pred ----cCCCCceEecCCCCcccccccCccCCCeEEEEEEeC---CeeEEEEEECCCCCcE
Q 004738 264 ----VPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKE---NQYRPTKIPLTSVRPF 315 (732)
Q Consensus 264 ----~~~~g~~I~yPGS~vatS~~egE~~~Kgv~LLeI~~---~~~~ve~IpL~tvRpf 315 (732)
.++.+|+-+..+|.+ ..|..+=++||.. +.+.+.-.-+.+.-|.
T Consensus 400 ~~~~~p~~gfweI~TaSlv--------dfPq~~Ri~Ei~~n~dgt~si~tt~vd~~~~~ 450 (496)
T TIGR03767 400 VEGVGKDKGFWEINTASHI--------DFPQQGRIIELADNQDGTVSIFTTLIESAAPY 450 (496)
T ss_pred CCCCCCcCCeEEEeccccc--------cCCCCceEEEEEeCCCCcEEEEEEecccCCCc
Confidence 123478888888763 2477788888854 3455555555544443
No 92
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0017 Score=73.27 Aligned_cols=189 Identities=15% Similarity=0.053 Sum_probs=93.1
Q ss_pred CCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCC
Q 004738 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (732)
Q Consensus 8 ~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~ 87 (732)
.+.-..++.++.|+=..+.... +...... ..++|+|||.|||-....-....-...+++++-+
T Consensus 143 ~~~~~~~~~i~GDlG~~~~~~s----------~~~~~~~--~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~----- 205 (452)
T KOG1378|consen 143 GQDSPTRAAIFGDMGCTEPYTS----------TLRNQEE--NLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPI----- 205 (452)
T ss_pred CccCceeEEEEccccccccccc----------hHhHHhc--ccCCcEEEEecchhhcCCCCccchHHHHhhhhhh-----
Confidence 4557899999999866654321 2222211 1279999999999654322212222333433321
Q ss_pred CcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccceeecCCCccceeE
Q 004738 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (732)
Q Consensus 88 p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~~l~~~~~~~i~i 167 (732)
.+-+|..++.|||+.-.-... .-....+.|.-..... +-..
T Consensus 206 ----------------------------As~vPymv~~GNHE~d~~~~~-------~F~~y~~Rf~mP~~~s-~s~~--- 246 (452)
T KOG1378|consen 206 ----------------------------ASYVPYMVCSGNHEIDWPPQP-------CFVPYSARFNMPGNSS-ESDS--- 246 (452)
T ss_pred ----------------------------hccCceEEecccccccCCCcc-------cccccceeeccCCCcC-CCCC---
Confidence 357899999999997543210 1111222222211000 0011
Q ss_pred EEEEEeeCCeeEEEEecCCCcHHHHHhhhcC-hhhHhhcChhhhhhccCC-CceEEEEEcccCCCCCC-----ccc----
Q 004738 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQT-PHAVQWMRPEAQEECQVS-DWFNILVLHQNRVKTNP-----KNA---- 236 (732)
Q Consensus 168 ~Pvll~kG~t~vaLyGLg~irderL~~~f~~-~~~v~~l~P~~~~~~~~~-~~fnILvlHqn~~~~~~-----~~~---- 236 (732)
|+........+.+.+|+.-.+. .+.. ..+-+||+.....- ... .-.-|++.|-+..-... +..
T Consensus 247 -~l~YSfd~G~vhfv~lsse~~~----~~~~~~~QY~WL~~dL~~v-~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~ 320 (452)
T KOG1378|consen 247 -NLYYSFDVGGVHFVVLSTETYY----NFLKGTAQYQWLERDLASV-DRKKTPWLIVQGHRPMYCSSNDAHYREGEFESM 320 (452)
T ss_pred -ceeEEEeeccEEEEEEeccccc----cccccchHHHHHHHHHHHh-cccCCCeEEEEecccceecCCchhhccCcchhh
Confidence 1111111223444555433322 1111 12356665443211 112 35679999987643221 100
Q ss_pred ---cccccCCcCCCEEEeCcccccc
Q 004738 237 ---INEHFLPRFLDFVVWGHEHECL 258 (732)
Q Consensus 237 ---I~e~lLp~~~DyVa~GH~H~~~ 258 (732)
+.+-+....+|.|+|||.|...
T Consensus 321 ~~~LE~l~~~~~VDvvf~GHvH~YE 345 (452)
T KOG1378|consen 321 REGLEPLFVKYKVDVVFWGHVHRYE 345 (452)
T ss_pred HHHHHHHHHHhceeEEEeccceehh
Confidence 1122345689999999999853
No 93
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.31 E-value=0.00041 Score=73.59 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=50.1
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceee
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e-~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~ 93 (732)
+.+++|+|-. +.+|+++++.+.- .+.|.++++||+++...-|. +++++|+++
T Consensus 1 ~yvIGDIHG~------------~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~----evl~~l~~l----------- 53 (257)
T cd07422 1 TYAIGDIQGC------------YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSL----ETLRFVKSL----------- 53 (257)
T ss_pred CEEEECCCCC------------HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHH----HHHHHHHhc-----------
Confidence 3689999976 5678999988753 47899999999999875444 355666542
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 94 lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
+..+++|.||||..
T Consensus 54 ------------------------~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 ------------------------GDSAKTVLGNHDLH 67 (257)
T ss_pred ------------------------CCCeEEEcCCchHH
Confidence 24788999999974
No 94
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.25 E-value=0.00039 Score=71.49 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=41.1
Q ss_pred ccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCChhHHHHHHHHHH
Q 004738 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (732)
Q Consensus 12 ~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~-~VD~VLlaGDLFh~~kPs~~tl~~~~elLr 80 (732)
-.||.+++|+|-- +.+|+++++.+... +.|.|++.||+.|...-|.. ++++|+
T Consensus 16 ~~ri~vigDIHG~------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~----vl~~l~ 69 (218)
T PRK11439 16 WRHIWLVGDIHGC------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR----CLQLLE 69 (218)
T ss_pred CCeEEEEEcccCC------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH----HHHHHH
Confidence 3599999999987 56788999887644 78999999999998754543 455553
No 95
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.19 E-value=0.00068 Score=71.01 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh---------cCCCEEEEcCCCCCCCCCChhHHHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ---------KEVDFVLLGGDLFHENKPSRSTLVKA 75 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e---------~~VD~VLlaGDLFh~~kPs~~tl~~~ 75 (732)
||+.+++|+|-- +..|.++++.+.- ..-|.+++.|||.|...-|..++..+
T Consensus 1 ~~~~vIGDIHG~------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~ 60 (245)
T PRK13625 1 MKYDIIGDIHGC------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIV 60 (245)
T ss_pred CceEEEEECccC------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHH
Confidence 789999999943 5577888876532 13579999999999886666544333
No 96
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.18 E-value=0.00057 Score=70.43 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCC
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~kPs 68 (732)
=||++++|+|-- +.+|+++++.+. ..++|.|++.||+.+...-+
T Consensus 15 ~ri~visDiHg~------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~ 59 (218)
T PRK09968 15 RHIWVVGDIHGE------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPES 59 (218)
T ss_pred CeEEEEEeccCC------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH
Confidence 399999999965 557888888765 46899999999999987434
No 97
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.01 E-value=0.01 Score=63.10 Aligned_cols=190 Identities=21% Similarity=0.198 Sum_probs=99.4
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
|||++.|+= |... ..++...|...+ ++++|+++..||.+-...+-.. ...+.|.
T Consensus 1 ~ilfigdi~-g~~G---------~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~------------ 55 (255)
T cd07382 1 KILFIGDIV-GKPG---------RKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELL------------ 55 (255)
T ss_pred CEEEEEeCC-CHHH---------HHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHH------------
Confidence 577777763 3221 335555555554 5689999999999876543322 3344443
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCc----eEEccceeecCCCccceeEE
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKMVLGGSGVGEITVY 168 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~gl----Vn~FGk~~l~~~~~~~i~i~ 168 (732)
..++-++.+ |||....+ +. +..|..... .||.... + ..
