BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004739
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 138
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 139 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 187
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 188 --SSSYDGLCRIWDTASG 203
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 250 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 231 AATLDNTLKLW 241
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 225 --NGKYILAATLDNTLKLWDYSK 245
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 275
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 276 SGSEDNLVYIWNL 288
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 554 ETVDANXXXXXXXXXXQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 613
ET A Q+ P +P +K GH + +K G+++AS
Sbjct: 9 ETEAARAQPTPSSSATQSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLAS 62
Query: 614 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
S D IW G+ K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 63 SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 118
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 250 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 308
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 309 CHP--TENIIASAALENDKTIKLW 330
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 172 --SSSYDGLCRIWDTASG 187
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 215 AATLDNTLKLW 225
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 209 --NGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 259
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 260 SGSEDNLVYIWNL 272
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 9 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 292
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 293 CHP--TENIIASAALENDKTIKLW 314
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 140
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 141 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 189
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 190 --SSSYDGLCRIWDTASG 205
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 252 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 233 AATLDNTLKLW 243
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 227 --NGKYILAATLDNTLKLWDYSK 247
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 277
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 278 SGSEDNLVYIWNL 290
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 554 ETVDANXXXXXXXXXXQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 613
ET A Q+ P +P +K GH + +K G+++AS
Sbjct: 11 ETEAARAQPTPSSSATQSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLAS 64
Query: 614 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
S D IW G+ K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 65 SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 120
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 252 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 310
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 311 CHP--TENIIASAALENDKTIKLW 332
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 166 --SSSYDGLCRIWDTASG 181
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 209 AATLDNTLKLW 219
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 203 --NGKYILAATLDNTLKLWDYSK 223
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 253
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 254 SGSEDNLVYIWNL 266
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 3 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 286
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 287 CHP--TENIIASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 166 --SSSYDGLCRIWDTASG 181
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 228 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 209 AATLDNTLKLW 219
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 203 --NGKYILAATLDNTLKLWDYSK 223
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 253
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 254 SGSEDNLVYIWNL 266
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 3 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 286
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 287 CHP--TENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 112
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 113 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 161
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 162 --SSSYDGLCRIWDTASG 177
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 224 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 205 AATLDNTLKLW 215
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 199 --NGKYILAATLDNTLKLWDYSK 219
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 249
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 250 SGSEDNLVYIWNL 262
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 575 PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML 634
P +P +K GH + +K G+++AS S D IW G+ K +
Sbjct: 4 PVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGKFEKTI 57
Query: 635 LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
G + ++ V ++ ++ D T+KIW S+
Sbjct: 58 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 92
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 282
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 283 CHP--TENIIASAALENDKTIKLW 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 172 --SSSYDGLCRIWDTASG 187
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 215 AATLDNTLKLW 225
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 209 --NGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 259
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 260 SGSEDNLVYIWNL 272
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 9 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 292
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 293 CHP--TENIIASAALENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 117
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 118 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 166
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 167 --SSSYDGLCRIWDTASG 182
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 229 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 210 AATLDNTLKLW 220
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 204 --NGKYILAATLDNTLKLWDYSK 224
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 254
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 255 SGSEDNLVYIWNL 267
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 4 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 57
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 58 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 97
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 229 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 287
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 288 CHP--TENIIASAALENDKTIKLW 309
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 115
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 116 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 164
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 165 --SSSYDGLCRIWDTASG 180
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 227 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 208 AATLDNTLKLW 218
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 202 --NGKYILAATLDNTLKLWDYSK 222
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 252
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 253 SGSEDNLVYIWNL 265
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 575 PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML 634
P +P +K GH + +K G+++AS S D IW G+ K +
Sbjct: 7 PVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGKFEKTI 60
Query: 635 LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
G + ++ V ++ ++ D T+KIW S+
Sbjct: 61 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 95
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 172 --SSSYDGLCRIWDTASG 187
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 234 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 215 AATLDNTLKLW 225
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 209 --NGKYILAATLDNTLKLWDYSK 229
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 259
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 260 SGSEDNLVYIWNL 272
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 9 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 121
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 122 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 170
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 171 --SSSYDGLCRIWDTASG 186
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 233 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 214 AATLDNTLKLW 224
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 208 --NGKYILAATLDNTLKLWDYSK 228
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 258
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 259 SGSEDNLVYIWNL 271
