Query 004739
Match_columns 732
No_of_seqs 434 out of 3316
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 12:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1310 WD40 repeat protein [G 100.0 8.8E-58 1.9E-62 443.9 41.3 695 1-732 32-758 (758)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-53 2.3E-58 398.3 25.2 366 12-666 108-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 1.2E-52 2.5E-57 423.2 17.0 481 7-683 92-592 (775)
4 KOG0271 Notchless-like WD40 re 100.0 1.6E-49 3.4E-54 370.5 20.9 364 53-703 107-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-46 5.7E-51 353.9 24.0 215 6-279 162-376 (459)
6 KOG0306 WD40-repeat-containing 100.0 1.1E-48 2.4E-53 394.4 5.3 569 19-718 65-677 (888)
7 KOG0318 WD40 repeat stress pro 100.0 4.2E-44 9.1E-49 347.7 26.6 510 8-668 48-602 (603)
8 KOG0319 WD40-repeat-containing 100.0 3.1E-44 6.8E-49 362.4 21.8 472 9-673 137-624 (775)
9 KOG0306 WD40-repeat-containing 100.0 5E-42 1.1E-46 346.4 26.9 452 10-672 98-668 (888)
10 KOG0286 G-protein beta subunit 100.0 9.5E-41 2.1E-45 301.6 30.7 218 8-280 44-261 (343)
11 KOG0315 G-protein beta subunit 100.0 3.1E-40 6.8E-45 291.4 30.3 188 32-279 11-198 (311)
12 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-41 9.2E-46 318.7 17.7 280 59-703 172-458 (459)
13 KOG0318 WD40 repeat stress pro 100.0 2E-39 4.2E-44 315.3 16.7 553 25-705 24-602 (603)
14 KOG1408 WD40 repeat protein [F 100.0 1E-38 2.2E-43 319.9 19.5 554 9-673 68-718 (1080)
15 KOG0282 mRNA splicing factor [ 100.0 1.5E-38 3.3E-43 306.6 19.0 211 9-279 204-416 (503)
16 KOG0293 WD40 repeat-containing 100.0 1.8E-37 4E-42 292.6 25.3 209 10-279 215-426 (519)
17 KOG0291 WD40-repeat-containing 100.0 3.2E-37 6.9E-42 312.0 28.8 439 8-677 134-621 (893)
18 KOG0295 WD40 repeat-containing 100.0 4.6E-37 1E-41 286.0 23.8 197 4-260 93-289 (406)
19 KOG0265 U5 snRNP-specific prot 100.0 2E-36 4.3E-41 274.9 27.2 208 11-279 39-247 (338)
20 KOG0279 G protein beta subunit 100.0 2E-35 4.4E-40 265.7 29.6 215 7-280 3-224 (315)
21 KOG0296 Angio-associated migra 100.0 2.1E-35 4.7E-40 275.1 29.2 211 11-281 56-266 (399)
22 KOG0291 WD40-repeat-containing 100.0 6.2E-36 1.4E-40 302.7 25.6 485 17-678 53-560 (893)
23 KOG0273 Beta-transducin family 100.0 5.9E-36 1.3E-40 287.5 24.0 207 12-281 172-392 (524)
24 KOG0284 Polyadenylation factor 100.0 2.6E-36 5.6E-41 284.9 19.4 200 18-279 95-295 (464)
25 KOG0316 Conserved WD40 repeat- 100.0 6.1E-35 1.3E-39 255.8 26.6 207 10-279 8-214 (307)
26 KOG0263 Transcription initiati 100.0 2.9E-36 6.2E-41 308.6 20.7 195 13-279 372-566 (707)
27 KOG1063 RNA polymerase II elon 100.0 1.2E-34 2.7E-39 290.9 29.2 563 11-694 46-678 (764)
28 KOG0266 WD40 repeat-containing 100.0 4.6E-34 1E-38 303.0 31.8 210 12-280 151-366 (456)
29 KOG0281 Beta-TrCP (transducin 100.0 1.5E-35 3.3E-40 273.5 17.3 194 18-279 196-389 (499)
30 KOG0285 Pleiotropic regulator 100.0 1.3E-34 2.9E-39 268.5 23.6 213 5-279 137-349 (460)
31 KOG0315 G-protein beta subunit 100.0 3.3E-33 7.2E-38 247.0 29.1 217 7-279 28-246 (311)
32 KOG0645 WD40 repeat protein [G 100.0 9.3E-33 2E-37 247.5 29.4 220 8-279 3-226 (312)
33 KOG0279 G protein beta subunit 100.0 1.2E-33 2.5E-38 254.4 20.9 256 7-335 51-309 (315)
34 cd00200 WD40 WD40 domain, foun 100.0 4.3E-32 9.3E-37 274.6 34.5 207 12-279 2-208 (289)
35 KOG0286 G-protein beta subunit 100.0 7.8E-33 1.7E-37 250.5 25.5 286 55-702 49-342 (343)
36 KOG0313 Microtubule binding pr 100.0 1.8E-32 3.9E-37 256.8 25.4 240 5-279 89-331 (423)
37 PLN00181 protein SPA1-RELATED; 100.0 2.3E-31 5E-36 304.5 37.5 204 15-279 479-691 (793)
38 KOG0295 WD40 repeat-containing 100.0 1.3E-32 2.9E-37 256.3 21.2 186 53-298 100-285 (406)
39 KOG0281 Beta-TrCP (transducin 100.0 6.8E-34 1.5E-38 262.6 10.4 154 61-279 196-349 (499)
40 KOG0273 Beta-transducin family 100.0 4.7E-32 1E-36 260.8 21.6 306 60-680 176-494 (524)
41 KOG0278 Serine/threonine kinas 100.0 3.4E-32 7.3E-37 240.6 18.5 205 12-279 7-214 (334)
42 KOG1446 Histone H3 (Lys4) meth 100.0 3.8E-30 8.3E-35 236.8 32.4 215 6-280 1-219 (311)
43 KOG0263 Transcription initiati 100.0 4.9E-32 1.1E-36 277.7 20.8 210 11-281 443-652 (707)
44 KOG0276 Vesicle coat complex C 100.0 5.7E-31 1.2E-35 261.3 25.0 213 8-279 2-216 (794)
45 KOG0292 Vesicle coat complex C 100.0 1.5E-30 3.2E-35 267.8 25.8 224 15-279 5-237 (1202)
46 KOG1539 WD repeat protein [Gen 100.0 1.3E-29 2.7E-34 260.2 28.7 416 6-675 189-655 (910)
47 KOG0277 Peroxisomal targeting 100.0 4.9E-30 1.1E-34 227.8 22.0 203 21-279 10-222 (311)
48 KOG0275 Conserved WD40 repeat- 100.0 2.6E-30 5.7E-35 236.8 18.6 205 17-279 211-424 (508)
49 KOG0296 Angio-associated migra 100.0 2E-29 4.4E-34 235.3 24.1 168 53-281 56-223 (399)
50 KOG1408 WD40 repeat protein [F 100.0 4.7E-30 1E-34 258.0 20.9 560 22-706 40-714 (1080)
51 KOG1539 WD repeat protein [Gen 100.0 9.6E-30 2.1E-34 261.1 23.5 483 11-674 106-612 (910)
52 KOG0276 Vesicle coat complex C 100.0 4.3E-29 9.2E-34 248.0 27.3 222 8-287 44-266 (794)
53 KOG0640 mRNA cleavage stimulat 100.0 2.3E-29 5.1E-34 229.4 23.0 215 13-281 106-338 (430)
54 KOG1407 WD40 repeat protein [F 100.0 1.1E-28 2.3E-33 220.2 26.3 206 13-279 14-220 (313)
55 KOG0284 Polyadenylation factor 100.0 6.7E-31 1.5E-35 248.4 12.5 247 10-335 129-376 (464)
56 KOG0265 U5 snRNP-specific prot 100.0 4.7E-29 1E-33 227.1 23.3 162 59-279 44-205 (338)
57 KOG0285 Pleiotropic regulator 100.0 1.8E-29 4E-34 234.5 20.5 162 59-280 148-309 (460)
58 KOG1063 RNA polymerase II elon 100.0 5.7E-30 1.2E-34 257.6 17.1 543 24-707 19-650 (764)
59 KOG0268 Sof1-like rRNA process 100.0 7.7E-30 1.7E-34 237.6 16.8 202 11-279 58-260 (433)
60 KOG0266 WD40 repeat-containing 100.0 1.5E-28 3.2E-33 261.0 28.4 164 60-280 157-320 (456)
61 KOG0288 WD40 repeat protein Ti 100.0 9.3E-30 2E-34 241.1 16.5 204 11-279 167-372 (459)
62 KOG1334 WD40 repeat protein [G 100.0 1.7E-29 3.7E-34 244.2 18.0 238 4-276 127-364 (559)
63 KOG0643 Translation initiation 100.0 2E-28 4.2E-33 219.2 22.8 213 14-280 5-222 (327)
64 KOG0283 WD40 repeat-containing 100.0 5.7E-29 1.2E-33 257.7 22.3 214 11-279 258-533 (712)
65 KOG0274 Cdc4 and related F-box 100.0 4.6E-28 1E-32 255.3 29.6 198 14-279 202-401 (537)
66 KOG2106 Uncharacterized conser 100.0 3.6E-28 7.8E-33 235.7 23.7 455 11-667 96-625 (626)
67 KOG0292 Vesicle coat complex C 100.0 2.2E-28 4.7E-33 252.0 21.2 161 59-279 6-166 (1202)
68 PLN00181 protein SPA1-RELATED; 100.0 4.7E-27 1E-31 269.1 33.2 188 40-279 457-649 (793)
69 KOG0772 Uncharacterized conser 100.0 1.6E-27 3.6E-32 231.7 22.3 230 13-281 161-397 (641)
70 cd00200 WD40 WD40 domain, foun 100.0 1.1E-26 2.3E-31 235.0 25.0 163 56-279 4-166 (289)
71 PTZ00421 coronin; Provisional 100.0 1E-25 2.2E-30 237.7 31.8 211 18-279 19-246 (493)
72 KOG0310 Conserved WD40 repeat- 100.0 1.9E-26 4.1E-31 223.8 23.1 201 18-280 25-227 (487)
73 KOG0645 WD40 repeat protein [G 100.0 2.4E-26 5.2E-31 206.5 21.8 257 10-344 51-311 (312)
74 KOG0973 Histone transcription 99.9 2.3E-26 4.9E-31 244.5 25.0 209 15-268 8-239 (942)
75 KOG0293 WD40 repeat-containing 99.9 1.1E-26 2.3E-31 220.1 19.3 165 59-279 221-385 (519)
76 KOG0641 WD40 repeat protein [G 99.9 3.2E-24 6.9E-29 187.3 32.3 220 10-279 24-262 (350)
77 KOG0316 Conserved WD40 repeat- 99.9 3.4E-26 7.3E-31 201.1 20.1 235 8-304 48-284 (307)
78 PTZ00421 coronin; Provisional 99.9 1.7E-25 3.8E-30 236.0 29.0 230 14-301 70-314 (493)
79 KOG0289 mRNA splicing factor [ 99.9 2.3E-25 5E-30 212.6 25.5 201 20-279 220-420 (506)
80 KOG0300 WD40 repeat-containing 99.9 7.7E-26 1.7E-30 207.1 21.0 222 8-280 137-388 (481)
81 KOG0305 Anaphase promoting com 99.9 4E-25 8.8E-30 223.7 28.5 192 25-280 183-378 (484)
82 KOG0647 mRNA export protein (c 99.9 3.8E-25 8.3E-30 201.8 24.9 202 17-280 25-230 (347)
83 KOG0321 WD40 repeat-containing 99.9 2.4E-25 5.1E-30 222.5 24.4 234 18-279 46-302 (720)
84 KOG1036 Mitotic spindle checkp 99.9 1.2E-24 2.7E-29 199.5 27.0 197 18-279 12-208 (323)
85 KOG0301 Phospholipase A2-activ 99.9 8.7E-25 1.9E-29 220.6 27.8 204 8-278 3-208 (745)
86 KOG0313 Microtubule binding pr 99.9 4E-25 8.6E-30 207.7 23.6 182 60-281 103-292 (423)
87 KOG0282 mRNA splicing factor [ 99.9 2.3E-26 5E-31 222.8 15.6 259 3-335 242-501 (503)
88 KOG0277 Peroxisomal targeting 99.9 4.5E-26 9.7E-31 202.7 14.9 215 7-277 92-308 (311)
89 KOG0294 WD40 repeat-containing 99.9 1.3E-24 2.8E-29 199.5 25.0 206 9-279 33-238 (362)
90 PTZ00420 coronin; Provisional 99.9 5.7E-24 1.2E-28 225.1 33.3 192 37-279 50-249 (568)
91 KOG2096 WD40 repeat protein [G 99.9 4.8E-24 1.1E-28 195.7 27.7 223 12-279 79-309 (420)
92 KOG0278 Serine/threonine kinas 99.9 1.1E-26 2.5E-31 205.7 9.9 254 8-348 48-301 (334)
93 KOG2048 WD40 repeat protein [G 99.9 1.3E-24 2.7E-29 219.1 25.7 503 15-667 21-547 (691)
94 KOG0274 Cdc4 and related F-box 99.9 1.3E-24 2.8E-29 229.4 26.2 201 12-280 242-443 (537)
95 KOG1407 WD40 repeat protein [F 99.9 1.2E-24 2.6E-29 194.5 20.5 160 59-277 17-176 (313)
96 KOG0308 Conserved WD40 repeat- 99.9 5.5E-25 1.2E-29 220.3 19.8 227 18-292 20-257 (735)
97 KOG0275 Conserved WD40 repeat- 99.9 3.5E-25 7.6E-30 203.3 16.7 248 14-335 258-505 (508)
98 PTZ00420 coronin; Provisional 99.9 1.1E-23 2.3E-28 223.0 29.0 233 10-301 65-317 (568)
99 KOG0305 Anaphase promoting com 99.9 1.2E-24 2.7E-29 220.2 19.9 244 16-344 214-461 (484)
100 KOG1445 Tumor-specific antigen 99.9 2.1E-24 4.5E-29 214.9 19.8 215 8-279 68-294 (1012)
101 KOG0299 U3 snoRNP-associated p 99.9 3E-23 6.5E-28 200.1 26.5 207 12-280 135-358 (479)
102 KOG0640 mRNA cleavage stimulat 99.9 3E-24 6.5E-29 196.2 16.9 176 59-279 109-292 (430)
103 KOG0310 Conserved WD40 repeat- 99.9 1.5E-24 3.3E-29 210.6 15.6 247 10-335 59-305 (487)
104 KOG1273 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 188.8 24.7 202 22-279 26-227 (405)
105 KOG0264 Nucleosome remodeling 99.9 6.3E-24 1.4E-28 205.0 19.7 265 17-335 122-400 (422)
106 KOG0289 mRNA splicing factor [ 99.9 1.2E-23 2.6E-28 201.0 20.6 253 8-335 250-502 (506)
107 KOG1332 Vesicle coat complex C 99.9 1.9E-23 4.2E-28 185.0 20.1 130 56-217 5-136 (299)
108 KOG0264 Nucleosome remodeling 99.9 1.7E-23 3.7E-28 202.0 21.1 229 9-279 167-405 (422)
109 KOG0294 WD40 repeat-containing 99.9 2.5E-23 5.5E-28 191.1 20.6 155 78-281 3-160 (362)
110 KOG0643 Translation initiation 99.9 1.3E-23 2.9E-28 188.4 17.5 264 8-335 41-313 (327)
111 KOG1446 Histone H3 (Lys4) meth 99.9 5.7E-22 1.2E-26 183.1 28.1 164 53-279 6-171 (311)
112 KOG0283 WD40 repeat-containing 99.9 1.9E-23 4.1E-28 217.0 20.4 224 5-280 355-578 (712)
113 KOG0288 WD40 repeat protein Ti 99.9 2.4E-24 5.2E-29 204.6 12.6 253 5-335 205-457 (459)
114 KOG2106 Uncharacterized conser 99.9 8.8E-23 1.9E-27 198.5 23.1 452 14-674 61-527 (626)
115 KOG0650 WD40 repeat nucleolar 99.9 3.3E-22 7.1E-27 198.5 26.9 217 11-279 392-638 (733)
116 KOG2445 Nuclear pore complex c 99.9 3.3E-22 7E-27 183.2 24.8 192 56-279 7-208 (361)
117 KOG0299 U3 snoRNP-associated p 99.9 3.5E-23 7.6E-28 199.6 18.5 243 16-322 199-441 (479)
118 KOG0308 Conserved WD40 repeat- 99.9 4.3E-23 9.3E-28 206.8 17.6 219 12-281 66-288 (735)
119 KOG0639 Transducin-like enhanc 99.9 1.5E-22 3.2E-27 196.6 19.6 212 7-279 408-623 (705)
120 KOG1332 Vesicle coat complex C 99.9 2.8E-22 6.2E-27 177.6 19.2 221 10-279 47-287 (299)
121 KOG4283 Transcription-coupled 99.9 1.5E-21 3.3E-26 177.5 24.4 222 15-281 39-279 (397)
122 KOG0269 WD40 repeat-containing 99.9 4.8E-23 1E-27 210.6 14.8 222 21-299 89-318 (839)
123 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9E-21 1.9E-25 193.6 31.3 186 31-280 1-189 (300)
124 KOG0646 WD40 repeat protein [G 99.9 4.7E-22 1E-26 192.3 19.2 244 19-300 81-329 (476)
125 KOG0646 WD40 repeat protein [G 99.9 1E-21 2.2E-26 190.0 19.8 196 32-279 51-248 (476)
126 KOG4227 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 182.8 21.4 174 10-218 47-228 (609)
127 KOG0301 Phospholipase A2-activ 99.9 1.8E-21 3.9E-26 196.9 22.2 160 54-276 7-167 (745)
128 KOG0973 Histone transcription 99.9 1.9E-21 4.1E-26 207.3 22.8 237 10-280 60-357 (942)
129 KOG2055 WD40 repeat protein [G 99.9 5.4E-21 1.2E-25 184.5 23.0 202 19-279 213-418 (514)
130 KOG0302 Ribosome Assembly prot 99.9 2.2E-21 4.8E-26 182.4 18.8 216 14-280 146-380 (440)
131 KOG0772 Uncharacterized conser 99.9 8E-22 1.7E-26 192.4 16.3 239 19-305 214-472 (641)
132 KOG0647 mRNA export protein (c 99.9 1.2E-20 2.5E-25 172.7 22.6 162 59-280 24-186 (347)
133 KOG2919 Guanine nucleotide-bin 99.9 1.5E-20 3.3E-25 173.3 23.0 207 22-279 52-282 (406)
134 KOG0641 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 164.5 21.1 213 15-280 85-305 (350)
135 KOG1274 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 192.5 28.7 209 16-279 10-219 (933)
136 KOG0300 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 179.0 15.4 214 6-281 177-431 (481)
137 KOG2445 Nuclear pore complex c 99.9 4.6E-20 9.9E-25 169.2 24.8 258 16-279 10-319 (361)
138 KOG0269 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 200.7 13.3 227 3-285 115-347 (839)
139 KOG4328 WD40 protein [Function 99.9 9.2E-20 2E-24 176.0 25.5 218 9-278 176-399 (498)
140 KOG2096 WD40 repeat protein [G 99.9 1.3E-19 2.9E-24 166.7 23.5 192 43-278 63-258 (420)
141 KOG0267 Microtubule severing p 99.9 6.1E-22 1.3E-26 201.0 8.5 202 8-270 59-260 (825)
142 KOG0267 Microtubule severing p 99.9 9E-22 2E-26 199.7 9.5 233 13-322 22-254 (825)
143 KOG0302 Ribosome Assembly prot 99.9 1.2E-20 2.5E-25 177.6 15.8 231 7-275 199-435 (440)
144 KOG0268 Sof1-like rRNA process 99.9 7.2E-21 1.6E-25 178.1 13.6 248 10-341 100-347 (433)
145 KOG0307 Vesicle coat complex C 99.8 2.3E-20 5E-25 199.9 16.9 208 24-279 11-241 (1049)
146 KOG0322 G-protein beta subunit 99.8 6.7E-20 1.5E-24 164.5 16.6 230 9-279 4-236 (323)
147 KOG0270 WD40 repeat-containing 99.8 8.3E-20 1.8E-24 175.8 16.9 212 15-281 239-452 (463)
148 KOG1274 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 181.2 27.4 161 59-280 10-170 (933)
149 KOG0321 WD40 repeat-containing 99.8 2.5E-19 5.4E-24 179.7 18.7 277 12-347 93-394 (720)
150 KOG1963 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 175.0 31.3 231 7-283 45-380 (792)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7.3E-18 1.6E-22 172.0 30.1 214 8-279 20-238 (300)
152 KOG1036 Mitotic spindle checkp 99.8 1.2E-18 2.5E-23 160.5 20.6 239 17-322 52-290 (323)
153 KOG1009 Chromatin assembly com 99.8 1.2E-18 2.5E-23 166.1 20.7 171 18-218 12-198 (434)
154 KOG2048 WD40 repeat protein [G 99.8 7.4E-19 1.6E-23 177.8 20.2 219 11-282 60-279 (691)
155 KOG1445 Tumor-specific antigen 99.8 2E-18 4.4E-23 172.6 22.2 173 59-283 76-253 (1012)
156 KOG1034 Transcriptional repres 99.8 1.2E-18 2.6E-23 161.4 16.8 170 14-217 33-213 (385)
157 KOG4283 Transcription-coupled 99.8 6.2E-18 1.3E-22 154.2 21.2 180 16-219 98-280 (397)
158 KOG1034 Transcriptional repres 99.8 2.6E-19 5.7E-24 165.7 11.8 282 18-334 88-378 (385)
159 KOG0642 Cell-cycle nuclear pro 99.8 2.7E-18 5.8E-23 170.4 19.6 249 6-281 281-564 (577)
160 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-18 2.7E-23 169.4 16.6 219 24-301 84-304 (673)
161 KOG0639 Transducin-like enhanc 99.8 9.9E-19 2.1E-23 170.3 15.2 222 19-277 465-703 (705)
162 KOG1188 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 154.8 22.3 199 32-281 41-245 (376)
163 KOG0644 Uncharacterized conser 99.8 4.6E-19 1E-23 182.7 12.1 126 4-147 175-300 (1113)
164 KOG0303 Actin-binding protein 99.8 7.3E-18 1.6E-22 159.9 18.2 231 13-301 75-320 (472)
165 KOG0270 WD40 repeat-containing 99.8 5.8E-18 1.3E-22 163.2 16.6 194 30-280 191-406 (463)
166 KOG1007 WD repeat protein TSSC 99.8 2.7E-17 5.7E-22 149.8 19.1 236 8-279 111-362 (370)
167 KOG2055 WD40 repeat protein [G 99.8 7.2E-17 1.6E-21 156.3 21.6 163 61-279 212-375 (514)
168 COG2319 FOG: WD40 repeat [Gene 99.8 2.5E-15 5.5E-20 161.6 36.5 207 14-281 60-274 (466)
169 KOG0290 Conserved WD40 repeat- 99.8 2.9E-17 6.2E-22 149.7 17.1 231 17-300 94-345 (364)
170 KOG0307 Vesicle coat complex C 99.8 7.3E-18 1.6E-22 181.0 14.1 229 19-301 64-307 (1049)
171 KOG1538 Uncharacterized conser 99.7 1.7E-16 3.6E-21 160.0 22.0 176 21-261 14-189 (1081)
172 KOG4328 WD40 protein [Function 99.7 7.2E-17 1.6E-21 156.2 17.4 227 7-283 222-455 (498)
173 KOG0303 Actin-binding protein 99.7 3.6E-17 7.9E-22 155.2 14.4 177 59-286 78-257 (472)
174 KOG0642 Cell-cycle nuclear pro 99.7 8.1E-17 1.8E-21 160.0 17.0 139 59-218 291-429 (577)
175 KOG2919 Guanine nucleotide-bin 99.7 2.6E-16 5.7E-21 145.6 17.8 232 19-302 104-352 (406)
176 KOG1273 WD40 repeat protein [G 99.7 3.7E-16 8.1E-21 144.1 17.9 249 8-301 54-304 (405)
177 KOG0650 WD40 repeat nucleolar 99.7 6.3E-16 1.4E-20 154.3 20.6 185 59-279 397-596 (733)
178 KOG1517 Guanine nucleotide bin 99.7 2.7E-15 5.9E-20 159.2 23.7 215 17-279 1062-1288(1387)
179 KOG1188 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 144.3 16.7 240 8-279 59-347 (376)
180 KOG1240 Protein kinase contain 99.7 8.8E-15 1.9E-19 157.9 27.1 235 5-289 1034-1284(1431)
181 KOG0290 Conserved WD40 repeat- 99.7 1.9E-15 4E-20 138.0 17.8 205 17-269 148-357 (364)
182 KOG1523 Actin-related protein 99.7 7.7E-15 1.7E-19 136.1 21.1 229 15-281 6-239 (361)
183 PRK11028 6-phosphogluconolacto 99.7 7.9E-14 1.7E-18 143.7 30.4 195 34-279 5-206 (330)
184 KOG0644 Uncharacterized conser 99.7 2E-16 4.4E-21 163.4 10.4 119 53-215 182-300 (1113)
185 KOG1538 Uncharacterized conser 99.7 1.9E-15 4.2E-20 152.4 16.4 229 8-279 42-294 (1081)
186 KOG1007 WD repeat protein TSSC 99.7 1.4E-15 2.9E-20 138.8 13.8 184 18-215 169-361 (370)
187 KOG4378 Nuclear protein COP1 [ 99.7 4.4E-15 9.5E-20 145.0 17.8 193 10-260 112-305 (673)
188 KOG1963 WD40 repeat protein [G 99.7 1.7E-14 3.8E-19 151.3 23.0 212 17-267 203-417 (792)
189 KOG0771 Prolactin regulatory e 99.6 2.6E-15 5.6E-20 144.7 15.3 202 23-279 148-355 (398)
190 KOG1587 Cytoplasmic dynein int 99.6 1.8E-14 4E-19 151.3 22.7 265 10-335 234-512 (555)
191 KOG1587 Cytoplasmic dynein int 99.6 1.6E-13 3.5E-18 144.3 29.3 206 41-278 222-428 (555)
192 COG2319 FOG: WD40 repeat [Gene 99.6 2.2E-13 4.8E-18 146.5 30.9 163 59-279 62-230 (466)
193 KOG1524 WD40 repeat-containing 99.6 3.1E-15 6.8E-20 147.4 12.9 196 6-278 91-286 (737)
194 KOG0771 Prolactin regulatory e 99.6 6.5E-14 1.4E-18 135.2 21.2 84 584-672 274-358 (398)
195 KOG1240 Protein kinase contain 99.6 7E-14 1.5E-18 151.1 23.2 193 46-280 1034-1227(1431)
196 KOG4497 Uncharacterized conser 99.6 1.7E-14 3.8E-19 133.9 15.0 227 24-343 13-244 (447)
197 KOG1009 Chromatin assembly com 99.6 3.7E-14 8E-19 135.7 17.4 128 9-149 55-197 (434)
198 PRK01742 tolB translocation pr 99.6 2.4E-13 5.3E-18 144.5 21.8 225 12-301 196-426 (429)
199 KOG0649 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 120.7 17.5 216 20-282 11-239 (325)
200 PRK01742 tolB translocation pr 99.5 4.4E-13 9.6E-18 142.5 20.9 173 40-279 183-362 (429)
201 KOG4227 WD40 repeat protein [G 99.5 1E-12 2.3E-17 124.8 20.4 258 5-279 89-388 (609)
202 KOG1517 Guanine nucleotide bin 99.5 3.9E-13 8.5E-18 143.1 19.0 212 24-280 1170-1383(1387)
203 KOG1310 WD40 repeat protein [G 99.5 9.9E-12 2.1E-16 123.5 27.3 206 9-220 82-308 (758)
204 PRK11028 6-phosphogluconolacto 99.5 5.1E-12 1.1E-16 130.2 26.3 267 9-335 25-300 (330)
205 KOG0649 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 115.5 19.3 180 63-282 11-190 (325)
206 KOG0322 G-protein beta subunit 99.5 2.5E-13 5.4E-18 122.7 13.9 226 7-277 43-322 (323)
207 KOG2110 Uncharacterized conser 99.5 1.4E-11 3.1E-16 116.9 25.4 218 19-279 87-331 (391)
208 KOG2110 Uncharacterized conser 99.5 3.8E-12 8.3E-17 120.8 20.8 195 21-280 48-250 (391)
209 KOG1272 WD40-repeat-containing 99.5 1E-13 2.2E-18 134.8 9.4 200 19-283 129-328 (545)
210 PF02239 Cytochrom_D1: Cytochr 99.5 4.3E-11 9.3E-16 122.8 28.9 198 32-282 6-206 (369)
211 KOG2139 WD40 repeat protein [G 99.5 5.9E-12 1.3E-16 119.0 20.2 251 19-322 98-361 (445)
212 KOG2111 Uncharacterized conser 99.4 1.5E-11 3.2E-16 114.6 20.4 218 22-280 8-258 (346)
213 KOG3881 Uncharacterized conser 99.4 2.1E-11 4.7E-16 116.6 21.0 71 604-674 255-326 (412)
214 KOG3881 Uncharacterized conser 99.4 7.4E-12 1.6E-16 119.7 17.2 223 16-289 102-331 (412)
215 KOG1354 Serine/threonine prote 99.4 3.5E-12 7.6E-17 119.6 13.8 282 18-335 24-355 (433)
216 KOG4497 Uncharacterized conser 99.4 6.4E-11 1.4E-15 110.6 21.9 192 20-279 49-241 (447)
217 KOG1523 Actin-related protein 99.4 8.7E-12 1.9E-16 116.1 16.2 192 9-218 45-239 (361)
218 PRK04922 tolB translocation pr 99.4 3.7E-11 8E-16 128.1 23.6 204 10-279 194-412 (433)
219 PRK03629 tolB translocation pr 99.4 5.5E-11 1.2E-15 126.1 24.3 222 12-300 191-427 (429)
220 KOG2394 WD40 protein DMR-N9 [G 99.4 6.8E-12 1.5E-16 124.5 15.5 180 29-257 183-383 (636)
221 PRK05137 tolB translocation pr 99.4 8.7E-11 1.9E-15 125.4 25.1 206 10-281 192-415 (435)
222 PRK02889 tolB translocation pr 99.4 5.5E-11 1.2E-15 126.3 23.3 227 10-300 186-424 (427)
223 KOG2321 WD40 repeat protein [G 99.4 1.3E-10 2.9E-15 116.4 23.9 221 4-279 37-259 (703)
224 KOG1409 Uncharacterized conser 99.3 4.5E-11 9.7E-16 112.4 17.1 244 7-280 12-272 (404)
225 KOG1524 WD40 repeat-containing 99.3 1.3E-11 2.8E-16 122.3 13.3 175 32-273 76-250 (737)
226 PRK03629 tolB translocation pr 99.3 8E-10 1.7E-14 117.3 26.8 175 41-279 179-364 (429)
227 KOG1272 WD40-repeat-containing 99.3 2.6E-12 5.6E-17 125.2 6.8 191 19-276 170-360 (545)
228 KOG1334 WD40 repeat protein [G 99.3 2.3E-11 5E-16 119.4 13.3 290 1-344 167-466 (559)
229 KOG2394 WD40 protein DMR-N9 [G 99.3 1.2E-10 2.7E-15 115.7 18.2 245 22-300 126-384 (636)
230 KOG2139 WD40 repeat protein [G 99.3 4.8E-10 1E-14 106.3 20.8 227 16-279 193-432 (445)
231 PF02239 Cytochrom_D1: Cytochr 99.3 2.3E-09 4.9E-14 110.2 26.4 174 8-220 25-207 (369)
232 PF08662 eIF2A: Eukaryotic tra 99.3 4.9E-10 1.1E-14 104.3 18.4 151 66-279 9-180 (194)
233 PF08662 eIF2A: Eukaryotic tra 99.2 7.6E-10 1.7E-14 103.0 17.3 148 24-215 10-179 (194)
234 TIGR02800 propeller_TolB tol-p 99.2 3.2E-09 6.9E-14 113.7 23.7 203 10-278 180-397 (417)
235 COG5354 Uncharacterized protei 99.2 4.1E-09 9E-14 104.6 21.7 186 18-266 31-240 (561)
236 PRK05137 tolB translocation pr 99.2 3.7E-09 8.1E-14 112.9 23.6 200 41-322 182-392 (435)
237 PRK00178 tolB translocation pr 99.2 7E-09 1.5E-13 111.1 24.6 204 11-279 190-407 (430)
238 PRK04792 tolB translocation pr 99.2 6.8E-09 1.5E-13 110.6 23.7 202 13-279 211-426 (448)
239 KOG1912 WD40 repeat protein [G 99.1 8.7E-09 1.9E-13 107.1 22.6 239 7-279 43-305 (1062)
240 KOG2111 Uncharacterized conser 99.1 2.9E-08 6.3E-13 93.0 23.8 163 18-218 93-259 (346)
241 KOG0974 WD-repeat protein WDR6 99.1 2.5E-09 5.5E-14 115.1 18.9 195 25-280 93-290 (967)
242 KOG0280 Uncharacterized conser 99.1 4.3E-09 9.3E-14 97.3 17.4 208 18-281 68-287 (339)
243 PRK04922 tolB translocation pr 99.1 3.8E-09 8.3E-14 112.7 19.8 177 41-281 184-371 (433)
244 KOG0280 Uncharacterized conser 99.1 2.4E-09 5.1E-14 99.0 14.7 207 22-279 124-334 (339)
245 PRK02889 tolB translocation pr 99.1 5.3E-09 1.1E-13 111.2 19.5 200 41-322 176-386 (427)
246 KOG1064 RAVE (regulator of V-A 99.1 5.7E-10 1.2E-14 125.6 11.9 195 15-281 2204-2401(2439)
247 KOG2321 WD40 repeat protein [G 99.1 3.4E-09 7.3E-14 106.6 15.2 200 24-279 138-344 (703)
248 PF10282 Lactonase: Lactonase, 99.1 2.9E-07 6.2E-12 95.0 30.3 208 34-279 2-223 (345)
249 PRK01029 tolB translocation pr 99.0 8.4E-08 1.8E-12 101.5 25.4 230 13-301 178-425 (428)
250 COG5170 CDC55 Serine/threonine 99.0 8.5E-09 1.8E-13 95.9 15.4 240 19-285 26-316 (460)
251 KOG1354 Serine/threonine prote 99.0 3.1E-09 6.8E-14 100.2 11.4 241 19-283 84-364 (433)
252 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.3E-14 72.4 5.9 39 628-666 1-39 (39)
253 TIGR02800 propeller_TolB tol-p 99.0 5.6E-08 1.2E-12 104.0 22.6 176 41-280 170-356 (417)
254 KOG2314 Translation initiation 99.0 2.6E-07 5.6E-12 92.9 25.0 112 23-149 214-336 (698)
255 KOG2315 Predicted translation 99.0 1.3E-07 2.8E-12 95.5 22.9 112 21-147 75-202 (566)
256 KOG1912 WD40 repeat protein [G 99.0 2.7E-08 5.8E-13 103.7 18.2 247 18-302 14-284 (1062)
257 KOG0974 WD-repeat protein WDR6 99.0 7.5E-09 1.6E-13 111.6 14.3 151 26-218 140-291 (967)
258 KOG1409 Uncharacterized conser 99.0 1.1E-08 2.4E-13 96.6 13.2 246 5-279 100-395 (404)
259 KOG4547 WD40 repeat-containing 99.0 3.8E-08 8.1E-13 100.0 17.8 64 604-669 152-221 (541)
260 KOG4532 WD40-like repeat conta 98.9 2.9E-07 6.4E-12 84.2 20.4 237 24-322 72-318 (344)
261 KOG4547 WD40 repeat-containing 98.8 1.7E-07 3.7E-12 95.4 17.2 193 29-279 3-221 (541)
262 PRK00178 tolB translocation pr 98.8 7.6E-07 1.6E-11 95.4 23.4 176 42-281 180-366 (430)
263 KOG0309 Conserved WD40 repeat- 98.8 1.1E-08 2.5E-13 105.7 8.7 189 19-217 24-234 (1081)
264 COG2706 3-carboxymuconate cycl 98.8 9.6E-06 2.1E-10 78.3 27.8 200 40-280 15-223 (346)
265 KOG4190 Uncharacterized conser 98.8 1.5E-08 3.2E-13 101.2 8.7 176 12-223 728-914 (1034)
266 TIGR02658 TTQ_MADH_Hv methylam 98.8 2.2E-05 4.8E-10 79.0 31.0 72 604-676 255-338 (352)
267 COG2706 3-carboxymuconate cycl 98.7 1.8E-05 3.8E-10 76.5 27.0 247 17-322 37-306 (346)
268 PF00400 WD40: WD domain, G-be 98.7 2.8E-08 6E-13 65.5 5.8 38 10-47 2-39 (39)
269 KOG4714 Nucleoporin [Nuclear s 98.7 1.1E-07 2.5E-12 86.5 10.9 134 63-213 180-316 (319)
270 PF10282 Lactonase: Lactonase, 98.7 3.9E-06 8.6E-11 86.6 24.1 228 10-279 77-323 (345)
271 PF15492 Nbas_N: Neuroblastoma 98.7 3.2E-06 6.9E-11 79.1 20.6 196 20-225 44-269 (282)
272 PLN02919 haloacid dehalogenase 98.7 4.9E-06 1.1E-10 97.3 26.7 298 23-347 571-891 (1057)
273 PF15492 Nbas_N: Neuroblastoma 98.7 1.3E-05 2.8E-10 75.1 24.0 231 25-281 3-262 (282)
274 KOG2041 WD40 repeat protein [G 98.7 1.2E-06 2.6E-11 90.8 18.6 170 61-279 13-187 (1189)
275 PLN02919 haloacid dehalogenase 98.7 4.2E-06 9E-11 97.9 25.1 245 22-281 626-891 (1057)
276 TIGR03300 assembly_YfgL outer 98.7 1.1E-05 2.5E-10 84.8 25.8 198 30-281 64-262 (377)
277 KOG1064 RAVE (regulator of V-A 98.6 2.5E-07 5.3E-12 105.2 13.1 76 589-678 2333-2408(2439)
278 KOG3914 WD repeat protein WDR4 98.6 9.2E-07 2E-11 86.0 15.4 162 22-225 65-233 (390)
279 PRK04792 tolB translocation pr 98.6 3.8E-06 8.2E-11 89.7 21.8 176 42-281 199-385 (448)
280 KOG3914 WD repeat protein WDR4 98.6 6.2E-08 1.3E-12 93.9 7.2 150 521-677 75-232 (390)
281 COG5354 Uncharacterized protei 98.6 1.1E-05 2.5E-10 80.8 22.2 117 547-673 272-400 (561)
282 KOG4190 Uncharacterized conser 98.6 1.9E-07 4.1E-12 93.6 9.1 181 54-281 728-909 (1034)
283 KOG1832 HIV-1 Vpr-binding prot 98.6 5.9E-08 1.3E-12 102.5 5.3 206 5-281 1087-1294(1516)
284 TIGR02658 TTQ_MADH_Hv methylam 98.6 7.5E-05 1.6E-09 75.2 26.7 235 9-285 37-337 (352)
285 KOG0309 Conserved WD40 repeat- 98.5 3.9E-07 8.5E-12 94.6 10.4 220 13-279 108-340 (1081)
286 PRK04043 tolB translocation pr 98.5 4.5E-05 9.7E-10 80.3 26.1 193 21-279 189-401 (419)
287 KOG2315 Predicted translation 98.5 2.1E-05 4.6E-10 79.9 21.8 196 18-279 164-391 (566)
288 PRK01029 tolB translocation pr 98.5 8.4E-06 1.8E-10 86.4 20.1 164 18-218 229-406 (428)
289 PF04762 IKI3: IKI3 family; I 98.4 0.00064 1.4E-08 78.4 33.7 210 18-281 74-336 (928)
290 COG4946 Uncharacterized protei 98.4 0.00011 2.3E-09 73.3 22.5 120 17-151 357-481 (668)
291 KOG2066 Vacuolar assembly/sort 98.4 8E-06 1.7E-10 86.5 15.0 191 19-278 39-233 (846)
292 COG5170 CDC55 Serine/threonine 98.4 4.1E-06 8.9E-11 78.4 11.2 238 20-279 86-368 (460)
293 KOG2041 WD40 repeat protein [G 98.3 3.8E-06 8.2E-11 87.2 11.3 213 18-279 13-248 (1189)
294 KOG4532 WD40-like repeat conta 98.3 7.5E-05 1.6E-09 68.9 18.3 198 34-279 131-332 (344)
295 KOG2695 WD40 repeat protein [G 98.3 1E-06 2.2E-11 83.7 6.6 147 527-678 231-386 (425)
296 KOG4714 Nucleoporin [Nuclear s 98.3 4.3E-06 9.4E-11 76.5 10.0 74 186-279 181-255 (319)
297 COG4946 Uncharacterized protei 98.3 8.2E-05 1.8E-09 74.0 19.4 173 30-268 331-508 (668)
298 KOG0882 Cyclophilin-related pe 98.3 1.4E-05 3.1E-10 78.8 13.4 249 10-281 44-308 (558)
299 KOG1645 RING-finger-containing 98.3 5.4E-05 1.2E-09 73.9 17.1 87 9-98 183-270 (463)
300 KOG0882 Cyclophilin-related pe 98.2 1.3E-05 2.9E-10 79.0 12.2 224 18-286 8-239 (558)
301 KOG1275 PAB-dependent poly(A) 98.2 3.1E-05 6.6E-10 83.2 15.7 185 30-276 146-340 (1118)
302 KOG2695 WD40 repeat protein [G 98.2 2.9E-06 6.2E-11 80.7 6.5 124 18-152 251-381 (425)
303 KOG2066 Vacuolar assembly/sort 98.1 0.00018 3.8E-09 76.7 18.9 166 14-216 53-234 (846)
304 KOG1275 PAB-dependent poly(A) 98.1 6.9E-05 1.5E-09 80.6 15.6 167 10-216 168-343 (1118)
305 PF04762 IKI3: IKI3 family; I 98.1 0.00015 3.3E-09 83.4 19.6 218 18-279 208-457 (928)
306 PF06977 SdiA-regulated: SdiA- 98.1 0.00044 9.6E-09 66.3 18.6 231 12-275 14-247 (248)
307 PF08450 SGL: SMP-30/Gluconola 98.0 0.0017 3.7E-08 63.6 23.1 189 22-267 42-244 (246)
308 PF08450 SGL: SMP-30/Gluconola 98.0 0.0013 2.7E-08 64.6 21.9 215 24-298 4-232 (246)
309 smart00320 WD40 WD40 repeats. 98.0 2.3E-05 5E-10 50.8 5.7 39 628-666 2-40 (40)
310 PRK04043 tolB translocation pr 97.9 0.0013 2.9E-08 69.2 21.5 196 42-322 170-383 (419)
311 PF11768 DUF3312: Protein of u 97.9 0.0011 2.3E-08 68.9 19.1 127 8-150 195-332 (545)
312 KOG2114 Vacuolar assembly/sort 97.9 0.0013 2.8E-08 70.9 20.1 203 25-279 29-244 (933)
313 PRK11138 outer membrane biogen 97.9 0.012 2.5E-07 62.3 27.8 201 30-281 68-277 (394)
314 KOG2314 Translation initiation 97.8 0.0037 7.9E-08 64.0 21.0 225 19-279 249-526 (698)
315 PF07433 DUF1513: Protein of u 97.8 0.002 4.4E-08 62.7 18.5 173 25-222 56-254 (305)
316 KOG1008 Uncharacterized conser 97.8 1E-05 2.2E-10 83.4 2.2 168 15-216 98-276 (783)
317 TIGR03300 assembly_YfgL outer 97.8 0.006 1.3E-07 64.2 23.1 207 30-283 104-343 (377)
318 PF07433 DUF1513: Protein of u 97.7 0.016 3.6E-07 56.5 23.0 226 22-282 7-251 (305)
319 PF13360 PQQ_2: PQQ-like domai 97.7 0.0039 8.5E-08 60.7 18.8 192 30-281 35-233 (238)
320 KOG1008 Uncharacterized conser 97.7 3.2E-05 7E-10 79.8 3.6 209 19-279 56-276 (783)
321 PF11768 DUF3312: Protein of u 97.6 0.00026 5.7E-09 73.3 9.5 74 17-95 257-330 (545)
322 KOG3621 WD40 repeat-containing 97.6 0.0017 3.8E-08 68.4 15.2 123 18-148 32-155 (726)
323 smart00320 WD40 WD40 repeats. 97.6 0.00017 3.7E-09 46.5 5.0 39 9-47 2-40 (40)
324 KOG1920 IkappaB kinase complex 97.5 0.015 3.2E-07 65.5 22.2 213 19-281 68-325 (1265)
325 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.012 2.6E-07 47.7 13.3 101 22-142 2-109 (111)
326 KOG1645 RING-finger-containing 97.3 0.0027 5.9E-08 62.4 11.4 86 107-218 184-269 (463)
327 COG3204 Uncharacterized protei 97.3 0.087 1.9E-06 50.5 20.4 182 15-217 81-265 (316)
328 PF08596 Lgl_C: Lethal giant l 97.1 0.017 3.6E-07 60.0 16.1 223 7-278 74-335 (395)
329 PF04841 Vps16_N: Vps16, N-ter 97.1 0.28 6E-06 51.8 25.5 65 25-94 34-109 (410)
330 PF13360 PQQ_2: PQQ-like domai 97.1 0.066 1.4E-06 52.1 19.6 191 40-281 2-194 (238)
331 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.045 9.7E-07 44.4 13.9 105 65-210 2-109 (111)
332 KOG2114 Vacuolar assembly/sort 97.0 0.039 8.4E-07 60.0 17.3 170 64-280 27-203 (933)
333 PRK02888 nitrous-oxide reducta 97.0 0.047 1E-06 58.6 17.8 165 27-216 200-405 (635)
334 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.15 3.1E-06 47.7 17.7 61 31-95 63-124 (354)
335 KOG1920 IkappaB kinase complex 96.9 0.13 2.8E-06 58.5 20.6 223 62-335 68-318 (1265)
336 KOG3617 WD40 and TPR repeat-co 96.8 0.024 5.3E-07 61.2 13.4 72 21-95 61-132 (1416)
337 PF08553 VID27: VID27 cytoplas 96.6 0.19 4E-06 56.4 19.3 147 32-215 494-647 (794)
338 PRK11138 outer membrane biogen 96.6 0.15 3.3E-06 53.9 18.4 181 33-277 207-393 (394)
339 PF08553 VID27: VID27 cytoplas 96.5 0.095 2.1E-06 58.6 16.6 197 6-217 511-726 (794)
340 KOG4640 Anaphase-promoting com 96.5 0.014 3.1E-07 61.1 9.5 95 19-126 20-115 (665)
341 PF08596 Lgl_C: Lethal giant l 96.4 0.39 8.4E-06 50.1 19.8 116 21-147 3-173 (395)
342 COG0823 TolB Periplasmic compo 96.4 0.17 3.6E-06 53.3 17.1 124 12-149 185-316 (425)
343 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.08 1.7E-06 54.9 14.4 183 28-218 1-221 (353)
344 COG3391 Uncharacterized conser 96.3 0.91 2E-05 47.5 22.2 203 23-281 77-286 (381)
345 KOG3621 WD40 repeat-containing 96.3 0.036 7.9E-07 58.9 11.0 116 123-279 40-155 (726)
346 KOG4640 Anaphase-promoting com 96.3 0.011 2.5E-07 61.7 7.2 72 604-676 28-100 (665)
347 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0049 1.1E-07 66.6 4.3 93 582-678 1091-1186(1516)
348 PRK02888 nitrous-oxide reducta 96.2 0.35 7.6E-06 52.3 17.8 84 186-279 322-405 (635)
349 PF02897 Peptidase_S9_N: Proly 96.2 0.99 2.2E-05 48.1 22.0 117 21-149 125-262 (414)
350 PF12894 Apc4_WD40: Anaphase-p 96.1 0.019 4E-07 38.8 5.4 35 19-54 11-45 (47)
351 KOG2444 WD40 repeat protein [G 96.1 0.0093 2E-07 54.6 4.9 108 128-279 69-178 (238)
352 PF06977 SdiA-regulated: SdiA- 95.9 0.37 8.1E-06 46.4 15.4 182 59-279 18-202 (248)
353 PF03178 CPSF_A: CPSF A subuni 95.9 0.34 7.4E-06 49.5 16.1 186 41-279 2-203 (321)
354 PF03178 CPSF_A: CPSF A subuni 95.8 0.91 2E-05 46.4 19.0 147 31-216 42-203 (321)
355 PF00930 DPPIV_N: Dipeptidyl p 95.7 1.5 3.3E-05 45.4 20.4 70 19-91 42-128 (353)
356 KOG2079 Vacuolar assembly/sort 95.6 0.14 3.1E-06 57.4 12.5 75 18-95 129-204 (1206)
357 PF04053 Coatomer_WDAD: Coatom 95.6 0.35 7.6E-06 51.1 15.0 144 61-279 31-174 (443)
358 PF04841 Vps16_N: Vps16, N-ter 95.6 2.8 6.2E-05 44.3 21.8 34 185-219 217-250 (410)
359 KOG3617 WD40 and TPR repeat-co 95.6 0.015 3.3E-07 62.6 4.7 76 598-674 62-137 (1416)
360 COG0823 TolB Periplasmic compo 95.5 0.64 1.4E-05 49.0 16.5 169 51-281 182-361 (425)
361 KOG2444 WD40 repeat protein [G 95.4 0.018 3.9E-07 52.7 4.2 69 606-674 112-183 (238)
362 PF10168 Nup88: Nuclear pore c 95.3 0.48 1E-05 53.3 15.6 103 183-288 83-189 (717)
363 PF06433 Me-amine-dh_H: Methyl 95.2 1.4 3.1E-05 44.0 16.8 219 23-288 98-330 (342)
364 PF14583 Pectate_lyase22: Olig 95.2 4.2 9.2E-05 41.5 20.6 116 22-149 83-224 (386)
365 PF12894 Apc4_WD40: Anaphase-p 95.2 0.066 1.4E-06 36.2 5.2 34 638-672 11-44 (47)
366 KOG2395 Protein involved in va 95.0 1.6 3.4E-05 45.5 16.5 126 6-148 363-501 (644)
367 PHA02713 hypothetical protein; 94.9 1.1 2.3E-05 49.6 17.0 23 259-281 512-536 (557)
368 KOG2079 Vacuolar assembly/sort 94.8 0.042 9.1E-07 61.3 5.6 71 598-671 133-206 (1206)
369 KOG4441 Proteins containing BT 94.7 1.9 4.1E-05 47.7 17.9 149 30-218 284-455 (571)
370 KOG2395 Protein involved in va 94.6 0.8 1.7E-05 47.6 13.5 147 30-215 344-500 (644)
371 PF00780 CNH: CNH domain; Int 94.6 5.4 0.00012 39.6 21.5 159 29-219 5-169 (275)
372 COG3490 Uncharacterized protei 94.5 3 6.4E-05 40.0 15.9 61 26-91 120-186 (366)
373 COG3391 Uncharacterized conser 94.5 7.5 0.00016 40.7 22.4 205 21-281 32-242 (381)
374 PRK13616 lipoprotein LpqB; Pro 94.4 0.074 1.6E-06 58.5 6.4 105 550-664 350-472 (591)
375 PF05694 SBP56: 56kDa selenium 94.4 3.3 7.1E-05 42.8 17.2 71 250-322 313-389 (461)
376 COG3490 Uncharacterized protei 94.3 5.3 0.00012 38.4 18.4 225 23-281 71-313 (366)
377 KOG4649 PQQ (pyrrolo-quinoline 94.1 2.8 6E-05 39.6 14.6 103 31-150 23-126 (354)
378 PF05096 Glu_cyclase_2: Glutam 94.0 5.7 0.00012 38.4 17.1 211 10-268 34-250 (264)
379 KOG4441 Proteins containing BT 94.0 3.9 8.4E-05 45.3 18.4 148 30-218 332-502 (571)
380 PRK13616 lipoprotein LpqB; Pro 93.7 5.6 0.00012 44.1 19.1 112 20-143 350-472 (591)
381 cd00216 PQQ_DH Dehydrogenases 93.7 5.3 0.00012 43.5 18.8 64 31-97 61-131 (488)
382 PF04053 Coatomer_WDAD: Coatom 93.1 3.9 8.4E-05 43.5 15.9 147 13-215 26-173 (443)
383 PF14583 Pectate_lyase22: Olig 93.1 0.98 2.1E-05 45.9 10.9 219 26-281 42-275 (386)
384 cd00216 PQQ_DH Dehydrogenases 92.9 14 0.0003 40.3 20.5 51 607-657 405-457 (488)
385 PF12234 Rav1p_C: RAVE protein 92.6 3.8 8.2E-05 45.1 15.2 122 21-146 31-155 (631)
386 KOG4499 Ca2+-binding protein R 92.4 9.3 0.0002 35.7 16.6 131 62-223 108-249 (310)
387 COG3386 Gluconolactonase [Carb 92.4 13 0.00029 37.3 18.7 170 21-223 67-250 (307)
388 PF11635 Med16: Mediator compl 92.3 25 0.00054 40.6 22.4 236 33-273 64-345 (753)
389 PHA03098 kelch-like protein; P 92.2 11 0.00025 41.6 19.3 63 30-96 294-368 (534)
390 PF10168 Nup88: Nuclear pore c 92.2 18 0.0004 41.0 20.5 28 19-47 84-111 (717)
391 PHA02713 hypothetical protein; 92.1 2.4 5.3E-05 46.8 13.7 22 197-218 513-536 (557)
392 PF14870 PSII_BNR: Photosynthe 92.1 14 0.0003 36.9 17.9 160 17-212 142-301 (302)
393 PF07569 Hira: TUP1-like enhan 92.0 0.6 1.3E-05 44.3 7.5 65 604-669 18-96 (219)
394 KOG3630 Nuclear pore complex, 91.9 2.5 5.4E-05 48.3 13.0 201 24-268 46-263 (1405)
395 KOG4460 Nuclear pore complex, 91.4 1.8 3.8E-05 45.1 10.3 99 183-283 102-203 (741)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 91.2 22 0.00047 37.4 24.3 51 20-72 57-118 (415)
397 PF10313 DUF2415: Uncharacteri 91.1 0.79 1.7E-05 30.0 5.0 32 117-148 1-34 (43)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 91.0 2.9 6.3E-05 43.6 11.8 84 9-95 297-399 (415)
399 PF08728 CRT10: CRT10; InterP 90.8 7.4 0.00016 43.3 15.2 160 31-215 49-246 (717)
400 PF10313 DUF2415: Uncharacteri 90.7 1.2 2.5E-05 29.3 5.4 32 20-51 1-35 (43)
401 PHA02790 Kelch-like protein; P 90.5 18 0.00039 39.3 18.1 106 30-149 271-386 (480)
402 KOG1916 Nuclear protein, conta 89.2 0.99 2.2E-05 49.9 6.9 135 59-215 129-265 (1283)
403 COG3386 Gluconolactonase [Carb 88.7 29 0.00062 34.9 19.2 216 26-286 31-250 (307)
404 PF00780 CNH: CNH domain; Int 88.5 27 0.00059 34.5 17.5 160 76-281 7-168 (275)
405 PF15390 DUF4613: Domain of un 88.5 6.5 0.00014 41.9 11.9 122 17-149 54-188 (671)
406 PF10647 Gmad1: Lipoprotein Lp 88.3 3.6 7.7E-05 40.2 9.7 111 551-667 25-143 (253)
407 PF15390 DUF4613: Domain of un 87.8 21 0.00045 38.4 14.9 158 19-216 19-187 (671)
408 PF11635 Med16: Mediator compl 87.3 63 0.0014 37.4 21.3 72 250-322 261-336 (753)
409 TIGR02276 beta_rpt_yvtn 40-res 86.8 2.8 6.1E-05 27.2 5.7 31 606-636 1-32 (42)
410 KOG4499 Ca2+-binding protein R 86.7 15 0.00033 34.4 11.7 125 19-151 108-245 (310)
411 KOG1916 Nuclear protein, conta 86.6 1.7 3.7E-05 48.2 6.7 101 604-705 243-374 (1283)
412 KOG3630 Nuclear pore complex, 86.1 5.2 0.00011 45.9 10.2 118 19-148 100-229 (1405)
413 TIGR02604 Piru_Ver_Nterm putat 85.7 22 0.00049 37.0 14.6 72 63-146 14-98 (367)
414 PF07569 Hira: TUP1-like enhan 85.6 5.4 0.00012 37.9 9.0 65 27-94 18-95 (219)
415 PF10647 Gmad1: Lipoprotein Lp 85.4 38 0.00083 33.0 20.1 154 21-206 25-186 (253)
416 KOG1897 Damage-specific DNA bi 85.1 79 0.0017 36.4 27.4 68 598-670 833-900 (1096)
417 PF12234 Rav1p_C: RAVE protein 84.5 15 0.00032 40.6 12.6 85 183-279 71-157 (631)
418 PF06433 Me-amine-dh_H: Methyl 84.3 2 4.3E-05 43.0 5.5 58 619-677 270-329 (342)
419 PHA03098 kelch-like protein; P 83.9 26 0.00056 38.8 15.0 65 30-97 342-417 (534)
420 KOG2247 WD40 repeat-containing 83.9 0.2 4.4E-06 51.2 -1.4 147 21-209 36-182 (615)
421 PF14727 PHTB1_N: PTHB1 N-term 83.8 62 0.0013 34.1 16.8 164 76-279 37-205 (418)
422 PF11715 Nup160: Nucleoporin N 83.8 2.6 5.7E-05 46.7 7.1 71 606-676 156-256 (547)
423 PF14727 PHTB1_N: PTHB1 N-term 83.1 47 0.001 35.0 15.2 155 31-216 37-205 (418)
424 COG5167 VID27 Protein involved 82.8 40 0.00086 35.5 13.9 126 6-148 497-633 (776)
425 COG3823 Glutamine cyclotransfe 82.6 40 0.00088 31.1 14.0 65 30-96 55-121 (262)
426 PHA02790 Kelch-like protein; P 82.4 36 0.00079 37.0 15.0 64 30-96 318-386 (480)
427 PF02897 Peptidase_S9_N: Proly 82.2 4.3 9.2E-05 43.3 7.7 67 604-672 131-214 (414)
428 PF05694 SBP56: 56kDa selenium 82.1 34 0.00073 35.7 13.2 131 22-152 183-347 (461)
429 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.3 91 0.002 34.3 22.4 63 31-97 69-141 (527)
430 TIGR03118 PEPCTERM_chp_1 conse 80.7 62 0.0013 32.0 22.0 229 22-284 25-285 (336)
431 TIGR02604 Piru_Ver_Nterm putat 80.0 45 0.00098 34.7 14.2 109 20-136 14-142 (367)
432 KOG1900 Nuclear pore complex, 79.6 37 0.00081 40.2 13.9 172 31-216 91-273 (1311)
433 COG3204 Uncharacterized protei 78.3 72 0.0016 31.3 18.9 179 59-279 82-264 (316)
434 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.3 88 0.0019 34.4 16.2 31 607-637 471-501 (527)
435 PF08728 CRT10: CRT10; InterP 77.4 42 0.00091 37.7 13.1 118 20-146 101-245 (717)
436 PF14761 HPS3_N: Hermansky-Pud 77.3 43 0.00093 31.3 11.2 111 32-149 29-165 (215)
437 PF10214 Rrn6: RNA polymerase 77.2 1.5E+02 0.0033 34.5 21.5 151 114-282 77-236 (765)
438 PF07676 PD40: WD40-like Beta 76.0 13 0.00027 23.7 5.6 32 15-46 4-38 (39)
439 KOG2377 Uncharacterized conser 75.7 18 0.0004 37.3 9.0 98 18-128 65-165 (657)
440 PF14761 HPS3_N: Hermansky-Pud 75.6 45 0.00097 31.1 10.8 126 77-217 29-165 (215)
441 TIGR03074 PQQ_membr_DH membran 75.5 1.6E+02 0.0035 34.0 23.3 67 31-97 194-281 (764)
442 KOG1983 Tomosyn and related SN 75.1 50 0.0011 39.3 13.9 31 20-50 36-66 (993)
443 TIGR02276 beta_rpt_yvtn 40-res 74.9 15 0.00033 23.6 5.9 30 29-58 1-31 (42)
444 PRK13684 Ycf48-like protein; P 74.6 1.1E+02 0.0023 31.4 17.5 157 19-214 172-330 (334)
445 TIGR03074 PQQ_membr_DH membran 74.4 1.3E+02 0.0027 34.9 16.4 46 607-655 690-742 (764)
446 COG4257 Vgb Streptogramin lyas 74.3 88 0.0019 30.4 16.4 193 20-279 62-263 (353)
447 PF07676 PD40: WD40-like Beta 73.9 13 0.00028 23.7 5.2 33 633-665 3-38 (39)
448 smart00564 PQQ beta-propeller 73.2 7.6 0.00016 23.5 3.9 26 609-634 7-32 (33)
449 KOG1897 Damage-specific DNA bi 72.9 1.9E+02 0.0041 33.6 17.8 179 42-279 751-943 (1096)
450 KOG2280 Vacuolar assembly/sort 72.6 1.7E+02 0.0036 32.9 18.2 50 41-95 64-113 (829)
451 PF12657 TFIIIC_delta: Transcr 72.0 35 0.00075 31.0 9.5 30 250-279 87-122 (173)
452 PRK10115 protease 2; Provision 70.9 2E+02 0.0043 33.0 26.1 73 20-96 127-209 (686)
453 COG4590 ABC-type uncharacteriz 70.6 21 0.00045 36.9 8.0 173 10-219 211-390 (733)
454 PF14781 BBS2_N: Ciliary BBSom 70.3 69 0.0015 27.4 12.7 111 24-149 3-127 (136)
455 PF08801 Nucleoporin_N: Nup133 69.7 63 0.0014 34.4 12.4 31 185-216 190-220 (422)
456 PF12768 Rax2: Cortical protei 69.0 62 0.0013 32.0 11.0 99 41-150 16-126 (281)
457 PF13449 Phytase-like: Esteras 67.2 1.5E+02 0.0033 30.2 15.9 136 116-269 19-167 (326)
458 KOG2247 WD40 repeat-containing 66.3 2.1 4.6E-05 44.2 0.3 145 64-270 36-180 (615)
459 PF12657 TFIIIC_delta: Transcr 65.8 38 0.00083 30.7 8.4 31 640-670 87-123 (173)
460 PF07995 GSDH: Glucose / Sorbo 65.2 41 0.00088 34.5 9.4 56 607-662 270-329 (331)
461 KOG1900 Nuclear pore complex, 64.1 2.7E+02 0.0059 33.6 16.0 36 246-281 240-275 (1311)
462 KOG4460 Nuclear pore complex, 63.5 2.1E+02 0.0046 30.6 14.2 99 116-220 103-203 (741)
463 COG5276 Uncharacterized conser 63.5 1.6E+02 0.0034 29.1 22.2 201 20-281 87-288 (370)
464 PF11715 Nup160: Nucleoporin N 62.2 15 0.00033 40.7 6.1 38 20-57 215-256 (547)
465 COG5167 VID27 Protein involved 61.7 2.3E+02 0.0049 30.3 13.6 148 29-216 477-633 (776)
466 PF05096 Glu_cyclase_2: Glutam 61.2 1.7E+02 0.0036 28.6 17.3 171 52-281 34-206 (264)
467 KOG2377 Uncharacterized conser 61.0 2E+02 0.0044 30.1 12.8 99 40-149 42-142 (657)
468 PF01011 PQQ: PQQ enzyme repea 61.0 24 0.00052 22.4 4.4 26 611-636 3-28 (38)
469 COG5276 Uncharacterized conser 60.9 1.8E+02 0.0038 28.8 20.7 208 14-284 36-247 (370)
470 PF12768 Rax2: Cortical protei 59.4 18 0.00038 35.8 5.3 57 616-672 14-76 (281)
471 PF10395 Utp8: Utp8 family; I 57.6 3.1E+02 0.0067 30.8 14.5 121 19-150 129-262 (670)
472 PLN02153 epithiospecifier prot 55.5 2.5E+02 0.0054 28.8 17.7 25 30-54 85-114 (341)
473 PLN02193 nitrile-specifier pro 54.8 3.1E+02 0.0067 29.7 16.7 22 197-218 329-354 (470)
474 TIGR03606 non_repeat_PQQ dehyd 53.7 3.1E+02 0.0067 29.4 21.0 59 15-73 25-89 (454)
475 KOG1896 mRNA cleavage and poly 53.3 4.8E+02 0.01 31.4 16.5 30 250-279 1183-1214(1366)
476 PF14870 PSII_BNR: Photosynthe 53.1 2.5E+02 0.0055 28.2 21.0 160 59-275 141-301 (302)
477 PF10214 Rrn6: RNA polymerase 53.0 4.3E+02 0.0093 30.8 23.1 188 60-279 77-277 (765)
478 PRK10115 protease 2; Provision 51.7 3.7E+02 0.0081 30.8 14.9 33 117-150 127-164 (686)
479 PLN02193 nitrile-specifier pro 51.2 3.5E+02 0.0076 29.3 16.9 64 30-96 228-304 (470)
480 KOG3522 Predicted guanine nucl 49.9 1.4E+02 0.003 33.9 10.4 150 33-219 549-701 (925)
481 PF08801 Nucleoporin_N: Nup133 49.5 3.3E+02 0.0071 29.0 13.5 30 250-279 191-220 (422)
482 PF12341 DUF3639: Protein of u 48.9 50 0.0011 19.3 3.8 25 186-213 3-27 (27)
483 PF01436 NHL: NHL repeat; Int 47.8 54 0.0012 19.1 4.1 25 251-275 4-28 (28)
484 PLN00033 photosystem II stabil 47.1 3.7E+02 0.008 28.3 18.4 154 22-212 241-396 (398)
485 PF03088 Str_synth: Strictosid 45.6 69 0.0015 25.2 5.5 51 614-665 33-85 (89)
486 TIGR03548 mutarot_permut cycli 45.5 3.4E+02 0.0074 27.5 15.2 65 30-97 72-150 (323)
487 PF02333 Phytase: Phytase; In 44.7 3.9E+02 0.0084 27.9 22.2 209 30-280 67-292 (381)
488 PF01731 Arylesterase: Arylest 43.2 47 0.001 26.0 4.2 29 251-279 56-85 (86)
489 PF14781 BBS2_N: Ciliary BBSom 43.2 2.2E+02 0.0047 24.5 12.6 79 66-150 2-84 (136)
490 PF03088 Str_synth: Strictosid 41.6 1.7E+02 0.0038 23.0 7.7 39 40-82 36-74 (89)
491 smart00036 CNH Domain found in 40.4 4E+02 0.0086 26.8 13.7 62 30-96 12-75 (302)
492 KOG2109 WD40 repeat protein [G 39.0 23 0.00049 38.5 2.5 76 8-87 304-391 (788)
493 KOG0553 TPR repeat-containing 38.1 3.8E+02 0.0082 26.6 10.2 102 333-444 82-183 (304)
494 PLN00033 photosystem II stabil 36.3 5.4E+02 0.012 27.1 13.7 111 19-144 280-396 (398)
495 PF14269 Arylsulfotran_2: Aryl 35.7 1.3E+02 0.0028 30.2 7.2 65 604-668 151-220 (299)
496 PF13570 PQQ_3: PQQ-like domai 35.4 59 0.0013 20.7 3.3 21 607-627 20-40 (40)
497 PF14269 Arylsulfotran_2: Aryl 35.0 1.4E+02 0.003 30.0 7.3 73 21-94 145-220 (299)
498 PF01731 Arylesterase: Arylest 34.5 1.4E+02 0.0031 23.3 5.7 32 117-148 54-85 (86)
499 PF07995 GSDH: Glucose / Sorbo 34.5 1.1E+02 0.0024 31.3 6.7 50 22-73 4-59 (331)
500 PF10433 MMS1_N: Mono-function 33.9 6.6E+02 0.014 27.5 13.6 106 28-145 219-340 (504)
No 1
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.8e-58 Score=443.88 Aligned_cols=695 Identities=37% Similarity=0.522 Sum_probs=504.4
Q ss_pred CchhhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004739 1 MHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV 80 (732)
Q Consensus 1 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~ 80 (732)
+++.|++++.+.++|+||++.|+|+.|+.||.+|++|+.|-.+.|||.-..+.++.+..+|...|++++|.|..++.+++
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 36789999999999999999999999999999999999999999999999999999989999999999999988778999
Q ss_pred EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
||+.|..|+++|+...++...+....++.+.+.+|...|..|+..|++++.|.++++||+|+.+|++.+..+......+.
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999999876666666666778889999999999999999999999999999999999999776543332222
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCcccccCCCCC----Ccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPP----PCVNY 235 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~----~~~~~ 235 (732)
.+.... .......++..+|...++|++|+.|...++||.+ ..++...-......| .|+++
T Consensus 192 ~l~ny~---------------~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y 256 (758)
T KOG1310|consen 192 ILVNYN---------------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY 256 (758)
T ss_pred HHHHhc---------------hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe
Confidence 222111 1224778999999999999999999999999954 334443333333333 48999
Q ss_pred cccccc-ccCCCccc---cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCC-------CCceee-----ec
Q 004739 236 FCPMHL-SEHGRSSL---HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD-------ASKIMS-----FT 299 (732)
Q Consensus 236 ~~~~~~-~~~~~~~~---~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~~-----~~ 299 (732)
|.|.++ .+.+.... -++-++|+|+|..|++.-..-.|++||+...+.+...+..-+ .+..+. ++
T Consensus 257 f~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~s 336 (758)
T KOG1310|consen 257 FSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPIEDSNKKPSKPSLLFTQPLKRS 336 (758)
T ss_pred ecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecCcccccccCCCCcchhhccccccc
Confidence 999998 33331111 257789999999898888888999999999776655443311 000111 11
Q ss_pred ---cCCCC---ccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccch
Q 004739 300 ---PTLNG---LELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH 373 (732)
Q Consensus 300 ---~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 373 (732)
+..+. ...+...++-+|. ++.......+.....|.+++|....+.+.....+..-+..........
T Consensus 337 N~lh~~en~~~~~tP~sr~hrsp~--------~a~~~~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~ 408 (758)
T KOG1310|consen 337 NYLHWYENNFGASTPASRVHRSPY--------TAAQPRFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI 408 (758)
T ss_pred cccccccCCccccCCccccccCcc--------cccccchhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh
Confidence 11110 1111222222222 566667888889999999998877776666555555554444333334
Q ss_pred hhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004739 374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 453 (732)
Q Consensus 374 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 453 (732)
.++.+.+.....|.|+++.+++++||+.++.+++..++++|++.+++..+++..++..+.-..+.-+|........|..+
T Consensus 409 ~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l 488 (758)
T KOG1310|consen 409 YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL 488 (758)
T ss_pred HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence 58889999999999999999999999999999999999999999999999999999999988888888654444455555
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccc
Q 004739 454 KKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVE 533 (732)
Q Consensus 454 ~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 533 (732)
++.+-.+...+.-..-. ...++......+.+....-..+-+.......+...+++.+|+.+...+.+..+...
T Consensus 489 ~rDi~aa~~~~~~e~~~-------~~~ri~t~~~~~~r~~~~~~~~~~~~~l~s~d~~~e~e~p~d~qts~vds~~R~dd 561 (758)
T KOG1310|consen 489 PRDISAALFSNPSEMIR-------AFARIDTDLSSVRRFFWIHKVLRGCLLLISSDIYWEQEQPWDSQTSDVDSSQRLDD 561 (758)
T ss_pred ccchHHHhccCchhhhh-------hhheeccchhhhhhhhhhhhhhhhhhhhhcccccccccCCCCCCceeccccccccc
Confidence 55555543322211111 11122222333333333222222223333455566777777777776666555444
Q ss_pred cccccCCcceeeccCCCCccccccCCCCCCCCC-----CCCCCCCCccccccccccceeEeeeccccceeeecccccCCC
Q 004739 534 ANFLHGSLNVRIHRRGDSARETVDANGSSGSPS-----SSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG 608 (732)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg 608 (732)
-..+.+.+...+....+. -+..|..+++ ++..+|...|.++........|.||.+..+.|+.+.|+...|
T Consensus 562 ~n~~~~~l~~~v~~~~~~-----~~~~~~~~~~~~~~~ssl~nDe~dyq~E~sydy~~rYvGHCNv~TDIKeanFlGqrg 636 (758)
T KOG1310|consen 562 ENGFLTLLEPPVNYENEV-----ESSSGENIVSMYTGHSSLNNDEDDYQDEESYDYASRYVGHCNVTTDIKEANFLGQRG 636 (758)
T ss_pred cccccccccCcccccccc-----ccccccccccccccccccccchhhcccchhhhHHhhhccccccccccccccccccCC
Confidence 444444444444332221 1122222222 112445555777777888899999999999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCchhHH
Q 004739 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 688 (732)
Q Consensus 609 ~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~~~~~ 688 (732)
.|+++||.||...||+..+|+.++.+.|.+..|+|++-+|....|||.|.|.+||||.+..-.++....-| +|-+....
T Consensus 637 eyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDstiKIwsp~a~p~~~as~~h-~pns~~iv 715 (758)
T KOG1310|consen 637 EYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTIKIWSPEATPPSGASRNH-RPNSYAIV 715 (758)
T ss_pred CeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccceEEecccCCCCccccccc-CCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999885555443323 22233344
Q ss_pred HHHHHHHHHhhhccccccchhhhhhccccccccCCcCCccccCC
Q 004739 689 EAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 732 (732)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (732)
...+.|++...|....+...+....+|++ |.++--+++.|+++
T Consensus 716 ~~~e~n~Q~~sR~~~~~l~~~~~~~fr~~-~~~g~~h~~~~t~~ 758 (758)
T KOG1310|consen 716 ATNEMNRQQGSRDSYITLRMLSHLAFRAH-LDDGFGHEVLDTDA 758 (758)
T ss_pred hhhhhhhhhhccCCcchHHHHHHHHHHHh-hcccCCcccccCCC
Confidence 55566666666666666666666677777 77777788999874
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-53 Score=398.34 Aligned_cols=366 Identities=19% Similarity=0.265 Sum_probs=293.1
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
-..+.||.++|.|++|+|+|..||||+.|.++|+||+.+.....+. ++|...|.|++|+|+ |+.|++|+.||.|++|
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIRLW 184 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEEEe
Confidence 3457899999999999999999999999999999999999999999 899999999999999 6999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|.++++. ....+.+|...|++++|.|- ..++|++++.||.|+|||+..+.
T Consensus 185 dpktg~~---------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~----------------- 238 (480)
T KOG0271|consen 185 DPKTGQQ---------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT----------------- 238 (480)
T ss_pred cCCCCCc---------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-----------------
Confidence 9997543 25789999999999999872 34689999999999999998765
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.+....+|..+|+|+.|-.+ .+|++|+.|++|++|+...+.....+ .||.