T Consensus 56 -----------------------~~G~D~iTl-GNH~fD~g-el---~~~l~~~~~~l~~aN~~~~~--p--------g~ 97 (255)
T cd07382 56 -----------------------SAGVDVITM-GNHTWDKK-EI---LDFIDEEPRLLRPANYPPGT--P--------GR 97 (255)
T ss_pred -----------------------hcCCCEEEe-cccccCcc-hH---HHHHhcCcCceEeeecCCCC--C--------CC
Confidence 246777777 99988766 21 233332211 1221100 0 11
Q ss_pred E-EEEeeCCeeEEEEecCCCcHHHHHhhhcCh-hhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCcCC
Q 004738 169 P-ILIRKGSTAVALYGLGNIRDERLNRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (732)
Q Consensus 169 P-vll~kG~t~vaLyGLg~irderL~~~f~~~-~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~~~ 246 (732)
| .++..++.+|++.|+--.. -+. .+..+ ..++...++.. ....+-|+++|..... .+..+ ..+++..+
T Consensus 98 ~~~i~~~~G~kIaVigl~g~~--~~~-~~~~P~~~~~~~v~~lk----~~~D~IIV~~H~g~ts--Ek~al-a~~ldg~V 167 (255)
T cd07382 98 GYGVVEVNGKKIAVINLMGRV--FMP-PLDNPFRAADELLEELK----EEADIIFVDFHAEATS--EKIAL-GWYLDGRV 167 (255)
T ss_pred CeEEEEECCEEEEEEEEeccc--CCC-cCCCHHHHHHHHHHHHh----cCCCEEEEEECCCCCH--HHHHH-HHhCCCCc
Confidence 2 3345667899988873110 000 11111 01111112111 1345889999985321 01011 13556679
Q ss_pred CEEEeCcccccccCCcccCCCCceEecCCC
Q 004738 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (732)
Q Consensus 247 DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS 276 (732)
|.|+-||.|....+.+.+++...++...|-
T Consensus 168 dvIvGtHTHv~t~d~~il~~gTa~itd~Gm 197 (255)
T cd07382 168 SAVVGTHTHVQTADERILPGGTAYITDVGM 197 (255)
T ss_pred eEEEeCCCCccCCccEEeeCCeEEEecCcc
Confidence 999999999987664445443235555553
No 98
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.94 E-value=0.0016 Score=69.85 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
|++.+++|+|-- +.+|+++++.+. ....|.+++.|||++...-|.. ++++++.
T Consensus 1 m~~YvIGDIHGc------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle----vL~~l~~ 54 (279)
T TIGR00668 1 MATYLIGDLHGC------------YDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE----VLRYVKS 54 (279)
T ss_pred CcEEEEEcccCC------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH----HHHHHHh
Confidence 578999999986 567899998886 4478999999999998755544 4455543
No 99
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.72 E-value=0.0082 Score=60.48 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCceEEEEEcccCCC-CCCccccccccCCcCCCEEEeCccccc
Q 004738 216 SDWFNILVLHQNRVK-TNPKNAINEHFLPRFLDFVVWGHEHEC 257 (732)
Q Consensus 216 ~~~fnILvlHqn~~~-~~~~~~I~e~lLp~~~DyVa~GH~H~~ 257 (732)
...--|+|.|.+... .++...+.+-+-...++.++.||+|+.
T Consensus 157 ~~~~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv 199 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGV 199 (230)
T ss_pred CcCeEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCC
Confidence 344568999987543 233344554444566999999999995
No 100
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.67 E-value=0.0029 Score=65.42 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=36.7
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--------CCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--------EVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 16 Lh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--------~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
.+++|+|-- +.+|+++++.+... ..|.|++.||+.|...-|.. ++++|.+
T Consensus 2 ~vIGDIHG~------------~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~----vl~~l~~ 59 (222)
T cd07413 2 DFIGDIHGH------------AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRE----LLEIVKS 59 (222)
T ss_pred EEEEeccCC------------HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHH----HHHHHHH
Confidence 578999976 55788888776432 47899999999999865655 4455544
No 101
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.53 E-value=0.0073 Score=65.39 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh------cCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e------~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
+|+.++|+|-- +..|+++++.+.+ ...+.||+.||+.|...-+.. ++++|..
T Consensus 3 ~iyaIGDIHG~------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e----Vld~L~~ 60 (304)
T cd07421 3 VVICVGDIHGY------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK----VIDFLIS 60 (304)
T ss_pred eEEEEEeccCC------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH----HHHHHHH
Confidence 68999999976 4467777665432 246789999999998854544 5555554
No 102
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.21 E-value=0.011 Score=63.21 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=40.6
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKA 75 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~ 75 (732)
.++.+++|+|-. +.+|.++++.+.....+.+|+.||++|...++.+++...
T Consensus 28 ~~i~vvGDiHG~------------~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l 78 (271)
T smart00156 28 APVTVCGDIHGQ------------FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLL 78 (271)
T ss_pred CCEEEEEeCcCC------------HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHH
Confidence 579999999976 456777777766677899999999999998887655433
No 103
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.01 Score=58.08 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=52.4
Q ss_pred CceEEEEEcccCC-CCCCccccccccCC--cCCCEEEeCcccccccCCcccCCCCceEecCCCCcc-cccccCccCCCeE
Q 004738 217 DWFNILVLHQNRV-KTNPKNAINEHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TSLIEGESKPKHV 292 (732)
Q Consensus 217 ~~fnILvlHqn~~-~~~~~~~I~e~lLp--~~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~va-tS~~egE~~~Kgv 292 (732)
+.|+|.+.|+... +.+.. ....+|. -.+|..+|||+|++... +. .|.++++|||.-+ .+.++-+..-.+|
T Consensus 78 GqfkIG~chGhqViP~gd~--~sL~~LaRqldvDILl~G~Th~f~Ay--e~--eg~ffvnPGSaTGAfn~~~t~~~~PSF 151 (183)
T KOG3325|consen 78 GQFKIGLCHGHQVIPWGDP--ESLALLARQLDVDILLTGHTHKFEAY--EH--EGKFFVNPGSATGAFNVSDTDIIVPSF 151 (183)
T ss_pred ccEEEEeecCcEeecCCCH--HHHHHHHHhcCCcEEEeCCceeEEEE--Ee--CCcEEeCCCcccCCCcccccCCCCCce
Confidence 6799999997532 21111 1112332 36999999999998532 33 3567899999754 5555444456789
Q ss_pred EEEEEeCCee
Q 004738 293 LLLEIKENQY 302 (732)
Q Consensus 293 ~LLeI~~~~~ 302 (732)
+|++|.+..+
T Consensus 152 vLmDiqg~~~ 161 (183)
T KOG3325|consen 152 VLMDIQGSTV 161 (183)
T ss_pred EEEEecCCEE
Confidence 9999998754
No 104
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.06 E-value=0.1 Score=55.96 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
||||++.|+= |.. -..++.+.|..++ ++++|+++..||.+........ .+++.|.
T Consensus 1 m~ilfiGDi~-G~~---------Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~---~~~~~L~----------- 56 (266)
T TIGR00282 1 IKFLFIGDVY-GKA---------GRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTL---KIYEFLK----------- 56 (266)
T ss_pred CeEEEEEecC-CHH---------HHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCH---HHHHHHH-----------
Confidence 8999999986 321 2346767666665 5679999999999976532221 3444443
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhC-Cc---eEEccceeecCCCccceeE
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSAC-NL---VNYFGKMVLGGSGVGEITV 167 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~-gl---Vn~FGk~~l~~~~~~~i~i 167 (732)
+.++-|+.+ |||.+-.+. .++.+... .+ .||-.. .++. .
T Consensus 57 ------------------------~~GvDviT~-GNH~~Dkge----~~~~i~~~~~~lrpanyp~~--~pG~---g--- 99 (266)
T TIGR00282 57 ------------------------QSGVNYITM-GNHTWFQKL----ILDVVINQKDLVRPLNFDTS--FAGK---G--- 99 (266)
T ss_pred ------------------------hcCCCEEEc-cchhccCcH----HHHHHhccccccccCCCCCC--CCCC---C---
Confidence 357888888 899987653 11222211 11 121110 0011 1
Q ss_pred EEEEEeeCCeeEEEEecC---CCcHHHHHhhhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCCCCccccccccCCc
Q 004738 168 YPILIRKGSTAVALYGLG---NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (732)
Q Consensus 168 ~Pvll~kG~t~vaLyGLg---~irderL~~~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~~~~~I~e~lLp~ 244 (732)
..++..++.+|++.++- ++..-.+...|. .++.+.++. .....+-|+.+|..... ....-..++..