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 8 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 61
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 101
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 233 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 291
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 292 CHP--TENIIASAALENDKTIKLW 313
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 133
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 134 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 182
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 183 --SSSYDGLCRIWDTASG 198
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 245 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 226 AATLDNTLKLW 236
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 220 --NGKYILAATLDNTLKLWDYSK 240
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 270
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 271 SGSEDNLVYIWNL 283
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 570 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR 629
Q+ P +P +K GH + +K G+++AS S D IW G+
Sbjct: 20 QSKPTPVKPNYA--LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 630 LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
K + G + ++ V ++ ++ D T+KIW S+
Sbjct: 74 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 113
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 245 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 303
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 304 CHP--TENIIASAALENDKTIKLW 325
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 169 --SSSYDGLCRIWDTASG 184
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 212 AATLDNTLKLW 222
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 206 --NGKYILAATLDNTLKLWDYSK 226
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 256
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 257 SGSEDNLVYIWNL 269
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 169 --SSSYDGLCRIWDTASG 184
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK++
Sbjct: 290 CHPTENIIASAALENDKTIKLY 311
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 212 AATLDNTLKLW 222
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 206 --NGKYILAATLDNTLKLWDYSK 226
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 256
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 257 SGSEDNLVYIWNL 269
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 290 CHP--TENIIASAALENDKTIKLY 311
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC 643
+K GH + +K G+++AS S D IW G+ K + G + ++
Sbjct: 18 LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 644 VQCHPFDCVVATSGIDNTIKIWTPSA 669
V ++ ++ D T+KIW S+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P+++ L+VSG+ D VR++++ +G+ L + H R L V
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 132 VWSASEDGTLRQHDFRQG 149
S+S DG R D G
Sbjct: 169 --SSSYDGLCRIWDTASG 184
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKI 664
CHP + ++A++ ++N TIK+
Sbjct: 290 CHPTENIIASAALENDKTIKL 310
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 212 AATLDNTLKLW 222
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L H V+A+ +N GSL++S S D +W +S + L ++ + V KF P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 73 ETSDELVVSGAGDAEVRLFNLSR 95
+ + +++ D ++L++ S+
Sbjct: 206 --NGKYILAATLDNTLKLWDYSK 226
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVV 80
V+ + ++ G +++ + D + +W YS K L + TGH +C T + +V
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIV 256
Query: 81 SGAGDAEVRLFNL 93
SG+ D V ++NL
Sbjct: 257 SGSEDNLVYIWNL 269
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++LF
Sbjct: 290 CHP--TENIIASAALENDKTIKLF 311
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNC 643
+K GH + +K G+++AS S D IW G+ K + G + ++
Sbjct: 18 LKFTLAGHTKAVSSVK----FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 644 VQCHPFDCVVATSGIDNTIKIWTPSA 669
V ++ ++ D T+KIW S+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSS 99
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72 PETSDELVVSGAGDAEVRLFNL 93
P+++ L+VSG+ D VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L+GH V ++N + +L++SGS D + +W + L ++ HS V F
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNR 162
Query: 73 ETSDELVVSGAGDAEVRLFNLSRFSGRGL-----DDNAITPSALYQCHTRRVKKLAVEVG 127
+ S L+VS + D R+++ + SG+ L DDN + + + + LA +
Sbjct: 163 DGS--LIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYI--LAATLD 216
Query: 128 NPHVVWSASEDGTLRQH 144
N +W S+ L+ +
Sbjct: 217 NDLKLWDYSKGKCLKTY 233
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 655 TSGIDNTIKIW 665
+ +DN +K+W
Sbjct: 212 AATLDNDLKLW 222
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 290 CHP--TENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E+ + GH+ ++ ++W+S +LL+S SDD + +W SS K L +++ GHS VFC F
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 72 PETSDELVVSGAGDAEVRLFNL 93
P+++ L+VSG+ D VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+ Y GH N I A+F G +I SGS+D +IW QT +++ L G VV
Sbjct: 231 KTYTGHKNEKYCI-FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 646 CHPFDCVVATSGIDN--TIKIW 665
CHP + ++A++ ++N TIK+W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVA 654
+D A + G I S S DG IW+ +G+ +K L+ D+ V+ V+ P +
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 655 TSGIDNTIKIW 665
+ +DNT+K+W
Sbjct: 212 AATLDNTLKLW 222
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
+ + S SDD IW+ +G+ +K L G V C +P ++ + D +++IW
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L+GH V ++N + +L++SGS D + +W + L ++ HS V F
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLP-AHSDPVSAVHFNR 162
Query: 73 ETSDELVVSGAGDAEVRLFNLSRFSGRGL-----DDNAITPSALYQCHTRRVKKLAVEVG 127
+ S L+VS + D R+++ + SG+ L DDN + + + + LA +
Sbjct: 163 DGS--LIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVKFSPNGKYI--LAATLD 216
Query: 128 NPHVVWSASEDGTLRQH 144
N +W S+ L+ +
Sbjct: 217 NTLKLWDYSKGKCLKTY 233
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 13 RELEGHQG---CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ GH+ C+ A + G ++SGS+D + +W+ +++++ ++ GH+ V T
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ-GHTDVVISTA 289
Query: 70 FVPETSDELVVSGA--GDAEVRLF 91
P ++ ++ S A D ++L+
Sbjct: 290 CHP--TENIIASAALENDKTIKLW 311
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 68
++ R L GH+ VN + ++ K ++S S D I VW+ S+ + + ++ GH + C
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACL 302
Query: 69 KFVPETSDELVVSGAGDAEVRLFNL 93
++ D LVVSG+ D +RL+++
Sbjct: 303 QY----RDRLVVSGSSDNTIRLWDI 323
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
R L GH+ + + + + L++SGS D I +W L +E GH V C +F
Sbjct: 290 RTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF-- 344
Query: 73 ETSDELVVSGAGDAEVRLFNL 93
++ +VSGA D ++++++L
Sbjct: 345 --DNKRIVSGAYDGKIKVWDL 363
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG-IDNTI 662
L R + SGS D +W+ + G +++L G E +V C++ FD SG D I
Sbjct: 302 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR---FDNKRIVSGAYDGKI 358
Query: 663 KIWTPSASV 671
K+W A++
Sbjct: 359 KVWDLVAAL 367
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
YI S S D +W T ++ L G + + C+Q D +V + DNTI++W
Sbjct: 268 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW 321
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 33 LLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90
++++ S D I VW +S L + GH A V F D+ +VS +GD +++
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVSASGDRTIKV 280
Query: 91 FNLS 94
+N S
Sbjct: 281 WNTS 284
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 68
L +R L GH G V + ++ + ++I+GS D+ + VW ++ ++L+++ H V
Sbjct: 163 LECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHL 219
Query: 69 KFVPETSDELVVSGAGDAEVRLFNLS 94
+F ++ ++V+ + D + +++++
Sbjct: 220 RF----NNGMMVTCSKDRSIAVWDMA 241
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
I SG D IW+K T ++L G V C+Q + V+ T D+T+++W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVW 198
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 436
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ D+ + S + D V+L+N
Sbjct: 437 D--DQTIASASDDKTVKLWN 454
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH VN +++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 313
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 314 D--GQTIASASDDKTVKLWN 331
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 559
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 560 D--GQTIASASSDKTVKLWN 577
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + VN V P +A++ D T+K+W
Sbjct: 233 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKL-SRNREH 704
+ + S V G A PD + A + KL +RN +H
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 149
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 150 D--GQTIASASDDKTVKLWN 167
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 68
+ + LE H V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGV 63
Query: 69 KFVPETSDELVVSGAGDAEVRLFN 92
F P+ + + S + D V+L+N
Sbjct: 64 AFSPD--GQTIASASDDKTVKLWN 85
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V+ F P