T Consensus 239 --------~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~l--------------------kGHa 288 (480)
T KOG0271|consen 239 --------CVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCREL--------------------KGHA 288 (480)
T ss_pred --------EEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhh--------------------cccc
Confidence 23445678889999999876 39999999999999999987655444 6776
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccccc
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 327 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 327 (732)
. +|+.++.+-+-- |=+|..| ... .. ++ +.
T Consensus 289 h-wvN~lalsTdy~-LRtgaf~-------~t~-~~----------~~-----~~-------------------------- 317 (480)
T KOG0271|consen 289 H-WVNHLALSTDYV-LRTGAFD-------HTG-RK----------PK-----SF-------------------------- 317 (480)
T ss_pred h-heeeeeccchhh-hhccccc-------ccc-cc----------CC-----Ch--------------------------
Confidence 6 699999876532 3333322 111 00 00 00
Q ss_pred CcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCC
Q 004739 328 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS 407 (732)
Q Consensus 328 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 407 (732)
+.... .+.+.+...+
T Consensus 318 se~~~------------------~Al~rY~~~~----------------------------------------------- 332 (480)
T KOG0271|consen 318 SEEQK------------------KALERYEAVL----------------------------------------------- 332 (480)
T ss_pred HHHHH------------------HHHHHHHHhh-----------------------------------------------
Confidence 00000 0000000000
Q ss_pred ccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccc
Q 004739 408 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSD 487 (732)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~ 487 (732)
++. +
T Consensus 333 ---------------------------------~~~----------~--------------------------------- 336 (480)
T KOG0271|consen 333 ---------------------------------KDS----------G--------------------------------- 336 (480)
T ss_pred ---------------------------------ccC----------c---------------------------------
Confidence 000 1
Q ss_pred cccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc--cCCcceeeccCCCCccccccCCCCCCCC
Q 004739 488 IIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL--HGSLNVRIHRRGDSARETVDANGSSGSP 565 (732)
Q Consensus 488 ~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 565 (732)
+.+++|+.|.++.+|+- ..+.+.++.+|...|..+.||||++++|
T Consensus 337 ---------------------------------erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 337 ---------------------------------ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ---------------------------------ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 33444555555555542 2345678899999999999999999999
Q ss_pred CCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEe
Q 004739 566 SSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQ 645 (732)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~ 645 (732)
+++=++..++|+-.+ ++.+.+|.||-..|+.|. +|.|.++|+|||.|.++++||+++.++..-|.||.++|.+|.
T Consensus 384 SaSFDkSVkLW~g~t-Gk~lasfRGHv~~VYqva----wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRT-GKFLASFRGHVAAVYQVA----WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD 458 (480)
T ss_pred EeecccceeeeeCCC-cchhhhhhhccceeEEEE----eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence 997777777798877 899999999999998888 899999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEecCCCcEEEEc
Q 004739 646 CHPFDCVVATSGIDNTIKIWT 666 (732)
Q Consensus 646 fsp~~~~l~S~s~D~~i~vW~ 666 (732)
|+|||..++|||.|..+|+|.
T Consensus 459 wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceeecCCCceEEEeec
Confidence 999999999999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=423.22 Aligned_cols=481 Identities=17% Similarity=0.157 Sum_probs=370.9
Q ss_pred hhccccEeeec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 7 RRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 7 ~~~~~~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.+.++++.++. |++||..++|+|.|.+|++|+.|+.|+|||+..+.+.+.| .+|.+.|.++.|+|+.+-..|++|..|
T Consensus 92 ~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 92 PTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred ccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCC
Confidence 45688888988 9999999999999999999999999999999999999999 899999999999998644568999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+++++||+.... .++..+..|...|++++|.+++ ..+++++.|..+.+||+.+.+...
T Consensus 171 ~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~------------ 228 (775)
T KOG0319|consen 171 GTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLK------------ 228 (775)
T ss_pred ceEEEEEcccCc---------hHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhh------------
Confidence 999999998532 2478999999999999999964 888899999999999996654220
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCC--C--CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISST--R--PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
..+ -...+.++.+-++ + +.+++|+|.+|.+++||..+.+........
T Consensus 229 -------------~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~--------------- 279 (775)
T KOG0319|consen 229 -------------TLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS--------------- 279 (775)
T ss_pred -------------eec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccC---------------
Confidence 000 1113444545443 1 348999999999999999988654432110
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccc
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRV 321 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 321 (732)
. ...+..+...+....+++.+.|..+.+||..+.+....+.+..+.+..++|. -|+..++
T Consensus 280 --~---~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l---------------G~e~~~l 339 (775)
T KOG0319|consen 280 --D---SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL---------------GPEESHL 339 (775)
T ss_pred --C---chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec---------------CCccceE
Confidence 0 1126666666666678888899999999998866555555444444444432 2455677
Q ss_pred ccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-CCc--cchhhhhhHHHHhhccccccchhhhHHh
Q 004739 322 RGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-GPM--LRHECLCIRAALLLKRKWKNDAQMAIRD 398 (732)
Q Consensus 322 ~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 398 (732)
+ .+++...+++ .+..+.. ..++.||...| |-+ ....++++++.|+++++|..+.
T Consensus 340 a---VATNs~~lr~-----y~~~~~~---------c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~------ 396 (775)
T KOG0319|consen 340 A---VATNSPELRL-----YTLPTSY---------CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN------ 396 (775)
T ss_pred E---EEeCCCceEE-----EecCCCc---------eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC------
Confidence 7 7777777777 3332222 34777777755 222 1113677777777777776420
Q ss_pred HHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 004739 399 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPR 478 (732)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~ 478 (732)
.
T Consensus 397 -------------------------------------------------------------------------------~ 397 (775)
T KOG0319|consen 397 -------------------------------------------------------------------------------N 397 (775)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCC------cc----eeec
Q 004739 479 TGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS------LN----VRIH 546 (732)
Q Consensus 479 ~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~------~~----~~~~ 546 (732)
.++...+....+|... .++++-.+ ..++++++.|.++|+|.+..+ .. ....
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~-----------------asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLG-----------------ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred cchhhhhhhhcccccccceeeecccC-----------------ccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 1111111122222222 23333333 278999999999999999551 11 2457
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcC
Q 004739 547 RRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ 626 (732)
Q Consensus 547 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~ 626 (732)
.|++.|++|+.+|+.+++|+++.|+..++|+.+. ..+..+|.||+..++++. |+|..+.|||+|.|+|||||.+.
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~----Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVS----FSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccC-ceEEEEeeCCccceEEEE----eccccceeEeccCCceEEEEEec
Confidence 8999999999999999999999999999999996 889999999999988888 89999999999999999999999
Q ss_pred cccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC
Q 004739 627 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD 683 (732)
Q Consensus 627 tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~ 683 (732)
++.|+++|.||+..|..+.|-.+|+.|+|++.||.||||++++.++..++.+|...+
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence 999999999999999999999999999999999999999999999999999997776
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-49 Score=370.46 Aligned_cols=364 Identities=20% Similarity=0.222 Sum_probs=284.0
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
|...+ .+|.++|.|+.|+|+ |..|++|+.|.++++||+.+. .|.++.++|...|.+++|+||+ ..|
T Consensus 107 CssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsPDg-k~i 172 (480)
T KOG0271|consen 107 CSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSPDG-KKI 172 (480)
T ss_pred ecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECCCc-chh
Confidence 44445 699999999999998 599999999999999999974 4589999999999999999955 999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC----CCCEEEEEeCCCe
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----RPHLLLVGGSDAF 208 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~~l~tg~~dg~ 208 (732)
|+|+.||.|++||..++++... ..++|...|++++|.|- ..++|++++.||.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~ 228 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS 228 (480)
T ss_pred hccccCCeEEEecCCCCCcccc------------------------cccCcccceeEEeecccccCCCccceecccCCCC
Confidence 9999999999999999986533 34567779999999763 2568999999999
Q ss_pred EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeee
Q 004739 209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 288 (732)
Q Consensus 209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 288 (732)
|+|||+..+..+..+ .||.. +|+|+.|--+| +|++|+.|++|++|+...+.....+.
T Consensus 229 vrIWd~~~~~~~~~l--------------------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lk- 285 (480)
T KOG0271|consen 229 VRIWDTKLGTCVRTL--------------------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELK- 285 (480)
T ss_pred EEEEEccCceEEEEe--------------------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhc-
Confidence 999999877544333 77877 69999997666 79999999999999999976554444
Q ss_pred cCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCC
Q 004739 289 VGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG 368 (732)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 368 (732)
+|...++.++.+.| .-+.+|. | .
T Consensus 286 ---------------GHahwvN~lalsTd-----------------------y~LRtga-f------------------~ 308 (480)
T KOG0271|consen 286 ---------------GHAHWVNHLALSTD-----------------------YVLRTGA-F------------------D 308 (480)
T ss_pred ---------------ccchheeeeeccch-----------------------hhhhccc-c------------------c
Confidence 44444444443333 1111111 0 0
Q ss_pred CccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHH
Q 004739 369 PMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 448 (732)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 448 (732)
|.++. ..| .+ ..
T Consensus 309 ~t~~~-----------------------------------------------------------------~~~-~s--e~ 320 (480)
T KOG0271|consen 309 HTGRK-----------------------------------------------------------------PKS-FS--EE 320 (480)
T ss_pred ccccc-----------------------------------------------------------------CCC-hH--HH
Confidence 00000 000 00 00
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCC
Q 004739 449 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE 528 (732)
Q Consensus 449 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~ 528 (732)
+-....++
T Consensus 321 ~~~Al~rY------------------------------------------------------------------------ 328 (480)
T KOG0271|consen 321 QKKALERY------------------------------------------------------------------------ 328 (480)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 00000000
Q ss_pred CcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC
Q 004739 529 GRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG 608 (732)
Q Consensus 529 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg 608 (732)
..+.-..+.+|++++.+.+..+|++....+++.++.||+..+..+. ||||+
T Consensus 329 -------------------------~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSPd~ 379 (480)
T KOG0271|consen 329 -------------------------EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSPDG 379 (480)
T ss_pred -------------------------HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECCCc
Confidence 1112233478999988888888999887889999999999965554 59999
Q ss_pred CEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc----
Q 004739 609 DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT---- 684 (732)
Q Consensus 609 ~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~---- 684 (732)
+|+||+|-|.+||+||..+|+.+.+|+||-+.|+.|+||.|.++|+|||.|.|+|||++++.+....+.||...|.
T Consensus 380 r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 380 RYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW 459 (480)
T ss_pred cEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998884
Q ss_pred -hhHHHHHHHHHHHhhhccc
Q 004739 685 -ADVLEAMESNQRKLSRNRE 703 (732)
Q Consensus 685 -~~~~~~~~~~~~~~~~~~~ 703 (732)
+|...++..-.++..|+|.
T Consensus 460 spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceeecCCCceEEEeec
Confidence 6778888888888887774
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-46 Score=353.91 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=190.0
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
++.+.+...--|-+.+|..+.|++|++.||||+.+|.++||+..+...+.+| .+|...|.++.|+|..++..++||+.|
T Consensus 162 ~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 162 LQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred hhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccC
Confidence 3344444444577899999999999999999999999999999999999999 899999999999998435799999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
|++++|++.+. .++..+.+|...|..++|+|+ +++|+|++.|.+-++||++++..
T Consensus 241 gtvklw~~~~e----------~~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~E-------------- 295 (459)
T KOG0272|consen 241 GTVKLWKLSQE----------TPLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSE-------------- 295 (459)
T ss_pred CceeeeccCCC----------cchhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccchh--------------
Confidence 99999999863 458999999999999999995 59999999999999999999873
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
+....+|...|.+++|.|+ |.++++|+.|..-||||+++++.+..+ .|
T Consensus 296 -----------lL~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtgr~im~L--------------------~g 343 (459)
T KOG0272|consen 296 -----------LLLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTGRCIMFL--------------------AG 343 (459)
T ss_pred -----------hHhhcccccccceeEecCC-CceeeccCccchhheeecccCcEEEEe--------------------cc
Confidence 3344678889999999999 889999999999999999999655443 67
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|.. +|.+|+|+|+|..|++|+.|++++|||++.
T Consensus 344 H~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 344 HIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred ccc-ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 776 699999999999999999999999999987
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=394.45 Aligned_cols=569 Identities=16% Similarity=0.133 Sum_probs=403.5
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
...|+|+.-+++.-+||.|..||.|+||+..++....++ .+|+.+|+++.|+.. |..|+||+.|+.|.+||+-...+
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tf-ngHK~AVt~l~fd~~--G~rlaSGskDt~IIvwDlV~E~G 141 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITF-NGHKAAVTTLKFDKI--GTRLASGSKDTDIIVWDLVGEEG 141 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeee-cccccceEEEEEccc--CceEeecCCCccEEEEEecccee
Confidence 358999999999999999999999999999999888888 899999999999998 69999999999999999985433
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
+..+.||++.|+..-|.. +.+++++.+.|+.|++||+.+.. .+.
T Consensus 142 ----------l~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqh-------------------------Cf~ 185 (888)
T KOG0306|consen 142 ----------LFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQH-------------------------CFE 185 (888)
T ss_pred ----------eEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEecccce-------------------------eee
Confidence 688999999999999987 55899999999999999998876 233
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
++..|...++++++.+ +.+++++.|+.+++|++.....-.. .++.+......... ....+ ....++..+
T Consensus 186 Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~------~~~~~s~~~~G~~~-rqsk~-R~i~l~~d~ 254 (888)
T KOG0306|consen 186 THVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKE------TNRYISTKLRGTFI-RQSKG-REINLVTDF 254 (888)
T ss_pred EEecccceEEEEEEec---ceEEEEecCCceEEEEeeccccccc------ccccceeeccceee-eccCC-ceeEEeecC
Confidence 4456778999999986 4899999999999999932211000 00001110011111 11112 245677788
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCcceeeec-----------CCCCceee--ecc-----CCCCccCCCCCCccCCCccc
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-----------GDASKIMS--FTP-----TLNGLELQPPIHDFLQTNIR 320 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~g~~ 320 (732)
++++|++-+.|..+.+|.+.+.......... .+....+. ..- ..-...+.+.++.+.|.+..
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 9999999999999999999885432221111 00000000 000 00011223334444444333
Q ss_pred cccccccCcchhhHHHHHHHhhhhc-CCCchhhhhHhHHHHhcccCCC-----CCccchhhhhhHHHHhhccccccchhh
Q 004739 321 VRGEVATGLGKCRMLVEIARNSLEE-GKHPYYGIEACNEVLEGHLSGI-----GPMLRHECLCIRAALLLKRKWKNDAQM 394 (732)
Q Consensus 321 ~~~~~~~~~d~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~w~~~~~~ 394 (732)
.. .+..-.++++.+ ..++. +..-.......+-.+.||..+| |.+.. +++++ ....+.+|+.+...
T Consensus 335 ~~-~lv~l~nNtv~~-----ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~--~~~Sg-a~~SikiWn~~t~k 405 (888)
T KOG0306|consen 335 EN-TLVLLANNTVEW-----YSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI--LLASG-AGESIKIWNRDTLK 405 (888)
T ss_pred ce-eEEEeecCceEE-----EEeccCCCCCccccccceeeeccchhheeEEEeecCce--eeeec-CCCcEEEEEccCcc
Confidence 21 111122233332 22332 1111122223344566666655 33332 23332 34567888866222
Q ss_pred hHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 004739 395 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGAR 474 (732)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 474 (732)
.++.. ...+ +....|.|. .+++..+...+.+.+++.
T Consensus 406 ciRTi------~~~y------------------------~l~~~Fvpg-----------d~~Iv~G~k~Gel~vfdl--- 441 (888)
T KOG0306|consen 406 CIRTI------TCGY------------------------ILASKFVPG-----------DRYIVLGTKNGELQVFDL--- 441 (888)
T ss_pred eeEEe------cccc------------------------EEEEEecCC-----------CceEEEeccCCceEEEEe---
Confidence 22111 0000 233455564 344555554444444441
Q ss_pred CCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc------cCCcce---
Q 004739 475 SEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL------HGSLNV--- 543 (732)
Q Consensus 475 ~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~------~~~~~~--- 543 (732)
.++.+ +.+..+|.+. +++.+||+ +.+++|+-|.+++.|++ .|....
T Consensus 442 ---aS~~l--~Eti~AHdgaIWsi~~~pD~------------------~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 442 ---ASASL--VETIRAHDGAIWSISLSPDN------------------KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred ---ehhhh--hhhhhccccceeeeeecCCC------------------CceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 11111 2345566666 89999999 99999999999999997 233322
Q ss_pred ----eeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCc
Q 004739 544 ----RIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR 619 (732)
Q Consensus 544 ----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~ 619 (732)
+...-.+.|.|+.+||||++||.+--+++..||..++ ++..-.++||.-+|.|+. +|||++.++|||.|.+
T Consensus 499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smD----IS~DSklivTgSADKn 573 (888)
T KOG0306|consen 499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMD----ISPDSKLIVTGSADKN 573 (888)
T ss_pred eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEe----ccCCcCeEEeccCCCc
Confidence 3445567899999999999999999999999999888 899999999999999888 8999999999999999
Q ss_pred EEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC-----chhHHHHHHHH
Q 004739 620 WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-----TADVLEAMESN 694 (732)
Q Consensus 620 i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~-----~~~~~~~~~~~ 694 (732)
|+||-+.-|.|.+.|.+|.+.|++|.|.|....+.|+|.|+.||-||-...+.++.+.||...+ .++...+++.+
T Consensus 574 VKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred eEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999996655 56778889999
Q ss_pred HHHhhhccccccchhhhhhccccc
Q 004739 695 QRKLSRNREHSLSYELLERFHMHE 718 (732)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~ 718 (732)
+|+..|.|..+.+..+++..+..|
T Consensus 654 hD~sIRlwE~tde~~~lEeekE~E 677 (888)
T KOG0306|consen 654 HDKSIRLWERTDEILILEEEKEGE 677 (888)
T ss_pred CCceeEeeeccCcceeeehhhhhh
Confidence 999999999999888777766653
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-44 Score=347.71 Aligned_cols=510 Identities=13% Similarity=0.124 Sum_probs=359.6
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD- 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d- 85 (732)
.+.....+.+|..+++...|+|.|.|+|+|...|+|||||.... ..++.-.+.-.++|..++|++++ ++|+..++-
T Consensus 48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds--~RI~avGEGr 125 (603)
T KOG0318|consen 48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDS--KRIAAVGEGR 125 (603)
T ss_pred CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCC--cEEEEEecCc
Confidence 33455678899999999999999999999999999999998763 33333226778999999999995 777776642
Q ss_pred ---CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 86 ---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 86 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
|.+.+||..+. +-.+.+|...|+++.|-|.-+-.++||++|+.|.+|+=...+
T Consensus 126 erfg~~F~~DSG~S------------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK------------ 181 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNS------------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK------------ 181 (603)
T ss_pred cceeEEEEecCCCc------------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee------------
Confidence 45777877643 677899999999999999888899999999999999743222
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
.-.....|..-|.++.|+|| |.++++.+.||+|.+||=.+++.+..+..
T Consensus 182 -------------Fk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~----------------- 230 (603)
T KOG0318|consen 182 -------------FKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELED----------------- 230 (603)
T ss_pred -------------eeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecC-----------------
Confidence 12233456678999999999 89999999999999999999887665532
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecC--------------CCCc-----eee-e----
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG--------------DASK-----IMS-F---- 298 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--------------~~~~-----~~~-~---- 298 (732)
..+|.+ .|.+++|+||++.+++++.|.+++|||+.+.+......... ..+. .+. +
T Consensus 231 ~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 231 SDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence 146766 59999999999999999999999999999865333221111 1000 111 1
Q ss_pred ---ccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccc--h
Q 004739 299 ---TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR--H 373 (732)
Q Consensus 299 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~ 373 (732)
.....+|.-.+.++..++|++++. +++.|+.+.- |+...|.... ..-.+|...+..-.. .
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~---SgsyDG~I~~-----W~~~~g~~~~-------~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIY---SGSYDGHINS-----WDSGSGTSDR-------LAGKGHTNQIKGMAASES 374 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEE---eeccCceEEE-----EecCCccccc-------cccccccceEEEEeecCC
Confidence 124568888999999999999999 9999999998 9998777321 111334333210000 0
Q ss_pred hhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004739 374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 453 (732)
Q Consensus 374 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 453 (732)
.-+.+.+.|.+++.-+..... ..... +..+...|.
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~----~t~~~------------------------------~~~lg~QP~----------- 409 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNG----YTKSE------------------------------VVKLGSQPK----------- 409 (603)
T ss_pred CcEEEEecCCeEEEEecccCc----ccccc------------------------------eeecCCCce-----------
Confidence 123333444444333211000 00000 001111221
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCccccc------ccccccccc-CCCCCCCCCCCCCCCCChhhhhhhcccCCCCC
Q 004739 454 KKHIAAAETEKNNKANDGGARSEPRTGRVLSL------SDIIYRSEA-NSDASQDGPRSEREDSDYDEEVEVDFHTSVPG 526 (732)
Q Consensus 454 ~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~-~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~ 526 (732)
-++....+.+..+-. ...+..+ .+.....+. .++.+|++ ...+.|
T Consensus 410 --~lav~~d~~~avv~~--------~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~------------------~~vaVG 461 (603)
T KOG0318|consen 410 --GLAVLSDGGTAVVAC--------ISDIVLLQDQTKVSSIPIGYESSAVAVSPDG------------------SEVAVG 461 (603)
T ss_pred --eEEEcCCCCEEEEEe--------cCcEEEEecCCcceeeccccccceEEEcCCC------------------CEEEEe
Confidence 111111111111100 0000101 111111122 68889999 899999
Q ss_pred CCCcccccccccCCc---ceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeeccc
Q 004739 527 DEGRDVEANFLHGSL---NVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASF 603 (732)
Q Consensus 527 ~~d~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f 603 (732)
.+|+.++++.++|.. ...+..|...|++++||||+++||.+...+...+|+..........+.-|+.++.++.
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a---- 537 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA---- 537 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE----
Confidence 999999999998732 3467889999999999999999999966666666999886554555566999977777
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcc-cEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCC
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTG-RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 668 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg-~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~ 668 (732)
|||++++|||||-|..|.||+++.. +-+....+|...|+.|.|- |...|+|+|.|..||+|++.
T Consensus 538 WsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 538 WSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred eCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 7999999999999999999999853 4567777899999999997 45679999999999999874
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=362.42 Aligned_cols=472 Identities=15% Similarity=0.180 Sum_probs=358.3
Q ss_pred ccccEeeeccCCceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 9 LSQERELEGHQGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~--~lasg~~dg~i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
....+.|+||.+.|.++.|+|+-. .|++|..|+++++||+.+... +..+ ..|...|++++|+++ +..+++++.|
T Consensus 137 ~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~-~~H~S~vtsL~~~~d--~~~~ls~~RD 213 (775)
T KOG0319|consen 137 GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM-ILHKSAVTSLAFSED--SLELLSVGRD 213 (775)
T ss_pred CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH-HhhhhheeeeeeccC--CceEEEeccC
Confidence 346788999999999999999654 689999999999999996654 6666 799999999999999 4899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC--C--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--N--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
..+.|||+...+. ...+. -...+.++.+-++ + +.++.|+|.+|.+++||..+++.......
T Consensus 214 kvi~vwd~~~~~~----------l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~---- 278 (775)
T KOG0319|consen 214 KVIIVWDLVQYKK----------LKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQ---- 278 (775)
T ss_pred cEEEEeehhhhhh----------hheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhcc----
Confidence 9999999964321 23332 2345666666653 1 35899999999999999988874311110
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
+... .+..+...+. ...++..+.|..+.++|.++.+..+.+
T Consensus 279 ------------------~~~~--e~~~~~~~~~-~~~~l~vtaeQnl~l~d~~~l~i~k~i------------------ 319 (775)
T KOG0319|consen 279 ------------------SDSE--EIDHLLAIES-MSQLLLVTAEQNLFLYDEDELTIVKQI------------------ 319 (775)
T ss_pred ------------------CCch--hhhcceeccc-cCceEEEEccceEEEEEccccEEehhh------------------
Confidence 0011 2444444444 345666677899999999988765544
Q ss_pred ccCCCccccEEEEEEc-CCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccc
Q 004739 242 SEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR 320 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (732)
.|.++ .|..+.|- |+.++|++++..+.+++|++.+.... .+.+|...+.++....+|..
T Consensus 320 --vG~nd-EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-----------------ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 320 --VGYND-EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-----------------IIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred --cCCch-hheeeeecCCccceEEEEeCCCceEEEecCCCceE-----------------EEeCchhheeeeeecccCcE
Confidence 44444 48888875 67789999999999999988874322 45677777777777778888
Q ss_pred cccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC----ccchhhhhhHHHHhhccccccchhhhH
Q 004739 321 VRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP----MLRHECLCIRAALLLKRKWKNDAQMAI 396 (732)
Q Consensus 321 ~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~ 396 (732)
++ +++.|+++++ |.++++.. ...+.....+|...|.. -+.+..|++++.|.++++|...
T Consensus 380 la---t~sKD~svil-----Wr~~~~~~----~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~----- 442 (775)
T KOG0319|consen 380 LA---TGSKDKSVIL-----WRLNNNCS----KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP----- 442 (775)
T ss_pred EE---EecCCceEEE-----EEecCCcc----hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC-----
Confidence 99 9999999999 98854432 22345566677766522 1222345666666666666533
Q ss_pred HhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 004739 397 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSE 476 (732)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~ 476 (732)
+..+
T Consensus 443 ----------------------------------------------------------------------------~s~~ 446 (775)
T KOG0319|consen 443 ----------------------------------------------------------------------------KSKE 446 (775)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 1000
Q ss_pred CCCCccc-ccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCccccccccc-CCcceeeccCCCCc
Q 004739 477 PRTGRVL-SLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH-GSLNVRIHRRGDSA 552 (732)
Q Consensus 477 ~~~g~~~-~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~-~~~~~~~~~~~~~v 552 (732)
...--++ .-.+...|... +++.+|+. +++++|++|++.|+|+++ ..+..++.+|...|
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~nd------------------kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAPND------------------KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV 508 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecCCC------------------ceEEecccccceeeecccCceEEEEeeCCccce
Confidence 0000000 00112233333 67777777 999999999999999996 56778999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEE
Q 004739 553 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIK 632 (732)
Q Consensus 553 ~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~ 632 (732)
++|.|+|.++.+|++++|.+.+||...+ +.++++|.||+.. |-.+.| -.+|+.|+|++.||.||||++.+++|++
T Consensus 509 w~V~Fs~~dq~laT~SgD~TvKIW~is~-fSClkT~eGH~~a---Vlra~F-~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 509 WCVSFSKNDQLLATCSGDKTVKIWSIST-FSCLKTFEGHTSA---VLRASF-IRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred EEEEeccccceeEeccCCceEEEEEecc-ceeeeeecCccce---eEeeee-eeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999999999999999999999998 9999999999998 556666 6689999999999999999999999999
Q ss_pred EEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004739 633 MLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPS 673 (732)
Q Consensus 633 ~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~ 673 (732)
+|.+|++.|++++-+|.+..++|||.||.|.+|.-.+.+..
T Consensus 584 tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 584 TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQ 624 (775)
T ss_pred hhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHH
Confidence 99999999999999999999999999999999987776654
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-42 Score=346.44 Aligned_cols=452 Identities=16% Similarity=0.211 Sum_probs=349.1
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
...-++.||+..|+++.|...|..||+||.|+.|.|||+-...-+.++ .+|...|+..-|... .+.+++++.|+.|+
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~--~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG--DSFLVSVSKDSMIK 174 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC--CeEEEEeccCceEE
Confidence 556778999999999999999999999999999999999988888888 899999999999985 38999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC------------------
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS------------------ 151 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~------------------ 151 (732)
+||+.+. .|..+...|...+.++++.+ +.+++++.|+.+++|++....-
T Consensus 175 ~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r 241 (888)
T KOG0306|consen 175 FWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR 241 (888)
T ss_pred EEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence 9999973 45788889999999999986 6888999999999999921100
Q ss_pred ------CC-----------------------------------C-------CCC--------------------------
Q 004739 152 ------CP-----------------------------------P-------AGS-------------------------- 157 (732)
Q Consensus 152 ------~~-----------------------------------~-------~~~-------------------------- 157 (732)
.. + ...
T Consensus 242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ 321 (888)
T KOG0306|consen 242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA 321 (888)
T ss_pred ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence 00 0 000
Q ss_pred --------CCcccceEEeeccCCcc-----------------ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 158 --------SHQECRNILLDLRCGAK-----------------RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 158 --------~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
........++-+.++.. ..-....+|...|.+++++.+ ...+++ +..+.+++|
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~S-ga~~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLAS-GAGESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeee-cCCCcEEEE
Confidence 00000000110111100 000223578889999999987 444444 456789999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA 292 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 292 (732)
+..+.+.+.++. .+ .+.+..|.|.++++++|...|.+.+||+.+.....
T Consensus 400 n~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-------- 448 (888)
T KOG0306|consen 400 NRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE-------- 448 (888)
T ss_pred EccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh--------
Confidence 999886555441 11 48889999999999999999999999999854322
Q ss_pred CceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccc
Q 004739 293 SKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR 372 (732)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 372 (732)
..+.|+..+-.++.+||++..+ +++.|+++++ |+++--..
T Consensus 449 --------ti~AHdgaIWsi~~~pD~~g~v---T~saDktVkf-----Wdf~l~~~------------------------ 488 (888)
T KOG0306|consen 449 --------TIRAHDGAIWSISLSPDNKGFV---TGSADKTVKF-----WDFKLVVS------------------------ 488 (888)
T ss_pred --------hhhccccceeeeeecCCCCceE---EecCCcEEEE-----EeEEEEec------------------------
Confidence 3446677777778888888777 7777777777 66551100
Q ss_pred hhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHH
Q 004739 373 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 452 (732)
Q Consensus 373 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (732)
.|..
T Consensus 489 -------------------------------------------------------------------~~gt--------- 492 (888)
T KOG0306|consen 489 -------------------------------------------------------------------VPGT--------- 492 (888)
T ss_pred -------------------------------------------------------------------cCcc---------
Confidence 0000
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc-CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcc
Q 004739 453 IKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA-NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRD 531 (732)
Q Consensus 453 ~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~ 531 (732)
.+.+.+-...+ ++....+. ++.+|||| ++++.+--|.+
T Consensus 493 -~~k~lsl~~~r----------------------tLel~ddvL~v~~Spdg------------------k~LaVsLLdnT 531 (888)
T KOG0306|consen 493 -QKKVLSLKHTR----------------------TLELEDDVLCVSVSPDG------------------KLLAVSLLDNT 531 (888)
T ss_pred -cceeeeeccce----------------------EEeccccEEEEEEcCCC------------------cEEEEEeccCe
Confidence 00000000001 11111122 57789999 99999999999
Q ss_pred cccccccC-CcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCE
Q 004739 532 VEANFLHG-SLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDY 610 (732)
Q Consensus 532 ~~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~ 610 (732)
++++-++. ++..++++|.-+|.|+..|||++++++++.|...++|..+. +++.+.|-+|.+.+.++. |-|+.++
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~----F~P~~~~ 606 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQ----FLPKTHL 606 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc-chhhhhhhcccCceeEEE----Eccccee
Confidence 99999975 78889999999999999999999999999999999999998 899999999999966665 5899999
Q ss_pred EEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004739 611 IASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP 672 (732)
Q Consensus 611 lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~ 672 (732)
++|++.|+.|+-||.+..++++.|.||...|+|++.+|+|.+++|+|.|.+||+|.-.....
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence 99999999999999999999999999999999999999999999999999999999766443
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.5e-41 Score=301.61 Aligned_cols=218 Identities=23% Similarity=0.357 Sum_probs=189.8
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.++..++|+||...|+++.|++|.++|++++.||.+.|||..+...++.+ .-....|..++|+|. |++++.|+-|+.
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~ 120 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNK 120 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCce
Confidence 35567899999999999999999999999999999999999998888888 567889999999999 599999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
..||++.+.+.... ....+.+.+|.+.+.++.|.+ + ..|+|++.|.++.+||+++++.
T Consensus 121 Csiy~ls~~d~~g~----~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~---------------- 178 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGN----VRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQ---------------- 178 (343)
T ss_pred eEEEeccccccccc----ceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceE----------------
Confidence 99999986532211 133567899999999999987 4 5677999999999999999873
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.....+|.+.|.+++++|.+++.+++|+.|+..++||++.+ .|.++| .||.
T Consensus 179 ---------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-------------~c~qtF-------~ghe 229 (343)
T KOG0286|consen 179 ---------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-------------QCVQTF-------EGHE 229 (343)
T ss_pred ---------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-------------ceeEee-------cccc
Confidence 33445889999999999955999999999999999999987 455555 7887
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
. .|+++.|.|+|.-+++|+.|++.++||++..
T Consensus 230 s-DINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 230 S-DINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred c-ccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 7 4999999999999999999999999999983
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=291.38 Aligned_cols=188 Identities=19% Similarity=0.334 Sum_probs=156.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 004739 32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 111 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 111 (732)
-+|||+|+|.+||+|...+|.|..++ +..++.|+.++..|+. ..|++++ .-.||+||+++.+. .|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpdk--~~LAaa~-~qhvRlyD~~S~np--------~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPDK--KDLAAAG-NQHVRLYDLNSNNP--------NPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCCc--chhhhcc-CCeeEEEEccCCCC--------CceeE
Confidence 48999999999999999999999999 5667889999999993 6777765 57899999997653 46899
Q ss_pred eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE
Q 004739 112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 191 (732)
Q Consensus 112 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 191 (732)
+.+|...|+++.|..++ +.+++|++||+++|||++..... ....+..+|+++.
T Consensus 79 ~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vv 131 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVV 131 (311)
T ss_pred EeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEE
Confidence 99999999999999954 99999999999999999985421 1123456899999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCe
Q 004739 192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 271 (732)
Q Consensus 192 ~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~ 271 (732)
.+|+ ...|++|..+|.|++||+.... |.....|.. ..+|.++...|+|++|+++...|.
T Consensus 132 lhpn-QteLis~dqsg~irvWDl~~~~-------------c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 132 LHPN-QTELISGDQSGNIRVWDLGENS-------------CTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ecCC-cceEEeecCCCcEEEEEccCCc-------------cccccCCCC-------CcceeeEEEcCCCcEEEEecCCcc
Confidence 9999 4589999999999999998753 222222221 225999999999999999999999
Q ss_pred EEEEECCC
Q 004739 272 VYLMDVNH 279 (732)
Q Consensus 272 v~iwd~~~ 279 (732)
.++|++-+
T Consensus 191 cyvW~l~~ 198 (311)
T KOG0315|consen 191 CYVWRLLN 198 (311)
T ss_pred EEEEEccC
Confidence 99999876
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-41 Score=318.67 Aligned_cols=280 Identities=18% Similarity=0.237 Sum_probs=247.9
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEEEeC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE 137 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~ 137 (732)
.+.+.+|..+.|+++ ++.|+||+.+|.++||+.... ..+.++.+|...|.++.|+|. ++..+|||+.
T Consensus 172 ~gd~rPis~~~fS~d--s~~laT~swsG~~kvW~~~~~----------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~ 239 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRD--SKHLATGSWSGLVKVWSVPQC----------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA 239 (459)
T ss_pred ccCCCcceeeEeecC--CCeEEEeecCCceeEeecCCc----------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence 367889999999999 499999999999999999864 237899999999999999997 4678999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
||++++|++.+.. .+....+|...|..++|+|+ |++|+|++.|.+-|+||+++.
T Consensus 240 Dgtvklw~~~~e~-------------------------~l~~l~gH~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 240 DGTVKLWKLSQET-------------------------PLQDLEGHLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred CCceeeeccCCCc-------------------------chhhhhcchhhheeeeecCC-Cceeeecccccchhhcccccc
Confidence 9999999998865 35556678889999999999 899999999999999999998
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceee
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 297 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (732)
..+-.. .||.. .|.+++|+|||..+++|+.|..-+|||++++.
T Consensus 294 ~ElL~Q--------------------EGHs~-~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---------------- 336 (459)
T KOG0272|consen 294 SELLLQ--------------------EGHSK-GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---------------- 336 (459)
T ss_pred hhhHhh--------------------ccccc-ccceeEecCCCceeeccCccchhheeecccCc----------------
Confidence 654332 77877 59999999999999999999999999999832
Q ss_pred eccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhh
Q 004739 298 FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLC 377 (732)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 377 (732)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0272|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHH
Q 004739 378 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI 457 (732)
Q Consensus 378 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l 457 (732)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0272|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc
Q 004739 458 AAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL 537 (732)
Q Consensus 458 ~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~ 537 (732)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0272|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCC
Q 004739 538 HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD 617 (732)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~D 617 (732)
++..|.||...|..|. |||+|..|||||.|
T Consensus 337 ----------------------------------------------~im~L~gH~k~I~~V~----fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 337 ----------------------------------------------CIMFLAGHIKEILSVA----FSPNGYHLATGSSD 366 (459)
T ss_pred ----------------------------------------------EEEEecccccceeeEe----ECCCceEEeecCCC
Confidence 2334567877765555 69999999999999
Q ss_pred CcEEEEEcCcccEEEEEecCcccEEEEeecC-CCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC-----chhHHHHH
Q 004739 618 GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHP-FDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-----TADVLEAM 691 (732)
Q Consensus 618 g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp-~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~-----~~~~~~~~ 691 (732)
++++|||++-.+++.++.+|+..|+.|.|+| .|.+|+|+|.|++++||...+..++.++.||.+.| .++...++
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 9999999999999999999999999999999 67799999999999999999999999999999887 46778888
Q ss_pred HHHHHHhhhccc
Q 004739 692 ESNQRKLSRNRE 703 (732)
Q Consensus 692 ~~~~~~~~~~~~ 703 (732)
+.+.|++.++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999988884
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-39 Score=315.31 Aligned_cols=553 Identities=13% Similarity=0.159 Sum_probs=359.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
|.-.|.|+.++-.. .+.|.+-++++......+ ..|...++-..|+|. |.++++|...|+|||||......
T Consensus 24 ig~dpkgd~ilY~n-Gksv~ir~i~~~~~~~iY-tEH~~~vtVAkySPs--G~yiASGD~sG~vRIWdtt~~~h------ 93 (603)
T KOG0318|consen 24 IGGDPKGDNILYTN-GKSVIIRNIDNPASVDIY-TEHAHQVTVAKYSPS--GFYIASGDVSGKVRIWDTTQKEH------ 93 (603)
T ss_pred eccCCCCCeEEEeC-CCEEEEEECCCccceeee-ccccceeEEEEeCCC--ceEEeecCCcCcEEEEeccCcce------
Confidence 45567776555443 357889999988887777 799999999999999 68999999999999999875321
Q ss_pred CCCCceeeccccCceeEEEEecCCCcEEEEEe-CC--CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED--GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
.....++...++|..|+|++++.+++|+|- ++ |.+.+||.-+. +-+..
T Consensus 94 --iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---------------------------vGei~ 144 (603)
T KOG0318|consen 94 --ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---------------------------VGEIT 144 (603)
T ss_pred --eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---------------------------cceee
Confidence 123456667889999999997755554442 22 34566764332 33455
Q ss_pred CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004739 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 261 (732)
Q Consensus 182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 261 (732)
+|...|.+++|-|..+-++++|+.|++|.+|+=.-.+-..++ ..|+. -|+++.|+|||.
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~--------------------r~Hsk-FV~~VRysPDG~ 203 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF--------------------REHSK-FVNCVRYSPDGS 203 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc--------------------ccccc-ceeeEEECCCCC
Confidence 778899999999998999999999999999975433221111 34555 599999999999
Q ss_pred EEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHh
Q 004739 262 EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARN 341 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~ 341 (732)
++++++.||+|.+||-.+++....+. ....|...+.++.++||+.+++ +++.|.++++ |
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~-------------~~~aHkGsIfalsWsPDs~~~~---T~SaDkt~KI-----W 262 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELE-------------DSDAHKGSIFALSWSPDSTQFL---TVSADKTIKI-----W 262 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEec-------------CCCCccccEEEEEECCCCceEE---EecCCceEEE-----E
Confidence 99999999999999999976433222 3567888899999999999999 9999999999 9
Q ss_pred hhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHH
Q 004739 342 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE 421 (732)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (732)
+....+.. ..+..... +... .+.---+.+.+++.+..+++...+.+. +.
T Consensus 263 dVs~~slv-~t~~~~~~-v~dq--qvG~lWqkd~lItVSl~G~in~ln~~d------~~--------------------- 311 (603)
T KOG0318|consen 263 DVSTNSLV-STWPMGST-VEDQ--QVGCLWQKDHLITVSLSGTINYLNPSD------PS--------------------- 311 (603)
T ss_pred EeeccceE-EEeecCCc-hhce--EEEEEEeCCeEEEEEcCcEEEEecccC------CC---------------------
Confidence 88877632 11000000 0000 000000011333444444444333320 00
Q ss_pred HhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCC------CCCCCccccccccccccccC
Q 004739 422 QLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARS------EPRTGRVLSLSDIIYRSEAN 495 (732)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~ 495 (732)
......+|...+.++..+|+ +.+|.+++.|+.+.-|+..... ..++..+..|..-....-..
T Consensus 312 -~~~~i~GHnK~ITaLtv~~d-----------~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 312 -VLKVISGHNKSITALTVSPD-----------GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred -hhheecccccceeEEEEcCC-----------CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 01111234444777788887 6889999999999999854311 12333333221100000000
Q ss_pred CCCCCCCCCCCCCCCChhhh--hhhc--ccCCCCCCCCcccccccccCCcce------eeccCCCCccccccCCCCCCCC
Q 004739 496 SDASQDGPRSEREDSDYDEE--VEVD--FHTSVPGDEGRDVEANFLHGSLNV------RIHRRGDSARETVDANGSSGSP 565 (732)
Q Consensus 496 ~~~s~d~~~~~~~~~~~~~~--~~~~--~~~~~s~~~d~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~d~~~l~ 565 (732)
..+-..-...+-.++.+... .+.. .+-++..+.+...-+-...+-.++ ........+.+++++||++++|
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 00000000000000000000 0011 111111111112111111111111 1111334468999999999999
Q ss_pred CCCCCCCCCccccccc-cccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEec-CcccEEE
Q 004739 566 SSSSQNDRIPYQPETV-IDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLG-DEAVVNC 643 (732)
Q Consensus 566 ~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~g-H~~~V~~ 643 (732)
.|+.++...+|...+. ......+..|..++++|. +|||+.|||+|...+.|-+||+++.+....--+ |++.|++
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va----ySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA----YSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEE----ECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 9998888888887763 345557788999988887 799999999999999999999999998555555 9999999
Q ss_pred EeecCCCCeEEEecCCCcEEEEcCCCCCCc-cccCCCCCCCc----hhHHHHHHHHHHHhhhccccc
Q 004739 644 VQCHPFDCVVATSGIDNTIKIWTPSASVPS-IVSGGAAGPDT----ADVLEAMESNQRKLSRNREHS 705 (732)
Q Consensus 644 v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~-~~~~gh~~~~~----~~~~~~~~~~~~~~~~~~~~~ 705 (732)
|+|+|+..++||||.|-+|.||+++..... .....|.+.++ .+-..+++..+|.-.++|..+
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 999999999999999999999999876644 44555776664 345566777777777777643
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1e-38 Score=319.91 Aligned_cols=554 Identities=14% Similarity=0.142 Sum_probs=342.3
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC--
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-- 84 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-- 84 (732)
-++-+.+.-|..+++|++|+++|+++|+|- ....++||++.....+..| ..|+-.|+|++|+|. ++++++.+.
T Consensus 68 ~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~--~kyvvSVGsQH 144 (1080)
T KOG1408|consen 68 CTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPG--NKYVVSVGSQH 144 (1080)
T ss_pred cchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCC--CcEEEeecccc
Confidence 345556677889999999999999999984 6778999999999999999 799999999999998 589998875
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC-----
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH----- 159 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----- 159 (732)
|-.|.+||.+... ...-..-...|..++|+.++ .+++|.+. ..|++|.++.++......+..
T Consensus 145 DMIVnv~dWr~N~-----------~~asnkiss~Vsav~fsEdg-SYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~ 211 (1080)
T KOG1408|consen 145 DMIVNVNDWRVNS-----------SGASNKISSVVSAVAFSEDG-SYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYF 211 (1080)
T ss_pred ceEEEhhhhhhcc-----------cccccccceeEEEEEEccCC-ceeeeeee-eeEEEEEeeccccccCCccccchhhh
Confidence 6678899887422 12222345678999999855 89988875 689999998776321111000
Q ss_pred --cccceEEeeccCC---------------ccccccC-------CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 160 --QECRNILLDLRCG---------------AKRSLAD-------PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 160 --~~~~~~~~~~~~~---------------~~~~~~~-------~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
.-....+....++ ....+.. ..-......||+.+ .++|++|+.+|+|++|+..
T Consensus 212 lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs---~r~I~cgCa~g~vrlFnp~ 288 (1080)
T KOG1408|consen 212 LGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS---SRLIACGCAKGMVRLFNPE 288 (1080)
T ss_pred ccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee---cceEEEeeccceeeecCcc
Confidence 0000001111111 1000000 00112234566666 4599999999999999998
Q ss_pred CCCCCcccccCCCCCCccccc-ccccccc---CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee---ee
Q 004739 216 MLPPLTSCQKRMSPPPCVNYF-CPMHLSE---HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR---YT 288 (732)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~ 288 (732)
+..-..+++.......-+... .+.++.. .+.-. ....+.|++....|.+...|..++|||++..+++... ..
T Consensus 289 tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fP-D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly 367 (1080)
T KOG1408|consen 289 TLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFP-DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY 367 (1080)
T ss_pred hhhhccccccccccccchhhcccccccccccCcccCC-ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee
Confidence 877666665433221111110 0111100 11111 2457899999999999999999999999987654332 23
Q ss_pred cCCCCceeeecc-CCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC
Q 004739 289 VGDASKIMSFTP-TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI 367 (732)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 367 (732)
|...+..+...| ..+.. ..+-.|.+- +++++.|++|++ |+++-+.. +.++.. +..
T Consensus 368 HS~ciW~Ve~~p~nv~~~-----~~aclp~~c----F~TCSsD~TIRl-----W~l~~ctn--------n~vyrR--Nil 423 (1080)
T KOG1408|consen 368 HSACIWDVENLPCNVHSP-----TAACLPRGC----FTTCSSDGTIRL-----WDLAFCTN--------NQVYRR--NIL 423 (1080)
T ss_pred ccceeeeeccccccccCc-----ccccCCccc----eeEecCCCcEEE-----eecccccc--------cceeec--ccc
Confidence 333332222222 11100 001112222 125666666666 55553221 011000 000
Q ss_pred CCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhH
Q 004739 368 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 447 (732)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 447 (732)
+. +.....+.......+.+..... ..+. ....-.....+++++.+|+
T Consensus 424 s~------------~l~ki~y~d~~~q~~~d~~~~~------------fdka----~~s~~d~r~G~R~~~vSp~----- 470 (1080)
T KOG1408|consen 424 SA------------NLSKIPYEDSTQQIMHDASAGI------------FDKA----LVSTCDSRFGFRALAVSPD----- 470 (1080)
T ss_pred hh------------hhhcCccccCchhhhhhccCCc------------cccc----chhhcCcccceEEEEECCC-----
Confidence 00 0000000000000000000000 0000 0000011123677888998
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCC-----CCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccC
Q 004739 448 EKVENIKKHIAAAETEKNNKANDGGAR-----SEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHT 522 (732)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 522 (732)
+++||++...+++++++.... .+.+..+++. +.+|-.- ...++
T Consensus 471 ------gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc-----------LeyS~p~---------------~~~kL 518 (1080)
T KOG1408|consen 471 ------GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC-----------LEYSFPV---------------LTNKL 518 (1080)
T ss_pred ------cceecccCccCceEEEEehhhhhhhheecccceeEE-----------EeecCch---------------hhhHh
Confidence 899999999999999874321 1222222222 2222110 12388
Q ss_pred CCCCCCCcccccccc--cCCcceeeccCCCCc------------------------------------------------
Q 004739 523 SVPGDEGRDVEANFL--HGSLNVRIHRRGDSA------------------------------------------------ 552 (732)
Q Consensus 523 ~~s~~~d~~~~~~~~--~~~~~~~~~~~~~~v------------------------------------------------ 552 (732)
+++++.|+.|.++++ +-.+..++.+|...|
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 999999999999887 233444455544444
Q ss_pred -cccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEE
Q 004739 553 -RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLI 631 (732)
Q Consensus 553 -~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~ 631 (732)
..++..|..+++++++.+...+|++... +++++.|+|..+....+..+.. .|.|-|||+.+.|.++.++|.-+|+|+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~l-DPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVIL-DPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEE-CCCccEEEEeecCCceEEEEeccchhh
Confidence 5566666666888887777888898888 8999999987666333444554 999999999999999999999999999
Q ss_pred EEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004739 632 KMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPS 673 (732)
Q Consensus 632 ~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~ 673 (732)
++..||++.||++.|++|.+.|+|++.||.|.||.+.....+
T Consensus 677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii 718 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMII 718 (1080)
T ss_pred hhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhH
Confidence 999999999999999999999999999999999998764443
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=306.64 Aligned_cols=211 Identities=18% Similarity=0.299 Sum_probs=179.5
Q ss_pred ccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 9 LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
-+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++ .+|..+|.+++|++. |..++|++.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~ 280 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC--GTSFLSASFDR 280 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc--CCeeeeeecce
Confidence 356789999999999999999 889999999999999999876 8899999 799999999999999 59999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.|++||++++.. +..+. ....++++.|+|++.+.|++|+.|+.|+.||+++++
T Consensus 281 ~lKlwDtETG~~----------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---------------- 333 (503)
T KOG0282|consen 281 FLKLWDTETGQV----------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---------------- 333 (503)
T ss_pred eeeeeccccceE----------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----------------
Confidence 999999998532 44443 245789999999988999999999999999999987
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
.+.....|...|..+.|-++ +.++++.+.|+.++||+.+...++...... ..|
T Consensus 334 ---------vvqeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~i~~~-----------------~~h 386 (503)
T KOG0282|consen 334 ---------VVQEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKNIADP-----------------EMH 386 (503)
T ss_pred ---------HHHHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchhhcch-----------------hhc
Confidence 34444567779999999998 789999999999999999877655433110 112
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
...++..+|+++++++-+.|+.|.||.+..
T Consensus 387 ---smP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 387 ---TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred ---cCcceecCCCCCeehhhccCceEEEEeccc
Confidence 367899999999999999999999997544
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=292.62 Aligned_cols=209 Identities=19% Similarity=0.202 Sum_probs=167.9
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~---~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
+..++|..|++.|.-+.||++|++|||++.|.+..||++... +..+++ .+|..+|..+.|||+ +++|++|+.|.
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e 291 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE 291 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence 456778899999999999999999999999999999987544 346666 799999999999999 49999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.+.+||+.++.... ..-.+|...+.+.+|.||+ ..|++|+.|+.|..||+.....- -
T Consensus 292 ~~~lwDv~tgd~~~---------~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~-------------~ 348 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRH---------LYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILG-------------N 348 (519)
T ss_pred heeeccCCcchhhh---------hcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhh-------------c
Confidence 99999999864321 1122356899999999965 78899999999999999765411 0
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
| ..+ ....|.+++..+| |+++++.+.|..|++++..+....... ..+
T Consensus 349 W-------~gv-----r~~~v~dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~li--------------------se~ 395 (519)
T KOG0293|consen 349 W-------EGV-----RDPKVHDLAITYD-GKYVLLVTVDKKIRLYNREARVDRGLI--------------------SEE 395 (519)
T ss_pred c-------ccc-----ccceeEEEEEcCC-CcEEEEEecccceeeechhhhhhhccc--------------------ccc
Confidence 0 000 1126899999999 788888889999999998865433211 112
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|+++.+|.+++++++.-.+..+++||++.
T Consensus 396 --~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 396 --QPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred --CceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 2599999999999999999999999999886
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-37 Score=311.99 Aligned_cols=439 Identities=12% Similarity=0.096 Sum_probs=332.8
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.+.+-+++.||.+.|+++.|+.|.++|++|+.|-+++||++...+- .+.+ .+|++.|.++-|..++ ..+++.+.|
T Consensus 134 pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~VvacfF~~~~--~~l~tvskd 210 (893)
T KOG0291|consen 134 PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVACFFGANS--LDLYTVSKD 210 (893)
T ss_pred cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEEEeccCc--ceEEEEecC
Confidence 5667788999999999999999999999999999999999886654 4455 7999999999999985 789999999
Q ss_pred CcEEEEEcCCCCCCCCC-----------------CCCCCC-------ceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004739 86 AEVRLFNLSRFSGRGLD-----------------DNAITP-------SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 141 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~-----------------~~~~~~-------~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 141 (732)
|.+.+|........... ..+... ..-+......|++.+|++ +.++|+++-..|..
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEF 289 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCee
Confidence 99999988732111100 000000 111222236799999999 67999999999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCC
Q 004739 142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPL 220 (732)
Q Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~ 220 (732)
.+|.+.....+ .........|..++|+.. |.+|+.|+.. |.+-||+.++..-+
T Consensus 290 ~LyelP~f~li-------------------------h~LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 290 GLYELPDFNLI-------------------------HSLSISDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred EEEecCCceEE-------------------------EEeecccceeeEEEeccc-CCEEEEcCCccceEEEEEeecccee
Confidence 99998776522 111122347889999988 7899998876 89999999876433
Q ss_pred cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
.+. +||.. .+++++++|||+++++|+.||.|+|||.+++.+..
T Consensus 344 lKQ--------------------QgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v---------------- 386 (893)
T KOG0291|consen 344 LKQ--------------------QGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV---------------- 386 (893)
T ss_pred eec--------------------ccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE----------------
Confidence 322 67777 59999999999999999999999999999854322
Q ss_pred CCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHH
Q 004739 301 TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRA 380 (732)
Q Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 380 (732)
++..|...+..+.|...|+.+. +++.|++++. |++....+|. .+
T Consensus 387 TFteHts~Vt~v~f~~~g~~ll---ssSLDGtVRA-----wDlkRYrNfR--------Tf-------------------- 430 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARGNVLL---SSSLDGTVRA-----WDLKRYRNFR--------TF-------------------- 430 (893)
T ss_pred EeccCCCceEEEEEEecCCEEE---EeecCCeEEe-----eeecccceee--------ee--------------------
Confidence 5667778888888888888888 8888888887 7776555431 00
Q ss_pred HHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004739 381 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 460 (732)
Q Consensus 381 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~ 460 (732)
..|..
T Consensus 431 ----------------------------------------------------------t~P~p----------------- 435 (893)
T KOG0291|consen 431 ----------------------------------------------------------TSPEP----------------- 435 (893)
T ss_pred ----------------------------------------------------------cCCCc-----------------
Confidence 01110
Q ss_pred HhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCC-cccccccc-c
Q 004739 461 ETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG-RDVEANFL-H 538 (732)
Q Consensus 461 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d-~~~~~~~~-~ 538 (732)
.+- +.++.-|.| .++.+|+.| -.|.+|.+ +
T Consensus 436 -----------------~Qf-------------scvavD~sG------------------elV~AG~~d~F~IfvWS~qT 467 (893)
T KOG0291|consen 436 -----------------IQF-------------SCVAVDPSG------------------ELVCAGAQDSFEIFVWSVQT 467 (893)
T ss_pred -----------------eee-------------eEEEEcCCC------------------CEEEeeccceEEEEEEEeec
Confidence 000 011112223 455555554 45889998 6
Q ss_pred CCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCC
Q 004739 539 GSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDG 618 (732)
Q Consensus 539 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg 618 (732)
|+++-.+.+|+.+|.+++|+|++..||+++=|++.++|+.-.....+.++. +...++.+. |+|||+-||.+.-||
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs----frPdG~elaVaTldg 542 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS----FRPDGKELAVATLDG 542 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEE----EcCCCCeEEEEEecc
Confidence 899999999999999999999999999998888888899876544555554 444444444 599999999999999
Q ss_pred cEEEEEcCcccEEEEEec--------------------CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004739 619 RWFIWEKQTGRLIKMLLG--------------------DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 677 (732)
Q Consensus 619 ~i~iWd~~tg~~~~~l~g--------------------H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~ 677 (732)
.|-+||.+.+..+..+.| -....+.+++|+||.+|++||....|+|+++.++-.+..|.
T Consensus 543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence 999999988766644432 12578899999999999999999999999999999887764
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-37 Score=285.97 Aligned_cols=197 Identities=16% Similarity=0.279 Sum_probs=170.5
Q ss_pred hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
.++.++.+.+.+.||..+|+.+-|+|+-..+++++.|++|++||..++++...+ ++|...|..++|+.. |++|++|+
T Consensus 93 ~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l~tcS 169 (406)
T KOG0295|consen 93 LWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYLATCS 169 (406)
T ss_pred hcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEEEecC
Confidence 466777888889999999999999999999999999999999999999998888 899999999999998 69999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.|=.+++||..+. ..+++.+.+|...|.++.|-|.+ +++++++.|.+|+.|++.++-
T Consensus 170 sDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~------------- 226 (406)
T KOG0295|consen 170 SDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY------------- 226 (406)
T ss_pred CccchhheeHHHH---------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce-------------
Confidence 9999999999863 24578889999999999999965 999999999999999999986
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.+...++|...|..+..+.| |.++++++.|.+|++|-+.+++....+
T Consensus 227 ------------cv~t~~~h~ewvr~v~v~~D-Gti~As~s~dqtl~vW~~~t~~~k~~l-------------------- 273 (406)
T KOG0295|consen 227 ------------CVKTFPGHSEWVRMVRVNQD-GTIIASCSNDQTLRVWVVATKQCKAEL-------------------- 273 (406)
T ss_pred ------------eEEeccCchHhEEEEEecCC-eeEEEecCCCceEEEEEeccchhhhhh--------------------
Confidence 34455667779999999998 899999999999999999987433322
Q ss_pred CCCccccEEEEEEcCCC
Q 004739 244 HGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g 260 (732)
..|.- +|-+++|.|..
T Consensus 274 R~hEh-~vEci~wap~~ 289 (406)
T KOG0295|consen 274 REHEH-PVECIAWAPES 289 (406)
T ss_pred hcccc-ceEEEEecccc
Confidence 34444 68899988754
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=274.90 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=180.0
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
++..+.||++.|+.+.|+|+|.+||||+.|..|.+|++... +-...+ ++|.++|..+.|.++ +..|++++.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTVR 115 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceEE
Confidence 45567899999999999999999999999999999996543 444555 799999999999999 59999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
.||.++++ .++.+++|..-|+++..+.-+..++.+++.||++++||+++...+
T Consensus 116 ~wD~~tG~----------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----------------- 168 (338)
T KOG0265|consen 116 GWDAETGK----------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----------------- 168 (338)
T ss_pred EEecccce----------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-----------------
Confidence 99999853 378899999999999876667789999999999999999987632
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
........++++.|.-. +..+.+|+-|+.|++||++....+..+ .||.+
T Consensus 169 ---------~t~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D- 217 (338)
T KOG0265|consen 169 ---------KTFENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD- 217 (338)
T ss_pred ---------hccccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC-
Confidence 11123458999999987 789999999999999999987655544 77887
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|+.+..+|+|.++.+-+.|.++++||++.
T Consensus 218 tIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 218 TITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ceeeEEeccCCCccccccccceEEEEEecc
Confidence 699999999999999999999999999987
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-35 Score=265.71 Aligned_cols=215 Identities=22% Similarity=0.302 Sum_probs=183.0
Q ss_pred hhccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCC-----CCeeEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHSANVFCTKFVPETSDELVV 80 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~-----~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~ 80 (732)
+.+.+..+|++|++.|+.++..+. .+.|++++.|.++.+|++. .|..++.+ .+|...|..+..+++ |++.+
T Consensus 3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~al 79 (315)
T KOG0279|consen 3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFAL 79 (315)
T ss_pred hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEE
Confidence 345677889999999999999986 4689999999999999875 46677888 899999999999999 59999
Q ss_pred EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+++.|+++++||+.++ ++.+.|.+|...|.+++|+|++ +.+++|+.|.+|++|++......
T Consensus 80 S~swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~-------- 140 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY-------- 140 (315)
T ss_pred eccccceEEEEEecCC----------cEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE--------
Confidence 9999999999999975 3378999999999999999965 88999999999999998665311
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
.+.. ..+...|.++.|+|.. ...|++++.|++|++||+++.+....+
T Consensus 141 ---------------t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~---------------- 188 (315)
T KOG0279|consen 141 ---------------TIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF---------------- 188 (315)
T ss_pred ---------------EEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc----------------
Confidence 1111 1125699999999984 458999999999999999987765544
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.||.+ .++.+++||||..+++|+.||.+.+||++.+
T Consensus 189 ----~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 189 ----IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred ----ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 66766 5999999999999999999999999999984
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=275.11 Aligned_cols=211 Identities=16% Similarity=0.242 Sum_probs=179.6
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
-+.+|..|+++|.+++.+|+.+++|||+.|....||++.++.....+ .+|+..|+++.|+.+ |.+|+||+-+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEEE
Confidence 45678999999999999999999999999999999999999999888 899999999999999 599999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
|+..++.. ...+..--..+.=+.|+| -.++|+.|+.||.+-+|.+.+...
T Consensus 133 ~~~stg~~----------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~------------------- 182 (399)
T KOG0296|consen 133 FKVSTGGE----------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL------------------- 182 (399)
T ss_pred EEcccCce----------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce-------------------
Confidence 99997543 233434456678889999 559999999999999999987542
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
.....+|..++++=.|.|+ |++++++..||+|++|++.+++++.++.. ..+..
T Consensus 183 ------~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~--------------------~e~~~ 235 (399)
T KOG0296|consen 183 ------CKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQ--------------------AEGLE 235 (399)
T ss_pred ------eeEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEecc--------------------cccCc
Confidence 2334567779999999999 89999999999999999999987766521 11224
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+++.++..+..++.|+.++.+++-+..+++
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccce
Confidence 6788889999999999999999999888765
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-36 Score=302.67 Aligned_cols=485 Identities=14% Similarity=0.133 Sum_probs=348.6
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.+...|++++.||+|.+|++....|.+.+-++.....++++ ..+..|.|++|||+ |.+++.|. .+.+.||.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f--~fk~~v~~i~fSPn--g~~fav~~-gn~lqiw~~P~~ 127 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRF--NFKRGVGAIKFSPN--GKFFAVGC-GNLLQIWHAPGE 127 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEE--eecCccceEEECCC--CcEEEEEe-cceeEEEecCcc
Confidence 47789999999999999999999999999998888888887 46788999999999 47776654 578999998753
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
.... -+.+...+++.+|.+.|+++.|+. +.++|++|+.|.++++|+++..+.. .
T Consensus 128 ~~~~--~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~-----------------------~ 181 (893)
T KOG0291|consen 128 IKNE--FNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNL-----------------------F 181 (893)
T ss_pred hhcc--cCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEecccccc-----------------------c
Confidence 3211 122344567889999999999998 5599999999999999999877632 1
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc----------------CCCCCCccccccccc
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----------------RMSPPPCVNYFCPMH 240 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 240 (732)
.....+|..+|.++-|..+ ..-+++.+.||.+.+|-.....+ ..... ..+...-.-.....+
T Consensus 182 ~~~l~gHkd~VvacfF~~~-~~~l~tvskdG~l~~W~~~~~P~-~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGAN-SLDLYTVSKDGALFVWTCDLRPP-ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred eEeccCCCcceEEEEeccC-cceEEEEecCceEEEEEecCCCc-ccccccccccccccccccccchhhhcceEEEEEEee
Confidence 2234568889999999998 67899999999999998763211 00000 000000000111111
Q ss_pred cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccc
Q 004739 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR 320 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (732)
... .....+++.+|++..+.|++|-..|...+|++........+-.. +.++..+.|...|..
T Consensus 260 ~ln--~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis----------------~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 260 YLN--QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS----------------DQKILTVSFNSTGDW 321 (893)
T ss_pred eec--ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc----------------cceeeEEEecccCCE
Confidence 211 12235999999999999999999999999999885433322222 224455556666666
Q ss_pred cccccccCcc-hhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhH
Q 004739 321 VRGEVATGLG-KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDC 399 (732)
Q Consensus 321 ~~~~~~~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 399 (732)
+| .++.. +.+.+ |+ |....|.--+++
T Consensus 322 iA---~g~~klgQLlV-----we---------------------------------------------WqsEsYVlKQQg 348 (893)
T KOG0291|consen 322 IA---FGCSKLGQLLV-----WE---------------------------------------------WQSESYVLKQQG 348 (893)
T ss_pred EE---EcCCccceEEE-----EE---------------------------------------------eeccceeeeccc
Confidence 66 22221 11111 32 222222222222
Q ss_pred HHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 004739 400 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRT 479 (732)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~ 479 (732)
|... +.+++++|| +++++++..|+.||+|+...
T Consensus 349 H~~~------------------------------i~~l~YSpD-----------gq~iaTG~eDgKVKvWn~~S------ 381 (893)
T KOG0291|consen 349 HSDR------------------------------ITSLAYSPD-----------GQLIATGAEDGKVKVWNTQS------ 381 (893)
T ss_pred cccc------------------------------eeeEEECCC-----------CcEEEeccCCCcEEEEeccC------
Confidence 2222 667788998 78999999999999998432
Q ss_pred Ccccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCC--cccc
Q 004739 480 GRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDS--ARET 555 (732)
Q Consensus 480 g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~--v~~~ 555 (732)
|-+ +.++.-|+.. .+.|+..| +.+.+.+-|++++.|++..-...+......+ -.|+
T Consensus 382 gfC--~vTFteHts~Vt~v~f~~~g------------------~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 382 GFC--FVTFTEHTSGVTAVQFTARG------------------NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred ceE--EEEeccCCCceEEEEEEecC------------------CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 222 2255556655 77888888 8999999999999999855444443333333 3677
Q ss_pred ccCCCCCCCCCCCCCC-CCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcc-cEEEE
Q 004739 556 VDANGSSGSPSSSSQN-DRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG-RLIKM 633 (732)
Q Consensus 556 ~~s~d~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg-~~~~~ 633 (732)
+..|-|..+..|+.+. +..+|+..+ ++++-.+.||.++|.++. |+|+|..|||||+|.+||+||+-.. ..+.+
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~----f~~~~~~LaS~SWDkTVRiW~if~s~~~vEt 516 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVSGLS----FSPDGSLLASGSWDKTVRIWDIFSSSGTVET 516 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcceeeE----EccccCeEEeccccceEEEEEeeccCceeee
Confidence 7778788777665332 455598888 899999999999966555 6999999999999999999998654 45566
Q ss_pred EecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCC
Q 004739 634 LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 678 (732)
Q Consensus 634 l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~g 678 (732)
|. +...|++|+|+|+|+.||.+.-||.|-+||+..+.+..+..|
T Consensus 517 l~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 517 LE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred Ee-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 66 788899999999999999999999999999999988866655
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-36 Score=287.52 Aligned_cols=207 Identities=16% Similarity=0.240 Sum_probs=165.1
Q ss_pred cEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC--e--eEEEEc---------cCCCcCeEEEEEecCCCCC
Q 004739 12 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR--K--LLHSIE---------TGHSANVFCTKFVPETSDE 77 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~--~--~~~~~~---------~~h~~~V~~~~~s~~~~g~ 77 (732)
.+.+. |+.+|.+.+|+|-.. +|++|+.|-+.++|++... . ....+. ......|++++|+.+ |.
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~ 248 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GT 248 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CC
Confidence 34455 999999999999665 8999999999999998741 1 100110 122367999999998 69
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004739 78 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 157 (732)
.|++|+.||.+++|+... ..+.++..|+++|.++.|+.. +++|++++.|+++.+||..++...
T Consensus 249 ~LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~----- 311 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVK----- 311 (524)
T ss_pred eEEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEE-----
Confidence 999999999999999884 337888999999999999995 499999999999999999887621
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
..+ .-|..+-..+.|-.+ .-+++++.|+.|+|+-+....|+.++
T Consensus 312 -------q~f-------------~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~-------------- 355 (524)
T KOG0273|consen 312 -------QQF-------------EFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTF-------------- 355 (524)
T ss_pred -------Eee-------------eeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceee--------------
Confidence 111 112223345677654 47999999999999999988777666
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.||++ +|.++.|.|.|.+|++++.|++++||++....
T Consensus 356 ------~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 356 ------IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred ------ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 67777 69999999999999999999999999988744
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=284.87 Aligned_cols=200 Identities=23% Similarity=0.373 Sum_probs=171.0
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
-+.+|..+.|.|+|+.|++|+..|.+.+|+......... .+.|+.+|.++.|+++ |..++||+.+|.|++|+....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti-lQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmn- 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI-LQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMN- 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH-hhhhcccceeEEEccC--CCEEEEcCCCceEEecccchh-
Confidence 356899999999999999999999999999754433333 3799999999999999 599999999999999998742
Q ss_pred CCCCCCCCCCCceeecccc-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 98 GRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
.++.++.|. ..|++++|+|.+ ..|++|+.||+|+|||....+..
T Consensus 171 ----------nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee------------------------ 215 (464)
T KOG0284|consen 171 ----------NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE------------------------ 215 (464)
T ss_pred ----------hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchh------------------------
Confidence 255666655 899999999954 88999999999999999877631
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
..+.+|...|.+++|+|. ..++++|+.|..|++||.+++..+.++ .+|.. .|..+.|
T Consensus 216 -~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f 272 (464)
T KOG0284|consen 216 -RVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKF 272 (464)
T ss_pred -heeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEE
Confidence 123567889999999999 569999999999999999999666554 66777 5999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|++++|++++.|..+++||+++
T Consensus 273 ~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 273 NPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred cCCCCeeEEccCCceEEEEehhH
Confidence 99999999999999999999886
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-35 Score=255.78 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=179.8
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
+..+.|.+|.++|+++.|+-||+|.++++.|.+|++|++..+.+++++ .+|...|..++.+.+. ..|++|+.|..+.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dn--skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDN--SKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccc--cccccCCCCceEE
Confidence 356788999999999999999999999999999999999999999999 8999999999999884 8999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+||+.+++ .++.+.+|...|+.++|+. ....+++|+.|.++++||.++....
T Consensus 85 vwDV~TGk----------v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e----------------- 136 (307)
T KOG0316|consen 85 VWDVNTGK----------VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE----------------- 136 (307)
T ss_pred EEEcccCe----------eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC-----------------
Confidence 99999853 3789999999999999998 5589999999999999999887632
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
+++........|.++..+ ++.|++|+.||++|.||++.+...... .+|
T Consensus 137 ------PiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy--------------------~g~--- 184 (307)
T KOG0316|consen 137 ------PIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDY--------------------FGH--- 184 (307)
T ss_pred ------ccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhh--------------------cCC---
Confidence 333334455688888887 568999999999999999988654322 223
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|+++.|+++++.+++++.|+++++.|-.+
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccch
Confidence 699999999999999999999999887665
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-36 Score=308.65 Aligned_cols=195 Identities=21% Similarity=0.264 Sum_probs=152.5
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
-++..-...++|..|++|+..||.|-.|..|++|.+...+ ++.+ .+. ++.+. +=+.+.|-.+.+-|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l--k~~------~~l~~-----~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL--KDA------SDLSN-----IDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc--cch------hhhcc-----ccccccchhhhhcc
Confidence 3444456789999999999999999999999999987653 2223 111 12221 22233444455566
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
.... .....+.+|.++|....|+|+. ++|++|++|+++|+|.+.+...
T Consensus 438 ~~~~----------~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~--------------------- 485 (707)
T KOG0263|consen 438 DDSS----------GTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSC--------------------- 485 (707)
T ss_pred ccCC----------ceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccccee---------------------
Confidence 5542 2256789999999999999955 9999999999999999998762
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
+....+|..+|..+.|+|. |.++|+++.|++-++|.....++++.+ .||-. .|.
T Consensus 486 ----~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRif--------------------aghls-DV~ 539 (707)
T KOG0263|consen 486 ----LVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIF--------------------AGHLS-DVD 539 (707)
T ss_pred ----EEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhh--------------------ccccc-ccc
Confidence 2223478889999999998 899999999999999999987776555 66766 499
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|+.|+|++.|+++|+.|.+|++||+.+
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCC
Confidence 999999999999999999999999877
No 27
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-34 Score=290.91 Aligned_cols=563 Identities=15% Similarity=0.099 Sum_probs=343.1
Q ss_pred ccEeeeccCCceeEEEEcCCCC---EEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEE-EC
Q 004739 11 QERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSG-AG 84 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~---~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~ 84 (732)
...++.||..+|+|+.|-|+.+ ++++|+.|+.|++|.++... ++..+ .+|...+.|+ ... ..+.++ +.
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~cv--~a~---~~~~~~~~a 119 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVCV--VAR---SSVMTCKAA 119 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEEE--Eee---eeEEEeecc
Confidence 4567899999999999999887 89999999999999998443 44555 4566555554 443 233333 68
Q ss_pred CCcEEEEEcCCCCCCCC----------------------------------------CCCCCCCceeeccccCceeEEEE
Q 004739 85 DAEVRLFNLSRFSGRGL----------------------------------------DDNAITPSALYQCHTRRVKKLAV 124 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~----------------------------------------~~~~~~~~~~~~~h~~~v~~l~~ 124 (732)
|+++.+||.+..+--+. .......+..+.||.+.|.+++|
T Consensus 120 d~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f 199 (764)
T KOG1063|consen 120 DGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAF 199 (764)
T ss_pred CceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhh
Confidence 99999999953220000 01112345678899999999999
Q ss_pred ecCCC--cEEEEEeCCCcEEEEECCCCCCCCC-----CCCCCc-ccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004739 125 EVGNP--HVVWSASEDGTLRQHDFRQGSSCPP-----AGSSHQ-ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 196 (732)
Q Consensus 125 ~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 196 (732)
...++ -+++++|.|..||+|.+.-...... ...... .....+.+.-.-....-....+|...|+++.|.|.
T Consensus 200 ~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~- 278 (764)
T KOG1063|consen 200 ARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE- 278 (764)
T ss_pred hccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc-
Confidence 87543 5788999999999999865542210 000000 00000000000000011223589999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEE
Q 004739 197 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 197 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd 276 (732)
+..|++++.|.++.+|......-+-.- ...+.+.++.........|+|+++.+++-+..|..++|.
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGiWv~--------------~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGIWVD--------------VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred hhhheecccCcceEEEecCCccceEEE--------------EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 778999999999999987654211100 011122333333589999999999999999999999998
Q ss_pred CCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHh
Q 004739 277 VNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEAC 356 (732)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 356 (732)
.+.. ......|...||...|..+++.|.|.++. +++.|.+-++... | |+.-. -.+..