T Consensus 100 -~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~---~~d~~i~~l----k~~~d~IIVd~Haeats---EK~a~~~~ldg 168 (266)
T TIGR00282 100 -SLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFK---VLKELINML----KKDCDLIFVDFHAETTS---EKNAFGMAFDG 168 (266)
T ss_pred -cEEEEECCEEEEEEECCCcccCCccccCCHHH---HHHHHHHhh----hcCCCEEEEEeCCCCHH---HHHHHHHHhCC
Confidence 12335566788776652 221100111111 122221221 11235889999986421 11111346788
Q ss_pred CCCEEEeCcccccccCCcccCC
Q 004738 245 FLDFVVWGHEHECLIDPQEVPG 266 (732)
Q Consensus 245 ~~DyVa~GH~H~~~i~Pq~~~~ 266 (732)
++|.|+--|.|-.--+.+-+++
T Consensus 169 ~vsaVvGtHtHV~TaD~~il~~ 190 (266)
T TIGR00282 169 YVTAVVGTHTHVPTADLRILPK 190 (266)
T ss_pred CccEEEeCCCCCCCCcceeCCC
Confidence 9999999999997655444443
No 105
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.00 E-value=0.026 Score=65.60 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=59.7
Q ss_pred CCccEEEEEcCCCCCCC--CC----------------------------chh-chhcHHHHHHHHHHHHHhcC--CCEEE
Q 004738 10 ANTVRILVATDCHLGYM--EK----------------------------DEI-RRHDSFEAFEEICSIAEQKE--VDFVL 56 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~--e~----------------------------d~~-R~~Ds~~aFeeIl~~A~e~~--VD~VL 56 (732)
.-++||||+||+|.... +. +.. -.+-.+.+++.+|+.+++.. +|+|+
T Consensus 136 ~p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~ 215 (577)
T KOG3770|consen 136 NPTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYII 215 (577)
T ss_pred CCceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 35699999999999631 10 011 12334789999999887653 79999
Q ss_pred EcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 004738 57 LGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (732)
Q Consensus 57 laGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p 131 (732)
.+||+-... .-..+.....+.+.++. ..+...| .++|||..-||||..
T Consensus 216 wTGD~~~H~-~w~~t~~~~l~~~~~l~---------------~~~~e~F-----------pdvpvypalGNhe~~ 263 (577)
T KOG3770|consen 216 WTGDNVAHD-VWAQTEEENLSMLSRLT---------------SLLSEYF-----------PDVPVYPALGNHEIH 263 (577)
T ss_pred EeCCCCccc-chhhhHHHHHHHHHHHH---------------HHHHHhC-----------CCCceeeecccCCCC
Confidence 999987544 22233333333343331 0111123 378999999999964
No 106
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.00 E-value=0.12 Score=54.10 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCCCCC-chHHHhhhhCCceEEccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCcHHHHH-
Q 004738 116 NVGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN- 193 (732)
Q Consensus 116 n~~IPVf~I~GNHD~p~g~~~-lsaldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvll~kG~t~vaLyGLg~irderL~- 193 (732)
..++-++.+..||-.-.|... ...++.|...| +.++|... . ..-...|.++..++.+|++.|..+.......
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~g-i~~~Gag~----~-~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~ 146 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAG-IPYVGAGR----N-LEEARRPAIIEVNGVKIAFLGYTDGENGYSSA 146 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHHHCC-CcEeECcC----C-hHHhcCeEEEEECCEEEEEEEEEcCCCCCccc
Confidence 357889999999976665433 35667888777 45577321 0 1122457888899999999987644311000
Q ss_pred hh-----hc----------ChhhHhhcChhhhhhccCCCceEEEEEcccCCCC-CCcc---ccccccCCcCCCEEEeCcc
Q 004738 194 RM-----FQ----------TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHE 254 (732)
Q Consensus 194 ~~-----f~----------~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~-~~~~---~I~e~lLp~~~DyVa~GH~ 254 (732)
.. +. ....++.+..... .......+-|+++|...... .|.. .+...++..++|+|+-+|-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 147 NGNRPYGFSYRPDKAGLNPNRPGIERIKEDIR-EARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred cccccccccccccccccccccchHHHHHHHHH-HHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCC
Confidence 00 00 0000111111111 11124678999999864321 1211 1223466789999999999
Q ss_pred ccccc
Q 004738 255 HECLI 259 (732)
Q Consensus 255 H~~~i 259 (732)
|.-+.
T Consensus 226 Hv~q~ 230 (250)
T PF09587_consen 226 HVIQP 230 (250)
T ss_pred Ccccc
Confidence 99653
No 107
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.91 E-value=0.066 Score=55.50 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCc-hHHHhhhhCCceEEccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCcHHHHH-h
Q 004738 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN-R 194 (732)
Q Consensus 117 ~~IPVf~I~GNHD~p~g~~~l-saldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvll~kG~t~vaLyGLg~irderL~-~ 194 (732)
.++-++.+.+||..-.|...+ ..++.|...|+ .++|... .. .-...|+++..++.+|++.|+......... .
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i-~~~g~~~----~~-~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~ 149 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGI-AHAGAGR----NL-EEARRPAILEVNGIKVAFLAYTYGTNGIPLAA 149 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCC-ceeECCC----CH-HHhcCcEEEEECCEEEEEEEEECCCCCCcCcc
Confidence 477888888999987776543 33455665554 3344321 00 001246677788899999998543211000 0
Q ss_pred ------hhcChhhHhhcChhhhhhccCCCceEEEEEcccCCCC-CCcc---ccccccCCcCCCEEEeCcccccc
Q 004738 195 ------MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHEHECL 258 (732)
Q Consensus 195 ------~f~~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~-~~~~---~I~e~lLp~~~DyVa~GH~H~~~ 258 (732)
.+.. .++.+..... .......+-|+++|...... .|.. .+...++..++|+|+-||-|..+
T Consensus 150 ~~~~~~~~~~--~~~~~~~~i~-~lr~~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 150 GARPGGVNPL--DLERIAADIA-EAKKKADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred cCCccccCcc--CHHHHHHHHH-HHhhcCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 0000 0111111110 01113578999999865422 1111 11123445689999999999854
No 108
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=95.82 E-value=0.0081 Score=60.79 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=34.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-hcCCCEEEEcCCCCCCCCCC
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-e~~VD~VLlaGDLFh~~kPs 68 (732)
|+++||.|++.... .++.|++++..+. +.+|+.+|++|++.+...+.
T Consensus 1 Iv~~Sg~~~~~~~~-------~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~ 48 (209)
T PF04042_consen 1 IVFASGPFLDSDNL-------SLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPY 48 (209)
T ss_dssp EEEEES--CTTT-H-------HHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHH
T ss_pred CEEEecCccCCCHh-------HHHHHHHHHHhccccCCCcEEEEeCCCcCccccc
Confidence 78999999994322 3778888888877 89999999999999976543
No 109
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.74 E-value=0.025 Score=61.52 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.4
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~ 74 (732)
-++.+++|+|-. +..|.++++.+.....+.+|+.||++|....+.+++..
T Consensus 43 ~~i~ViGDIHG~------------~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~l 92 (305)
T cd07416 43 APVTVCGDIHGQ------------FYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLY 92 (305)
T ss_pred CCEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHH
Confidence 368999999976 44677777776666679999999999999888765433
No 110
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.36 E-value=0.12 Score=53.82 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCc-hHHHhhhhCCceEEccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCcHHHHH--
Q 004738 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN-- 193 (732)
Q Consensus 117 ~~IPVf~I~GNHD~p~g~~~l-saldiL~~~glVn~FGk~~l~~~~~~~i~i~Pvll~kG~t~vaLyGLg~irderL~-- 193 (732)
.++-++.+.+||..-.|...+ ..++.|...|+ .++|... .... ...|+++..++.+|++.|+.+.....+.