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 190
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 191 D--GQTIASASDDKTVKLWN 208
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + + L TGHS++V+ F P
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--QTLTGHSSSVWGVAFSP 354
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 355 D--GQTIASASDDKTVKLWN 372
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 518
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 519 D--GQTIASASDDKTVKLWN 536
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P D +A++ D T+K+W
Sbjct: 397 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 510
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVNGVAFRP 272
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 273 D--GQTIASASDDKTVKLWN 290
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 108
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 109 D--GQTIASASDDKTVKLWN 126
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 231
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 232 D--GQTIASASDDKTVKLWN 249
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ G + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 395
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 396 D--GQTIASASDDKTVKLWN 413
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 356 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 469
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 69 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 182
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 192 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V+G A PD + A + KL NR +LL+ H S
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 305
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 28 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 87 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 141
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 151 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 209
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 264
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 110 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 223
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ L GH V ++++ + S SDD + +W+ + +LL ++ TGHS++V F P
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVRGVAFSP 477
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + + S + D V+L+N
Sbjct: 478 D--GQTIASASDDKTVKLWN 495
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 670
IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W +
Sbjct: 441 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 671 V-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ S V G A PD + A + KL NR +LL+ H S
Sbjct: 500 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 551
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 479 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKL 698
+ + S V G A PD + A KL
Sbjct: 538 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
G IAS SDD +W + G+L++ L G + V V P +A++ D T+K+W
Sbjct: 520 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTP 667
G IAS SDD +W + G+ ++ L G + V V P +A++ D T+K+W
Sbjct: 315 GQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373
Query: 668 SASV-------PSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFS 720
+ + S V G A PD + A + KL NR +LL+ H S
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNG----QLLQTLTGHSSS 428
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
R L+GH G V ++ W + + ++S S D + VW+ + + H+I+ H V F P
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAP 118
Query: 73 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132
+ + V G D+ +FNLS + R D + S + H
Sbjct: 119 --NGQSVACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGY-------------- 159
Query: 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD---PPKQTLSLKS 189
AS + + R GS Q C +L D+ G + S+ P T + S
Sbjct: 160 --ASSCQYVPDQETRL-----ITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 190 CDISSTRPHLLLVGGSDAFARLYDRRM 216
I+S ++ + G D RL+D R+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRI 237
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 13 RELEGHQGCVNAISW-NSKGSLLISGSDDTHINVWSYSSRKLLH----SIETGHSANVFC 67
R L GH+G ++ + + + LI+GS D +W ++ + + +GH+A+V
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 68 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 127
+ + + +SG+ D VRL++L R + R + Y H + +
Sbjct: 211 LS-INSLNANMFISGSCDTTVRLWDL-RITSRAV--------RTYHGHEGDINSVKF-FP 259
Query: 128 NPHVVWSASEDGTLRQHDFRQG 149
+ + S+DGT R D R G
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTG 281
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLL 54
H+G ++ + +S GS L +GS D ++ +W++S RK++
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 81
+ ++ ++ G L +G++D I +W +RK++ ++ GH +++ + P S + +VS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--SGDKLVS 182
Query: 82 GAGDAEVRLFNL 93
G+GD VR+++L
Sbjct: 183 GSGDRTVRIWDL 194
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 588 YVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE------AVV 641
Y+GH D + Q +YI SGS D W+K++G + ML G AV
Sbjct: 306 YIGH----KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
Query: 642 NCVQCHPFDCVVATSGIDNTIKIWTPSASVPS 673
N P V AT D +IW P+
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIWKYKKIAPN 393
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 5 LVRRLSQEREL-EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA 63
LV RL E E GH+ V ++ + G ++SGS D + +W+ + +T +S
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 64 NV---------FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC 114
F +DE ++SG+ D V + D + P + Q
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW----------DKKSGNPLLMLQG 350
Query: 115 HTRRVKKLAVEVG 127
H V +AV G
Sbjct: 351 HRNSVISVAVANG 363
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-DCVVATSGIDNTIKIW 665
G ++A+G++D IW+ + +++ +L G E + + P D +V+ SG D T++IW
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-DRTVRIW 192
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIW 665
GD + SGS D IW+ +TG+ + L E V V P D +A +D +++W
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVP 72
L+GH+ + ++ + G L+SGS D + +W + + L SIE G T V
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-----VTTVAVS 215
Query: 73 ETSDELVVSGAGDAEVRLFN 92
+ + +G+ D VR+++
Sbjct: 216 PGDGKYIAAGSLDRAVRVWD 235
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGD--------EAVVNCVQCHPFDCVVATSGID 659
G YIA+GS D +W+ +TG L++ L + ++V + V VV+ S +D
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LD 277
Query: 660 NTIKIW 665
++K+W
Sbjct: 278 RSVKLW 283
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
Q L+GH V ++W S G L SG +D + +W S + +T H+A V +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAW 267
Query: 71 VPETSDELVVSGAG-DAEVRLFNLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
P S+ L G D ++ +N + + +D + S ++ H++ + N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 129 PHVVWSASEDGTLRQHDF 146
+WS S G +Q D
Sbjct: 328 NLSIWSYSSSGLTKQVDI 345
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 56
LS EL+GH GCV +++ G LL +G D+ I +W+ S +LLHS
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+++ H+ V +++S S + + S D + +W ++ KL+H+ + HS V C F +
Sbjct: 659 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNK 717
Query: 74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 133
++ L+ +G+ D ++L++L++ R + ++ HT V + ++
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECR---------NTMFG-HTNSVNHCRFS-PDDELLA 766
Query: 134 SASEDGTLRQHDFRQGS 150
S S DGTLR D R +
Sbjct: 767 SCSADGTLRLWDVRSAN 783
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
ER+ HQG V + + +S + S S D +WS+ LH ++ GH+ V C+ F
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFS 1143
Query: 72 PETSDELVVSGAGDAEVRLFNLS 94
+ L+ +G + E+R++N+S
Sbjct: 1144 LDGI--LLATGDDNGEIRIWNVS 1164
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 76
GH+ V I + + G LIS S+D+ I VW++ + + H V K D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETV---KDFRLLQD 1062
Query: 77 ELVVSGAGDAEVRLFNLSRFSGR 99
++S + D V+++N+ +GR
Sbjct: 1063 SRLLSWSFDGTVKVWNV--ITGR 1083
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD----CVVATSGIDNTIKIW 665
YIA+ S D + IW+ TG+L+ VNC CH + ++AT D +K+W
Sbjct: 678 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLW 735
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
TD + Q G IAS D +++ +TG + + E V C D +AT
Sbjct: 622 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 681
Query: 656 SGIDNTIKIW 665
D +KIW
Sbjct: 682 CSADKKVKIW 691
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 56
LS EL+GH GCV +++ G LL +G D+ I +W+ S +LLHS
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+++ H+ V +++S S + + S D + +W ++ KL+H+ + HS V C F +
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNK 710
Query: 74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 133
++ L+ +G+ D ++L++L++ R N + HT V + ++
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECR----NTMFG------HTNSVNHCRFS-PDDELLA 759
Query: 134 SASEDGTLRQHDFRQGS 150
S S DGTLR D R +
Sbjct: 760 SCSADGTLRLWDVRSAN 776