T Consensus 345 t~d~-------------~~w~~~~~iSGH~~~V~dv~W~psGeflL---svs~DQTTRlFa~--w----g~q~~-wHEia 401 (764)
T KOG1063|consen 345 TKDK-------------TFWTQEPVISGHVDGVKDVDWDPSGEFLL---SVSLDQTTRLFAR--W----GRQQE-WHEIA 401 (764)
T ss_pred ccCc-------------cceeeccccccccccceeeeecCCCCEEE---Eeccccceeeecc--c----ccccc-eeeec
Confidence 3331 12334567789999999999999999999 9999999998444 3 11000 01112
Q ss_pred HHHHhcccCC-CCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHH
Q 004739 357 NEVLEGHLSG-IGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA 435 (732)
Q Consensus 357 ~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (732)
...+.||.-. ++--.....|++++..+..|.++...... +.+..+......
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv----------------------~~l~~i~g~~~~------ 453 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV----------------------KSLMAICGKCFK------ 453 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHH----------------------HHHHHHhCcccc------
Confidence 2233333221 00000012578888888888877431000 000000000000
Q ss_pred HhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCC-hhh
Q 004739 436 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSD-YDE 514 (732)
Q Consensus 436 ~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~~~ 514 (732)
.....|+. .+-..+.++ +-++-|+..++-.+.-+ .++
T Consensus 454 ~~~~~p~g----------------------------------A~VpaLGLS--------nKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 454 GSDELPDG----------------------------------ANVPALGLS--------NKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred Cchhcccc----------------------------------ccccccccc--------CCCCcccccccccccceeeec
Confidence 00000110 000000000 01111100000000000 000
Q ss_pred hhhhcc-cCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCc-----cccccccccceeE
Q 004739 515 EVEVDF-HTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIP-----YQPETVIDMKQRY 588 (732)
Q Consensus 515 ~~~~~~-~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~ 588 (732)
...... .+..-.-+|. +.. +.-.....++++|...|.+++.+|+++.+|+++.+...+- |+... +..++.+
T Consensus 492 ~~~~~p~~L~ePP~Edq-Lq~-~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L 568 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQ-LQQ-NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-WLQVQEL 568 (764)
T ss_pred ccccCchhccCCChHHH-HHH-hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-hhhhhee
Confidence 000000 0000000000 000 0012235688999999999999999999999986665543 77766 8888899
Q ss_pred eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCccc----EEEEEecCcccEEEEeecCCCCeEEEecCCCcEEE
Q 004739 589 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR----LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKI 664 (732)
Q Consensus 589 ~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~----~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~v 664 (732)
.+|.-.++.+. |||||+||+|.|+|+++.+|..+... ..+.++.|+..|+++.|+|+++++||+|.|.+|+|
T Consensus 569 ~~HsLTVT~l~----FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 569 EGHSLTVTRLA----FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred cccceEEEEEE----ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 99999988777 79999999999999999999976432 34568899999999999999999999999999999
Q ss_pred EcCCCC--CCccc--cCCCCCCCchhHHHHHHHH
Q 004739 665 WTPSAS--VPSIV--SGGAAGPDTADVLEAMESN 694 (732)
Q Consensus 665 W~~~~~--~~~~~--~~gh~~~~~~~~~~~~~~~ 694 (732)
|..... +.+.. ..-++.++++.....+..+
T Consensus 645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred EeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence 999887 44432 2235667665444444344
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=303.02 Aligned_cols=210 Identities=26% Similarity=0.424 Sum_probs=180.6
Q ss_pred cEeeecc-CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 12 ERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 12 ~~~l~~h-~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
...+.+| ...|.++.|+++|++|++++.|+.+++|+..+.+ ....+ .+|...|.+++|+|+ +.++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCceE
Confidence 5556555 8999999999999999999999999999998777 66666 799999999999999 5899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+|||+... + ..++++++|...|++++|+|++ +++++|+.|++|++||+++++.
T Consensus 228 riwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~----------------- 280 (456)
T KOG0266|consen 228 RIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC----------------- 280 (456)
T ss_pred EEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE-----------------
Confidence 99999432 2 3478999999999999999977 9999999999999999998762
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC--CcccccCCCCCCccccccccccccCCC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
+.....|...|++++|+++ +++|++++.|+.|+|||+.++.. +..+ .++
T Consensus 281 --------~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~--------------------~~~ 331 (456)
T KOG0266|consen 281 --------VRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLL--------------------SGA 331 (456)
T ss_pred --------EEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecc--------------------cCC
Confidence 3344567789999999999 88999999999999999998862 2222 223
Q ss_pred ccc-cEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 247 SSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 247 ~~~-~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
... +++++.|+|++++|++++.|+.+++||+..+
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 332 5999999999999999999999999999873
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.5e-35 Score=273.51 Aligned_cols=194 Identities=17% Similarity=0.312 Sum_probs=166.7
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
..++|+|+.+. ...+++|..|++|+|||..+-.+++.+ .||++.|.|+.|.. ..|++|+.|.+|+|||+.++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tg- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTG- 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeeccc----eEEEecCCCceEEEEeccCC-
Confidence 45789999985 567999999999999999999999888 89999999999975 58999999999999999984
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
+++.++.+|...|..+.|+. .++++++.|.+|.+||+..+..+ ...
T Consensus 268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i----------------------t~r 313 (499)
T KOG0281|consen 268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI----------------------TLR 313 (499)
T ss_pred ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH----------------------HHH
Confidence 45899999999999999964 68999999999999999876521 123
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
....+|...|+.+.|+ .+++++++.|.+|++|++.+.+-+..+ .||..+ |.|+.+
T Consensus 314 rVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkRG-IAClQY- 368 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKRG-IACLQY- 368 (499)
T ss_pred HHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhh--------------------hccccc-ceehhc-
Confidence 3456788899999998 459999999999999999998655444 777664 877776
Q ss_pred CCCCEEEEEecCCeEEEEECCC
Q 004739 258 PNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.++++++|+.|.+|++||+..
T Consensus 369 -r~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 369 -RDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred -cCeEEEecCCCceEEEEeccc
Confidence 689999999999999999877
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=268.50 Aligned_cols=213 Identities=19% Similarity=0.259 Sum_probs=183.3
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
|-...++.+.+.||.+.|.|+++.|-.++++||+.|++|+|||+.+++...++ .+|...|..+++|+.. .|+++++.
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rH--pYlFs~ge 213 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRH--PYLFSAGE 213 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccC--ceEEEecC
Confidence 33456778899999999999999999999999999999999999999999999 8999999999999986 89999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
|+.|+.||++.. +.++.+.||-..|.+++.+|.. +.|++|+.|.++++||+++..
T Consensus 214 dk~VKCwDLe~n----------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~-------------- 268 (460)
T KOG0285|consen 214 DKQVKCWDLEYN----------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRA-------------- 268 (460)
T ss_pred CCeeEEEechhh----------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccc--------------
Confidence 999999999963 3478899999999999999955 899999999999999999976
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
.+....+|..+|.++.+.|.+ -.+++|+.|++|++||++.++.+..+ .
T Consensus 269 -----------~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tl--------------------t 316 (460)
T KOG0285|consen 269 -----------SVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITL--------------------T 316 (460)
T ss_pred -----------eEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEee--------------------e
Confidence 345567888899999999984 48999999999999999988754433 2
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.|.. .+.+++.+|....+++++.| .|+-|++..
T Consensus 317 ~hkk-svral~lhP~e~~fASas~d-nik~w~~p~ 349 (460)
T KOG0285|consen 317 HHKK-SVRALCLHPKENLFASASPD-NIKQWKLPE 349 (460)
T ss_pred cccc-eeeEEecCCchhhhhccCCc-cceeccCCc
Confidence 2333 59999999998877877776 556665544
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=247.03 Aligned_cols=217 Identities=16% Similarity=0.249 Sum_probs=176.3
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
.++++.++++...+.|+.+...||++.||+++. ..||+||+.++. .+.++ .+|...|+++.|.-+ |+.+++|++
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~d--grWMyTgse 103 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCD--GRWMYTGSE 103 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEEEeec--CeEEEecCC
Confidence 367788999888899999999999999999876 679999998765 57778 799999999999999 699999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
||+++|||++... .+....|..+|+++..+|+. ..|++|..+|.|++||+.......
T Consensus 104 Dgt~kIWdlR~~~-----------~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~----------- 160 (311)
T KOG0315|consen 104 DGTVKIWDLRSLS-----------CQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTH----------- 160 (311)
T ss_pred CceEEEEeccCcc-----------cchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCcccc-----------
Confidence 9999999999743 24444578999999999954 677799999999999998764220
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
...+.....|.++...|+ |.+++.+...|.+++|++-..+....+ .|.+.. +
T Consensus 161 -------------~liPe~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~s~l-------------~P~~k~-~ 212 (311)
T KOG0315|consen 161 -------------ELIPEDDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTASEL-------------EPVHKF-Q 212 (311)
T ss_pred -------------ccCCCCCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCccccc-------------eEhhhe-e
Confidence 111223358999999999 889999999999999999875433222 111111 4
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.|.+ .+..+.+||++++|++++.|.+++||+..+
T Consensus 213 ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 213 AHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 4555 599999999999999999999999998876
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.3e-33 Score=247.48 Aligned_cols=220 Identities=20% Similarity=0.291 Sum_probs=183.2
Q ss_pred hccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCC---CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 8 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~---~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
++..++.+.+|++.|..++|+|- |..|||++.|+.||||+... -.+...+..+|+..|..++|+|. |++|++++
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aS 80 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASAS 80 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEee
Confidence 45678899999999999999997 89999999999999999884 45666666789999999999999 59999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.|.++.||.-.... ++++..+.||...|.+++|+++ +++||+|+.|+.|-||.+.....
T Consensus 81 FD~t~~Iw~k~~~e--------fecv~~lEGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~deddE------------ 139 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE--------FECVATLEGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEIDEDDE------------ 139 (312)
T ss_pred ccceEEEeecCCCc--------eeEEeeeeccccceeEEEEcCC-CCEEEEeeCCCeEEEEEecCCCc------------
Confidence 99999999766432 4678999999999999999995 59999999999999999885542
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
......+..|...|..+.|+|. ..+|++++.|++|++|+-.....- .|.+.+
T Consensus 140 ----------fec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW----------~c~~tl------- 191 (312)
T KOG0645|consen 140 ----------FECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDW----------ECVQTL------- 191 (312)
T ss_pred ----------EEEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCe----------eEEEEe-------
Confidence 1123334567778999999998 679999999999999987632211 233333
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|.+++|+|.|..|++++.|++|+||...+
T Consensus 192 ~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 192 DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cCccc-eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 66766 699999999999999999999999997554
No 33
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-33 Score=254.41 Aligned_cols=256 Identities=18% Similarity=0.184 Sum_probs=208.3
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
..+.+++.|+||...|..+..++||++.++++.|+++|+||+.+++..++| .+|...|.+++|+|+. ..|+||+.|.
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn--~qivSGSrDk 127 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDN--RQIVSGSRDK 127 (315)
T ss_pred ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCC--ceeecCCCcc
Confidence 345678999999999999999999999999999999999999999999999 7999999999999994 8999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccc--cCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
+|++|++.. .+..++..+ .+.|.++.|+|.. ..+|++++.|++|++||+++.+
T Consensus 128 Tiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~------------- 183 (315)
T KOG0279|consen 128 TIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ------------- 183 (315)
T ss_pred eeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-------------
Confidence 999999984 223444433 7899999999964 5789999999999999998876
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
....+.+|...++.+.++|| |.++++|+.||.+.+||++.++.+..+
T Consensus 184 ------------l~~~~~gh~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~lysl-------------------- 230 (315)
T KOG0279|consen 184 ------------LRTTFIGHSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLYSL-------------------- 230 (315)
T ss_pred ------------hhhccccccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeEec--------------------
Confidence 23455678889999999999 889999999999999999988765443
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccc
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG 323 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 323 (732)
.+.. .|.+++|+|+.-.|+.+. +..|+|||+.+......+.... ..|..+.-.....++++++||+.+.
T Consensus 231 -~a~~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~-------~g~s~~~~~~~clslaws~dG~tLf- 299 (315)
T KOG0279|consen 231 -EAFD-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDG-------IGPSSKAGDPICLSLAWSADGQTLF- 299 (315)
T ss_pred -cCCC-eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccc-------cccccccCCcEEEEEEEcCCCcEEE-
Confidence 1222 599999999986666555 4469999999865433221110 0112333344566789999999998
Q ss_pred ccccCcchhhHH
Q 004739 324 EVATGLGKCRML 335 (732)
Q Consensus 324 ~~~~~~d~~~~l 335 (732)
.+-.|+.+++
T Consensus 300 --~g~td~~irv 309 (315)
T KOG0279|consen 300 --AGYTDNVIRV 309 (315)
T ss_pred --eeecCCcEEE
Confidence 8888888888
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.3e-32 Score=274.64 Aligned_cols=207 Identities=27% Similarity=0.417 Sum_probs=173.5
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
++++++|.++|++++|+|++++|++++.||.|++|++.+++....+ ..|...+..+.|+|+ +++|++++.|+.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 4567899999999999999999999999999999999988877777 789999999999998 4799999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
++... ..+..+..|...+.++.|+|+ +.++++++.|+.|++||+.+.+..
T Consensus 79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~------------------- 128 (289)
T cd00200 79 DLETG----------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL------------------- 128 (289)
T ss_pred EcCcc----------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence 99863 225677788889999999995 578888888999999999865421
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
.....+...+.++.|+|+ +.++++++.|+.|++||+++.+.+..+ ..+.. .+
T Consensus 129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i 180 (289)
T cd00200 129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV 180 (289)
T ss_pred ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence 111235558999999998 778888888999999999876554433 22333 59
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.++.|+|+++.+++++.++.|++||+.+
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 181 NSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999999999999999999999999876
No 35
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.8e-33 Score=250.50 Aligned_cols=286 Identities=16% Similarity=0.206 Sum_probs=245.0
Q ss_pred EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004739 55 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134 (732)
Q Consensus 55 ~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 134 (732)
+.+ ++|.+.|.++.|++++ ++|++++.||.+.|||.-+... .+.+.--...|...+|+| .++++|.
T Consensus 49 r~L-kGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK----------~haipl~s~WVMtCA~sP-Sg~~VAc 114 (343)
T KOG0286|consen 49 RTL-KGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNK----------VHAIPLPSSWVMTCAYSP-SGNFVAC 114 (343)
T ss_pred EEe-cccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccc----------eeEEecCceeEEEEEECC-CCCeEEe
Confidence 445 8999999999999995 9999999999999999887432 455555678899999999 5599999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
|+-|+...||++.+.+.- +..+......+|...+.++.|-+| ..|+|++.|.++.+||+
T Consensus 115 GGLdN~Csiy~ls~~d~~-------------------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAE-------------------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDI 173 (343)
T ss_pred cCcCceeEEEeccccccc-------------------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEc
Confidence 999999999999866311 122334456789999999999986 48999999999999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCC
Q 004739 215 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS 293 (732)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 293 (732)
.+++.+..+ .||.+ .|.++.++| +++.+++|+.|+..++||++.+
T Consensus 174 e~g~~~~~f--------------------~GH~g-DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~------------- 219 (343)
T KOG0286|consen 174 ETGQQTQVF--------------------HGHTG-DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG------------- 219 (343)
T ss_pred ccceEEEEe--------------------cCCcc-cEEEEecCCCCCCeEEecccccceeeeeccCc-------------
Confidence 999877666 78888 499999999 9999999999999999998872
Q ss_pred ceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccch
Q 004739 294 KIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH 373 (732)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 373 (732)
T Consensus 220 -------------------------------------------------------------------------------- 219 (343)
T KOG0286|consen 220 -------------------------------------------------------------------------------- 219 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHH
Q 004739 374 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI 453 (732)
Q Consensus 374 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 453 (732)
T Consensus 220 -------------------------------------------------------------------------------- 219 (343)
T KOG0286|consen 220 -------------------------------------------------------------------------------- 219 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccc
Q 004739 454 KKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVE 533 (732)
Q Consensus 454 ~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~ 533 (732)
T Consensus 220 -------------------------------------------------------------------------------- 219 (343)
T KOG0286|consen 220 -------------------------------------------------------------------------------- 219 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEE
Q 004739 534 ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 613 (732)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~las 613 (732)
..+++|.||...+..|+ |-|+|.-+||
T Consensus 220 -------------------------------------------------~c~qtF~ghesDINsv~----ffP~G~afat 246 (343)
T KOG0286|consen 220 -------------------------------------------------QCVQTFEGHESDINSVR----FFPSGDAFAT 246 (343)
T ss_pred -------------------------------------------------ceeEeecccccccceEE----EccCCCeeee
Confidence 15577888988855555 5899999999
Q ss_pred ecCCCcEEEEEcCcccEEEEEecC--cccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCC-----chh
Q 004739 614 GSDDGRWFIWEKQTGRLIKMLLGD--EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPD-----TAD 686 (732)
Q Consensus 614 gs~Dg~i~iWd~~tg~~~~~l~gH--~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~-----~~~ 686 (732)
||.|+++++||++..+.++.+..- ...|++|+||-.|++|+.|..|.++.|||.-.++.+..+.||..++ ++|
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 999999999999999999999853 4689999999999999999999999999999999999999998887 477
Q ss_pred HHHHHHHHHHHhhhcc
Q 004739 687 VLEAMESNQRKLSRNR 702 (732)
Q Consensus 687 ~~~~~~~~~~~~~~~~ 702 (732)
...+.+.+=+...|+|
T Consensus 327 G~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIW 342 (343)
T ss_pred CcEEEecchhHheeec
Confidence 7778888877777777
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-32 Score=256.82 Aligned_cols=240 Identities=18% Similarity=0.234 Sum_probs=178.0
Q ss_pred hhhhccccEeee--ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecC-CCCCEEEE
Q 004739 5 LVRRLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVS 81 (732)
Q Consensus 5 ~~~~~~~~~~l~--~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~-~~g~~l~s 81 (732)
|++.+.....+. -|.+.|.++... +++++||++||+++||| ..|+....+ .+|.++|.+++|.-. .....|++
T Consensus 89 Yv~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 89 YVEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred EEEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEE-ecCCcceeeeEEEecCCccceEEE
Confidence 344444333333 388889988877 78999999999999999 557888888 799999998888643 21235999
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
++.|.++++|.++.+.... +.+..-+||...|.++...+++ ..+++|+.|.+|.+|+..+...-..-......
T Consensus 165 as~Dqtl~Lw~~~~~~~~~------~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKV------KALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ecCCceEEEEEecCchhhh------hHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhh
Confidence 9999999999988654322 3445556999999999999955 88999999999999994332211000000011
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
..........+...++....+|..+|.++.|++. ..+++++.|.+|+.||+.++..+.++.
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~----------------- 298 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLT----------------- 298 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeee-----------------
Confidence 1111122233344566777899999999999984 589999999999999999987665441
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+ +..++++..+|..++|++|+.|..+++||.++
T Consensus 299 ---~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 299 ---T--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred ---c--CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 1 12589999999999999999999999999887
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.3e-31 Score=304.48 Aligned_cols=204 Identities=19% Similarity=0.278 Sum_probs=162.8
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----e----eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
+.+|...|++++|+|+|++||+|+.|++|+|||+... . ....+ .+...|.+++|+|.. +.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence 4458999999999999999999999999999997532 1 12223 345679999999864 58999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
+|++||+.+. ..+..+.+|...|++++|+|.++.+|++|+.|+.|++||++++...
T Consensus 556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-------------- 611 (793)
T PLN00181 556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-------------- 611 (793)
T ss_pred eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE--------------
Confidence 9999999863 2367788999999999999866789999999999999999876521
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
. .+ . +...+.++.|.+.++.+|++|+.||.|++||+++.+ ++..+ .+
T Consensus 612 ~--------~~---~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--------------------~~ 659 (793)
T PLN00181 612 G--------TI---K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--------------------IG 659 (793)
T ss_pred E--------EE---e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--------------------cC
Confidence 0 00 0 113688999976558999999999999999998653 12111 44
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|.. .|+++.|. ++.+|++++.|++|++||+..
T Consensus 660 h~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 660 HSK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 555 59999997 678999999999999999875
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=256.33 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=151.3
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
....+ .+|..+|+.+-|+|+. ..+++++.|++|++||..+++ +...+++|.+.+.+|+|+.. +.++
T Consensus 100 l~~~l-~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~----------~e~~LrGHt~sv~di~~~a~-Gk~l 165 (406)
T KOG0295|consen 100 LVQKL-AGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGE----------LERSLRGHTDSVFDISFDAS-GKYL 165 (406)
T ss_pred chhhh-hccccceeeeeeccCc--eEEEEecCCceEEEEEccchh----------hhhhhhccccceeEEEEecC-ccEE
Confidence 33444 5899999999999995 788889999999999999853 36889999999999999984 4999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
++++.|-.+++||..+... .+....+|...|.++.|-|. +.++++++.|.+|+.|
T Consensus 166 ~tcSsDl~~~LWd~~~~~~------------------------c~ks~~gh~h~vS~V~f~P~-gd~ilS~srD~tik~W 220 (406)
T KOG0295|consen 166 ATCSSDLSAKLWDFDTFFR------------------------CIKSLIGHEHGVSSVFFLPL-GDHILSCSRDNTIKAW 220 (406)
T ss_pred EecCCccchhheeHHHHHH------------------------HHHHhcCcccceeeEEEEec-CCeeeecccccceeEE
Confidence 9999999999999876421 23444567778999999999 7899999999999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA 292 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 292 (732)
++.++..+.++ .+|.. +|..++.+.||.++++++.|.+|++|-+.+......+..+..+
T Consensus 221 e~~tg~cv~t~--------------------~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~ 279 (406)
T KOG0295|consen 221 ECDTGYCVKTF--------------------PGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP 279 (406)
T ss_pred ecccceeEEec--------------------cCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence 99998655444 66766 7999999999999999999999999999886544444444444
Q ss_pred Cceeee
Q 004739 293 SKIMSF 298 (732)
Q Consensus 293 ~~~~~~ 298 (732)
+..++|
T Consensus 280 vEci~w 285 (406)
T KOG0295|consen 280 VECIAW 285 (406)
T ss_pred eEEEEe
Confidence 443333
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=262.62 Aligned_cols=154 Identities=18% Similarity=0.278 Sum_probs=126.2
Q ss_pred CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004739 61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 140 (732)
Q Consensus 61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 140 (732)
....|+|+.+.. ..+++|..|++|+|||.... .++..+.||++.|.|+.|. .+.|++|+.|.+
T Consensus 196 ~skgVYClQYDD----~kiVSGlrDnTikiWD~n~~----------~c~~~L~GHtGSVLCLqyd---~rviisGSSDsT 258 (499)
T KOG0281|consen 196 NSKGVYCLQYDD----EKIVSGLRDNTIKIWDKNSL----------ECLKILTGHTGSVLCLQYD---ERVIVSGSSDST 258 (499)
T ss_pred cCCceEEEEecc----hhhhcccccCceEEeccccH----------HHHHhhhcCCCcEEeeecc---ceEEEecCCCce
Confidence 346799999875 47999999999999999863 4578899999999999994 479999999999
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~ 220 (732)
|++||.+++++ +.....|...|..+.|+. .++++++.|.++++||+.....+
T Consensus 259 vrvWDv~tge~-------------------------l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 259 VRVWDVNTGEP-------------------------LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred EEEEeccCCch-------------------------hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH
Confidence 99999999984 344456777899999985 39999999999999999875432
Q ss_pred cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
. |.+.+ .||.. .|+.+.|+ .+++++++.|.+|++|++.+
T Consensus 311 t----------~rrVL-------vGHrA-aVNvVdfd--~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 311 T----------LRRVL-------VGHRA-AVNVVDFD--DKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred H----------HHHHH-------hhhhh-heeeeccc--cceEEEecCCceEEEEeccc
Confidence 1 11222 66776 59999985 46999999999999998877
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-32 Score=260.77 Aligned_cols=306 Identities=19% Similarity=0.192 Sum_probs=235.5
Q ss_pred CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC-CCce---eeccccCceeEEEEecCCCcEEEEE
Q 004739 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI-TPSA---LYQCHTRRVKKLAVEVGNPHVVWSA 135 (732)
Q Consensus 60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~---~~~~h~~~v~~l~~~p~~~~~l~s~ 135 (732)
.|+.+|.+.+|+|.. ...+++++.|-+.++|++......+...... .++. .-...+..|++++|+.+ +.+||+|
T Consensus 176 ~~~~~V~~~~WnP~~-~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLR-DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATG 253 (524)
T ss_pred cCCCceEEEecCchh-hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEe
Confidence 499999999999985 3489999999999999998422211100000 0000 00112457999999984 5999999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
+.||.+++|+..... +.....|.++|.++.|+.. |.+|++++-|+++.+||..
T Consensus 254 ~~~G~~riw~~~G~l--------------------------~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNL--------------------------ISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAH 306 (524)
T ss_pred ecCcEEEEEecCchh--------------------------hhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEecc
Confidence 999999999986543 3344568889999999998 8999999999999999998
Q ss_pred CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCce
Q 004739 216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKI 295 (732)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 295 (732)
++.....+ .-|.. +-..+.|-.+. .+++.+.||.|+++.+......
T Consensus 307 ~g~~~q~f--------------------~~~s~-~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~------------ 352 (524)
T KOG0273|consen 307 TGTVKQQF--------------------EFHSA-PALDVDWQSND-EFATSSTDGCIHVCKVGEDRPV------------ 352 (524)
T ss_pred CceEEEee--------------------eeccC-CccceEEecCc-eEeecCCCceEEEEEecCCCcc------------
Confidence 77544433 11222 23557777655 4899999999999977652111
Q ss_pred eeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhh
Q 004739 296 MSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHEC 375 (732)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 375 (732)
T Consensus 353 -------------------------------------------------------------------------------- 352 (524)
T KOG0273|consen 353 -------------------------------------------------------------------------------- 352 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 004739 376 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK 455 (732)
Q Consensus 376 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 455 (732)
T Consensus 353 -------------------------------------------------------------------------------- 352 (524)
T KOG0273|consen 353 -------------------------------------------------------------------------------- 352 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccc
Q 004739 456 HIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEAN 535 (732)
Q Consensus 456 ~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~ 535 (732)
T Consensus 353 -------------------------------------------------------------------------------- 352 (524)
T KOG0273|consen 353 -------------------------------------------------------------------------------- 352 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC-------
Q 004739 536 FLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG------- 608 (732)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg------- 608 (732)
.++.+|+..|.++.|.|.|.+|++++.|.+.++|.... ....+.|.+|...++.|. +||+|
T Consensus 353 -------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~----wsp~g~v~~n~~ 420 (524)
T KOG0273|consen 353 -------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIK----WSPTGPVTSNPN 420 (524)
T ss_pred -------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEe----ecCCCCccCCCc
Confidence 23344666666777777777777777677777776555 568889999998877777 67755
Q ss_pred --CEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCC
Q 004739 609 --DYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAA 680 (732)
Q Consensus 609 --~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~ 680 (732)
-.|++++.|++|++||+..|.++++|..|+.+|++|+|||+|+|||||+.||.|.+|++++++...++.|-.
T Consensus 421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999998887643
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-32 Score=240.65 Aligned_cols=205 Identities=18% Similarity=0.248 Sum_probs=173.5
Q ss_pred cEeeeccCCceeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 12 ERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~---dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
..+..||+.+|-.++||| +|-+|++++.|+.-.+-+-++|..+.+| .+|+++|.......+. .+.++++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~na--~~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKNA--TRAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCchh--hhhhhhcccchh
Confidence 346679999999999995 8999999999999999999999999999 7999999999998884 788899999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+|||.-++.. ++.+. |..-|..++|+.+ .++|++|+.+..+||||++..+.+
T Consensus 84 kvw~a~tgde----------lhsf~-hkhivk~~af~~d-s~~lltgg~ekllrvfdln~p~Ap---------------- 135 (334)
T KOG0278|consen 84 KVWDAVTGDE----------LHSFE-HKHIVKAVAFSQD-SNYLLTGGQEKLLRVFDLNRPKAP---------------- 135 (334)
T ss_pred hhhhhhhhhh----------hhhhh-hhheeeeEEeccc-chhhhccchHHHhhhhhccCCCCC----------------
Confidence 9999987542 56665 8899999999995 488999999999999999988743
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
.....+|...|..+-|... .+.|++.+.|++||+||.+++..++++.. .
T Consensus 136 --------p~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------~ 184 (334)
T KOG0278|consen 136 --------PKEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------N 184 (334)
T ss_pred --------chhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------------C
Confidence 2334567778999999887 67888889999999999999987766532 1
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|+++.++++|++|.++ ..+.|.+||..+
T Consensus 185 s~VtSlEvs~dG~ilTia-~gssV~Fwdaks 214 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIA-YGSSVKFWDAKS 214 (334)
T ss_pred CCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence 259999999999966655 556899999887
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-30 Score=236.84 Aligned_cols=215 Identities=22% Similarity=0.364 Sum_probs=172.6
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG- 84 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~- 84 (732)
++++++.+.++.-...|+++.|+++|.+|++++.|.+++|||..++++++.+ ..++-.|..++|.... ..++.++.
T Consensus 1 l~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~~--~~~i~sStk 77 (311)
T KOG1446|consen 1 LRSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHHS--NTVIHSSTK 77 (311)
T ss_pred CcccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecCC--ceEEEccCC
Confidence 3577888888888999999999999999999999999999999999999999 6777788999998774 56666665
Q ss_pred -CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 85 -DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 85 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
|.+|+.-++.+. +.++.+.||...|++|..+|-+ ..+++++.|++|++||++..+.....
T Consensus 78 ~d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l-------- 138 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL-------- 138 (311)
T ss_pred CCCceEEEEeecC----------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE--------
Confidence 889999999864 4589999999999999999955 89999999999999999977643111
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC--CCcccccCCCCCCcccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP--PLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
. ...-..++|+|. |-++|++.....|++||+++.. +..++ ...
T Consensus 139 ----~---------------~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkgPF~tf-------------~i~-- 183 (311)
T KOG1446|consen 139 ----N---------------LSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDKGPFTTF-------------SIT-- 183 (311)
T ss_pred ----e---------------cCCCcceeECCC-CcEEEEecCCCeEEEEEecccCCCCceeE-------------ccC--
Confidence 0 012235789998 7788888877799999999753 22221 111
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.+. ....+.+.|+|||++|+.++..+.+++.|.-+|
T Consensus 184 --~~~-~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 184 --DND-EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred --CCC-ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 011 124899999999999999999999999987663
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-32 Score=277.71 Aligned_cols=210 Identities=22% Similarity=0.340 Sum_probs=191.4
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
..++|.||.++|..+.|+|+.++|++++.|++||+|.+.+..++..+ ++|..+|.++.|+|. |-+++|++.|++.++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tArL 519 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTARL 519 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCceeee
Confidence 45679999999999999999999999999999999999999999999 799999999999999 699999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
|..... .|++.+.+|...|.|+.|+| +.+++++||.|.+||+||+.++..
T Consensus 520 Ws~d~~----------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~------------------- 569 (707)
T KOG0263|consen 520 WSTDHN----------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS------------------- 569 (707)
T ss_pred eecccC----------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-------------------
Confidence 998862 56899999999999999999 569999999999999999999872
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
+....+|..+|.+++|+|+ |++|++|+.||.|.+||+.+++++..+ .+|.+ .
T Consensus 570 ------VRiF~GH~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht~-t 621 (707)
T KOG0263|consen 570 ------VRIFTGHKGPVTALAFSPC-GRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHTG-T 621 (707)
T ss_pred ------EEEecCCCCceEEEEEcCC-CceEeecccCCcEEEEEcCCCcchhhh--------------------hcccC-c
Confidence 2223568889999999998 899999999999999999998877666 67755 6
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|.++.|+.+|..|++|+.|.+|++||+....
T Consensus 622 i~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 622 IYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999999999999998743
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=5.7e-31 Score=261.27 Aligned_cols=213 Identities=15% Similarity=0.306 Sum_probs=187.6
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+++..+.+..|++.|.++.|+|...+++++-.+|.|.|||.++...++.+ .-..-+|.+..|.+.. +.+++|+.|..
T Consensus 2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaRk--nWiv~GsDD~~ 78 (794)
T KOG0276|consen 2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIARK--NWIVTGSDDMQ 78 (794)
T ss_pred cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeecc--ceEEEecCCce
Confidence 45566777889999999999999999999999999999999999999999 6778899999999984 89999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|+||+..+. +.++.+..|.+-|++|+.+|.. .+++|+|.|-.|++||.+..-.+
T Consensus 79 IrVfnynt~----------ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~--------------- 132 (794)
T KOG0276|consen 79 IRVFNYNTG----------EKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC--------------- 132 (794)
T ss_pred EEEEecccc----------eeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---------------
Confidence 999999985 3389999999999999999966 78889999999999999876433
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.....+|...|.+++|+|.+.+.+++++-|++|+||.+.+..+..++ .||.
T Consensus 133 ---------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHe 183 (794)
T KOG0276|consen 133 ---------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHE 183 (794)
T ss_pred ---------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------eccc
Confidence 23345677799999999999999999999999999999877655554 6787
Q ss_pred cccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004739 248 SLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 248 ~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~ 279 (732)
.+ |+++.+-+.| .+|++|+.|.+|+|||.++
T Consensus 184 kG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 184 KG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cC-cceEEeccCCCcceEEecCCCceEEEeecch
Confidence 74 9999999855 6999999999999999988
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-30 Score=267.76 Aligned_cols=224 Identities=18% Similarity=0.267 Sum_probs=177.6
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
++--+..|..++|+|...+++++-..|.|++||.+-+.++.+| ..|+++|..+.|+|. +.+++||+.|.+|+||+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEecc
Confidence 3445778999999999999999999999999999999999999 799999999999999 4899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
+. .++.++.||-+-|..+.|++.- ..|+++|.|.+|+||+..+++
T Consensus 82 ~r----------rclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~------------------------ 126 (1202)
T KOG0292|consen 82 TR----------RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRK------------------------ 126 (1202)
T ss_pred cc----------eehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCc------------------------
Confidence 63 4589999999999999999955 789999999999999999887
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc----CCCCCCc-ccccc----ccccccCC
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----RMSPPPC-VNYFC----PMHLSEHG 245 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~-~~~~~----~~~~~~~~ 245 (732)
.+....+|...|.|..|+|. ..++++++-|.+|||||+...+....-+. .+...+- ...|. .....-.|
T Consensus 127 -~iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 127 -CIAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred -eEEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 34445678889999999998 67999999999999999976543322211 0000000 00000 00011145
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|.. .|+-++|+|.-..+++|+.|..|++|.+..
T Consensus 205 HDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 205 HDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred ccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence 655 388888888888888888888888887665
No 46
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=260.19 Aligned_cols=416 Identities=17% Similarity=0.176 Sum_probs=303.5
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+++.+.+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+..|. ...+.|+.++|..|+ ...+++|+..
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrtDG-~p~las~~~~ 266 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRTDG-NPLLASGRSN 266 (910)
T ss_pred eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEeccCC-CeeEEeccCC
Confidence 46788999999999999999999988899999999999999999999999993 235999999999996 3678888888
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
|.+.+||++..... ......|.+.|....|.| +...+++++.|+.+++|=..++.-
T Consensus 267 G~m~~wDLe~kkl~---------~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg-------------- 322 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLI---------NVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDG-------------- 322 (910)
T ss_pred ceEEEEEcCCCeee---------eeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCC--------------
Confidence 99999999964321 233447889999999999 668999999999999997766542
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc----------------CCCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK----------------RMSP 229 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~----------------~~~~ 229 (732)
..+.+..-.+|..+..++.|...++..+.+++.|++++.+++.....-+.+.. ....
T Consensus 323 -------~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 323 -------VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred -------cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 22344455678889999999866699999999999999998754321111110 0000
Q ss_pred CCcc-------------------------cccc------cccccc---CCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004739 230 PPCV-------------------------NYFC------PMHLSE---HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 275 (732)
Q Consensus 230 ~~~~-------------------------~~~~------~~~~~~---~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw 275 (732)
|+.. .++. ..+... ....+..+++++.++.|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 0000 0000 000000 00122358999999999999999999999999
Q ss_pred ECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhH
Q 004739 276 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEA 355 (732)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 355 (732)
+++++-....+. ....|..++..++.-.-
T Consensus 476 NmQSGi~r~sf~-------------~~~ah~~~V~gla~D~~-------------------------------------- 504 (910)
T KOG1539|consen 476 NMQSGIHRKSFG-------------DSPAHKGEVTGLAVDGT-------------------------------------- 504 (910)
T ss_pred EcccCeeecccc-------------cCccccCceeEEEecCC--------------------------------------
Confidence 999953211100 00001111111000000
Q ss_pred hHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHH
Q 004739 356 CNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIA 435 (732)
Q Consensus 356 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (732)
T Consensus 505 -------------------------------------------------------------------------------- 504 (910)
T KOG1539|consen 505 -------------------------------------------------------------------------------- 504 (910)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhh
Q 004739 436 AQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEE 515 (732)
Q Consensus 436 ~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~ 515 (732)
+
T Consensus 505 ------------------n------------------------------------------------------------- 505 (910)
T KOG1539|consen 505 ------------------N------------------------------------------------------------- 505 (910)
T ss_pred ------------------C-------------------------------------------------------------
Confidence 1
Q ss_pred hhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeecccc
Q 004739 516 VEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVG 595 (732)
Q Consensus 516 ~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~ 595 (732)
+.+++++.++.++.|++..+....--.-...+..+..+.....+|.+..+....+++..+ .+..+.|.||.+.+
T Consensus 506 -----~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-~kvvR~f~gh~nri 579 (910)
T KOG1539|consen 506 -----RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-RKVVREFWGHGNRI 579 (910)
T ss_pred -----ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh-hhhhHHhhccccce
Confidence 344555555566666665544443334456677888888889999997666777788877 78999999999997
Q ss_pred ceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCC-CcEEEEcCCCCCCcc
Q 004739 596 TDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGID-NTIKIWTPSASVPSI 674 (732)
Q Consensus 596 ~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D-~~i~vW~~~~~~~~~ 674 (732)
+++. |||||++|++++.|++|++||+.|+.++-.+.- ..+.+++.|||+|.+|||+..| .-|.+|.-++.....
T Consensus 580 td~~----FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 580 TDMT----FSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSV 654 (910)
T ss_pred eeeE----eCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEEchhHheec
Confidence 7666 699999999999999999999999999998874 7889999999999999999999 569999877655443
Q ss_pred c
Q 004739 675 V 675 (732)
Q Consensus 675 ~ 675 (732)
.
T Consensus 655 s 655 (910)
T KOG1539|consen 655 S 655 (910)
T ss_pred c
Confidence 3
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-30 Score=227.78 Aligned_cols=203 Identities=17% Similarity=0.252 Sum_probs=161.4
Q ss_pred ceeEEEEcC--CCCE-EEEE-----eCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 21 CVNAISWNS--KGSL-LISG-----SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 21 ~V~~l~~s~--dg~~-lasg-----~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
.=+++.||| ++++ +|++ ...|++.|-++...+-+..+. ..-.+.+..++|+++. .+.+++++.||++++|
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLF 88 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEe
Confidence 345788998 3433 2232 236899999987555544441 1345789999999987 5889999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
|+..+. .|++.++.|...|.++.|++.....+++++.|++|++|+...++
T Consensus 89 d~~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------------- 138 (311)
T KOG0277|consen 89 DLTMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------------- 138 (311)
T ss_pred ccCCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------------------
Confidence 976543 56899999999999999999888889999999999999988776
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
.+.+..+|..-|+..+|+|..++++++++.|+++++||++.......+ ..|.. .|
T Consensus 139 ----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i--------------------~ah~~-Ei 193 (311)
T KOG0277|consen 139 ----SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI--------------------EAHNS-EI 193 (311)
T ss_pred ----ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE--------------------Eeccc-ee
Confidence 344466788899999999999999999999999999999864322112 33443 59
Q ss_pred EEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004739 252 THVTFSP-NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 252 ~~l~~sp-~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.++.|+. +...|++|+.|+.|++||+++
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhh
Confidence 9999998 667889999999999999988
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-30 Score=236.77 Aligned_cols=205 Identities=23% Similarity=0.466 Sum_probs=172.4
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-------cCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-------~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
|.+.-+-|..|||||++|++|+.||.|-|||..+|+..+.+. --+..+|.|+.|+.++ .++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs--EMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS--EMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH--HHhhccCcCCcEE
Confidence 456778899999999999999999999999999998655441 2478999999999996 8999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
||.++++. |++.+. .|+..|+++.|+.++ ..+++++.|.++++.-+.+++
T Consensus 289 vWri~tG~----------ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK------------------ 339 (508)
T KOG0275|consen 289 VWRIETGQ----------CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGK------------------ 339 (508)
T ss_pred EEEEecch----------HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccch------------------
Confidence 99999853 356665 899999999999966 667799999999999999887
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
.+....+|...|+...|.++ |+.+++++.||+|++|+..+.+ |+.+|.+.. .+
T Consensus 340 -------~LKEfrGHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d 392 (508)
T KOG0275|consen 340 -------CLKEFRGHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD 392 (508)
T ss_pred -------hHHHhcCccccccceEEcCC-CCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence 45666788999999999999 8999999999999999999874 455554332 23
Q ss_pred ccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004739 249 LHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|+++-.-| +...++++...++|+|.+++.
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 3688888877 456788888899999998876
No 49
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2e-29 Score=235.32 Aligned_cols=168 Identities=17% Similarity=0.266 Sum_probs=140.9
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
.+..| ..|+..|++++.+|+ .++++||+.|..-.+|++.++. ....+.+|++.|+++.|+.+ +.+|
T Consensus 56 S~~tF-~~H~~svFavsl~P~--~~l~aTGGgDD~AflW~~~~ge----------~~~eltgHKDSVt~~~Fshd-gtlL 121 (399)
T KOG0296|consen 56 SLVTF-DKHTDSVFAVSLHPN--NNLVATGGGDDLAFLWDISTGE----------FAGELTGHKDSVTCCSFSHD-GTLL 121 (399)
T ss_pred ceeeh-hhcCCceEEEEeCCC--CceEEecCCCceEEEEEccCCc----------ceeEecCCCCceEEEEEccC-ceEE
Confidence 45566 799999999999997 4899999999999999999753 36889999999999999995 4999
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
|||..+|.|+||+..++... +. .......+.-+.|+|- +..|++|+.||.+.+|
T Consensus 122 ATGdmsG~v~v~~~stg~~~--------------~~-----------~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQ--------------WK-----------LDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMW 175 (399)
T ss_pred EecCCCccEEEEEcccCceE--------------EE-----------eecccCceEEEEeccc-ccEEEeecCCCcEEEE
Confidence 99999999999999988632 10 0012236778899997 8899999999999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+.+....+.+ .||.. ++++=.|.|+|+.++++..||+|++||.+++.
T Consensus 176 ~ip~~~~~kv~--------------------~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 176 QIPSQALCKVM--------------------SGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ECCCcceeeEe--------------------cCCCC-CcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 99986443333 66655 69999999999999999999999999999963
No 50
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.7e-30 Score=258.04 Aligned_cols=560 Identities=15% Similarity=0.112 Sum_probs=350.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcCCCCCC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGR 99 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~--~dg~i~vwd~~~~~~~ 99 (732)
-..++..|-..++|-- ....|.+||++..++-+.+ ..|..+++|++|+++ |+++++|- ....++||++....
T Consensus 40 ~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlv-nssRk~~t~vAfS~~--GryvatGEcG~~pa~kVw~la~h~-- 113 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLV-NSSRKPLTCVAFSQN--GRYVATGECGRTPASKVWSLAFHG-- 113 (1080)
T ss_pred CCcccccccccceeec-cCcEEEEEcccccchhhee-cccCcceeEEEEcCC--CcEEEecccCCCccceeeeecccc--
Confidence 3445555544444421 2357889999888777766 688889999999999 69999984 56779999998642
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.+..+..|+-.|++++|+| +++++++.+. |-.|.+||.+.....
T Consensus 114 --------vVAEfvdHKY~vtcvaFsp-~~kyvvSVGsQHDMIVnv~dWr~N~~~------------------------- 159 (1080)
T KOG1408|consen 114 --------VVAEFVDHKYNVTCVAFSP-GNKYVVSVGSQHDMIVNVNDWRVNSSG------------------------- 159 (1080)
T ss_pred --------chhhhhhccccceeeeecC-CCcEEEeeccccceEEEhhhhhhcccc-------------------------
Confidence 3788999999999999999 5588887664 456788988765421
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc-cccCC--C-----------CCCccc------ccc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRM--S-----------PPPCVN------YFC 237 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~--~-----------~~~~~~------~~~ 237 (732)
....-...|..++|+.+ +.++++.+ +..|++|.++..+..+. ++... . ...|-. .|.
T Consensus 160 -asnkiss~Vsav~fsEd-gSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa 236 (1080)
T KOG1408|consen 160 -ASNKISSVVSAVAFSED-GSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA 236 (1080)
T ss_pred -cccccceeEEEEEEccC-Cceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEE
Confidence 01112337889999999 77888877 57899999987652211 00000 0 000000 000
Q ss_pred c---cccccC----------CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee----eecCCCCceeeecc
Q 004739 238 P---MHLSEH----------GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR----YTVGDASKIMSFTP 300 (732)
Q Consensus 238 ~---~~~~~~----------~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~ 300 (732)
. .++.+. .-.....+|++. ..++|++|+.+|.|++|+..+......+ ....+..+.....|
T Consensus 237 it~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~ 314 (1080)
T KOG1408|consen 237 ITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEP 314 (1080)
T ss_pred Eecccceeeechhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccc
Confidence 0 000000 000001233333 5679999999999999998774322111 11111111111122
Q ss_pred CCCCccCC----CCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchh-----hhhHhHHHHhcccCCC----
Q 004739 301 TLNGLELQ----PPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYY-----GIEACNEVLEGHLSGI---- 367 (732)
Q Consensus 301 ~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v---- 367 (732)
.+.+.... .....|.+....+. ..-+|+.+.+ |++..-+.... ...+|.-.+...+-.|
T Consensus 315 ~~s~~~~a~fPD~IA~~Fdet~~kls---cVYndhSlYv-----WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~ 386 (1080)
T KOG1408|consen 315 KNSESSPAIFPDAIACQFDETTDKLS---CVYNDHSLYV-----WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT 386 (1080)
T ss_pred cccccCcccCCceeEEEecCCCceEE---EEEcCceEEE-----EeccccccccceeeeeeccceeeeeccccccccCcc
Confidence 21111111 11234444444554 5566677777 76653221100 0000111111111011
Q ss_pred CCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhH
Q 004739 368 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 447 (732)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 447 (732)
..-....+|.+.+.|+++|+|+.+. |. ....+
T Consensus 387 ~aclp~~cF~TCSsD~TIRlW~l~~------ct----------------------------------nn~vy-------- 418 (1080)
T KOG1408|consen 387 AACLPRGCFTTCSSDGTIRLWDLAF------CT----------------------------------NNQVY-------- 418 (1080)
T ss_pred cccCCccceeEecCCCcEEEeeccc------cc----------------------------------cccee--------
Confidence 1111223788888888888888541 00 00000
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCC-CCCCCCcc--cccccccccccc-CCCCCCCCCCCCCCCCChhhhhhhcccCC
Q 004739 448 EKVENIKKHIAAAETEKNNKANDGGAR-SEPRTGRV--LSLSDIIYRSEA-NSDASQDGPRSEREDSDYDEEVEVDFHTS 523 (732)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~~~g~~--~~~~~~~~~~~~-~~~~s~d~~~~~~~~~~~~~~~~~~~~~~ 523 (732)
.+.+.++..-+.+-.-+..+. .+...+-. -..+++..+.+. +++.||+| +-+
T Consensus 419 ------rRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g------------------qhL 474 (1080)
T KOG1408|consen 419 ------RRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG------------------QHL 474 (1080)
T ss_pred ------ecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc------------------cee
Confidence 112222221111111000000 00000000 001122233333 78899999 999
Q ss_pred CCCCCCcccccccc-cCCcceeeccCCCCccccccCCC---CCCCCCCCCCCCCCccccccccccceeEeeeccccceee
Q 004739 524 VPGDEGRDVEANFL-HGSLNVRIHRRGDSARETVDANG---SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK 599 (732)
Q Consensus 524 ~s~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~ 599 (732)
++|+..++++++.+ +-+....+..|+..|.|+.||.- .++||+++-+.-..|++....+.+++++.+|...+++|+
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEE
Confidence 99999999999998 45677788999999999999963 468999965555566999888999999999999988776
Q ss_pred eccc---------------------------------------------ccCCCCEEEEecCCCcEEEEEcCcccEEEEE
Q 004739 600 QASF---------------------------------------------LGQRGDYIASGSDDGRWFIWEKQTGRLIKML 634 (732)
Q Consensus 600 ~~~f---------------------------------------------~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l 634 (732)
-++- ..|..+++++++.|..|+|||+++|+.++.|
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF 634 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence 4431 1166779999999999999999999999999
Q ss_pred ec---CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----hhHHHHHHHHHHHhhhcccccc
Q 004739 635 LG---DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----ADVLEAMESNQRKLSRNREHSL 706 (732)
Q Consensus 635 ~g---H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 706 (732)
+| |.+....|...|.|.|||+...|.++.++|..+++++.+.-||+..|+ .|.+-+++.+-|.-+-+|..+.
T Consensus 635 Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 87 778899999999999999999999999999999999999999999885 4777777777777777776654
No 51
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.6e-30 Score=261.06 Aligned_cols=483 Identities=14% Similarity=0.131 Sum_probs=330.7
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeE---EEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLL---HSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~---~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
...++.+|...|.-+. +=|.+++++..++.+.||+.... +.+ ..+.+.-...|+++ ++|...=+.++.|+..|
T Consensus 106 i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G 182 (910)
T KOG1539|consen 106 IRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQG 182 (910)
T ss_pred EEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCC
Confidence 3445666776666654 34778999999999999998874 111 12222222338777 56654346789999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.+++|+++++ +.+.+++++...|+++.-+| --..++.|..+|+|.+++++..+.+
T Consensus 183 ~lql~Nvrt~----------K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil-------------- 237 (910)
T KOG1539|consen 183 RLQLWNVRTG----------KVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKIL-------------- 237 (910)
T ss_pred cEEEEEeccC----------cEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEE--------------
Confidence 9999999985 33899999999999999999 5589999999999999999988732
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
...+ ...+.|++++|..||...+++|+..|.+.+||+...+.+.... ..|
T Consensus 238 ~sFk-----------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-------------------nah 287 (910)
T KOG1539|consen 238 MSFK-----------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-------------------NAH 287 (910)
T ss_pred EEEE-----------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-------------------ccc
Confidence 1111 1136899999999988889999999999999999876654431 234
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccC-CCcccccccc
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL-QTNIRVRGEV 325 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 325 (732)
.+ .|+.+.|.|....|++++.|+.+++|=..++... ++. .....||..++.++.|. .+|..+.
T Consensus 288 ~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~---------pR~---LR~R~GHs~Pp~~irfy~~~g~~il--- 351 (910)
T KOG1539|consen 288 YG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV---------PRL---LRSRGGHSAPPSCIRFYGSQGHFIL--- 351 (910)
T ss_pred cC-CcccceecCCCceEeeccCCCceeEEEeeCCCCc---------chh---eeeccCCCCCchheeeeccCcEEEE---
Confidence 44 4899999999999999999999988866653321 111 12456888899999988 6888888
Q ss_pred ccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhc-ccC------CC-CCccc--hhhhhhHHHHhhccccccchhhh
Q 004739 326 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEG-HLS------GI-GPMLR--HECLCIRAALLLKRKWKNDAQMA 395 (732)
Q Consensus 326 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~v-~~~~~--~~~~~~~~~~~~~~~w~~~~~~~ 395 (732)
+++.|++.+...... +..++.+.- |.. .+ +++.. .+++.-.......+.|+
T Consensus 352 sa~~Drt~r~fs~~~-------------e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~------ 412 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVIS-------------ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD------ 412 (910)
T ss_pred ecccCcchhhhhhhH-------------HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc------
Confidence 999999887622211 111111110 000 00 00000 00000000001111111
Q ss_pred HHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 004739 396 IRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARS 475 (732)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 475 (732)
+.++..-.+.....|+..+.
T Consensus 413 -----------------------------------------------------------Nv~~~h~~~~~~~tW~~~n~- 432 (910)
T KOG1539|consen 413 -----------------------------------------------------------NVITAHKGKRSAYTWNFRNK- 432 (910)
T ss_pred -----------------------------------------------------------ceeEEecCcceEEEEeccCc-
Confidence 11122222334445552221
Q ss_pred CCCCCcccccccccccccc----CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCccccccccc-CCcceee---cc
Q 004739 476 EPRTGRVLSLSDIIYRSEA----NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLH-GSLNVRI---HR 547 (732)
Q Consensus 476 ~~~~g~~~~~~~~~~~~~~----~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~-~~~~~~~---~~ 547 (732)
..|+.. +.+..+.... +++.++-| .+..-|...+.|.++++- |-...++ +.
T Consensus 433 --~~G~~~-L~~~~~~~~~~~~~av~vs~CG------------------NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 433 --TSGRHV-LDPKRFKKDDINATAVCVSFCG------------------NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred --ccccEE-ecCccccccCcceEEEEEeccC------------------ceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 112111 1111111111 56667777 677888888999999984 4444455 68
Q ss_pred CCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEe-eeccccceeeecccccCCCCEEEEecCCCcEEEEEcC
Q 004739 548 RGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYV-GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ 626 (732)
Q Consensus 548 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~ 626 (732)
|..+|+.++...-++.+++++.++....|+... ..+++.+. |+. ++.+. .+-....+|.+..|-.|+++|+.
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~--~~~iv----~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSS--ITGIV----YHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCC--cceee----eeehhhhhhhhcCceeEEEEEch
Confidence 999999999999999999998777777798766 34444443 332 22233 36677889999999999999999
Q ss_pred cccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004739 627 TGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI 674 (732)
Q Consensus 627 tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~ 674 (732)
|-+.++.|.||++.|++++|||||++|+|++.|++||+||+.++..+-
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 999999999999999999999999999999999999999999998873
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.3e-29 Score=248.05 Aligned_cols=222 Identities=17% Similarity=0.260 Sum_probs=194.6
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+...++.+.--.-||++..|-+-.+++++|+.|..|||++..+++.++.| ..|.+-|.|++.+|.. .+++|+|.|-+
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~--P~vLtsSDDm~ 120 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTL--PYVLTSSDDMT 120 (794)
T ss_pred cceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCC--CeEEecCCccE
Confidence 44566777777889999999999999999999999999999999999999 8999999999999994 89999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|++||.+.. +.+.+++.||..-|.+++|+|.+++.|++++-|++|++|.+.++.
T Consensus 121 iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----------------- 174 (794)
T KOG0276|consen 121 IKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----------------- 174 (794)
T ss_pred EEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------
Confidence 999999853 356899999999999999999999999999999999999998765
Q ss_pred eccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
+..+..+|...|+++.+-+-+ ..+|++|+.|.+|+|||.++.. |++++ .||
T Consensus 175 --------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-------------CV~TL-------eGH 226 (794)
T KOG0276|consen 175 --------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-------------CVQTL-------EGH 226 (794)
T ss_pred --------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-------------HHHHh-------hcc
Confidence 234455788899999998752 3499999999999999999874 55554 788
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 287 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 287 (732)
.. .|..+.|+|.-.++++|+.||+|+||+-.+.+....+.
T Consensus 227 t~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 227 TN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred cc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence 77 59999999999999999999999999998866544443
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=229.41 Aligned_cols=215 Identities=21% Similarity=0.334 Sum_probs=177.0
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CeeEEEEccCCCcCeEEEEEecCC
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPET 74 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~------------------~~~~~~~~~~h~~~V~~~~~s~~~ 74 (732)
..+..|+.++++.+|+|||.++|||+.|..|+|.|++. .-.++++ ..|...|+++.|+|.+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchh
Confidence 45778999999999999999999999999999999862 1245555 6899999999999995
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004739 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 154 (732)
Q Consensus 75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 154 (732)
..|++|+.|++|++||+.....+. ..+.+ ....+|.+|.|+| .+.+++.|.....+++||+.+.+....
T Consensus 185 --~ILiS~srD~tvKlFDfsK~saKr-------A~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 185 --TILISGSRDNTVKLFDFSKTSAKR-------AFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred --heEEeccCCCeEEEEecccHHHHH-------HHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeee
Confidence 899999999999999998643221 12223 3467899999999 558999999999999999998773211
Q ss_pred CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004739 155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
......|...|+++.+++. +++.++++.||.|++||--+. +|++
T Consensus 254 ----------------------anPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~-------------rCv~ 297 (430)
T KOG0640|consen 254 ----------------------ANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSN-------------RCVR 297 (430)
T ss_pred ----------------------cCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccH-------------HHHH
Confidence 1122357789999999999 889999999999999998766 5555
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
++. ..|.+..|.+..|..+|+++++++.|..|++|++.+++
T Consensus 298 t~~------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 298 TIG------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHH------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 554 44666679999999999999999999999999999854
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=220.20 Aligned_cols=206 Identities=19% Similarity=0.340 Sum_probs=167.1
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE-ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~-~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
+.+++|...|.+++|+.+|..|++|+.|++++||++...+.+... ..+|.+.|-.++|+|.. .+++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 778899999999999999999999999999999999877554432 25899999999999987 5899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
|++.. ++.......... .-+.|+|++ .+++.++.|..|...|.++.+..
T Consensus 93 d~r~~----------k~~~~i~~~~en-i~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~------------------- 141 (313)
T KOG1407|consen 93 DIRSG----------KCTARIETKGEN-INITWSPDG-EYIAVGNKDDRITFIDARTYKIV------------------- 141 (313)
T ss_pred EeccC----------cEEEEeeccCcc-eEEEEcCCC-CEEEEecCcccEEEEEeccccee-------------------
Confidence 99974 234554433333 457899955 88889999999999999987632
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
........+.-+.|+.+ .++++.....|+|.|......+++..+ ..|.. ..
T Consensus 142 -------~~~~~~~e~ne~~w~~~-nd~Fflt~GlG~v~ILsypsLkpv~si--------------------~AH~s-nC 192 (313)
T KOG1407|consen 142 -------NEEQFKFEVNEISWNNS-NDLFFLTNGLGCVEILSYPSLKPVQSI--------------------KAHPS-NC 192 (313)
T ss_pred -------ehhcccceeeeeeecCC-CCEEEEecCCceEEEEecccccccccc--------------------ccCCc-ce
Confidence 01122346778888866 567777677899999999988877766 55654 48
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.++.|+|+|++|++|+.|..+.+||++.
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhH
Confidence 8999999999999999999999999877
No 55
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=6.7e-31 Score=248.38 Aligned_cols=247 Identities=18% Similarity=0.244 Sum_probs=207.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.....++.|.++|+++.|+++|.+++||+.+|.|++|+.. ...++.+...|...|.+++|+|+ +..+++|+.||+|+
T Consensus 129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ik 205 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIK 205 (464)
T ss_pred eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEE
Confidence 3445678899999999999999999999999999999965 44455553456699999999997 58999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
|||...... -..+.+|.-.|.++.|+|.. .+|+++|+|..|++||.+++.
T Consensus 206 iWdf~~~ke----------e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~------------------- 255 (464)
T KOG0284|consen 206 IWDFRMPKE----------ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS------------------- 255 (464)
T ss_pred EEeccCCch----------hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc-------------------
Confidence 999986533 45679999999999999955 899999999999999999987
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
.+.....|...|..+.|+|+ +++|++++.|..++++|+++.+.+..+ .+|..
T Consensus 256 ------cl~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~--------------------r~Hkk- 307 (464)
T KOG0284|consen 256 ------CLATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTY--------------------RGHKK- 307 (464)
T ss_pred ------hhhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHh--------------------hcchh-
Confidence 34566678889999999999 699999999999999999988777655 67777
Q ss_pred cEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccC
Q 004739 250 HLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 328 (732)
Q Consensus 250 ~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 328 (732)
.+++++|+| ...+|.+|+.||.|..|.+...+.... .-..|+..+-++++.|-|..++ +++
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~---------------i~~AHd~~iwsl~~hPlGhil~---tgs 369 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE---------------IPPAHDGEIWSLAYHPLGHILA---TGS 369 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccccccC---------------CCcccccceeeeeccccceeEe---ecC
Confidence 499999999 556888899999999999884221110 2345666777888888899999 999
Q ss_pred cchhhHH
Q 004739 329 LGKCRML 335 (732)
Q Consensus 329 ~d~~~~l 335 (732)
.|++++.
T Consensus 370 nd~t~rf 376 (464)
T KOG0284|consen 370 NDRTVRF 376 (464)
T ss_pred CCcceee
Confidence 9999999
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=227.05 Aligned_cols=162 Identities=22% Similarity=0.332 Sum_probs=135.1
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|++.|+.+.|+|+ |.+|+||+.|..|.+|++.. .+ +....+++|++.|..+.|.+++ +.+++++.|
T Consensus 44 ~gh~geI~~~~F~P~--gs~~aSgG~Dr~I~LWnv~g---dc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtD 111 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPD--GSCFASGGSDRAIVLWNVYG---DC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTD 111 (338)
T ss_pred CCCcceEEEEEECCC--CCeEeecCCcceEEEEeccc---cc------cceeeeccccceeEeeeeccCC-CEEEEecCC
Confidence 699999999999998 69999999999999999763 22 3367788999999999999955 889999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
.+|+.||+++++. ...+..|..-|+++.-+.-+..++.+|+.|+++++||+++..
T Consensus 112 k~v~~wD~~tG~~-------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 112 KTVRGWDAETGKR-------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ceEEEEeccccee-------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 9999999999983 233455666777777554556688889999999999999887
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.++++. . ..+++++.|..++..+.+|+-|+.|++||++.
T Consensus 167 ~~~t~~--------------------~--kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 167 AIKTFE--------------------N--KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hhhccc--------------------c--ceeEEEEEecccccceeeccccCceeeecccc
Confidence 665542 1 12599999999999999999999999999876
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=234.48 Aligned_cols=162 Identities=20% Similarity=0.315 Sum_probs=145.0
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|.+.|.|+++.|. +..|++|+.|++|+|||+.+++. ..++.||...|..+++++-. .++++++.|
T Consensus 148 ~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg~L----------kltltGhi~~vr~vavS~rH-pYlFs~ged 214 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATGQL----------KLTLTGHIETVRGVAVSKRH-PYLFSAGED 214 (460)
T ss_pred hhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccCeE----------EEeecchhheeeeeeecccC-ceEEEecCC
Confidence 799999999999998 48999999999999999998542 57888999999999999965 788899999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
+.|+.||++..+ .+....+|...|.+++..|. -..|++|+.|.++||||+++..
T Consensus 215 k~VKCwDLe~nk-------------------------vIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 215 KQVKCWDLEYNK-------------------------VIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred CeeEEEechhhh-------------------------hHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccc
Confidence 999999999877 34455678889999999998 6799999999999999999988
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
++..+ .||.. +|.++.+.|....+++|+.|++|++||+..+
T Consensus 269 ~V~~l--------------------~GH~~-~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 269 SVHVL--------------------SGHTN-PVASVMCQPTDPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred eEEEe--------------------cCCCC-cceeEEeecCCCceEEecCCceEEEeeeccC
Confidence 77666 77877 6999999998888999999999999999874
No 58
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=5.7e-30 Score=257.57 Aligned_cols=543 Identities=15% Similarity=0.129 Sum_probs=331.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC-CCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~-g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
...|.|.+ .+|.|. ...|.+||..+......+ .+|..+|+|+.|.|.+. ..++++|+.|++|.+|.++....
T Consensus 19 v~sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l-~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~---- 91 (764)
T KOG1063|consen 19 VSSWGPGG-LVAFGA-GPAIAVADPEKILIVTTL-DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL---- 91 (764)
T ss_pred cccccccc-eEEecC-CceEEEeCcccceeEEec-cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe----
Confidence 34554443 455554 578999998877666666 89999999999999841 12799999999999999983221
Q ss_pred CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC-------------CCCC---C---------
Q 004739 103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC-------------PPAG---S--------- 157 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~---~--------- 157 (732)
.++..+.+|...+.++.- ........+.|+.+.+||.+..+.. +... .
T Consensus 92 ----~~i~~~~g~~~~~~cv~a---~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~ 164 (764)
T KOG1063|consen 92 ----IKIYTIQGHCKECVCVVA---RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLAC 164 (764)
T ss_pred ----EEEEeecCcceeEEEEEe---eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEe
Confidence 346777777666665543 2233333378999999999655510 0000 0
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCC--CEEEEEeCCCeEEEEECCCCCCCcccccC----CCCC-
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP--HLLLVGGSDAFARLYDRRMLPPLTSCQKR----MSPP- 230 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~----~~~~- 230 (732)
+...+...++.-.......+....+|...|.+++|...++ .+|++++.|..||||.+.-.....+.... ..+.
T Consensus 165 Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~ 244 (764)
T KOG1063|consen 165 GGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL 244 (764)
T ss_pred cCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence 0111111222222334456677889999999999987643 47899999999999987644322211100 0000
Q ss_pred ---Cc---cccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCC
Q 004739 231 ---PC---VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG 304 (732)
Q Consensus 231 ---~~---~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (732)
.+ +++....+....||.+ +|+++.|+|.+..|++++.|.++.+|...+..-.-.- .+. ...+.+
T Consensus 245 ~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~--------~vR-lGe~gg 314 (764)
T KOG1063|consen 245 PVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD--------VVR-LGEVGG 314 (764)
T ss_pred ceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEE--------EEE-eecccc
Confidence 01 1111111122257887 8999999999999999999999999987763211100 000 001223
Q ss_pred ccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhh
Q 004739 305 LELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLL 384 (732)
Q Consensus 305 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 384 (732)
.........|+|++..+. +.+.-+..++ |.-+... .+.....+.||...
T Consensus 315 ~a~GF~g~lw~~n~~~ii---~~g~~Gg~hl-----Wkt~d~~-----~w~~~~~iSGH~~~------------------ 363 (764)
T KOG1063|consen 315 SAGGFWGGLWSPNSNVII---AHGRTGGFHL-----WKTKDKT-----FWTQEPVISGHVDG------------------ 363 (764)
T ss_pred cccceeeEEEcCCCCEEE---EecccCcEEE-----EeccCcc-----ceeecccccccccc------------------
Confidence 344455667888887776 7777777777 4411111 11223344555444
Q ss_pred ccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhc
Q 004739 385 KRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK 464 (732)
Q Consensus 385 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~ 464 (732)
|..+.+.|+ +.+|.+++.|.
T Consensus 364 -------------------------------------------------V~dv~W~ps-----------GeflLsvs~DQ 383 (764)
T KOG1063|consen 364 -------------------------------------------------VKDVDWDPS-----------GEFLLSVSLDQ 383 (764)
T ss_pred -------------------------------------------------ceeeeecCC-----------CCEEEEecccc
Confidence 344445554 45555666666
Q ss_pred cCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcc
Q 004739 465 NNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLN 542 (732)
Q Consensus 465 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~ 542 (732)
+-+++-.-. ....--.+....-|.+. ++++-+.. -.+++|.+++..+++...-...
T Consensus 384 TTRlFa~wg----~q~~wHEiaRPQiHGyDl~c~~~vn~~------------------~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 384 TTRLFARWG----RQQEWHEIARPQIHGYDLTCLSFVNED------------------LQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ceeeecccc----cccceeeecccccccccceeeehccCC------------------ceeeecccceeeeeecCcHHHH
Confidence 655543110 00000011111222222 34444422 5678888888888877622211
Q ss_pred ee--------e-----ccCCCCccccccCCCCCCC-CC--CCC----------CCCCCc--------cccccccccceeE
Q 004739 543 VR--------I-----HRRGDSARETVDANGSSGS-PS--SSS----------QNDRIP--------YQPETVIDMKQRY 588 (732)
Q Consensus 543 ~~--------~-----~~~~~~v~~~~~s~d~~~l-~~--~~~----------~~~~~~--------~~~~~~~~~~~~~ 588 (732)
.. + ......|..+..|++.-+. .+ ++. ..-... ....+.+..++++
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence 11 1 1112234444444443332 11 110 000000 1122235567889
Q ss_pred eeeccccceeeecccccCCCCEEEEecCC-----CcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEE
Q 004739 589 VGHCNVGTDIKQASFLGQRGDYIASGSDD-----GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIK 663 (732)
Q Consensus 589 ~gh~~~~~~i~~~~f~s~dg~~lasgs~D-----g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~ 663 (732)
+||...++++. .||+|+++||++.. .-|++|+..+...+..|.+|+-.|+.++|||||++|+|+|.|.++.
T Consensus 522 YGHGyEv~~l~----~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 522 YGHGYEVYALA----ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred ccCceeEEEEE----ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 99999988887 79999999999764 4589999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCc----cccCCCCCCC-----chhHHHHHHHHHHHhhhccccccc
Q 004739 664 IWTPSASVPS----IVSGGAAGPD-----TADVLEAMESNQRKLSRNREHSLS 707 (732)
Q Consensus 664 vW~~~~~~~~----~~~~gh~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 707 (732)
||........ ...+.|+--+ .++..++++.+.|+...+|.....
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9998544322 2345565333 456777999999999999988754
No 59
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.7e-30 Score=237.62 Aligned_cols=202 Identities=17% Similarity=0.243 Sum_probs=165.2
Q ss_pred ccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 11 QERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.+..|.||.++|.|++=+|.. ..+|+|+.||.|+|||+.+-.++.++ ..|.+.|..|++... .+++++.|.+|+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK 132 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVK 132 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEeccc----ceEEecCCccee
Confidence 456689999999999999977 78999999999999999999999999 899999999999874 689999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
.|.+.. .+++++.+ ...+..|.-+. ....++|||. .|.|||.+...++
T Consensus 133 ~wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv----------------- 180 (433)
T KOG0268|consen 133 QWKIDG-----------PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPV----------------- 180 (433)
T ss_pred eeeccC-----------Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCcc-----------------
Confidence 999874 23566654 45667777666 4488999986 5999998776532
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
....-....|.++.|+|.....|++|+.|+.|.+||++...++.+.... .
T Consensus 181 --------~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------------------m 230 (433)
T KOG0268|consen 181 --------SSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------------------M 230 (433)
T ss_pred --------ceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------------------c
Confidence 1122234478999999998889999999999999999999887765221 1
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.-+.++|+|++-.+++|+.|..++.||++.
T Consensus 231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 231 RTNTICWNPEAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred cccceecCccccceeeccccccceehhhhh
Confidence 256799999888889999999999998877
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=261.02 Aligned_cols=164 Identities=22% Similarity=0.366 Sum_probs=139.4
Q ss_pred CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC
Q 004739 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 139 (732)
Q Consensus 60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 139 (732)
.+...|.++.|+++ |..+++++.|+.+++|++..... .....+.+|...|.+++|+|++ .++++++.|+
T Consensus 157 ~~~~sv~~~~fs~~--g~~l~~~~~~~~i~~~~~~~~~~--------~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~ 225 (456)
T KOG0266|consen 157 HECPSVTCVDFSPD--GRALAAASSDGLIRIWKLEGIKS--------NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDK 225 (456)
T ss_pred cccCceEEEEEcCC--CCeEEEccCCCcEEEeecccccc--------hhhccccccccceeeeEECCCC-cEEEEecCCc
Confidence 34788999999999 58999999999999999964321 1256668999999999999955 8999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
+|++||+..... .+....+|...|++++|+|+ ++++++|+.|++|+|||+++++.
T Consensus 226 tiriwd~~~~~~------------------------~~~~l~gH~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 226 TLRIWDLKDDGR------------------------NLKTLKGHSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred eEEEeeccCCCe------------------------EEEEecCCCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeE
Confidence 999999944321 23445578889999999999 59999999999999999999766
Q ss_pred CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+..+ .+|.+ .|++++|++++++|++++.|+.|+|||+.++
T Consensus 281 ~~~l--------------------~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 281 VRKL--------------------KGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred EEee--------------------eccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 5554 66777 5999999999999999999999999999984
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.3e-30 Score=241.12 Aligned_cols=204 Identities=21% Similarity=0.298 Sum_probs=165.6
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++ .+..++|+.++|.++ +.++++++.|+.+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNL 243 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCce
Confidence 345678899999999999998899999999999999987666 55556 678889999999998 5899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
++|++.... ...++.+|++.|+++.|.... ..+++|+.|.+|+.||+.........+
T Consensus 244 r~Wnvd~~r----------~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l------------ 300 (459)
T KOG0288|consen 244 RLWNVDSLR----------LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL------------ 300 (459)
T ss_pred eeeeccchh----------hhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc------------
Confidence 999998632 368899999999999998744 448999999999999998855321111
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
....+..|..+ ...+++|-.|++||+||+++....... ..+
T Consensus 301 --------------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv--------------------~~g-- 341 (459)
T KOG0288|consen 301 --------------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSV--------------------PLG-- 341 (459)
T ss_pred --------------ccccccceEec---ceeeeecccccceEEEeccCCceeeEe--------------------ecC--
Confidence 01134445554 347889999999999999987655433 112
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+.|+++..+++|..|++.+.|.++.+.|+++
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 2599999999999999999999999999998
No 62
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=244.23 Aligned_cols=238 Identities=33% Similarity=0.562 Sum_probs=193.8
Q ss_pred hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
.+++++.+...|.+|.+.|+.+.|+..|..|++|+.|..|.+||+..++....+..+|...|...+|.|.+....|++++
T Consensus 127 ~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 127 LFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred HHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence 47888899999999999999999999999999999999999999999999999988999999999999987678899999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.||.+++=.+..... + +....+..|.++|..++.-|+.+..|.+++.|+.+.-.|++........
T Consensus 207 ~dgqvr~s~i~~t~~-~------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~-------- 271 (559)
T KOG1334|consen 207 RDGQVRVSEILETGY-V------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF-------- 271 (559)
T ss_pred ccCceeeeeeccccc-e------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--------
Confidence 999999987764322 1 2345667799999999999999999999999999999999887643111
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
. .+. .........++++.+|.+.+.+++|+.|-.+|+||.+....... ...+..|+|.++..
T Consensus 272 ---~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~-------n~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 272 ---V-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN-------NGVLDKFCPHHLVE 333 (559)
T ss_pred ---e-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc-------cchhhhcCCccccc
Confidence 0 000 01111346789999998888999999999999999987543211 13467788888866
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEE
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd 276 (732)
..+. .|++++|+.++.-|+++-.|-.|++|+
T Consensus 334 d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 334 DDPV--NITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred cCcc--cceeEEecCCccceeeeecccceEEec
Confidence 3333 499999999988899999999999993
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2e-28 Score=219.19 Aligned_cols=213 Identities=21% Similarity=0.352 Sum_probs=172.5
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
.|+||..+++.+.|+.+|.+|++++.|.++.||-..+|+.+.++ .+|+++|.|+..+-++ +++++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s--~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDS--KHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCc--ceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999999999999999 8999999999999986 89999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-----CCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
++++. +..++ -..+|..+.|++++ ++++.+.. .+.|.++|++...... ...+
T Consensus 82 ~tGk~----------la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~----~s~e------- 138 (327)
T KOG0643|consen 82 ETGKQ----------LATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDI----DSEE------- 138 (327)
T ss_pred CCCcE----------EEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhh----cccC-------
Confidence 98532 45555 47889999999954 66665543 4679999998654210 0000
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
++...+.+...++.+-|.|. +..|++|..||.|.+||+++++.+.... .-|..