T Consensus 72 ~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i-~~~g~~~----~~~~-~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~ 145 (239)
T smart00854 72 AGFDVVSLANNHSLDYGEEGLLDTLAALDAAGI-AHVGAGR----NLAE-ARKPAIVEVKGIKIALLAYTYGTNNGWAAS 145 (239)
T ss_pred hCCCEEEeccCcccccchHHHHHHHHHHHHCCC-CEeeCCC----ChHH-hhCcEEEEECCEEEEEEEEEcCCCCCcccC
Confidence 477888899999988876544 34455665554 3455421 0011 1246677888899999997543210000
Q ss_pred -------hhhc-ChhhHhhcChhhhhhccCCCceEEEEEcccCCCCC-Ccc---ccccccCCcCCCEEEeCcccccc
Q 004738 194 -------RMFQ-TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN-PKN---AINEHFLPRFLDFVVWGHEHECL 258 (732)
Q Consensus 194 -------~~f~-~~~~v~~l~P~~~~~~~~~~~fnILvlHqn~~~~~-~~~---~I~e~lLp~~~DyVa~GH~H~~~ 258 (732)
.+.. ....+.....+. .....+-|+++|....... |.. .+...++..++|+|+.||-|..+
T Consensus 146 ~~~~g~~~~~~~~~~~i~~~i~~l----r~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~ 218 (239)
T smart00854 146 KDRPGVALLPDLDREKILADIARA----RKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQ 218 (239)
T ss_pred CCCCCeeecCcCCHHHHHHHHHHH----hccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCC
Confidence 0000 000011000111 1235789999998764321 111 12233445789999999999854
No 111
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.16 E-value=0.035 Score=59.90 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~ 73 (732)
++.+++|+|-. +..+.+++..+.....+.+|+.||++|...++.+++.
T Consensus 43 ~i~vvGDIHG~------------~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 90 (285)
T cd07415 43 PVTVCGDIHGQ------------FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFL 90 (285)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHH
Confidence 58999999976 4456777766655567889999999999988776543
No 112
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.96 E-value=0.052 Score=58.80 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~ 73 (732)
-++.+++|+|-. +..|.+++........+-+|+.||++|...++.+++.
T Consensus 50 ~~i~viGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ 98 (293)
T cd07414 50 APLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETIC 98 (293)
T ss_pred CceEEEEecCCC------------HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHH
Confidence 358999999976 4466777776666667889999999999988876543
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=94.92 E-value=0.045 Score=60.07 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl 72 (732)
++.+++|+|-. +..+.+++..+.....+.+|+.||++|...++.+++
T Consensus 60 ~i~vvGDIHG~------------~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl 106 (320)
T PTZ00480 60 PLKICGDVHGQ------------YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETI 106 (320)
T ss_pred CeEEEeecccC------------HHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHH
Confidence 58899999976 445667777666566788999999999998887643
No 114
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.06 E-value=0.098 Score=57.02 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl 72 (732)
.+.+++|+|-. +.++..+++.+.....+.+|+.||++|...++.+++
T Consensus 44 ~i~vvGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl 90 (303)
T PTZ00239 44 PVNVCGDIHGQ------------FYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETM 90 (303)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHH
Confidence 48899999976 445666766555556788999999999998877644
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=93.93 E-value=0.095 Score=56.86 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=35.2
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHH
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl 72 (732)
+.+++|+|-. +..|.++++.+.-...+-+|+.||++|...++.+++
T Consensus 54 ~~ViGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl 99 (294)
T PTZ00244 54 VRVCGDTHGQ------------YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETI 99 (294)
T ss_pred ceeeccCCCC------------HHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHH
Confidence 7789999976 446677777665555667889999999998887644
No 116
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.70 E-value=0.14 Score=57.41 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCC-CEEEEcCCCCCCCCCChhHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~V-D~VLlaGDLFh~~kPs~~tl 72 (732)
-+|++++|+|-- +.+|..+++.+.-... +.+|+.||++|....+.+++
T Consensus 66 ~~i~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl 114 (377)
T cd07418 66 CEVVVVGDVHGQ------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETF 114 (377)
T ss_pred CCEEEEEecCCC------------HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHH
Confidence 358999999976 4456667765433333 45899999999988777654
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=93.52 E-value=0.16 Score=55.79 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCChhHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~-~VD~VLlaGDLFh~~kPs~~tl 72 (732)
++++++|+|-- +..|..+++.+.-. .-+.+|+.||+.|...-|.+++
T Consensus 52 ~~~vvGDiHG~------------~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl 99 (321)
T cd07420 52 QVTICGDLHGK------------LDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEIL 99 (321)
T ss_pred CeEEEEeCCCC------------HHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHH
Confidence 78999999986 33456666544322 2367999999999998777644
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=93.52 E-value=0.14 Score=56.01 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHh-cCCCEEEEcCCCCCCCCCChhHHHHHH
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAI 76 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e-~~VD~VLlaGDLFh~~kPs~~tl~~~~ 76 (732)
.++.+++|+|-- +..|.+++..+.- ..-|.+|+.||++|....+.+++...+
T Consensus 60 ~~~~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~ 112 (316)
T cd07417 60 EKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLF 112 (316)
T ss_pred ceeEEeecccCC------------HHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHH
Confidence 579999999976 3456666655432 123679999999999988887654433
No 119
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.19 E-value=0.14 Score=50.29 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=33.9
Q ss_pred HhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCC
Q 004738 48 EQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGN 127 (732)
Q Consensus 48 ~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GN 127 (732)
+...+|++|+.||+|....-. +-+..|. +++..+.+|+|.|-||
T Consensus 23 k~gpFd~~ic~Gdff~~~~~~--------~~~~~y~----------------------------~g~~~~pipTyf~ggn 66 (150)
T cd07380 23 KKGPFDALLCVGDFFGDDEDD--------EELEAYK----------------------------DGSKKVPIPTYFLGGN 66 (150)
T ss_pred ccCCeeEEEEecCccCCccch--------hhHHHHh----------------------------cCCccCCCCEEEECCC
Confidence 456799999999999865433 2344442 3345789999999999
Q ss_pred CC
Q 004738 128 HD 129 (732)
Q Consensus 128 HD 129 (732)
|.
T Consensus 67 ~~ 68 (150)
T cd07380 67 NP 68 (150)
T ss_pred CC
Confidence 96
No 120
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=92.93 E-value=0.25 Score=54.00 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc----C----CCEEEEcCCCCCCCCCChhHHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E----VDFVLLGGDLFHENKPSRSTLV 73 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~----~----VD~VLlaGDLFh~~kPs~~tl~ 73 (732)
.+.+++|+|-- +..|.++++.+.-. . ..-+|+.||++|....+.+++.
T Consensus 49 ~~~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ 104 (311)
T cd07419 49 PIKIFGDIHGQ------------FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETIC 104 (311)
T ss_pred CEEEEEeccCC------------HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHH
Confidence 47888999976 34566666554211 0 1247899999999988876543
No 121
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=92.23 E-value=0.58 Score=53.77 Aligned_cols=109 Identities=18% Similarity=0.344 Sum_probs=63.1
Q ss_pred CCccEEEEEcCCCCCCCCCc------------------hhchhcHH--HHHHHHHHHH----HhcCCCEEEEcCCCCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKD------------------EIRRHDSF--EAFEEICSIA----EQKEVDFVLLGGDLFHEN 65 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d------------------~~R~~Ds~--~aFeeIl~~A----~e~~VD~VLlaGDLFh~~ 65 (732)
..-.+|+++||+||--.+.. ..|-...+ ..|+.+++.+ .....||+|-+||..+..
T Consensus 34 ~~l~~f~~~tDvHi~D~esP~r~~~l~~~~~~~~~~~s~y~P~~~~t~~v~~AaVqtvNal~~~~p~df~is~GD~~nn~ 113 (492)
T TIGR03768 34 KRLLRFFTISDVHITDKESPNQLIYLQQTEPAAAPNTSIYSPVMLYSTQVLDAAVQTVNDLHKRDRFDFGISLGDACNST 113 (492)
T ss_pred chheeeeeeeeeeeccccCchhhhhhcccccccCCCccccChhHHHHHHHHHHHHHHHHHhhcCCCceEEEeccccccch
Confidence 44589999999999633210 11222222 3455555544 445789999999999865
Q ss_pred CCChhHHHHHHHHHHHhccCCCCcceeeech-----hhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 004738 66 KPSRSTLVKAIEILRRHCLNDRPVQFQVVSD-----QAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 66 kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd-----~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~ 132 (732)
....|.+.+++|. | ++|.= -|= ..+-|+..| .-+-++..||+|.+.||||...