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
ER+ HQG V + + +S + S S D +WS+ LH ++ GH+ V C+ F
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFS 1136
Query: 72 PETSDELVVSGAGDAEVRLFNLS 94
+ L+ +G + E+R++N+S
Sbjct: 1137 LDGI--LLATGDDNGEIRIWNVS 1157
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD 76
GH+ V I + + G LIS S+D+ I VW++ + + H V K D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETV---KDFRLLQD 1055
Query: 77 ELVVSGAGDAEVRLFNLSRFSGR 99
++S + D V+++N+ +GR
Sbjct: 1056 SRLLSWSFDGTVKVWNV--ITGR 1076
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD----CVVATSGIDNTIKIW 665
YIA+ S D + IW+ TG+L+ VNC CH + ++AT D +K+W
Sbjct: 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLW 728
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
TD + Q G IAS D +++ +TG + + E V C D +AT
Sbjct: 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT 674
Query: 656 SGIDNTIKIW 665
D +KIW
Sbjct: 675 CSADKKVKIW 684
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 13 RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
R L GH G V W+S + +++ISGS D + VW+ + + +H++ GH++ V C
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHL 207
Query: 71 VPETSDELVVSGAGDAEVRLFNLS------------------RFSGRGLDDNAI------ 106
++ VVSG+ DA +R++++ ++ GR + A
Sbjct: 208 ----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 107 ----TPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160
T + L+ Q HT RV L + HVV S S D ++R D G +C + HQ
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD--GIHVV-SGSLDTSIRVWDVETG-NCIHTLTGHQ 319
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90
G+ ++SGSDD + VWS + K L ++ GH+ V+ ++ D +++SG+ D +++
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQM----RDNIIISGSTDRTLKV 183
Query: 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149
+N + LY HT V+ + + VV S S D TLR D G
Sbjct: 184 WNA---------ETGECIHTLYG-HTSTVR--CMHLHEKRVV-SGSRDATLRVWDIETG 229
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L+GH V ++ ++ G ++SGS DT I VW + +H++ TGH + E
Sbjct: 275 LQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQS----LTSGMEL 327
Query: 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134
D ++VSG D+ V+++++ +G+ L Q + + N + V +
Sbjct: 328 KDNILVSGNADSTVKIWDIK--TGQCLQT--------LQGPNKHQSAVTCLQFNKNFVIT 377
Query: 135 ASEDGTLRQHDFRQG 149
+S+DGT++ D + G
Sbjct: 378 SSDDGTVKLWDLKTG 392
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG-IDNTIKIWTP 667
+ SGS D +W+ +TG+ + +L+G A V CVQ +D SG D +K+W P
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ---YDGRRVVSGAYDFMVKVWDP 266
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
G+ I SGSDD +W TG+ ++ L+G V Q D ++ + D T+K+W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD-CVVATSGIDNTIKIW 665
+ + + SG+ D IW+ +TG+ ++ L G + V C F+ V TS D T+K+W
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 666 TPSA-----SVPSIVSGGAAG 681
++ ++ SGG+ G
Sbjct: 388 DLKTGEFIRNLVTLESGGSGG 408
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
R + I SGS D +W +TG I L G + V C+ H V + D T+++W
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR--DATLRVW 224
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
G ++ SGS D +W+ +TG I L G +++ + ++ D ++ + D+T+KIW
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 344
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 15 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
++ H VN +S+N +L +GS D + +W + KL LHS E+ H +F ++ P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 327
Query: 73 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 328 HNETILASSGT-DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 129 PHVVWSASEDGTLR 142
P V+ S SED ++
Sbjct: 387 PWVICSVSEDNIMQ 400
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 15 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLL--HSIETGHSANVFC 67
L GHQ +SWN S L+S SDD I +W S+ K++ +I TGH+A V
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 68 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 127
+ + L S A D ++ +++ +N PS HT V L+
Sbjct: 233 VSW-HLLHESLFGSVADDQKLMIWDTRS-------NNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 128 NPHVVWSASEDGTLRQHDFR 147
+ ++ + S D T+ D R
Sbjct: 285 SEFILATGSADKTVALWDLR 304
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ R GH V +++++S ++SGS D I +W+ + HS V C +
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 70 FVPETSDELVVSGAGDAEVRLFNLS 94
F P +S+ ++VS D V+++NL+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLA 180
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
+R L GH V+ + +S G +SGS D + +W ++ GH+ +V F
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAF- 113
Query: 72 PETSDELVVSGAGDAEVRLFN 92
+ + +VSG+ D ++L+N
Sbjct: 114 -SSDNRQIVSGSRDKTIKLWN 133
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
GH G +N ++ + GSL SG D +W + K L++++ G N C F P
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC--FSPN 244
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 579 ETVIDMKQRYV-GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 637
ET + QR + GH + +D+ + G + SGS DG +W+ TG + +G
Sbjct: 49 ETNYGIPQRALRGHSHFVSDV----VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 104
Query: 638 EAVVNCVQCHPFDCVVATSGIDNTIKIW 665
V V + + + D TIK+W
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
+ R GH V +++++S ++SGS D I +W+ + HS V C +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 70 FVPETSDELVVSGAGDAEVRLFNLS 94
F P +S+ ++VS D V+++NL+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLA 203
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
+R L GH V+ + +S G +SGS D + +W ++ GH+ +V F
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAF- 136
Query: 72 PETSDELVVSGAGDAEVRLFN 92
+ + +VSG+ D ++L+N
Sbjct: 137 -SSDNRQIVSGSRDKTIKLWN 156
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
GH G +N ++ + GSL SG D +W + K L++++ G N C F P
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC--FSP 266
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 579 ETVIDMKQRYV-GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 637
ET + QR + GH + +D+ + G + SGS DG +W+ TG + +G
Sbjct: 72 ETNYGIPQRALRGHSHFVSDV----VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH 127
Query: 638 EAVVNCVQCHPFDCVVATSGIDNTIKIW 665
V V + + + D TIK+W
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 15 LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
++ H VN +S+N ++ +GS D + +W + KL LHS E+ H +F ++ P
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 335
Query: 73 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 336 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 129 PHVVWSASEDGTLR 142
P ++ S SED ++
Sbjct: 395 PWIICSVSEDNIMQ 408
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 15 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH------SIETGHSANV-- 65
L GHQ +SWN L+S SDD I +W ++ H +I TGH+A V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
+ E+ L S A D ++ +++ ++N PS HT V L+
Sbjct: 241 VAWHLLHES---LFGSVADDQKLMIWDTR-------NNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 126 VGNPHVVWSASEDGTLRQHDFR 147
+ ++ + S D T+ D R
Sbjct: 291 PYSEFILATGSADKTVALWDLR 312
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 15 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
++ H VN +S+N +L +GS D + +W + KL LHS E+ H +F ++ P
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 333
Query: 73 ETSDELVVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSAL---YQCHTRRVKKLAVEVGN 128
L SG D + +++LS+ + +D P L + HT ++ +
Sbjct: 334 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 129 PHVVWSASEDGTLR 142
P ++ S SED ++
Sbjct: 393 PWIICSVSEDNIMQ 406
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 15 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH------SIETGHSANV-- 65
L GHQ +SWN L+S SDD I +W ++ H +I TGH+A V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
+ E+ L S A D ++ +++ ++N PS HT V L+
Sbjct: 239 VAWHLLHES---LFGSVADDQKLMIWDTR-------NNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 126 VGNPHVVWSASEDGTLRQHDFR 147
+ ++ + S D T+ D R
Sbjct: 289 PYSEFILATGSADKTVALWDLR 310
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 15 LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
++ H VN +S+N ++ +GS D + +W + KL LHS E+ H +F ++ P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSP 331
Query: 73 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 332 HNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 129 PHVVWSASEDGTLR 142
P ++ S SED ++
Sbjct: 391 PWIICSVSEDNIMQ 404
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 15 LEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLH------SIETGHSANV-- 65
L GHQ +SWN L+S SDD I +W ++ H +I TGH+A V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
+ E+ L S A D ++ +++ ++N PS HT V L+
Sbjct: 237 VAWHLLHES---LFGSVADDQKLMIWDTR-------NNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 126 VGNPHVVWSASEDGTLRQHDFR 147
+ ++ + S D T+ D R
Sbjct: 287 PYSEFILATGSADKTVALWDLR 308
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+L GH G V A+ + + G +L+SGS D + VW H E GH++ V C V
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEY 214
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
+ + +V+G+ D + ++ L +
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPK 236