T Consensus 139 -------p~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~ 191 (327)
T KOG0643|consen 139 -------PYLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS 191 (327)
T ss_pred -------ceEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence 11112223458899999999 7899999999999999999976442211 22444
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.|+.+.++|+..++++++.|.+-++||+.+.
T Consensus 192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred -ccccccccCCcceEEecccCccceeeeccce
Confidence 5999999999999999999999999999983
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.7e-29 Score=257.68 Aligned_cols=214 Identities=20% Similarity=0.324 Sum_probs=169.2
Q ss_pred ccEeee-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C------
Q 004739 11 QERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R------ 51 (732)
Q Consensus 11 ~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--------------------------------~------ 51 (732)
..+.+. +|.+.|.++.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 445566 8999999999999999999999999999998754 0
Q ss_pred ----------------------eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 52 ----------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 52 ----------------------~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
+.++.+ .||.+.|.++.|+.+ ++|+|++.|.+||+|++... .|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~----------~CL 403 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK----------ECL 403 (712)
T ss_pred ccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc----------cee
Confidence 011222 589999999999998 79999999999999999853 346
Q ss_pred eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
..|. |.+-|+|++|+|.+.++|++|+-||.||||++...+.. .| ..-..-|++
T Consensus 404 ~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-------------~W-------------~Dl~~lITA 456 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-------------DW-------------NDLRDLITA 456 (712)
T ss_pred eEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-------------ee-------------hhhhhhhee
Confidence 6665 99999999999999999999999999999999876521 11 112247999
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC-CEEEEEec
Q 004739 190 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYS 268 (732)
Q Consensus 190 i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~~~~~ 268 (732)
++|.|+ |+..++|+.+|.+++|+....+....+.-...... . ..+ . .|+.+.|.|.. ..+++.+.
T Consensus 457 vcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K----------k-~~~-~-rITG~Q~~p~~~~~vLVTSn 522 (712)
T KOG0283|consen 457 VCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK----------K-KQG-K-RITGLQFFPGDPDEVLVTSN 522 (712)
T ss_pred EEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc----------c-ccC-c-eeeeeEecCCCCCeEEEecC
Confidence 999999 89999999999999999987765433321111000 0 111 1 59999999844 46888899
Q ss_pred CCeEEEEECCC
Q 004739 269 GEHVYLMDVNH 279 (732)
Q Consensus 269 dg~v~iwd~~~ 279 (732)
|..|||||.++
T Consensus 523 DSrIRI~d~~~ 533 (712)
T KOG0283|consen 523 DSRIRIYDGRD 533 (712)
T ss_pred CCceEEEeccc
Confidence 99999999876
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=255.33 Aligned_cols=198 Identities=22% Similarity=0.344 Sum_probs=169.4
Q ss_pred eeec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEE-EccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 14 ELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 14 ~l~~-h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~-~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
.+.+ |...+.+..|. ..++++++.|++|++||..++..+.. + .+|.+.|.+++|... +.+|++|+.|.++++|
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERVW 276 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEeE
Confidence 3444 56788888888 56899999999999999999999888 6 899999999999874 4899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
|..++ .+...+.+|...|.++...+ .++++|+.|.+|++|++.++..
T Consensus 277 d~~sg----------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~-------------------- 323 (537)
T KOG0274|consen 277 DCSTG----------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC-------------------- 323 (537)
T ss_pred ecCCC----------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcce--------------------
Confidence 98863 34899999999999998854 6788999999999999997762
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
+....+|..+|.++..+ +.++++|+.|++|++||+.+++.+..+ .||.. .|
T Consensus 324 -----l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~V 374 (537)
T KOG0274|consen 324 -----LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-RV 374 (537)
T ss_pred -----EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-eE
Confidence 22333477899999998 459999999999999999988766555 77777 69
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+++.+.+. ..+++|+.|+.|++||+.+
T Consensus 375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 375 YSLIVDSE-NRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred EEEEecCc-ceEEeeeeccceEeecCCc
Confidence 99988776 7899999999999999988
No 66
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=3.6e-28 Score=235.73 Aligned_cols=455 Identities=14% Similarity=0.153 Sum_probs=298.8
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg--------~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
-.+.+-||+..|.|++.+||.-++++|-.-| .|||||..+-..++.+ ..-...|.|++|++...|.+|+.-
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEe
Confidence 3456779999999999999998899875544 5999998888888877 456678999999997656777665
Q ss_pred --ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 83 --AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 83 --~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+.+..+.|||...+.. ....+.-+..|....|+|.+++++++++. +.+.+|+++.+....+
T Consensus 175 D~s~~h~lSVWdWqk~~~----------~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~------ 237 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAK----------LGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR------ 237 (626)
T ss_pred cCCCccccchhhchhhhc----------cCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE------
Confidence 3456799999986432 33444556788999999999999999887 7899999988763210
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
..+...+.. ..|.|++|.++ + -+++|.++|.|.||+..+.+..+..
T Consensus 238 --------------~~~fek~ek-k~Vl~v~F~en-g-dviTgDS~G~i~Iw~~~~~~~~k~~----------------- 283 (626)
T KOG2106|consen 238 --------------QGIFEKREK-KFVLCVTFLEN-G-DVITGDSGGNILIWSKGTNRISKQV----------------- 283 (626)
T ss_pred --------------eeccccccc-eEEEEEEEcCC-C-CEEeecCCceEEEEeCCCceEEeEe-----------------
Confidence 011112222 58999999998 4 5899999999999999765432221
Q ss_pred cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee--eecCCCCceeeeccCCCCccCCCCCCccCCCc
Q 004739 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR--YTVGDASKIMSFTPTLNGLELQPPIHDFLQTN 318 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (732)
..|.+ .|.+++...+|. |++|+.|..|..||-.- +..... -..-..++.+ +--..+
T Consensus 284 ---~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv----------------~e~~~d 341 (626)
T KOG2106|consen 284 ---HAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTV----------------AEGKGD 341 (626)
T ss_pred ---eecCC-ceEEEEEecCcc-EeecCccceEEeccccc-cccccccCchhcCCeeEE----------------ecCCCc
Confidence 34555 499999999997 55599999999999322 211111 0011111111 100000
Q ss_pred cccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHh
Q 004739 319 IRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRD 398 (732)
Q Consensus 319 ~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 398 (732)
.+ .+..-+.+.- -.++++- ....++|.+. +|
T Consensus 342 -i~----vGTtrN~iL~-----Gt~~~~f---------~~~v~gh~de--------------------lw---------- 372 (626)
T KOG2106|consen 342 -IL----VGTTRNFILQ-----GTLENGF---------TLTVQGHGDE--------------------LW---------- 372 (626)
T ss_pred -EE----EeeccceEEE-----eeecCCc---------eEEEEecccc--------------------ee----------
Confidence 11 1111111110 0111000 1111222111 22
Q ss_pred HHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 004739 399 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPR 478 (732)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~ 478 (732)
..+..|+ ...+++++.|+.+.+|+..+
T Consensus 373 -------------------------------------gla~hps-----------~~q~~T~gqdk~v~lW~~~k----- 399 (626)
T KOG2106|consen 373 -------------------------------------GLATHPS-----------KNQLLTCGQDKHVRLWNDHK----- 399 (626)
T ss_pred -------------------------------------eEEcCCC-----------hhheeeccCcceEEEccCCc-----
Confidence 2344555 67788999999999997222
Q ss_pred CCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccC
Q 004739 479 TGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDA 558 (732)
Q Consensus 479 ~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 558 (732)
+. .+..+..+..+.+|.|.| .++.|...+.--+.+.+.....+++....++.+++|+
T Consensus 400 ---~~-wt~~~~d~~~~~~fhpsg-------------------~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys 456 (626)
T KOG2106|consen 400 ---LE-WTKIIEDPAECADFHPSG-------------------VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYS 456 (626)
T ss_pred ---ee-EEEEecCceeEeeccCcc-------------------eEEEeeccceEEEEecccceeEEEEecCCceEEEEEc
Confidence 11 112222222256666666 4555655555555555556667777778899999999
Q ss_pred CCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcc----------
Q 004739 559 NGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG---------- 628 (732)
Q Consensus 559 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg---------- 628 (732)
|||.+||.++.++-..+|.....+....+..-|.. ..|..+. ||+|++||.+-|-|-.|-.|.....
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLD-wS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk 533 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLD-WSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVK 533 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEee-ecCCCceEEeccCceEEEEEccccCcccceeccee
Confidence 99999999988877777877665555555544443 3344555 5999999999999999999942211
Q ss_pred -----------------------------------------------------cEEEEEecCcccEEEEeecCCCCeEEE
Q 004739 629 -----------------------------------------------------RLIKMLLGDEAVVNCVQCHPFDCVVAT 655 (732)
Q Consensus 629 -----------------------------------------------------~~~~~l~gH~~~V~~v~fsp~~~~l~S 655 (732)
..-..+.||++.|++|+|.-+.+.|.|
T Consensus 534 W~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~ 613 (626)
T KOG2106|consen 534 WATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLIS 613 (626)
T ss_pred eeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEe
Confidence 022233578999999999988888888
Q ss_pred ecCCCcEEEEcC
Q 004739 656 SGIDNTIKIWTP 667 (732)
Q Consensus 656 ~s~D~~i~vW~~ 667 (732)
.+.|..|..|++
T Consensus 614 tg~D~Si~qW~l 625 (626)
T KOG2106|consen 614 TGKDTSIMQWRL 625 (626)
T ss_pred cCCCceEEEEEe
Confidence 889999999975
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-28 Score=251.97 Aligned_cols=161 Identities=12% Similarity=0.173 Sum_probs=142.2
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
......|.+++|+|.. ..++++-..|.|++||.+.. .++..|.+|.++|..+.|+|.. .+|++|+.|
T Consensus 6 EskSsRvKglsFHP~r--PwILtslHsG~IQlWDYRM~----------tli~rFdeHdGpVRgv~FH~~q-plFVSGGDD 72 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKR--PWILTSLHSGVIQLWDYRMG----------TLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDD 72 (1202)
T ss_pred hcccccccceecCCCC--CEEEEeecCceeeeehhhhh----------hHHhhhhccCCccceeeecCCC-CeEEecCCc
Confidence 4566789999999995 89999999999999999964 3488999999999999999955 899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
-.|++|+..+.+ .+....+|...|..+.|++. -.+|++++.|.+||||+..+.+
T Consensus 73 ykIkVWnYk~rr-------------------------clftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 73 YKIKVWNYKTRR-------------------------CLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred cEEEEEecccce-------------------------ehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCc
Confidence 999999998876 34566788889999999998 6799999999999999999986
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+..+ .||.. .|.|..|+|....++++|-|.+|||||+..
T Consensus 127 ~iavl--------------------tGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 127 CIAVL--------------------TGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred eEEEE--------------------ecCce-EEEeeccCCccceEEEecccceEEEEeecc
Confidence 65544 67766 599999999999999999999999999987
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=4.7e-27 Score=269.10 Aligned_cols=188 Identities=15% Similarity=0.242 Sum_probs=142.7
Q ss_pred CCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccc
Q 004739 40 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH 115 (732)
Q Consensus 40 dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h 115 (732)
+|.+++|+..+......+. ..|.+.|.+++|+|+ |++|++|+.|+.|+||++........ ....+...+. +
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence 6778999988766554432 248999999999999 59999999999999999864211000 0001233333 3
Q ss_pred cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 116 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 116 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
...+.+++|+|..+.+|++++.||.|++||+.+++. +....+|...|++++|+|.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-------------------------~~~~~~H~~~V~~l~~~p~ 586 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-------------------------VTEMKEHEKRVWSIDYSSA 586 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE-------------------------EEEecCCCCCEEEEEEcCC
Confidence 467999999987678999999999999999987652 2223457779999999985
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc-CCCCEEEEEecCCeEEE
Q 004739 196 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL 274 (732)
Q Consensus 196 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg~v~i 274 (732)
++.+|++|+.|++|++||+++...+..+ ..+ . .+.++.|+ ++|.+|++|+.||.|++
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------~~~-~-~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTI--------------------KTK-A-NICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------ecC-C-CeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 5889999999999999999876544332 112 1 48899995 57999999999999999
Q ss_pred EECCC
Q 004739 275 MDVNH 279 (732)
Q Consensus 275 wd~~~ 279 (732)
||+++
T Consensus 645 wD~~~ 649 (793)
T PLN00181 645 YDLRN 649 (793)
T ss_pred EECCC
Confidence 99876
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=231.75 Aligned_cols=230 Identities=16% Similarity=0.235 Sum_probs=170.7
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
-.|++|+..|.++++.|.|..|++|+.|.+|+.||+..+. .-+.+.......|.++.|++. |..|+..+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCcce
Confidence 4578999999999999999999999999999999987543 223333345567999999998 4777777778889
Q ss_pred EEEEcCCCCCCCC--CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 89 RLFNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 89 ~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
+|+|-........ ....+.-+..-+||...+++.+|+|.+...|+|++.||++|+||+...+... .+
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-----------qV 307 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-----------QV 307 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe-----------eE
Confidence 9998764221000 0111122345678999999999999998999999999999999998876321 11
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
+... ...+....++.|+|+++ +.+||+|+.||.|.+|+......-.. +.....|
T Consensus 308 ik~k--------~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~-----------------~~vk~AH 361 (641)
T KOG0772|consen 308 IKTK--------PAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPV-----------------MKVKDAH 361 (641)
T ss_pred Eeec--------cCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccc-----------------eEeeecc
Confidence 1111 11134558899999999 78999999999999999865421111 1111233
Q ss_pred cc-ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 247 SS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 247 ~~-~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.. ..|++|.||++|++|++=+.|+++++||++..+
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 22 249999999999999999999999999999843
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.1e-26 Score=235.00 Aligned_cols=163 Identities=25% Similarity=0.392 Sum_probs=132.2
Q ss_pred EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004739 56 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 135 (732)
Q Consensus 56 ~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 135 (732)
.+ .+|..+|.+++|+|+ +++|++++.||.|++|++.... ....+..|...+..+.|+|++ ++++++
T Consensus 4 ~~-~~h~~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 69 (289)
T cd00200 4 TL-KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWDLETGE----------LLRTLKGHTGPVRDVAASADG-TYLASG 69 (289)
T ss_pred Hh-cccCCCEEEEEEcCC--CCEEEEeecCcEEEEEEeeCCC----------cEEEEecCCcceeEEEECCCC-CEEEEE
Confidence 44 589999999999999 5899999999999999998632 256777899999999999955 889999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
+.||.|++||+.+++.. .....+...+.++.|+++ +.++++++.|+.|++||++
T Consensus 70 ~~~~~i~i~~~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 70 SSDKTIRLWDLETGECV-------------------------RTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred cCCCeEEEEEcCcccce-------------------------EEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECC
Confidence 99999999999875421 111234557999999998 7788888889999999998
Q ss_pred CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+.+....+ ..|.. .+.+++|+|+++++++++.++.|++||+.+
T Consensus 124 ~~~~~~~~--------------------~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 124 TGKCLTTL--------------------RGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred CcEEEEEe--------------------ccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 66544332 22333 599999999999888888899999999875
No 71
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1e-25 Score=237.68 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=162.7
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE-------------EEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~-------------~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
|-..|+....++|+..+++++.+..+..|+...+..+. .+ .+|.+.|++++|+|.. +++|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence 45667777788887778888888888888865443221 23 6899999999999932 489999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
|++|++||+...... .....++..+.+|...|.+++|+|.+.++|++++.|+.|++||+.+++..
T Consensus 97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------ 161 (493)
T PTZ00421 97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------ 161 (493)
T ss_pred CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence 999999999753211 01124567889999999999999976689999999999999999876521
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
.....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+ .
T Consensus 162 -------------~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~ 207 (493)
T PTZ00421 162 -------------EVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E 207 (493)
T ss_pred -------------EEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence 122346668999999998 789999999999999999987654433 3
Q ss_pred CCccccEEEEEEcCCCCEEEEEe----cCCeEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~----~dg~v~iwd~~~ 279 (732)
+|.+..+..+.|.+++..|++++ .|+.|++||+++
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 44443355778999888777664 378999999876
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=223.82 Aligned_cols=201 Identities=17% Similarity=0.280 Sum_probs=165.2
Q ss_pred cCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 18 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 18 h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
-.+.|.+++|+|... -+|+++. -.+.||+..+...+.++ ...+..|.++.|..+ |.+|+.|...|.|+|||..+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH
Confidence 357899999999543 3554443 57999999988888777 577888999999999 699999999999999996541
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
..+..+.+|..+|..+.|+|++...|++|+.|+.+++||+.+.. .
T Consensus 101 ----------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-------------------------v 145 (487)
T KOG0310|consen 101 ----------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-------------------------V 145 (487)
T ss_pred ----------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-------------------------E
Confidence 23788999999999999999998999999999999999998764 1
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
.....+|...|.+.+|+|.+++++++|+.||.||+||++... .+.++ .| +.+|-++.
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---------------------nh-g~pVe~vl 203 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---------------------NH-GCPVESVL 203 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe---------------------cC-CCceeeEE
Confidence 234567888999999999988899999999999999999762 22221 22 33799999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCC
Q 004739 256 FSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 256 ~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+-|.|..+++++. ..|+|||+.++
T Consensus 204 ~lpsgs~iasAgG-n~vkVWDl~~G 227 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-NSVKVWDLTTG 227 (487)
T ss_pred EcCCCCEEEEcCC-CeEEEEEecCC
Confidence 9999998888765 49999999874
No 73
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=206.47 Aligned_cols=257 Identities=16% Similarity=0.215 Sum_probs=200.1
Q ss_pred cccEee-eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 10 SQEREL-EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 10 ~~~~~l-~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
.++..| .+|+..|+.++|+|.|++||+||.|.++.||.-.. .+++..+ .||+..|.|++|+++ |++||+|+.|.
T Consensus 51 ~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~s--G~~LATCSRDK 127 (312)
T KOG0645|consen 51 TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSAS--GNYLATCSRDK 127 (312)
T ss_pred EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCC--CCEEEEeeCCC
Confidence 344444 36999999999999999999999999999997653 4688888 899999999999999 69999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.|-||.+.... .+++...+++|...|..+.|+|.. .+|++++.|.+|++|+-....
T Consensus 128 SVWiWe~dedd-------Efec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dd---------------- 183 (312)
T KOG0645|consen 128 SVWIWEIDEDD-------EFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDD---------------- 183 (312)
T ss_pred eEEEEEecCCC-------cEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCC----------------
Confidence 99999998422 247789999999999999999954 899999999999999876322
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
....+....+|...|.+++|++. |..|++++.|++|+||-..+.-+ ..|
T Consensus 184 ------dW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~~~~------------------------~~~ 232 (312)
T KOG0645|consen 184 ------DWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYTDLS------------------------GMH 232 (312)
T ss_pred ------CeeEEEEecCccceEEEEEecCC-CceEEEecCCcceEeeeeccCcc------------------------hhc
Confidence 11133445567779999999999 78999999999999998653210 113
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCC-cccccccc
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQT-NIRVRGEV 325 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~ 325 (732)
.. +++.+.|. +| .|++++.|+.|++|.-....... ..--+......|+..+.++++.|. ...++
T Consensus 233 sr-~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p---------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~--- 297 (312)
T KOG0645|consen 233 SR-ALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEP---------SWNLLAKKEGAHEVDVNSVQWNPKVSNRLA--- 297 (312)
T ss_pred cc-ceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCc---------hHHHHHhhhcccccccceEEEcCCCCCcee---
Confidence 23 59999998 44 69999999999999766421110 000011133456667888888884 56677
Q ss_pred ccCcchhhHHHHHHHhhhh
Q 004739 326 ATGLGKCRMLVEIARNSLE 344 (732)
Q Consensus 326 ~~~~d~~~~l~~~~~~~~~ 344 (732)
+++.|+.+++ |.++
T Consensus 298 s~~DDG~v~~-----W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNF-----WELE 311 (312)
T ss_pred ecCCCceEEE-----EEec
Confidence 9999999998 7654
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.3e-26 Score=244.50 Aligned_cols=209 Identities=16% Similarity=0.222 Sum_probs=163.2
Q ss_pred eecc-CCceeEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CeeEEEEccCCCcCeEEEEEecCCCCCEE
Q 004739 15 LEGH-QGCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELV 79 (732)
Q Consensus 15 l~~h-~~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~------------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l 79 (732)
+-+| ...|.+++.+|||..+|||+ .|+.++||+... .+.+... ..|.+.|+|+.|+|+ |.+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~l 84 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYL 84 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeE
Confidence 3344 57799999999999999999 899999998641 2344455 689999999999999 6999
Q ss_pred EEEECCCcEEEEEcCC-CC-------CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004739 80 VSGAGDAEVRLFNLSR-FS-------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 151 (732)
Q Consensus 80 ~s~~~dg~i~vwd~~~-~~-------~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 151 (732)
|+|+.|+.|.||+... +. +.......++.+..+.+|...|..+.|+|+ +.++++++.|++|.+|+..+.+
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF~- 162 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNSVIIWNAKTFE- 162 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccceEEEEccccce-
Confidence 9999999999999873 10 112233445678899999999999999994 5999999999999999998875
Q ss_pred CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004739 152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 231 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 231 (732)
.+....+|...|..+.|+|- |++|++-+.|++|+||+..+....+.+..+.. .
T Consensus 163 ------------------------~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--~ 215 (942)
T KOG0973|consen 163 ------------------------LLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--E 215 (942)
T ss_pred ------------------------eeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchh--h
Confidence 23445678889999999999 89999999999999999766443333221100 0
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
. .....+..+.|+|||++|++...
T Consensus 216 ------------~-~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 216 ------------S-PLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred ------------C-CCcceeeecccCCCcCeecchhh
Confidence 0 11114888999999999998754
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=220.14 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=136.4
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
..|++.|.-+.||++ |++|||++.|.+..+|.+..-.. .+..+++.+|..+|..+.|+||+ +++++|+.|
T Consensus 221 ~~htdEVWfl~FS~n--GkyLAsaSkD~Taiiw~v~~d~~-------~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~ 290 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHN--GKYLASASKDSTAIIWIVVYDVH-------FKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFD 290 (519)
T ss_pred hhCCCcEEEEEEcCC--CeeEeeccCCceEEEEEEecCcc-------eeeeeeeecccCceEEEEECCCC-CeEEecCch
Confidence 689999999999999 69999999999999999874221 35578999999999999999966 899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
..+.+||+.++.... ....++...+.+++|.|| +..+++|+.|+++..||++..
T Consensus 291 e~~~lwDv~tgd~~~------------------------~y~~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn- 344 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRH------------------------LYPSGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGN- 344 (519)
T ss_pred HheeeccCCcchhhh------------------------hcccCcCCCcceeEEccC-CceeEecCCCCcEEEecCCcc-
Confidence 999999999987431 111224568999999999 789999999999999999753
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+..+ .+.....|.++++.+||+++++.+.|..|++++..+
T Consensus 345 ~~~~W--------------------~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 345 ILGNW--------------------EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred hhhcc--------------------cccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 23222 233333599999999999999999999999998766
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-24 Score=187.27 Aligned_cols=220 Identities=18% Similarity=0.302 Sum_probs=159.5
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC------CC--------eeEEEEccCCCcCeEEEEEecCCC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SR--------KLLHSIETGHSANVFCTKFVPETS 75 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~------~~--------~~~~~~~~~h~~~V~~~~~s~~~~ 75 (732)
+.+.+|. ....|.+++|+|.|.+.|+|+...+.||-... .+ ..+..-.+.|.+.|+|.+|+|.
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-- 100 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-- 100 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--
Confidence 3445554 57889999999999999999999999987432 11 1222222578999999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CCcEEEEEe-CCCcEEEEECCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSAS-EDGTLRQHDFRQGSS 151 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s-~dg~i~vwd~~~~~~ 151 (732)
|++|++|+.|.+|++-.+.....+.. -+-..+.-|.+.|..++|..+ ++.+|++++ .|..|++-|..+++
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~-----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~- 174 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNAT-----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ- 174 (350)
T ss_pred cCeEEecCCCceEEEEeccccccccc-----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-
Confidence 69999999999999987764332221 234567789999999999642 446777765 46677777877776
Q ss_pred CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE-EecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004739 152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 230 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 230 (732)
.+....+|.+.|.++ .|+ +-++++|+.|.+||+||++-...+
T Consensus 175 ------------------------~~~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v---------- 217 (350)
T KOG0641|consen 175 ------------------------GFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCV---------- 217 (350)
T ss_pred ------------------------cceeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeecccee----------
Confidence 233445566666655 344 679999999999999999865433
Q ss_pred CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+..... ....|-....|.+++..|.|++|++|-.|....+||++.
T Consensus 218 ---~~l~~~-~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 218 ---NTLDND-FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred ---eeccCc-ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 322211 111333344699999999999999999999999999877
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=201.08 Aligned_cols=235 Identities=24% Similarity=0.306 Sum_probs=197.4
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+..+++++.||...|..++.+.|...+++|+.|+.|.+||+.+|+.++++ .+|.+.|+.++|+.++ ..+++|+.|.+
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNees--SVv~SgsfD~s 124 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEES--SVVASGSFDSS 124 (307)
T ss_pred ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcc--eEEEeccccce
Confidence 56688999999999999999999999999999999999999999999999 8999999999999985 89999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
+++||.+..+ .+|++.+....+.|.++.... +.|++|+.||++|.||++.+...
T Consensus 125 ~r~wDCRS~s--------~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~--------------- 178 (307)
T KOG0316|consen 125 VRLWDCRSRS--------FEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLS--------------- 178 (307)
T ss_pred eEEEEcccCC--------CCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceee---------------
Confidence 9999999654 367899999999999999853 78999999999999999998732
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.. ....+|++++|+++ ++..++++.|+++|+.|-.+++.+..+ .||.
T Consensus 179 ----------sD--y~g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY--------------------kGhk 225 (307)
T KOG0316|consen 179 ----------SD--YFGHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY--------------------KGHK 225 (307)
T ss_pred ----------hh--hcCCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh--------------------cccc
Confidence 11 12238999999999 889999999999999999999877665 4554
Q ss_pred cc-cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC-CceeeeccCCCC
Q 004739 248 SL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNG 304 (732)
Q Consensus 248 ~~-~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (732)
+. .-...++.....++++|+.||.|++||+.+......+..++.. +..++++|.+..
T Consensus 226 n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 226 NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred cceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 32 1345567777788999999999999999997665555544444 556667776544
No 78
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=235.96 Aligned_cols=230 Identities=17% Similarity=0.274 Sum_probs=172.2
Q ss_pred eeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 14 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.+.||.++|++++|+| ++++||+|+.|++|+|||+.++. .+..+ .+|...|.+++|+|.. +++|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeCC
Confidence 5789999999999999 88999999999999999997652 45566 7999999999999984 4799999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
++|+|||+.++ ..+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++..
T Consensus 148 gtVrIWDl~tg----------~~~~~l~~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~v------------- 203 (493)
T PTZ00421 148 MVVNVWDVERG----------KAVEVIKCHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTIV------------- 203 (493)
T ss_pred CEEEEEECCCC----------eEEEEEcCCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcEE-------------
Confidence 99999999864 236778889999999999995 489999999999999999987621
Q ss_pred EeeccCCccccccCCCCCcc-ceEEEEecCCCCCEEEEEe----CCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004739 166 LLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~tg~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
.....|.. .+..+.|.++ +..+++++ .|+.|++||+++...... ..
T Consensus 204 ------------~tl~~H~~~~~~~~~w~~~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~------------~~---- 254 (493)
T PTZ00421 204 ------------SSVEAHASAKSQRCLWAKR-KDLIITLGCSKSQQRQIMLWDTRKMASPYS------------TV---- 254 (493)
T ss_pred ------------EEEecCCCCcceEEEEcCC-CCeEEEEecCCCCCCeEEEEeCCCCCCcee------------Ee----
Confidence 01111222 2346678887 44565543 479999999986532110 00
Q ss_pred cccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCccee-eecCCCCceeeeccC
Q 004739 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR-YTVGDASKIMSFTPT 301 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 301 (732)
..+....+....|++++++|++++. |+.|++||+.++...... +....+.+.+++.|.
T Consensus 255 ---~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 ---DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 1111223666789999999998884 999999999986533221 223445566666664
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=212.62 Aligned_cols=201 Identities=19% Similarity=0.317 Sum_probs=174.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
..|+++...|....++||+.|.++.++|...++.+..+ .||...|+.+.|+|+. ..+++++.|..|+||.....+.
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccch--hheeecCCcceEEeeccccccC-
Confidence 57888888888789999999999999999999999998 8999999999999995 8899999999999999886542
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
......|..+|+.+..+|. +.||++++.|++..+.|++++..+ .+..
T Consensus 296 ---------~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~l-----------------------t~vs 342 (506)
T KOG0289|consen 296 ---------PTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQL-----------------------TVVS 342 (506)
T ss_pred ---------ccccccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEE-----------------------EEEe
Confidence 4567789999999999995 499999999999999999998743 1111
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
.......+++.+|+|| |.+|.+|..|+.|+|||+.+......+ .+|.+ +|..++|+.+
T Consensus 343 ~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN 400 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN 400 (506)
T ss_pred eccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence 1123347899999999 889999999999999999987665555 66666 7999999999
Q ss_pred CCEEEEEecCCeEEEEECCC
Q 004739 260 GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 260 g~~l~~~~~dg~v~iwd~~~ 279 (732)
|-+|++++.|+.|++||++.
T Consensus 401 GY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred ceEEEEEecCCeEEEEEehh
Confidence 99999999999999999988
No 80
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.7e-26 Score=207.06 Aligned_cols=222 Identities=23% Similarity=0.309 Sum_probs=184.4
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.+.+++.|.||.++|..++.......+.+++.|.+.+||.++++.|+.++ .+|.+.|++++|++. +.++++++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~t 213 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDET 213 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCcc
Confidence 45678889999999999999888889999999999999999999999999 899999999999998 599999999999
Q ss_pred EEEEEcC----CCCCC------------CC--------------CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC
Q 004739 88 VRLFNLS----RFSGR------------GL--------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 137 (732)
Q Consensus 88 i~vwd~~----~~~~~------------~~--------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~ 137 (732)
..||... .++.. +. ...-..|+..+.+|...|.+..|.. +++.+++++.
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSW 292 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASW 292 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeec
Confidence 9999721 11100 00 0011246778899999999999998 6689999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
|.+..+||+++++. +..+.+|...++.++-+|. .+++++.+.|.+.|+||++..
T Consensus 293 DRTAnlwDVEtge~-------------------------v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 293 DRTANLWDVETGEV-------------------------VNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cccceeeeeccCce-------------------------eccccCcchhccccccCCc-ceEEEEeccCceeEeccchhh
Confidence 99999999999983 4445677778899999998 679999999999999999843
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+ +.+..| +||.. .|+++.|..+.+ +++|+.|.+|+|||+++.
T Consensus 347 --I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 347 --I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred --c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccc
Confidence 2 122333 78887 599999998765 899999999999999983
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-25 Score=223.74 Aligned_cols=192 Identities=18% Similarity=0.283 Sum_probs=156.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
+.|+ ..+.||+|.. ..|++|+..+++..... ..+...|+++.|+++ |.+|+.|..+|.|.|||.....
T Consensus 183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k------- 250 (484)
T KOG0305|consen 183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQK------- 250 (484)
T ss_pred hhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECCC--CCEEEEeecCCeEEEEehhhcc-------
Confidence 5677 3456777654 57999999998866555 445899999999999 6999999999999999998643
Q ss_pred CCCCceeecc-ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004739 105 AITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 183 (732)
Q Consensus 105 ~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (732)
.+..+.+ |...|-+++|. ...+.+|+.|+.|.++|++..+... ....+|
T Consensus 251 ---~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~------------------------~~~~~H 300 (484)
T KOG0305|consen 251 ---KTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVV------------------------STLQGH 300 (484)
T ss_pred ---ccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhh------------------------hhhhcc
Confidence 2567777 99999999997 3789999999999999999887431 124567
Q ss_pred ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCE
Q 004739 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEE 262 (732)
Q Consensus 184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~ 262 (732)
...|..++|+++ +.+||+|+.|+.+.|||.....++..+ ..|.. .|..++|+| ....
T Consensus 301 ~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~p~~~~--------------------~~H~a-AVKA~awcP~q~~l 358 (484)
T KOG0305|consen 301 RQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPEPKFTF--------------------TEHTA-AVKALAWCPWQSGL 358 (484)
T ss_pred cceeeeeEECCC-CCeeccCCCccceEeccCCCccccEEE--------------------eccce-eeeEeeeCCCccCc
Confidence 779999999999 899999999999999999766555443 45666 599999999 5567
Q ss_pred EEEEec--CCeEEEEECCCC
Q 004739 263 VLLSYS--GEHVYLMDVNHA 280 (732)
Q Consensus 263 l~~~~~--dg~v~iwd~~~~ 280 (732)
||+|+. |+.|++||..++
T Consensus 359 LAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred eEEcCCCcccEEEEEEcCCC
Confidence 888865 999999999874
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=201.80 Aligned_cols=202 Identities=16% Similarity=0.219 Sum_probs=158.3
Q ss_pred ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 17 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 17 ~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
...+.|.+|+||| ...+|+.||.|++||+|+++. |..+.+-...|.++|.+++|+.+ |..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence 4578999999999 556777899999999999987 45555554689999999999999 5999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc--EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
+++ +.....|..+|..+.|-+ +.. .|+|||.|++|+.||++...++.. +
T Consensus 103 S~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t------------~----- 153 (347)
T KOG0647|consen 103 SGQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVAT------------L----- 153 (347)
T ss_pred CCC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeee------------e-----
Confidence 753 677888999999999988 434 899999999999999998764310 0
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
. -...++++..- ..+++++..++.|.+|++++.....+.. .......+.
T Consensus 154 ------~---LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~-------------------~SpLk~Q~R 202 (347)
T KOG0647|consen 154 ------Q---LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI-------------------ESPLKWQTR 202 (347)
T ss_pred ------e---ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh-------------------cCcccceee
Confidence 0 11255666554 3489999999999999997653221110 001122588
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+++..++....+.|+-+|.+.|..+..+
T Consensus 203 ~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 203 CVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred EEEEEecCCceEeeeecceEEEEecCCC
Confidence 9999999888899999999999988873
No 83
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=222.45 Aligned_cols=234 Identities=20% Similarity=0.262 Sum_probs=157.6
Q ss_pred cCCceeE--EEEcC---CCCEEEEEeCCCcEEEEeCCCCee------EEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 18 HQGCVNA--ISWNS---KGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 18 h~~~V~~--l~~s~---dg~~lasg~~dg~i~vWd~~~~~~------~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
|.-++.- ..|++ ....|+.+..||.|.++|....+. ++.. ..|.++|..++|.|. ...|++++.|.
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDs 122 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDS 122 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCc
Confidence 4445544 66765 335899999999999999765432 2333 589999999999995 48999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
++++||+....... ...+.+|...|.+++|.|.++..|++|+.||.|.|||++-...-.. ......+
T Consensus 123 T~r~Wdvk~s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~-----e~~~~~~ 189 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL-----EEFDNRI 189 (720)
T ss_pred eeeeeeeccceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH-----HHHhhhh
Confidence 99999999754322 3458899999999999999999999999999999999986651100 0000111
Q ss_pred eeccCCc-------cccccCCCCCcc----ceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccc
Q 004739 167 LDLRCGA-------KRSLADPPKQTL----SLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 167 ~~~~~~~-------~~~~~~~~~~~~----~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
++..++. .+.......+.. .|+.+.| -| ...||+++. |+.|+|||++........... -..
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-----~~~ 262 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPR-----GSD 262 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCCC-----ccc
Confidence 1111110 001111112222 3444544 44 568888887 999999999976543322110 011
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+ +. .......+.++.....|.+|++.+.|+.|++||+.+
T Consensus 263 ~~---~t--~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 263 KY---PT--HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred Cc---cC--cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 11 01 011122388899999999999999999999999987
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-24 Score=199.47 Aligned_cols=197 Identities=21% Similarity=0.251 Sum_probs=158.6
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
..+.|+.+.|+|.+..|+.++.||++++||+........+ .|+.++.+++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc
Confidence 4789999999999999999999999999999988776666 69999999999997 789999999999999999754
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
...+..|...|.+|.+.+ ....+++||.|++|++||.+.....
T Consensus 87 -----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~------------------------- 129 (323)
T KOG1036|consen 87 -----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVV------------------------- 129 (323)
T ss_pred -----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccc-------------------------
Confidence 355677999999999998 5578899999999999999864321
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
........|.++... ++.|++|+.|..|.+||+++.....+.. ...-...+.++++-
T Consensus 130 -~~~d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~r-------------------eS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 130 -GTFDQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRR-------------------ESSLKYQTRCVALV 186 (323)
T ss_pred -cccccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhc-------------------cccceeEEEEEEEe
Confidence 001122278888887 5699999999999999999875432111 00112258999999
Q ss_pred CCCCEEEEEecCCeEEEEECCC
Q 004739 258 PNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|++.-.++++-||.|.+=.++.
T Consensus 187 pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred cCCCceEEEeecceEEEEccCC
Confidence 9888899999999988755554
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.7e-25 Score=220.62 Aligned_cols=204 Identities=20% Similarity=0.276 Sum_probs=166.0
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE-EEccCCCcCeEE-EEEecCCCCCEEEEEECC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFC-TKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~-~~~~~h~~~V~~-~~~s~~~~g~~l~s~~~d 85 (732)
..+..+++.||+..|..+++.+. ..++++|.||++++|+-..++.+. ....+|.+-|.+ ++|.+. .+..+++|+.|
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~~l~~g~~D 80 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKGRLVVGGMD 80 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCcceEeeccc
Confidence 45778899999999999998754 489999999999999977666554 333678888877 888873 24679999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
.+|.+|.+... .|+..+++|...|.++....++ .+++||.|.++++|......
T Consensus 81 ~~i~v~~~~~~----------~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~--------------- 133 (745)
T KOG0301|consen 81 TTIIVFKLSQA----------EPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV--------------- 133 (745)
T ss_pred ceEEEEecCCC----------CchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh---------------
Confidence 99999998863 5689999999999999876533 38899999999999875432
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
....+|...|+++.+-|.+ .++||+.|.+|++|.-. +.+ ++| .|
T Consensus 134 ------------~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~~l-------------~tf-------~g 177 (745)
T KOG0301|consen 134 ------------YSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--TLL-------------KTF-------SG 177 (745)
T ss_pred ------------cccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--chh-------------hhh-------cc
Confidence 2256788899999999973 89999999999999764 223 333 77
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
|.+ .|..+++-+++. +++++.||.|+.|++.
T Consensus 178 HtD-~VRgL~vl~~~~-flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 178 HTD-CVRGLAVLDDSH-FLSCSNDGSIRLWDLD 208 (745)
T ss_pred chh-heeeeEEecCCC-eEeecCCceEEEEecc
Confidence 887 499999999865 8999999999999873
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=4e-25 Score=207.71 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=131.6
Q ss_pred CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeC
Q 004739 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASE 137 (732)
Q Consensus 60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~ 137 (732)
.|.+.|.++...+ ..|++|+.||.+++||... +..+.+.+|.++|.+++|.-.+. ..|++++.
T Consensus 103 ~hdDWVSsv~~~~----~~IltgsYDg~~riWd~~G-----------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 103 LHDDWVSSVKGAS----KWILTGSYDGTSRIWDLKG-----------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred cchhhhhhhcccC----ceEEEeecCCeeEEEecCC-----------ceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 5888888888773 6899999999999999983 34789999999999888865332 36999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
|.++++|.++.++.. ...+....+|...|.+++..++ +.++++|+.|.+|.||+..+.
T Consensus 168 Dqtl~Lw~~~~~~~~---------------------~~~~~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~ 225 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENK---------------------VKALKVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETD 225 (423)
T ss_pred CceEEEEEecCchhh---------------------hhHHhHhcccccceeEEEecCC-CCeEEeecccceeeecccCCC
Confidence 999999999887643 1122223378889999999999 889999999999999993221
Q ss_pred C--CCcccccCCC----CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 218 P--PLTSCQKRMS----PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 218 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
. .+.....+.. .........|. ..-.||.. +|.++.|++ ...+++++.|.+|+.||+.+++
T Consensus 226 ~~~~~E~~s~~rrk~~~~~~~~~~r~P~-vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 226 EEDELESSSNRRRKKQKREKEGGTRTPL-VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ccccccccchhhhhhhhhhhcccccCce-EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 1 1111111000 00000011111 11167877 699999998 5579999999999999999853
No 87
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.3e-26 Score=222.76 Aligned_cols=259 Identities=17% Similarity=0.236 Sum_probs=207.1
Q ss_pred hhhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 3 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 3 ~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
|++....++++++.||..+|.+++|+++|..+.|++.|+.|++||+++|+++.++. -...++|+.|.|+. .+.+++|
T Consensus 242 W~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~-~n~fl~G 318 (503)
T KOG0282|consen 242 WNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDN-QNIFLVG 318 (503)
T ss_pred EEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCC-CcEEEEe
Confidence 34555678999999999999999999999999999999999999999999999983 34568999999995 4899999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
+.|+.|+.||++++ +.++.+..|-+.|..+.|-++ +..+++.+.|++++||+.+.+-.+..
T Consensus 319 ~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v~ik~-------- 379 (503)
T KOG0282|consen 319 GSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPVPIKN-------- 379 (503)
T ss_pred cCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCccchh--------
Confidence 99999999999975 337888899999999999994 58999999999999999988764311
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
+.. .......++..+|+ +.++++-+.|+.|.+|.+...-.+..- +.|
T Consensus 380 --------------i~~--~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nkk----------K~f------ 426 (503)
T KOG0282|consen 380 --------------IAD--PEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNKK----------KRF------ 426 (503)
T ss_pred --------------hcc--hhhccCcceecCCC-CCeehhhccCceEEEEecccccccCHh----------hhh------
Confidence 111 12225678899998 789999999999999997644322211 111
Q ss_pred cCCCc-cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccc
Q 004739 243 EHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRV 321 (732)
Q Consensus 243 ~~~~~-~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 321 (732)
.||. .+.-..+.|||||++|++|..||.+.+||.++.+....+..+..++..+.|+|... ..+
T Consensus 427 -eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~---------------Skv 490 (503)
T KOG0282|consen 427 -EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP---------------SKV 490 (503)
T ss_pred -cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc---------------cee
Confidence 3343 12356799999999999999999999999999887777777777777777777532 234
Q ss_pred ccccccCcchhhHH
Q 004739 322 RGEVATGLGKCRML 335 (732)
Q Consensus 322 ~~~~~~~~d~~~~l 335 (732)
+ +++-++.+++
T Consensus 491 a---t~~w~G~Iki 501 (503)
T KOG0282|consen 491 A---TCGWDGLIKI 501 (503)
T ss_pred E---ecccCceeEe
Confidence 4 7777887776
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-26 Score=202.71 Aligned_cols=215 Identities=17% Similarity=0.302 Sum_probs=183.1
Q ss_pred hhccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 7 RRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.+-++++.++.|+..|.++.|++ +++.++++|.|++|++|+...++.+.++ .+|...|...+|+|.. ++++++++.|
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~-~nlfas~Sgd 169 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHI-PNLFASASGD 169 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCC-CCeEEEccCC
Confidence 34568899999999999999998 5667888899999999999999999999 8999999999999987 6999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+++++||++.+. + ...+..|...|.++.|+..+.++++||+.|+.|++||++..+.
T Consensus 170 ~~l~lwdvr~~g-k---------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------------- 225 (311)
T KOG0277|consen 170 GTLRLWDVRSPG-K---------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------------- 225 (311)
T ss_pred ceEEEEEecCCC-c---------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--------------
Confidence 999999998752 2 2447889999999999998989999999999999999998763
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
++....+|...|..++|+|....+|++++.|-++||||...... ++..+ ..
T Consensus 226 ----------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------------~~e~~-------~~ 276 (311)
T KOG0277|consen 226 ----------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------------AIETV-------DH 276 (311)
T ss_pred ----------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh------------hhhhh-------hc
Confidence 34555678889999999999888999999999999999875431 11221 23
Q ss_pred CccccEEEEEEcC-CCCEEEEEecCCeEEEEEC
Q 004739 246 RSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 246 ~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~ 277 (732)
|.. -+..+.|++ ++.+++..+-|..++||+.
T Consensus 277 HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 HTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cce-EEeccccccccCceeeecccccceeeecc
Confidence 444 588999998 5668899999999999974
No 89
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=199.47 Aligned_cols=206 Identities=21% Similarity=0.359 Sum_probs=163.4
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
+.+...+..|.++|++++.+ +.++|+||.|-+|+|||+.+...+..+ ..|.+.|+++.|.+...-..|++|+.||.|
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCCCcE
Confidence 45567788999999999996 899999999999999999999999888 689999999999997423489999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
.+|+... +.++..+++|...|+.++.+|. +++.++.+.|+.++.||+-+++.. .+..
T Consensus 110 ~iw~~~~----------W~~~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a------------~v~~ 166 (362)
T KOG0294|consen 110 IIWRVGS----------WELLKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVA------------FVLN 166 (362)
T ss_pred EEEEcCC----------eEEeeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcCccc------------eeec
Confidence 9999985 3558999999999999999995 489999999999999999988732 1111
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
+. + .-+.+.|+|. |.+++.++.+ .|-+|.+.+......+.. .
T Consensus 167 L~------------~--~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~--------------------~-- 208 (362)
T KOG0294|consen 167 LK------------N--KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIEN--------------------P-- 208 (362)
T ss_pred cC------------C--cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhhc--------------------c--
Confidence 11 1 2244899998 7778887765 588998887654433211 1
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+.++.|- ++..|++|..|+.|.+||..+
T Consensus 209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred ccceeeeec-CCceEEEecCCceEEEeccCC
Confidence 125566665 455789999999999998765
No 90
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=5.7e-24 Score=225.13 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=148.4
Q ss_pred EeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc
Q 004739 37 GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT 116 (732)
Q Consensus 37 g~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 116 (732)
|+.++.|++|+......+..+ .+|.+.|.+++|+|+. +++|++|+.|++|+|||+.+...... ....++..+.+|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~~--~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESVK--EIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCcccc--ccccceEEeecCC
Confidence 567889999998887777778 7999999999999974 48999999999999999985321100 0013456788999
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004739 117 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 196 (732)
Q Consensus 117 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 196 (732)
..|.+++|+|++..+|++++.|+.|++||+++++.. .. + .+...|.+++|+|+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd- 178 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK- 178 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC-
Confidence 999999999977667789999999999999887521 00 0 12236899999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc----cEEEEEEcCCCCEEEEEecCC--
Q 004739 197 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL----HLTHVTFSPNGEEVLLSYSGE-- 270 (732)
Q Consensus 197 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~sp~g~~l~~~~~dg-- 270 (732)
|.+|++++.|+.|+|||+++++.+..+ .+|.+. .+....|++++.+|++++.|+
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 789999999999999999987655443 334431 133345678999999988764
Q ss_pred --eEEEEECCC
Q 004739 271 --HVYLMDVNH 279 (732)
Q Consensus 271 --~v~iwd~~~ 279 (732)
+|+|||+++
T Consensus 239 ~R~VkLWDlr~ 249 (568)
T PTZ00420 239 MREMKLWDLKN 249 (568)
T ss_pred ccEEEEEECCC
Confidence 799999986
No 91
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.8e-24 Score=195.69 Aligned_cols=223 Identities=17% Similarity=0.231 Sum_probs=158.5
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----eEE-EEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLH-SIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----~~~-~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+..|+||.+.|++++|+.||++|||++.|++|+||++++.. +++ .+..+ ..+.+.|.|+. ...++++-..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc-~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDC-KSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCc-ceEEEEEccC
Confidence 45689999999999999999999999999999999988643 222 12112 45789999997 3677777778
Q ss_pred CcEEEEEcCCCCC-CC-CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 86 AEVRLFNLSRFSG-RG-LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 86 g~i~vwd~~~~~~-~~-~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.++++|.+..... .. ........+..-+.|...+..+-... +..+|++++.|..|.+|++. ++.+..
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~--------- 223 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQS--------- 223 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeee---------
Confidence 8899998764322 11 11111222333445677777776654 66999999999999999998 553211
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.......-+..+.+|+ |+++++++.-..|++|.+--.+.- ++ ....+.| ..
T Consensus 224 ----------------idtnq~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG-~f------qev~rvf-----~L 274 (420)
T KOG2096|consen 224 ----------------IDTNQSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDG-TF------QEVKRVF-----SL 274 (420)
T ss_pred ----------------eccccccccceeeCCC-CcEEEEecCCCCceEEEEEeccCc-ch------hhhhhhh-----ee
Confidence 1112224467789999 899999999999999987432210 00 0111111 11
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.||.. .|..++|+|+...+++.+.||+.+|||++-
T Consensus 275 kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 275 KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccchh-heeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 67777 599999999999999999999999999865
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-26 Score=205.74 Aligned_cols=254 Identities=20% Similarity=0.234 Sum_probs=214.2
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
++.-+.++.||++.|.....+.+..+-|+++.|-+.+|||.-+|..++.| .|+.-|.+++|+.++ ++|++|+.+..
T Consensus 48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds--~~lltgg~ekl 123 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDS--NYLLTGGQEKL 123 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccc--hhhhccchHHH
Confidence 34567899999999999999999999999999999999999999999998 688889999999996 89999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
++|||++.++ .+...+.+|.+.|..+.|.. ..+.|++.+.|++||+||.+++....
T Consensus 124 lrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~-------------- 179 (334)
T KOG0278|consen 124 LRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQ-------------- 179 (334)
T ss_pred hhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEE--------------
Confidence 9999999764 33578899999999999998 44888899999999999999987321
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.+. -...|+++..+++ |+ +++-...+.|.+||..+...++.... .
T Consensus 180 --------sL~----~~s~VtSlEvs~d-G~-ilTia~gssV~Fwdaksf~~lKs~k~--------------------P- 224 (334)
T KOG0278|consen 180 --------SLE----FNSPVTSLEVSQD-GR-ILTIAYGSSVKFWDAKSFGLLKSYKM--------------------P- 224 (334)
T ss_pred --------EEe----cCCCCcceeeccC-CC-EEEEecCceeEEeccccccceeeccC--------------------c-
Confidence 011 1237899999998 54 55556678999999999887765422 1
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccccc
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 327 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 327 (732)
..|.+...+|+...+++|+.|+.++.||..++..... -.++|-.+|.++.|+|||...+ ++
T Consensus 225 -~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~---------------~nkgh~gpVhcVrFSPdGE~yA---sG 285 (334)
T KOG0278|consen 225 -CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS---------------YNKGHFGPVHCVRFSPDGELYA---SG 285 (334)
T ss_pred -cccccccccCCCceEEecCcceEEEEEeccCCceeee---------------cccCCCCceEEEEECCCCceee---cc
Confidence 1488999999999999999999999999999754321 1478888999999999999999 99
Q ss_pred CcchhhHHHHHHHhhhhcCCC
Q 004739 328 GLGKCRMLVEIARNSLEEGKH 348 (732)
Q Consensus 328 ~~d~~~~l~~~~~~~~~~~~~ 348 (732)
+.|++++| |....++.
T Consensus 286 SEDGTirl-----WQt~~~~~ 301 (334)
T KOG0278|consen 286 SEDGTIRL-----WQTTPGKT 301 (334)
T ss_pred CCCceEEE-----EEecCCCc
Confidence 99999999 88876664
No 93
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=219.10 Aligned_cols=503 Identities=14% Similarity=0.095 Sum_probs=306.0
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
+.--..+|.++||+.+.+.||.+-.||.|-||++...-....+..++ ...|.+++|++. ..|+|.+.+|.|.-||+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDL 97 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEec
Confidence 34456899999999999999999999999999999875554443555 468999999965 78999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.+. +++..+..-.+.|++++.+|.+ ..++.|+.||.+..++...++..
T Consensus 98 ~~l----------k~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~--------------------- 145 (691)
T KOG2048|consen 98 HTL----------KQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKIT--------------------- 145 (691)
T ss_pred ccC----------ceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEE---------------------
Confidence 974 3366777778999999999954 88889999997777776655421
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
.-.........|.+++|+|+ +..+++|+.||.|++||..++..+...... ...+ ..+ ...-|++
T Consensus 146 --~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-----------~d~l-~k~-~~~iVWS 209 (691)
T KOG2048|consen 146 --YKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQ-----------LDRL-SKR-EPTIVWS 209 (691)
T ss_pred --EEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeec-----------cccc-ccC-CceEEEE
Confidence 11112234568999999999 778999999999999999987655411100 0000 011 1223889
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhh
Q 004739 254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCR 333 (732)
Q Consensus 254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 333 (732)
+.|-.++ .|++|...|+|.+||...+...+ ....|...+.+++..+++..+. +++.|+.+
T Consensus 210 v~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq----------------S~~~h~adVl~Lav~~~~d~vf---saGvd~~i 269 (691)
T KOG2048|consen 210 VLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ----------------SHSCHDADVLALAVADNEDRVF---SAGVDPKI 269 (691)
T ss_pred EEEeecC-cEEEecCCceEEEEcccCcchhh----------------hhhhhhcceeEEEEcCCCCeEE---EccCCCce
Confidence 9998777 48999999999999999876443 4455666777777788877777 77777776
Q ss_pred HHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC-ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchh
Q 004739 334 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP-MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 412 (732)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 412 (732)
.. .....+.. . +........|..++.. +.....+.+++.|.++..=....+...
T Consensus 270 i~-----~~~~~~~~--~--wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~---------------- 324 (691)
T KOG2048|consen 270 IQ-----YSLTTNKS--E--WVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNM---------------- 324 (691)
T ss_pred EE-----EEecCCcc--c--eeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCch----------------
Confidence 64 33332211 0 0111122223322200 000002333443433322211100000
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCC--CCCCCC----CC-----c
Q 004739 413 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGG--ARSEPR----TG-----R 481 (732)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~--~~~~~~----~g-----~ 481 (732)
........|. ...+..+..+....+|... ..|-+. +| .
T Consensus 325 --------------------~h~~~~~~p~-----------~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~ 373 (691)
T KOG2048|consen 325 --------------------DHRQKNLFPA-----------SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIH 373 (691)
T ss_pred --------------------hhhccccccc-----------cceeecCccceEEEEeccccccceeccCcccccccChhh
Confidence 0001111221 2223333344444444211 111111 11 2
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCccee------eccCCCCcccc
Q 004739 482 VLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVR------IHRRGDSARET 555 (732)
Q Consensus 482 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~------~~~~~~~v~~~ 555 (732)
++.+.+.....-...+.|||| +.++.+.- ...+++.+.-..... .....-+...+
T Consensus 374 Llkl~~k~~~nIs~~aiSPdg------------------~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i 434 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAISPDG------------------NLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAI 434 (691)
T ss_pred heeeecCCccceeeeccCCCC------------------CEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceee
Confidence 333333333333378889999 55555432 224444442211111 11122345677
Q ss_pred ccCCCCCCCCCCC-CCCCCCcccccc-ccccceeEe--eeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEE
Q 004739 556 VDANGSSGSPSSS-SQNDRIPYQPET-VIDMKQRYV--GHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLI 631 (732)
Q Consensus 556 ~~s~d~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~--gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~ 631 (732)
.|+-|+..+...+ ...+-.....++ .++.+..+. +.... |..+. .||||+|||..+.+|.|.+|++++++.-
T Consensus 435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~---I~~l~-~SsdG~yiaa~~t~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPS---ISRLV-VSSDGNYIAAISTRGQIFVYNLETLESH 510 (691)
T ss_pred EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCc---ceeEE-EcCCCCEEEEEeccceEEEEEcccceee
Confidence 8888888777764 122222222222 122232222 22333 33333 6999999999999999999999998865
Q ss_pred EEEecCcccEEEEeecCCC-CeEEEecCCCcEEEEcC
Q 004739 632 KMLLGDEAVVNCVQCHPFD-CVVATSGIDNTIKIWTP 667 (732)
Q Consensus 632 ~~l~gH~~~V~~v~fsp~~-~~l~S~s~D~~i~vW~~ 667 (732)
.....-...||+++|+|.. +.|+.+-.|+.|.=+|+
T Consensus 511 ~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 511 LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred cchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 5553445889999999655 57888888999999988
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=229.36 Aligned_cols=201 Identities=27% Similarity=0.384 Sum_probs=171.2
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
...|.||.+.|.+++|..-+.+|++|+.|.+++|||..++++.+.+ .+|.+.|.++...+. ++++|+.|.+|++|
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~~----~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDPF----LLVSGSRDNTVKVW 316 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccCc----eEeeccCCceEEEE
Confidence 3349999999999999987789999999999999999999999999 799999999988764 78999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
++.++ .++..+.+|.++|+++... +.++++|+.|++|++||+.+++
T Consensus 317 ~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~--------------------- 362 (537)
T KOG0274|consen 317 DVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGK--------------------- 362 (537)
T ss_pred eccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhce---------------------
Confidence 99964 3378888899999999996 4799999999999999999776
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
.+....+|...|+++.+.+. ..+++|+.|++|++||+++. +.+..+ .+|.. -
T Consensus 363 ----cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl--------------------~~h~~-~ 415 (537)
T KOG0274|consen 363 ----CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTL--------------------QGHTS-L 415 (537)
T ss_pred ----eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhh--------------------cCCcc-c
Confidence 34556678889999988863 69999999999999999987 444433 55555 2
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+..+ ...+++|++++.|++|++||..++
T Consensus 416 v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 416 VSSL--LLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred cccc--ccccceeEeccccccEEEeecccC
Confidence 5444 346789999999999999998874
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=194.53 Aligned_cols=160 Identities=21% Similarity=0.271 Sum_probs=125.1
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
++|...|.+++|+-+ |..|++|+.|+++.+|++..... ..-....+|.+.|..++|+|..+.+|++++.|
T Consensus 17 ~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~r~--------~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERDRF--------RKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred hhhhhcceEEEEccc--CceeeecccCCceEEEEecchhh--------hhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 689999999999999 69999999999999999985421 11345678999999999999999999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
.+|++||++.++++... . ..+.=.-+.|+|+ +.++++++.|..|.+.|.++.+
T Consensus 87 k~ir~wd~r~~k~~~~i------------~--------------~~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~ 139 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARI------------E--------------TKGENINITWSPD-GEYIAVGNKDDRITFIDARTYK 139 (313)
T ss_pred ceEEEEEeccCcEEEEe------------e--------------ccCcceEEEEcCC-CCEEEEecCcccEEEEEecccc
Confidence 99999999998854111 0 0112235789999 7899999999999999999876
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~ 277 (732)
.....+ ....++.+.|+-++.+++..+.-|.|.|-..
T Consensus 140 ~~~~~~----------------------~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 140 IVNEEQ----------------------FKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred eeehhc----------------------ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 554331 1113778899987887777777777777643
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.5e-25 Score=220.33 Aligned_cols=227 Identities=20% Similarity=0.262 Sum_probs=178.3
Q ss_pred cCCcee---EEEEc-CCCCEEEEEeCCCcEEEEeCCCCe------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 18 HQGCVN---AISWN-SKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 18 h~~~V~---~l~~s-~dg~~lasg~~dg~i~vWd~~~~~------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
|...|. ++..+ |.+++|+|||.||.|++|++.... .+..+ +.|...|+.+....+ ++.|+|++.|-+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDtT 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDTT 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCce
Confidence 555555 45555 467789999999999999986432 35666 689999999999988 489999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|++|+...... .+..++..|.+.|.++++-..+..++|+||-|+.|.+||+.++....
T Consensus 97 VK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l-------------- 154 (735)
T KOG0308|consen 97 VKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL-------------- 154 (735)
T ss_pred EEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh--------------
Confidence 99999986431 45788899999999999944366899999999999999999874200
Q ss_pred eccCCccccccCCC-CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 168 DLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
+.+.......... ++...|++++.++. +..|++|+..+.+++||.++.+.+..+ .||
T Consensus 155 -~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rGH 212 (735)
T KOG0308|consen 155 -VASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RGH 212 (735)
T ss_pred -hhhccccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ecc
Confidence 0000011112222 67789999999998 789999999999999999998877666 778
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA 292 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 292 (732)
.. .|..+..++||..+++++.||+|++||+...+....+..|.+.
T Consensus 213 Td-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 213 TD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 87 5999999999999999999999999999886555444443333
No 97
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.5e-25 Score=203.26 Aligned_cols=248 Identities=18% Similarity=0.212 Sum_probs=203.2
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
.|.-|.++|.|+.||.|...||+|+.||.|+||.+.+|+|+++|...|...|+|+.|+.+ +..+++++.|.++++.-+
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGL 335 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEecc
Confidence 345588999999999999999999999999999999999999997799999999999999 489999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
+.+ +++..+++|..-|+...|.+++ +.+++++.||+|++|+..+.+...
T Consensus 336 KSG----------K~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~-------------------- 384 (508)
T KOG0275|consen 336 KSG----------KCLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLS-------------------- 384 (508)
T ss_pred ccc----------hhHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhh--------------------
Confidence 864 3489999999999999999955 899999999999999998877431
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
-..+.+...+|.++-.-|.++..++++...++|+|.++.. +.+.++ .. ....++...+
T Consensus 385 ---Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsf-------------sS-----GkREgGdFi~ 442 (508)
T KOG0275|consen 385 ---TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSF-------------SS-----GKREGGDFIN 442 (508)
T ss_pred ---hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeee-------------cc-----CCccCCceEE
Confidence 1222335568888988898888999999999999999874 222222 11 1122334777
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhh
Q 004739 254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCR 333 (732)
Q Consensus 254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 333 (732)
...+|.|.++++.+.|+.++.|.+.+++....+..+...+-.++.+| ..+.+| +-+.|+..
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP----------------HqNllA---sYsEDgll 503 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP----------------HQNLLA---SYSEDGLL 503 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc----------------ccchhh---hhcccchh
Confidence 88999999999999999999999999887776666555555555554 445667 88888888
Q ss_pred HH
Q 004739 334 ML 335 (732)
Q Consensus 334 ~l 335 (732)
++
T Consensus 504 KL 505 (508)
T KOG0275|consen 504 KL 505 (508)
T ss_pred hh
Confidence 88
No 98
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.1e-23 Score=223.02 Aligned_cols=233 Identities=15% Similarity=0.192 Sum_probs=164.9
Q ss_pred cccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe--------eEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004739 10 SQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVPETSDELVV 80 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~--------~~~~~~~~h~~~V~~~~~s~~~~g~~l~ 80 (732)
..+..+.+|.++|.+++|+|+ +.+||||+.|++|+|||+.++. .+..+ .+|...|.+++|+|++ ..+|+
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g-~~iLa 142 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMN-YYIMC 142 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCC-CeEEE
Confidence 456789999999999999996 7899999999999999997642 23345 6899999999999984 24568
Q ss_pred EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+++.|++|+|||+++... +..+. |...|.+++|+|++ .+|++++.|+.|++||+++++.+.
T Consensus 143 SgS~DgtIrIWDl~tg~~----------~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~------- 203 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKR----------AFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIAS------- 203 (568)
T ss_pred EEeCCCeEEEEECCCCcE----------EEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEE-------
Confidence 999999999999986431 33443 56789999999955 899999999999999999876320
Q ss_pred ccceEEeeccCCccccccCCCCCcc-----ceEEEEecCCCCCEEEEEeCCC----eEEEEECCCC-CCCcccccCCCCC
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTL-----SLKSCDISSTRPHLLLVGGSDA----FARLYDRRML-PPLTSCQKRMSPP 230 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~~l~tg~~dg----~v~iwd~~~~-~~~~~~~~~~~~~ 230 (732)
....|.. .+....|+++ +.+|++++.|+ .|+|||+++. +++..+..
T Consensus 204 ------------------tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l----- 259 (568)
T PTZ00420 204 ------------------SFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI----- 259 (568)
T ss_pred ------------------EEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-----
Confidence 1112222 2333456677 66888877764 7999999963 33322110
Q ss_pred CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc-eeeecCCCCceeeeccC
Q 004739 231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPT 301 (732)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (732)
..+.+ .+......++|.++++|+.|+.|++|++..+.... ..+....+.+.++|.|.
T Consensus 260 -------------d~~~~-~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 260 -------------DNASA-PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred -------------cCCcc-ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 11111 23444445678899999999999999998753211 11223344555666554
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-24 Score=220.23 Aligned_cols=244 Identities=15% Similarity=0.169 Sum_probs=205.3
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
..+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+..+|...|-+++|.. ..+.+|+.|+.|.++|++.
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEec
Confidence 334899999999999999999999999999999999999999433999999999994 5899999999999999997
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
.+.. ...+.+|...|..+.|++++ +++|+|+.|+.+.|||....++
T Consensus 290 ~~~~---------~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p------------------------ 335 (484)
T KOG0305|consen 290 SQHV---------VSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP------------------------ 335 (484)
T ss_pred chhh---------hhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc------------------------
Confidence 5432 23588999999999999955 9999999999999999955542
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
+.....|...|.+++|+|-...+||+|+ .|++|++||..++..+..+ ..+..|.+
T Consensus 336 -~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----------------------dtgsQVcs 392 (484)
T KOG0305|consen 336 -KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----------------------DTGSQVCS 392 (484)
T ss_pred -cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----------------------ccCCceee
Confidence 3334468889999999999888999985 5999999999988766544 22336999
Q ss_pred EEEcCCCCEEEEEec--CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcch
Q 004739 254 VTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGK 331 (732)
Q Consensus 254 l~~sp~g~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 331 (732)
|.|++..+.|+++.. ++.|.||+..+.+... .+.+|...|..++.+|||..++ +++.|.
T Consensus 393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~----------------~l~gH~~RVl~la~SPdg~~i~---t~a~DE 453 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLVA----------------ELLGHTSRVLYLALSPDGETIV---TGAADE 453 (484)
T ss_pred EEEcCCCCEEEEecCCCCCcEEEEeccccceee----------------eecCCcceeEEEEECCCCCEEE---EecccC
Confidence 999999977777644 7899999998844332 5667888888999999999999 999999
Q ss_pred hhHHHHHHHhhhh
Q 004739 332 CRMLVEIARNSLE 344 (732)
Q Consensus 332 ~~~l~~~~~~~~~ 344 (732)
++++ |.+-
T Consensus 454 Tlrf-----w~~f 461 (484)
T KOG0305|consen 454 TLRF-----WNLF 461 (484)
T ss_pred cEEe-----cccc
Confidence 9999 7664
No 100
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.1e-24 Score=214.87 Aligned_cols=215 Identities=18% Similarity=0.257 Sum_probs=149.4
Q ss_pred hccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEE-----EEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 8 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH-----SIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~-----~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
+-+-+..|.+|.+.|+.+.|+| +..+||||+.|..|+||.+..+-... ....+..-.|.|+.|+|.. +.++++
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa-Dgil~s 146 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA-DGILAS 146 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc-CceEEe
Confidence 3445667889999999999999 55689999999999999987542211 1112334568999999987 356665
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
+ .-|.++|||+.+. +.+..+.+|.+.|.+..|+.|+ .++++.+.|+.|+|||.+..-.......+|..
T Consensus 147 ~-a~g~v~i~D~stq----------k~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 147 G-AHGSVYITDISTQ----------KTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred c-cCceEEEEEcccC----------ceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccCCCcccccccccc
Confidence 5 5799999999974 3377889999999999999955 99999999999999999886544333333322
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC----CeEEEEECCCCC-CCcccccCCCCCCccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLTSCQKRMSPPPCVNYF 236 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d----g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 236 (732)
. .=..+.|..+ -..|++.+.+ ..|++||.+... +++++..
T Consensus 215 ~-----------------------rdsRv~w~Gn-~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tlel----------- 259 (1012)
T KOG1445|consen 215 M-----------------------RDSRVLWAGN-WERLISTGFTTKRIREVRAYDTRKFGAPVHTLEL----------- 259 (1012)
T ss_pred c-----------------------hhheeeeccc-hhhhhhcccchhhheeeeeeeccccCCcceeEEe-----------
Confidence 1 1234556544 2355555544 569999998643 2222110
Q ss_pred cccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 237 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
.....|.---|.||.++|+.++. +.+++.+.+..
T Consensus 260 ---------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 260 ---------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred ---------ecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 01112555567888887766665 77888888776
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=200.09 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=170.2
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE-EE---------------c-cCCCcCeEEEEEecCC
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SI---------------E-TGHSANVFCTKFVPET 74 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~-~~---------------~-~~h~~~V~~~~~s~~~ 74 (732)
++.+..|.-+|.+++++||..+.++++.|++|.=|++.+++... .+ . ..|...|.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D- 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD- 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence 56677899999999999999999999999999999998887441 11 1 267888999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004739 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 154 (732)
Q Consensus 75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 154 (732)
|++|++|+.|..|.||+.++. ++++.+.+|.+.|.+++|-. +.+.+++++.|++|++|++....
T Consensus 214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s---- 277 (479)
T KOG0299|consen 214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS---- 277 (479)
T ss_pred -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH----
Confidence 699999999999999999974 44788999999999999987 67889999999999999998765
Q ss_pred CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004739 155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
.+.+..+|...|.+|....- .+.+-+|+.|+++++|++....++-
T Consensus 278 ---------------------~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqli------------- 322 (479)
T KOG0299|consen 278 ---------------------YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLI------------- 322 (479)
T ss_pred ---------------------HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceee-------------
Confidence 34556678889999888775 5566667799999999995432211
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
| .++.+ .+-+++|-.+. .+++|+.+|.|.+|++...
T Consensus 323 -f-------rg~~~-sidcv~~In~~-HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 323 -F-------RGGEG-SIDCVAFINDE-HFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred -e-------eCCCC-CeeeEEEeccc-ceeeccCCceEEEeeeccc
Confidence 1 33444 48889987654 6999999999999999883
No 102
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3e-24 Score=196.23 Aligned_cols=176 Identities=21% Similarity=0.306 Sum_probs=136.4
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC--CC----C--CCCCCCCceeeccccCceeEEEEecCCCc
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG--RG----L--DDNAITPSALYQCHTRRVKKLAVEVGNPH 130 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~--~~----~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 130 (732)
..|+.++.+.+|+|+ |.++++|+.|..|+|.|++..-. .. . .......++++..|.+.|+++.|+|. ..
T Consensus 109 t~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ 185 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ET 185 (430)
T ss_pred eecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hh
Confidence 689999999999999 69999999999999999982100 00 0 01112346788899999999999995 49
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
+|++++.|++|+++|+...... ..........+|.+++|+|. |.+|++|....++|
T Consensus 186 ILiS~srD~tvKlFDfsK~saK-----------------------rA~K~~qd~~~vrsiSfHPs-GefllvgTdHp~~r 241 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAK-----------------------RAFKVFQDTEPVRSISFHPS-GEFLLVGTDHPTLR 241 (430)
T ss_pred eEEeccCCCeEEEEecccHHHH-----------------------HHHHHhhccceeeeEeecCC-CceEEEecCCCcee
Confidence 9999999999999999775421 00001112348999999998 88999999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+||+++.+..-. .. ...+|.+ .|+++.+++.|++.++++.||.|+|||--+
T Consensus 242 lYdv~T~Qcfvs----------------an-Pd~qht~-ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 242 LYDVNTYQCFVS----------------AN-PDDQHTG-AITQVRYSSTGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred EEeccceeEeee----------------cC-ccccccc-ceeEEEecCCccEEEEeccCCcEEeecccc
Confidence 999998743211 11 1245666 599999999999999999999999998554
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-24 Score=210.62 Aligned_cols=247 Identities=21% Similarity=0.257 Sum_probs=195.1
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
...+++.-..+.|+++.|..||++||.|...|.|+|+|..+...+..+ .+|+.+|..+.|+|.. +..+++|+.|+.++
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-NTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-CeEEEecCCCceEE
Confidence 344556667889999999999999999999999999997665556666 7999999999999986 68899999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+||+.+.. ....+.+|++.|.+.+|+|.++++++|||.||.|++||++..... +..
T Consensus 137 ~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-------------v~e- 192 (487)
T KOG0310|consen 137 YWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-------------VVE- 192 (487)
T ss_pred EEEcCCcE----------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-------------eEE-
Confidence 99999642 145788999999999999988899999999999999999886411 111
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
..|..+|.++.+-|. |.++++++ .+.|+|||+-++.++-... ..|..
T Consensus 193 -----------lnhg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~qll~~~-------------------~~H~K- 239 (487)
T KOG0310|consen 193 -----------LNHGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQLLTSM-------------------FNHNK- 239 (487)
T ss_pred -----------ecCCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCceehhhh-------------------hcccc-
Confidence 135558999999998 67888877 4689999998665432110 22555
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCc
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 329 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 329 (732)
.|+|+++..++..|++|+-|+.|++||+.+.+... .-....++.+++.+|+++.++ .+-.
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~-----------------s~~~~~pvLsiavs~dd~t~v---iGms 299 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH-----------------SWKYPGPVLSIAVSPDDQTVV---IGMS 299 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEE-----------------eeecccceeeEEecCCCceEE---Eecc
Confidence 59999999999999999999999999977643211 112345677888888888887 6666
Q ss_pred chhhHH
Q 004739 330 GKCRML 335 (732)
Q Consensus 330 d~~~~l 335 (732)
++...+
T Consensus 300 nGlv~~ 305 (487)
T KOG0310|consen 300 NGLVSI 305 (487)
T ss_pred cceeee
Confidence 666554
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.2e-23 Score=188.76 Aligned_cols=202 Identities=12% Similarity=0.186 Sum_probs=156.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
-.|+.|++.|.+||+|..||.|.|||+.+...-..+ .+|..+|.+++||++ |..|+|++.|..|++||+..++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs---- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS---- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC----
Confidence 789999999999999999999999999998866666 899999999999999 6999999999999999999754
Q ss_pred CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
+++.++ ...+|+...|+|.+.+.++..-.+..-.+-++..+... ++ +.....