T Consensus 114 --~~nElrWyidvld----G-~~I~p--~SG~~~~~e~v~~~~p~-----~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 114 --QYNELRWYIDVLD----G-KPITP--SSGAHAGADTIDYQKPF-----QAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred --hHHHHHHHHHHhc----C-Ceecc--CCCCCCCccCCCCCCcc-----cccccCCCCceEEeecCCcccc
Confidence 3445666666653 3 34421 000 011233222 2233456699999999999754
No 122
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=91.83 E-value=0.89 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.1
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCC
Q 004738 110 YEDPHFNVGLPVFSIHGNHDDPA 132 (732)
Q Consensus 110 yedpn~n~~IPVf~I~GNHD~p~ 132 (732)
|......+.+|.+.|-|||....
T Consensus 67 YYsge~~APVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 67 YYSGEIKAPVLTIFIGGNHEASN 89 (456)
T ss_pred HhCCcccCceeEEEecCchHHHH
Confidence 33334568899999999999654
No 123
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=85.35 E-value=2.5 Score=49.73 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=38.2
Q ss_pred CCCccEEEEEcCCCCCCC--CCchhchhc--HHHHH-HHHHHHHHhcCCCEEEE-cCCCCCCCC
Q 004738 9 IANTVRILVATDCHLGYM--EKDEIRRHD--SFEAF-EEICSIAEQKEVDFVLL-GGDLFHENK 66 (732)
Q Consensus 9 ~~~~mRILh~SD~HLG~~--e~d~~R~~D--s~~aF-eeIl~~A~e~~VD~VLl-aGDLFh~~k 66 (732)
....++|+|+||+|-+-. ..+..+..| -|.+| ..+-++|...+||.+++ +||+.+.+-
T Consensus 39 ~~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg 102 (602)
T KOG4419|consen 39 NWGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTG 102 (602)
T ss_pred ccccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCce
Confidence 356689999999997654 222211111 24555 55666788899998765 899988753
No 124
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.31 E-value=8.5 Score=44.26 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcce
Q 004738 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (732)
Q Consensus 13 mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~-VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~ 91 (732)
.|||++.|.--. .-+.|+.|-+.-++.+ .|++++.|++|.+..-+.. +.+|..
T Consensus 6 ~kILv~Gd~~Gr-----------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e--------~~~ykn------- 59 (528)
T KOG2476|consen 6 AKILVCGDVEGR-----------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAE--------VEKYKN------- 59 (528)
T ss_pred ceEEEEcCcccc-----------HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhH--------HHHHhc-------
Confidence 799999886433 2346777777767777 7999999999987332221 223321
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCCchHHHhhhhCCceEEccce
Q 004738 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM 155 (732)
Q Consensus 92 e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g~~~lsaldiL~~~glVn~FGk~ 155 (732)
.+..+.||+|+.-+|--.+.. .+..++-...+.++.|+|..
T Consensus 60 ---------------------g~~~vPiptY~~g~~~~~~~k--y~~n~~g~Ei~~Nlt~Lg~~ 100 (528)
T KOG2476|consen 60 ---------------------GTKKVPIPTYFLGDNANETEK--YFENSDGKEIAENLTYLGRK 100 (528)
T ss_pred ---------------------CCccCceeEEEecCCCCccce--ecccCCCcccccceeeeccc
Confidence 223568999999888753321 12223445556677777763
No 125
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=67.05 E-value=6.2 Score=46.92 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004738 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (732)
Q Consensus 41 eeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l 82 (732)
..+..++++.-||-+=+.||+||.. |.+. ..|+.|..+
T Consensus 174 ~al~~lIqrL~VDhLHIvGDIyDRG-p~pd---~ImD~Lm~~ 211 (640)
T PF06874_consen 174 IALSELIQRLAVDHLHIVGDIYDRG-PRPD---KIMDRLMNY 211 (640)
T ss_pred HHHHHHHHHHhhhheeecccccCCC-CChh---HHHHHHhcC
Confidence 4455566778899999999999987 4443 467776554
No 126
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=67.05 E-value=43 Score=36.55 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=28.5
Q ss_pred cCCCCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 004738 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (732)
Q Consensus 7 ~~~~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kP 67 (732)
....+-.|++.++|+|-=...- -.--.=|+++++||+..-..+
T Consensus 56 p~~~~~~r~VcisdtH~~~~~i------------------~~~p~gDvlihagdfT~~g~~ 98 (305)
T KOG3947|consen 56 PVGPGYARFVCISDTHELTFDI------------------NDIPDGDVLIHAGDFTNLGLP 98 (305)
T ss_pred CCCCCceEEEEecCcccccCcc------------------ccCCCCceEEeccCCccccCH
Confidence 3456778999999999542110 012345899999998765543
No 127
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=66.56 E-value=23 Score=38.80 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----hcCCCEEEEcCCCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----QKEVDFVLLGGDLFHE 64 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~-----e~~VD~VLlaGDLFh~ 64 (732)
....+|+++||+||.... .+++++.+++.-. ++-|-++|+.|++...
T Consensus 25 ~~~~~~VilSDV~LD~p~--------tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~ 76 (291)
T PTZ00235 25 DKRHNWIIMHDVYLDSPY--------TFEVLDKMLSLYVNTYPENELPVGFIFMGDFISL 76 (291)
T ss_pred CCceEEEEEEeeccCCHH--------HHHHHHHHHHHhhccCcccCCCeEEEEecCccCC
Confidence 345789999999998543 3556666666542 2348899999998765
No 128
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=63.76 E-value=25 Score=36.54 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCC
Q 004738 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNV 117 (732)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~ 117 (732)
+.+++++..+.+...|+|+++|=+ ......+..+++.+++. .
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~----gvt~~~~~~~v~~ik~~----------------------------------~ 52 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL----GIVESNLDQTVKKIKKI----------------------------------T 52 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC----CCCHHHHHHHHHHHHhh----------------------------------c
Confidence 556677778888899999999973 12334456667777753 3
Q ss_pred CCcEEEEcCCCCCCC
Q 004738 118 GLPVFSIHGNHDDPA 132 (732)
Q Consensus 118 ~IPVf~I~GNHD~p~ 132 (732)
.+||++-|||++.-+
T Consensus 53 ~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 53 NLPVILFPGNVNGLS 67 (205)
T ss_pred CCCEEEECCCccccC
Confidence 799999999999754
No 129
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=62.54 E-value=3.9 Score=38.18 Aligned_cols=14 Identities=93% Similarity=1.697 Sum_probs=6.1
Q ss_pred cCCCCCCCCCCCCC
Q 004738 584 TRGRGRGRGRGRGR 597 (732)
Q Consensus 584 ~~~~~~~~~~~~~~ 597 (732)
+|||++|+||||||
T Consensus 95 ~rgrgrg~Grg~~~ 108 (109)
T KOG3428|consen 95 GRGRGRGRGRGRGR 108 (109)
T ss_pred ccccccccccCCCC
Confidence 44444444444443
No 130
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=61.08 E-value=9.8 Score=43.43 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=18.4
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 004738 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh 63 (732)
...+||++.|..+..... +.++..++ ...++||+|+.||..-
T Consensus 103 ~~~~r~a~~SC~~~~~~~---------~~~~~~~a---~~~~~D~~l~lGD~IY 144 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY---------FPAYRRIA---ERDDPDFVLHLGDQIY 144 (453)
T ss_dssp ---EEEEEE----CCC------------HHHHHHT---T-S--SEEEE-S-SS-
T ss_pred CCceEEEEECCCCcccCh---------HHHHHhhh---ccCCCcEEEEeCCeee
Confidence 345999999999864211 33444443 3368999999999653
No 131
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=60.35 E-value=2.9 Score=49.32 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhcCC
Q 004738 38 EAFEEICSIAEQKEV 52 (732)
Q Consensus 38 ~aFeeIl~~A~e~~V 52 (732)
.+|+.+++++.++++
T Consensus 59 ~Ai~a~~DLcEDed~ 73 (556)
T PF05918_consen 59 EAINAQLDLCEDEDV 73 (556)
T ss_dssp HHHHHHHHHHT-SSH
T ss_pred HHHHHHHHHHhcccH
Confidence 355556666555543
No 132
>PF12235 FXR1P_C: Fragile X-related 1 protein C terminal; InterPro: IPR022034 Fragile X mental retardation 1 protein (FMR1P) , fragile X-related 1 protein (FXR1P) and fragile X-related 2 protein (FXR2P) are members of a small family of RNA-binding proteins that are thought to transport mRNA and to control their translation []. The proteins contain two KH domains and a RGG box that are characteristic motifs in RNA-binding proteins as well as nuclear localization and export signals. ; GO: 0003723 RNA binding; PDB: 2LA5_B.