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L GH V +S G++++SGS D + VW + K L+ I +GH+ ++ T + E
Sbjct: 266 LRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLY-ILSGHTDRIYSTIYDHER 322
Query: 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134
+ +S + D +R+++L +N L Q HT V L + + +V S
Sbjct: 323 --KRCISASMDTTIRIWDL---------ENGELMYTL-QGHTALVGLL--RLSDKFLV-S 367
Query: 135 ASEDGTLRQHD 145
A+ DG++R D
Sbjct: 368 AAADGSIRGWD 378
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L GH + + ++ + IS S DT I +W + +L+++++ GH+A V +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRL---- 360
Query: 75 SDELVVSGAGDAEVRLFNLSRFS 97
SD+ +VS A D +R ++ + +S
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS 383
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKF 70
+ + GH V +++++ ++SG D + VW+ + +H++ G H+ V C +F
Sbjct: 102 QYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRF 160
Query: 71 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
P ++VSG D V++++L+ +GR + D + HT V + V
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLA--TGRLVTD--------LKGHTNYVTSVTVSPDGSL 210
Query: 131 VVWSASEDGTLRQHDFRQGSS 151
S+ +DG R D +G +
Sbjct: 211 CA-SSDKDGVARLWDLTKGEA 230
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 2 HSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH 61
HSS +R LEGH V+ ++ ++ G+ +S S D + +W+ + + + GH
Sbjct: 50 HSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF-LGH 108
Query: 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93
+ +V F P+ + +VSG D +R++N+
Sbjct: 109 TKDVLSVAFSPD--NRQIVSGGRDNALRVWNV 138
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 28/117 (23%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
+R GH +D+ L G++ S S D +W Q G+ LG V V
Sbjct: 61 RRLEGHSAFVSDVA----LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA 116
Query: 646 CHPFDCVVATSGIDNTIKIW------------------------TPSASVPSIVSGG 678
P + + + G DN +++W +PS P IVSGG
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
I SG D +W+ TGRL+ L G V V P + A+S D ++W
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+L+GH V +++ + GSL S D +W + + L + G N C F P
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC--FSP- 247
Query: 74 TSDELVVSGAGDAEVRLFNL 93
+ + A + +R+F+L
Sbjct: 248 --NRYWMCAATEKGIRIFDL 265
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+L GH G V A+ + + G +L+SGS D + VW H E GH++ V C V
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEY 214
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
+ + +V+G+ D + ++ L +
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPK 236
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
Q L GH V + + +I+G+DD I V+ ++K L + +GH V+ K+
Sbjct: 113 QRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQL-SGHDGGVWALKY 170
Query: 71 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL-AVEVGNP 129
++VSG+ D VR++++ + + +++ H V+ L VE N
Sbjct: 171 ---AHGGILVSGSTDRTVRVWDIKKGC----------CTHVFEGHNSTVRCLDIVEYKNI 217
Query: 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159
+ + S D TL + SS P G H
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L GH V +S G++++SGS D + VW + K L+ I +GH+ ++ T + E
Sbjct: 266 LRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLY-ILSGHTDRIYSTIYDHER 322
Query: 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134
+ +S + D +R+++L +N L Q HT V L + + +V S
Sbjct: 323 --KRCISASXDTTIRIWDL---------ENGELXYTL-QGHTALVGLL--RLSDKFLV-S 367
Query: 135 ASEDGTLRQHD 145
A+ DG++R D
Sbjct: 368 AAADGSIRGWD 378
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L GH + + ++ + IS S DT I +W + +L ++++ GH+A V +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ-GHTALVGLLRL---- 360
Query: 75 SDELVVSGAGDAEVRLFNLSRFS 97
SD+ +VS A D +R ++ + +S
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYS 383
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 15 LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
++ H VN +S+N ++ +GS D + +W + KL LH+ E+ H +F + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES-HKDEIFQVHWSP 329
Query: 73 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 330 HNETILASSGT-DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 129 PHVVWSASEDGTLR 142
P V+ S SED ++
Sbjct: 389 PWVICSVSEDNIMQ 402
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 15 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSS----RKLL--HSIETGHSANV-- 65
L GHQ +SWNS S L+S SDD + +W ++ K++ +I TGHSA V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
+ E+ L S A D ++ +++ + PS L HT V L+
Sbjct: 235 VAWHLLHES---LFGSVADDQKLMIWDTRS-------NTTSKPSHLVDAHTAEVNCLSFN 284
Query: 126 VGNPHVVWSASEDGTLRQHDFRQ 148
+ ++ + S D T+ D R
Sbjct: 285 PYSEFILATGSADKTVALWDLRN 307
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
+ R ++ L GH+ V + ++ S+++S S+D I VW Y + +++ GH+ +V
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSV 153
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
F + S +L+ S + D ++L++ F H V +++
Sbjct: 154 QDISF--DHSGKLLASCSADMTIKLWDFQGFEC----------IRTMHGHDHNVSSVSIM 201
Query: 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161
H+V SAS D T++ + + G C + H+E
Sbjct: 202 PNGDHIV-SASRDKTIKMWEVQTG-YCVKTFTGHRE 235
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
GD+I S S D +WE QTG +K G V V+ + ++A+ D T+++W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
G +I S +DD +W+ + R +K L E V + H V T +D T+K+W
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L GH V + ++S G ++S +DD + VW Y +++ + ++ ++ F T
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHK 390
Query: 75 SDELVVSGAGDAEVRLF 91
+ VV+G+ D V+++
Sbjct: 391 TAPYVVTGSVDQTVKVW 407
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 12/186 (6%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
+ GH+ V + N G+L+ S S+D + VW ++++ + H V C + P
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAP 286
Query: 73 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI------TPSALYQC--HTRRVKKLAV 124
E+S + G + F G D I T L H V+ +
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346
Query: 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 184
G ++ S ++D TLR D++ C ++H+ LD A + QT
Sbjct: 347 HSGGKFIL-SCADDKTLRVWDYKN-KRCMKTLNAHEHFVTS-LDFHKTAPYVVTGSVDQT 403
Query: 185 LSLKSC 190
+ + C
Sbjct: 404 VKVWEC 409
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 594 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVV 653
G++ K++ G+ G ++ SGS D +W+ TG + L+G + V V H +
Sbjct: 297 TGSETKKS---GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 353
Query: 654 ATSGIDNTIKIW 665
+ D T+++W
Sbjct: 354 LSCADDKTLRVW 365
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 583 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN 642
D ++ GH + DI G +AS S D +W+ Q I+ + G + V+
Sbjct: 141 DFERTLKGHTDSVQDIS----FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196
Query: 643 CVQCHPFDCVVATSGIDNTIKIW 665
V P + ++ D TIK+W
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMW 219
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 75
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 76 DE---LVVSGAGDAEVRLFNLSRF 96
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
+ + E + GH +N ++ + G+L+ S D I +W+ +++K ++++ V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEV 240
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNL 93
F F P + ++ A +++F+L
Sbjct: 241 FSLAFSP---NRYWLAAATATGIKVFSL 265
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
I Q L G Y S S D +W+ TG + +G ++ V V ++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 658 IDNTIKIWT 666
D TIK+WT
Sbjct: 127 RDKTIKVWT 135
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 75
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL--ATLLGHNDWVSQVRVVPNEKA 156
Query: 76 DE---LVVSGAGDAEVRLFNLSRF 96
D+ ++S D V+ +NL++F
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQF 180
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 71
E + GH +N ++ + G+L+ S D I +W+ +++K ++++ VF F
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 240
Query: 72 PETSDELVVSGAGDAEVRLFNL 93
P + ++ A +++F+L
Sbjct: 241 P---NRYWLAAATATGIKVFSL 259
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
I Q L G Y S S D +W+ TG + +G ++ V V ++ +
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 658 IDNTIKIWT 666
D TIK+WT
Sbjct: 121 RDKTIKVWT 129
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
+E L+ + +I+++ G L SG+ D IN++ ++ KLLH++E GH+ + F
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTF 214
Query: 71 VPETSDELVVSGAGDAEVRLFNL 93
P++ +L+V+ + D ++++++
Sbjct: 215 SPDS--QLLVTASDDGYIKIYDV 235
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 66
RL + LEGHQ V ++ + + S S D HI +W + K + SI+ G + +
Sbjct: 68 ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAW 126
Query: 67 CTKFVPETSDELVVSGAGDAEVRLFNL 93
F P++ + + +G +V +F +
Sbjct: 127 TLAFSPDS--QYLATGTHVGKVNIFGV 151
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
LEGH + +++++ LL++ SDD +I ++ L ++ +GH++ V F P+
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDD 260
Query: 75 S 75
+
Sbjct: 261 T 261
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW-T 666
G Y+ASG+ DG I++ TG+L+ L G + + P ++ T+ D IKI+
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Query: 667 PSASVPSIVSGGAA 680