T Consensus 99 ------~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-------------~L--------p~d~d~ 150 (405)
T KOG1273|consen 99 ------PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-------------VL--------PKDDDG 150 (405)
T ss_pred ------ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-------------ec--------cCCCcc
Confidence 355555 47899999999988777777666666666666554311 00 000000
Q ss_pred CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004739 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 261 (732)
Q Consensus 182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 261 (732)
.....-.+..|.+. |+++++|...|.+.++|..+.+.+..+.- .....|..+.|+..|+
T Consensus 151 dln~sas~~~fdr~-g~yIitGtsKGkllv~~a~t~e~vas~ri--------------------ts~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 151 DLNSSASHGVFDRR-GKYIITGTSKGKLLVYDAETLECVASFRI--------------------TSVQAIKQIIVSRKGR 209 (405)
T ss_pred ccccccccccccCC-CCEEEEecCcceEEEEecchheeeeeeee--------------------chheeeeEEEEeccCc
Confidence 11111223357777 89999999999999999998765544321 1112589999999999
Q ss_pred EEEEEecCCeEEEEECCC
Q 004739 262 EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~ 279 (732)
+|+..+.|..||.|+++.
T Consensus 210 ~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEEecCCceEEEEehhh
Confidence 999999999999999876
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=6.3e-24 Score=204.98 Aligned_cols=265 Identities=15% Similarity=0.266 Sum_probs=203.8
Q ss_pred ccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeE----------EEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 17 GHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLL----------HSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~----------~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.|.+.|+.+.+-|.. ..+|+++..+.|.|||..+..-. .++ .+|...=++++|++.. .-.|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~-~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQ-EGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccccc-ceeEeeccCC
Confidence 499999999999955 57777888999999997643211 144 6898878899999986 3689999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
++|++||+...... .....+...+.+|.+.|..++|++....+|++++.|+.+.|||+++....
T Consensus 200 ~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~------------- 263 (422)
T KOG0264|consen 200 HTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK------------- 263 (422)
T ss_pred CcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-------------
Confidence 99999999864431 12235677889999999999999998899999999999999999963211
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.......|...|.|++|+|.++.+||+|+.|++|++||+|+... ++..+ .+
T Consensus 264 ----------~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------~lh~~-------e~ 314 (422)
T KOG0264|consen 264 ----------PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------PLHTF-------EG 314 (422)
T ss_pred ----------CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------Cceec-------cC
Confidence 22333467889999999999999999999999999999998652 22222 66
Q ss_pred CccccEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCCcce-eeecCCCCceeeeccCCCCccCCCCCCccCCCcc-ccc
Q 004739 246 RSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI-RVR 322 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~ 322 (732)
|.. .|.+|.|+|.. ..|++++.|+.+.|||+..-...+. ......++..+- .-.||...|..+.+.|+-- .++
T Consensus 315 H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF---~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 315 HED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF---IHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred CCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE---EecCcccccccccCCCCCCeEEE
Confidence 766 59999999965 5778888899999999987554432 222222222221 2357888888888888655 455
Q ss_pred cccccCcchhhHH
Q 004739 323 GEVATGLGKCRML 335 (732)
Q Consensus 323 ~~~~~~~d~~~~l 335 (732)
+++.|+.+++
T Consensus 391 ---SvaeDN~LqI 400 (422)
T KOG0264|consen 391 ---SVAEDNILQI 400 (422)
T ss_pred ---EecCCceEEE
Confidence 9999999999
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=201.02 Aligned_cols=253 Identities=17% Similarity=0.185 Sum_probs=200.5
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
..+.+.+|+||...|+.+.|+|+...+++++.|..|+||........... ..|..+|+.+..+|. |.||++++.|++
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t--geYllsAs~d~~ 326 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT--GEYLLSASNDGT 326 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC--CcEEEEecCCce
Confidence 34567789999999999999999999999999999999998887766666 799999999999999 699999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
..+.|++++.... +..-....-.+++.+|+||+ .+|.+|..||.|++||+..+.
T Consensus 327 w~Fsd~~~g~~lt--------~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~----------------- 380 (506)
T KOG0289|consen 327 WAFSDISSGSQLT--------VVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT----------------- 380 (506)
T ss_pred EEEEEccCCcEEE--------EEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcc-----------------
Confidence 9999999753211 11111122458999999955 999999999999999998876
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.+...++|..+|..++|+.+ |++|++++.|+.|++||+|..+...++... .
T Consensus 381 --------~~a~Fpght~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt~~l~--------------------~ 431 (506)
T KOG0289|consen 381 --------NVAKFPGHTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKTIQLD--------------------E 431 (506)
T ss_pred --------ccccCCCCCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccceeecc--------------------c
Confidence 34456679999999999998 899999999999999999998766655321 1
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccccc
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 327 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 327 (732)
...+.++.|.+.|.+|++++.|=+|++++-.+..-.. ...+..+......+.|....++++ ++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~--------------~~~~~~~sg~st~v~Fg~~aq~l~---s~ 494 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTE--------------IKELADHSGLSTGVRFGEHAQYLA---ST 494 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEeccccccee--------------eehhhhcccccceeeecccceEEe---ec
Confidence 1148999999999999999888888888755422111 112334445667778888888888 88
Q ss_pred CcchhhHH
Q 004739 328 GLGKCRML 335 (732)
Q Consensus 328 ~~d~~~~l 335 (732)
+.|...++
T Consensus 495 smd~~l~~ 502 (506)
T KOG0289|consen 495 SMDAILRL 502 (506)
T ss_pred cchhheEE
Confidence 87776554
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-23 Score=184.96 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=107.5
Q ss_pred EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe-cCCCcEEEE
Q 004739 56 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVWS 134 (732)
Q Consensus 56 ~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s 134 (732)
++...|.+.|..+...-. |.+|+||+.|++|+|+.++.... ..++..+.+|.++|..++|. |.-+.+||+
T Consensus 5 ~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~-------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQ-------SKLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred ehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCC-------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 344679999988887776 69999999999999999987543 14578999999999999994 555699999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEE
Q 004739 135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYD 213 (732)
Q Consensus 135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd 213 (732)
++.||.|.||.-..++ .........|...|++++|.|.+ |-.|++++.||.|.|.+
T Consensus 76 csYDgkVIiWke~~g~-----------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~ 132 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGR-----------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT 132 (299)
T ss_pred eecCceEEEEecCCCc-----------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence 9999999999987764 22344556788899999999975 55789999999999999
Q ss_pred CCCC
Q 004739 214 RRML 217 (732)
Q Consensus 214 ~~~~ 217 (732)
.+..
T Consensus 133 ~~~~ 136 (299)
T KOG1332|consen 133 YDSS 136 (299)
T ss_pred EcCC
Confidence 8865
No 108
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.7e-23 Score=201.99 Aligned_cols=229 Identities=19% Similarity=0.278 Sum_probs=182.1
Q ss_pred ccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCe-------eEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004739 9 LSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVV 80 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~ 80 (732)
..+-..|.||.+.-+.++|++.. -.|++|+.|++|++||+.... ....+ .+|+..|..++|++.. ..+|+
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h-~~lF~ 244 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLH-EDLFG 244 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccc-hhhhe
Confidence 34556899999988999999854 389999999999999987432 23334 7999999999999986 58999
Q ss_pred EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+++.|+.+.|||+++.. .++.+...+|...|++++|+|.++.+|||||.|++|.+||+|+...
T Consensus 245 sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------- 307 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------- 307 (422)
T ss_pred eecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---------
Confidence 99999999999999632 1446778899999999999999999999999999999999998763
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCC-CCCCcccccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM-SPPPCVNYFCPM 239 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (732)
.+....+|...|..+.|+|.....|++++.|+.+.|||+..-...+...... .+|..
T Consensus 308 ---------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl------- 365 (422)
T KOG0264|consen 308 ---------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL------- 365 (422)
T ss_pred ---------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcce-------
Confidence 3455667888999999999988999999999999999997654333211111 11110
Q ss_pred ccccCCCccccEEEEEEcCCCCE-EEEEecCCeEEEEECCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~-l~~~~~dg~v~iwd~~~ 279 (732)
.+...||.. .|..+.|+|+..+ +++.+.|+.+.||.+..
T Consensus 366 lF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 366 LFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 112255665 5999999998875 55567799999999875
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=191.08 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=122.0
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCC--CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004739 78 LVVSGAGDAEVRLFNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 155 (732)
Q Consensus 78 ~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 155 (732)
.|+.|+....|.-+++......+. ......++..+..|..+|++++++ +.++|+||.|.+|+|||+++....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql--- 76 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL--- 76 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh---
Confidence 467788887777777764331111 112234578889999999999995 489999999999999999987632
Q ss_pred CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004739 156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
.....|.+.|+++.|.+.- ...|++|+.||.|.+|+......+..+
T Consensus 77 ----------------------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl----------- 123 (362)
T KOG0294|consen 77 ----------------------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL----------- 123 (362)
T ss_pred ----------------------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-----------
Confidence 3334577899999999862 128999999999999999988665554
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+|.+. |+.++++|.|++-++.+.|+.++.||+-.++
T Consensus 124 ---------K~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 124 ---------KAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ---------cccccc-cceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 667774 9999999999999999999999999998865
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-23 Score=188.36 Aligned_cols=264 Identities=17% Similarity=0.199 Sum_probs=205.2
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--- 84 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~--- 84 (732)
.++.+.+++||++.|.|++.+-+.++|+||+.|.++++||+.+|+++..+ .-..+|..+.|++. |++++.+..
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~~--gn~~l~~tD~~m 116 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW--KTNSPVKRVDFSFG--GNLILASTDKQM 116 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe--ecCCeeEEEeeccC--CcEEEEEehhhc
Confidence 56788899999999999999999999999999999999999999999998 45678999999999 477766643
Q ss_pred --CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 85 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 85 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
.+.|.++|++..... ....+|...+..+...++.+.|.|-+ .+|++|.+||.|.+||+++++..
T Consensus 117 g~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---------- 182 (327)
T KOG0643|consen 117 GYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---------- 182 (327)
T ss_pred CcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee----------
Confidence 467999999854321 12235677888888999999999955 89999999999999999998632
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
+.....|...|+.|.++++ ..++++++.|.+-++||.++.+.++++.
T Consensus 183 --------------v~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~------------------ 229 (327)
T KOG0643|consen 183 --------------VDSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYT------------------ 229 (327)
T ss_pred --------------eechhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEee------------------
Confidence 2223346669999999999 7899999999999999999987665542
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecCCe--EEEEECCCCCCcceeeec--CCCCceeeeccCCCCccCCCCCCccCCCc
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEH--VYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLELQPPIHDFLQTN 318 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (732)
...||++.+++|...+++.|+...- |.-=+.+.++-...++.. .+. -...++|=.++.+++|+|+|
T Consensus 230 ----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE------igrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 230 ----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE------IGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred ----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH------hccccccccCcceeEECCCC
Confidence 1236999999998888877765322 222222222222111100 000 12567888999999999999
Q ss_pred cccccccccCcchhhHH
Q 004739 319 IRVRGEVATGLGKCRML 335 (732)
Q Consensus 319 ~~~~~~~~~~~d~~~~l 335 (732)
+..+ +++.|+.+++
T Consensus 300 ksYs---SGGEDG~VR~ 313 (327)
T KOG0643|consen 300 KSYS---SGGEDGYVRL 313 (327)
T ss_pred cccc---cCCCCceEEE
Confidence 9999 9999999998
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-22 Score=183.13 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=129.4
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
..+.+ ..-.+.|+++.|+++ |.++++++.|.++++||...+. ++.++..+.-.+..+.|.... +.+
T Consensus 6 ~ak~f-~~~~~~i~sl~fs~~--G~~litss~dDsl~LYd~~~g~----------~~~ti~skkyG~~~~~Fth~~-~~~ 71 (311)
T KOG1446|consen 6 PAKVF-RETNGKINSLDFSDD--GLLLITSSEDDSLRLYDSLSGK----------QVKTINSKKYGVDLACFTHHS-NTV 71 (311)
T ss_pred ccccc-ccCCCceeEEEecCC--CCEEEEecCCCeEEEEEcCCCc----------eeeEeecccccccEEEEecCC-ceE
Confidence 33444 345778999999999 6999999999999999998743 367777777788888887744 555
Q ss_pred EEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 133 WSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 133 ~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
+.++. |.+||.-++.+.+ .+.-.++|...|.+++.+|- +..+++++.|++||
T Consensus 72 i~sStk~d~tIryLsl~dNk-------------------------ylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D~tvr 125 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNK-------------------------YLRYFPGHKKRVNSLSVSPK-DDTFLSSSLDKTVR 125 (311)
T ss_pred EEccCCCCCceEEEEeecCc-------------------------eEEEcCCCCceEEEEEecCC-CCeEEecccCCeEE
Confidence 55555 7899999998877 45556789999999999998 58999999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+||++..+....+. . . .-..++|+|+|-++|++.....|++||++.
T Consensus 126 LWDlR~~~cqg~l~-------------------~--~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 126 LWDLRVKKCQGLLN-------------------L--S--GRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred eeEecCCCCceEEe-------------------c--C--CCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 99999654322211 0 0 123479999999999999888999999998
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=216.97 Aligned_cols=224 Identities=19% Similarity=0.282 Sum_probs=178.7
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
+.-.-++++.++||.+.|..|.||.+ ++|++++.|.+||||++...+|++.| .|.+-|+|++|+|.. +++|++|+-
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvD-DryFiSGSL 430 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVD-DRYFISGSL 430 (712)
T ss_pred ccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccC-CCcEeeccc
Confidence 33445788999999999999999976 48999999999999999999999999 799999999999975 699999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
||.|+||++... .+.....-..-|++++|.|+ ++..+.|+.+|.+++|++...+... .
T Consensus 431 D~KvRiWsI~d~-----------~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~----------~ 488 (712)
T KOG0283|consen 431 DGKVRLWSISDK-----------KVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVS----------D 488 (712)
T ss_pred ccceEEeecCcC-----------eeEeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEE----------e
Confidence 999999999852 24555555689999999996 5999999999999999998765321 0
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
..+.+..+. ...+. .|+++.|.|.....+++.+.|..|||||.+....+.++..
T Consensus 489 ~~I~~~~~K------k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG------------------- 542 (712)
T KOG0283|consen 489 FHIRLHNKK------KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG------------------- 542 (712)
T ss_pred eeEeeccCc------cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc-------------------
Confidence 111111111 11123 7999999998777788889999999999988776655521
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.+....-....|+.||++|++++.|..|+||++...
T Consensus 543 ~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 543 FRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 111222456789999999999999999999998764
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=2.4e-24 Score=204.60 Aligned_cols=253 Identities=21% Similarity=0.261 Sum_probs=197.7
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
+..+.+.+.+|.|-.++|+.+.|.++++++++++.|+.+++|++...+...++ .+|++.|+++.|.... ..+++|+.
T Consensus 205 ~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~--~~vVsgs~ 281 (459)
T KOG0288|consen 205 LGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSH--SRVVSGSA 281 (459)
T ss_pred ccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccc--cceeeccc
Confidence 44556678899999999999999999999999999999999999999999999 7999999999999874 45999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
|.+|++||+... .| ..+.. -...++.|...+ ..+++|..|+.|++||++.....
T Consensus 282 DRtiK~WDl~k~--~C--------~kt~l-~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~------------ 335 (459)
T KOG0288|consen 282 DRTIKLWDLQKA--YC--------SKTVL-PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKT------------ 335 (459)
T ss_pred cchhhhhhhhhh--he--------ecccc-ccccccceEecc---eeeeecccccceEEEeccCCcee------------
Confidence 999999999862 22 33322 234566777653 67889999999999999987632
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
...+. .+.|+++..+++ +..+.+++.|.++.+.|+++.+....+... .
T Consensus 336 -------------~sv~~-gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~~sA~-----------------g 383 (459)
T KOG0288|consen 336 -------------RSVPL-GGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQTFSAE-----------------G 383 (459)
T ss_pred -------------eEeec-CcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEEeecc-----------------c
Confidence 11111 228999999998 778888899999999999987655443211 1
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccc
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE 324 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 324 (732)
......++.+.|||++.|+++|+.||.|+||++.+++...+....... ..+.+++|.|.|.++.
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~--------------~aI~s~~W~~sG~~Ll-- 447 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN--------------AAITSLSWNPSGSGLL-- 447 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC--------------cceEEEEEcCCCchhh--
Confidence 111223889999999999999999999999999998765544332221 2567777888888888
Q ss_pred cccCcchhhHH
Q 004739 325 VATGLGKCRML 335 (732)
Q Consensus 325 ~~~~~d~~~~l 335 (732)
+++.+....+
T Consensus 448 -sadk~~~v~l 457 (459)
T KOG0288|consen 448 -SADKQKAVTL 457 (459)
T ss_pred -cccCCcceEe
Confidence 7777777666
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=8.8e-23 Score=198.54 Aligned_cols=452 Identities=15% Similarity=0.148 Sum_probs=272.1
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-------
Q 004739 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA------- 86 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg------- 86 (732)
.++|+.-.. .+-+-|.|..+.-.. +-+.+++.+...+.. + .+|...|.|+..+|+. -.+++|-.-|
T Consensus 61 gYRG~dcR~-Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr~-y-~GH~ddikc~~vHPdr--i~vatGQ~ag~~g~~~~ 133 (626)
T KOG2106|consen 61 GYRGVDCRN-NLYLLPTGELVYFVA--AVGVLYNWEERSQRH-Y-LGHNDDIKCMAVHPDR--IRVATGQGAGTSGRPLQ 133 (626)
T ss_pred eecceeeec-eeEEccCccEEEEec--cEEEEEeehhhhccc-c-cCCCCceEEEeecCCc--eeeccCcccccCCCcCC
Confidence 344544333 255667776544332 235566664433322 2 5999999999999983 4566554333
Q ss_pred -cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC-cEEEEE--eCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 87 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSA--SEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 87 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~-~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
.+++||..+.+ -++.+......|++++|++.++ .++... +.+..+.+||...+.....
T Consensus 134 phvriWdsv~L~----------TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------- 195 (626)
T KOG2106|consen 134 PHVRIWDSVTLS----------TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------- 195 (626)
T ss_pred Ceeeecccccce----------eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc--------
Confidence 49999966422 2555556677899999998544 444332 4455788999988763311
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
....+..|..+.|.|.+.+++++++ .+.+.+|+++.+...++.. .|
T Consensus 196 -----------------vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~----------~f------ 241 (626)
T KOG2106|consen 196 -----------------VKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQG----------IF------ 241 (626)
T ss_pred -----------------ceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEee----------cc------
Confidence 1112336788999999887777776 5789999998775433221 11
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
.++....|.+++|.++|. +++|..+|.|.||+..+.+.....+ .|+..+.++....+|..+
T Consensus 242 -ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~----------------aH~ggv~~L~~lr~Gtll- 302 (626)
T KOG2106|consen 242 -EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH----------------AHDGGVFSLCMLRDGTLL- 302 (626)
T ss_pred -ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee----------------ecCCceEEEEEecCccEe-
Confidence 112223699999999998 8999999999999986633222211 444555566666666555
Q ss_pred cccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHH
Q 004739 323 GEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNA 402 (732)
Q Consensus 323 ~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 402 (732)
++..|+.+.+ |+-.-.+ . +.. . -|+.. +.+|
T Consensus 303 ---SGgKDRki~~-----Wd~~y~k----~--------r~~--e-lPe~~----------G~iR---------------- 333 (626)
T KOG2106|consen 303 ---SGGKDRKIIL-----WDDNYRK----L--------RET--E-LPEQF----------GPIR---------------- 333 (626)
T ss_pred ---ecCccceEEe-----ccccccc----c--------ccc--c-Cchhc----------CCee----------------
Confidence 4566666655 4411000 0 000 0 00000 0000
Q ss_pred hcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Q 004739 403 RRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRV 482 (732)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~ 482 (732)
.++ +. +..|..+-..+.+..-. .+++ +
T Consensus 334 ---------------------------------tv~--e~-----------~~di~vGTtrN~iL~Gt------~~~~-f 360 (626)
T KOG2106|consen 334 ---------------------------------TVA--EG-----------KGDILVGTTRNFILQGT------LENG-F 360 (626)
T ss_pred ---------------------------------EEe--cC-----------CCcEEEeeccceEEEee------ecCC-c
Confidence 000 00 00000000000000000 0000 0
Q ss_pred cccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCC
Q 004739 483 LSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANG 560 (732)
Q Consensus 483 ~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 560 (732)
. .+...|.+. .++..|+- ..+++.++|+.+.+|+ +.++.. ...-.+++.++.|+|-
T Consensus 361 ~--~~v~gh~delwgla~hps~------------------~q~~T~gqdk~v~lW~-~~k~~w-t~~~~d~~~~~~fhps 418 (626)
T KOG2106|consen 361 T--LTVQGHGDELWGLATHPSK------------------NQLLTCGQDKHVRLWN-DHKLEW-TKIIEDPAECADFHPS 418 (626)
T ss_pred e--EEEEecccceeeEEcCCCh------------------hheeeccCcceEEEcc-CCceeE-EEEecCceeEeeccCc
Confidence 0 012334444 56667776 8899999999999999 344433 2344677889999999
Q ss_pred CCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcC-cccEEEEEec-Cc
Q 004739 561 SSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ-TGRLIKMLLG-DE 638 (732)
Q Consensus 561 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~-tg~~~~~l~g-H~ 638 (732)
| .+|.++..+-=-+.+.++ .....-|+. ..++..+.| +|||.+||.||.|+.|+||-+. +|+.+..+.- |-
T Consensus 419 g-~va~Gt~~G~w~V~d~e~----~~lv~~~~d-~~~ls~v~y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 419 G-VVAVGTATGRWFVLDTET----QDLVTIHTD-NEQLSVVRY-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred c-eEEEeeccceEEEEeccc----ceeEEEEec-CCceEEEEE-cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 9 888885443323344333 233334443 333555555 9999999999999999999986 4555555544 34
Q ss_pred ccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004739 639 AVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI 674 (732)
Q Consensus 639 ~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~ 674 (732)
..|+.|.||+|+++|.|-|.|--|-.|.....+...
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccc
Confidence 889999999999999999999999999666555543
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.3e-22 Score=198.52 Aligned_cols=217 Identities=18% Similarity=0.247 Sum_probs=157.3
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
+...++||++.|.+|...|.|.+||+|+.||+||||.+.+|.|+.++ ...+.|.|++|+|..+ ..++..+....+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~-~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSD-LCVLAVAVGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCC-ceeEEEEecCceEE
Confidence 44568899999999999999999999999999999999999999998 3567899999999863 44444444455666
Q ss_pred EEcCCCCCC-------CC--CCCC------------------CCCceeeccccCceeEEEEecCCCcEEEEEeCC---Cc
Q 004739 91 FNLSRFSGR-------GL--DDNA------------------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT 140 (732)
Q Consensus 91 wd~~~~~~~-------~~--~~~~------------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g~ 140 (732)
-+..-+... .+ ..+. ..-+.....|...|+.+.|+..| .+|++...+ ..
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKS 547 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCCcce
Confidence 655432100 00 0000 01123445688899999999954 899887654 46
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~ 220 (732)
|.|.++...... .......+.|.++.|+|. ..+|++++. ..|||||+.....+
T Consensus 548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs-~p~lfVaTq-~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPS-KPYLFVATQ-RSVRIYDLSKQELV 600 (733)
T ss_pred EEEEeccccccc-------------------------CchhhcCCceeEEEecCC-CceEEEEec-cceEEEehhHHHHH
Confidence 888888776521 122234457889999998 556666664 57999999875444
Q ss_pred cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+++. .+ ..+|..++++|.|..|++|+.|+.++.||+.-
T Consensus 601 KkL~-------------------tg--~kwiS~msihp~GDnli~gs~d~k~~WfDldl 638 (733)
T KOG0650|consen 601 KKLL-------------------TG--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDL 638 (733)
T ss_pred HHHh-------------------cC--CeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence 3331 11 12699999999999999999999999999876
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.3e-22 Score=183.19 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=131.8
Q ss_pred EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe-cCCCcEEEE
Q 004739 56 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVWS 134 (732)
Q Consensus 56 ~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-p~~~~~l~s 134 (732)
.+..+|..-|.++.|.+. |+.+++|+.|++|+|||.+..++. +.+....+.|.+.|..+.|. |.-++.+|+
T Consensus 7 pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred ccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceEEE
Confidence 444689999999999999 699999999999999998765443 35677889999999999995 455689999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEE
Q 004739 135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYD 213 (732)
Q Consensus 135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd 213 (732)
++.|+++.||.-...... .+. ...............|+++.|.|.. |-.||+++.||.||||+
T Consensus 79 cS~Drtv~iWEE~~~~~~-----~~~-----------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEE-----AHG-----------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred EecCCceeeeeecccccc-----ccc-----------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 999999999986422210 000 0111223344556689999999964 56799999999999999
Q ss_pred CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC---CCEEEEEecC-----CeEEEEECCC
Q 004739 214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSG-----EHVYLMDVNH 279 (732)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~---g~~l~~~~~d-----g~v~iwd~~~ 279 (732)
......+..+.........+ . +.+....+..|+.|+|. .++|++|+.+ +.++||....
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~-------~-pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVI-------D-PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred cCCccccccchhhhhhhhcc-------C-CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 87665554443221110000 0 01222225778888873 4667777665 3566665444
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3.5e-23 Score=199.63 Aligned_cols=243 Identities=16% Similarity=0.192 Sum_probs=190.3
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
++|.+.|.+++.|+||++||+|+.|..|.||+..+.+.++.+ .+|.+.|.+++|-... ..+++++.|+.|++|++..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCc--cceeeeecCCceEEEehhH
Confidence 489999999999999999999999999999999999999998 8999999999999875 7899999999999999985
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
. ..+.++.+|.+.|.+|.... -.+.+-.|+.|+++++|++...... +
T Consensus 276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-------------i--------- 322 (479)
T KOG0299|consen 276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-------------I--------- 322 (479)
T ss_pred h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-------------e---------
Confidence 3 34788999999999998776 3366666779999999999554321 1
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
..++...+-|++|-.+ ..+++|+.+|.|.+|++.+.+++........... .. ...++ ..+|++++
T Consensus 323 ----frg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~-------~~-~~~~~-~~Witsla 387 (479)
T KOG0299|consen 323 ----FRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP-------EL-DPVNG-NFWITSLA 387 (479)
T ss_pred ----eeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccC-------Cc-ccccc-ccceeeeE
Confidence 1234558889999875 5899999999999999999988876543321110 00 00111 24899999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 256 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
..|...++++|+.+|.|++|-+..+-....... .+ ....-|++++|+++|+.+.
T Consensus 388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~------------~l-s~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY------------SL-SLVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred ecccCceEEecCCCCceEEEEecCCccccceee------------ec-ccccEEEEEEEccCCCEEE
Confidence 999999999999999999999998643222111 01 1334577788899988554
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.3e-23 Score=206.85 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=183.2
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccCCCcCeEEEEE-ecCCCCCEEEEEECCCcE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAEV 88 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~-s~~~~g~~l~s~~~dg~i 88 (732)
+..++.|.+.|+.++...+|+.|+++|.|-+|++|+...+ -+..++ ..|+.-|.|+++ .++ ..+++||+-|+.|
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~--~~lvaSgGLD~~I 142 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKN--NELVASGGLDRKI 142 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccC--ceeEEecCCCccE
Confidence 5667889999999999999999999999999999999877 577777 789999999999 666 4899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
++||+.++........+......+. ++..+|++++.++.+ ..|++|+..+-|++||.++.+.
T Consensus 143 flWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~k---------------- 205 (735)
T KOG0308|consen 143 FLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKK---------------- 205 (735)
T ss_pred EEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccc----------------
Confidence 9999997643222222223344444 899999999999954 8999999999999999999873
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
+....+|...|..+-.+++ |..++++++||+|++||+... +|+.++ ..|.
T Consensus 206 ---------imkLrGHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQ-------------rCl~T~-------~vH~ 255 (735)
T KOG0308|consen 206 ---------IMKLRGHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQ-------------RCLATY-------IVHK 255 (735)
T ss_pred ---------eeeeeccccceEEEEEcCC-CCeEeecCCCceEEeeecccc-------------ceeeeE-------Eecc
Confidence 2334478889999999999 899999999999999999876 454444 5576
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+ |+++..+|+=..+++|+.||.|+.=|+++..
T Consensus 256 e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 256 EG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred Cc-eEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 64 9999999999999999999999999999853
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.5e-22 Score=196.61 Aligned_cols=212 Identities=18% Similarity=0.283 Sum_probs=166.5
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEc-cCCCcCeEEEEEecCCCCCEEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE-TGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
+..+++++| .|..-|.++++|...+++.||+. |.|+|||+.... .+..+. ..-.+-|.++...|+ |+.|++|
T Consensus 408 rharq~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivG 483 (705)
T KOG0639|consen 408 RHARQINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVG 483 (705)
T ss_pred chHHhhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEec
Confidence 455677777 48999999999999999999986 789999987432 222220 124567899999999 5999999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
+.-.++.|||+..+.... ...+..-.-...+++.+||. ++.++|..||.|.|||+.+..
T Consensus 484 GeastlsiWDLAapTpri--------kaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~------------ 542 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQT------------ 542 (705)
T ss_pred cccceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccce------------
Confidence 999999999999765332 23333334567889999955 888899999999999998765
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
.+....+|...+.||.++++ |..|-+|+-|++||.||++.++++...
T Consensus 543 -------------~VrqfqGhtDGascIdis~d-GtklWTGGlDntvRcWDlregrqlqqh------------------- 589 (705)
T KOG0639|consen 543 -------------LVRQFQGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQH------------------- 589 (705)
T ss_pred -------------eeecccCCCCCceeEEecCC-CceeecCCCccceeehhhhhhhhhhhh-------------------
Confidence 34556788889999999999 889999999999999999998765432
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.....|.++..+|++.+|++|-.++.|.|-....
T Consensus 590 ---dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 590 ---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ---hhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 1122599999999999999999988887765544
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.8e-22 Score=177.63 Aligned_cols=221 Identities=18% Similarity=0.195 Sum_probs=174.9
Q ss_pred cccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 10 SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+++.+|+||.+||..++|.. -|.+||++++||.|.||.-.+++. .+.. ..|...|++++|.|.+.|-.|++++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCC
Confidence 67889999999999999976 799999999999999999887743 3344 579999999999999878899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---C----------CcEEEEEeCCCcEEEEECCCCCCC
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---N----------PHVVWSASEDGTLRQHDFRQGSSC 152 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~----------~~~l~s~s~dg~i~vwd~~~~~~~ 152 (732)
|.|.|.+.+...+- .......+|.-.|+++.|.|. + .+.|++|+.|..|+||+....+-.
T Consensus 126 G~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred CcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence 99999999865222 224567789999999999984 1 146999999999999999876411
Q ss_pred CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC---CCEEEEEeCCCeEEEEECCCCCCCcccccCCCC
Q 004739 153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 229 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~ 229 (732)
.-.++.+|...|..++|.|.- ...|++++.||+|.||-.+... .....
T Consensus 199 -----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~--e~wk~---- 249 (299)
T KOG1332|consen 199 -----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY--EPWKK---- 249 (299)
T ss_pred -----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc--Ccccc----
Confidence 122356788899999999974 3479999999999999876321 11100
Q ss_pred CCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 230 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+. .....+..+.|++.|++|++++.|+.|.+|.-..
T Consensus 250 -tll~-----------~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 250 -TLLE-----------EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred -cccc-----------cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 0000 0122599999999999999999999999997554
No 121
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.5e-21 Score=177.46 Aligned_cols=222 Identities=15% Similarity=0.261 Sum_probs=167.5
Q ss_pred eeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe------------eE--EEEccCCCcCeEEEEEecCCCCCEE
Q 004739 15 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK------------LL--HSIETGHSANVFCTKFVPETSDELV 79 (732)
Q Consensus 15 l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~------------~~--~~~~~~h~~~V~~~~~s~~~~g~~l 79 (732)
-+.|.+.|+++...+ .|+++++|+.||.|.|||+++.. ++ ..-..+|+-.|..+.|-|-. ..++
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Ccee
Confidence 346999999999998 68999999999999999997532 11 11124788999999999974 3689
Q ss_pred EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004739 80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 157 (732)
.+++.|.+++|||..+.+. ...++ -.+.|.+-+++|-.. .++|+|..|-.|++-|+..+..
T Consensus 118 tssSFDhtlKVWDtnTlQ~----------a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~------ 180 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE----------AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF------ 180 (397)
T ss_pred ecccccceEEEeeccccee----------eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc------
Confidence 9999999999999998542 22222 356777778877332 4778888888999999998862
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCC-CCCCcccc
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRM-SPPPCVNY 235 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~-~~~~~~~~ 235 (732)
-..+.+|...|.++.|+|.....|++|+.||.||+||++.. ..+..+.... ..++.++
T Consensus 181 -------------------sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~- 240 (397)
T KOG4283|consen 181 -------------------SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK- 240 (397)
T ss_pred -------------------eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-
Confidence 23456788899999999997778999999999999999865 2222222111 1111111
Q ss_pred ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
....|.+ .+++++|..++.++++.+.|..+++|+..++.
T Consensus 241 ------~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 241 ------TNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ------ccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence 1133444 69999999999999999999999999998854
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.8e-23 Score=210.61 Aligned_cols=222 Identities=16% Similarity=0.274 Sum_probs=176.7
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC---CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 21 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 21 ~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~---~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.+..+.|+. +.++|||++..|.|.+||+.. .+.+..| ..|+..|+++.|++.. ..+|+||+.||+|++||++..
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence 344567774 567999999999999999987 5555666 7899999999999987 589999999999999999975
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
+. ..++.+....|..+.|+|..++.|+++.+.|.+.+||++....+
T Consensus 167 ~S----------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------ 212 (839)
T KOG0269|consen 167 KS----------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------ 212 (839)
T ss_pred cc----------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence 43 56677788999999999988899999999999999999998743
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
......|.++|.++.|+|+ +.+|||||.|++|+|||+.+.+.... .++ +...++..|.|
T Consensus 213 ~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~--------~tI------------nTiapv~rVkW 271 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPK--------HTI------------NTIAPVGRVKW 271 (839)
T ss_pred HHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccce--------eEE------------eecceeeeeee
Confidence 3344568889999999997 88999999999999999986543211 111 22336999999
Q ss_pred cCCCCE-EEEEec--CCeEEEEECCCCCCcceee-ecCCCCceeeec
Q 004739 257 SPNGEE-VLLSYS--GEHVYLMDVNHAGGRAMRY-TVGDASKIMSFT 299 (732)
Q Consensus 257 sp~g~~-l~~~~~--dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~ 299 (732)
-|..++ |++++. |-.|+|||++.+-.+...+ .|.+....++|.
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~ 318 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD 318 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc
Confidence 998765 444443 7899999999977666544 455555555554
No 123
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=9e-21 Score=193.59 Aligned_cols=186 Identities=11% Similarity=0.163 Sum_probs=131.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
+..+++++.|+.|++||+.+++.+..+ ..+. .+.+++|+|++ ..+ ++++.++.|++||+.++.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~~-~~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~----------~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVGQ-RPRGITLSKDG--KLLYVCASDSDTIQVIDLATGEV----------I 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECCC-CCCceEECCCC--CEEEEEECCCCeEEEEECCCCcE----------E
Confidence 357889999999999999999988888 4443 46789999994 655 6677889999999986421 3
Q ss_pred eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
..+..+. .+..++|+|++..++++++.++.|++||+.+.+.. ..+. ....+.+
T Consensus 67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~~------------~~~~~~~ 119 (300)
T TIGR03866 67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEIP------------VGVEPEG 119 (300)
T ss_pred EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEee------------CCCCcce
Confidence 3344333 35678999976445556667899999999875421 0000 0113567
Q ss_pred EEecCCCCCEEEEEeCCC-eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-
Q 004739 190 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY- 267 (732)
Q Consensus 190 i~~~~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~- 267 (732)
++|+|+ +.+++++..++ .+.+||.++.+.+.... .+ . .+..++|+|+|++|++++
T Consensus 120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~-------------------~~--~-~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVL-------------------VD--Q-RPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------cC--C-CccEEEECCCCCEEEEEcC
Confidence 999998 77888887764 57778987654322110 01 1 256789999999886655
Q ss_pred cCCeEEEEECCCC
Q 004739 268 SGEHVYLMDVNHA 280 (732)
Q Consensus 268 ~dg~v~iwd~~~~ 280 (732)
.++.|++||+.++
T Consensus 177 ~~~~v~i~d~~~~ 189 (300)
T TIGR03866 177 IGGTVSVIDVATR 189 (300)
T ss_pred CCCEEEEEEcCcc
Confidence 5899999999874
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.7e-22 Score=192.33 Aligned_cols=244 Identities=19% Similarity=0.317 Sum_probs=185.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+.+ |.+|+||+.||.|.+|.+...-.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeecc
Confidence 578999999999999999989999999999999999988 799999999999999 59999999999999998864211
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.. +.....+++.+..|+-+|+++...+.+ ..+++|+|.|.++++||+..+..+. . +
T Consensus 158 a~-~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--------------t--------i 214 (476)
T KOG0646|consen 158 AD-NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--------------T--------I 214 (476)
T ss_pred cc-cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE--------------E--------E
Confidence 11 111347789999999999999988742 3588999999999999999886431 0 1
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc--c-ccCCCCCCccccccccccccCCCcc-ccEEE
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--C-QKRMSPPPCVNYFCPMHLSEHGRSS-LHLTH 253 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~ 253 (732)
.....+.+++.+|. +..+++|+.+|.|.+.++........ . +........++.+ .||.+ .+|+|
T Consensus 215 ----~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-------~Gh~~~~~ITc 282 (476)
T KOG0646|consen 215 ----TFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-------VGHENESAITC 282 (476)
T ss_pred ----ecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-------ccccCCcceeE
Confidence 12237899999998 78999999999999999876542110 0 0000001111111 45554 46999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
++++-||..|++|+.||+|+|||+.+.+....+.....++..+.+.|
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 99999999999999999999999998654444443445555555544
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-21 Score=189.99 Aligned_cols=196 Identities=15% Similarity=0.142 Sum_probs=152.5
Q ss_pred CEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004739 32 SLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 110 (732)
Q Consensus 32 ~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 110 (732)
.+++++. ....|.+|.+......... .--.++|.|++-+|. |.+|+.|...|.|++|.+.++ ..+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG----------~LL~ 117 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSG----------ILLN 117 (476)
T ss_pred hheeeecccCccccccccCchhhhhhh-cccccceeeeecCCC--ceEEEeecccCcEEEEEeccc----------cHHH
Confidence 3566554 4567899998766554422 245688999999999 588888889999999999975 3377
Q ss_pred eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004739 111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 190 (732)
Q Consensus 111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 190 (732)
.+.+|-..|+++.|+-++ .+|+|||.||.|.+|.+..--.. .......++....+|.-+|+++
T Consensus 118 v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a----------------~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSA----------------DNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccc----------------ccCCCccceeeeccCcceeEEE
Confidence 889999999999999854 89999999999999998653211 1111233455566788899999
Q ss_pred EecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC
Q 004739 191 DISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 269 (732)
Q Consensus 191 ~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d 269 (732)
...+.+ ..++++++.|.++++||+..+..+.++.. ..++.+++++|-++.+++|+.+
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f----------------------p~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF----------------------PSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEec----------------------CCcceeEEEcccccEEEecCCc
Confidence 887642 35899999999999999999876654421 1259999999999999999999
Q ss_pred CeEEEEECCC
Q 004739 270 EHVYLMDVNH 279 (732)
Q Consensus 270 g~v~iwd~~~ 279 (732)
|.|.+.++..
T Consensus 239 G~I~~~~~~~ 248 (476)
T KOG0646|consen 239 GKIFQNLLFK 248 (476)
T ss_pred ceEEeeehhc
Confidence 9999998876
No 126
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=182.84 Aligned_cols=174 Identities=21% Similarity=0.343 Sum_probs=137.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC------CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~------~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
-..+-+.+|.+.|+++.|+.++++||+|+.|..++||++. +.+.+......|...|.|++|... ..++++|.
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~ 124 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGE 124 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCC
Confidence 3455677999999999999999999999999999999975 345666665578899999999987 48999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
.+++|...|+++.+. +..+. ...+.|..+..+|.+ +.|++.+.++.|.+||.+.......
T Consensus 125 ~~~~VI~HDiEt~qs----------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~------- 186 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQS----------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPIS------- 186 (609)
T ss_pred CcceeEeeeccccee----------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCc-------
Confidence 999999999997432 22222 223489999999975 8999999999999999988763211
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
...+.......+.+.|+|..+.+|++.+..+.+-+||++..+
T Consensus 187 ---------------~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 187 ---------------LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred ---------------eeeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence 111112233667889999988999999999999999998643
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.8e-21 Score=196.89 Aligned_cols=160 Identities=15% Similarity=0.186 Sum_probs=126.0
Q ss_pred EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeE-EEEecCCCcEE
Q 004739 54 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-LAVEVGNPHVV 132 (732)
Q Consensus 54 ~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l 132 (732)
.+.+ .+|...|..+++.+. ..+++++.||++++|+-....- .....+.+|.+-|.. +++.+.+.-.+
T Consensus 7 s~~l-~gH~~DVr~v~~~~~---~~i~s~sRd~t~~vw~~~~~~~--------l~~~~~~~~~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 7 SHEL-EGHKSDVRAVAVTDG---VCIISGSRDGTVKVWAKKGKQY--------LETHAFEGPKGFIANSICYAESDKGRL 74 (745)
T ss_pred EEEe-ccCccchheeEecCC---eEEeecCCCCceeeeeccCccc--------ccceecccCcceeeccceeccccCcce
Confidence 3445 799999999998876 6899999999999999864322 234667778877777 88876444568
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
++|+.|.+|.+|.+.+.. ++....+|...|.+++...+ +. +++|+.|.++++|
T Consensus 75 ~~g~~D~~i~v~~~~~~~-------------------------P~~~LkgH~snVC~ls~~~~-~~-~iSgSWD~TakvW 127 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAE-------------------------PLYTLKGHKSNVCSLSIGED-GT-LISGSWDSTAKVW 127 (745)
T ss_pred EeecccceEEEEecCCCC-------------------------chhhhhccccceeeeecCCc-Cc-eEecccccceEEe
Confidence 899999999999988776 45566788889999987776 44 9999999999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEE
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd 276 (732)
-..... ..+ .+|.. .|+++++-|++ .+++|+.|.+|++|.
T Consensus 128 ~~~~l~--~~l--------------------~gH~a-sVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 128 RIGELV--YSL--------------------QGHTA-SVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred cchhhh--ccc--------------------CCcch-heeeeeecCCC-cEEeccCcceeeecc
Confidence 775432 111 67776 59999999988 689999999999994
No 128
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.9e-21 Score=207.34 Aligned_cols=237 Identities=20% Similarity=0.307 Sum_probs=182.4
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------CeeEEEEccCCCcCeEEEEEe
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV 71 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~------------------~~~~~~~~~~h~~~V~~~~~s 71 (732)
+.+.++..|.+.|+|+.|+|||++||+|++|+.|.||+... .+++..+ .+|+..|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence 45667788999999999999999999999999999998762 1256666 7999999999999
Q ss_pred cCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004739 72 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 151 (732)
Q Consensus 72 ~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 151 (732)
|+ +.+|++++.|++|.|||..+. +.+..+++|...|..+.|.|-+ ++||+-+.|++|++|++.+-..
T Consensus 139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEccccee
Confidence 98 599999999999999999985 3478999999999999999955 9999999999999999766322
Q ss_pred CCCC---CC------------CCcc------------cceEEeeccCCccccccCCCCCccceEEEEecCC------C--
Q 004739 152 CPPA---GS------------SHQE------------CRNILLDLRCGAKRSLADPPKQTLSLKSCDISST------R-- 196 (732)
Q Consensus 152 ~~~~---~~------------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~-- 196 (732)
...+ +. -.++ ....+--++.+....-....+|..++.++.|+|. .
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence 1000 00 0000 0001111112233334456788999999999873 0
Q ss_pred ----CC----EEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004739 197 ----PH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 197 ----~~----~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
++ .+|+|+.|++|.||.....+++.... .-.+..|..++|+|||-.|++++.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--------------------~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--------------------NLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--------------------hhhcCceeeeeEcCCCCeEEEEec
Confidence 11 68899999999999988777654431 111225999999999999999999
Q ss_pred CCeEEEEECCCC
Q 004739 269 GEHVYLMDVNHA 280 (732)
Q Consensus 269 dg~v~iwd~~~~ 280 (732)
||+|.++.+...
T Consensus 346 DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 346 DGTVALIHFEEK 357 (942)
T ss_pred CCeEEEEEcchH
Confidence 999999998873
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.4e-21 Score=184.50 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=158.5
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEEEEEcCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~~~ 95 (732)
.++|+++.|+|...+|++++.|++++||.+.. ...+..+ .--..+|.+..|.|++ . .+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~G--~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPNG--HSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCCC--ceEEEecccceEEEEeeccc
Confidence 58999999999999999999999999998763 3345555 3457899999999994 5 899999999999999987
Q ss_pred CCCCCCCCCCCCCceeecccc-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 96 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
.+.. .+..+.++. ..+..+.++|++ ++|+..+..|.|.+-...+++.+.
T Consensus 290 ak~~--------k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~--------------------- 339 (514)
T KOG2055|consen 290 AKVT--------KLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT--------------------- 339 (514)
T ss_pred cccc--------cccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh---------------------
Confidence 5432 244455544 356778889955 899999999999999988887431
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
.-...+.|..+.|+.+ ++.|++++.+|.|.+||++....+..+ .. .|.- .-+++
T Consensus 340 -----s~KieG~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~~~rf-------------~D-----~G~v--~gts~ 393 (514)
T KOG2055|consen 340 -----SFKIEGVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSCLHRF-------------VD-----DGSV--HGTSL 393 (514)
T ss_pred -----eeeeccEEeeEEEecC-CcEEEEEcCCceEEEEecCCcceEEEE-------------ee-----cCcc--ceeee
Confidence 1123457899999988 688888888999999999987444333 11 1111 24678
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCC
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+.+++|++|++|+..|.|-|||.++
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eecCCCceEEeccCcceEEEeccch
Confidence 8899999999999999999999877
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=182.44 Aligned_cols=216 Identities=20% Similarity=0.288 Sum_probs=168.5
Q ss_pred eeeccCCceeEEEEcCCC--CEEEEEeCCCcEEEEeCCC----------------CeeEEEEccCCCcCeEEEEEecCCC
Q 004739 14 ELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVPETS 75 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~----------------~~~~~~~~~~h~~~V~~~~~s~~~~ 75 (732)
..-+|.+.|+.+.-++-+ .+.|+-+..|.|.|||+.. .+.+.++ .+|...=++++|||-.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~- 223 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK- 223 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc-
Confidence 345688999998888754 5777778899999999752 3456777 7899888999999964
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 155 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 155 (732)
-..|+||..-+.|++|...++.-..- -..+.+|+..|-.++|+|.....|++||.||+|+|||++.+....
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd-------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~-- 294 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVD-------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA-- 294 (440)
T ss_pred ccccccCccccceEeeeeccCceeec-------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--
Confidence 35789998889999999987543321 345677999999999999988999999999999999999885220
Q ss_pred CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004739 156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 235 (732)
.+. ...|...|+-|+|+... .+||+|+.||+++|||+++.+.- ..+..
T Consensus 295 --------------------~~~-~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~----------~pVA~ 342 (440)
T KOG0302|consen 295 --------------------AVS-TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG----------QPVAT 342 (440)
T ss_pred --------------------eeE-eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC----------Cccee
Confidence 111 14567799999999984 49999999999999999976532 11222
Q ss_pred ccccccccCCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCCC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~~ 280 (732)
| ..|.. +|+++.|+|. ...|++++.|.+|.|||+.-.
T Consensus 343 f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 343 F-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred E-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 2 33444 7999999995 457888888999999998753
No 131
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=8e-22 Score=192.42 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=174.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc------------cCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~------------~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
..+|++++|++.|..|++.+....++|+|-. |..+..+. ++|...++|.+|+|.. .+.++||+.||
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~Dg 291 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDG 291 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCC
Confidence 4589999999999988887777899999954 43333331 5899999999999986 47899999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
+++|||+.....+.. ........+-.-+++.++|+|++ .+||+|+.||.|.+|+......-
T Consensus 292 tlRiWdv~~~k~q~q----Vik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~-------------- 352 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQ----VIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR-------------- 352 (641)
T ss_pred cEEEEecCCchhhee----EEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc--------------
Confidence 999999987543210 00001122445678999999965 78999999999999998543311
Q ss_pred eeccCCccccccCCCCCcc--ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 167 LDLRCGAKRSLADPPKQTL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
. .+.....|.. .|+|++|+++ |++|++-+.|+++++||++..+. |+..+...
T Consensus 353 ------p--~~~vk~AH~~g~~Itsi~FS~d-g~~LlSRg~D~tLKvWDLrq~kk------------pL~~~tgL----- 406 (641)
T KOG0772|consen 353 ------P--VMKVKDAHLPGQDITSISFSYD-GNYLLSRGFDDTLKVWDLRQFKK------------PLNVRTGL----- 406 (641)
T ss_pred ------c--ceEeeeccCCCCceeEEEeccc-cchhhhccCCCceeeeecccccc------------chhhhcCC-----
Confidence 0 0111112333 8999999999 89999999999999999997652 22221111
Q ss_pred CCccccEEEEEEcCCCCEEEEEec------CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCc
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL 305 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (732)
....+-+.++|||+.++|++|+. .|.+++||..+...++.+......+....|+|.+++.
T Consensus 407 -~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 407 -PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQI 472 (641)
T ss_pred -CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhe
Confidence 11114577999999999999965 4789999999987777776666667777788876554
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.2e-20 Score=172.68 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=125.8
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
..-.+.|.+++|||.. ..+++.++.|++||+|+++.. +.. .+ +....|.++|.+++|+.++ ..+++|+.|
T Consensus 24 ~pP~DsIS~l~FSP~~-~~~~~A~SWD~tVR~wevq~~-g~~------~~-ka~~~~~~PvL~v~Wsddg-skVf~g~~D 93 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQA-DNLLAAGSWDGTVRIWEVQNS-GQL------VP-KAQQSHDGPVLDVCWSDDG-SKVFSGGCD 93 (347)
T ss_pred CCcccchheeEecccc-CceEEecccCCceEEEEEecC-Ccc------cc-hhhhccCCCeEEEEEccCC-ceEEeeccC
Confidence 5677889999999954 477889999999999999863 221 12 5566799999999999865 888899999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~ 217 (732)
+.+++||+.+++.. ....|..+|..+.|-+.. ...|+||+.|.+|+.||++..
T Consensus 94 k~~k~wDL~S~Q~~--------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 94 KQAKLWDLASGQVS--------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred CceEEEEccCCCee--------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 99999999998632 122467789999987652 237899999999999999988
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.++.++..+. .++++.. -...++++..+..|.+|+++++
T Consensus 148 ~pv~t~~LPe----------------------RvYa~Dv--~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 148 NPVATLQLPE----------------------RVYAADV--LYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred Ceeeeeeccc----------------------eeeehhc--cCceeEEEecCCcEEEEEcCCC
Confidence 7776653211 2444433 3457899999999999999883
No 133
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=173.29 Aligned_cols=207 Identities=18% Similarity=0.268 Sum_probs=148.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------Ce-----eEEEEccCCCcCeEEEEEe-------cCCCCCEEEEE
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSS-------RK-----LLHSIETGHSANVFCTKFV-------PETSDELVVSG 82 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~-------~~-----~~~~~~~~h~~~V~~~~~s-------~~~~g~~l~s~ 82 (732)
...+.|+|||..|++-+.|..+++|++.. .. ....+.......|...+|- |+. .++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t--~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST--NLFAVS 129 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--ceeeec
Confidence 34678999999999999999999998741 10 1111111345668888886 443 689999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCCCcEEEEEC-CCCCCCCCCCCC
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGSS 158 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~dg~i~vwd~-~~~~~~~~~~~~ 158 (732)
+.+.-|++||.-+++.++. ...-.|.+ ...+++|+|++ ..|+ ++....|+++|+ +.+..+.....
T Consensus 130 sr~~PIh~wdaftG~lraS--------y~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c~vy~t- 198 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRAS--------YRAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDCPVYTT- 198 (406)
T ss_pred cccCceeeeeccccccccc--------hhhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCCcchhh-
Confidence 9999999999998765432 22223433 34689999977 5554 456689999999 44442210000
Q ss_pred CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004739 159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 238 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (732)
......+..+-+.+++|+|.+...+++|+....+-||.-....++..+
T Consensus 199 -----------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll--------------- 246 (406)
T KOG2919|consen 199 -----------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL--------------- 246 (406)
T ss_pred -----------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------------
Confidence 000122345578899999998889999999999999988877766554
Q ss_pred cccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 239 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
.||.+ .|+.+.|+++|+.|++|+. |..|..||++.
T Consensus 247 -----ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 247 -----GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred -----cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 66777 4999999999999999988 78999999988
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=164.52 Aligned_cols=213 Identities=22% Similarity=0.313 Sum_probs=163.3
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecC--CCCCEEEEEEC-CC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPE--TSDELVVSGAG-DA 86 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~--~~g~~l~s~~~-dg 86 (732)
-+-|.+.|+|.+|+|+|++||+|+.|.+|++.-++...+ -..+ .-|.+.|..++|..+ +.+.+|++++. |.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 346899999999999999999999999999987654322 1234 569999999999753 33567777653 66
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.|.+-|..++++ .+.+.+|++.|.++--- ++-.|++|+.|.+|++||++-.........
T Consensus 164 ~iy~tdc~~g~~----------~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~--------- 222 (350)
T KOG0641|consen 164 KIYITDCGRGQG----------FHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN--------- 222 (350)
T ss_pred eEEEeecCCCCc----------ceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC---------
Confidence 666667665433 78899999999887321 458999999999999999987653211000
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
......-....|.+++..|. |++|++|-.|....+||++.+++++.+ ..|
T Consensus 223 ---------~~~~~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq~f--------------------~ph 272 (350)
T KOG0641|consen 223 ---------DFHDGGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQRF--------------------HPH 272 (350)
T ss_pred ---------cccCCCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceeeee--------------------CCC
Confidence 00011112347899999999 899999999999999999998877655 445
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.. .|.++.|+|.-.|+++++.|..|++-|++..
T Consensus 273 sa-dir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 273 SA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred cc-ceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 55 5999999999999999999999999999863
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.9e-20 Score=192.50 Aligned_cols=209 Identities=13% Similarity=0.145 Sum_probs=165.3
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
.+|+.+-+.++|.|+|++|.+++.||.|++|+.... +....+ .-+...|.+++-.. .+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~s----~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACYS----NHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeecc----cceEEeeccceEEEeeCC
Confidence 369999999999999999999999999999987665 444444 23777788876543 589999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
.+.... .+...+-++++++|+. ++.++|.||.|-.|++-++.+...
T Consensus 85 s~~~~~----------iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~----------------------- 130 (933)
T KOG1274|consen 85 SGEEDT----------ILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ----------------------- 130 (933)
T ss_pred CCCccc----------eeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-----------------------
Confidence 754321 2333467899999998 558999999999999999887652
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
.....+|..+|.++.|+|. +++||+.+.||.|++||+.++.....+....+.. .......+..+
T Consensus 131 --~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-------------~~~~s~i~~~~ 194 (933)
T KOG1274|consen 131 --EKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-------------EFILSRICTRL 194 (933)
T ss_pred --heeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCccc-------------cccccceeeee
Confidence 2344578889999999999 8999999999999999999887665553221111 11112247889
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCC
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|+|+|..|++.+.|+.|.+|+..+
T Consensus 195 aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred eecCCCCeEEeeccCCeEEEEccCC
Confidence 9999998999999999999998887
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-21 Score=179.00 Aligned_cols=214 Identities=22% Similarity=0.343 Sum_probs=178.7
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC------C-----------------------------
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------S----------------------------- 50 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~------~----------------------------- 50 (732)
+++.+++..+.||.+.|+++.|++.+.++++++.|++..||... .
T Consensus 177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 45677888999999999999999999999999999999999721 0
Q ss_pred -C----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004739 51 -R----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125 (732)
Q Consensus 51 -~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 125 (732)
+ ..+..+ .+|.+.|.+..|... |+.+++++.|.+..+||++++ +++..+.||....+.+.-+
T Consensus 257 D~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 257 DGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNILTGHDSELTHCSTH 323 (481)
T ss_pred CCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceeccccCcchhccccccC
Confidence 0 123445 689999999999988 699999999999999999984 4588999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004739 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 205 (732)
Q Consensus 126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~ 205 (732)
| ..+++++.+.|.+.++||++..- ..+....+|...|++..|..+ ..+++|+.
T Consensus 324 p-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~vF~~d--d~vVSgSD 376 (481)
T KOG0300|consen 324 P-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVVFNTD--DRVVSGSD 376 (481)
T ss_pred C-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEEEecC--CceeecCC
Confidence 9 55899999999999999998432 234445678889999999986 48999999
Q ss_pred CCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 206 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 206 dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|.+|+|||+++++ ++.++ ....+++.++.+..+++|+.--.+..|++||++...
T Consensus 377 DrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred CceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999999999764 23222 122368999999999999999999999999998744
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.6e-20 Score=169.22 Aligned_cols=258 Identities=15% Similarity=0.201 Sum_probs=179.4
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
.+|.+-|.++.|.+-|+.+|||+.|++|+|||.... .+.... +.|.+.|..+.|.+.+-|+.+++|+.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 579999999999999999999999999999996533 456666 689999999999876668999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCC--------C---CC--C
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCP--------P---AG--S 157 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~--------~---~~--~ 157 (732)
.-...+.+. .........++..-...|+++.|.|.. +-.+|+++.||.+|||+....-.+. . .. .
T Consensus 89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 864222111 011233455677778899999999942 3678999999999999876543220 0 00 0
Q ss_pred CC---------------------------cccceEEeeccCC--ccccccCCCCCccceEEEEecCCCC---CEEEEEeC
Q 004739 158 SH---------------------------QECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS 205 (732)
Q Consensus 158 ~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~tg~~ 205 (732)
.+ ......++....+ ....+...+++..+|++++|.|+-| ++||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 00 0012233333222 3345567789999999999999754 47999999
Q ss_pred CCeEEEEECCCCC-CCcccccCCCCCCcccccccccccc-CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 206 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 206 dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|| |+||.+.... .+. ......+.-+..+......+ .+|.+ .|+.+.|.-.|..|.+.+.||.|++|...-
T Consensus 248 Dg-v~I~~v~~~~s~i~--~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIE--EEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred Cc-EEEEEEeeccchhh--hhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 99 9999998532 110 00111111111111111221 34544 699999999999999999999999997653
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.1e-21 Score=200.66 Aligned_cols=227 Identities=16% Similarity=0.193 Sum_probs=180.7
Q ss_pred hhhhh--hccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE
Q 004739 3 SSLVR--RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV 79 (732)
Q Consensus 3 ~~~~~--~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l 79 (732)
|++.+ +.+++..|..|+..|+++.|++. ..+|++||.||+|++||++..+-..++ .+....|..++|+|.. +.++
T Consensus 115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~-~~~F 192 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGY-GNKF 192 (839)
T ss_pred EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCC-CceE
Confidence 34444 45667789999999999999984 578999999999999999999888888 6888999999999986 7999
Q ss_pred EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
+++...|.+++||++.+. .+...+.+|.++|.++.|+| ++.+|||||.|++|+|||+.+++...
T Consensus 193 ~s~~dsG~lqlWDlRqp~---------r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~------ 256 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPD---------RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKP------ 256 (839)
T ss_pred EEecCCceEEEeeccCch---------hHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccc------
Confidence 999999999999999754 34678889999999999999 67999999999999999998765320
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC--CCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
+... ....+|.++.|-|...+.|++++. |-.|+|||++-. |.
T Consensus 257 ------~~tI------------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YI 300 (839)
T KOG0269|consen 257 ------KHTI------------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YI 300 (839)
T ss_pred ------eeEE------------eecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------cc
Confidence 0000 112388999999998888998875 778999999842 22
Q ss_pred ccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCCCCcce
Q 004739 238 PMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAM 285 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~ 285 (732)
|.... ..|.. .++.++|.. |...|.+++.||+|..-.+++...+..
T Consensus 301 P~~t~-~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pid 347 (839)
T KOG0269|consen 301 PYATF-LEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPID 347 (839)
T ss_pred cceee-eccCc-cccceeccCCCceeeEeecCccHHHHhhhhcccChhh
Confidence 32221 23555 488899976 456788899999998887777554443
No 139
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=9.2e-20 Score=175.98 Aligned_cols=218 Identities=17% Similarity=0.264 Sum_probs=166.1
Q ss_pred ccccEeeeccCCceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 9 LSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
.......+-|...|++++|+|.. +++|+|..-|.|-+||+.+. ..+..+ ..|..+|.++.|+|.. ...+++.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ss 253 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSS 253 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeee
Confidence 34455677899999999999955 58888999999999999522 234555 7899999999999985 5789999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
+.||+|++-|++..... .+..+......+.++.|+..+ ..++.+..=|...+||+++....
T Consensus 254 SyDGtiR~~D~~~~i~e--------~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~---------- 314 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISE--------EVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSE---------- 314 (498)
T ss_pred ccCceeeeeeecchhhH--------HHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCcc----------
Confidence 99999999999965332 234444445667788888866 44445666669999999987632
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
......|...|.+++++|....+|+|++.|++++|||++....... | .+.
T Consensus 315 --------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------p---------~ls 364 (498)
T KOG4328|consen 315 --------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------P---------FLS 364 (498)
T ss_pred --------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-------c---------cee
Confidence 1122234558999999999899999999999999999997654322 0 011
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
...|.. .|.++.|||.+-.|++.+.|..|+|||..
T Consensus 365 t~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 133444 59999999988889999999999999875
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=166.71 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=135.8
Q ss_pred EEEEeCCCCeeEEEE----ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004739 43 INVWSYSSRKLLHSI----ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 118 (732)
Q Consensus 43 i~vWd~~~~~~~~~~----~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 118 (732)
.+-|+.+..+..+.+ +++|...|++++|+.+ |++|+|++.|++|++|+++....+.. .+++... ..+.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~R~nv-e~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEH-----RCIRQNV-EYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhh-----hHhhccc-cCCC
Confidence 556766655544332 3699999999999999 69999999999999999986433221 1222221 1246
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCC
Q 004739 119 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH 198 (732)
Q Consensus 119 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 198 (732)
.+.+.|.||...+++++-...++++|.+...+.-...+ ..+ ....+.+...|...+..+..... +.
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~------~~v-------~~D~~~f~~kh~v~~i~iGiA~~-~k 200 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH------HFV-------HIDNLEFERKHQVDIINIGIAGN-AK 200 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc------ccc-------cccccccchhcccceEEEeecCC-ce
Confidence 78899999887888888888899999987655311000 001 11123345567777777877766 88
Q ss_pred EEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 199 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 199 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
+|++++.|..|.+|+++ ++.+..+... ...-+..+.||+|++|++++..--|++|++-
T Consensus 201 ~imsas~dt~i~lw~lk-Gq~L~~idtn---------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 201 YIMSASLDTKICLWDLK-GQLLQSIDTN---------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred EEEEecCCCcEEEEecC-Cceeeeeccc---------------------cccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 99999999999999999 6665544221 1124567899999999999998899999653
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.1e-22 Score=200.98 Aligned_cols=202 Identities=24% Similarity=0.402 Sum_probs=174.0
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+...+..|.+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++ .+|...+..+.|+|. +.+.++|+.|+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~--~~~~a~gStdtd 135 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY--GEFFASGSTDTD 135 (825)
T ss_pred CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc--eEEecccccccc
Confidence 33455668999999999999999999999999999999999999999988 899999999999999 589999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
+++||.+.. .|.+.+.+|...|..++|+|+ +.+++++++|..+++||+..++.
T Consensus 136 ~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~---------------- 188 (825)
T KOG0267|consen 136 LKIWDIRKK----------GCSHTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKL---------------- 188 (825)
T ss_pred ceehhhhcc----------CceeeecCCcceeEEEeecCC-CceeeccCCcceeeeeccccccc----------------
Confidence 999999953 347889999999999999995 49999999999999999998873
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
+.....|.+.+.++.|+|. ..++++|+.|++|++||+++.+.+... . ..
T Consensus 189 ---------~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~--------------------~-~~ 237 (825)
T KOG0267|consen 189 ---------SKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSG--------------------K-PE 237 (825)
T ss_pred ---------ccccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeecc--------------------C-Cc
Confidence 3445567788999999998 679999999999999999987655432 1 11
Q ss_pred cccEEEEEEcCCCCEEEEEecCC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGE 270 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg 270 (732)
...|.+++|+|++..+++|....
T Consensus 238 ~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 238 TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cCCceeeeecCCceeeecCchhh
Confidence 22599999999999888886653
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=9e-22 Score=199.73 Aligned_cols=233 Identities=16% Similarity=0.219 Sum_probs=194.2
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
+.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+ .+|..+|.++.|++.+ .+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E--~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSE--RLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcch--hhhcccccCCceeeee
Confidence 455678999999998778899999999999999998888777777 7999999999999995 8999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
+... +.++++.||...+.++.|+|.+ .++++|+.|+.+.+||++...+.
T Consensus 99 leeA----------k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~-------------------- 147 (825)
T KOG0267|consen 99 LEEA----------KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCS-------------------- 147 (825)
T ss_pred hhhh----------hhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCce--------------------
Confidence 9963 3378999999999999999965 88899999999999999865421
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
....+|...+..+.|+|+ |.+++.|+.|.+++|||+..++.+..+ .+|.. .+.
T Consensus 148 -----~~~~s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk~~~ef--------------------~~~e~-~v~ 200 (825)
T KOG0267|consen 148 -----HTYKSHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGKLSKEF--------------------KSHEG-KVQ 200 (825)
T ss_pred -----eeecCCcceeEEEeecCC-CceeeccCCcceeeeeccccccccccc--------------------ccccc-ccc
Confidence 222346667899999999 899999999999999999988776655 44555 589
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
.+.|+|..-.++.|+.|++|++||+++..... ..+.....+.+.+|.|+|..+.
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~----------------s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS----------------SGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEee----------------ccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999733211 2233355677888888888777
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=177.63 Aligned_cols=231 Identities=17% Similarity=0.251 Sum_probs=170.9
Q ss_pred hhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEE---EEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~---~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
..++++.++.+|...=++++|||-. -.|+||..-+.|++|...++.... -| .+|+..|..++|||.. ...|+||
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence 3567889999999999999999922 358899888999999998875432 23 5799999999999987 5899999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
+.||+|+|||++.+.... ....+.|...|+.|.|+... .+||+|+.||+++|||+++-+.-
T Consensus 277 S~DgsIrIWDiRs~~~~~--------~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~---------- 337 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKA--------AVSTKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG---------- 337 (440)
T ss_pred ecCceEEEEEecCCCccc--------eeEeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC----------
Confidence 999999999999764322 34448899999999999866 49999999999999999987621
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
.++.....|..+|+++.|+|.....|++++.|..|.|||+.............. .-++...|.-+.
T Consensus 338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~--~~L~dlPpQLLF 403 (440)
T KOG0302|consen 338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAA--EGLQDLPPQLLF 403 (440)
T ss_pred ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccc--cchhcCCceeEE
Confidence 244555668889999999999888999999999999999975432111100000 002222222222
Q ss_pred c-CCCccccEEEEEEcCCCC-EEEEEecCCeEEEE
Q 004739 243 E-HGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLM 275 (732)
Q Consensus 243 ~-~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iw 275 (732)
- +|.. .+..+.|+++-. +|++.+.||. .||
T Consensus 404 VHqGQk--e~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred Eecchh--HhhhheeccCCCCeEEEecccce-eEE
Confidence 2 2222 388899999654 5666666763 344
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=7.2e-21 Score=178.10 Aligned_cols=248 Identities=16% Similarity=0.210 Sum_probs=194.6
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
++.+++++|.+.|+.|++.. ..+++++.|.+|+.|.+.. ..++++ .....+..+.-+.. +..++||+. .|.
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti--lg~s~~~gIdh~~~--~~~FaTcGe--~i~ 170 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI--LGKSVYLGIDHHRK--NSVFATCGE--QID 170 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee--eccccccccccccc--cccccccCc--eee
Confidence 45788999999999999987 6789999999999999765 366666 34556778877666 478999885 489
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
|||.... .|+..+.--.+.|.++.|+|....+|++|+.|+.|.+||+++..++. .++.++
T Consensus 171 IWD~~R~----------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~----------KVi~~m 230 (433)
T KOG0268|consen 171 IWDEQRD----------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK----------KVILTM 230 (433)
T ss_pred ecccccC----------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc----------eeeeec
Confidence 9999752 45777777788999999999888999999999999999999987542 122222
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
.-+.|+|+|. ...+++|..|..++.||++.... .+..+ .+|..
T Consensus 231 ----------------RTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~~------------p~~v~-------~dhvs- 273 (433)
T KOG0268|consen 231 ----------------RTNTICWNPE-AFNFVAANEDHNLYTYDMRNLSR------------PLNVH-------KDHVS- 273 (433)
T ss_pred ----------------cccceecCcc-ccceeeccccccceehhhhhhcc------------cchhh-------cccce-
Confidence 3357899995 88899999999999999997642 11111 45655
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCc
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 329 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 329 (732)
.|.+++|+|.|+.+++|+.|.+|+||..+.+......+. ..-..|.++.+|.|.+++. +++.
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------------kRMq~V~~Vk~S~Dskyi~---SGSd 335 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------------KRMQHVFCVKYSMDSKYII---SGSD 335 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------------hhhheeeEEEEeccccEEE---ecCC
Confidence 699999999999999999999999999998653322221 1123578899999999999 9999
Q ss_pred chhhHHHHHHHh
Q 004739 330 GKCRMLVEIARN 341 (732)
Q Consensus 330 d~~~~l~~~~~~ 341 (732)
|+.+++|+...|
T Consensus 336 d~nvRlWka~As 347 (433)
T KOG0268|consen 336 DGNVRLWKAKAS 347 (433)
T ss_pred Ccceeeeecchh
Confidence 999999554443
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.3e-20 Score=199.94 Aligned_cols=208 Identities=17% Similarity=0.274 Sum_probs=147.6
Q ss_pred EEEEcCCCC-EEEEE----------eCCCcEEEEeCC--CCe----eEEEEccCCCcCeEEEEEecCCCCC--EEEEEEC
Q 004739 24 AISWNSKGS-LLISG----------SDDTHINVWSYS--SRK----LLHSIETGHSANVFCTKFVPETSDE--LVVSGAG 84 (732)
Q Consensus 24 ~l~~s~dg~-~lasg----------~~dg~i~vWd~~--~~~----~~~~~~~~h~~~V~~~~~s~~~~g~--~l~s~~~ 84 (732)
.++|+|++. +||+| +.+.++-||.+. +.+ .+..+ .-....+.++|.+.+++. +|+.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence 578999886 66655 234566677543 222 33333 344668899999985321 5899999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
||.|.+||...... ......+.....|.+.|..+.|++..+++||+|+.||.|.|||+...+......
T Consensus 89 dG~I~ly~p~~~~~----~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------- 156 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIA----NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-------- 156 (1049)
T ss_pred CCceEEecchhhcc----CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------
Confidence 99999999875200 111245778889999999999999998999999999999999998866331000
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
.......|.+++|+..-.+.|++++.+|.+.|||++..+++-.+.. .
T Consensus 157 ---------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~------------------~ 203 (1049)
T KOG0307|consen 157 ---------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD------------------T 203 (1049)
T ss_pred ---------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc------------------C
Confidence 1123448999999988778999999999999999998876654421 1
Q ss_pred CCccccEEEEEEcCCC-CEEEEEecCC---eEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g-~~l~~~~~dg---~v~iwd~~~ 279 (732)
+. ...+..++|+|+. ..|++++.|. .|.+||++.
T Consensus 204 ~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 204 PG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred CC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 11 1248899999976 4566666643 577777665
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=6.7e-20 Score=164.49 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=139.0
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
..+...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+...+..+.-.|...|+.+.-.|+ ..+.+-+.|+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L 79 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL 79 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence 456778899999999999998876 8889999999999999998887773367889999999997 678999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
.+|++..+ ....-|.-.++++-|.+. -+...+... .+-.++-+....... ..+...+...+.
T Consensus 80 ~lw~ia~s-------------~~i~i~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~-~D~g~~tqv~i~ 142 (323)
T KOG0322|consen 80 ILWTIAYS-------------AFISIHSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHK-QDGGDTTQVQIA 142 (323)
T ss_pred EEEEccCc-------------ceEEEeeeeccccccccc---eeccCCCcchhheecCCcccchhhh-hccCccceeEcc
Confidence 99999852 233346677777877662 232322221 122222221111000 000000000110
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCC--CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRP--HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
+ .......+.+.+..+....+ -+|++|-.+|.+.+||+.++..+-.+. ...+-+... ..
T Consensus 143 d---------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~~~kv~~~~--------as 203 (323)
T KOG0322|consen 143 D---------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--QSSKVESPN--------AS 203 (323)
T ss_pred C---------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--cccccccch--------hh
Confidence 0 01122344666666433322 256677789999999999864332221 110111000 22
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|.. +|.++.+.+.-..=+.|+.+..+..|+++.
T Consensus 204 h~q-pvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 204 HKQ-PVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred ccC-cceeeeechhhcCCcCCCccccceeeeecc
Confidence 333 688888877555556666666677776655
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.3e-20 Score=175.79 Aligned_cols=212 Identities=21% Similarity=0.306 Sum_probs=169.1
Q ss_pred eeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 15 LEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
-.+|++.|.+++|+.+- +.||+||.|.+|++||+.++++...+ ..|...|.+++|+|.. +..|++|+.|++|.+.|.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeec
Confidence 45899999999999754 58999999999999999999999999 6899999999999987 689999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
+..... -..+ ...+.|-.++|.|...+.++++..||+|+-+|+|....+
T Consensus 317 R~~~~s---------~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~--------------------- 365 (463)
T KOG0270|consen 317 RDPSNS---------GKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP--------------------- 365 (463)
T ss_pred cCcccc---------CceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---------------------
Confidence 953221 1222 245789999999999899999999999999999987532
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
+.....|...|.++++++....++++++.|+.|++|++....+...... .+ .-+ ...|
T Consensus 366 ---vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~---------~~---------~~~-rl~c 423 (463)
T KOG0270|consen 366 ---VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH---------SF---------KLG-RLHC 423 (463)
T ss_pred ---eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc---------cc---------ccc-ceee
Confidence 3344457779999999998888999999999999999976543221100 00 001 2556
Q ss_pred EEEcCCCC-EEEEEecCCeEEEEECCCCC
Q 004739 254 VTFSPNGE-EVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 254 l~~sp~g~-~l~~~~~dg~v~iwd~~~~~ 281 (732)
.++.|+-. .|+.|+..+.++|||+.+..