Probab=59.49 E-value=4 Score=40.47 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCc
Q 004738 584 TRGRGRGRGRGRGRGANNL 602 (732)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~ 602 (732)
.||.....+|||||...+.
T Consensus 47 ~~g~r~y~gRGRGRRG~~~ 65 (155)
T PF12235_consen 47 GRGSRPYSGRGRGRRGPGY 65 (155)
T ss_dssp -------------------
T ss_pred ccccCCCCCCCCCCCCCCc
Confidence 4444455556666654443
No 133
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=46.90 E-value=40 Score=35.72 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCc
Q 004738 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLP 120 (732)
Q Consensus 41 eeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IP 120 (732)
+++++.+.+...|+|+++|=+ + ..++..++.++++. ..+|
T Consensus 22 ~~~~~~~~~~gtDai~VGGS~-~-----~~~~d~vv~~ik~~----------------------------------~~lP 61 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGSD-T-----GVTLDNVVALIKRV----------------------------------TDLP 61 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-ST-H-----CHHHHHHHHHHHHH----------------------------------SSS-
T ss_pred HHHHHHHHhcCCCEEEECCCC-C-----ccchHHHHHHHHhc----------------------------------CCCC
Confidence 566777789999999999987 2 23566778888764 4799
Q ss_pred EEEEcCCCCCCC
Q 004738 121 VFSIHGNHDDPA 132 (732)
Q Consensus 121 Vf~I~GNHD~p~ 132 (732)
|+.-|||++.-+
T Consensus 62 vilfPg~~~~vs 73 (230)
T PF01884_consen 62 VILFPGSPSQVS 73 (230)
T ss_dssp EEEETSTCCG--
T ss_pred EEEeCCChhhcC
Confidence 999999998654
No 134
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=44.96 E-value=58 Score=34.38 Aligned_cols=54 Identities=30% Similarity=0.407 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCC
Q 004738 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (732)
Q Consensus 40 FeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~I 119 (732)
..++++.+.+...|+|+++|=.-- ....+..++..++++ .+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~~-----------------------------------~l 56 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGV----TYEKTDTLIEALRRY-----------------------------------GL 56 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcc----cHHHHHHHHHHHhcc-----------------------------------CC
Confidence 356777888889999999997621 222345566666653 49
Q ss_pred cEEEEcCCCCCCC
Q 004738 120 PVFSIHGNHDDPA 132 (732)
Q Consensus 120 PVf~I~GNHD~p~ 132 (732)
||+.-|||++.-.
T Consensus 57 Pvilfp~~~~~i~ 69 (223)
T TIGR01768 57 PIILFPSNPTNVS 69 (223)
T ss_pred CEEEeCCCccccC
Confidence 9999999999754
No 135
>PRK09982 universal stress protein UspD; Provisional
Probab=44.02 E-value=47 Score=31.37 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 004738 40 FEEICSIAEQKEVDFVLLG 58 (732)
Q Consensus 40 FeeIl~~A~e~~VD~VLla 58 (732)
-+.|++.|.+.++|+|+++
T Consensus 92 ~~~I~~~A~~~~aDLIVmG 110 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCG 110 (142)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3778999999999998886
No 136
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=42.55 E-value=44 Score=37.23 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=45.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCC-EEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCccee
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD-~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e 92 (732)
-|.++.|+|--|. -+-++++.+....++ -.|+.||+.|...-+.++ +-+|-.|.
T Consensus 60 PV~i~GDiHGq~~------------DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~----i~LL~a~K--------- 114 (331)
T KOG0374|consen 60 PVKIVGDIHGQFG------------DLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLET----ICLLFALK--------- 114 (331)
T ss_pred CEEEEccCcCCHH------------HHHHHHHhcCCCCCcccEEEecccccCCccceEE----eehhhhhh---------
Confidence 4788999997643 123333333322243 378899999999877664 33333221
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 004738 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (732)
Q Consensus 93 ~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I~GNHD~p~g 133 (732)
+ ...--||.+.|||.....
T Consensus 115 ---------------i-------~yp~~~~lLRGNHE~~~i 133 (331)
T KOG0374|consen 115 ---------------I-------KYPENVFLLRGNHECASI 133 (331)
T ss_pred ---------------h-------hCCceEEEeccccccccc
Confidence 1 124569999999998653
No 137
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.55 E-value=82 Score=33.63 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCC
Q 004738 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (732)
Q Consensus 40 FeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~I 119 (732)
-.++++.+.+-..|+|+++|=+=. ..+.+..+++.++. +..+
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~gv----t~~~~~~~v~~ik~----------------------------------~~~l 71 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDGV----TEENVDNVVEAIKE----------------------------------RTDL 71 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcccc----cHHHHHHHHHHHHh----------------------------------hcCC
Confidence 467888889999999999996532 22345566666663 3479
Q ss_pred cEEEEcCCCCCCC
Q 004738 120 PVFSIHGNHDDPA 132 (732)
Q Consensus 120 PVf~I~GNHD~p~ 132 (732)
||+.-||||..-+
T Consensus 72 PvilfP~~~~~is 84 (240)
T COG1646 72 PVILFPGSPSGIS 84 (240)
T ss_pred CEEEecCChhccC
Confidence 9999999999754
No 138
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=40.77 E-value=38 Score=39.26 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004738 43 ICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (732)
Q Consensus 43 Il~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l 82 (732)
+...+++.-||.+=+.||+||.. |-+. +.|+-|-.|
T Consensus 182 la~~iqrLvVDhLHiVGDIyDRG-P~pd---~Imd~L~~y 217 (648)
T COG3855 182 LAYLIQRLVVDHLHIVGDIYDRG-PYPD---KIMDTLINY 217 (648)
T ss_pred HHHHHHHHhhhheeeecccccCC-CCch---HHHHHHhhc
Confidence 33445678899999999999986 4333 355655544
No 139
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=39.44 E-value=55 Score=35.29 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc---CCCEEEEcCCCCCCCCCChhHH
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK---EVDFVLLGGDLFHENKPSRSTL 72 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~---~VD~VLlaGDLFh~~kPs~~tl 72 (732)
+.++.|+|-- |..++++-+-- .----|+.||+.|...-|.+|+
T Consensus 45 vtvcGDIHGQ---------------f~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~ 90 (303)
T KOG0372|consen 45 VTVCGDIHGQ---------------FYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETF 90 (303)
T ss_pred cEEeecccch---------------HHHHHHHHHhCCCCCCCceEeecchhccccchHHHH
Confidence 5678888854 44444443321 1223588899999988777653
No 140
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=35.24 E-value=13 Score=44.14 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=1.8
Q ss_pred ccccccccc
Q 004738 522 AASFEDIRS 530 (732)
Q Consensus 522 ~~s~~~~~~ 530 (732)
--||.--+.