A++ +SG A+
Sbjct: 236 QHANLAGTLSGHAS 249
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 75
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL--ATLLGHNDWVSQVRVVPNEKA 162
Query: 76 DE---LVVSGAGDAEVRLFNLSRF 96
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
+ + E + GH +N ++ + G+L+ S D I +W+ +++K ++++ V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEV 240
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNL 93
F F P + ++ A +++F+L
Sbjct: 241 FSLAFSP---NRYWLAAATATGIKVFSL 265
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
I Q L G Y S S D +W+ TG + +G ++ V V ++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 658 IDNTIKIWT 666
D TIK+WT
Sbjct: 127 RDKTIKVWT 135
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 75
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 76 DE---LVVSGAGDAEVRLFNLSRF 96
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
+ + E + GH +N ++ + G+L+ S D I +W+ +++K ++++ V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEV 240
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNL 93
F F P + ++ A +++F+L
Sbjct: 241 FSLAFSP---NRYWLAAATATGIKVFSL 265
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
I Q L G Y S S D +W+ TG + +G ++ V V ++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 658 IDNTIKIWT 666
D TIK+WT
Sbjct: 127 RDKTIKVWT 135
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 75
GH+ V ++ + K S++ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 76 DE---LVVSGAGDAEVRLFNLSRF 96
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQF 186
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
+ + E + GH +N ++ + G+L+ S D I +W+ +++K ++++ V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEV 240
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNL 93
F F P + ++ A +++F+L
Sbjct: 241 FSLAFSP---NRYWLAAATATGIKVFSL 265
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
I Q L G Y S S D +W+ TG + +G ++ V V ++ +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
Query: 658 IDNTIKIWT 666
D TIK+WT
Sbjct: 127 RDKTIKVWT 135
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 15 LEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP 72
++ H VN +S+N ++ +GS D + +W + KL LH+ E+ H +F + P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES-HKDEIFQVHWSP 329
Query: 73 ETSDELVVSGAGDAEVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128
L SG D + +++LS+ S +D ++ HT ++ +
Sbjct: 330 HNETILASSGT-DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 129 PHVVWSASED 138
P V+ S SED
Sbjct: 389 PWVICSVSED 398
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 15 LEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSS----RKLL--HSIETGHSANV-- 65
L GHQ +SWNS S L+S SDD + +W ++ K++ +I TGHSA V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125
+ E+ L S A D ++ +++ + PS L HT V L+
Sbjct: 235 VAWHLLHES---LFGSVADDQKLXIWDTRS-------NTTSKPSHLVDAHTAEVNCLSFN 284
Query: 126 VGNPHVVWSASEDGTLRQHDFRQ 148
+ ++ + S D T+ D R
Sbjct: 285 PYSEFILATGSADKTVALWDLRN 307
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETS 75
GH+ V ++ + K S +ISGS D I VW+ + L + GH+ V + VP E +
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKA 162
Query: 76 DE---LVVSGAGDAEVRLFNLSRF 96
D+ ++S D V+ +NL++F
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQF 186
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 65
+ + E + GH +N ++ + G+L+ S D I +W+ +++K +++ V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--QDEV 240
Query: 66 FCTKFVPETSDELVVSGAGDAEVRLFNL 93
F F P + ++ A +++F+L
Sbjct: 241 FSLAFSP---NRYWLAAATATGIKVFSL 265
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG 657
I Q L G Y S S D +W+ TG + +G ++ V V + +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS 126
Query: 658 IDNTIKIWT 666
D TIK+WT
Sbjct: 127 RDKTIKVWT 135
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 34 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 94 SRF 96
S +
Sbjct: 258 STY 260
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSG-IDNTIKIWTP 667
Y+ SGSDD +W + ++ G E V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 668 SASVP--SIVSGGAAGPDTAD 686
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 12 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 71 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 131 VVWSASEDGTLR 142
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
Y+ + SDD IW+ QT + L G + V+ HP ++ + D T+KIW S
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
T ++ F+ R ++I GSDD R ++ TG + + + HP V +
Sbjct: 56 TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 656 SGIDNTIKIW 665
D T+K+W
Sbjct: 115 GSDDLTVKLW 124
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 34 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 94 SRF 96
S +
Sbjct: 258 STY 260
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSG-IDNTIKIWTP 667
Y+ SGSDD +W + ++ G E V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 668 SASVP--SIVSGGAAGPDTAD 686
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 12 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 71 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 131 VVWSASEDGTLR 142
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
Y+ + SDD IW+ QT + L G + V+ HP ++ + D T+KIW S
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
T ++ F+ R ++I GSDD R ++ TG + + + HP V +
Sbjct: 56 TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 656 SGIDNTIKIW 665
D T+K+W
Sbjct: 115 GSDDLTVKLW 124
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH 55
EL GH GCV +++ +LL +G D+ I +W+ S+ +LLH
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
++E++ HQG V + + + S S D +WS+ LH + GH+ V C+
Sbjct: 1082 NKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR-GHNGCVRCSA 1140
Query: 70 FVPETSDELVVSGAGDAEVRLFNLS 94
F +++ L+ +G + E+R++N+S
Sbjct: 1141 FSVDST--LLATGDDNGEIRIWNVS 1163
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
E++ H+ V ++++ + + S D + +W+ + +L+H+ + HS V C F
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNS 716
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
+ L+ +G+ D ++L++L++
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQ 738
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
TD + + G IAS D +++ +TG + + E V C D +AT
Sbjct: 621 TDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIAT 680
Query: 656 SGIDNTIKIW 665
+D +KIW
Sbjct: 681 CSVDKKVKIW 690
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 34 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 94 SRF 96
S +
Sbjct: 258 STY 260
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSG-IDNTIKIWTP 667
Y+ SGSDD +W + ++ G E V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 668 SASVP--SIVSGGAAGPDTAD 686
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
Y+ + SDD IW+ QT + L G + V+ HP ++ + D T+KIW S
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 12 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 71 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 131 VVWSASEDGTLR 142
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
T ++ F+ R ++I GSDD R ++ TG + + + HP V +
Sbjct: 56 TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 656 SGIDNTIKIW 665
D T+K+W
Sbjct: 115 GSDDLTVKLW 124
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 34 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93
+I+ SDD I +W Y ++ + ++E GH +NV F P +++SG+ D ++++N
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLP--IIISGSEDGTLKIWNS 257
Query: 94 SRF 96
S +
Sbjct: 258 STY 260
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+ E H + +I+ + ++SGSDD + +W++ + L GH V C F P+
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK 151
Query: 74 TSDELVVSGAGDAEVRLFNLSR 95
SG D V++++L +
Sbjct: 152 DPSTF-ASGCLDRTVKVWSLGQ 172
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSG-IDNTIKIWTP 667
Y+ SGSDD +W + ++ G E V CV +P D SG +D T+K+W+
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 668 SASVP--SIVSGGAAGPDTAD 686
S P ++ +G G + D
Sbjct: 171 GQSTPNFTLTTGQERGVNYVD 191
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 12 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70
E+ EGH+ V +++N K S SG D + VWS ++ TG V +
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 71 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
P +++ + D ++++ D + A + H V P
Sbjct: 193 YPLPDKPYMITASDDLTIKIW----------DYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 131 VVWSASEDGTLR 142
++ S SEDGTL+
Sbjct: 243 II-SGSEDGTLK 253
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669
Y+ + SDD IW+ QT + L G + V+ HP ++ + D T+KIW S
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655
T ++ F+ R ++I GSDD R ++ TG + + + HP V +
Sbjct: 56 TPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 656 SGIDNTIKIW 665
D T+K+W
Sbjct: 115 GSDDLTVKLW 124
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
LEGH V+ ++ ++ISGS+D + +W+ S+ K+ ++ G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
LEGH+ V +++W G+LL + S D + VW + +S V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134
S EL+ S + D V+L+ R +D+ + + L + H V LA + + S
Sbjct: 161 SQELLASASYDDTVKLY-------REEEDDWVCCATL-EGHESTVWSLAFDPSGQRLA-S 211
Query: 135 ASEDGTLR 142
S+D T+R
Sbjct: 212 CSDDRTVR 219