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccCh
Confidence 67777654 56777778899999998854
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=181.23 Aligned_cols=161 Identities=16% Similarity=0.274 Sum_probs=129.3
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
..|...-+.++|.|+ |.+|++|+.||.|++|+....... | ..+.-+...|.+++... +.|++|+.+
T Consensus 10 yaht~G~t~i~~d~~--gefi~tcgsdg~ir~~~~~sd~e~--------P-~ti~~~g~~v~~ia~~s---~~f~~~s~~ 75 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD--GEFICTCGSDGDIRKWKTNSDEEE--------P-ETIDISGELVSSIACYS---NHFLTGSEQ 75 (933)
T ss_pred hhccCceEEEEEcCC--CCEEEEecCCCceEEeecCCcccC--------C-chhhccCceeEEEeecc---cceEEeecc
Confidence 478888999999999 589999999999999987653211 1 22222778888888743 589999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
++|.+|.+..++.-. .......++..++|+.+ |+++|.|+.|-.|++-++....
T Consensus 76 ~tv~~y~fps~~~~~-------------------------iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s 129 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDT-------------------------ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSS 129 (933)
T ss_pred ceEEEeeCCCCCccc-------------------------eeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccc
Confidence 999999998876320 01112347899999998 8899999999999999998876
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
....+ .+|.. +|.++.|+|++++|++.+.||+|+|||++++
T Consensus 130 ~~~~l--------------------rgh~a-pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 130 QEKVL--------------------RGHDA-PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred hheee--------------------cccCC-ceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 65544 66766 7999999999999999999999999999983
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=2.5e-19 Score=179.71 Aligned_cols=277 Identities=18% Similarity=0.249 Sum_probs=185.0
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEE--EccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS--IETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~--~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
++.+..|...|..+.|-|...+|++++.|.++++||+++.+++.. + .+|.+.|.+++|.|.. ...|++|+.||.|.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~-~GH~~SvkS~cf~~~n-~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN-LGHTGSVKSECFMPTN-PAVFCTGGRDGEIL 170 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee-cccccccchhhhccCC-CcceeeccCCCcEE
Confidence 345668999999999999667999999999999999999988766 5 6999999999999986 58999999999999
Q ss_pred EEEcCCCCCCCC------------C-CCC----CCCceeeccccCceeE---EEEecCCCcEEEEEeC-CCcEEEEECCC
Q 004739 90 LFNLSRFSGRGL------------D-DNA----ITPSALYQCHTRRVKK---LAVEVGNPHVVWSASE-DGTLRQHDFRQ 148 (732)
Q Consensus 90 vwd~~~~~~~~~------------~-~~~----~~~~~~~~~h~~~v~~---l~~~p~~~~~l~s~s~-dg~i~vwd~~~ 148 (732)
|||++-...... . ... ...+...+.+...|.+ +.+.. +...||+++. |+.|+|||+++
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecc
Confidence 999985321100 0 000 0112233344444444 44445 3478888887 99999999998
Q ss_pred CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC
Q 004739 149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 228 (732)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~ 228 (732)
.......... ....+.........+.++..+.. |.+|.+.+.|+.|++|++.....--.
T Consensus 250 ~~~~~r~ep~--------------~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP~------ 308 (720)
T KOG0321|consen 250 NYTAYRQEPR--------------GSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSISPV------ 308 (720)
T ss_pred cccccccCCC--------------cccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcCch------
Confidence 7643211111 01111122223446778888887 56777677799999999987542111
Q ss_pred CCCccccccccccccCCCcccc-EEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccC
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL 307 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~-i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (732)
..+ .++.... -..-..+|++.+|++|+.|...++|.+.+.+..... +.+|..
T Consensus 309 -----~~~-------sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~---------------l~Ght~ 361 (720)
T KOG0321|consen 309 -----AEF-------SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL---------------LLGHTR 361 (720)
T ss_pred -----hhc-------cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh---------------hhCcce
Confidence 111 1221111 122356899999999999999999999997654322 234444
Q ss_pred CCCCCccCC-CccccccccccCcchhhHHHHHHHhhhhcCC
Q 004739 308 QPPIHDFLQ-TNIRVRGEVATGLGKCRMLVEIARNSLEEGK 347 (732)
Q Consensus 308 ~~~~~~~~~-~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~ 347 (732)
.|..+.+.| .-..++ +++.|...++ |.+.++-
T Consensus 362 eVt~V~w~pS~~t~v~---TcSdD~~~ki-----W~l~~~l 394 (720)
T KOG0321|consen 362 EVTTVRWLPSATTPVA---TCSDDFRVKI-----WRLSNGL 394 (720)
T ss_pred EEEEEeeccccCCCce---eeccCcceEE-----EeccCch
Confidence 444554444 122344 7799999998 8886544
No 150
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-17 Score=174.97 Aligned_cols=231 Identities=19% Similarity=0.248 Sum_probs=173.7
Q ss_pred hhccccEeeeccCCceeEEEEcCCC---CEEEEEeCCCcEEEEeCCCCeeEEEEc-------------------------
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE------------------------- 58 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg---~~lasg~~dg~i~vWd~~~~~~~~~~~------------------------- 58 (732)
.+..+++.|.+|..+++.+.+.|.. .++.+++.||+|++||...+..+.++.
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 3567788999999999999998854 467799999999999987655444431
Q ss_pred -----------------------------------------------------------------------------cCC
Q 004739 59 -----------------------------------------------------------------------------TGH 61 (732)
Q Consensus 59 -----------------------------------------------------------------------------~~h 61 (732)
..|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 236
Q ss_pred CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004739 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 141 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 141 (732)
...++|.+++|+ +++++++..||.|.+|.=-..+.. ......+.=|.+.|++++|++++ .+|++|+..|.+
T Consensus 205 tf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VL 275 (792)
T KOG1963|consen 205 TFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVL 275 (792)
T ss_pred cccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEecCC-ceEeecccceEE
Confidence 667899999999 499999999999999964321111 12245666789999999999965 888999999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 004739 142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 221 (732)
Q Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~ 221 (732)
.+|.+.+++. ..+|.-..+|..+.++|| +.+.+....|+.|.+..+.+.....
T Consensus 276 v~Wq~~T~~k--------------------------qfLPRLgs~I~~i~vS~d-s~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 276 VLWQLETGKK--------------------------QFLPRLGSPILHIVVSPD-SDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred EEEeecCCCc--------------------------ccccccCCeeEEEEEcCC-CCeEEEEecCceEEEEeccchhhhh
Confidence 9999998872 233445568999999999 7788888899999999887766554
Q ss_pred ccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004739 222 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
++....++.. .+ ..+..+ -.+.++++|..+.++..+..|.|.+||+.+....
T Consensus 329 tIsgi~~~~~---~~------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 329 TISGIKPPTP---ST------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred hccCccCCCc---cc------cccccc-cceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 4433222100 00 011222 3678999997778899999999999999986544
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=7.3e-18 Score=172.05 Aligned_cols=214 Identities=13% Similarity=0.148 Sum_probs=142.4
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~d 85 (732)
+.+.++.+.+|. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+ ..+.. +..+.|+|++ +.++ +++.+
T Consensus 20 t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~-~~~~~~~~~g--~~l~~~~~~~ 94 (300)
T TIGR03866 20 TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGPD-PELFALHPNG--KILYIANEDD 94 (300)
T ss_pred CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCCC-ccEEEECCCC--CEEEEEcCCC
Confidence 456667777654 46789999999876 56778899999999999888777 34433 5678999984 6554 55668
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccce
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
+.|++||+.+.. .+..+. +...+.+++|+|++ .++++++.++ .+.+||..+.+..
T Consensus 95 ~~l~~~d~~~~~----------~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~------------ 150 (300)
T TIGR03866 95 NLVTVIDIETRK----------VLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIV------------ 150 (300)
T ss_pred CeEEEEECCCCe----------EEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEE------------
Confidence 999999998632 133333 23346889999955 7777777665 4677898765421
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.... ......+++|+|+ +.+|+ ++..++.|++||+++.+.+..+..... ..
T Consensus 151 --~~~~------------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-----------~~-- 202 (300)
T TIGR03866 151 --DNVL------------VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-----------GV-- 202 (300)
T ss_pred --EEEE------------cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-----------cc--
Confidence 0000 0113457899999 56664 555699999999998765443321100 00
Q ss_pred CCCccccEEEEEEcCCCCEEEEE-ecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~ 279 (732)
. ........++|+|++++++++ +.++.|.+||+++
T Consensus 203 ~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 203 H-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred c-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 0 001124568899999986655 4467899998876
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.2e-18 Score=160.50 Aligned_cols=239 Identities=11% Similarity=0.079 Sum_probs=173.3
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.|..++.+++|.+ ...+++|+-||.|+++|+.++..... ..|..+|.|+.+++.. ..+++|+.|++|++||.+..
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee--ccCCCceEEEEeeccC--CeEEEcccCccEEEEecccc
Confidence 4899999999987 45799999999999999998876543 4799999999999874 78999999999999999952
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
.. ...+. ....|.++... ++.|+.|+.|..+.+||+++......
T Consensus 127 ~~----------~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q---------------------- 170 (323)
T KOG1036|consen 127 VV----------VGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQ---------------------- 170 (323)
T ss_pred cc----------ccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcccccchhh----------------------
Confidence 21 22332 23478888774 47888999999999999998764311
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
.....-...+.++++.|+ +.-+++++-||.|.+=.++..+..+.... .-.|-+.... ...-..+|++++|
T Consensus 171 -~reS~lkyqtR~v~~~pn-~eGy~~sSieGRVavE~~d~s~~~~skky---aFkCHr~~~~-----~~~~~yPVNai~F 240 (323)
T KOG1036|consen 171 -RRESSLKYQTRCVALVPN-GEGYVVSSIEGRVAVEYFDDSEEAQSKKY---AFKCHRLSEK-----DTEIIYPVNAIAF 240 (323)
T ss_pred -hccccceeEEEEEEEecC-CCceEEEeecceEEEEccCCchHHhhhce---eEEeeecccC-----CceEEEEeceeEe
Confidence 111223457899999996 66788999999999877766522111100 0012111100 0011236999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
+|-...|++|+.||.|.+||+.+.++...+ .+.+..+.+++|+.||..+|
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~----------------~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQL----------------AKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhc----------------cCCCCceEEEEeccCCCeEE
Confidence 999999999999999999999985543322 22334566778888888888
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.2e-18 Score=166.06 Aligned_cols=171 Identities=19% Similarity=0.294 Sum_probs=135.4
Q ss_pred cCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe---------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 18 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 18 h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~---------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
...+|..+.|.++.. +||||+.|..|+||-+..+. .+..+ ..|..+|+++.|+|+ |++|+||+.+|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~ 88 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGE 88 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCce
Confidence 357999999999776 99999999999999876432 22334 689999999999999 699999999999
Q ss_pred EEEEEcCCCC------CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 88 VRLFNLSRFS------GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 88 i~vwd~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
|.+|-...-. ........+...+.+.+|...|..++|+|++ +++++++.|..+++||+..++.
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l---------- 157 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQL---------- 157 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEecccee----------
Confidence 9999776200 0011122234456788999999999999955 8999999999999999999873
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
.....+|...+..++|.|. ..++++-+.|...+.+++...+
T Consensus 158 ---------------~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 158 ---------------LAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ---------------Eeeccccccccceeecchh-hhhhhhhccCcccceeeeeeee
Confidence 3334567778999999998 6789999999888888776543
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.4e-19 Score=177.83 Aligned_cols=219 Identities=15% Similarity=0.229 Sum_probs=170.0
Q ss_pred ccEeeeccC-CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 11 QERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 11 ~~~~l~~h~-~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
+...+.|+. ..|-+++|++ +..|++.+.+|.|.-||+.+++.+..+ ....++|.+++.+|.+ ..++.|+.||.+.
T Consensus 60 ~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~--~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPEN--TILAIGCDDGVLY 135 (691)
T ss_pred eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCcc--ceEEeecCCceEE
Confidence 455666764 6899999995 556888889999999999999999999 7889999999999994 8999999999777
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
.++..... ...-..+...++.|.++.|+|++ ..+++|+.||.|++||..++.... +...
T Consensus 136 ~~s~~p~~--------I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~------------~~~~ 194 (691)
T KOG2048|consen 136 DFSIGPDK--------ITYKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLH------------IITM 194 (691)
T ss_pred EEecCCce--------EEEEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEE------------Eeee
Confidence 77666422 12233444557899999999955 789999999999999999887431 1111
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
+.. ........-|+++.|-.+ ..|++|.+-|+|.+||...+..++.+ ..|..
T Consensus 195 ~~d-----~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS~--------------------~~h~a- 246 (691)
T KOG2048|consen 195 QLD-----RLSKREPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQSH--------------------SCHDA- 246 (691)
T ss_pred ccc-----ccccCCceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhhh--------------------hhhhc-
Confidence 111 111224446788888876 38999999999999999988766554 33444
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 282 (732)
.|.+++..+++.++++++.|+.|..|...+.+.
T Consensus 247 dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 247 DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred ceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 499999999999999999999999998887544
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=2e-18 Score=172.58 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=129.5
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|...|+.+.|+|-. +.+|++|+.|..|+||.+..+-++.+ ..+-..+.+....|.++.|+|....++++++ .
T Consensus 76 ~~H~d~VtDl~FspF~-D~LLAT~S~D~~VKiW~lp~g~~q~L----Sape~~~g~~~~~vE~l~fHpTaDgil~s~a-~ 149 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFA-DELLATCSRDEPVKIWKLPRGHSQKL----SAPEIDVGGGNVIVECLRFHPTADGILASGA-H 149 (1012)
T ss_pred ecccceeeccCccccc-hhhhhcccCCCeeEEEecCCCccccc----CCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence 6899999999999976 57999999999999999985433322 1122233334557899999998767777665 5
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML- 217 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~- 217 (732)
|.+++||+.+.+ .+....+|...|.++.|+.| |.+|++.+.|..|+|||.+..
T Consensus 150 g~v~i~D~stqk-------------------------~~~el~~h~d~vQSa~WseD-G~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 150 GSVYITDISTQK-------------------------TAVELSGHTDKVQSADWSED-GKLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred ceEEEEEcccCc-------------------------eeecccCCchhhhccccccC-CceEeeecCCcceEEeCCccCC
Confidence 899999999987 34455678889999999999 899999999999999999864
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC----CeEEEEECCCCCCc
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHAGGR 283 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~ 283 (732)
++++.. .+|.+..=..+.|.-+-..|++.+.+ ..|++||.+....+
T Consensus 204 ~piQ~t--------------------e~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p 253 (1012)
T KOG1445|consen 204 EPIQTT--------------------EGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAP 253 (1012)
T ss_pred Cccccc--------------------cccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCc
Confidence 233222 55655444567887665566666554 57999999886543
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.2e-18 Score=161.44 Aligned_cols=170 Identities=15% Similarity=0.256 Sum_probs=133.4
Q ss_pred eeeccCCceeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC---eeEEEEcc-CCCcCeEEEEEecCCC--CCEEEEE
Q 004739 14 ELEGHQGCVNAISWNS-----KGSLLISGSDDTHINVWSYSSR---KLLHSIET-GHSANVFCTKFVPETS--DELVVSG 82 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~-----dg~~lasg~~dg~i~vWd~~~~---~~~~~~~~-~h~~~V~~~~~s~~~~--g~~l~s~ 82 (732)
..++|+.+|..++|++ ..+.+|+.+. ..+.+|..... ..++.+.. .|....+.++|+-+.+ ..+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457899999999995 3346677665 57889886543 33333322 3777888899986542 3688999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
+.-|.|+|.|+.+. .+...+.+|...|+.|.++|+.+++++++|.|..|++|++++...+
T Consensus 112 G~~GvIrVid~~~~----------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv---------- 171 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSG----------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV---------- 171 (385)
T ss_pred cceeEEEEEecchh----------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE----------
Confidence 99999999999863 3367899999999999999999999999999999999999987632
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
. .+....+|...|.++.|+++ +.+|++++.|..|++|++...
T Consensus 172 --~----------VfGG~egHrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 172 --A----------VFGGVEGHRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred --E----------EecccccccCcEEEEEEcCC-CCeeeccCCcceEEEEecChh
Confidence 1 12234568889999999998 779999999999999999854
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=6.2e-18 Score=154.19 Aligned_cols=180 Identities=20% Similarity=0.294 Sum_probs=148.0
Q ss_pred eccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC-CCEEEEEECCCcEEEEEc
Q 004739 16 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 16 ~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~-g~~l~s~~~dg~i~vwd~ 93 (732)
.+|+-.|..+.|-| |.-.+.+++-|.+++|||..+.+....| ..++.|+.-+++|-.. --++++|..|-.|++-|+
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 47889999999999 5567888899999999999999998888 5778899999998532 136777788889999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
..+ .+.+.+.+|.+.|.++.|+|...-.|++|+.||.|++||++.-.-+ ...++..++.
T Consensus 176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc-----------f~~lD~hn~k 234 (397)
T KOG4283|consen 176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC-----------FRVLDQHNTK 234 (397)
T ss_pred cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce-----------eEEeecccCc
Confidence 974 3378999999999999999988788999999999999999876433 2334444432
Q ss_pred c-ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 174 K-RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 174 ~-~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
. ..+...+.|.+.+.+++|..+ +.++++++.|..+++|+..+++.
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCcc
Confidence 2 233346778999999999999 88999999999999999988763
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=2.6e-19 Score=165.72 Aligned_cols=282 Identities=13% Similarity=0.121 Sum_probs=186.8
Q ss_pred cCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 18 HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 18 h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
|......++|+-| ..+||.|+.-|.|+|.|+.++++...+ .+|...|+.+.|.|.. .+++++++.|..|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEec
Confidence 7788888999853 348999999999999999999999999 7999999999999985 579999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC---CCCcccceEEeecc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG---SSHQECRNILLDLR 170 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~ 170 (732)
++..... ...-..+|.+.|.++.|++++ .+|++++.|.+|++|++...+....+. .-.++....-+-..
T Consensus 166 ~~~~Cv~-------VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 166 QTDVCVA-------VFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred cCCeEEE-------EecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 9742211 123456899999999999966 799999999999999998654321000 00000000000000
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
.-....+.....|...|-|+.|- |+++++-+-++.|..|-.. -.+.+.... ++..+...+....+. ....
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vk---p~es~~Ti~~~~~~~---~c~i 308 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVK---PPESATTILGEFDYP---MCDI 308 (385)
T ss_pred ccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccC---CCccceeeeeEeccC---ccce
Confidence 00111122334577788888887 5699999999999999883 222222211 111111111111110 1111
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcce-eeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 328 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 328 (732)
+....+|.|-++.|+.|.+.|.|++||++....+.. ...+ ..-...+...+|+.||..+. ...
T Consensus 309 Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~-------------s~~~~tVRQ~sfS~dgs~lv---~vc 372 (385)
T KOG1034|consen 309 WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH-------------SKSGSTVRQTSFSRDGSILV---LVC 372 (385)
T ss_pred EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe-------------ccccceeeeeeecccCcEEE---EEe
Confidence 334456678889999999999999999998543211 1111 11223567788999998887 666
Q ss_pred cchhhH
Q 004739 329 LGKCRM 334 (732)
Q Consensus 329 ~d~~~~ 334 (732)
.|+++-
T Consensus 373 dd~~Vw 378 (385)
T KOG1034|consen 373 DDGTVW 378 (385)
T ss_pred CCCcEE
Confidence 666543
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.7e-18 Score=170.42 Aligned_cols=249 Identities=19% Similarity=0.296 Sum_probs=183.0
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--------CCeeEEEEccCCCcCeEEEEEecCCCCC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------SRKLLHSIETGHSANVFCTKFVPETSDE 77 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--------~~~~~~~~~~~h~~~V~~~~~s~~~~g~ 77 (732)
.++.....++.-|.+.|+.++|.|-...|++++.||++++|+++ .-+.+.+| .+|.++|.|++..++ ++
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n--~~ 357 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN--GE 357 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC--ce
Confidence 33445556889999999999999999999999999999999993 23577888 799999999999998 59
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCCCCCC-CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004739 78 LVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 156 (732)
Q Consensus 78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 156 (732)
.+++|+.||+|+.|++. .+....+... ......+.||.+.|+.+++++.. ..|++|+.||+++.|+......+....
T Consensus 358 ~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred EEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccccCC
Confidence 99999999999999887 3333221111 12356788999999999999954 778899999999999987776531111
Q ss_pred CCCccc---------------------ceEEeeccCCccccccC-----CCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 157 SSHQEC---------------------RNILLDLRCGAKRSLAD-----PPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 157 ~~~~~~---------------------~~~~~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
...... ...+.+........+.. .+.....+.-+.+.|. ..+.+++..|+.|+
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIR 514 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCcee
Confidence 000000 00011111111101110 1112235667788888 57999999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
++|..+++++... ..|.. .++++++.|+|.+|++++.|+.|++|.+....
T Consensus 515 ~~dn~~~~~l~s~--------------------~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 515 FFDNKTGKILHSM--------------------VAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cccccccccchhe--------------------eeccc-eecceeecCCCceEEeecCCceeehhhccchh
Confidence 9999999877654 33444 59999999999999999999999999987643
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-18 Score=169.41 Aligned_cols=219 Identities=18% Similarity=0.271 Sum_probs=172.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
|++......++++|+..++|+|||++ .+.+++++.+|+..|+++.+.-. +.+|++++..|.|.|..+.++..
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~----- 155 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQK----- 155 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCcc-----
Confidence 44444445899999999999999999 45555555899999999999887 58999999999999999987532
Q ss_pred CCCCCceeecc-ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004739 104 NAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 182 (732)
Q Consensus 104 ~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (732)
...+.. ....|.-+.|+|....+|.+++.+|.|.+||+....+. +.....
T Consensus 156 -----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~------------------------~~~~~~ 206 (673)
T KOG4378|consen 156 -----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI------------------------FHASEA 206 (673)
T ss_pred -----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc------------------------cchhhh
Confidence 122322 23567799999988788899999999999999776532 334455
Q ss_pred CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004739 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 262 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 262 (732)
|..+...|+|+|.+..+|++.+.|..|.+||.+..+....+ .+ ..+.+.++|+++|.+
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----------~y------------~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----------TY------------SHPLSTVAFSECGTY 264 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeeccccccccee----------ee------------cCCcceeeecCCceE
Confidence 77788999999998999999999999999999976543322 11 116889999999999
Q ss_pred EEEEecCCeEEEEECCCCCCcc-eeeecCCCCceeeeccC
Q 004739 263 VLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPT 301 (732)
Q Consensus 263 l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (732)
|++|+..|.|..||++..+.+. ++..+...+..++|.|.
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 9999999999999999866554 44456666777777654
No 161
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=9.9e-19 Score=170.30 Aligned_cols=222 Identities=13% Similarity=0.224 Sum_probs=174.4
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
..-|+++...|||+.|++|+.-.++.|||+..... ...+ ....-..++++.+|+. +..++|..||.|.|||+.+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael-tssapaCyALa~spDa--kvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDA--KVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCcc--ceeeeeccCCcEEEEEcccc
Confidence 45688899999999999999999999999986543 2333 3444567889999995 89999999999999999963
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC--------CCCCCCcccceEEee
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP--------PAGSSHQECRNILLD 168 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~~ 168 (732)
..++.|++|.+.+.||..++++ ..|.||+-|.+||.||++++..+. +...-.+......+.
T Consensus 542 ----------~~VrqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 542 ----------TLVRQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred ----------eeeecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence 3488999999999999999955 889999999999999999987652 122222333445555
Q ss_pred ccCCccccccC-------CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 169 LRCGAKRSLAD-------PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 169 ~~~~~~~~~~~-------~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
.+++....+.. ..-|..-|.++.|.+. |+++++.+.|+.+..|...-+..+...
T Consensus 611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFqs------------------ 671 (705)
T KOG0639|consen 611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQS------------------ 671 (705)
T ss_pred cccCcEEEEecCCccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceeec------------------
Confidence 55554433332 2346678899999999 899999999999999998877544322
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~ 277 (732)
.....|.++.++.|.+++++|+.|....+|.+
T Consensus 672 ----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 ----KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ----cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 22336999999999999999999998888865
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=154.76 Aligned_cols=199 Identities=13% Similarity=0.213 Sum_probs=151.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 004739 32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 111 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 111 (732)
..+|++-..|.|++||..+++.+..+ +++...++.+.|.....+..+.+|+.||+|++||++..... ....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~--------a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES--------ARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--------hhee
Confidence 56889999999999999999999999 89999999999988533689999999999999999975432 2445
Q ss_pred ecccc-CceeEEEEecCCCcEEEEEe----CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004739 112 YQCHT-RRVKKLAVEVGNPHVVWSAS----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 186 (732)
Q Consensus 112 ~~~h~-~~v~~l~~~p~~~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (732)
+..+. .+..+++..- ..+++++|. .+-.|.+||++..+... -.-...|...
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD 167 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD 167 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence 55555 4566666654 336777664 35579999999887420 1112346779
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC-CEEEE
Q 004739 187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL 265 (732)
Q Consensus 187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~~ 265 (732)
|+++.|+|.++++|++|+.||.|.|||+.....-..+. .. -.+.. .|..+.|..++ +.|.+
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~---------~v--------iN~~s-SI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL---------HV--------INHGS-SIHLIGWLSKKYKRIMC 229 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH---------Hh--------hcccc-eeeeeeeecCCcceEEE
Confidence 99999999999999999999999999998653211110 00 12222 59999999887 45888
Q ss_pred EecCCeEEEEECCCCC
Q 004739 266 SYSGEHVYLMDVNHAG 281 (732)
Q Consensus 266 ~~~dg~v~iwd~~~~~ 281 (732)
-+......+|+++.+.
T Consensus 230 lTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGS 245 (376)
T ss_pred EEccCceeEEEccCCC
Confidence 9999999999999853
No 163
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=4.6e-19 Score=182.67 Aligned_cols=126 Identities=27% Similarity=0.494 Sum_probs=116.9
Q ss_pred hhhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 4 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
.++++++.++.|.||...|+|+.|...|.++++|+.|..|+||..+++.++... .||.+.|+.++.+.+ ..++++++
T Consensus 175 tmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~iaaaS 251 (1113)
T KOG0644|consen 175 TMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTMIAAAS 251 (1113)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhhhhhcc
Confidence 588999999999999999999999999999999999999999999999999999 899999999999887 37899999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 147 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 147 (732)
.|..|++|.+..+ .++..+.+|++.|++|+|+|- .+.+.||++++||.+
T Consensus 252 ~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 252 NDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR 300 (1113)
T ss_pred cCceEEEEecCCC----------chHHHHhccccceeeeccCcc-----ccCCCCCceEecccc
Confidence 9999999999863 458899999999999999992 378899999999987
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=7.3e-18 Score=159.86 Aligned_cols=231 Identities=17% Similarity=0.276 Sum_probs=165.9
Q ss_pred EeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-------eEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 13 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
-.+.||+++|..++|+| +...||+||.|.+|.||.+-.+. .+..+ .+|...|.-++|+|.. .+.|+|++.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag~ 152 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAGS 152 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhccC
Confidence 35679999999999999 66789999999999999986442 34455 7999999999999987 589999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
|.+|.+||+.++.. +..+. |.+.|.++.|+.+ +.+|++.+.|..|||||.++++..... ..|.
T Consensus 153 Dn~v~iWnv~tgea----------li~l~-hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e~-~~he---- 215 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEA----------LITLD-HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHE---- 215 (472)
T ss_pred CceEEEEeccCCce----------eeecC-CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeeec-cccc----
Confidence 99999999998542 34455 9999999999995 489999999999999999998743211 1111
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe---CCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
++ .-..+-|-.+ +.++-||. ++..+-+||..+.+.--.+ ..+
T Consensus 216 -----------------G~--k~~Raifl~~-g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~el----- 260 (472)
T KOG0303|consen 216 -----------------GA--KPARAIFLAS-GKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QEL----- 260 (472)
T ss_pred -----------------CC--CcceeEEecc-CceeeeccccccccceeccCcccccCccee----------EEe-----
Confidence 11 1233445555 55555553 3688999998875421111 000
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCc---ceeeecCCCCceeeeccC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPT 301 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~ 301 (732)
.... .|.---|.|+.++++.++. |+.||.|.+.+...- ...+...++.+.+.|.|.
T Consensus 261 --DtSn--Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 261 --DTSN--GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred --ccCC--ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 1111 2665678899998877766 999999999884421 122344566666666664
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=5.8e-18 Score=163.21 Aligned_cols=194 Identities=18% Similarity=0.269 Sum_probs=154.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCee--------------E------EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKL--------------L------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~--------------~------~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.|+++|.|..|..|.|||+.-... . ...-.+|+.+|..++|...- -+.|+|||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~-~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF-RNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc-ceeEEecCCCceEE
Confidence 367999999999999999752110 0 00013799999999998875 47999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+||+.++ +|..++..|...|.++.|+|..+.+|++|+.|++|.+.|.+..... ..-|.
T Consensus 270 lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-----------~~~wk- 327 (463)
T KOG0270|consen 270 LWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-----------GKEWK- 327 (463)
T ss_pred EEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc-----------CceEE-
Confidence 9999975 3467788899999999999999999999999999999999964321 01111
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCcc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
..+.|-.++|.|.....+++++.||+|+-+|+|+. +++.++ ..|.+
T Consensus 328 -------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~--------------------~AHd~ 374 (463)
T KOG0270|consen 328 -------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL--------------------KAHDD 374 (463)
T ss_pred -------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE--------------------EeccC
Confidence 23378889999988889999999999999999976 333332 55666
Q ss_pred ccEEEEEEcCCC-CEEEEEecCCeEEEEECCCC
Q 004739 249 LHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 249 ~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~ 280 (732)
+|.+|++++.- .+|++++.|+.|++|++...
T Consensus 375 -~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 375 -EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred -CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 69999999854 57888999999999999863
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=2.7e-17 Score=149.76 Aligned_cols=236 Identities=16% Similarity=0.254 Sum_probs=171.9
Q ss_pred hccccEeee-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee-EEEEc----cCCCcCeEEEEEecCCCCCEEEE
Q 004739 8 RLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSIE----TGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 8 ~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~-~~~~~----~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
+++++..|. .+-+.|.|+.|.|++..||+-. |..|.+|++..+.. +..+. ..|....++-+|+|..+|+.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 355666665 5667999999999999999875 78999999987765 33332 24667789999999766788877
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
. .|+++..||+++.+.. ...-..|...|..+.|+|+...+|++|+.||.|++||.+..+.
T Consensus 190 t-~d~tl~~~D~RT~~~~---------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------- 249 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKN---------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------- 249 (370)
T ss_pred e-CCCcEEEEEccchhhh---------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----------
Confidence 5 4899999999975321 3344578889999999998888999999999999999998764
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC----C----CCcc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----P----PPCV 233 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~----~----~~~~ 233 (732)
++...++|...|.++.|+|....++++|+.|..|.+|..........+..... . ..-.
T Consensus 250 --------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 250 --------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred --------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 46667788889999999998888999999999999998765432222211100 0 0000
Q ss_pred cccccccccc-CCCccccEEEEEEcCCCCE-EEEEecCCeEEEEECCC
Q 004739 234 NYFCPMHLSE-HGRSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~-l~~~~~dg~v~iwd~~~ 279 (732)
+.+....+.. ..|.+ .|++++|+.-..+ +++-+.||.+.|=.+..
T Consensus 316 kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0011111100 33555 5999999986665 55668899998876654
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.2e-17 Score=156.29 Aligned_cols=163 Identities=16% Similarity=0.261 Sum_probs=130.2
Q ss_pred CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004739 61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 140 (732)
Q Consensus 61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 140 (732)
..+.|+++.|+|.. .+|++++.|++++||-+..... ..++.+.--..+|.+..|.|++...+++++....
T Consensus 212 s~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N--------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVN--------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CcCCceEEEecCCC--ceEEEecCCCcEEEEEecCccC--------hhheeeeeccCccceeeecCCCceEEEecccceE
Confidence 34789999999995 8999999999999999985332 2356666667899999999977558889999999
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
++.||+.+.+... +..+.++ ...+.....+++ +++|+..+..|.|.+-...+++.
T Consensus 282 ~ysyDle~ak~~k-----------------------~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 282 LYSYDLETAKVTK-----------------------LKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred EEEeecccccccc-----------------------ccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhh
Confidence 9999998877431 1111111 124567778898 78999999999999999998887
Q ss_pred CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+.++.. .+.|..++|+.+|+.|++.+.+|.|++||++.
T Consensus 338 i~s~Ki----------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 338 ITSFKI----------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hheeee----------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 765521 22599999999999999999999999999988
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=2.5e-15 Score=161.62 Aligned_cols=207 Identities=28% Similarity=0.443 Sum_probs=157.2
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEccC-CCcCeEEEEE-ecCCCCC-EEEEEEC-CCcE
Q 004739 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV 88 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-~~~~~~~~-h~~~V~~~~~-s~~~~g~-~l~s~~~-dg~i 88 (732)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .. +...+..+.+ +++. . +++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPDG--NSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCCc--ceEEeccCCCCccE
Confidence 567899999999999999999999999999999998886 66666 34 3347777777 6663 4 5555455 9999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
.+|++... ......+..|...|..+.|+|++ ..+++++. |+.+++|++.....
T Consensus 137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------- 190 (466)
T COG2319 137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKP---------------- 190 (466)
T ss_pred EEEEecCC---------CeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCce----------------
Confidence 99999851 02367788899999999999965 57777775 99999999987431
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCC-EEEEEeCCCeEEEEECCCCCCCc-ccccCCCCCCccccccccccccCC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLPPLT-SCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
+.....|...+.+++|+|+ +. .+++++.|+.|++||...+..+. .+ .+
T Consensus 191 ---------~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~~i~~wd~~~~~~~~~~~--------------------~~ 240 (466)
T COG2319 191 ---------LSTLAGHTDPVSSLAFSPD-GGLLIASGSSDGTIRLWDLSTGKLLRSTL--------------------SG 240 (466)
T ss_pred ---------EEeeccCCCceEEEEEcCC-cceEEEEecCCCcEEEEECCCCcEEeeec--------------------CC
Confidence 1222236778999999988 54 55555899999999887544332 11 34
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|... . -..|+|++.++++++.|+.+++|++....
T Consensus 241 ~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 241 HSDS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred CCcc-e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 4442 2 22899999889999999999999999754
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=2.9e-17 Score=149.71 Aligned_cols=231 Identities=15% Similarity=0.266 Sum_probs=168.8
Q ss_pred ccCCceeEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCeeE----EEE----ccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 17 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSSRKLL----HSI----ETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg-----~~lasg~~dg~i~vWd~~~~~~~----~~~----~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
.|.-+++.+.|.|+. .+|||++. .+|+|.+...+.. ..+ ...+..++++..|..-. .++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence 588899999999976 47777653 6999998742211 111 12466889999998764 58999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
-|-+..|||++++... .....+..|...|..|+|...+.+.||+.|.||.+|+||++..+.-
T Consensus 171 iDTTCTiWdie~~~~~-------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------- 232 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG-------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------- 232 (364)
T ss_pred ccCeEEEEEEeecccc-------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence 9999999999975211 1245677899999999999977789999999999999999987632
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCC-CCcccccCCCCCCcccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
..+.+.+....++..++|++++.+++|+-..| ..|.|.|++... ++..+
T Consensus 233 -----------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L------------------ 283 (364)
T KOG0290|consen 233 -----------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL------------------ 283 (364)
T ss_pred -----------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh------------------
Confidence 11222222244788899999989999988776 469999998632 11111
Q ss_pred ccCCCccccEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCC-----cceeeecCCCCceeeecc
Q 004739 242 SEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~ 300 (732)
.+|.. .|+.++|.|.. ..|++++.|.++.|||+..... +...+..+..++.+.|++
T Consensus 284 --~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 284 --RNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSS 345 (364)
T ss_pred --hcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecc
Confidence 66777 59999999964 6899999999999999987543 222333444444555544
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.3e-18 Score=181.03 Aligned_cols=229 Identities=22% Similarity=0.319 Sum_probs=171.5
Q ss_pred CCceeEEEEcCCCCE----EEEEeCCCcEEEEeCCCC------eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 19 QGCVNAISWNSKGSL----LISGSDDTHINVWSYSSR------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~----lasg~~dg~i~vWd~~~~------~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
...-+.++|.+.|.. ||.|..||.|.+||...- ..+.+. ..|.+.|..+.|++.. ++.|++|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q-~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQ-GNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccC-CceeeccCCCCcE
Confidence 456788999997765 888899999999997642 244555 6899999999999997 6899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
.|||+...+... .+- -..-.+.|.+++|+....++|++++.+|.+.|||++..+.+...
T Consensus 142 ~iWDlnn~~tP~------~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l------------- 200 (1049)
T KOG0307|consen 142 LIWDLNKPETPF------TPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL------------- 200 (1049)
T ss_pred EEeccCCcCCCC------CCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-------------
Confidence 999999743211 110 12245789999999877899999999999999999998643211
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCC-CCcccccCCCCCCccccccccccccC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
.... ....+..++|+|++...|++++.| -.|.+||+|... +++ .+ .
T Consensus 201 ---------s~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-------------~~-------~ 250 (1049)
T KOG0307|consen 201 ---------SDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-------------IL-------E 250 (1049)
T ss_pred ---------ccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh-------------hh-------c
Confidence 1111 113678999999988888888876 469999998643 221 11 5
Q ss_pred CCccccEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccC
Q 004739 245 GRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 301 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (732)
+|.. .|.++.|++.+ .+|++++.|+.|.+|+.++++....+-..++....+.|.|.
T Consensus 251 ~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 251 GHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred cccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 5666 49999999966 78899999999999999997655544444444555555554
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=159.97 Aligned_cols=176 Identities=18% Similarity=0.305 Sum_probs=135.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
.|+.++|-|||..|+.+.. ..+.|||+..|..+..+ ++|++.|+|++|+.+ |++++||+.|..|.+|+.+...
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG--- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEG--- 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEecccccc---
Confidence 8999999999998777654 57999999999999999 899999999999999 6999999999999999876311
Q ss_pred CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004739 101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180 (732)
Q Consensus 101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (732)
+.. ..|.+.|.|+.|+|- .+.+++|+-. ..-+|........ .
T Consensus 87 --------~Lk-YSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~V~---------------------------K 128 (1081)
T KOG1538|consen 87 --------ILK-YSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKSVS---------------------------K 128 (1081)
T ss_pred --------eee-eccCCeeeEeecCch-HHHhhhcchh-hccccChhhhhHH---------------------------h
Confidence 222 359999999999994 4888898864 4678987654311 0
Q ss_pred CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g 260 (732)
......+.+++|..| |.+|+.|-.||+|.|-+... ++...++ ..|..+.+|++++|+|..
T Consensus 129 ~kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~g-Eek~~I~------------------Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTND-GQYLALGMFNGTISIRNKNG-EEKVKIE------------------RPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hhhheeEEEeeecCC-CcEEEEeccCceEEeecCCC-CcceEEe------------------CCCCCCCCceEEEecCCC
Confidence 112337889999998 89999999999999885432 2211111 133445589999999965
Q ss_pred C
Q 004739 261 E 261 (732)
Q Consensus 261 ~ 261 (732)
.
T Consensus 189 g 189 (1081)
T KOG1538|consen 189 G 189 (1081)
T ss_pred C
Confidence 3
No 172
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=7.2e-17 Score=156.20 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=167.6
Q ss_pred hhccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
+...-+..+..|..+|.+|.|+|. ...+.+.|+||+|++-|+++... +..+ ......+..+.|+.+. ..++.+.
T Consensus 222 ~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~--~~vl~~~ 298 (498)
T KOG4328|consen 222 KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAES--RSVLFGD 298 (498)
T ss_pred CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCC--ccEEEee
Confidence 344456677889999999999994 46888999999999999987643 3333 2234556778888874 5666777
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.=|.+.+||+++.... ...+.-|...|++++++|..+.+|+|+|.|++.+|||++.......
T Consensus 299 ~~G~f~~iD~R~~~s~---------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--------- 360 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSE---------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--------- 360 (498)
T ss_pred cccceEEEEeecCCcc---------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------
Confidence 6679999999986432 3556668889999999999999999999999999999988653210
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC----CCCCCcccccCCCCCCcccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
++.....|.-.|.+..|+|.++. |+|.+.|..|||||.. ...++..+..
T Consensus 361 ------------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~H-------------- 413 (498)
T KOG4328|consen 361 ------------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPH-------------- 413 (498)
T ss_pred ------------cceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeec--------------
Confidence 12233457779999999999776 9999999999999984 3222222211
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
....+..- .....+|.|+..++++|-.-..|-|||-..++.+
T Consensus 414 -n~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 414 -NNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV 455 (498)
T ss_pred -cCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence 10011111 2446789999999999999889999998875533
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=3.6e-17 Score=155.18 Aligned_cols=177 Identities=20% Similarity=0.249 Sum_probs=144.1
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|+++|..++|+|.. ++.|+|||.|.+|.||.+.... +...-.+++..+.+|...|..++|+|.-.+.|++++.|
T Consensus 78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~---l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENG---LTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred cCccccccccccCccC-CceeecCCCCceEEEEECCCcc---cccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 5899999999999986 6899999999999999998532 11222477899999999999999999988999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
..|.+|++.+++.. ... .|...|++++|+.+ |.+|++.+.|..|||||.++++
T Consensus 154 n~v~iWnv~tgeal-------------------------i~l-~hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 154 NTVSIWNVGTGEAL-------------------------ITL-DHPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceEEEEeccCCcee-------------------------eec-CCCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc
Confidence 99999999999832 111 27779999999999 7899999999999999999987
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCCccee
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~ 286 (732)
.+..- .+|.+..-..+.|-.+|.++.+|-. +.++-+||..+...+..+
T Consensus 207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence 65432 3455555667888899996655533 689999998886655433
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=8.1e-17 Score=160.04 Aligned_cols=139 Identities=20% Similarity=0.265 Sum_probs=107.3
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
..|...|..+.|.|.+ ..|++++.||+|++|++.. .........+++.++.+|.++|.|+++.+ ++..+++|+-|
T Consensus 291 ~s~~d~ir~l~~~~se--p~lit~sed~~lk~WnLqk--~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~D 365 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSE--PVLITASEDGTLKLWNLQK--AKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGID 365 (577)
T ss_pred ecchhhhhhhhcCCCC--CeEEEeccccchhhhhhcc--cCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccC
Confidence 5788999999999985 7999999999999999943 22222344578999999999999999998 55889999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
|+|+.|++....-.- -.++ .........+|...|+.+++++. ...|++++.||++|+|+.....
T Consensus 366 g~I~~w~~p~n~dp~-----------ds~d----p~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPD-----------DSYD----PSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ceeeeeccCCCCCcc-----------cccC----cchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcC
Confidence 999999886322110 0000 00112234578889999999998 6789999999999999987654
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=2.6e-16 Score=145.63 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=168.2
Q ss_pred CCceeEEEEc-------CCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCc---CeEEEEEecCCCCCEEEEEECCC
Q 004739 19 QGCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSA---NVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 19 ~~~V~~l~~s-------~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~---~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
...|+..+|- |+..++|+.+.+.-|.+||.-+|+....+ .+ |.. +..+++|+|+ |.+|++| ...
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykr 179 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKR 179 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCC--CCeEeec-ccc
Confidence 3556666664 57789999999999999999999988777 33 333 3468999999 5888865 578
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.|++||+..+...+.. .....+.-.+..+-+.+++|+|.+...++.++....+-|+.-....+
T Consensus 180 cirvFdt~RpGr~c~v--y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p--------------- 242 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPV--YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP--------------- 242 (406)
T ss_pred eEEEeeccCCCCCCcc--hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc---------------
Confidence 9999999654333210 00011112344778999999998888999999988888887666553
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCC-CcccccCCCCCCccccccccccccC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
+....+|.+.|+.+.|.++ |+.|.+|+. |..|-.||++..+. +..+ .
T Consensus 243 ----------l~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L--------------------~ 291 (406)
T KOG2919|consen 243 ----------LQLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYAL--------------------E 291 (406)
T ss_pred ----------eeeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhh--------------------h
Confidence 3334478889999999999 778888875 77899999997542 2222 2
Q ss_pred CCccc--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC-cceeeecCCCCceeeeccCC
Q 004739 245 GRSSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTL 302 (732)
Q Consensus 245 ~~~~~--~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 302 (732)
+|.+. .-.-....|++++|++|+.||.|++||+++... +..+..+.+.++.++++|.+
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence 22221 122356679999999999999999999999544 66666777788888888764
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.7e-16 Score=144.07 Aligned_cols=249 Identities=14% Similarity=0.180 Sum_probs=169.4
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
++...+.|.+|..+|++++||+||++|+|+|.|..|.+||+..|.+++++ ....+|..+.|+|.. .+..+.+-.+..
T Consensus 54 T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k-~n~~va~~~~~s 130 (405)
T KOG1273|consen 54 TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK-RNKCVATIMEES 130 (405)
T ss_pred ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeecccc-CCeEEEEEecCC
Confidence 45577889999999999999999999999999999999999999999988 467899999999985 355555544555
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
-.+-++..+...++. ...-........+..|.+ .++++++|...|.+.++|..+.+.....
T Consensus 131 p~vi~~s~~~h~~Lp------~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~------------ 191 (405)
T KOG1273|consen 131 PVVIDFSDPKHSVLP------KDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASF------------ 191 (405)
T ss_pred cEEEEecCCceeecc------CCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeee------------
Confidence 555565542221110 000000011122235777 5599999999999999999887633100
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
+ +. ....|..+-|+.. |++|+.-+.|..||.|+++.......- ..+...+.+... -.
T Consensus 192 --r------it----s~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~r~----~e~e~~~K~qDv------VN 248 (405)
T KOG1273|consen 192 --R------IT----SVQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEGRD----GEVEPEHKLQDV------VN 248 (405)
T ss_pred --e------ec----hheeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccCcc----CCcChhHHHHHH------Hh
Confidence 0 00 0236778888887 889999999999999998742211000 000111111000 01
Q ss_pred cccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecC-CCCceeeeccC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPT 301 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~ 301 (732)
..+-.+++|+.+|.|+++++. ...++||.-..|..+..+.+.. +....+.|+|.
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 114678999999999999987 4689999999988877777655 55556667764
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.3e-16 Score=154.33 Aligned_cols=185 Identities=14% Similarity=0.118 Sum_probs=122.5
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|++.|.+|...|. |..|++|+.||+|+||.+.++ .|+.... ..+.|.+|+|+|.....++..+.+
T Consensus 397 rGHtg~Vr~iSvdp~--G~wlasGsdDGtvriWEi~Tg----------Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPS--GEWLASGSDDGTVRIWEIATG----------RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eccCCeEEEEEecCC--cceeeecCCCCcEEEEEeecc----------eEEEEEe-ecceeEEEEecCCCCceeEEEEec
Confidence 799999999999997 699999999999999999984 2355555 356899999999766656565655
Q ss_pred CcEEEEECCCCCCCC------CCCCC----CcccceEEeeccCC--ccccccCCCCCccceEEEEecCCCCCEEEEEeCC
Q 004739 139 GTLRQHDFRQGSSCP------PAGSS----HQECRNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD 206 (732)
Q Consensus 139 g~i~vwd~~~~~~~~------~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d 206 (732)
..+.+-+..-+..+. ..... ........|.-... ....+.....|...|..+.|+.. |.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~ 542 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPD 542 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccC
Confidence 667777655442220 00000 01111122221100 01112233346668999999998 7899887653
Q ss_pred ---CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 207 ---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 207 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..|.|.++...+...-+ . ...+.|.++.|+|...+|++++.. .|+|||+..
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF--------------------~-kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k 596 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPF--------------------R-KSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK 596 (733)
T ss_pred CCcceEEEEecccccccCch--------------------h-hcCCceeEEEecCCCceEEEEecc-ceEEEehhH
Confidence 56888888765322111 1 112248999999999999998764 899999876
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.7e-15 Score=159.15 Aligned_cols=215 Identities=16% Similarity=0.295 Sum_probs=147.4
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
+...+-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ....|+.+.+..+.+..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445667889998888999887789999999999998887332 2467999999876556789999999999999754
Q ss_pred CCC-CCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 95 RFS-GRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 95 ~~~-~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
... ++. +.+..+.+ -.+.=.-+.|....+.++ ++|.-..|+|||......+
T Consensus 1142 ~~~~~~~------eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~~~-------------- 1200 (1387)
T KOG1517|consen 1142 ADKWKKP------ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVRSIRIWDAHKEQVV-------------- 1200 (1387)
T ss_pred ccccCCc------eeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCeeEEEEEecccceeE--------------
Confidence 321 111 11221111 111113456777665555 4555689999999876532
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
.++. .+....+++++-+-.+|+.+++|..||.||+||.+...+-.. +..+ ..|
T Consensus 1201 ~diP----------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~----------v~~~-------R~h 1253 (1387)
T KOG1517|consen 1201 ADIP----------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL----------VCVY-------REH 1253 (1387)
T ss_pred eecc----------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc----------ceee-------ccc
Confidence 1221 123336777777666689999999999999999987543211 1111 112
Q ss_pred cc-ccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004739 247 SS-LHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 247 ~~-~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~ 279 (732)
.. .+|..+.+.+.|- .|++|+.+|.|++||++.
T Consensus 1254 ~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1254 NDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred CCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 22 1388999998774 599999999999999998
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=144.34 Aligned_cols=240 Identities=15% Similarity=0.161 Sum_probs=168.4
Q ss_pred hccccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCC-cCeEEEEEecCCCCCEEEEEE
Q 004739 8 RLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~-~~V~~~~~s~~~~g~~l~s~~ 83 (732)
+++.++.+++|...++.++|.. .+..+.+++.||+|++||++......++. ..+. .+..|++..-. ++.+++|.
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck--~~ii~~Gt 136 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK--KNIIACGT 136 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc--CCeEEecc
Confidence 3567888999999999999987 45688999999999999999876655553 2344 35556655434 46777775
Q ss_pred C----CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 84 G----DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 84 ~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
. +-.|.+||++..+.. ...-...|.+.|+++.|+|.++++|+|||-||.|.++|+.....-
T Consensus 137 E~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------- 201 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------- 201 (376)
T ss_pred ccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-------
Confidence 3 567999999975421 123456799999999999999999999999999999999765311
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC-----------
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----------- 228 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~----------- 228 (732)
..+...-.+...|.++.|..++-+.|.+-+...+..+|++..+.+...+..+..
T Consensus 202 ---------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~ 266 (376)
T KOG1188|consen 202 ---------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNC 266 (376)
T ss_pred ---------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhh
Confidence 111112234557999999988556788888899999999988775444332200
Q ss_pred -----------------CCCc-----c--------ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 229 -----------------PPPC-----V--------NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 229 -----------------~~~~-----~--------~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
...| + ..........+|++..-|.++.|...+..+++|+.||.+.+|...
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 0000 0 000000011134333357888888889999999999999999864
Q ss_pred C
Q 004739 279 H 279 (732)
Q Consensus 279 ~ 279 (732)
.
T Consensus 347 d 347 (376)
T KOG1188|consen 347 D 347 (376)
T ss_pred C
Confidence 4
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=8.8e-15 Score=157.87 Aligned_cols=235 Identities=17% Similarity=0.155 Sum_probs=162.8
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------eeEEEEccCCCcCeEEEEEecCCCC
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSD 76 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~-------~~~~~~~~~h~~~V~~~~~s~~~~g 76 (732)
|..++..+..|..|...|..++.++.. .+++|||.||+|++||.... +...++ .....++.++.+.+. +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~ 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--G 1110 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--C
Confidence 445677888899999999999998754 89999999999999997632 233334 335678999999998 5
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc-C-ceeEEEEecCCCc-EEEEEeCCCcEEEEECCCCCCCC
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-R-RVKKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCP 153 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~l~~~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~ 153 (732)
+.+|.++.||.|++.++......... ..+......+. + .|..-+|...... .++.+..-+.|..||++.....
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~- 1186 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA- 1186 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-
Confidence 89999999999999999863221110 01111111121 2 2333344443333 7778888899999999887522
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 233 (732)
| ........+.|++++.+|. +.+++.|+..|.+.+||++-..++..+..
T Consensus 1187 -------------w---------~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~-------- 1235 (1431)
T KOG1240|consen 1187 -------------W---------RLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEH-------- 1235 (1431)
T ss_pred -------------H---------hhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeecccC--------
Confidence 1 1112223458999999998 78999999999999999998877666532
Q ss_pred ccccccccccCCCccccEEEEEEcCCC---CEEEEEec--CCeEEEEECCCCCCcceeeec
Q 004739 234 NYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSYS--GEHVYLMDVNHAGGRAMRYTV 289 (732)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g---~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~ 289 (732)
.+. .+|+.+..+|.. ...++++. .+.|.+|++.++.....+...
T Consensus 1236 -----------P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1236 -----------PAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred -----------ccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 122 257777777633 34555444 689999999998665555443
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=1.9e-15 Score=138.04 Aligned_cols=205 Identities=15% Similarity=0.241 Sum_probs=153.7
Q ss_pred ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 17 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 17 ~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
.+..+++++.|+. |.++|.+++-|.+..|||++++.. +++-+-.|...|..++|...+ -+.+++++.||.||+||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL 226 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence 3568999999997 778999999999999999998743 344336999999999999965 489999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
+..... ..+..-..-..+...++|++.+++++|+-..|. .|.+-|++.+..
T Consensus 227 R~leHS-------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--------------------- 278 (364)
T KOG0290|consen 227 RSLEHS-------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--------------------- 278 (364)
T ss_pred cccccc-------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---------------------
Confidence 964321 111111122457788999999999999877665 588999988763
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
.+..+.+|...|++++|.|..+..|++++.|..+-+||+.....-... ..+..+ . .+..|+
T Consensus 279 ---pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~-------dPilay-------~--a~~EVN 339 (364)
T KOG0290|consen 279 ---PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE-------DPILAY-------T--AGGEVN 339 (364)
T ss_pred ---ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC-------Cchhhh-------h--ccceee
Confidence 355667788999999999998999999999999999999865320000 001111 1 122599
Q ss_pred EEEEcC-CCCEEEEEecC
Q 004739 253 HVTFSP-NGEEVLLSYSG 269 (732)
Q Consensus 253 ~l~~sp-~g~~l~~~~~d 269 (732)
.+.|+| .+..++++...
T Consensus 340 qi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 340 QIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecccCCCEEEEEecC
Confidence 999996 55677766543
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=7.7e-15 Score=136.07 Aligned_cols=229 Identities=15% Similarity=0.187 Sum_probs=169.8
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
+.--..+|+|.+|++|++.+|.+-....|.||.....+ ..+++ ..|...|++++|+|.. +.|++|+.|..-+||
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~s--nrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPKS--NRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCCC--CceeEccCCCCcccc
Confidence 33346899999999999999999999999999876554 56666 7899999999999995 899999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
..... . .+++...+..++...+++.|+| .++.||+|+.-..|.||-++..+.- |-
T Consensus 83 ~~~~~--~-----~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW--------------WV--- 137 (361)
T KOG1523|consen 83 TQPSG--G-----TWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW--------------WV--- 137 (361)
T ss_pred ccCCC--C-----eeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccce--------------eh---
Confidence 88421 1 1456777888999999999999 5599999999999999988765421 00
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc-cc-cccCCCccc
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP-MH-LSEHGRSSL 249 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 249 (732)
...........|++++|+|+ +-+|++|+.|+.+|||..--. ....+..+ ...-...| .. ..+....++
T Consensus 138 ----sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayIK----~Vdekpap-~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 138 ----SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYIK----GVDEKPAP-TPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred ----hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEeee----ccccCCCC-CCCccCCcHHHHHHhhccCCC
Confidence 00111224558999999998 779999999999999975311 11111111 11110000 00 111213445
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
++..+.|+|+|..|+-.+.|..|.+-|...+.
T Consensus 208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 79999999999999999999999999988754
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=7.9e-14 Score=143.71 Aligned_cols=195 Identities=14% Similarity=0.157 Sum_probs=120.6
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--eEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 34 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 34 lasg~~dg~i~vWd~~~-~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
+++...++.|++||+.+ ++ .+..+ .+.+....+.++|+ +++|+.++ .++.|.+|++.. ++.. ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~ 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA 73 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence 34446789999999964 33 44444 24456788999999 47776654 588899999972 2211 111
Q ss_pred eeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004739 110 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 188 (732)
Q Consensus 110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (732)
.... .......++++|++ +++++++ .++.|.+|++.+...... .+.... ......
T Consensus 74 ~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~---------------------~~~~~~-~~~~~~ 129 (330)
T PRK11028 74 AESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA---------------------PIQIIE-GLEGCH 129 (330)
T ss_pred eeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC---------------------ceeecc-CCCccc
Confidence 1111 23356789999966 5555554 588999999964321100 000000 112456
Q ss_pred EEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004739 189 SCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 267 (732)
Q Consensus 189 ~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~ 267 (732)
.++++|+ ++++ ++...++.|.+||+.+...+..... ... ....+.....++|+|+|++|+++.
T Consensus 130 ~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~-----~~~----------~~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 130 SANIDPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEP-----AEV----------TTVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred EeEeCCC-CCEEEEeeCCCCEEEEEEECCCCcccccCC-----Cce----------ecCCCCCCceEEECCCCCEEEEEe
Confidence 7889999 5555 5555679999999986432211000 000 000011356789999999998887
Q ss_pred c-CCeEEEEECCC
Q 004739 268 S-GEHVYLMDVNH 279 (732)
Q Consensus 268 ~-dg~v~iwd~~~ 279 (732)
. ++.|.+|++..
T Consensus 194 ~~~~~v~v~~~~~ 206 (330)
T PRK11028 194 ELNSSVDVWQLKD 206 (330)
T ss_pred cCCCEEEEEEEeC
Confidence 7 89999999975
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.67 E-value=2e-16 Score=163.44 Aligned_cols=119 Identities=21% Similarity=0.376 Sum_probs=102.6
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
.+..+ .+|.++|+|+.|... |.++++|+.|..++||...+. .++....||.+.|+.++.+. +..++
T Consensus 182 ~ikrL-lgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~----------~~lAs~rGhs~ditdlavs~-~n~~i 247 (1113)
T KOG0644|consen 182 NIKRL-LGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA----------RCLASCRGHSGDITDLAVSS-NNTMI 247 (1113)
T ss_pred HHHHH-Hhhhhheeeeeeccc--cceEeecCccceeeeeeccch----------hhhccCCCCccccchhccch-hhhhh
Confidence 34444 589999999999998 699999999999999998763 34788999999999999988 44889
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
++++.|..|++|.+..+. ++....+|.+.|++++|+|- . +.+.||++++|
T Consensus 248 aaaS~D~vIrvWrl~~~~-------------------------pvsvLrghtgavtaiafsP~-~----sss~dgt~~~w 297 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGA-------------------------PVSVLRGHTGAVTAIAFSPR-A----SSSDDGTCRIW 297 (1113)
T ss_pred hhcccCceEEEEecCCCc-------------------------hHHHHhccccceeeeccCcc-c----cCCCCCceEec
Confidence 999999999999999887 34455678999999999996 2 67889999999
Q ss_pred ECC
Q 004739 213 DRR 215 (732)
Q Consensus 213 d~~ 215 (732)
|.+
T Consensus 298 d~r 300 (1113)
T KOG0644|consen 298 DAR 300 (1113)
T ss_pred ccc
Confidence 998
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=152.41 Aligned_cols=229 Identities=15% Similarity=0.208 Sum_probs=169.1
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.+.++++|+||++.|+|++|+.||+++|+|+.|..|.||..+-.. +.+ ..|.+.|.|+.|.|-. ..|+||+-+ .
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk--YSH~D~IQCMsFNP~~--h~LasCsLs-d 115 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK--YSHNDAIQCMSFNPIT--HQLASCSLS-D 115 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee--eccCCeeeEeecCchH--HHhhhcchh-h
Confidence 456789999999999999999999999999999999999854322 223 4799999999999984 889998754 4
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
.-+|...... +...+ ....+.+.+|..+ +++++.|-.+|+|.+-+-...+..
T Consensus 116 FglWS~~qK~-----------V~K~k-ss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEek~--------------- 167 (1081)
T KOG1538|consen 116 FGLWSPEQKS-----------VSKHK-SSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEEKV--------------- 167 (1081)
T ss_pred ccccChhhhh-----------HHhhh-hheeEEEeeecCC-CcEEEEeccCceEEeecCCCCcce---------------
Confidence 6688776421 22222 3457888999985 599999999999998864333211
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCC----CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc-
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS- 242 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (732)
.+..+.+...+|.+++|+|..+ ..+++.....++.++.+.. +.+.+-..-.-.|.|+.++....+.
T Consensus 168 --------~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 168 --------KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred --------EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEE
Confidence 2333445666999999999743 4688888888898888763 3333332333345677766544321
Q ss_pred -------------------cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 243 -------------------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 243 -------------------~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..|..+.+|+.++..|++++++.|+.||+|-.|++..
T Consensus 239 iGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 1234456899999999999999999999999999875
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=1.4e-15 Score=138.75 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=144.4
Q ss_pred cCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 18 HQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 18 h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
|....++-+|+| ||+.+++.+ |+++..||+++.++...+...|...|..+.|.|+. ..+|++|+.||.|+|||.+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccC
Confidence 667788889998 888888775 68999999999999998888999999999999996 57899999999999999996
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc-------eEEee
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-------NILLD 168 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~ 168 (732)
.+ .+++.+.+|...|.++.|+|...++|++++.|..|.+|....-.....+...+.... ...--
T Consensus 247 tk---------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 247 TK---------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred CC---------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 53 568999999999999999998889999999999999998765442211111111000 00001
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
+..| .+.....|...|++++|+.-++-.+|+-+.||.+.|=.+.
T Consensus 318 L~dg---~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 318 LQDG---QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccc---ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1111 2335567889999999998878888999999999886654
No 187
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.66 E-value=4.4e-15 Score=145.01 Aligned_cols=193 Identities=19% Similarity=0.257 Sum_probs=156.2
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
...+.|++|.+.|+++.++....+||+++..|.|.|-.+.++.....|..+....|.-+.|+|.. -.+|.+++.+|.|.
T Consensus 112 l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVT 190 (673)
T ss_pred HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc-ceeeEeeccCCeEE
Confidence 35678999999999999999999999999999999999999988888844445667799999985 46788899999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+||+.... ....-...|..+...|+|+|.++.+|++.+.|..|.+||++...... .+
T Consensus 191 lwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l---- 247 (673)
T KOG4378|consen 191 LWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RL---- 247 (673)
T ss_pred EEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------ee----
Confidence 99998532 12345568999999999999999999999999999999998655220 00
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCcc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
....+...++|.++ |.+|++|...|.|..||++..+ ++..+ ..|..
T Consensus 248 ------------~y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--------------------sah~~ 294 (673)
T KOG4378|consen 248 ------------TYSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTKAPVAVR--------------------SAHDA 294 (673)
T ss_pred ------------eecCCcceeeecCC-ceEEEeecCCceEEEEecccCCCCceEe--------------------eeccc
Confidence 12237789999999 8999999999999999999754 22221 44655
Q ss_pred ccEEEEEEcCCC
Q 004739 249 LHLTHVTFSPNG 260 (732)
Q Consensus 249 ~~i~~l~~sp~g 260 (732)
.|++++|-|..
T Consensus 295 -sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 -SVTRVAFQPSP 305 (673)
T ss_pred -ceeEEEeeecc
Confidence 49999998875
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.7e-14 Score=151.30 Aligned_cols=212 Identities=13% Similarity=0.130 Sum_probs=148.1
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEe-CC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWS-YS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd-~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
.|...++|.++||+++++|+|..||.|.||. .. ......++.+=|-..|++++|+++ |.+|+||+..+.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEEEEEee
Confidence 4777899999999999999999999999995 33 222333333568889999999999 699999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.+++. +-+..-..+|..+.++|++ .+.+....|..|.+-...+......+........
T Consensus 281 ~T~~k-----------qfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~---------- 338 (792)
T KOG1963|consen 281 ETGKK-----------QFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP---------- 338 (792)
T ss_pred cCCCc-----------ccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCc----------
Confidence 98652 3344457899999999965 7777778899999998766543211100000000
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
........-.+.++++|- .+.++-.+..|.|.+||+-+...+.++... ...+... .+.....++.
T Consensus 339 ----~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~------~~n~~~~----~~n~~v~ita 403 (792)
T KOG1963|consen 339 ----STKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVC------DENYSDG----DVNIQVGITA 403 (792)
T ss_pred ----cccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEE------eecccCC----cceeEEeeee
Confidence 001122335577888885 667888899999999999988777655321 1111111 1011224888
Q ss_pred EEEcCCCCEEEEEe
Q 004739 254 VTFSPNGEEVLLSY 267 (732)
Q Consensus 254 l~~sp~g~~l~~~~ 267 (732)
++.+..|.++++.-
T Consensus 404 v~~~~~gs~maT~E 417 (792)
T KOG1963|consen 404 VARSRFGSWMATLE 417 (792)
T ss_pred ehhhccceEEEEee
Confidence 88888898888763
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.6e-15 Score=144.70 Aligned_cols=202 Identities=21% Similarity=0.270 Sum_probs=149.5
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 23 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 23 ~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
.+++|+++|..|++|+.||++|||++.....+... ..|...|.++.|+|+ |++|++-+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~---- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA---- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence 78999999999999999999999998888888777 689999999999999 5999999999 899999997521
Q ss_pred CCCCCCceee--ccccCceeEEEEecCC---C-cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 103 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 103 ~~~~~~~~~~--~~h~~~v~~l~~~p~~---~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
+... ..-......+.|..++ . .+++.-..-+.|+.||+.....- ....
T Consensus 220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------------~~l~ 273 (398)
T KOG0771|consen 220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS--------------------NFLR 273 (398)
T ss_pred ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc--------------------cccc
Confidence 1111 2223345566776643 1 22333344567888777554311 0001
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
..........|++++.+++ |++++.|+.||.|.|++..+.+.+.-. . +.|.. .|+.+.|
T Consensus 274 ~~~~~~~~~siSsl~VS~d-Gkf~AlGT~dGsVai~~~~~lq~~~~v-------------k------~aH~~-~VT~ltF 332 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDD-GKFLALGTMDGSVAIYDAKSLQRLQYV-------------K------EAHLG-FVTGLTF 332 (398)
T ss_pred hhhhhhccCcceeEEEcCC-CcEEEEeccCCcEEEEEeceeeeeEee-------------h------hhhee-eeeeEEE
Confidence 1111122337999999999 899999999999999999877543322 1 44555 5999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|+.++++.-+.+....+..+.-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcCcccccccCCceeEEEEee
Confidence 99999999999999999887765
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=1.8e-14 Score=151.26 Aligned_cols=265 Identities=13% Similarity=0.130 Sum_probs=179.8
Q ss_pred cccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 10 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
.+...+. -..+|+|+.|+| +..+||.|..+|.|.+||+..+.. +......|..+|+.+.|..+..+.-+++++
T Consensus 234 ~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 234 TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 3444443 468999999999 567888899999999999987655 222234799999999999875345699999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 157 (732)
.||.|+.|+++....... ..+..... .-...+++++|.+.+++.|+.|+++|.|..=+-........
T Consensus 313 sDG~i~~W~~~~l~~P~e----~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--- 385 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVE----GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--- 385 (555)
T ss_pred cCCcEeeeeccccccchh----hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc---
Confidence 999999999885432111 00011111 22356899999999999999999999987633333221100
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCcccccCCCCCCccccc
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYF 236 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~ 236 (732)
.+ ...+..+..|.+.|+++.++|-....+.+++ |.+|+||... ...++..+
T Consensus 386 -------~~-------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~------------- 437 (555)
T KOG1587|consen 386 -------VS-------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL------------- 437 (555)
T ss_pred -------cc-------ccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh-------------
Confidence 00 1123344567789999999999666666666 9999999887 54444333
Q ss_pred cccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccC
Q 004739 237 CPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL 315 (732)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (732)
..+.. .+++++|||... .++++..||.|.|||+........... +-.......+.++
T Consensus 438 -------~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~--------------~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 438 -------DSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ--------------KVCSPALTRVRWS 495 (555)
T ss_pred -------hhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc--------------cccccccceeecC
Confidence 11222 499999999765 556666699999999987432221111 0112344556777
Q ss_pred CCccccccccccCcchhhHH
Q 004739 316 QTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 316 ~~g~~~~~~~~~~~d~~~~l 335 (732)
++|+.++ .+...|.+.+
T Consensus 496 ~~g~~la---vGd~~G~~~~ 512 (555)
T KOG1587|consen 496 PNGKLLA---VGDANGTTHI 512 (555)
T ss_pred CCCcEEE---EecCCCcEEE
Confidence 8899999 8888887776
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=1.6e-13 Score=144.25 Aligned_cols=206 Identities=18% Similarity=0.162 Sum_probs=136.4
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 120 (732)
+.+.||++......... ......|+|+.|+|.. ..+++.|..+|.|.+||++....... ...-.....|..+++
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcCeE
Confidence 47999999877333333 2567889999999986 68999999999999999997544211 111223446899999
Q ss_pred EEEEecCCC-cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004739 121 KLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 199 (732)
Q Consensus 121 ~l~~~p~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 199 (732)
.+.|..+.. .-|++++.||.|..|+++.-..+.......... ...........+++++|.+.+.+.
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~-------------~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK-------------HKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc-------------ccccccccccceeeEeeccCCCce
Confidence 999976332 347799999999999887665432111111000 001111234478999999988999
Q ss_pred EEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 200 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 200 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
+++|+.+|.|.--+....+.-.. ..+.+ +.....|.+ +|+++.++|-+..++..+.|.+|+||...
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~-----------~~~~~-~~~~~~h~g-~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPE-----------VSYKG-HSTFITHIG-PVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred EEEEcCCcEEEEEeccCCccccc-----------ccccc-cccccccCc-ceEeeecCCCccceeeeeccceeEecccc
Confidence 99999999998744433321110 00101 101123434 69999999988777777779999999765
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=2.2e-13 Score=146.45 Aligned_cols=163 Identities=26% Similarity=0.419 Sum_probs=119.2
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc-CceeEEEE-ecCCCcEEEEEe
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAV-EVGNPHVVWSAS 136 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~p~~~~~l~s~s 136 (732)
..|...+.++.|.+. +..++.++.|+.+.+|+..... ..+..+.++. ..+..+.+ .++....++..+
T Consensus 62 ~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (466)
T COG2319 62 RGHEDSITSIAFSPD--GELLLSGSSDGTIKLWDLDNGE---------KLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130 (466)
T ss_pred eeccceEEEEEECCC--CcEEEEecCCCcEEEEEcCCCc---------eeEEEEeccCCCceeeEEEECCCcceEEeccC
Confidence 578999999999998 4888888899999999998642 1245555533 36777777 675543555544
Q ss_pred C-CCcEEEEECCC-CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEE
Q 004739 137 E-DGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYD 213 (732)
Q Consensus 137 ~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd 213 (732)
. |+.+.+|+... .. .......|...|..++|+|+ +..+++++. |+.+++|+
T Consensus 131 ~~d~~~~~~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 131 SLDGTVKLWDLSTPGK-------------------------LIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWD 184 (466)
T ss_pred CCCccEEEEEecCCCe-------------------------EEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEE
Confidence 5 99999999987 22 11222345668889999999 668888875 99999999
Q ss_pred CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004739 214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~ 279 (732)
+.....+..+ .+|.. .|.+++|+|++. .+++++.|+.|++||...
T Consensus 185 ~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 185 LRTGKPLSTL--------------------AGHTD-PVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred cCCCceEEee--------------------ccCCC-ceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 9975443332 33444 599999999998 455558899999997664
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.62 E-value=3.1e-15 Score=147.41 Aligned_cols=196 Identities=16% Similarity=0.310 Sum_probs=149.7
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.+..++.+....|.+.|.|-.|+|||.-|+|++.||.|++|. ++|-...++ .....+|.|++|.|++ .+.+++.+
T Consensus 91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g-- 165 (737)
T KOG1524|consen 91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQG-- 165 (737)
T ss_pred cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHH-hhcCceeEEEEECCCC-CceEEecC--
Confidence 455667778889999999999999999999999999999998 455444444 4567889999999997 34555433
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+.+.|=-+... ..+-..+.|.+-|.++.|+|.. +++++|++|-..++||-...
T Consensus 166 ~h~~IKpL~~n----------~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~---------------- 218 (737)
T KOG1524|consen 166 GHISIKPLAAN----------SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA---------------- 218 (737)
T ss_pred CeEEEeecccc----------cceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc----------------
Confidence 45555555432 1256788999999999999955 99999999999999997543
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.....|..+|++++|+|+ ..++.++. +++|+=.++.
T Consensus 219 ----------~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~~----------------------------- 256 (737)
T KOG1524|consen 219 ----------NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPRV----------------------------- 256 (737)
T ss_pred ----------ccccCChhccceeeeeeccc--cceeeeee-eeeeecCCCc-----------------------------
Confidence 24445568889999999998 46666664 4566322221
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
+ .|..++||+||..+++|+..|.|.+--+-
T Consensus 257 --G-SifnlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 257 --G-SIFNLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred --c-ceEEEEEcCCCceeeccccCceEEEeeee
Confidence 1 59999999999999999999987665443
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.5e-14 Score=135.15 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=69.3
Q ss_pred cceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEe-cCcccEEEEeecCCCCeEEEecCCCcE
Q 004739 584 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGIDNTI 662 (732)
Q Consensus 584 ~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~-gH~~~V~~v~fsp~~~~l~S~s~D~~i 662 (732)
..+....+ +.++++. .|+||+|+|-|+.||.|-|++..+-++++..+ +|..-||+|.|+||.+++++.+.|.++
T Consensus 274 ~~~~~~~~-~siSsl~----VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 274 LRKKIKRF-KSISSLA----VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred hhhhhhcc-CcceeEE----EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence 33333334 2445555 69999999999999999999999999887664 699999999999999999999999999
Q ss_pred EEEcCCCCCC
Q 004739 663 KIWTPSASVP 672 (732)
Q Consensus 663 ~vW~~~~~~~ 672 (732)
.|-.+.-...
T Consensus 349 ~v~~l~vd~~ 358 (398)
T KOG0771|consen 349 AVTKLAVDKT 358 (398)
T ss_pred eEEEEeeccc
Confidence 9988876443
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=7e-14 Score=151.06 Aligned_cols=193 Identities=18% Similarity=0.260 Sum_probs=131.8
Q ss_pred EeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004739 46 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125 (732)
Q Consensus 46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 125 (732)
|++ .|..+..+ ..|...|..++.++.. +.+++||+.||+|++|+++...+.. .......++......+.++.+.
T Consensus 1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence 553 46777777 7899999999998875 5899999999999999998644431 0112223333346788899998
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCC-EEEEEe
Q 004739 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG 204 (732)
Q Consensus 126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~ 204 (732)
+ +++.+|.++.||.|++.++......... + ..............|..-+|...... .++.+.