T Consensus 458 tlSWk~~~~ 466 (556)
T PF05918_consen 458 TLSWKEAKK 466 (556)
T ss_dssp --TTS----
T ss_pred ceeeeeccc
Confidence 455655333
No 141
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=35.12 E-value=83 Score=33.43 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhc--CCCE-EEEcCCCCCCCCCChhHHHHHHH
Q 004738 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDF-VLLGGDLFHENKPSRSTLVKAIE 77 (732)
Q Consensus 15 ILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~--~VD~-VLlaGDLFh~~kPs~~tl~~~~e 77 (732)
+-++.|+|-- |..++++-+.- =||- -++.||+.|...-|.++....+-
T Consensus 48 VTvCGDIHGQ---------------FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~ 98 (306)
T KOG0373|consen 48 VTVCGDIHGQ---------------FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLL 98 (306)
T ss_pred eeEeeccchh---------------HHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHH
Confidence 4578888854 44444443321 1332 57789999999888776544443
No 142
>PF15231 VCX_VCY: Variable charge X/Y family
Probab=34.75 E-value=29 Score=33.33 Aligned_cols=37 Identities=38% Similarity=0.470 Sum_probs=21.5
Q ss_pred ccCCcccccccccccCccccCCCCCccCCCCCCCCCCCCCC
Q 004738 558 TRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRG 598 (732)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (732)
||-||+||-++.|+-- + -.|.-.+||+..+||||-++
T Consensus 17 trKrKsssq~~ps~Pk--k--~~k~~kkGKa~~ggRg~KK~ 53 (147)
T PF15231_consen 17 TRKRKSSSQPSPSSPK--K--TPKVAKKGKAGRGGRGGKKR 53 (147)
T ss_pred cccccccCCCCCCCCc--c--ccchhhccccccCccccccc
Confidence 5678877766543322 1 33445567776666666555
No 143
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.64 E-value=1.4e+02 Score=25.91 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCC
Q 004738 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVG 118 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~ 118 (732)
...++++.+....+|+|++-.++.+.+ ...+++.|++. ...
T Consensus 31 ~~~~~~~~~~~~~~d~iiid~~~~~~~------~~~~~~~i~~~---------------------------------~~~ 71 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIIIDLELPDGD------GLELLEQIRQI---------------------------------NPS 71 (112)
T ss_dssp SHHHHHHHHHHSTESEEEEESSSSSSB------HHHHHHHHHHH---------------------------------TTT
T ss_pred CHHHHHHHhcccCceEEEEEeeecccc------ccccccccccc---------------------------------ccc
Confidence 357778888999999999998887743 23455556553 247
Q ss_pred CcEEEEcCCCCC
Q 004738 119 LPVFSIHGNHDD 130 (732)
Q Consensus 119 IPVf~I~GNHD~ 130 (732)
+|++++..++|.
T Consensus 72 ~~ii~~t~~~~~ 83 (112)
T PF00072_consen 72 IPIIVVTDEDDS 83 (112)
T ss_dssp SEEEEEESSTSH
T ss_pred ccEEEecCCCCH
Confidence 899999977774
No 144
>PRK15005 universal stress protein F; Provisional
Probab=33.58 E-value=94 Score=28.78 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCCEEEEc
Q 004738 39 AFEEICSIAEQKEVDFVLLG 58 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLla 58 (732)
..+.|++.|.++++|+|+++
T Consensus 95 p~~~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 95 PKDRILELAKKIPADMIIIA 114 (144)
T ss_pred HHHHHHHHHHHcCCCEEEEe
Confidence 34667888888888888875
No 145
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=33.01 E-value=54 Score=36.30 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=13.8
Q ss_pred HhcCCCEEEEcCCCCCCCCCC
Q 004738 48 EQKEVDFVLLGGDLFHENKPS 68 (732)
Q Consensus 48 ~e~~VD~VLlaGDLFh~~kPs 68 (732)
...++|+ +++|||.+..-++
T Consensus 69 ~~~dId~-~~aGDLlnQ~i~s 88 (329)
T PF07451_consen 69 KKEDIDY-LFAGDLLNQIISS 88 (329)
T ss_dssp -GGG-SE-EEEEETTCCCCHH
T ss_pred CHHHCeE-EEehhhhhhhHHH
Confidence 3567885 7899999987543
No 146
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=30.66 E-value=1.3e+02 Score=31.57 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCC
Q 004738 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (732)
Q Consensus 40 FeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~I 119 (732)
.+++...|.+...|+|+++|=.-- + .++..+++++++.+ . .+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v----~-~~~~~~~~~ik~~~--------------------------------~-~~ 55 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV----S-STLDNVVRLIKRIR--------------------------------R-PV 55 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch----h-hhHHHHHHHHHHhc--------------------------------C-CC
Confidence 355666677788999999997622 1 35667888887752 2 58
Q ss_pred cEEEEcCCCCCCC
Q 004738 120 PVFSIHGNHDDPA 132 (732)
Q Consensus 120 PVf~I~GNHD~p~ 132 (732)
||+.-|||++.-.
T Consensus 56 Pvilfp~~~~~i~ 68 (219)
T cd02812 56 PVILFPSNPEAVS 68 (219)
T ss_pred CEEEeCCCccccC
Confidence 9999999999653
No 147
>PRK10116 universal stress protein UspC; Provisional
Probab=30.44 E-value=1.3e+02 Score=27.90 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 004738 40 FEEICSIAEQKEVDFVLLG 58 (732)
Q Consensus 40 FeeIl~~A~e~~VD~VLla 58 (732)
.+.|++.|.+.++|+|+++
T Consensus 91 ~~~I~~~a~~~~~DLiV~g 109 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICG 109 (142)
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 3556666777777776664
No 148
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.06 E-value=1.4e+02 Score=33.54 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhH
Q 004738 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71 (732)
Q Consensus 10 ~~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~t 71 (732)
...+--++|.|+.++-.. -++.++|++.+++.++| ||++|=-|+-.+-..-|
T Consensus 48 ~eIv~TiiCGDnyf~en~---------eea~~~i~~mv~~~~pD-~viaGPaFnagrYG~ac 99 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENK---------EEALKKILEMVKKLKPD-VVIAGPAFNAGRYGVAC 99 (349)
T ss_pred CEEEEEEEECcchhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCCcCCchHHHHH
Confidence 344556778887766322 34788999999999999 58899999987655443
No 149
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=28.73 E-value=1.3e+02 Score=31.87 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCEEEEcCCC-CCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcE
Q 004738 43 ICSIAEQKEVDFVLLGGDL-FHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPV 121 (732)
Q Consensus 43 Il~~A~e~~VD~VLlaGDL-Fh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPV 121 (732)
.++.+.+...|+|+++|=+ .. ...+..++..+++ ..+||
T Consensus 24 ~~~~~~~~gtdai~vGGS~~vt-----~~~~~~~v~~ik~-----------------------------------~~lPv 63 (232)
T PRK04169 24 ALEAICESGTDAIIVGGSDGVT-----EENVDELVKAIKE-----------------------------------YDLPV 63 (232)
T ss_pred HHHHHHhcCCCEEEEcCCCccc-----hHHHHHHHHHHhc-----------------------------------CCCCE
Confidence 3366778899999999976 33 2334455555554 36899
Q ss_pred EEEcCCCCCCC
Q 004738 122 FSIHGNHDDPA 132 (732)
Q Consensus 122 f~I~GNHD~p~ 132 (732)
+.-|||++.-+
T Consensus 64 ilfp~~~~~i~ 74 (232)
T PRK04169 64 ILFPGNIEGIS 74 (232)
T ss_pred EEeCCCccccC
Confidence 99999999754
No 150
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=28.57 E-value=1.5e+02 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Q 004738 39 AFEEICSIAEQKEVDFVLLGGDL 61 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLlaGDL 61 (732)
..+.|++.+.+.++|+|+++--=
T Consensus 90 ~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 90 VADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSS
T ss_pred cchhhhhccccccceeEEEeccC
Confidence 56889999999999999998654
No 151
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=26.21 E-value=2.2e+02 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=21.7
Q ss_pred hcHHHHHHHHHHHHHh-cCCCEEEEcCCCCC
Q 004738 34 HDSFEAFEEICSIAEQ-KEVDFVLLGGDLFH 63 (732)
Q Consensus 34 ~Ds~~aFeeIl~~A~e-~~VD~VLlaGDLFh 63 (732)
.|..+.+.+.++.+.+ .++|+||.+|=.=-
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 4556667677666653 68999999998743
No 152
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=25.82 E-value=81 Score=34.21 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=40.5
Q ss_pred CCccEEEEEcCCC-CCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCC--CCCCCChhHHHHHHHHHHHh
Q 004738 10 ANTVRILVATDCH-LGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEILRRH 82 (732)
Q Consensus 10 ~~~mRILh~SD~H-LG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLF--h~~kPs~~tl~~~~elLr~l 82 (732)
+...+|+|+||.- .. +++.++.+++.+||+|+++|=.. =..+-+...+...++-|+++
T Consensus 174 dg~~~i~faSDvqGp~---------------~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~i 234 (304)
T COG2248 174 DGKSSIVFASDVQGPI---------------NDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERI 234 (304)
T ss_pred cCCeEEEEcccccCCC---------------ccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHH
Confidence 4567899999987 33 35667777788999999999754 11223445667777777765
No 153
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=25.51 E-value=1.9e+02 Score=29.30 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.8
Q ss_pred CCCCcEEEEcCCCCCCCCCC
Q 004738 116 NVGLPVFSIHGNHDDPAGVD 135 (732)
Q Consensus 116 n~~IPVf~I~GNHD~p~g~~ 135 (732)
...+|+++|--+||.....+
T Consensus 87 ~~~~p~~~iwDDHDi~~n~~ 106 (228)
T cd07389 87 LAQVPTIGIWDDHDIGDNWG 106 (228)
T ss_pred hhcCCEEEeccccccccccc
Confidence 35789999999999765543
No 154
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=25.01 E-value=55 Score=33.21 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=21.2
Q ss_pred CCCEEEeCcccccccCCcccCCCCceEecCCCC
Q 004738 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (732)
Q Consensus 245 ~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~ 277 (732)
+.++|+.||+|.+.+. ... +..++.|||-
T Consensus 168 ~~~~iV~GHTh~~~~~--~~~--~~i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKRPL--RLG--NVLYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCcce--EEC--CEEEEECCCC
Confidence 3589999999997642 332 3578899985
No 155
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=24.84 E-value=1.1e+03 Score=27.00 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=41.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 14 RILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
=|+++.|+=.|... .|....+.+++.=|++.++-.+.+.|.==|.+.-.+. +.|+.+..