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 18/142 (12%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVW---------------SYSSRKLLHSIET 59
LEGH+ V +++++ G L S SDD + +W S S K + ++
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 119
HS ++ + T + + GD +R+F S ++T + L+Q H++ V
Sbjct: 250 FHSRTIYDIAWCQLTG--ALATACGDDAIRVFQEDPNSDPQQPTFSLT-AHLHQAHSQDV 306
Query: 120 KKLAVEVGNPHVVWSASEDGTL 141
+A P ++ S S+DG +
Sbjct: 307 NCVAWNPKEPGLLASCSDDGEV 328
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPE 73
EGHQ V ++W+ G+ L S S D +W + + ++E GH V + P
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAP- 115
Query: 74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 133
S L+ + + D V ++ + +++ ++ HT+ VK HVVW
Sbjct: 116 -SGNLLATCSRDKSVWVWEVD-------EEDEYECVSVLNSHTQDVK---------HVVW 158
Query: 134 SASED 138
S++
Sbjct: 159 HPSQE 163
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRL--IKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665
G+Y+AS S D IW+K + L G E V V P ++AT D ++ +W
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 45/221 (20%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74
L GHQG V ++S+ + ++ISGS D VW S L+++++ H+A+V+ K V +
Sbjct: 100 LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS--LVYNLQ-AHNASVWDAKVVSFS 154
Query: 75 SDELVVSGAGDAEVRLFN----LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130
++ + + A D ++L+ + FSG H V+ LAV V + H
Sbjct: 155 ENKFLTASA-DKTIKLWQNDKVIKTFSG---------------IHNDVVRHLAV-VDDGH 197
Query: 131 VVWSASEDGTLRQHDFRQGSSCPP--AGSSHQECRNILLD---LRCGAKRSLADPPKQTL 185
+ S S DG ++ D G S C +L + + CG R++ K+
Sbjct: 198 FI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG 256
Query: 186 SLK-----------SCDISSTRPHLLLVGGSDAFARLYDRR 215
SLK S D S ++VG SD R++ +
Sbjct: 257 SLKQVITLPAISIWSVDCXSNGD--IIVGSSDNLVRIFSQE 295
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW---SYSSRKLLHSIETGHSANVFCTKF 70
+L GH G ++ + +N LL+S SDD + +W + +S+ + GHS ++ +
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY----GHSQSIVSASW 297
Query: 71 VPETSDELVVSGAGDAEVRLFNLSR 95
V D+ V+S + D VRL++L +
Sbjct: 298 V---GDDKVISCSMDGSVRLWSLKQ 319
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 69
++++ + H ++A S+ + +++ S D +W S +LL S GH A+V C
Sbjct: 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLD 203
Query: 70 FVPETSDELVVSGAGDAEVRLFNL 93
P + VSG D + ++++
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDM 227
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 66
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 112
Query: 67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 108
+ P S V G D ++NL G R LDDN I
Sbjct: 113 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 109 SA 110
S+
Sbjct: 171 SS 172
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 148 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 205
Query: 73 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 106
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 206 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 243
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 250
Query: 78 LVVSGAGDAEVRLFNL 93
+G+ DA RLF+L
Sbjct: 251 AFATGSDDATCRLFDL 266
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 591 HCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD 650
H N+ I SF + G + +G DD +W+ +L G + V+C+
Sbjct: 277 HDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 651 CVVATSGIDNTIKIW 665
VAT D+ +KIW
Sbjct: 336 MAVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 66
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 108
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 109 SA 110
S+
Sbjct: 160 SS 161
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 73 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 106
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 78 LVVSGAGDAEVRLFNL 93
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 591 HCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD 650
H N+ I SF + G + +G DD +W+ +L G + V+C+
Sbjct: 266 HDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 651 CVVATSGIDNTIKIW 665
VAT D+ +KIW
Sbjct: 325 MAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 66
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 108
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 109 SA 110
S+
Sbjct: 160 SS 161
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 73 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 106
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 78 LVVSGAGDAEVRLFNL 93
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 591 HCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD 650
H N+ I SF + G + +G DD +W+ +L G + V+C+
Sbjct: 266 HDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 651 CVVATSGIDNTIKIW 665
VAT D+ +KIW
Sbjct: 325 MAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 66
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 108
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 109 SA 110
S+
Sbjct: 160 SS 161
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 73 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 106
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 78 LVVSGAGDAEVRLFNL 93
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 591 HCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD 650
H N+ I SF + G + +G DD +W+ +L G + V+C+
Sbjct: 266 HDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 651 CVVATSGIDNTIKIW 665
VAT D+ +KIW
Sbjct: 325 MAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW-SYSSRKLLHSIETGHSANVF 66
++ R L GH + A+ W + LL+S S D + +W SY++ K +H+I S+ V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPL-RSSWVM 101
Query: 67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSG------------------RGLDDNAITP 108
+ P S V G D ++NL G R LDDN I
Sbjct: 102 TCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 109 SA 110
S+
Sbjct: 160 SS 161
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72
REL GH G ++ + ++ S S DT +W + + + H+ +V P
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAP 194
Query: 73 ETSDELVVSGAGDAEVRLFNL------SRFSGRGLDDNAI 106
+T L VSGA DA +L+++ F+G D NAI
Sbjct: 195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H G V ++S L +SG+ D +W + TGH +++ F P +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDV-REGMCRQTFTGHESDINAICFFP--NGN 239
Query: 78 LVVSGAGDAEVRLFNL 93
+G+ DA RLF+L
Sbjct: 240 AFATGSDDATCRLFDL 255
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 591 HCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD 650
H N+ I SF + G + +G DD +W+ +L G + V+C+
Sbjct: 266 HDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 651 CVVATSGIDNTIKIW 665
VAT D+ +KIW
Sbjct: 325 MAVATGSWDSFLKIW 339
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKF 70
R GH V +++++ ++S S D I +W+ + + GH V C +F
Sbjct: 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF 525
Query: 71 VPETSDELVVSGAGDAEVRLFNLS 94
P T +VS + D V+++NLS
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLS 549
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 15 LEGHQGCVNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTK 69
+ H V AI+ +++S S D I +W + + + TGHS F
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH--FVED 435
Query: 70 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129
V + + +SG+ D E+RL++L+ A + + HT+ V +A + N
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLA----------AGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 130 HVVWSASEDGTLR 142
+V SAS D T++
Sbjct: 486 QIV-SASRDRTIK 497
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW----SYSSRKLLHSIETGHSANVFC 67
+R L GH V + +S G +SGS D + +W S+R+ + GH+ +V
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-----GHTKDVLS 477
Query: 68 TKFVPETSDELVVSGAGDAEVRLFN 92
F + +VS + D ++L+N
Sbjct: 478 VAF--SLDNRQIVSASRDRTIKLWN 500
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 67
L GH G V+ ++ + GSL SG D + +W + K L+S+E + C
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 585 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCV 644
++R GH + D+ L G + SGS DG +W+ G + +G V V
Sbjct: 423 QRRLTGHSHFVEDV----VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478
Query: 645 QCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAG 681
+ + ++ D TIK+W +S G G
Sbjct: 479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE 73
+L GH+ + + +N +G LL S S D+ +VW + + L +++ GH+ ++ +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDV--D 83
Query: 74 TSDELVVSGAGDAEVRLFNLS 94
+ V+G+ D ++L+++S
Sbjct: 84 CFTKYCVTGSADYSIKLWDVS 104
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H V+ +S S G+ +SGS D I VW + + +L S H+A V C P D
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPH-KDS 183
Query: 78 LVVSGAGDAEVRLFN 92
+ +S + D + L++
Sbjct: 184 VFLSCSEDNRILLWD 198
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIK-------MLLGDEAVVNCVQCHPF-DCVVATSGIDN 660
+ IASGS+D +WE G L+ L G V V HP V+ ++G DN
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN 154
Query: 661 TIKIWTPSASVPSIVSGGAAGPDT 684
I +W + G PDT
Sbjct: 155 VILVWDVGTGAAVLTLGPDVHPDT 178
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 609 DYIASGSDDGRWFIWEKQTGRLIK-------MLLGDEAVVNCVQCHPF-DCVVATSGIDN 660