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~~~------~----------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSKRV------A----------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEccccccccce------e----------eeeecccccCCCceEEeecccccccceeEEEEE
Confidence 8 5588999999999999998774211000 0 00001111111113333344433334 788888
Q ss_pred CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 205 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 205 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
..+.|..||+++...+..++.. . .++ .|++++.+|.+.++++|+..|.+-+||++=.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~-----------------~-~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQ-----------------L-RHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred eccceEEecchhhhhHHhhhcC-----------------c-ccc-ceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 8999999999987654433211 1 222 5999999999999999999999999999863
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=133.92 Aligned_cols=227 Identities=10% Similarity=0.091 Sum_probs=152.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
-++|||+|+++|+.+.- .+.|-|..+.+..+.+ ..-..|..+.|..++ -..|.....|+.|.+|++..+.-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qpew----- 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQPEW----- 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeeccee-----
Confidence 46799999999999764 7888898887766555 234568889999885 24455557789999999986432
Q ss_pred CCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004739 104 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 183 (732)
Q Consensus 104 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (732)
...+......+.++.|+|++.+++.+..-+-.|.+|.+.+.+.. ....+++
T Consensus 84 -----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~------------------------~~~~pK~ 134 (447)
T KOG4497|consen 84 -----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY------------------------LLPHPKT 134 (447)
T ss_pred -----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE------------------------Eeccccc
Confidence 34566677889999999988788888899999999999886521 1112222
Q ss_pred ccceEEEEecCCCCCEEEEEeCCCe---EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004739 184 TLSLKSCDISSTRPHLLLVGGSDAF---ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 184 ~~~v~~i~~~~~~~~~l~tg~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g 260 (732)
.+..++|+|+ |++.+..+.-.. +.|..-.....+..+ .-... ..+.+.|+|||
T Consensus 135 --~~kg~~f~~d-g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f--------------------~~dT~-DltgieWsPdg 190 (447)
T KOG4497|consen 135 --NVKGYAFHPD-GQFCAILSRRDCKDYVQISSCKAWILLKEF--------------------KLDTI-DLTGIEWSPDG 190 (447)
T ss_pred --CceeEEECCC-CceeeeeecccHHHHHHHHhhHHHHHHHhc--------------------CCCcc-cccCceECCCC
Confidence 4578999999 778877765311 111111111111111 00111 36789999999
Q ss_pred CEEEEEec--CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHH
Q 004739 261 EEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEI 338 (732)
Q Consensus 261 ~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~ 338 (732)
..|++-.. +-.|+.|.-.. .+..++++|-++.++ .++.|+..++...
T Consensus 191 ~~laVwd~~Leykv~aYe~~l----------------------------G~k~v~wsP~~qfla---vGsyD~~lrvlnh 239 (447)
T KOG4497|consen 191 NWLAVWDNVLEYKVYAYERGL----------------------------GLKFVEWSPCNQFLA---VGSYDQMLRVLNH 239 (447)
T ss_pred cEEEEecchhhheeeeeeecc----------------------------ceeEEEeccccceEE---eeccchhhhhhce
Confidence 97776433 33444443322 345567888889999 9999999998655
Q ss_pred HHhhh
Q 004739 339 ARNSL 343 (732)
Q Consensus 339 ~~~~~ 343 (732)
..|..
T Consensus 240 ~tWk~ 244 (447)
T KOG4497|consen 240 FTWKP 244 (447)
T ss_pred eeeee
Confidence 55543
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=3.7e-14 Score=135.70 Aligned_cols=128 Identities=23% Similarity=0.373 Sum_probs=105.5
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--------C-----C--eeEEEEccCCCcCeEEEEEecC
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S-----R--KLLHSIETGHSANVFCTKFVPE 73 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--------~-----~--~~~~~~~~~h~~~V~~~~~s~~ 73 (732)
.+....|..|...|+++.|+|+|.+||+|+.+|.|.+|... + . -.+.....+|...|..++|+|+
T Consensus 55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 34556788999999999999999999999999999999765 2 1 1233334789999999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 74 ~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
+.++++++-|..+++||+..+.. ...+.+|...+..++|.|-+ +++++-+.|...+.+.+...
T Consensus 135 --~~~l~s~s~dns~~l~Dv~~G~l----------~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 135 --SNFLVSGSVDNSVRLWDVHAGQL----------LAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred --CceeeeeeccceEEEEEecccee----------Eeeccccccccceeecchhh-hhhhhhccCcccceeeeeee
Confidence 49999999999999999997532 67788899999999999954 88888888876666665443
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.4e-13 Score=144.46 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=143.5
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE-ECCCc
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAE 87 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~dg~ 87 (732)
.+.+..|...+...+|+|||++|+.++.+ ..|++||+.+++..... ...+....++|+|+ |+.|+.+ +.+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPD--G~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPD--GSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCC--CCEEEEEEecCCc
Confidence 45677888899999999999999987653 46999999887543221 12223457899999 4777765 46887
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
+.||.+....+. ...+..+...+....|+|++..+++++..++...+|++......
T Consensus 272 ~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~--------------- 327 (429)
T PRK01742 272 LNIYVMGANGGT---------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG--------------- 327 (429)
T ss_pred EEEEEEECCCCC---------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------------
Confidence 776644321121 34455566778899999976444555556788888887543211
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
...+ . +.. ....|+|+ ++.|+..+.++ +.+||+.+++..... ...
T Consensus 328 ------~~~l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~lt--------------------~~~- 372 (429)
T PRK01742 328 ------ASLV-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEVLS--------------------STF- 372 (429)
T ss_pred ------eEEe-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEEec--------------------CCC-
Confidence 0001 0 111 34679999 77888777765 556999876421100 001
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECC--CCCCcceeeecCCCCceeeeccC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPT 301 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~ 301 (732)
...++.|+|+|++|+.++.++.+.+|.+. +++....+..+.......+|+|.
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 12357899999999999999988888764 33433333333444445555553
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.9e-13 Score=120.73 Aligned_cols=216 Identities=15% Similarity=0.165 Sum_probs=146.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCC---------Ce-eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~---------~~-~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
..|.+-+|+|.+++|+.|..+|+|.+..+.. ++ .+..+ ++|+++|+.++|.. .+|++|+ ||.|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEE
Confidence 4566778999999999999999999998753 22 33333 79999999999994 4777776 59999
Q ss_pred EEEcCCCCCC--CCCC-CCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 90 LFNLSRFSGR--GLDD-NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 90 vwd~~~~~~~--~~~~-~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
-|..+..... +... ....|.+.-.-.--.|+++...|..+. ++.++.|+.++.||+++++
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~---------------- 147 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGR---------------- 147 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCE----------------
Confidence 9987643210 0000 000111110111235899999996644 4456689999999999987
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
......+|...|.++.--.. ...+++|+.||++|+||.++.+.+..+.. ...+.|+ ..|
T Consensus 148 ---------i~r~~rGHtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie~-yk~~~~l----------Rp~ 206 (325)
T KOG0649|consen 148 ---------IQREYRGHTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIEP-YKNPNLL----------RPD 206 (325)
T ss_pred ---------EEEEEcCCcceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEecc-ccChhhc----------Ccc
Confidence 22345678889999988443 34799999999999999999876655421 1111221 224
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 282 (732)
-+.+|-+++. +..+|++|+. ..+.+|+++..+.
T Consensus 207 ~g~wigala~--~edWlvCGgG-p~lslwhLrsse~ 239 (325)
T KOG0649|consen 207 WGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSES 239 (325)
T ss_pred cCceeEEEec--cCceEEecCC-CceeEEeccCCCc
Confidence 4446777765 4557777654 5899999998553
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.4e-13 Score=142.46 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=108.9
Q ss_pred CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeecccc
Q 004739 40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT 116 (732)
Q Consensus 40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 116 (732)
+..|.|||..... ...+ ..|...+....|+|+ |+.|+.++.+ ..|++||+.++... .+..+.+|
T Consensus 183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~~--------~l~~~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGARK--------VVASFRGH- 249 (429)
T ss_pred eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCceE--------EEecCCCc-
Confidence 4689999986554 4445 578888999999999 5888877653 36999999864321 12333333
Q ss_pred CceeEEEEecCCCcEEEE-EeCCCcEEEE--ECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004739 117 RRVKKLAVEVGNPHVVWS-ASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 193 (732)
Q Consensus 117 ~~v~~l~~~p~~~~~l~s-~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 193 (732)
...++|+|++ +.|+. .+.+|.+.|| |+.+++.. .+ ..+...+....|+
T Consensus 250 --~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~~-----------------------~l---t~~~~~~~~~~wS 300 (429)
T PRK01742 250 --NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTPS-----------------------QL---TSGAGNNTEPSWS 300 (429)
T ss_pred --cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCeE-----------------------ee---ccCCCCcCCEEEC
Confidence 3468999966 55554 4578876665 55443310 11 1123356788999
Q ss_pred CCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeE
Q 004739 194 STRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 272 (732)
Q Consensus 194 ~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v 272 (732)
|+ ++.|+ ++..++..+||+++........ .++.. ....|+|+|++|+..+.++ +
T Consensus 301 pD-G~~i~f~s~~~g~~~I~~~~~~~~~~~~--------------------l~~~~---~~~~~SpDG~~ia~~~~~~-i 355 (429)
T PRK01742 301 PD-GQSILFTSDRSGSPQVYRMSASGGGASL--------------------VGGRG---YSAQISADGKTLVMINGDN-V 355 (429)
T ss_pred CC-CCEEEEEECCCCCceEEEEECCCCCeEE--------------------ecCCC---CCccCCCCCCEEEEEcCCC-E
Confidence 99 56555 4446788888887543211000 01111 3467999999998887754 4
Q ss_pred EEEECCC
Q 004739 273 YLMDVNH 279 (732)
Q Consensus 273 ~iwd~~~ 279 (732)
.+||+.+
T Consensus 356 ~~~Dl~~ 362 (429)
T PRK01742 356 VKQDLTS 362 (429)
T ss_pred EEEECCC
Confidence 5577766
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1e-12 Score=124.80 Aligned_cols=258 Identities=12% Similarity=0.078 Sum_probs=174.5
Q ss_pred hhhhc-cccEeeecc-CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC---cCeEEEEEecCCCCCEE
Q 004739 5 LVRRL-SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS---ANVFCTKFVPETSDELV 79 (732)
Q Consensus 5 ~~~~~-~~~~~l~~h-~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~---~~V~~~~~s~~~~g~~l 79 (732)
+.++. +++.....| ...|.|++|....++|.+|+.+++|.+-|+++.+.+..+ .|. +.|+.+..+|. ++.|
T Consensus 89 ~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~--~~~~~~~~VY~m~~~P~--DN~~ 164 (609)
T KOG4227|consen 89 MVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA--NENNNRGDVYHMDQHPT--DNTL 164 (609)
T ss_pred HhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee--cccCcccceeecccCCC--CceE
Confidence 33343 677666544 489999999999999999999999999999999998887 444 48999999998 4899
Q ss_pred EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC-
Q 004739 80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS- 158 (732)
Q Consensus 80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~- 158 (732)
++.+.++.|.+||.+...... . ...+.........+.|+|..+.+|++.+..+-+.+||++..........+
T Consensus 165 ~~~t~~~~V~~~D~Rd~~~~~------~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~ 237 (609)
T KOG4227|consen 165 IVVTRAKLVSFIDNRDRQNPI------S-LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMF 237 (609)
T ss_pred EEEecCceEEEEeccCCCCCC------c-eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcc
Confidence 999999999999998644221 1 22233345567889999999999999999999999999887643111100
Q ss_pred ---Cc----------------------ccceEEeeccCCccccccCCCC-----CccceEEEEecCCCCCEEEEEeCCCe
Q 004739 159 ---HQ----------------------ECRNILLDLRCGAKRSLADPPK-----QTLSLKSCDISSTRPHLLLVGGSDAF 208 (732)
Q Consensus 159 ---~~----------------------~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~tg~~dg~ 208 (732)
.. ...-.++++.......+..... ....+.+++|..+ +-+++|+.+-.
T Consensus 238 ~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~ 315 (609)
T KOG4227|consen 238 KGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWG 315 (609)
T ss_pred ccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccc
Confidence 00 0001222332222222221111 1235667888765 46999999999
Q ss_pred EEEEECCCCCCCcccccC------CCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 209 ARLYDRRMLPPLTSCQKR------MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 209 v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|++|.+.....-..+... ++....+. .......||.. -++.+.|+|...+|++++-...++||.-..
T Consensus 316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~---~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE---KELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred eEEEecCCCccccCccccCcchhhCchhheec---ceeEEEecccc-cccceeecCCcceEeccchhhheecccccc
Confidence 999998654332222111 11100110 11112267777 489999999999999999999999996554
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.9e-13 Score=143.08 Aligned_cols=212 Identities=16% Similarity=0.259 Sum_probs=157.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
-+.|.....+|.++|.-..|+|||....++++.+..+....|+++.-+... |+.|+.|..||.|++||.+.....
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d---- 1244 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD---- 1244 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc----
Confidence 456776555566666678999999999999998877777888988877665 799999999999999999975443
Q ss_pred CCCCCceeeccccCc--eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 104 NAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 104 ~~~~~~~~~~~h~~~--v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
..+...+.|++. |..+.+.+.+-..|++|+.||.|++||++...... .. .+..+-
T Consensus 1245 ---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~------------~~--------~iv~~~ 1301 (1387)
T KOG1517|consen 1245 ---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET------------FL--------TIVAHW 1301 (1387)
T ss_pred ---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc------------cc--------eeeecc
Confidence 237788889888 99999999666679999999999999999853110 00 000001
Q ss_pred CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004739 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 261 (732)
Q Consensus 182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 261 (732)
.....++++..+++ ...+|+|+. +.|+||++...+ +..+.. . +.. .+.....+.+++|||---
T Consensus 1302 ~yGs~lTal~VH~h-apiiAsGs~-q~ikIy~~~G~~-l~~~k~----------n-~~F---~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEH-APIIASGSA-QLIKIYSLSGEQ-LNIIKY----------N-PGF---MGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ccCccceeeeeccC-CCeeeecCc-ceEEEEecChhh-hccccc----------C-ccc---ccCcCCCcceeeecchhH
Confidence 11124889999998 678999887 999999987433 333211 0 111 223333589999999999
Q ss_pred EEEEEecCCeEEEEECCCC
Q 004739 262 EVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~~ 280 (732)
+|++|+.|..|.||....+
T Consensus 1365 llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhhccCCceEEEeecCCc
Confidence 9999999999999987764
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.9e-12 Score=123.46 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=131.9
Q ss_pred ccccEe-eeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCC---------C-eeEEEEccCCCcCeEEEEEecCCC
Q 004739 9 LSQERE-LEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSS---------R-KLLHSIETGHSANVFCTKFVPETS 75 (732)
Q Consensus 9 ~~~~~~-l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~---------~-~~~~~~~~~h~~~V~~~~~s~~~~ 75 (732)
.|+++. -+||...|.++.|-| +.+.++||..|..|+|+|+.. . .....+ ..|...|..++-.|+.
T Consensus 82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~- 159 (758)
T KOG1310|consen 82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNG- 159 (758)
T ss_pred cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-hhhhhhhhheecCCCC-
Confidence 344444 468999999999999 457899999999999999984 2 223333 6799999999999986
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 155 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 155 (732)
.+.+.++++||+|+-+|++.+............+..+...--...++..+|..+.+|+.|+.|-..++||.+...+....
T Consensus 160 PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s 239 (758)
T KOG1310|consen 160 PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRS 239 (758)
T ss_pred CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCC
Confidence 48999999999999999996432111000001112222233567899999999999999999999999996554332111
Q ss_pred CCCCcc-------cceEEeeccCCccccccC-CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004739 156 GSSHQE-------CRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 156 ~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~ 220 (732)
...+.. |...+. .++...... .......++-+.|+|++. -|++.-..-.|+++|+...+..
T Consensus 240 ~~~~~~~pp~~~~cv~yf~---p~hlkn~~gn~~~~~~~~t~vtfnpNGt-ElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 240 DGTMNTCPPKDCRCVRYFS---PGHLKNSQGNLDRYITCCTYVTFNPNGT-ELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CccccCCCCcccchhheec---CccccCcccccccceeeeEEEEECCCCc-EEEEeeCCeEEEEEeecCCCCc
Confidence 111111 111111 011000000 001111356788999954 4444444558999999987644
No 204
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=5.1e-12 Score=130.23 Aligned_cols=267 Identities=9% Similarity=0.114 Sum_probs=160.4
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEE-
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA- 83 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~-~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~- 83 (732)
++.++.+. +.+....++++|++++|++++ .++.|.+|++. +++. +... ........+.|+|+ +++|++++
T Consensus 25 l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~--g~~l~v~~~ 99 (330)
T PRK11028 25 LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQ--GRFLFSASY 99 (330)
T ss_pred eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCC--CCEEEEEEc
Confidence 34555554 346678899999999887664 57899999986 3432 2222 23345678999999 47777766
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.++.|.+|++... +... ..+..+. +......++++|++..++++...++.|.+||+.+...+....
T Consensus 100 ~~~~v~v~~~~~~-g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~------- 165 (330)
T PRK11028 100 NANCVSVSPLDKD-GIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE------- 165 (330)
T ss_pred CCCeEEEEEECCC-CCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-------
Confidence 4899999999742 1110 1122222 234467788999764555666677999999997633210000
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCC-CCcccccCCCCCCcccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
........+ .....+.|+|+ +++++++.. ++.|.+||++... .+..... +... +...
T Consensus 166 ----------~~~~~~~~g--~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~-------~~~~-p~~~ 224 (330)
T PRK11028 166 ----------PAEVTTVEG--AGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQT-------LDMM-PADF 224 (330)
T ss_pred ----------CCceecCCC--CCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEE-------EecC-CCcC
Confidence 000000011 13467899999 677766665 8999999997421 1111100 0000 0000
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccc
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIR 320 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (732)
.+ ......+.|+|+|++|+++.. ++.|.+|++.......... ...+.. ..+..+.++|||++
T Consensus 225 --~~--~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~---------~~~~~~----~~p~~~~~~~dg~~ 287 (330)
T PRK11028 225 --SD--TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE---------GHQPTE----TQPRGFNIDHSGKY 287 (330)
T ss_pred --CC--CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe---------EEEecc----ccCCceEECCCCCE
Confidence 01 112446899999999999865 7899999997643221111 111110 23456789999998
Q ss_pred cccccccC-cchhhHH
Q 004739 321 VRGEVATG-LGKCRML 335 (732)
Q Consensus 321 ~~~~~~~~-~d~~~~l 335 (732)
+. .+. .++++.+
T Consensus 288 l~---va~~~~~~v~v 300 (330)
T PRK11028 288 LI---AAGQKSHHISV 300 (330)
T ss_pred EE---EEEccCCcEEE
Confidence 87 444 4777777
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.9e-12 Score=115.55 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=126.0
Q ss_pred cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004739 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 142 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 142 (732)
..|..-+++|. +++|+.|+.+|.|.+..+..............++...++|.++|+.++|+. .+|++|+ ||.|+
T Consensus 11 ~tvf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 11 NTVFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVY 84 (325)
T ss_pred HHHHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEE
Confidence 34677789998 599999999999999998754322222222345667789999999999973 5677776 49999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004739 143 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 222 (732)
Q Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~ 222 (732)
-|..+..... ...+.+|...... .........|++|...|.. +-++.++.|+.++.||+.+++....
T Consensus 85 gw~W~E~~es--------~~~K~lwe~~~P~----~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 85 GWEWNEEEES--------LATKRLWEVKIPM----QVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred Eeeehhhhhh--------ccchhhhhhcCcc----ccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEE
Confidence 9987765421 0111222221111 1101122378999999984 4555556899999999999875544
Q ss_pred cccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004739 223 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 282 (732)
+ .||.+ .|.+++--.....+++|+.||++|+||.++++.
T Consensus 152 ~--------------------rGHtD-YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 152 Y--------------------RGHTD-YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred E--------------------cCCcc-eeeeeeecccCcceeecCCCccEEEEeccccce
Confidence 4 78888 599998855555699999999999999999653
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=2.5e-13 Score=122.71 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=154.1
Q ss_pred hhccccEeee-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------------eEEEEc-------------
Q 004739 7 RRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--------------LLHSIE------------- 58 (732)
Q Consensus 7 ~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--------------~~~~~~------------- 58 (732)
++.+..-.++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+. |...+.
T Consensus 43 qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp 121 (323)
T KOG0322|consen 43 QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYP 121 (323)
T ss_pred ecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecC
Confidence 3444455566 46788998888887 457788899999999986421 111100
Q ss_pred -------------------------cCCCcCeEEEEEecCCC-CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004739 59 -------------------------TGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 112 (732)
Q Consensus 59 -------------------------~~h~~~V~~~~~s~~~~-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 112 (732)
.+..+.+.|..+..... --+++.|-++|.+.+||+.+.....--....+.....
T Consensus 122 ~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ 201 (323)
T KOG0322|consen 122 SRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN 201 (323)
T ss_pred CcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccch
Confidence 12234566666443321 1256777889999999999752211111112334556
Q ss_pred ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004739 113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 192 (732)
Q Consensus 113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 192 (732)
..|..+|.++.+.+.. ..=++|+.+..+..|.+........ -+ .+..-....|..+..
T Consensus 202 ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq----------------~~-----~e~~lknpGv~gvrI 259 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQ----------------IR-----KEITLKNPGVSGVRI 259 (323)
T ss_pred hhccCcceeeeechhh-cCCcCCCccccceeeeeccccCccc----------------cc-----ceEEecCCCccceEE
Confidence 6799999999998754 3334777888899999876531100 00 000011225677888
Q ss_pred cCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeE
Q 004739 193 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV 272 (732)
Q Consensus 193 ~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v 272 (732)
-|| ++.+|+++.|+.||||..++.+++..+ .-|.. .|++++|+|+...+++++.|+.|
T Consensus 260 RpD-~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-gvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 260 RPD-GKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-GVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred ccC-CcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-ceeEEEeCCCCchhhhccCCceE
Confidence 898 889999999999999999999887765 44665 59999999999999999999999
Q ss_pred EEEEC
Q 004739 273 YLMDV 277 (732)
Q Consensus 273 ~iwd~ 277 (732)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=1.4e-11 Score=116.94 Aligned_cols=218 Identities=19% Similarity=0.287 Sum_probs=147.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCcCeEEEEEecCCCCCEEEEEE--CCCcEEEEEcC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLS 94 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~~V~~~~~s~~~~g~~l~s~~--~dg~i~vwd~~ 94 (732)
..+|.++.++ .++|++.-.+ .|+|||+++++.++++..- +...+.++++++. +.+++-=+ ..|.|.|||+.
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEEEEcc
Confidence 3456666665 3467776654 4999999999999988543 4444555544444 45766432 36889999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
+. .++..+..|.+.+-+++|+++| .+|||+++.|+ |||+.+.+++. ++.++.|.
T Consensus 162 nl----------~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~k--------------l~eFRRG~ 216 (391)
T KOG2110|consen 162 NL----------QPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQK--------------LYEFRRGT 216 (391)
T ss_pred cc----------eeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccE--------------eeeeeCCc
Confidence 63 4478888999999999999954 99999999997 78999988873 33333332
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC---------------CCC-------
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------PPP------- 231 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~------- 231 (732)
....|.+++|+|+ +.+|++.+..++|+||.+.... ......+.. .|.
T Consensus 217 ---------~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~ 285 (391)
T KOG2110|consen 217 ---------YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLD 285 (391)
T ss_pred ---------eeeEEEEEEECCC-CCeEEEecCCCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhh
Confidence 1347899999999 7899999999999999987654 111110000 000
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+.|...++...++. .+..+.-.+...++.+++.||.++.|.+.-
T Consensus 286 ~~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 286 QSRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0011212222222221 133343335778999999999999998875
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=3.8e-12 Score=120.81 Aligned_cols=195 Identities=12% Similarity=0.167 Sum_probs=143.6
Q ss_pred ceeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
.|--+-|+. .++|..+.+ +.+++.+++.+..++.+ .....|.++.+..+ +|+.+-.+. |.|||++...
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~--~fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~Mk- 117 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEI--FFPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMK- 117 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEE--ecCCceEEEEEccc----eEEEEEccc-EEEEecccce-
Confidence 344555653 455555543 45899999999988887 35667999999875 566666554 9999999742
Q ss_pred CCCCCCCCCCceeec---cccCceeEEEEecCCCcEEEE-E-eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 99 RGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWS-A-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s-~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
+++++. .+...+.++.+++.+ .+++- + ...|.|.+||+.+-+.
T Consensus 118 ---------lLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~~---------------------- 165 (391)
T KOG2110|consen 118 ---------LLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQP---------------------- 165 (391)
T ss_pred ---------eehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEccccee----------------------
Confidence 344443 344455555555533 45553 2 2458899999887652
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
+.....|.+.+.+++|+++ |.+|||++..|+ |||+.+.+++.+..++ .|-....|.
T Consensus 166 ---v~~I~aH~~~lAalafs~~-G~llATASeKGTVIRVf~v~~G~kl~eFR-------------------RG~~~~~Iy 222 (391)
T KOG2110|consen 166 ---VNTINAHKGPLAALAFSPD-GTLLATASEKGTVIRVFSVPEGQKLYEFR-------------------RGTYPVSIY 222 (391)
T ss_pred ---eeEEEecCCceeEEEECCC-CCEEEEeccCceEEEEEEcCCccEeeeee-------------------CCceeeEEE
Confidence 3333468889999999999 899999999887 8999999998877764 333334699
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+++|+|++++|.+.+..++|+||.+...
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999999999999999999999873
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1e-13 Score=134.84 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=160.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
..+-+.+.++.+|++|+.|+..|.|-.+|+.+++....+ .-...|.++.|..+. ++++. .....+.|||-..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHne--q~~AV-AQK~y~yvYD~~G--- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHNE--QFFAV-AQKKYVYVYDNNG--- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcch--HHHHh-hhhceEEEecCCC---
Confidence 445567899999999999999999999999999998888 345679999999883 55554 5678899998662
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
..++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+.
T Consensus 201 --------tElHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa------------------------- 245 (545)
T KOG1272|consen 201 --------TELHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVA------------------------- 245 (545)
T ss_pred --------cEEeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechhhhhH-------------------------
Confidence 225666654 568899999955 788899999999999999998431
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
...-..+.+..|.-+|- ...+-+|..+|+|.+|...+.+++.++ ..|.+ +|.++++.+
T Consensus 246 ~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~ 303 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDR 303 (545)
T ss_pred HHHccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECC
Confidence 11223346677788887 458889999999999999998877665 33555 699999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCc
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
+|+|+++++.|..++|||+++...+
T Consensus 304 ~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 304 GGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred CCcEEeecccccceeEeeecccccc
Confidence 9999999999999999999996533
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=4.3e-11 Score=122.83 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=121.6
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004739 32 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 110 (732)
Q Consensus 32 ~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 110 (732)
+++ ++-..++.|.|.|..+.+.+.++. .....-..+.|+|+ |++++.++.||.|.++|+.+.+ .+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~-~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~----------~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIP-TGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGK----------VVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE--STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSS----------EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEc-CCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCccc----------EEE
Confidence 344 455678999999999999999994 33333455789999 5899999999999999999743 255
Q ss_pred eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004739 111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 190 (732)
Q Consensus 111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 190 (732)
..+. .....++++++++..+++++...+.+.++|.++.+.. ..+..+... .......+.++
T Consensus 73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v--------------~~I~~~~~~----~~~~~~Rv~aI 133 (369)
T PF02239_consen 73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV--------------KTIPTGGMP----VDGPESRVAAI 133 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE--------------EEEE--EE-----TTTS---EEEE
T ss_pred EEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce--------------eeccccccc----ccccCCCceeE
Confidence 5553 4557889999976444445567899999999887632 111111000 00123366778
Q ss_pred EecCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-c
Q 004739 191 DISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-S 268 (732)
Q Consensus 191 ~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~ 268 (732)
..+|. ...++..-. -+.|.+-|....+.+..- .. ..+.......|+|++++++++. .
T Consensus 134 v~s~~-~~~fVv~lkd~~~I~vVdy~d~~~~~~~-----------~i---------~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 134 VASPG-RPEFVVNLKDTGEIWVVDYSDPKNLKVT-----------TI---------KVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp EE-SS-SSEEEEEETTTTEEEEEETTTSSCEEEE-----------EE---------E--TTEEEEEE-TTSSEEEEEEGG
T ss_pred EecCC-CCEEEEEEccCCeEEEEEecccccccee-----------ee---------cccccccccccCcccceeeecccc
Confidence 78887 454555555 478888887765432110 00 1111467899999999887764 4
Q ss_pred CCeEEEEECCCCCC
Q 004739 269 GEHVYLMDVNHAGG 282 (732)
Q Consensus 269 dg~v~iwd~~~~~~ 282 (732)
++.|-++|.++.+.
T Consensus 193 sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 193 SNKIAVIDTKTGKL 206 (369)
T ss_dssp GTEEEEEETTTTEE
T ss_pred cceeEEEeeccceE
Confidence 78999999988543
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=5.9e-12 Score=118.97 Aligned_cols=251 Identities=14% Similarity=0.152 Sum_probs=161.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
+..+..++|++.-..+|++..|-.|++||-.. ++...+.......|+|++|-|.+ +..|+.|+..| |.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCcccc
Confidence 45788899999777889999999999999666 56556645567889999999997 67788777654 89998764211
Q ss_pred CCC--C--CCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 99 RGL--D--DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 99 ~~~--~--~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
... + ......+....+| ..|+++.|.+++ ..+++++ .|..|+|||..++.....
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL------------------- 233 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPL------------------- 233 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccc-------------------
Confidence 110 0 0001123334455 689999999976 6666665 467899999998874311
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
.+...+.++-+.|+|| +.+|.++.-|+..++|......-.... . - ..+ .|..
T Consensus 234 ------~~~glgg~slLkwSPd-gd~lfaAt~davfrlw~e~q~wt~erw------------~-------l-gsg-rvqt 285 (445)
T KOG2139|consen 234 ------IPKGLGGFSLLKWSPD-GDVLFAATCDAVFRLWQENQSWTKERW------------I-------L-GSG-RVQT 285 (445)
T ss_pred ------cccCCCceeeEEEcCC-CCEEEEecccceeeeehhcccceecce------------e-------c-cCC-ceee
Confidence 1223447788999999 789999999999999965432111000 0 1 112 5999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCcee--e------eccCCCCccCCCCCCccCCCccccc
Q 004739 254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM--S------FTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
..|+|+|++|+.+.. |.-++|.+.-.++........+....+ + .....+-.-.+..++++-|.|.+++
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 999999998766654 344556655433333222211111110 0 0001112234567788899999988
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=1.5e-11 Score=114.59 Aligned_cols=218 Identities=11% Similarity=0.136 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC--eEEEEEecCCCCCEE-EEEECC------CcEEEEE
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELV-VSGAGD------AEVRLFN 92 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~--V~~~~~s~~~~g~~l-~s~~~d------g~i~vwd 92 (732)
...++|+.|...+++|..+| .+||+.+--+....- ..+.+. +.-+-|-- ++| +.|+.+ ..|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR~----N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFRS----NYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhhh----ceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999887766 899998754332222 122222 22232322 344 334333 4699999
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCCC------------------
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCP------------------ 153 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~------------------ 153 (732)
=.. . .++..+. ...+|.++.+.+ ..|+..- .+.|.||...+. +.+.
T Consensus 82 D~k--~--------~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 82 DLK--E--------RCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ccc--C--------cEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 221 1 3355554 478899999987 3454544 468999988732 2210
Q ss_pred ----CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCC
Q 004739 154 ----PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMS 228 (732)
Q Consensus 154 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~ 228 (732)
..+++.......+.++.......-.....|...|.+++.+-+ |.++||++..|+ |||||..++..+..+.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~R---- 221 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELR---- 221 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeee----
Confidence 111122222233444433322112334568889999999998 899999999987 8999999998876653
Q ss_pred CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.|.....|.+++|+|++.+|+++|..|+|+||.++..
T Consensus 222 ---------------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 222 ---------------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ---------------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 3333446999999999999999999999999999874
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=2.1e-11 Score=116.61 Aligned_cols=71 Identities=24% Similarity=0.479 Sum_probs=66.3
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEE-EecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKM-LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI 674 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~-l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~ 674 (732)
.-|+|++|.+|..-|.+..+|+.++++... |.|-++.|+++..+|.+++|||+|-|..|||+|+++.+.+.
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 468999999999999999999999998877 99999999999999999999999999999999999976653
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=7.4e-12 Score=119.72 Aligned_cols=223 Identities=12% Similarity=0.118 Sum_probs=153.4
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--CcEE
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVR 89 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--g~i~ 89 (732)
.+.+++|..++.. || .|++|-.+|.+.+|..+.+. .+..+ .-...+..+.-++.. ...+++|+.. ..++
T Consensus 102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINELK 176 (412)
T ss_pred ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhccccee
Confidence 3445555555544 33 57778889999999987442 22233 222557777777765 3577779988 8899
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
|||+... .+.....+...-..--.-.-.++++.|.+.. ...||+++.-+.+++||.+.+..+
T Consensus 177 iwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---------------- 239 (412)
T KOG3881|consen 177 IWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---------------- 239 (412)
T ss_pred eeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc----------------
Confidence 9999964 2211111110000000123457888998831 588999999999999999876633
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
+....-...+++++...|. ++++++|..-+.+..||++.++.+... + .+-.+
T Consensus 240 --------V~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~kl~g~~------------~-------kg~tG 291 (412)
T KOG3881|consen 240 --------VAQFDFLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGKLLGCG------------L-------KGITG 291 (412)
T ss_pred --------eeEeccccCcceeeeecCC-CcEEEEecccchhheecccCceeeccc------------c-------CCccC
Confidence 2222223458999999998 899999999999999999988754331 0 33444
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeec
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 289 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 289 (732)
.|+++..+|++++|++++-|..|||+|+++-+.....+..
T Consensus 292 -sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK 331 (412)
T KOG3881|consen 292 -SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK 331 (412)
T ss_pred -CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh
Confidence 5999999999999999999999999999995544444433
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=3.5e-12 Score=119.61 Aligned_cols=282 Identities=13% Similarity=0.178 Sum_probs=174.8
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----eEEEEccCCC------------cCeEEEEEecCCCCCEEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETGHS------------ANVFCTKFVPETSDELVV 80 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~h~------------~~V~~~~~s~~~~g~~l~ 80 (732)
-.+-|.++.|..+|.+||||..+|.|.++.-.... ....+ +.|. ..|+.+.|.++++...++
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 35678999999999999999999999999643222 22222 3443 568999999987667788
Q ss_pred EEECCCcEEEEEcCCCCCCCC-------------------------CCCCCCCceee-ccccCceeEEEEecCCCcEEEE
Q 004739 81 SGAGDAEVRLFNLSRFSGRGL-------------------------DDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWS 134 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~-------------------------~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s 134 (732)
....|.+|++|.+.....+.. ......|.+.+ .+|.-.|++|.++.|. ..+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEee
Confidence 888999999999875432220 00001122222 3688889999999865 55545
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
+.|=.|.+|++.-.... -.+++.+...-.. -...|++..|+|...++++-.++.|+|++-|+
T Consensus 182 -ADdLRINLWnlei~d~s-----------FnIVDIKP~nmEe------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQS-----------FNIVDIKPANMEE------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred -ccceeeeeccccccCCc-----------eeEEEccccCHHH------HHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 45778999998765432 2233333222111 12367899999998899999999999999999
Q ss_pred CCCCCCcccccCC--CCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeee-cCC
Q 004739 215 RMLPPLTSCQKRM--SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGD 291 (732)
Q Consensus 215 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~ 291 (732)
+....-....... +..+.-+.|... - -..|..+.|+++|+++++-.. -+|++||+.....+...+. +..
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffse------i-IsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSE------I-ISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHH------H-hhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 9543211100000 000000111000 1 114889999999998887543 5999999976444433322 211
Q ss_pred CCceeee----ccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004739 292 ASKIMSF----TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 292 ~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l 335 (732)
....++- ...+. -....++.++.+++ +++..+..++
T Consensus 316 lr~kLc~lYEnD~Ifd-----KFec~~sg~~~~v~---TGsy~n~frv 355 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFD-----KFECSWSGNDSYVM---TGSYNNVFRV 355 (433)
T ss_pred HHHHHHHHhhccchhh-----eeEEEEcCCcceEe---cccccceEEE
Confidence 1111110 00010 11245777888888 8998888887
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=6.4e-11 Score=110.56 Aligned_cols=192 Identities=16% Similarity=0.198 Sum_probs=127.2
Q ss_pred CceeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
+.|..+.|..|..+++.+ ..|+.|.+|++...+-...+ ......+.+++|+|++ ..+|.+...+-+|.||.+.+.++
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCc-ceEeeeecceeEEEEEEecccee
Confidence 567788999988776655 67889999999999998888 5667789999999995 25677777899999999987543
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
..++--+..+..++|+|++ ++.+.+++-...-...+...+ ....+.
T Consensus 127 -----------~~~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~----------------------~W~ll~ 172 (447)
T KOG4497|consen 127 -----------YLLPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCK----------------------AWILLK 172 (447)
T ss_pred -----------EEecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhH----------------------HHHHHH
Confidence 2222223456889999955 777766643111111111000 001111
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
...-.....+.+.|+|| |+.|++ ||---...+. .-+.+..+..++|+|
T Consensus 173 ~f~~dT~DltgieWsPd-g~~laV---------wd~~Leykv~----------------------aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 173 EFKLDTIDLTGIEWSPD-GNWLAV---------WDNVLEYKVY----------------------AYERGLGLKFVEWSP 220 (447)
T ss_pred hcCCCcccccCceECCC-CcEEEE---------ecchhhheee----------------------eeeeccceeEEEecc
Confidence 12223336788999999 666654 5432111000 001122488999999
Q ss_pred CCCEEEEEecCCeEEEEECCC
Q 004739 259 NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+++|++|+.|+.+||-+--+
T Consensus 221 ~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 221 CNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred ccceEEeeccchhhhhhceee
Confidence 999999999999999987655
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.41 E-value=8.7e-12 Score=116.11 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=139.9
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~-~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.+..++|..|...|++++|+|..+.|++++.|..-+||.. ..++ ....+ ..+...++++.|+|.+ +.|++|+.-
T Consensus 45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~e--nkFAVgSga 121 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKE--NKFAVGSGA 121 (361)
T ss_pred ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcC--ceEEeccCc
Confidence 4678899999999999999999999999999999999998 4443 33344 4688899999999995 899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
..|.||-++..+.= ....+.-+.+...|+++.|+| ++-+++.|+.|+.+|++..--...-.+. ...
T Consensus 122 r~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekp-------ap~ 187 (361)
T KOG1523|consen 122 RLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKP-------APT 187 (361)
T ss_pred cEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCC-------CCC
Confidence 99999988753210 011234445778899999999 5489999999999999974322110000 000
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
-|+-+...-..+.+.....+.+..+.|+|+ |..|+-.+.|.++.+-|.....
T Consensus 188 pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 188 PWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCCc
Confidence 111111111122223345668999999999 8899999999999999987654
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.7e-11 Score=128.11 Aligned_cols=204 Identities=13% Similarity=0.094 Sum_probs=131.0
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~d 85 (732)
...+.+..|...+...+|+|||+.|+..+. +..|++||+.+++... + ....+...+.+|+|++ +.| ++.+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpDG--~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPDG--RRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCCC--CEEEEEEeCC
Confidence 345566677888999999999999998764 3469999998876543 2 2344556688999994 655 455666
Q ss_pred C--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCc--EEEEECCCCCCCCCCCCCCc
Q 004739 86 A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGT--LRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 86 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~--i~vwd~~~~~~~~~~~~~~~ 160 (732)
| .|.+||+.++. +..+..+........|+|++ +.|+..+ .+|. |.++|+.+++..
T Consensus 270 g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~~-------- 329 (433)
T PRK04922 270 GNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSAE-------- 329 (433)
T ss_pred CCceEEEEECCCCC-----------eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCeE--------
Confidence 5 58889987642 23444455555678999966 5555544 4554 556666554311
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---eEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
.+.. ........+|+|+ ++.|+..+.++ .|.+||+.+++.. .+.
T Consensus 330 ---------------~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt------------- 376 (433)
T PRK04922 330 ---------------RLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT------------- 376 (433)
T ss_pred ---------------Eeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-ECC-------------
Confidence 1110 0112346799999 67777655433 6999999776432 110
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEecC---CeEEEEECCC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 279 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~ 279 (732)
.+. ......|+|||++|+..+.+ +.|+++++..
T Consensus 377 ------~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 377 ------PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ------CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 111 13356899999988877663 4677888754
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=5.5e-11 Score=126.11 Aligned_cols=222 Identities=11% Similarity=0.080 Sum_probs=134.5
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE-ECCC-
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AGDA- 86 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~---~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~dg- 86 (732)
.+.+..+...+...+|||||+.|+..+ .+..|.+|++.+++..... ...+.+....|+|+ |+.|+.. +.+|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD--G~~La~~~~~~g~ 266 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD--GSKLAFALSKTGS 266 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC--CCEEEEEEcCCCC
Confidence 445556677899999999999988654 2457999999888643322 23344567899999 4666644 4455
Q ss_pred -cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-CCcEEEE--ECCCCCCCCCCCCCCccc
Q 004739 87 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQH--DFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 87 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vw--d~~~~~~~~~~~~~~~~~ 162 (732)
.|.+||+.++. ...+..+...+....|+|++ +.|+..+. ++...+| |+.+++..
T Consensus 267 ~~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~---------- 324 (429)
T PRK03629 267 LNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ---------- 324 (429)
T ss_pred cEEEEEECCCCC-----------EEEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE----------
Confidence 48888987532 23333344567889999966 55555444 4444555 55444310
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
.+.. .........|+|+ +++|+..+.+ ..|.+||+.+++.. .+.
T Consensus 325 -------------~lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt--------------- 371 (429)
T PRK03629 325 -------------RITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT--------------- 371 (429)
T ss_pred -------------Eeec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-EeC---------------
Confidence 1110 1113456789999 6677665543 35888998776421 110
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEecCCe---EEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH---VYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
... ......|+|||++|+.++.++. ++++++.. +....+..+.......+|+|
T Consensus 372 ----~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 ----DTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEECccCCCCcCCcccCC
Confidence 001 1235689999999999988764 67777754 33333333333344444444
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.39 E-value=6.8e-12 Score=124.51 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=125.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeEEEEc---cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC----
Q 004739 29 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---- 101 (732)
Q Consensus 29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~---~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~---- 101 (732)
|++--|..|=.-|.|.+.|....+..+.+- .-.+..|+|++|.|.. ...++.+-.+|.+.++|....-+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence 455567777777889988876533222110 1234789999999986 46777778899999998753211100
Q ss_pred --------------CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 102 --------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 102 --------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
......|+..+.--.+.|+.++|+| ++.+||+.+.||.+||+|..+.+..
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl--------------- 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL--------------- 325 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence 0001133444444456899999999 5599999999999999999887632
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
......-+...|++|+|| |++|++|+.|..|.||.+...+.+..- +||.
T Consensus 326 ----------g~mkSYFGGLLCvcWSPD-GKyIvtGGEDDLVtVwSf~erRVVARG--------------------qGHk 374 (636)
T KOG2394|consen 326 ----------GVMKSYFGGLLCVCWSPD-GKYIVTGGEDDLVTVWSFEERRVVARG--------------------QGHK 374 (636)
T ss_pred ----------HHHHhhccceEEEEEcCC-ccEEEecCCcceEEEEEeccceEEEec--------------------cccc
Confidence 111223347899999999 899999999999999999877544321 5565
Q ss_pred cccEEEEEEc
Q 004739 248 SLHLTHVTFS 257 (732)
Q Consensus 248 ~~~i~~l~~s 257 (732)
. +|+.|+|.
T Consensus 375 S-WVs~VaFD 383 (636)
T KOG2394|consen 375 S-WVSVVAFD 383 (636)
T ss_pred c-ceeeEeec
Confidence 5 78888887
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=8.7e-11 Score=125.44 Aligned_cols=206 Identities=11% Similarity=0.064 Sum_probs=134.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~d 85 (732)
...+.+..|...+...+|+|||+.|+..+. +..|.+||+.+++.. .+ ..+.+.+.+.+|+|++ +.| ++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPDG--~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPDG--RKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCCC--CEEEEEEecC
Confidence 345667788899999999999999888763 468999999888654 33 3566778899999994 655 566666
Q ss_pred Cc--EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCc
Q 004739 86 AE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 86 g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+. |.+||+.++. ...+..+........|+|++ +.|+..+ .+| .|.+||+..++..
T Consensus 268 g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~-------- 327 (435)
T PRK05137 268 GNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR-------- 327 (435)
T ss_pred CCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE--------
Confidence 65 6666776532 34444455566778999976 5555544 333 5777787654311
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
.+.. ....+....|+|+ ++.|+....+ ..|.+||+..... ..+.
T Consensus 328 ---------------~lt~---~~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt------------- 374 (435)
T PRK05137 328 ---------------RISF---GGGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-RILT------------- 374 (435)
T ss_pred ---------------Eeec---CCCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce-Eecc-------------
Confidence 1111 1123456789999 6777766543 3588888754321 1110
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEecC------CeEEEEECCCCC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAG 281 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d------g~v~iwd~~~~~ 281 (732)
.+. .+....|+|||+.|+..+.+ ..++++|+....
T Consensus 375 ------~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 375 ------SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ------CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 111 25568999999988776553 257888886643
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=5.5e-11 Score=126.27 Aligned_cols=227 Identities=10% Similarity=0.077 Sum_probs=138.6
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~d 85 (732)
...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... + ....+.+.+..|+|++ +.|+ +.+.+
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG--~~la~~~~~~ 261 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDG--RTLAVALSRD 261 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCC--CEEEEEEccC
Confidence 3445566788899999999999999877643 459999999887643 3 2344566789999994 6665 66778
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccc
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECR 163 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~ 163 (732)
+...||.+....+. ...+..+........|+|++..++++...+|...+|.+. .++.
T Consensus 262 g~~~Iy~~d~~~~~---------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~------------ 320 (427)
T PRK02889 262 GNSQIYTVNADGSG---------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA------------ 320 (427)
T ss_pred CCceEEEEECCCCC---------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce------------
Confidence 88777766532221 344444555567788999764444444445666777653 2220
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---eEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
..+... + .......|+|+ |++|+..+.++ .|.+||+.+++.. .+.
T Consensus 321 -----------~~lt~~-g--~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt---------------- 368 (427)
T PRK02889 321 -----------QRVTFT-G--SYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVT-ALT---------------- 368 (427)
T ss_pred -----------EEEecC-C--CCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeE-Ecc----------------
Confidence 001100 1 12235689999 77887766554 6999999876421 110
Q ss_pred cccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
.+. ......|+|||+.|+.++.++ .+++.++. ++....+..........+|+|
T Consensus 369 ---~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 369 ---DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ---CCC---CccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 111 134579999999988887643 35555663 333333333333444445554
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.3e-10 Score=116.40 Aligned_cols=221 Identities=16% Similarity=0.173 Sum_probs=141.9
Q ss_pred hhhhhccccEeeeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE-ecCCCCCEEEE
Q 004739 4 SLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF-VPETSDELVVS 81 (732)
Q Consensus 4 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~-s~~~~g~~l~s 81 (732)
.+.++.++++.| +|....+.|..+|||+|+ |||.+-..|++||+.+......- .-...|..+.. +.+- ..++-
T Consensus 37 ~~~~rieLiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER--hlDae~V~feiLsDD~--SK~v~ 111 (703)
T KOG2321|consen 37 DYRQRIELIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER--HLDAEVVDFEILSDDY--SKSVF 111 (703)
T ss_pred HHHHHHHHHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee--cccccceeEEEeccch--hhheE
Confidence 455667777777 488889999999999965 56778899999999876543222 22333433333 3331 23333
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
--.|.+|.+..-. +.. ..++ -...-..+.++.....+++.|+ ...|+-.++..+..+
T Consensus 112 L~~DR~IefHak~---G~h---------y~~R-IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL--------- 168 (703)
T KOG2321|consen 112 LQNDRTIEFHAKY---GRH---------YRTR-IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFL--------- 168 (703)
T ss_pred eecCceeeehhhc---Cee---------eeee-cCcCCccccccCCCccEEEeec-CcceEEEEccccccc---------
Confidence 4457777665332 110 0000 1222345566544445554444 457888899888733
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
.........+++|..++. ..+|++|+.+|.|..||.++......+......+ .+.
T Consensus 169 ----------------~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--------s~p 223 (703)
T KOG2321|consen 169 ----------------NPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--------SHP 223 (703)
T ss_pred ----------------cccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccC--------CCc
Confidence 111122347899999998 4599999999999999999887665553222110 011
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+.....|+++.|+.+|-.+++|+.+|.|+|||++.
T Consensus 224 --g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 224 --GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred --cccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 122223599999999999999999999999999998
No 224
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=4.5e-11 Score=112.43 Aligned_cols=244 Identities=18% Similarity=0.189 Sum_probs=175.7
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd-~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.++.+.+.++||.+.|++...-|...-+++.+.|.++|||- .+.++.-..+......+++++++.++. ..|+.|-..
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~n 89 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDN 89 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEec
Confidence 35567788999999999998888878899999999999994 445555444534456789999999985 788888899
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC----------
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA---------- 155 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~---------- 155 (732)
|++.-+.+..-- ++...++....|...+..+.|+- ....+++.+.|..+..--.+.+..+..-
T Consensus 90 gtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 90 GTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred ceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999888765311 12244567778999999999987 4578889999987755555554433110
Q ss_pred ------CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCC
Q 004739 156 ------GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP 229 (732)
Q Consensus 156 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~ 229 (732)
+.+..........+.......+....+|...+++++|.|. ..+|.+|..|..+.+||+.-.+.+.-
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~~------- 234 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTAY------- 234 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCcceee-------
Confidence 0111111112222222333455566789999999999998 67999999999999999975542211
Q ss_pred CCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 230 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
...+|.+ .|..+..-+--+.|.+++.||.|.+|+++..
T Consensus 235 ------------el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 235 ------------ELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ------------eeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 1155655 4777777777888999999999999999874
No 225
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=122.33 Aligned_cols=175 Identities=15% Similarity=0.242 Sum_probs=126.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee
Q 004739 32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL 111 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 111 (732)
..++.++.||.+.|-+ +.++....+ ..|.++|.|-.|+|+ |.-|+++++||.|++|.-... ...+
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsGM-----------LRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSGM-----------LRST 140 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccch-----------HHHH
Confidence 3677788999999987 556666666 799999999999999 588999999999999975521 1234
Q ss_pred eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE
Q 004739 112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 191 (732)
Q Consensus 112 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 191 (732)
+.....+|.|++|.|+..+.+.+.+ +.+.|=-+..... +..-..|.+-|.++.
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-------------------------~i~WkAHDGiiL~~~ 193 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-------------------------IIRWRAHDGLVLSLS 193 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-------------------------eeEEeccCcEEEEee
Confidence 4455678999999997766666554 4555544433321 111234677899999
Q ss_pred ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCe
Q 004739 192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH 271 (732)
Q Consensus 192 ~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~ 271 (732)
|++. .+++++|+.|-..+|||..... +... ..|.- +|++++|.|+ +.++.++. ++
T Consensus 194 W~~~-s~lI~sgGED~kfKvWD~~G~~-Lf~S--------------------~~~ey-~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 194 WSTQ-SNIIASGGEDFRFKIWDAQGAN-LFTS--------------------AAEEY-AITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred cCcc-ccceeecCCceeEEeecccCcc-cccC--------------------Chhcc-ceeeeeeccc-cceeeeee-ee
Confidence 9999 7899999999999999986432 2211 22333 7999999999 44555543 35
Q ss_pred EE
Q 004739 272 VY 273 (732)
Q Consensus 272 v~ 273 (732)
++
T Consensus 249 ~R 250 (737)
T KOG1524|consen 249 AR 250 (737)
T ss_pred ee
Confidence 55
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=8e-10 Score=117.26 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=105.0
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
..|.+||....... .+ ..+...+...+|+|+ |+.|+..+. +..|.+|++.++.... +..+. .
T Consensus 179 ~~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~~~--------l~~~~---~ 243 (429)
T PRK03629 179 YELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAVRQ--------VASFP---R 243 (429)
T ss_pred eeEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCeEE--------ccCCC---C
Confidence 36899997755443 33 356678999999999 577776542 3568999987643211 22233 3
Q ss_pred ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
.+..+.|+|++..++++.+.+| .|.+||+.+++.. .+. .....+....|+|+
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt---~~~~~~~~~~wSPD 297 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVT---DGRSNNTEPTWFPD 297 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------Ecc---CCCCCcCceEECCC
Confidence 3456899997744555555555 4888998776421 111 11224567899999
Q ss_pred CCCEEEEEeC-CCeEEE--EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004739 196 RPHLLLVGGS-DAFARL--YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 269 (732)
Q Consensus 196 ~~~~l~tg~~-dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--- 269 (732)
++.|+..+. ++...| +|+.+++. ..+. ..+ . ......|+|+|++|+..+.+
T Consensus 298 -G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt------------------~~~--~-~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 298 -SQNLAYTSDQAGRPQVYKVNINGGAP-QRIT------------------WEG--S-QNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred -CCEEEEEeCCCCCceEEEEECCCCCe-EEee------------------cCC--C-CccCEEECCCCCEEEEEEccCCC
Confidence 677766554 344444 46654421 1110 011 1 24568899999988876653
Q ss_pred CeEEEEECCC
Q 004739 270 EHVYLMDVNH 279 (732)
Q Consensus 270 g~v~iwd~~~ 279 (732)
..|++||+.+
T Consensus 355 ~~I~~~dl~~ 364 (429)
T PRK03629 355 QHIAKQDLAT 364 (429)
T ss_pred ceEEEEECCC
Confidence 2466666654
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.31 E-value=2.6e-12 Score=125.21 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=151.5
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
...|.++.|-.+.+++|++- ...++||| ..|..++.+ ..| ..|..+.|.|.. -+|++++..|.++--|+.+++
T Consensus 170 ~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHCl-k~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~Gk- 242 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCL-KRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGK- 242 (545)
T ss_pred hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeeh-hhc-Cchhhhcccchh--heeeecccCCceEEEeechhh-
Confidence 46788888888888888875 46899999 678888887 344 568999999995 778888999999999999853
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
.+..+..-.+.+..+.-+|.+ -.+-+|...|+|.+|.....++ +.
T Consensus 243 ---------lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skeP-------------------------Lv 287 (545)
T KOG1272|consen 243 ---------LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEP-------------------------LV 287 (545)
T ss_pred ---------hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcch-------------------------HH
Confidence 256666667888889999965 7888999999999999887763 23
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
....|.++|.++++.++ |++++|.+.|..++|||+++..++.+... ..+...++||.
T Consensus 288 KiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------------p~~a~~ls~Sq 344 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------------PHPASNLSLSQ 344 (545)
T ss_pred HHHhcCCCcceEEECCC-CcEEeecccccceeEeeeccccccceeec----------------------CCCcccccccc
Confidence 33457789999999998 89999999999999999998876554421 11366788887
Q ss_pred CCCEEEEEecCCeEEEEE
Q 004739 259 NGEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd 276 (732)
.| +++.+....|.||.
T Consensus 345 kg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 345 KG--LLALSYGDHVQIWK 360 (545)
T ss_pred cc--ceeeecCCeeeeeh
Confidence 76 55566666999994
No 228
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.3e-11 Score=119.45 Aligned_cols=290 Identities=14% Similarity=0.114 Sum_probs=195.6
Q ss_pred CchhhhhhccccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCC-CCeeE--EEEccCCCcCeEEEEEecCCC
Q 004739 1 MHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYS-SRKLL--HSIETGHSANVFCTKFVPETS 75 (732)
Q Consensus 1 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~-~~~~~--~~~~~~h~~~V~~~~~s~~~~ 75 (732)
|-|+|.+.-.......||...|....|-| +.+-+++++.||.|++=.+. ++.+. ..+ ..|.++|..++.-|..
T Consensus 167 v~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~s- 244 (559)
T KOG1334|consen 167 VVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDS- 244 (559)
T ss_pred EeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCccceeeecCCC-
Confidence 35778877777777889999999999988 34689999999999998754 34333 334 6899999999999987
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 152 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 152 (732)
...|.|++.|+.+.-.|++...... .+..-..+.. ....|+..|.+.+.+++++.|..+++||.+.-...
T Consensus 245 p~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e 317 (559)
T KOG1334|consen 245 PKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE 317 (559)
T ss_pred CCcccccccccceeeeeeccCCccc-------eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence 5889999999999999998643221 1122222333 57889999988889999999999999998875532
Q ss_pred CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCc
Q 004739 153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 232 (732)
......+.-|...+ .......|+++.|+.+++. |.+.-.|-.|+++.-..+. ..... +.. .
T Consensus 318 ~~n~~~~~f~p~hl-------------~~d~~v~ITgl~Ysh~~sE-lLaSYnDe~IYLF~~~~~~-G~~p~---~~s-~ 378 (559)
T KOG1334|consen 318 ENNGVLDKFCPHHL-------------VEDDPVNITGLVYSHDGSE-LLASYNDEDIYLFNKSMGD-GSEPD---PSS-P 378 (559)
T ss_pred cccchhhhcCCccc-------------cccCcccceeEEecCCccc-eeeeecccceEEecccccc-CCCCC---CCc-c
Confidence 11111111111111 1133447999999988555 4555667789999443221 11100 000 0
Q ss_pred cccccccccccCCCcc-ccEEEEEE-cCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCC
Q 004739 233 VNYFCPMHLSEHGRSS-LHLTHVTF-SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 310 (732)
Q Consensus 233 ~~~~~~~~~~~~~~~~-~~i~~l~~-sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (732)
...+.+..+ .||.+ ..|..+-| -|...|+++|+.-|.|.||+-.+++....+.+..+.++.+.-+|.+
T Consensus 379 ~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~-------- 448 (559)
T KOG1334|consen 379 REQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL-------- 448 (559)
T ss_pred hhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC--------
Confidence 011112212 45543 24777765 4788999999999999999999988777777777777766666643
Q ss_pred CCccCCCccccccccccCcchhhHHHHHHHhhhh
Q 004739 311 IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLE 344 (732)
Q Consensus 311 ~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~ 344 (732)
-.+| +.+.|.-++| |...
T Consensus 449 --------PvLA---sSGid~DVKI-----WTP~ 466 (559)
T KOG1334|consen 449 --------PVLA---SSGIDHDVKI-----WTPL 466 (559)
T ss_pred --------chhh---ccCCccceee-----ecCC
Confidence 2344 7888888888 7763
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.30 E-value=1.2e-10 Score=115.73 Aligned_cols=245 Identities=18% Similarity=0.158 Sum_probs=151.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE----EEccCCCcCeEEEEEe-----cCCCCCEEEEEECCCcEEEEE
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH----SIETGHSANVFCTKFV-----PETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~----~~~~~h~~~V~~~~~s-----~~~~g~~l~s~~~dg~i~vwd 92 (732)
++...++-.|.+|+-.-. ..+++|+...+..+. ...... ....|-+|. |. +--++.|-.-|.|.+.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~--g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPK--GLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCC--CcceEEeeccCceEEec
Confidence 334444445666554322 358888877432221 110111 223344442 33 34577777889999988
Q ss_pred cCCCCCCCCCCCCCCCcee--eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC-CCCCCCCcccc--eEEe
Q 004739 93 LSRFSGRGLDDNAITPSAL--YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC-PPAGSSHQECR--NILL 167 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~--~~~~ 167 (732)
.....-. .+.. ..-.+..|+++.|-|.+..+|+.+-.+|.+.++|..-.... ........... .+..
T Consensus 202 p~~~~~s--------klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t 273 (636)
T KOG2394|consen 202 PINFEVS--------KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT 273 (636)
T ss_pred chhhHHH--------HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence 7642100 0010 01124789999999988889999999999999987332111 01111111111 1111
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
........++.........|...+|+|| |++||+.+.||.+||||..+.+.+..+ +. .-
T Consensus 274 ~ksk~~rNPv~~w~~~~g~in~f~FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~m----------kS----------YF 332 (636)
T KOG2394|consen 274 SKSKKTRNPVARWHIGEGSINEFAFSPD-GKYLATVSQDGFLRIFDFDTQELLGVM----------KS----------YF 332 (636)
T ss_pred eeccccCCccceeEeccccccceeEcCC-CceEEEEecCceEEEeeccHHHHHHHH----------Hh----------hc
Confidence 1000000122222233458899999998 899999999999999999987654333 11 11
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
+ ...|++|+|||++|++|+.|..|.||.+...+.+..-.+|...+..++|.|
T Consensus 333 G-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 G-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred c-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 2 389999999999999999999999999999777777777788888888887
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=4.8e-10 Score=106.28 Aligned_cols=227 Identities=16% Similarity=0.236 Sum_probs=144.5
Q ss_pred eccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 16 EGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
.|| .+|+.|.|++||..|++++ .|..|+|||+.++..+... ..-.+.+.-+.|||+ |++|+.+.-|+..++|...
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC--CCEEEEecccceeeeehhc
Confidence 345 7999999999999999987 4688999999999877655 344567899999999 5899999999999999654
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC-CCCcccceEEeeccCCc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-SSHQECRNILLDLRCGA 173 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 173 (732)
..-- ......-.+.|....|+|.+..+|++++.. -++|.+.-........ .........+.++..-.
T Consensus 269 q~wt----------~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 269 QSWT----------KERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred ccce----------ecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 3110 111222345899999999886777777654 4556655443332222 22222333444443211
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCe--------EEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF--------ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~--------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.........+.+.+++|+|. |.+|++.-..+. |.+||.+......-. ++... .+
T Consensus 337 --i~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels------------~cg~i---~g 398 (445)
T KOG2139|consen 337 --ICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS------------YCGMI---GG 398 (445)
T ss_pred --hhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE------------ecccc---cC
Confidence 11111123457889999999 889998765443 667777654322111 11111 11
Q ss_pred CccccEEEEEEcC---CCCEEEEEecCCeEEEEECCC
Q 004739 246 RSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 246 ~~~~~i~~l~~sp---~g~~l~~~~~dg~v~iwd~~~ 279 (732)
. ...-+.|+| +|.+|.++-..|.+.-|++.-
T Consensus 399 e---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 399 E---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred C---CCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 1 123456665 678888888888888887643
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=2.3e-09 Score=110.23 Aligned_cols=174 Identities=12% Similarity=0.176 Sum_probs=111.1
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA 86 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg 86 (732)
+.+.+..+......-..+.|+|||+++.+++.||.|.++|+.+++.+.++.. .....+++++++ |++++++. ..+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~D--G~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPD--GKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T--TTEEEEEEEETT
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCC--CCEEEEEecCCC
Confidence 4567777776555445578999999999999999999999999999999943 334688999999 58877665 689
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
.+.++|.++.+ +++.+.. ....+.+|..+|..+.++++.-+.+.|.+-|....+..
T Consensus 101 ~v~v~D~~tle----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~------- 163 (369)
T PF02239_consen 101 TVSVIDAETLE----------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL------- 163 (369)
T ss_dssp EEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-------
T ss_pred ceeEecccccc----------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-------
Confidence 99999998742 2443332 23457788888855445555455577888887665421
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCCeEEEEECCCCCCC
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg~v~iwd~~~~~~~ 220 (732)
....+. .........|+|+ ++++++ ....+.|-++|..+.+..
T Consensus 164 -----~~~~i~------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 164 -----KVTTIK------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp -----EEEEEE--------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred -----ceeeec------------ccccccccccCcc-cceeeecccccceeEEEeeccceEE
Confidence 000111 1125577899999 565544 556779999998876543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.25 E-value=4.9e-10 Score=104.29 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=99.2
Q ss_pred EEEEEecCCCCCEEEEEEC----------CCcEEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEE
Q 004739 66 FCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWS 134 (732)
Q Consensus 66 ~~~~~s~~~~g~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s 134 (732)
..+.|+|.+ ++|+.-.. -+...+|.++..... +..+.- ..++|.+++|+|++..+++.
T Consensus 9 ~~~~W~~~G--~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---------~~~i~l~~~~~I~~~~WsP~g~~favi 77 (194)
T PF08662_consen 9 AKLHWQPSG--DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---------VESIELKKEGPIHDVAWSPNGNEFAVI 77 (194)
T ss_pred EEEEecccC--CEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---------cceeeccCCCceEEEEECcCCCEEEEE
Confidence 356788874 55443322 134666666543221 233322 34579999999976444333
Q ss_pred -EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEE
Q 004739 135 -ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFAR 210 (732)
Q Consensus 135 -~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~ 210 (732)
|..++.|.+||++... +..+ ....+..+.|+|+ |++|++++.+ |.|.
T Consensus 78 ~g~~~~~v~lyd~~~~~---------------i~~~-------------~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 78 YGSMPAKVTLYDVKGKK---------------IFSF-------------GTQPRNTISWSPD-GRFLVLAGFGNLNGDLE 128 (194)
T ss_pred EccCCcccEEEcCcccE---------------eEee-------------cCCCceEEEECCC-CCEEEEEEccCCCcEEE
Confidence 4456789999996221 1111 1235678999999 7899888754 6799
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec------CCeEEEEECCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH 279 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~------dg~v~iwd~~~ 279 (732)
+||+++.+.+... .|. .++.++|+|+|++|++++. |+.++||++..
T Consensus 129 ~wd~~~~~~i~~~---------------------~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKKKISTF---------------------EHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCEEeecc---------------------ccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 9999977655432 122 3789999999999999975 78899999865
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=7.6e-10 Score=102.98 Aligned_cols=148 Identities=13% Similarity=0.180 Sum_probs=100.9
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCCC-CeeEEEEccCCCcCeEEEEEecCCCCCEEEEE--ECCCcEEE
Q 004739 24 AISWNSKGSLLISGSD----------DTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSG--AGDAEVRL 90 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~----------dg~i~vWd~~~-~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~--~~dg~i~v 90 (732)
.+.|+|+|++|+.-.. -+...||.++. ......+.....++|.+++|+|++ +.|+.. ..+..|.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g--~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG--NEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC--CEEEEEEccCCcccEE
Confidence 5789999987765332 13355555532 233444423455679999999994 665443 45779999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC---CCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
||++. .++..+ +...++.+.|+|++ ++|++++. .|.|.+||+++.+.+
T Consensus 88 yd~~~-----------~~i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i--------------- 138 (194)
T PF08662_consen 88 YDVKG-----------KKIFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKI--------------- 138 (194)
T ss_pred EcCcc-----------cEeEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEe---------------
Confidence 99972 224444 35678899999965 78888764 366999999866532
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC------CCeEEEEECC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR 215 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~------dg~v~iwd~~ 215 (732)
... ....++.++|+|+ |++|++++. |+.++||+..
T Consensus 139 ----------~~~--~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 ----------STF--EHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ----------ecc--ccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence 111 1124689999999 788888764 7889999986
No 234
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=3.2e-09 Score=113.65 Aligned_cols=203 Identities=13% Similarity=0.078 Sum_probs=128.5
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~d 85 (732)
...+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++.... ..+...+.+++|+|++ +.|+ +.+.+
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg--~~l~~~~~~~ 255 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDG--SKLAVSLSKD 255 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCC--CEEEEEECCC
Confidence 3455566677789999999999999987643 4799999998865433 2455667789999994 6554 55544
Q ss_pred C--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCCCCCCCCCCCc
Q 004739 86 A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 86 g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg--~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+ .|.+||+.++. ...+..+........|+|++ +.|+..+ .++ .|.++|+.+++..
T Consensus 256 ~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~~-------- 315 (417)
T TIGR02800 256 GNPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEVR-------- 315 (417)
T ss_pred CCccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCEE--------
Confidence 4 58888887532 23333344445567899966 5554444 344 4777776654310
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---eEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
.+. .+........|+|+ +++|+.++.++ .|.+||+.+... ..+.
T Consensus 316 ---------------~l~---~~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~------------- 362 (417)
T TIGR02800 316 ---------------RLT---FRGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGE-RVLT------------- 362 (417)
T ss_pred ---------------Eee---cCCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCe-EEcc-------------
Confidence 010 01124566789998 67888777765 788999876431 1110
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVN 278 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~ 278 (732)
. . . ......|+|+|++|+..+.++ .+++.+..
T Consensus 363 ------~-~-~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 363 ------D-T-G-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ------C-C-C-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 0 0 0 123458999999888887754 45555543
No 235
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.18 E-value=4.1e-09 Score=104.63 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=116.5
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc----------
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---------- 87 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~---------- 87 (732)
-.-++..++|||.|.+|++.... .|.+|+-..+..+.++ .| ..|..+.|+|. +++|.+=+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence 45689999999999999987664 5999998877766666 24 35899999999 589998765444
Q ss_pred -----EEEEEcCCCCCCCCCCCCCCCceeeccccCc--ee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 88 -----VRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 88 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
+.+||+..+. .+..+..-..+ .. -+.|+-++ .+.|-... ..++|+++ +....
T Consensus 105 ~~~n~~~vwd~~sg~----------iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARvv~-~sl~i~e~-t~n~~------- 164 (561)
T COG5354 105 TSKNNVFVWDIASGM----------IVFSFNGISQPYLGWPVLKFSIDD-KYVARVVG-SSLYIHEI-TDNIE------- 164 (561)
T ss_pred cccCceeEEeccCce----------eEeeccccCCcccccceeeeeecc-hhhhhhcc-CeEEEEec-CCccc-------
Confidence 8999998642 14444443333 33 56777744 66654433 46999997 43311
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCC-CCCEEEE-----EeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 233 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~t-----g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 233 (732)
......-....|....|+|. ++..|+. .+..+++++|.+.....+.+-
T Consensus 165 ----------------~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk---------- 218 (561)
T COG5354 165 ----------------EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK---------- 218 (561)
T ss_pred ----------------cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee----------
Confidence 00000011235667777776 2233332 456788999998755433221
Q ss_pred ccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004739 234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 266 (732)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~ 266 (732)
.+ . .- .=..+.|.+.|++|++-
T Consensus 219 -~l-----f--k~---~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 219 -NL-----F--KV---SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred -ee-----E--ee---cccEEEEecCCceEEEE
Confidence 00 0 00 12357888999887654
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.7e-09 Score=112.95 Aligned_cols=200 Identities=14% Similarity=0.157 Sum_probs=127.1
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
..|.+||.... ....+ ..|...+.+.+|+|+ |+.|+..+. +..|.+||+.++. ...+..+..
T Consensus 182 ~~l~~~d~dg~-~~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG 246 (435)
T ss_pred eEEEEECCCCC-CcEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence 47889997544 44445 577889999999999 577777653 4679999998643 233444566
Q ss_pred ceeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
.+...+|+|++..++++.+.++. |.+||+.+++.. .+ ..+........|+|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~L---t~~~~~~~~~~~spD 300 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RL---TDSPAIDTSPSYSPD 300 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------Ec---cCCCCccCceeEcCC
Confidence 77789999977556667776665 677787765421 11 112223456799999
Q ss_pred CCCEEEEEeC-CC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004739 196 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 269 (732)
Q Consensus 196 ~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--- 269 (732)
++.|+..+. +| .|++||+..++. ..+. . ... .+....|+|+|++|+....+
T Consensus 301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt-------------------~-~~~-~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 301 -GSQIVFESDRSGSPQLYVMNADGSNP-RRIS-------------------F-GGG-RYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred -CCEEEEEECCCCCCeEEEEECCCCCe-EEee-------------------c-CCC-cccCeEECCCCCEEEEEEcCCCc
Confidence 677766553 33 588888765432 1110 0 111 25568899999999887653
Q ss_pred CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 270 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 270 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
..|.+||+.++.. ..+. .+ .......|+|||+.++
T Consensus 358 ~~i~~~d~~~~~~-~~lt---------------~~--~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 358 FSIGVMKPDGSGE-RILT---------------SG--FLVEGPTWAPNGRVIM 392 (435)
T ss_pred eEEEEEECCCCce-Eecc---------------CC--CCCCCCeECCCCCEEE
Confidence 3688888765321 1110 00 1244567899999887
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=7e-09 Score=111.09 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=126.0
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECCC
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA 86 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~dg 86 (732)
..+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... + ....+.+....|+|+ |+.|+ +...++
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g 265 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDG 265 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCC
Confidence 345566678889999999999999876643 368999998886543 3 233445567899999 46665 555555
Q ss_pred --cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCccc
Q 004739 87 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 87 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
.|.+||+.++. ...+..+........|+|++..++++...+| .|.++|+.+++..
T Consensus 266 ~~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---------- 324 (430)
T PRK00178 266 NPEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---------- 324 (430)
T ss_pred CceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE----------
Confidence 57778887642 2333444455667889997644554544444 4666777655411
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-C--eEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-A--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
.+.. .+ .......|+|+ ++.|+....+ + .|.+||+.+++. ..+.
T Consensus 325 -------------~lt~-~~--~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt--------------- 371 (430)
T PRK00178 325 -------------RVTF-VG--NYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSV-RILT--------------- 371 (430)
T ss_pred -------------Eeec-CC--CCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCE-EEcc---------------
Confidence 0000 00 12234679999 6677665543 3 588889887542 1110
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEecC---CeEEEEECCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 279 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~ 279 (732)
.... .....|+|+|+.|+..+.+ ..|+++++..
T Consensus 372 ----~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 372 ----DTSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ----CCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 0011 1235899999998877664 3567777754
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=6.8e-09 Score=110.63 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=118.4
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEECCCc-
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE- 87 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~dg~- 87 (732)
+.+..+...+....|+|||++|+..+.+ ..|.+||+.+++... + ....+......|+|++ +.|+ +.+.++.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPDG--~~La~~~~~~g~~ 286 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPDG--KKLALVLSKDGQP 286 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCCC--CEEEEEEeCCCCe
Confidence 3444556678899999999998876542 358889998876533 2 2223344578999994 6554 5566776
Q ss_pred -EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccce
Q 004739 88 -VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 88 -i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
|.++|+.++. ...+..+........|+|++..++++...++. |.++|+.+++..
T Consensus 287 ~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~------------ 343 (448)
T PRK04792 287 EIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS------------ 343 (448)
T ss_pred EEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE------------
Confidence 6666776532 23344445556778999976444455444444 555666554411
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CC--eEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
.+.. .+. .....+|+|+ +++|+..+. ++ .|.++|+.+++.. .+.
T Consensus 344 -----------~Lt~-~g~--~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt----------------- 390 (448)
T PRK04792 344 -----------RLTF-EGE--QNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-VLT----------------- 390 (448)
T ss_pred -----------EEec-CCC--CCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeE-Ecc-----------------
Confidence 1110 011 1234689999 566665544 44 4555677665321 110
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecC-C--eEEEEECCC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH 279 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g--~v~iwd~~~ 279 (732)
.... .....|+|+|+.|+..+.+ | .+++++...
T Consensus 391 --~~~~---d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 391 --STRL---DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred --CCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 0000 1134799999988776653 3 477777643
No 239
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=8.7e-09 Score=107.14 Aligned_cols=239 Identities=14% Similarity=0.130 Sum_probs=147.7
Q ss_pred hhccccEeeeccCCceeEEEEcCC------C------CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSK------G------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~d------g------~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~ 74 (732)
++.+.++.+.-|...|+.+.|.|- + -+||++...|.|.|||...+..+..+ ..|..+|..++|.+..