T Consensus 103 lVVfTGD~i~g~~t------~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~---ql~~~i~~ 161 (379)
T KOG1432|consen 103 LVVFTGDNIFGHST------QDAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRL---QLMKFISK 161 (379)
T ss_pred EEEEeCCccccccc------HhHHHHHHHHhhhHhhcCCCeEEEecccccccccCHH---HHHHHHhc
Confidence 37778888777332 3456677888888999999999999986666655554 34445544
No 156
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=24.71 E-value=61 Score=33.50 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=21.8
Q ss_pred CCCEEEeCcccccccCCcccCCCCceEecCCCCc
Q 004738 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (732)
Q Consensus 245 ~~DyVa~GH~H~~~i~Pq~~~~~g~~I~yPGS~v 278 (732)
+.|+|+.||+|...+ .... +..++.|||..
T Consensus 179 ~~~~vv~GHTh~~~~--~~~~--~~i~IDtGs~~ 208 (218)
T PRK09968 179 GADYFIFGHMMFDNI--QTFA--NQIYIDTGSPK 208 (218)
T ss_pred CCCEEEECCCCcCcc--eeEC--CEEEEECCCCC
Confidence 468999999998654 2332 36789999853
No 157
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=24.63 E-value=2.2e+02 Score=31.65 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCC
Q 004738 38 EAFEEICSIAEQKEVDFVLLGGDLFH 63 (732)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLlaGDLFh 63 (732)
..+.++.++..+++||+||+.||-|.
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~ 105 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFE 105 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchH
Confidence 45577777888999999999999774
No 158
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.46 E-value=94 Score=36.26 Aligned_cols=66 Identities=15% Similarity=0.320 Sum_probs=40.2
Q ss_pred HHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHhccCCCCcceeeechhhhhcccccCccccCCCCCCCCCcEEEE
Q 004738 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSI 124 (732)
Q Consensus 45 ~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l~~gd~p~~~e~lSd~~~~F~~~f~~lNyedpn~n~~IPVf~I 124 (732)
+.+.+.+||.||++|=. |.. ...++..-.++|.++ +..+| +++
T Consensus 114 ~~I~~~~PDIILLaGGt-DGG--~~e~~l~NA~~La~~---------------------------------~~~~p-IIy 156 (463)
T TIGR01319 114 EAIEESNLDIILFAGGT-DGG--EEECGIHNAKMLAEH---------------------------------GLDCA-IIV 156 (463)
T ss_pred HHHhhcCCCEEEEeCCc-CCC--chHHHHHHHHHHHhc---------------------------------CCCCc-EEE
Confidence 33445699999999974 333 234444444555432 45677 567
Q ss_pred cCCCCCCCCCCCchHHHhhhhCCceEEc
Q 004738 125 HGNHDDPAGVDNLSAVDILSACNLVNYF 152 (732)
Q Consensus 125 ~GNHD~p~g~~~lsaldiL~~~glVn~F 152 (732)
.||.+.... ..++|...++..|+
T Consensus 157 AGN~~a~~~-----V~~il~~~~~~~~i 179 (463)
T TIGR01319 157 AGNKDIQDE-----VQEIFDHADIFYRI 179 (463)
T ss_pred eCCHHHHHH-----HHHHHhcCCceEEe
Confidence 899997532 23678766655444
No 159
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=24.11 E-value=1.4e+02 Score=33.18 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCC
Q 004738 38 EAFEEICSIAEQKEVDFVLLGGDLF 62 (732)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLlaGDLF 62 (732)
.++.++-+...+++||+||+-||-|
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRN 78 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 3456666777889999999999976
No 160
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.12 E-value=2.8e+02 Score=27.06 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004738 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l 82 (732)
+-+++++.|++++||+|.++.=+.+. ...+..+++.|++.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~----~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHG----EIDCKGLRQKCDEA 79 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccC----HHHHHHHHHHHHHC
Confidence 45899999999999999998766542 33456677777653
No 161
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.04 E-value=4.4e+02 Score=24.53 Aligned_cols=39 Identities=31% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
..+++++.|.+.++|+|++++-.-+ ....+...++.|++
T Consensus 38 p~e~~~~~a~~~~~d~V~iS~~~~~----~~~~~~~~~~~L~~ 76 (122)
T cd02071 38 TPEEIVEAAIQEDVDVIGLSSLSGG----HMTLFPEVIELLRE 76 (122)
T ss_pred CHHHHHHHHHHcCCCEEEEcccchh----hHHHHHHHHHHHHh
Confidence 3578999999999999999987532 23334455555554
No 162
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.93 E-value=3.3e+02 Score=26.19 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 38 ~aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
.+-+++++.|+++++|+|.+++=+-. ....+..+++.|++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDK 79 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHh
Confidence 45689999999999999999986632 22334445555544
No 163
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=20.82 E-value=1.7e+02 Score=31.44 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCC
Q 004738 37 FEAFEEICSIAEQKEVDFVLLGGDLF 62 (732)
Q Consensus 37 ~~aFeeIl~~A~e~~VD~VLlaGDLF 62 (732)
.....++...+.+.+||+|++.||.+
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~ 99 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTN 99 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 44556777788889999999999854
No 164
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.53 E-value=3.4e+02 Score=24.74 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHH
Q 004738 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~ 81 (732)
..+++++.+.+.+||+|.++.=..+ ....+...++.+++
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~----~~~~~~~~i~~l~~ 76 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTT----HMTLMKEVIEELKE 76 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----cHHHHHHHHHHHHH
Confidence 4678999999999999999875433 23445556666665
No 165
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.52 E-value=2.4e+02 Score=24.43 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.1
Q ss_pred CccEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHhcCCCEEEEcCC
Q 004738 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60 (732)
Q Consensus 11 ~~mRILh~SD~HLG~~e~d~~R~~Ds~~aFeeIl~~A~e~~VD~VLlaGD 60 (732)
..||||++.--+.. | +..+...|+.+.+..++++|+.|.
T Consensus 2 ~g~rVli~GgR~~~----D-------~~~i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 2 EGMRVLITGGRDWT----D-------HELIWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred CCCEEEEEECCccc----c-------HHHHHHHHHHHHHhCCCEEEEECC
Confidence 46899998765543 1 334556677777778999888774
No 166
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.05 E-value=6.3e+02 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCChhHHHHHHHHHHHh
Q 004738 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (732)
Q Consensus 39 aFeeIl~~A~e~~VD~VLlaGDLFh~~kPs~~tl~~~~elLr~l 82 (732)
.-+++++.|+++++|+|.+++=+-+. ...+.++++.|++.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~----~~~~~~~~~~l~~~ 77 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHG----EIDCKGLREKCDEA 77 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCC----HHHHHHHHHHHHHC
Confidence 45899999999999999998765543 34456777777764
Done!