+ IASGS+D +WE G L+ L G V V HP V+ ++G DN
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 661 TIKIWTPSASVPSIVSGGAAGPDT 684
I +W + G PDT
Sbjct: 155 VILVWDVGTGAAVLTLGPDVHPDT 178
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H V +S S G+ +SG D + VW S + +L S HS+ V C P D
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACP-GKDT 195
Query: 78 LVVSGAGDAEVRLFNLSR 95
+ +S D + L++ +
Sbjct: 196 IFLSCGEDGRILLWDTRK 213
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 71
L GH V + W G L SG +D +NVW + + + T H V +
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 72 PETSDELVVSGA-GDAEVRLFNL 93
P S+ L G D +R++N+
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNV 319
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 71
L GH V + W G L SG +D +NVW + + + T H V +
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 72 PETSDELVVSGA-GDAEVRLFNL 93
P S+ L G D +R++N+
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNV 308
>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
Vibrio Cholerae
Length = 361
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 582 IDMKQRYVGHCNVG-TDIKQASFLGQRGDYIASGSDDGRWF 621
I +KQ+Y+G N G ++IK SF +GD A ++DGR++
Sbjct: 150 ILVKQQYLGEHNTGNSEIKAISFKLAKGDVSAFLAEDGRFY 190
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV 71
L GH V + W G L SG +D +NVW + + + T H V +
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 72 PETSDELVVSGA-GDAEVRLFNL-SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129
P S+ L G D +R++N+ S +D ++ S L+ H + + N
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265
Query: 130 HVVW 133
V+W
Sbjct: 266 LVIW 269
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 46
E + H G V ++SWN G++L S DD + +W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW--SYSSRKLLHSIETGH 61
E + H G V ++SWN G++L S DD + +W +YS+ S+ T
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVITAQ 350
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 46
E + H G V ++SWN G++L S DD + +W
Sbjct: 299 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG 60
H G V ++W+ G+ + S S D I +W+ ++ K+ +I G
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 2 HSSLVRRLSQERELEGHQGCVNAI------SWNSKGSLLISGSDDTHINVWSYSSRK--- 52
+SSL ++ + LEGH V +I N +LISGS D + +W +
Sbjct: 4 NSSLDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG 63
Query: 53 ---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93
+ H TGH N F + + +S + D +RL++L
Sbjct: 64 YFGIPHKALTGH--NHFVSDLALSQENCFAISSSWDKTLRLWDL 105
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 589 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP 648
GH + +D+ L Q + S S D +W+ +TG K +G ++ V V P
Sbjct: 73 TGHNHFVSDLA----LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 649 FDCVVATSGIDNTIKIW 665
+ + ++G + IK+W
Sbjct: 129 DNRQILSAGAEREIKLW 145
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLG--DEAVVNCVQCHPFD-----CVVATSGIDN 660
G +AS S DG+ IW+++ GR ++ + A VN VQ P + V ++ G +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 661 TIKIWTPSASVPSIVSGGAAGPDTA 685
++ + P I+ A G ++A
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSA 151
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 585 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE----KQTGRLIKMLLGDEAV 640
+Q+ H + D+ A +G IAS S DGR FIW K+L V
Sbjct: 205 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV 264
Query: 641 VNCVQCHPFDCVVATSGIDNTIKIWTPS 668
V V ++A SG DN + +W S
Sbjct: 265 VWHVSWSITANILAVSGGDNKVTLWKES 292
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 77
H G V + W+ GS + + S D +W SS + + + H A V ++ +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ--HDAPVKTIHWIKAPNYS 142
Query: 78 LVVSGAGDAEVRLFN 92
V++G+ D ++ ++
Sbjct: 143 CVMTGSWDKTLKFWD 157
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 26/129 (20%)
Query: 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFV 71
+EGH+ V ++W++ G L + S D + +W + S+ HS +V +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131
P S+ L+ S + D VR++ + DD+ ++C +AV G+
Sbjct: 163 P--SEALLASSSYDDTVRIW-------KDYDDD-------WEC-------VAVLNGHEGT 199
Query: 132 VWSASEDGT 140
VWS+ D T
Sbjct: 200 VWSSDFDKT 208
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 608 GDYIASGSDDGRWFIWEK----QTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIK 663
G Y+A+ S D +IWE + I +L V V HP + ++A+S D+T++
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 664 IW 665
IW
Sbjct: 179 IW 180
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 13/160 (8%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHS 62
V+ S R L GH+ V I+ +G ++S S D I +W + +H+ E H
Sbjct: 165 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD 224
Query: 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH------- 115
FV +S + + ++ G IT ++
Sbjct: 225 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 284
Query: 116 --TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 153
T L V+ N + +++ E+G L Q D R CP
Sbjct: 285 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-PECP 323
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
QR + +V ++I + F G+ + S S D + IW + G + L+G A V +
Sbjct: 128 QREIDQAHV-SEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 185
Query: 646 CHPFDCVVATSGIDNTIKIW 665
V ++ +D TI++W
Sbjct: 186 IIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 13/160 (8%)
Query: 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHS 62
V+ S R L GH+ V I+ +G ++S S D I +W + +H+ E H
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD 227
Query: 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH------- 115
FV +S + + ++ G IT ++
Sbjct: 228 GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287
Query: 116 --TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 153
T L V+ N + +++ E+G L Q D R CP
Sbjct: 288 KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-PECP 326
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645
QR + +V ++I + F G+ + S S D + IW + G + L+G A V +
Sbjct: 131 QREIDQAHV-SEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 188
Query: 646 CHPFDCVVATSGIDNTIKIW 665
V ++ +D TI++W
Sbjct: 189 IIDRGRNVLSASLDGTIRLW 208
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLG--DEAVVNCVQCHPFD-----CVVATSGIDN 660
G +AS S DG+ IW+++ GR ++ + A VN VQ P + V ++ G +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 661 TIKIWTPSASVPSIVSGGAAGPDTAD-----VLEAMESNQRKLSR 700
++ + P I+ A G ++A + E E N K SR
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 173
>pdb|2QSX|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Lysr From Vibrio Parahaemolyticus
pdb|2QSX|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Lysr From Vibrio Parahaemolyticus
Length = 218
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 277 VNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML- 335
+ HA ++ ++ TP+ L L P I+DF Q + +R ++ TG G + +
Sbjct: 4 IQHATASLIQTNTDQELLVVDVTPSFASLWLVPNINDFHQRHPNIRVKILTGDGAVKNIH 63
Query: 336 --VEIARNSLEEGKHPYYGIEACNEVL 360
++ L H Y C E L
Sbjct: 64 GESDLHVRCLPLSTHYEYSQLLCEETL 90
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 618 GRWFIWE-KQTGR---LIKMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIKIW 665
G+ IW+ +Q G I L GD ++CV HP VVAT G D + IW
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests How
Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 197 PHLLLVGG----SDAFARLYDRRMLPPL----TSCQKRMSPPPC-VNYFCPMHLSEHGRS 247
P+++ VG SD + R+ P L T+ R++P P +N C + ++ +
Sbjct: 999 PYIIGVGSPLNLSDINTAISYSRLTPILHIDTTTPPLRVNPVPTPLNQQCAIRITSLDPA 1058
Query: 248 S-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE 306
+ L + H NG EV+ G + + AG A++Y + + ++ FTPTL G+
Sbjct: 1059 AVLSVQH-----NGVEVIGGTPGNVISV-----AGAAALQYILANQEFLLQFTPTLPGIF 1108
Query: 307 L-------QPPIHDFLQTNIRVRGEVATGLGKCRML-VEIARNSLEEGKHPYYGIEAC 356
QPP+ T VA + R L N PYY + C
Sbjct: 1109 DVFLTTLGQPPVPRGSFTITPPPTTVALNMPPPRQLDFTDVGNDARITCDPYYQLAVC 1166
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 393 QMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL 430
+ A+ DC A +D S +AH ++ + ++ Y EA+
Sbjct: 60 EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 97
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLG--DEAVVNCVQCHPFD-----CVVATSGIDN 660
G +AS S DG+ IW+++ GR ++ + A VN VQ P + V ++ G +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 661 TIKIWTPSASVPSIVSGGAAGPDTAD-----VLEAMESNQRKLSR 700
++ + P I+ A G ++A + E E N K SR
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM----------DVNHAGGRAMRYTVGDASK 294
GRS L L H T P + L +Y GE +M +N R MR D
Sbjct: 55 GRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGN 114
Query: 295 IMSFTPTLNG 304
+FT T +G
Sbjct: 115 AKAFTCTYHG 124
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 227
D++ G SL D S+ SC ++ PH SD A L +P + +
Sbjct: 102 DIQLGVNESLYDTSVVISSMVSCIVARVGPH------SD-IANLAKHSSVPVINALCDTF 154
Query: 228 SPPPCVNYFCPMHLSEHGRSSLHLTH 253
P + F +H S +S+ H TH
Sbjct: 155 HPLQAIADFLTIHESFASQSATHGTH 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,046,828
Number of Sequences: 62578
Number of extensions: 833887
Number of successful extensions: 2485
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1811
Number of HSP's gapped (non-prelim): 621
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)