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeecc
Confidence 456788889999999999999872 1 26778888899999999999888888 7888999999998854
Q ss_pred CC--CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004739 75 SD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC 152 (732)
Q Consensus 75 ~g--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 152 (732)
+. ..|+.-....+|.+|+..++.. +.....-.....++.+.|.+.+.+..-+..|.+.+-+.-.....
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k----------~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEK----------FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEP 191 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCce----------eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCC
Confidence 22 3566666778999999987532 33443334566779999988777766666788777765433321
Q ss_pred -CCC-----CCCCcccceEEeeccCCccccccCCCCCccc--eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccc
Q 004739 153 -PPA-----GSSHQECRNILLDLRCGAKRSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 224 (732)
Q Consensus 153 -~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~ 224 (732)
... ...+.+....-....++.. .-..+...... ...++|+|.-.+.++ ......+.|+|++-...+....
T Consensus 192 ~~pgk~~qI~sd~Sdl~~lere~at~ns-~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~~l~vvp 269 (1062)
T KOG1912|consen 192 DVPGKEFQITSDHSDLAHLERETATGNS-TTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYECCLAVVP 269 (1062)
T ss_pred CCCceeEEEecCccchhhhhhhhhcccc-ccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhceeEEEE
Confidence 000 0000000000000000000 00001111111 123567887444443 4456779999998665443321
Q ss_pred cCCCCCCccccccccccccCCCccccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004739 225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~ 279 (732)
. ..+ .+.-+.+-|++ ..|++...||.+.+|--+.
T Consensus 270 i--------------------er~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 270 I--------------------ERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred e--------------------ccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 1 111 13345666655 5799999999999997665
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=2.9e-08 Score=93.04 Aligned_cols=163 Identities=20% Similarity=0.329 Sum_probs=116.5
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeeEEEEccCC-CcCeEEEEEecCCCCCEEEE-EECCCcEEEEEcC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCTKFVPETSDELVVS-GAGDAEVRLFNLS 94 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~-~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s-~~~dg~i~vwd~~ 94 (732)
...+|.++.+.++ +|++.- .+.|+||... +.+.++.+.... ... -++..|..+..+|+- |-.-|.|+|-|+.
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG--lC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG--LCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCc--eEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 4678888888765 566654 4789999987 556666663211 222 344555542233332 3356899999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.... .+.....+|...|.+++.+.+| .++||+|..|+ |||||..+++.+ ..++.|.
T Consensus 168 ~~~~--------~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l--------------~E~RRG~ 224 (346)
T KOG2111|consen 168 STKP--------NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLL--------------QELRRGV 224 (346)
T ss_pred hcCc--------CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEe--------------eeeecCC
Confidence 5321 1246788999999999999955 99999999998 789999999843 2222222
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
....|++|+|+|+ ..+|++++..|+|+||.++...
T Consensus 225 ---------d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 ---------DRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ---------chheEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence 2348999999999 7899999999999999998644
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.5e-09 Score=115.10 Aligned_cols=195 Identities=10% Similarity=0.106 Sum_probs=149.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEE---EEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC---TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~---~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
..+..+..+++.+..++.+.+||...+.....+.........+ +-++++. -++++|+.-+.|.+|++.. ..
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~-dn--- 166 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHE-DN--- 166 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccc-cC---
Confidence 3444456778888889999999999887777662222211222 2344552 5889999999999999882 21
Q ss_pred CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
. -..+.+|.+.|.++.++-+ +++++++|+|.++|+|++.+.+... ...-
T Consensus 167 -----~-p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~f 215 (967)
T KOG0974|consen 167 -----K-PIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLG------------------------CTGF 215 (967)
T ss_pred -----C-cceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccC------------------------cccc
Confidence 1 1268899999999999984 4999999999999999999987431 1234
Q ss_pred CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004739 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 261 (732)
Q Consensus 182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 261 (732)
+|...+..+.|.|. .+++++.|-+.++|+.... .+..+ .+|....|..++..++..
T Consensus 216 gHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~-~l~~y--------------------~~h~g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 216 GHSARVWACCFLPN---RIITVGEDCTCRVWGVNGT-QLEVY--------------------DEHSGKGIWKIAVPIGVI 271 (967)
T ss_pred cccceeEEEEeccc---eeEEeccceEEEEEecccc-eehhh--------------------hhhhhcceeEEEEcCCce
Confidence 67889999999986 8999999999999976533 22222 556666799999999999
Q ss_pred EEEEEecCCeEEEEECCCC
Q 004739 262 EVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~~ 280 (732)
.+++++.|+.+++|++..-
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEeeccCcchhhhhhhcc
Confidence 9999999999999998873
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=4.3e-09 Score=97.32 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=145.9
Q ss_pred cCCceeEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCC---C---cCeEEEEEecCCCCCEEEEEECCCc
Q 004739 18 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETGH---S---ANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 18 h~~~V~~l~~s~---dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h---~---~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.+..+..+.|+. +|. .|+-+-.+|.|.++....-.....+ .+- . ....++.|++. +..++++..+|.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~ 144 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDISTS--GTKIFVSDSRGS 144 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeecc--CceEEEEcCCCc
Confidence 356677788873 555 5666777899999976654444333 221 1 12457788887 477999888999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
+.+-+...... +.++.++.|...+.-..|+..+++++.+|+.|+.+..||++.++.. +
T Consensus 145 ~~~v~~t~~~l--------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-------------i- 202 (339)
T KOG0280|consen 145 ISGVYETEMVL--------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-------------I- 202 (339)
T ss_pred EEEEecceeee--------eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-------------e-
Confidence 88555443221 3356889999999999999988899999999999999999954421 1
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
......|...|.+|.-+|..+.++++|+.|-.|++||.|+ ++++.. +.
T Consensus 203 ---------~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----------------------~~ 251 (339)
T KOG0280|consen 203 ---------WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----------------------AK 251 (339)
T ss_pred ---------eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------------------Cc
Confidence 1223457778999999988789999999999999999995 444332 11
Q ss_pred ccccEEEEEEcCCCC-EEEEEecCCeEEEEECCCCC
Q 004739 247 SSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~~~ 281 (732)
.++.|+.+.++|.-. .|++++.-+-.+|-+.+...
T Consensus 252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred cccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 223599999999543 34444555556777766643
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=3.8e-09 Score=112.70 Aligned_cols=177 Identities=10% Similarity=0.079 Sum_probs=112.6
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
..|.+||.... ....+ ..+...+.+.+|+|+ |+.|+..+.+ ..|.+||+.++.. ..+.....
T Consensus 184 ~~l~i~D~~g~-~~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~-----------~~l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGY-NPQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR-----------ELVASFRG 248 (433)
T ss_pred EEEEEECCCCC-CceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE-----------EEeccCCC
Confidence 46899997544 44445 467778999999999 5788877643 4699999976432 22223334
Q ss_pred ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
.....+|+|++..++++.+.+| .|++||+.+++.. .+. .+.......+|+|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD 302 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD 302 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence 4557899997755656666666 4889998776521 111 11123456789999
Q ss_pred CCCEEEEEe-CCCe--EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--
Q 004739 196 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 270 (732)
Q Consensus 196 ~~~~l~tg~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg-- 270 (732)
++.|+..+ .+|. |+++|+.+++.. .+. + .+. .....+|+|+|++|+..+.++
T Consensus 303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt-----------~-------~g~---~~~~~~~SpDG~~Ia~~~~~~~~ 359 (433)
T PRK04922 303 -GKSIYFTSDRGGRPQIYRVAASGGSAE-RLT-----------F-------QGN---YNARASVSPDGKKIAMVHGSGGQ 359 (433)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCeE-Eee-----------c-------CCC---CccCEEECCCCCEEEEEECCCCc
Confidence 66666655 3444 666676654311 110 0 111 234689999999998876543
Q ss_pred -eEEEEECCCCC
Q 004739 271 -HVYLMDVNHAG 281 (732)
Q Consensus 271 -~v~iwd~~~~~ 281 (732)
.|++||+.+++
T Consensus 360 ~~I~v~d~~~g~ 371 (433)
T PRK04922 360 YRIAVMDLSTGS 371 (433)
T ss_pred eeEEEEECCCCC
Confidence 69999998754
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=2.4e-09 Score=98.98 Aligned_cols=207 Identities=14% Similarity=0.027 Sum_probs=141.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
..++.|++-+..++++..+|.+.+-+...+.... .. +.|+..+.-.+|+... .+++++|+.|+.+..||++.+..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCcc-
Confidence 3467888989999999999999866655443333 55 7999999999999876 48999999999999999995431
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. .-+..+-|...|.+|.-+|..+.+|++|+.|..|++||.+....+..
T Consensus 201 ~-------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~------------------------- 248 (339)
T KOG0280|consen 201 F-------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF------------------------- 248 (339)
T ss_pred e-------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------------------------
Confidence 1 12235668999999999998889999999999999999996543211
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
.....+.|..+.++|.....++.++..+-.+|-+.......... .......|.. -...-.|...
T Consensus 249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~---------------~~~s~~~hdS-l~YG~DWd~~ 312 (339)
T KOG0280|consen 249 KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI---------------VLPSDKIHDS-LCYGGDWDSK 312 (339)
T ss_pred cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe---------------eeeccccccc-eeeccccccc
Confidence 11122578888888875445666666666788877654321000 0000023333 2555566444
Q ss_pred CCEEEEEec-CCeEE-EEECCC
Q 004739 260 GEEVLLSYS-GEHVY-LMDVNH 279 (732)
Q Consensus 260 g~~l~~~~~-dg~v~-iwd~~~ 279 (732)
...|++++. |..++ +|-.-+
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cceeeeeeccccceeeeeeecc
Confidence 456777654 66644 775544
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=5.3e-09 Score=111.18 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=120.7
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
..|.+||.. +.....+ ..+...+.+.+|+|+ |+.|+..+.+ ..|.+||+.++.. ..+.....
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~-----------~~l~~~~g 240 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR-----------RVVANFKG 240 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE-----------EEeecCCC
Confidence 457777764 4444445 467788999999999 5777776643 3599999986432 22332344
Q ss_pred ceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
.+...+|+|++..++++.+.+|...+|.+. .+.. ..+. .+........|+|+
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----------------------~~lt---~~~~~~~~~~wSpD 294 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-----------------------RRLT---QSSGIDTEPFFSPD 294 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-----------------------EECC---CCCCCCcCeEEcCC
Confidence 566889999775555677888877776553 2221 0111 11223456789999
Q ss_pred CCCEEEEEe-CCCeEEEEECC--CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--
Q 004739 196 RPHLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 270 (732)
Q Consensus 196 ~~~~l~tg~-~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg-- 270 (732)
++.|+..+ .++...||.+. +++. ..+ .+ .+. .....+|+|+|++|+..+.++
T Consensus 295 -G~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l-----------t~-------~g~---~~~~~~~SpDG~~Ia~~s~~~g~ 351 (427)
T PRK02889 295 -GRSIYFTSDRGGAPQIYRMPASGGAA-QRV-----------TF-------TGS---YNTSPRISPDGKLLAYISRVGGA 351 (427)
T ss_pred -CCEEEEEecCCCCcEEEEEECCCCce-EEE-----------ec-------CCC---CcCceEECCCCCEEEEEEccCCc
Confidence 66666544 35666666553 3221 110 00 111 134578999999998877654
Q ss_pred -eEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 271 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 271 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
.|++||+.+++..... . . .......|+|||+.++
T Consensus 352 ~~I~v~d~~~g~~~~lt-~-~----------------~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 352 FKLYVQDLATGQVTALT-D-T----------------TRDESPSFAPNGRYIL 386 (427)
T ss_pred EEEEEEECCCCCeEEcc-C-C----------------CCccCceECCCCCEEE
Confidence 6999999875422111 0 0 0123457899999887
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=5.7e-10 Score=125.60 Aligned_cols=195 Identities=14% Similarity=0.211 Sum_probs=158.5
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
++-|-..|.++.=+|...+.+||+.||.|++|....++.+..+...-...|+.+.|+.+ |+.+..+..||.+.+|-..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccC
Confidence 34456788889889988999999999999999999999988887666689999999998 5888889999999999887
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe---CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
. ++....++|......+.|-. ..+++++ .++.+.+||..-....
T Consensus 2282 p-----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~------------------- 2328 (2439)
T KOG1064|consen 2282 P-----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN------------------- 2328 (2439)
T ss_pred C-----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc-------------------
Confidence 2 45788899999999999975 5677764 5678999997554321
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
..+ +..|...++++++.|. ..+|++|+.+|.|++||++..+.++.++ .
T Consensus 2329 ---s~v--~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~ 2376 (2439)
T KOG1064|consen 2329 ---SLV--HTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A 2376 (2439)
T ss_pred ---cee--eeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h
Confidence 011 1457778999999998 7899999999999999999876554431 1
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
++ ...++++|+..|.++||++....
T Consensus 2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ----hh-hhheeeccCcccceEEEEccccc
Confidence 34 55689999999999999998853
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.4e-09 Score=106.57 Aligned_cols=200 Identities=15% Similarity=0.220 Sum_probs=142.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 24 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 24 ~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
.|+++. .-.+++.| ....|+-.+++.|+.+.-+ ....+.++++..++-. .+|++|+.+|.|..||.+..+....
T Consensus 138 Dm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~- 212 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGT- 212 (703)
T ss_pred cccccCCCccEEEee-cCcceEEEEcccccccccc-ccccccceeeeecCcc--ceEEecccCceEEEecchhhhhhee-
Confidence 444543 33344444 4456888999999998888 5666899999999984 7899999999999999997543211
Q ss_pred CCCCCCceeecccc-----CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 103 DNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 103 ~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.........|. ..|+++.|.-+ +-.++.|..+|.+.|||+++.+++ +
T Consensus 213 ---l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl------------------------~ 264 (703)
T KOG2321|consen 213 ---LDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPL------------------------L 264 (703)
T ss_pred ---eecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCce------------------------e
Confidence 01111122233 34999999874 588999999999999999998754 1
Q ss_pred cCCCCCccceEEEEecCCCC-CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 178 ADPPKQTLSLKSCDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
..-.+...+|..+.|.+.+. ..+++ .....++|||-.+++++..+. ....++.+++
T Consensus 265 ~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~ 321 (703)
T KOG2321|consen 265 VKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCF 321 (703)
T ss_pred ecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecc----------------------ccCCcCceee
Confidence 12223445788888876533 34444 445789999999998765441 1224889999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
-|++-+++++..++.+..|=+..
T Consensus 322 ~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 322 VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ecCCceEEEecCCCcceeEEccc
Confidence 99999999999988877776555
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.06 E-value=2.9e-07 Score=95.03 Aligned_cols=208 Identities=14% Similarity=0.127 Sum_probs=119.9
Q ss_pred EEEEeCC----CcEEEEeC--CCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC----CCcEEEEEcCCCCCCCCCC
Q 004739 34 LISGSDD----THINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----DAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 34 lasg~~d----g~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~----dg~i~vwd~~~~~~~~~~~ 103 (732)
++.|+.. +.|.+|++ .+++....-...-......++++|+ +++|++... ++.|..|++....+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~L--- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGTL--- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTEE---
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCccee---
Confidence 4556655 68999987 4454332211123455678999998 488888876 5689999887532221
Q ss_pred CCCCCceeeccccCceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004739 104 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 182 (732)
Q Consensus 104 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (732)
..+............++++|++ ++|+++ -.+|.|.++++.....+ .....++... +. .......
T Consensus 77 ---~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l--------~~~~~~~~~~-g~--g~~~~rq 141 (345)
T PF10282_consen 77 ---TLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSL--------GEVVQTVRHE-GS--GPNPDRQ 141 (345)
T ss_dssp ---EEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEE--------EEEEEEEESE-EE--ESSTTTT
T ss_pred ---EEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCccc--------ceeeeecccC-CC--CCccccc
Confidence 2233333234566789999966 555555 46899999999874311 0000011000 00 0000011
Q ss_pred CccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCCCC-CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004739 183 QTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g 260 (732)
......++.|+|+ ++++++.. ....|++|++..... +... ..+ ....+.....++|+|++
T Consensus 142 ~~~h~H~v~~~pd-g~~v~v~dlG~D~v~~~~~~~~~~~l~~~----------~~~-------~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 142 EGPHPHQVVFSPD-GRFVYVPDLGADRVYVYDIDDDTGKLTPV----------DSI-------KVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp SSTCEEEEEE-TT-SSEEEEEETTTTEEEEEEE-TTS-TEEEE----------EEE-------ECSTTSSEEEEEE-TTS
T ss_pred ccccceeEEECCC-CCEEEEEecCCCEEEEEEEeCCCceEEEe----------ecc-------ccccCCCCcEEEEcCCc
Confidence 2335688999999 56666553 456899999976541 1110 000 01112247889999999
Q ss_pred CEEEEEec-CCeEEEEECCC
Q 004739 261 EEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 261 ~~l~~~~~-dg~v~iwd~~~ 279 (732)
+++++... ++.|.+|++..
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp SEEEEEETTTTEEEEEEEET
T ss_pred CEEEEecCCCCcEEEEeecc
Confidence 99988876 78999998874
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=8.4e-08 Score=101.48 Aligned_cols=230 Identities=13% Similarity=0.086 Sum_probs=127.8
Q ss_pred EeeeccCCceeEEEEcCCCCEEE---EEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CC
Q 004739 13 RELEGHQGCVNAISWNSKGSLLI---SGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA 86 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~la---sg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg 86 (732)
+.|......+..-+|+|||+.++ +...+ ..|.+.++.+++..... ...+.....+|+|+ |+.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPD--G~~Laf~s~~~g 253 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPR--KKLLAFISDRYG 253 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCC--CCEEEEEECCCC
Confidence 34544556667789999997522 44333 35777788877644332 34455567899999 467665542 33
Q ss_pred ----cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEEC--CCCCCCCCCCCCCc
Q 004739 87 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF--RQGSSCPPAGSSHQ 160 (732)
Q Consensus 87 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~--~~~~~~~~~~~~~~ 160 (732)
.+.+|++..+... .+......+........|+|++..++++...+|...+|.+ ......
T Consensus 254 ~~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-------- 318 (428)
T PRK01029 254 NPDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-------- 318 (428)
T ss_pred CcceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc--------
Confidence 2444666542111 1122222223345678999976444444445666555543 221100
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
...+. .....+....|+|+ |+.|+..+.+ ..|.+||+.+++... +.
T Consensus 319 -------------~~~lt---~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt------------- 367 (428)
T PRK01029 319 -------------PRLLT---KKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQ-LT------------- 367 (428)
T ss_pred -------------eEEec---cCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEE-cc-------------
Confidence 00011 11124567889999 6777665443 469999998765321 10
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCCcceeeecCCCCceeeeccC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT 301 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (732)
.+ ...+....|+|||+.|+..+. ...|+++|+.+++.... ..........+|+|.
T Consensus 368 ------~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 368 ------TS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAF 425 (428)
T ss_pred ------CC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCC
Confidence 11 112566899999998876543 35788999987553332 222233344555543
No 250
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=8.5e-09 Score=95.86 Aligned_cols=240 Identities=13% Similarity=0.194 Sum_probs=149.9
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eE----EEEccCCC------------cCeEEEEEecCCCCCEEEE
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LL----HSIETGHS------------ANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-~~----~~~~~~h~------------~~V~~~~~s~~~~g~~l~s 81 (732)
.+-|+++.|...|.+|++|...|.|.++.-.... |. ..| ++|. ..|..+.|..+..-..++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 5679999999999999999999999999754322 21 223 3443 5588899987653456666
Q ss_pred EECCCcEEEEEcCCCCCCCCCCC--------------------------C------CCCceee-ccccCceeEEEEecCC
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDN--------------------------A------ITPSALY-QCHTRRVKKLAVEVGN 128 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~--------------------------~------~~~~~~~-~~h~~~v~~l~~~p~~ 128 (732)
.+.|.+|++|.+.....+....+ . ..+.+.. ..|.-.|+++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999999875422111000 0 0111122 5688889999999855
Q ss_pred CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe
Q 004739 129 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 208 (732)
Q Consensus 129 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~ 208 (732)
..+++ +.|-.|.+|++.-.... -.+++.+...-.. -...|++..|+|...+.+.-.++.|.
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~s-----------FnIVDiKP~nmee------LteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDGS-----------FNIVDIKPHNMEE------LTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred -heeee-ccceeeeeccccccCCc-----------eEEEeccCccHHH------HHHHHhhcccCHhHcceEEEecCCCc
Confidence 55544 56778999998765422 2233333221111 12367889999988888888899999
Q ss_pred EEEEECCCCCCCcccccCCCCCCccccccccccc-cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcce
Q 004739 209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS-EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 285 (732)
Q Consensus 209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~ 285 (732)
|++-|++....-...... ...+..+.... -.+- -..|..+.|+++|+++++-.. -+|.|||++..+.+..
T Consensus 246 Ikl~DlRq~alcdn~~kl-----fe~~~D~v~~~ff~ei-vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 246 IKLNDLRQSALCDNSKKL-----FELTIDGVDVDFFEEI-VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEehhhhhhhhccCchhh-----hhhccCcccchhHHHH-hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 999999854311000000 00000000000 0011 124889999999998876544 5999999998765443
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=3.1e-09 Score=100.18 Aligned_cols=241 Identities=17% Similarity=0.240 Sum_probs=150.2
Q ss_pred CCceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe-----------------------------------eEEEEccCC
Q 004739 19 QGCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-----------------------------------LLHSIETGH 61 (732)
Q Consensus 19 ~~~V~~l~~s~dg~--~lasg~~dg~i~vWd~~~~~-----------------------------------~~~~~~~~h 61 (732)
...|+.+.|.++++ .++....|.+|++|.+.... +.+.+...|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35789999998764 55556689999999875311 122223478
Q ss_pred CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004739 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 141 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 141 (732)
+--|++++++.+. ..++++ .|=+|.+|+++...+ .......+| ..+...+..|++..|+|...+.|+-.+..|+|
T Consensus 164 tyhiNSIS~NsD~--Et~lSA-DdLRINLWnlei~d~-sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 164 TYHINSISVNSDK--ETFLSA-DDLRINLWNLEIIDQ-SFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred eeEeeeeeecCcc--ceEeec-cceeeeeccccccCC-ceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 8889999999984 677765 588899999986432 111111111 22333456799999999888899988999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCC
Q 004739 142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPL 220 (732)
Q Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~ 220 (732)
++-|++....+-..... +-....+. ...+...-...|..+.|++. |+++++-.. -+|++||+.. .+++
T Consensus 239 rLcDmR~~aLCd~hsKl-------fEepedp~--~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKL-------FEEPEDPS--SRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred EEeechhhhhhcchhhh-------hccccCCc--chhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcc
Confidence 99999976654111000 00000000 01111122347889999998 788887643 6899999954 4444
Q ss_pred cccccCCCCCCcccccccccccc--CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSE--HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
.+.+... +....+.. ....-..-..++|+-++.++++|+..+.+++|++..+...
T Consensus 308 ~t~~vh~--------~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 308 ETYPVHE--------YLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred eEEeehH--------hHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 4332111 00000000 0011011345789999999999999999999997765543
No 252
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=1.1e-09 Score=72.43 Aligned_cols=39 Identities=23% Similarity=0.570 Sum_probs=37.7
Q ss_pred ccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004739 628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 666 (732)
Q Consensus 628 g~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~ 666 (732)
|+++.+|.+|.+.|++|+|+|++.+|+|+|.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999999997
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.99 E-value=5.6e-08 Score=104.03 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=111.7
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
..|.++|..... ...+ ..+...+...+|+|+ |++|+.+..+ ..|++||+.++. ...+..+..
T Consensus 170 ~~l~~~d~~g~~-~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~ 234 (417)
T TIGR02800 170 YELQVADYDGAN-PQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG 234 (417)
T ss_pred ceEEEEcCCCCC-CEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence 358888875443 3444 356667899999999 5888777643 479999998642 222333455
Q ss_pred ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
.+.+++|+|++..++++.+.++ .|.+||+.++... .+. .+........|+|+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~---~~~~~~~~~~~s~d 288 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLT---NGPGIDTEPSWSPD 288 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECC---CCCCCCCCEEECCC
Confidence 6677899997755555665554 4888888765421 010 11112345679998
Q ss_pred CCCEEEEEeC-CC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--
Q 004739 196 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE-- 270 (732)
Q Consensus 196 ~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg-- 270 (732)
++.|+..+. ++ .|+++|+.+.+.. .+ ..+.. .+....|+|+|++|+.++.++
T Consensus 289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~-~l--------------------~~~~~-~~~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 289 -GKSIAFTSDRGGSPQIYMMDADGGEVR-RL--------------------TFRGG-YNASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCEE-Ee--------------------ecCCC-CccCeEECCCCCEEEEEEccCCc
Confidence 666665543 33 5777887654311 11 00111 356789999999999888875
Q ss_pred -eEEEEECCCC
Q 004739 271 -HVYLMDVNHA 280 (732)
Q Consensus 271 -~v~iwd~~~~ 280 (732)
.|.+||+.++
T Consensus 346 ~~i~~~d~~~~ 356 (417)
T TIGR02800 346 FNIAVMDLDGG 356 (417)
T ss_pred eEEEEEeCCCC
Confidence 7889998874
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.6e-07 Score=92.93 Aligned_cols=112 Identities=11% Similarity=0.163 Sum_probs=79.6
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-----------CCcEEEE
Q 004739 23 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-----------DAEVRLF 91 (732)
Q Consensus 23 ~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-----------dg~i~vw 91 (732)
+.+.|||-|.||+|--.-| |.+|--.+...+++| .|.+ |.-+.|||.. +||+|-+. ...++||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~-Vq~idfSP~E--kYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPG-VQFIDFSPNE--KYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCC-ceeeecCCcc--ceEEEecCCccccCcccCCCceEEEE
Confidence 5689999999999987755 899987777788888 5664 7899999995 89998754 1469999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
|+.++..... ...+++....-.-+.|+.++ +++|.-.. ..|.||+..+.
T Consensus 288 DI~tG~lkrs-------F~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf 336 (698)
T KOG2314|consen 288 DIATGLLKRS-------FPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSF 336 (698)
T ss_pred Eccccchhcc-------eeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCce
Confidence 9998643211 11112212222335788854 88877666 47999987664
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.3e-07 Score=95.48 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=77.1
Q ss_pred ceeEEEEcCCCCEEEEEe-----CC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 21 CVNAISWNSKGSLLISGS-----DD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~-----~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
.++++.|+|-|.+|.|-- .+ ..+++|+++++.....+....... .+..|+++ ..|+.=-..+.+.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~d---Esl~arlv~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSID---ESLAARLVSNEVQF 150 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccc---hhhhhhhhcceEEE
Confidence 778899999998887641 22 357799999976666664445554 58999998 45555555678999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEE-----EeCCCcEEEEECC
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS-----ASEDGTLRQHDFR 147 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s-----~s~dg~i~vwd~~ 147 (732)
|++..... ..-+-|...|+.+.++|. ....+|+ .|.-..|++|...
T Consensus 151 ~~~~~f~~-----------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 151 YDLGSFKT-----------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred EecCCccc-----------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 99986332 222235778999999995 2344443 3455679999876
No 256
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.7e-08 Score=103.65 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=157.2
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC----------CCCEEEEEECCCc
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET----------SDELVVSGAGDAE 87 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~----------~g~~l~s~~~dg~ 87 (732)
|...-.++.|+|.| ++|-|+. ..|.|-|..+-+.+..+ ..|...|+.+.|.|.. ..-+|+++...|.
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 34446788999877 5776664 57999999999999999 7899999999998842 1236788888999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC--C-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--N-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
|.+||...... +..+..|.+++..+.|-|. . ..+|+......+|.+|+..+++.
T Consensus 91 Iil~d~~~~s~----------~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k------------- 147 (1062)
T KOG1912|consen 91 IILVDFVLASV----------INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK------------- 147 (1062)
T ss_pred EEEEEehhhhh----------hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------------
Confidence 99999987432 4556778889999998763 2 25677777778999999999873
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC----Ccccc--cCCCCC-Ccccccc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP----LTSCQ--KRMSPP-PCVNYFC 237 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~----~~~~~--~~~~~~-~~~~~~~ 237 (732)
+|.... ......|+.+.|-+.+.+..-+..|.|-+-+.-...+ .+.++ .....+ .-.+...
T Consensus 148 -~Wk~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 148 -FWKYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred -eecccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 333222 2225677889998777777777778777776533221 11111 000000 0000000
Q ss_pred --ccccccCCCccc--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCC
Q 004739 238 --PMHLSEHGRSSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 302 (732)
Q Consensus 238 --~~~~~~~~~~~~--~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (732)
............ ....++|+|.-+.++-...-..+.|+|++-..............+.+.+.|..
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 000000000000 02346788877767777778899999998755555555455555556666653
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=7.5e-09 Score=111.60 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=118.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCC
Q 004739 26 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA 105 (732)
Q Consensus 26 ~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 105 (732)
-++++.-++++|+.-+.|.+|++...+....+ .+|++.|..+.|+-+ |.+++++|.|.++++|++++...
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~------- 209 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREV------- 209 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCccee-cccCCceEEEEEccC--CcEEEEEecCcceeeeecccccc-------
Confidence 34566668999999999999998743333345 799999999999999 69999999999999999997432
Q ss_pred CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-c
Q 004739 106 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-T 184 (732)
Q Consensus 106 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 184 (732)
......+|+..|..+.|.|. .++|++.|.+.++|+....+.. ....| .
T Consensus 210 --~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~--------------------------~y~~h~g 258 (967)
T KOG0974|consen 210 --LGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE--------------------------VYDEHSG 258 (967)
T ss_pred --cCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceeh--------------------------hhhhhhh
Confidence 12466789999999999983 8999999999999965443311 11111 2
Q ss_pred cceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
..+..++..+. ...++|++.|+.+++||+....
T Consensus 259 ~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 259 KGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cceeEEEEcCC-ceEEEeeccCcchhhhhhhccc
Confidence 26788888887 6799999999999999986543
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.96 E-value=1.1e-08 Score=96.60 Aligned_cols=246 Identities=17% Similarity=0.242 Sum_probs=149.3
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeC-C----------------------------------
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-S---------------------------------- 49 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~-~---------------------------------- 49 (732)
-..++.+.+....|...|..+-|+...+++++.+.|..+. |.. +
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt 178 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQIT 178 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceE
Confidence 3456677778888999999999998888888888775432 321 1
Q ss_pred -------CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEE
Q 004739 50 -------SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL 122 (732)
Q Consensus 50 -------~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 122 (732)
.-..+.++ .+|.+.+.+++|.|. ..+|++|..|..+.+||+....+. ...+.+|.+.|..+
T Consensus 179 ~lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g~---------~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTF-NGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKGT---------AYELQGHNDKVQAL 246 (404)
T ss_pred EEEEeecCCceEEEE-cCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcce---------eeeeccchhhhhhh
Confidence 11233444 689999999999998 489999999999999999865432 56788999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc---cce-EEeeccCCccccccC----CCCCccceEEEEecC
Q 004739 123 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE---CRN-ILLDLRCGAKRSLAD----PPKQTLSLKSCDISS 194 (732)
Q Consensus 123 ~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~----~~~~~~~v~~i~~~~ 194 (732)
...+ -.+.+.+++.||.|.+|++.........-..... |.. .+|.+.......... +-.+.+...+...+.
T Consensus 247 ~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s 325 (404)
T KOG1409|consen 247 SYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS 325 (404)
T ss_pred hhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence 8877 4478889999999999998765432111111111 110 011111000000000 000111112222222
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEE
Q 004739 195 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL 274 (732)
Q Consensus 195 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~i 274 (732)
. .....+-+..-.+|+-|.-.......-+ ..+. .....|++ |+.+.+..+-..|++++.|..|+|
T Consensus 326 ~-~~~~p~mg~e~~vR~~~~c~~~i~~~~~------t~LA------~phei~tg--ItamhlqetlglLvTsG~~Rvi~i 390 (404)
T KOG1409|consen 326 N-RSSYPTMGFEFSVRVCDSCYPTIKDEER------TPLA------IPHEIKTG--ITAMHLQETLGLLVTSGTDRVIKI 390 (404)
T ss_pred C-ccccccccceeEEEEecccchhhhcCCC------Cccc------cccccccc--eeEEEhhhhccceeecCCceEEEE
Confidence 2 2233333444456665543221111000 0011 11133444 999999888889999999999999
Q ss_pred EECCC
Q 004739 275 MDVNH 279 (732)
Q Consensus 275 wd~~~ 279 (732)
||++.
T Consensus 391 wd~~~ 395 (404)
T KOG1409|consen 391 WDVRS 395 (404)
T ss_pred Eechh
Confidence 99987
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.8e-08 Score=100.05 Aligned_cols=64 Identities=13% Similarity=0.307 Sum_probs=57.2
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCC-----CC-eEEEecCCCcEEEEcCCC
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPF-----DC-VVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~-----~~-~l~S~s~D~~i~vW~~~~ 669 (732)
++|||+.|++|| +.|++||+++++.+.+|.||.++|.+++|--+ |. .|.+...+.-|.+|-+..
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 699999999998 67999999999999999999999999999987 55 677777788899998766
No 260
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=2.9e-07 Score=84.22 Aligned_cols=237 Identities=12% Similarity=0.031 Sum_probs=148.4
Q ss_pred EEEEcC-----CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 24 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 24 ~l~~s~-----dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
.+.|.| .-.+||.|+..|...+|...+.+....+...|...|+-+.=.-+. ...+..++.|.++++.++.....
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence 355665 334899999999999999987665444434454444322211111 13466678899999999885432
Q ss_pred CCCCCCCCCCceeeccccC--ceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 99 RGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
+ +.-|.. .++++++++ ++.++++.+....|..|.+...... +.. ..
T Consensus 151 ~------------~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey-------------~~~------~~ 198 (344)
T KOG4532|consen 151 K------------FAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY-------------IEN------IY 198 (344)
T ss_pred c------------ceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce-------------eee------eE
Confidence 1 222333 388899999 4599999999999999998765421 000 01
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
+.. ....-.+.+|+.. ...+|++..||++.|||++.......... .. ..|+.+.+..+.|
T Consensus 199 ~a~---t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s--------------st--rp~hnGa~R~c~F 258 (344)
T KOG4532|consen 199 EAP---TSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEIS--------------ST--RPHHNGAFRVCRF 258 (344)
T ss_pred ecc---cCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhhc--------------cc--CCCCCCceEEEEe
Confidence 111 1123356788887 67999999999999999997643221110 00 2244457999999
Q ss_pred cCCCC--EEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccC-CCCCCccCCCccccc
Q 004739 257 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL-QPPIHDFLQTNIRVR 322 (732)
Q Consensus 257 sp~g~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 322 (732)
++-|. +|+..-.-+.+.+-|+++....+.+...++. ...+.. .+....|+.++...-
T Consensus 259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~---------~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV---------ERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred cCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc---------cccccccccccccccCCCcccc
Confidence 98763 5666666789999999998765555433322 122222 255555666555544
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.7e-07 Score=95.35 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=139.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc--CCCcCeEEEEEe------cC------------CCCCEEEEEECCCcE
Q 004739 29 SKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFV------PE------------TSDELVVSGAGDAEV 88 (732)
Q Consensus 29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~--~h~~~V~~~~~s------~~------------~~g~~l~s~~~dg~i 88 (732)
|-+.++|....||.+||||..+++....|.. .-.+..++..|. |. .+-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777732 122344444442 21 011367888889999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
.+|++..+.- .....-.+|.+.|+++.++. .-..|.+++.|+.+..|+....... .+|
T Consensus 83 ~~ys~~~g~i--------t~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~------------~~~- 140 (541)
T KOG4547|consen 83 LLYSVAGGEI--------TAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII------------RIW- 140 (541)
T ss_pred EEEEecCCeE--------EEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee------------eee-
Confidence 9999886431 11223357999999999987 4578999999999999998876521 111
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
......+.+++.+|| +..+++++ +.|++||+.+.+.+..+ .||.+
T Consensus 141 ------------~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~f--------------------tgh~s 185 (541)
T KOG4547|consen 141 ------------KEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVITF--------------------TGHGS 185 (541)
T ss_pred ------------ccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEEe--------------------cCCCc
Confidence 122336788999999 78898876 57999999998776655 66766
Q ss_pred ccEEEEEEcCC-----CCEEEEEec-CCeEEEEECCC
Q 004739 249 LHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~-----g~~l~~~~~-dg~v~iwd~~~ 279 (732)
+|+++.|--+ |.+++++.. +..+.+|-+..
T Consensus 186 -~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 186 -PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6999999876 777666644 66777886655
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=7.6e-07 Score=95.43 Aligned_cols=176 Identities=10% Similarity=0.072 Sum_probs=107.4
Q ss_pred cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004739 42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 118 (732)
Q Consensus 42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 118 (732)
.|.++|...+.. ..+ ..+...+....|+|+ |+.|+..+.+ ..|.+||+.++.. ..+......
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL 244 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence 477788765543 444 356778999999999 4777766543 3588899986432 222222334
Q ss_pred eeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004739 119 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 196 (732)
Q Consensus 119 v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 196 (732)
+....|+|++..++++...+| .|.+||+.+++.. .+. .+........|+|+
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt---~~~~~~~~~~~spD- 297 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVT---NHPAIDTEPFWGKD- 297 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Ecc---cCCCCcCCeEECCC-
Confidence 556899997755555666565 5778888776421 111 11123445689999
Q ss_pred CCEEEEEe-CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-C--
Q 004739 197 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E-- 270 (732)
Q Consensus 197 ~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g-- 270 (732)
++.|+..+ .++ .|+++|+.+++.. .+. + .+. ......|+|+|++|+..+.+ +
T Consensus 298 g~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt-----------~-------~~~---~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 298 GRTLYFTSDRGGKPQIYKVNVNGGRAE-RVT-----------F-------VGN---YNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEE-Eee-----------c-------CCC---CccceEECCCCCEEEEEEccCCce
Confidence 55555444 333 5777777665421 110 0 111 13356899999999887653 3
Q ss_pred eEEEEECCCCC
Q 004739 271 HVYLMDVNHAG 281 (732)
Q Consensus 271 ~v~iwd~~~~~ 281 (732)
.|.+||+.+++
T Consensus 356 ~l~~~dl~tg~ 366 (430)
T PRK00178 356 HVAAQDLQRGS 366 (430)
T ss_pred EEEEEECCCCC
Confidence 58888988754
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=1.1e-08 Score=105.68 Aligned_cols=189 Identities=17% Similarity=0.218 Sum_probs=137.4
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC--cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS--ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~--~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.+++.++..+|.|+-+|.++.-| +.+-|+...-..-+++ .|- =.|-.+.|+|...-.+-+.......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 67889999999999999888765 6677876543322221 232 2467888988753345555555566779999876
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC--------------------CC
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP--------------------AG 156 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~--------------------~~ 156 (732)
+.+.. -..+.+|...|+.+.|+|+.+..+++++-|-.+..||+++...... ..
T Consensus 102 s~~aI-------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 102 SSNAI-------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred Cccce-------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence 55432 4567799999999999999999999999999999999998875421 11
Q ss_pred CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
....+....+|+++.|.. ++....+|...|+++.|+..-...+.+++.|++|+.||....
T Consensus 175 asshg~~i~vwd~r~gs~-pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGST-PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhccCCceEEEeccCCCc-ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 122334466788877654 344455688889999998765567899999999999998754
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=9.6e-06 Score=78.30 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=121.8
Q ss_pred CCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 004739 40 DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC 114 (732)
Q Consensus 40 dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 114 (732)
+.-|++|++.+. +........+.+.++-++|+|+. ++|.++.. +|.|--|.++..++... .+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~--~~LY~v~~~~~~ggvaay~iD~~~G~Lt------~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQ--RHLYVVNEPGEEGGVAAYRIDPDDGRLT------FLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCC--CEEEEEEecCCcCcEEEEEEcCCCCeEE------Eeecccc
Confidence 467999998733 22111113567888999999994 78888865 47788888875433321 1111111
Q ss_pred ccCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-ccceEEEEe
Q 004739 115 HTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDI 192 (732)
Q Consensus 115 h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~ 192 (732)
-..+.+.+++++++ ++++++.. -|.|.++-++....+... ...+.....+.. ..+ ...+....|
T Consensus 87 ~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~-------v~~~~h~g~~p~------~rQ~~~h~H~a~~ 152 (346)
T COG2706 87 PGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPV-------VQVVKHTGSGPH------ERQESPHVHSANF 152 (346)
T ss_pred CCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccc-------eeeeecCCCCCC------ccccCCccceeee
Confidence 22344889999965 66666654 578999998764322100 011111111100 011 113678899
Q ss_pred cCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC
Q 004739 193 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 270 (732)
Q Consensus 193 ~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg 270 (732)
.|+ +++|++..- -..|.+|++..++....- +... ..+.....|.|+|++++.++.+. ++
T Consensus 153 tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~--------------~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~s 213 (346)
T COG2706 153 TPD-GRYLVVPDLGTDRIFLYDLDDGKLTPAD--------------PAEV----KPGAGPRHIVFHPNGKYAYLVNELNS 213 (346)
T ss_pred CCC-CCEEEEeecCCceEEEEEcccCcccccc--------------cccc----CCCCCcceEEEcCCCcEEEEEeccCC
Confidence 999 677777643 347999999965432111 1111 11223678999999999999888 99
Q ss_pred eEEEEECCCC
Q 004739 271 HVYLMDVNHA 280 (732)
Q Consensus 271 ~v~iwd~~~~ 280 (732)
+|.+|.....
T Consensus 214 tV~v~~y~~~ 223 (346)
T COG2706 214 TVDVLEYNPA 223 (346)
T ss_pred EEEEEEEcCC
Confidence 9999999883
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.5e-08 Score=101.23 Aligned_cols=176 Identities=16% Similarity=0.181 Sum_probs=125.9
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~-------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
...+.||...|++++--.+.+-+++++.|++|++|.++. ..+..++ +.|+.+|.++.|..+- ++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~l--r~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADL--RSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeecc--ceeeec--
Confidence 346889999999998777788899999999999998762 3366666 7899999999999883 677665
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeec--cccCceeEEEEecC-CCcE-EEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVG-NPHV-VWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~-~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
||-|.+||.-.+. . +..+. ...+.+..+..-|+ +..+ ++.|+...+|+++|.+..+-..
T Consensus 803 D~giHlWDPFigr--~--------Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~------- 865 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGR--L--------LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC------- 865 (1034)
T ss_pred cCcceeecccccc--h--------hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee-------
Confidence 8999999976422 1 11111 11223333444443 3333 4445788999999998876320
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 223 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~ 223 (732)
...+...++....+.+++..+. |++++++-.+|+|.+.|.++++.+..+
T Consensus 866 -------------E~kVcna~~Pna~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 866 -------------ELKVCNAPGPNALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred -------------eEEeccCCCCchheeEEEeccC-cchhhHHhcCCcEEEEecCCCceeccC
Confidence 1122233444557889999988 899999999999999999999877665
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.79 E-value=2.2e-05 Score=78.97 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=57.1
Q ss_pred ccCCCCEEEEec----------CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCC-eEEEec-CCCcEEEEcCCCCC
Q 004739 604 LGQRGDYIASGS----------DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASV 671 (732)
Q Consensus 604 ~s~dg~~lasgs----------~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~-~l~S~s-~D~~i~vW~~~~~~ 671 (732)
+++||++|.... ..+.|.++|.++++.+..+.- ...+..++|+||++ +|++.. .++.|.|.|..+++
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 466666655532 224799999999999998885 45899999999999 777666 68889999999999
Q ss_pred Ccccc
Q 004739 672 PSIVS 676 (732)
Q Consensus 672 ~~~~~ 676 (732)
.+.+.
T Consensus 334 ~i~~i 338 (352)
T TIGR02658 334 ELSSV 338 (352)
T ss_pred EEeee
Confidence 88765
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.8e-05 Score=76.51 Aligned_cols=247 Identities=12% Similarity=0.102 Sum_probs=152.5
Q ss_pred ccCCceeEEEEcCCCCEEEEEeC---CCcEEEEeCCC--CeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcE
Q 004739 17 GHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 88 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~---dg~i~vWd~~~--~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i 88 (732)
.+.+..+-|+|+|++++|.++.. +|.|-.|.+.. |+.. .+. ..-..+-..++++++ |++++++.. .|.|
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v 113 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGSV 113 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence 46778899999999999998854 47787776664 4432 222 122334488999998 588888865 6889
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCc----------eeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCCCCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAG 156 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~ 156 (732)
.++-++.. +.. ........|.+. +....+.|++ +++++.. .| .|.+|++..+......
T Consensus 114 ~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~D-ri~~y~~~dg~L~~~~- 183 (346)
T COG2706 114 SVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTD-RIFLYDLDDGKLTPAD- 183 (346)
T ss_pred EEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCc-eEEEEEcccCcccccc-
Confidence 99999753 221 112222234444 7888999966 6776653 44 6999999977643110
Q ss_pred CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCC-CCCcccccCCCCCCccc
Q 004739 157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRML-PPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~ 234 (732)
.... .....-..|.|+|+ +++..+.+ -+++|-+|..... ..+..++.....
T Consensus 184 -------------------~~~v--~~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl----- 236 (346)
T COG2706 184 -------------------PAEV--KPGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL----- 236 (346)
T ss_pred -------------------cccc--CCCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC-----
Confidence 0000 11224577999999 66665554 5899999998874 223332221111
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD 313 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (732)
|..+ .+. .+...|.++|+|++|+++.. ...|-+|.+........ +......+...+....
T Consensus 237 ---P~dF--~g~--~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~------------~~~~~~teg~~PR~F~ 297 (346)
T COG2706 237 ---PEDF--TGT--NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLE------------LVGITPTEGQFPRDFN 297 (346)
T ss_pred ---cccc--CCC--CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEE------------EEEEeccCCcCCccce
Confidence 1111 222 24778999999999998866 45888888876432211 1111222233466777
Q ss_pred cCCCccccc
Q 004739 314 FLQTNIRVR 322 (732)
Q Consensus 314 ~~~~g~~~~ 322 (732)
|.+.|+++.
T Consensus 298 i~~~g~~Li 306 (346)
T COG2706 298 INPSGRFLI 306 (346)
T ss_pred eCCCCCEEE
Confidence 888888776
No 268
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.73 E-value=2.8e-08 Score=65.52 Aligned_cols=38 Identities=39% Similarity=0.834 Sum_probs=36.6
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd 47 (732)
++++++++|.++|++|+|+|++++|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 269
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=1.1e-07 Score=86.51 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=89.0
Q ss_pred cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004739 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 142 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 142 (732)
..|.+++-+|.. .+++++|+.||.+-+||.+... .++..++.|+..++.+-|+|.++..|+++++||.+.
T Consensus 180 ~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~---------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 180 DAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA---------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccchhhhCCccc-ccEEEEecCCCeEEEEEccccc---------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 448888888886 4788888999999999999642 457788999999999999999999999999999999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEe---eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 004739 143 QHDFRQGSSCPPAGSSHQECRNILL---DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 213 (732)
Q Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd 213 (732)
.||..+.-.. ..........| ++.......-...+.....|+++... |..|++|+.-+.|++++
T Consensus 250 ~wdas~~~l~----i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLS----ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL---GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEE----ecCccccccccccCCcccceEeeeccccccceeeeeeecc---CceEEeccccceEEEec
Confidence 9998752110 00000000011 00000000001112233355555554 56899999888888875
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.72 E-value=3.9e-06 Score=86.59 Aligned_cols=228 Identities=14% Similarity=0.185 Sum_probs=134.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCC-CeeEEE---Ec---------cCCCcCeEEEEEecCCC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKLLHS---IE---------TGHSANVFCTKFVPETS 75 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~-~~~~~~---~~---------~~h~~~V~~~~~s~~~~ 75 (732)
+++.........-..++++|++++|+++. .+|.|.++++.. +..... +. ..-.....++.|+|+
T Consensus 77 ~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-- 154 (345)
T PF10282_consen 77 TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-- 154 (345)
T ss_dssp EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--
T ss_pred EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC--
Confidence 33444432334445799999999999886 489999999986 433222 10 012244688999999
Q ss_pred CCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004739 76 DELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 153 (732)
Q Consensus 76 g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~ 153 (732)
|+++++.. ....|.+|++....+.. .....+ .......+.++|+|++...+++...++.|.++++....-.
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~- 227 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKL------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS- 227 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TE------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceE------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-
Confidence 47776654 45679999998643221 111112 1234568899999977556666777889999998833210
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCC-CCCcccccCCCCCC
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRML-PPLTSCQKRMSPPP 231 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~-~~~~~~~~~~~~~~ 231 (732)
...+.... .+............|.++|+ +++|+++. .++.|.+|++... ..+....
T Consensus 228 ---------~~~~~~~~-----~~~~~~~~~~~~~~i~ispd-g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~------- 285 (345)
T PF10282_consen 228 ---------LTEIQTIS-----TLPEGFTGENAPAEIAISPD-GRFLYVSNRGSNSISVFDLDPATGTLTLVQ------- 285 (345)
T ss_dssp ---------EEEEEEEE-----SCETTSCSSSSEEEEEE-TT-SSEEEEEECTTTEEEEEEECTTTTTEEEEE-------
T ss_pred ---------eeEEEEee-----eccccccccCCceeEEEecC-CCEEEEEeccCCEEEEEEEecCCCceEEEE-------
Confidence 00111000 01001111126788999999 66666654 5678999999432 2221110
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
.. .. . +.....++++|+|++|+++.. ++.|.+|++..
T Consensus 286 ---~~---~~--~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 286 ---TV---PT--G---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ---EE---EE--S---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ---EE---eC--C---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 00 00 1 113788999999999999886 67999998753
No 271
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=3.2e-06 Score=79.08 Aligned_cols=196 Identities=12% Similarity=0.084 Sum_probs=119.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEEecCCC----CCEEEEEECCCcEE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETS----DELVVSGAGDAEVR 89 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~s~~~~----g~~l~s~~~dg~i~ 89 (732)
-.=+.++||||+.+||.+...|+|+++|+.. ..+..+... -..+|..+.|.+... ...|+.-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3446789999999999999999999999875 333344222 235677788876420 02466667788888
Q ss_pred EEEcCCCCCCCCCCCCCCCcee--ec-cccCceeEEEEecCCCcEEEEEeC-CC----------cEEEEECCCCCCCCCC
Q 004739 90 LFNLSRFSGRGLDDNAITPSAL--YQ-CHTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPA 155 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~--~~-~h~~~v~~l~~~p~~~~~l~s~s~-dg----------~i~vwd~~~~~~~~~~ 155 (732)
-|-+..+..+. ....+. +. .+...|+++.++|.. ++|+.||. .. -+..|.+-.+.+-...
T Consensus 123 Sy~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 123 SYLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred eEEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 88764321111 111222 22 246789999999965 56655542 21 3667877666543211
Q ss_pred CCCCccc---c---eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc
Q 004739 156 GSSHQEC---R---NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 225 (732)
Q Consensus 156 ~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~ 225 (732)
.....+. . ..++.+.+ .+...........|..|..+|+ +.+||+...+|.|.+|++.+.+....+..
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPd-g~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPD-GSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccccCccccccccccceeeccc--eeeeeccccCCCceEEEEECCC-CCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 1111100 0 01111110 0011111224558999999999 88999999999999999999877766643
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.70 E-value=4.9e-06 Score=97.34 Aligned_cols=298 Identities=13% Similarity=0.073 Sum_probs=161.1
Q ss_pred eEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEcc-CC------------CcCeEEEEEecCCCCCEEEEE-ECCCc
Q 004739 23 NAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELVVSG-AGDAE 87 (732)
Q Consensus 23 ~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~-~h------------~~~V~~~~~s~~~~g~~l~s~-~~dg~ 87 (732)
..++++++ ++++++-+.++.|++||.. ++.+..+-. +. -.....+++++++ +.|+.+ ...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCce
Confidence 35788874 6677777788999999975 444444411 11 1235789999873 555444 45678
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
|+++|+.+.....+.... .......+ .-.....++++|+++.++++.+.++.|++||..++........+..
T Consensus 648 Ir~id~~~~~V~tlag~G-~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNG-TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEEEEEeccC-cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 999998753210000000 00000000 0123467999997768888888889999999877542100000000
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
. ...+.. .....-.....|+++|++..++++-+.++.|++||+.++............+.....+....
T Consensus 727 ~-------~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 727 R-------NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred c-------cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 0 000000 00011124578999999444666667789999999986542100000000000000000000
Q ss_pred -cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcc
Q 004739 241 -LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI 319 (732)
Q Consensus 241 -~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 319 (732)
........ ....++++++|+.+++-+.++.|++||..++... .+.+.+... ..=.+.....-..+..+++.++|+
T Consensus 796 G~g~~~~l~-~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G--~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 796 GVGSEVLLQ-HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAG--FKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred Cchhhhhcc-CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcC--CCCCcccccccCCceEEEEeCCCC
Confidence 00000011 2468999999998888888999999999874322 222211100 000001122223567788999998
Q ss_pred ccccccccCcchhhHHHHHHHhhhhcCC
Q 004739 320 RVRGEVATGLGKCRMLVEIARNSLEEGK 347 (732)
Q Consensus 320 ~~~~~~~~~~d~~~~l~~~~~~~~~~~~ 347 (732)
.++ +-..++.+++ |++.++.
T Consensus 872 lyV---aDt~Nn~Irv-----id~~~~~ 891 (1057)
T PLN02919 872 LFV---ADTNNSLIRY-----LDLNKGE 891 (1057)
T ss_pred EEE---EECCCCEEEE-----EECCCCc
Confidence 776 7888888888 8877665
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=1.3e-05 Score=75.09 Aligned_cols=231 Identities=14% Similarity=0.145 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSR--KLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
++.+.||++||.- .|..|-|-..++. ..+. .+.+.-.-.-..++|||+ +.+||.+...|+|+++|+.....-.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeEE
Confidence 5677899988876 5677777755432 1222 232222234578999999 4899999999999999998422111
Q ss_pred CCCCCCCCceeec-cccCceeEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 101 LDDNAITPSALYQ-CHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 101 ~~~~~~~~~~~~~-~h~~~v~~l~~~p~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
. .+...+. .-...|-.+.|.+.. ...|+.-..+|.++-|-+..+.... ....
T Consensus 80 I-----~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----------------y~e~ 137 (282)
T PF15492_consen 80 I-----PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----------------YQEN 137 (282)
T ss_pred c-----CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----------------ceee
Confidence 1 1111111 123567777775532 2246666777888877764332100 0011
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCC-----------CeEEEEECCCCCCCcccccCCCC-------CCccccc
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSP-------PPCVNYF 236 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----------g~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~~ 236 (732)
..+.........|.++.++|. .++|++||.. .-+..|.+-+..+..+.-..... ..+...+
T Consensus 138 hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 138 HSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred EEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 123333445568999999998 5677776532 13667777665543332111100 1111111
Q ss_pred ccccc-ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 237 CPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 237 ~~~~~-~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
....+ ...+.....|..+..||||+.|++...+|.|.+|++.+-+
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11111 1123333469999999999999999999999999998854
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.2e-06 Score=90.80 Aligned_cols=170 Identities=14% Similarity=0.161 Sum_probs=123.6
Q ss_pred CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC--CC---CCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004739 61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR--GL---DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 135 (732)
Q Consensus 61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~--~~---~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 135 (732)
......|++|..++ .+|+.|+.||.++|-.+.+.... .. .......-+++.||+..|.-+.|+.++ +.|-|.
T Consensus 13 nnvkL~c~~WNke~--gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKES--GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTS 89 (1189)
T ss_pred CCceEEEEEEcccC--CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-cccccc
Confidence 34557899999985 79999999999999988753211 11 122233456889999999999999844 788888
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
..+|.|.+|-+-.+.-+. .+ ........|.+++|+.+ |..++..-.||.|.+=.+.
T Consensus 90 Dt~GlIiVWmlykgsW~E----------------------EM-iNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCE----------------------EM-INNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred CCCceEEEEeeecccHHH----------------------HH-hhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeec
Confidence 899999999988775320 01 11223447899999999 7788888899988877766
Q ss_pred CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+...+- + .| .....+.|++|.+.++.+-..|.+.+||.+.
T Consensus 146 GNRIwgKe-----------------L--kg---~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 146 GNRIWGKE-----------------L--KG---QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cceecchh-----------------c--ch---heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 43321100 0 11 1356789999999999999999999999876
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.67 E-value=4.2e-06 Score=97.94 Aligned_cols=245 Identities=11% Similarity=0.134 Sum_probs=137.2
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEcc-CC---------------CcCeEEEEEecCCCCCEEEEEEC
Q 004739 22 VNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIET-GH---------------SANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~-~h---------------~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
-..++++++++.|+++. ..+.|+++|+.++.. .++.. +. -..-.+++|+|+. +.++++.+.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECC
Confidence 57889999887665554 457899999877653 22211 00 1134689999953 577788788
Q ss_pred CCcEEEEEcCCCCCCCCCCCCC-CCc---eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAI-TPS---ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~-~~~---~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
++.|++||...+.......... ... ............|+++|++..++++-+.++.|++||+.++...... .+..
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~ 782 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDP 782 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-eccc
Confidence 8999999987532110000000 000 0000112346779999977557777788899999999875421000 0000
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
.....+....... ... .........+++++++ +.++++-..++.|++||..++....... .... .+....
T Consensus 783 ~~~~~l~~fG~~d--G~g-~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~-----G~~dG~ 852 (1057)
T PLN02919 783 TFSDNLFKFGDHD--GVG-SEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAG-TGKA-----GFKDGK 852 (1057)
T ss_pred ccCcccccccCCC--Cch-hhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEec-cCCc-----CCCCCc
Confidence 0000000000000 000 0001112357899998 6788888899999999998754321110 0000 000000
Q ss_pred cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
...+.-. ....++++++|+.+++-+.++.|++||+.++.
T Consensus 853 -~~~a~l~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 853 -ALKAQLS-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -ccccccC-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0011111 36789999999988888889999999998854
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.65 E-value=1.1e-05 Score=84.76 Aligned_cols=198 Identities=16% Similarity=0.079 Sum_probs=108.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
.+..+++++.++.|.-+|..+|+.+.++. -.......... + +..++.++.++.+..+|..+++. +
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG~~----------~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVD-LDERLSGGVGA--D--GGLVFVGTEKGEVIALDAEDGKE----------L 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeec-CCCCcccceEE--c--CCEEEEEcCCCEEEEEECCCCcE----------e
Confidence 35678888889999999999999887762 22211112222 2 36788888899999999986532 2
Q ss_pred eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
..... ...+.+.... .+ ..++.++.++.|..||..+++. +|........ . ..... .+
T Consensus 129 W~~~~-~~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~--------------~W~~~~~~~~-~-~~~~~----~s 185 (377)
T TIGR03300 129 WRAKL-SSEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGER--------------LWTYSRVTPA-L-TLRGS----AS 185 (377)
T ss_pred eeecc-CceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCce--------------eeEEccCCCc-e-eecCC----CC
Confidence 22211 1122111111 13 4566677889999999998873 2322211100 0 00000 01
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE-EEEEEcCCCCEEEEEec
Q 004739 190 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL-THVTFSPNGEEVLLSYS 268 (732)
Q Consensus 190 i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~sp~g~~l~~~~~ 268 (732)
.... +..++.+..++.+..+|+++++.+-........... .......+ ....+ .+..+++++.
T Consensus 186 p~~~---~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~-----------~~~~~~~~~~~p~~--~~~~vy~~~~ 249 (377)
T TIGR03300 186 PVIA---DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT-----------ELERLVDVDGDPVV--DGGQVYAVSY 249 (377)
T ss_pred CEEE---CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC-----------chhhhhccCCccEE--ECCEEEEEEc
Confidence 1111 236778888899999999888654322110000000 00000000 01111 2457888889
Q ss_pred CCeEEEEECCCCC
Q 004739 269 GEHVYLMDVNHAG 281 (732)
Q Consensus 269 dg~v~iwd~~~~~ 281 (732)
+|.++.||..+++
T Consensus 250 ~g~l~a~d~~tG~ 262 (377)
T TIGR03300 250 QGRVAALDLRSGR 262 (377)
T ss_pred CCEEEEEECCCCc
Confidence 9999999998854
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.64 E-value=2.5e-07 Score=105.20 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=67.5
Q ss_pred eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCC
Q 004739 589 VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 668 (732)
Q Consensus 589 ~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~ 668 (732)
..|...++++. +-|.-+.|.||+.+|.|++||++..+++++++. +. ...++++++..|.|+||++.
T Consensus 2333 ~~H~~gaT~l~----~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2333 TCHDGGATVLA----YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred eecCCCceEEE----EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcc
Confidence 78988888877 789999999999999999999999998888876 44 56699999999999999999
Q ss_pred CCCCccccCC
Q 004739 669 ASVPSIVSGG 678 (732)
Q Consensus 669 ~~~~~~~~~g 678 (732)
....+.+|.+
T Consensus 2399 ~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2399 EFGLLHTFPS 2408 (2439)
T ss_pred ccchhhcCch
Confidence 9998888763
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=9.2e-07 Score=85.97 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=111.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEecCCCCCEEEEE---ECCCcEEEEEcC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSG---AGDAEVRLFNLS 94 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~---~~dg~i~vwd~~ 94 (732)
+..+..++.+++||++..+....++++.... .+... .-...-+++.|..+. .....+ +....+.+|...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRED--TSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeecc--ceEEEEeecCCceeeeeeccc
Confidence 3445677889999999888877777765332 22222 222334555665553 344433 334455556554
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
. +. ...+-||-..++.++|+||+ ++|+++-.|..|++-.......+
T Consensus 141 ~--~~---------~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~I---------------------- 186 (390)
T KOG3914|consen 141 S--GR---------CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVI---------------------- 186 (390)
T ss_pred c--cC---------cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccch----------------------
Confidence 3 11 35567899999999999965 89999999999999776554321
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 225 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~ 225 (732)
-....+|...|..++.-++ +.|++|+.|++|++||+.+++.+..+..
T Consensus 187 --esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 187 --ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred --hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence 1234567889999999885 4799999999999999999998876643
No 279
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=3.8e-06 Score=89.75 Aligned_cols=176 Identities=7% Similarity=0.075 Sum_probs=103.3
Q ss_pred cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004739 42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 118 (732)
Q Consensus 42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 118 (732)
.|.++|...... ..+ ..+...+.+..|+|+ |+.|+..+. ++ .|.+||+.++... .+..+ ...
T Consensus 199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~~--------~lt~~---~g~ 263 (448)
T PRK04792 199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVRE--------KVTSF---PGI 263 (448)
T ss_pred EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCeE--------EecCC---CCC
Confidence 577778655443 334 456778899999999 477766543 33 5888888764321 12222 223
Q ss_pred eeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004739 119 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 196 (732)
Q Consensus 119 v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 196 (732)
....+|+|++..++++.+.+|. |.++|+.+++.. .+. .+........|+|+
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt---~~~~~~~~p~wSpD- 316 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RIT---RHRAIDTEPSWHPD- 316 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC-
Confidence 4468999977556566677775 777787665411 111 11223456789999
Q ss_pred CCEEEEEe-CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC--
Q 004739 197 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE-- 270 (732)
Q Consensus 197 ~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg-- 270 (732)
++.|+..+ .++ .|+++|+.+++.. .+. + .+. .....+|+|+|++|+..+. ++
T Consensus 317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt-----------~-------~g~---~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 317 GKSLIFTSERGGKPQIYRVNLASGKVS-RLT-----------F-------EGE---QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEE-EEe-----------c-------CCC---CCcCeeECCCCCEEEEEEecCCce
Confidence 55665544 344 4666677655321 110 0 111 1234689999999887765 34
Q ss_pred eEEEEECCCCC
Q 004739 271 HVYLMDVNHAG 281 (732)
Q Consensus 271 ~v~iwd~~~~~ 281 (732)
.|.++|+.++.
T Consensus 375 ~I~~~dl~~g~ 385 (448)
T PRK04792 375 NIARQDLETGA 385 (448)
T ss_pred EEEEEECCCCC
Confidence 45566776643
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=6.2e-08 Score=93.91 Aligned_cols=150 Identities=9% Similarity=0.099 Sum_probs=103.6
Q ss_pred cCCCCCCCCcccccccccCCcc----eeeccCCCCccccccCCCCCCCCCCCCCCCC---CccccccccccceeEeeecc
Q 004739 521 HTSVPGDEGRDVEANFLHGSLN----VRIHRRGDSARETVDANGSSGSPSSSSQNDR---IPYQPETVIDMKQRYVGHCN 593 (732)
Q Consensus 521 ~~~~s~~~d~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~gh~~ 593 (732)
++++.+..++...+..+.++.. .....-....+.+.|-.+.+.+..+-..+|. .+|.... .......||-.
T Consensus 75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~~lGhvS 152 (390)
T KOG3914|consen 75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEPILGHVS 152 (390)
T ss_pred eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcchhhhhhh
Confidence 6666666665554544432221 1111122233555565666655554333333 3355443 24556679988
Q ss_pred ccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEE-ecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004739 594 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP 672 (732)
Q Consensus 594 ~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l-~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~ 672 (732)
.++.|. +|||+++|.|+.+|..|+|=.++.--.+..| -||++-|..++.-++.. |+|+|.|++||+||+.++++
T Consensus 153 ml~dVa----vS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 153 MLLDVA----VSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred hhheee----ecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCc
Confidence 877777 7999999999999999999888876666655 57999999999987655 88999999999999999999
Q ss_pred ccccC
Q 004739 673 SIVSG 677 (732)
Q Consensus 673 ~~~~~ 677 (732)
+.++.
T Consensus 228 L~t~d 232 (390)
T KOG3914|consen 228 LDTCD 232 (390)
T ss_pred ccccc
Confidence 97764
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.61 E-value=1.1e-05 Score=80.79 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=76.8
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCCCCc--cccccccccceeEeeeccccceeeecccccCCCCEEEEecCC---CcEE
Q 004739 547 RRGDSARETVDANGSSGSPSSSSQNDRIP--YQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD---GRWF 621 (732)
Q Consensus 547 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~D---g~i~ 621 (732)
...++|..++|+|+++.+++..+-....+ ++..+. + +|.+-...-.-+. |||.++|++.++-| |.|-
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l--~~~~Pe~~rNT~~----fsp~~r~il~agF~nl~gni~ 343 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--L--RFYFPEQKRNTIF----FSPHERYILFAGFDNLQGNIE 343 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc--e--EEecCCccccccc----ccCcccEEEEecCCccccceE
Confidence 45788999999999999887753333333 444442 2 2222211111133 79999999997654 7899
Q ss_pred EEEcCcccEEE-EEecCcccEEEEeecCCCCeEEEe--c----CCCcEEEEcCCCCCCc
Q 004739 622 IWEKQTGRLIK-MLLGDEAVVNCVQCHPFDCVVATS--G----IDNTIKIWTPSASVPS 673 (732)
Q Consensus 622 iWd~~tg~~~~-~l~gH~~~V~~v~fsp~~~~l~S~--s----~D~~i~vW~~~~~~~~ 673 (732)
+||....-.+. .+.|-.. .-+.|+||+.++.+. | .|..|+|||+...+-.
T Consensus 344 i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 344 IFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 99977554443 7776443 446799999955443 3 3889999999776543
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.9e-07 Score=93.59 Aligned_cols=181 Identities=15% Similarity=0.208 Sum_probs=121.3
Q ss_pred EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEE
Q 004739 54 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 133 (732)
Q Consensus 54 ~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 133 (732)
+..+ .+|+..|..+.-..++ +-+++++.|.+|++|.++..... .....+..+++.|+.+|.++.|-.+. ++++
T Consensus 728 L~nf-~GH~~~iRai~AidNE--NSFiSASkDKTVKLWSik~EgD~---~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~ 800 (1034)
T KOG4190|consen 728 LCNF-TGHQEKIRAIAAIDNE--NSFISASKDKTVKLWSIKPEGDE---IGTSACQFTYQAHKKPIHDIGFLADL-RSIA 800 (1034)
T ss_pred eecc-cCcHHHhHHHHhcccc--cceeeccCCceEEEEEeccccCc---cccceeeeEhhhccCcccceeeeecc-ceee
Confidence 4455 6999999988777664 78999999999999999842111 11123567889999999999998843 6665
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE-eCCCeEEEE
Q 004739 134 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLY 212 (732)
Q Consensus 134 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg-~~dg~v~iw 212 (732)
+.||.|.+||.--+..... +.+..+. +....|.++.- -+ ..++++| +...+|+++
T Consensus 801 --ScD~giHlWDPFigr~Laq----------~~dapk~----------~a~~~ikcl~n-v~-~~iliAgcsaeSTVKl~ 856 (1034)
T KOG4190|consen 801 --SCDGGIHLWDPFIGRLLAQ----------MEDAPKE----------GAGGNIKCLEN-VD-RHILIAGCSAESTVKLF 856 (1034)
T ss_pred --eccCcceeecccccchhHh----------hhcCccc----------CCCceeEeccc-Cc-chheeeeccchhhheee
Confidence 4588999999866653310 1111111 11122333321 12 3344444 778999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|.+..+-...+..... .+... .+.+++..|.|+.++++-..|.|.+.|.++++
T Consensus 857 DaRsce~~~E~kVcna---------------~~Pna-~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 857 DARSCEWTCELKVCNA---------------PGPNA-LTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred ecccccceeeEEeccC---------------CCCch-heeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 9998764433321100 12222 48899999999999999999999999999965
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=5.9e-08 Score=102.48 Aligned_cols=206 Identities=17% Similarity=0.223 Sum_probs=143.2
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
...+++..++++.|+..-+|++|+.+.++|+.|+..|.|+++++.+|...... ..|..+|+-+.=+.++ ..+++.+.
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dg--s~~Ltsss 1163 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDG--STQLTSSS 1163 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCCc--ceeeeecc
Confidence 45678899999999999999999999999999999999999999999998888 7999999999988884 55555443
Q ss_pred -CC-cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 85 -DA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 85 -dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
.. -..+|++..-. .+.+.+.+ -.++.|+..- ..-+.|.......+||+++...+...
T Consensus 1164 ~S~PlsaLW~~~s~~---------~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~ty------- 1222 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTG---------GPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTY------- 1222 (1516)
T ss_pred ccCchHHHhcccccc---------Cccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHh-------
Confidence 33 57799987521 22455543 3467777533 22333444456889999998754211
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
+.......+.-+...|+|+ ..+++ .||. +||.+..+.++.+.. ..
T Consensus 1223 --------------lt~~~~~~y~~n~a~FsP~-D~LIl---ndGv--LWDvR~~~aIh~FD~-------------ft-- 1267 (1516)
T KOG1832|consen 1223 --------------LTDTVTSSYSNNLAHFSPC-DTLIL---NDGV--LWDVRIPEAIHRFDQ-------------FT-- 1267 (1516)
T ss_pred --------------cCcchhhhhhccccccCCC-cceEe---eCce--eeeeccHHHHhhhhh-------------he--
Confidence 1111112223367889998 44553 4553 799998766554421 00
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
. -..-.|+|.|..++..+ .|||+++.+
T Consensus 1268 -----~--~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1268 -----D--YGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred -----e--cccccccCCCceEEeec-----hhhhhHHHH
Confidence 0 11236899999888865 589999954
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=7.5e-05 Score=75.24 Aligned_cols=235 Identities=13% Similarity=0.129 Sum_probs=128.4
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeeEEEEccCCC------cCeEEEEEec
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGHS------ANVFCTKFVP 72 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----------dg~i~vWd~~~~~~~~~~~~~h~------~~V~~~~~s~ 72 (732)
.+.+.++..-..+- .+ +||||+.|.++.. +..|.|||+.+.+.+.++..+-+ .....++++|
T Consensus 37 ~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 37 GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence 34444444322222 24 9999998776654 78999999999999998843211 2234788999
Q ss_pred CCCCCEEEEEE-C-CCcEEEEEcCCCCCCCCCCCCCCCceeecc---------------------------ccCceeEE-
Q 004739 73 ETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQC---------------------------HTRRVKKL- 122 (732)
Q Consensus 73 ~~~g~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------------------------h~~~v~~l- 122 (732)
+ |++|+... . +..|-+.|+.+.+-...-.. ..+...+.. ++..+...
T Consensus 115 d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~ 191 (352)
T TIGR02658 115 D--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPE 191 (352)
T ss_pred C--CCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCC
Confidence 9 58887665 3 68899999986431100000 000000000 00000000
Q ss_pred --------EEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC
Q 004739 123 --------AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS 194 (732)
Q Consensus 123 --------~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 194 (732)
.|.+.++.++..... |.|.+-|+....... ...+.+.+-... ...-....+.-+++++
T Consensus 192 ~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~~---~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 192 DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAEK---ADGWRPGGWQQVAYHR 257 (352)
T ss_pred ccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeecccccc---ccccCCCcceeEEEcC
Confidence 112212233333333 666666654332110 000000000000 0000222334489999
Q ss_pred CCCCEEEE-Ee---------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE
Q 004739 195 TRPHLLLV-GG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV 263 (732)
Q Consensus 195 ~~~~~l~t-g~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l 263 (732)
++ +.+++ .. ..+.|.++|..+.+.+..+. -++ .+..++++||++ +|
T Consensus 258 dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------------------vG~---~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 258 AR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------------------LGH---EIDSINVSQDAKPLL 314 (352)
T ss_pred CC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-------------------CCC---ceeeEEECCCCCeEE
Confidence 94 55555 31 22579999999987665542 112 488999999999 88
Q ss_pred EEEe-cCCeEEEEECCCCCCcce
Q 004739 264 LLSY-SGEHVYLMDVNHAGGRAM 285 (732)
Q Consensus 264 ~~~~-~dg~v~iwd~~~~~~~~~ 285 (732)
++.. .++.|.++|..+.+....
T Consensus 315 yvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEEee
Confidence 8777 478999999999765443
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.54 E-value=3.9e-07 Score=94.63 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=142.4
Q ss_pred EeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 13 RELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
..+.||..+|+.+.|+|.. ..||+++.|-.|..||+..... +..+ ..-...-..++|+-.. ++ +.+.+..+.|++
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~-p~-vlasshg~~i~v 184 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKD-PN-VLASSHGNDIFV 184 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccC-cc-hhhhccCCceEE
Confidence 4577999999999999854 5899999999999999987653 4444 3444556789998763 34 444566788999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
||++.+. .++..+++|...|+.++|.......+.+++.|++|+.||..........
T Consensus 185 wd~r~gs---------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--------------- 240 (1081)
T KOG0309|consen 185 WDLRKGS---------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--------------- 240 (1081)
T ss_pred EeccCCC---------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce---------------
Confidence 9999754 5688999999999999998765567889999999999998775421000
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
. .....+|..-.+-|-+..+++ ---.+..+.+++.++...... ....++.+..| .||.+
T Consensus 241 -----~----vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n---~~~~~~pVh~F-------~GH~D- 300 (1081)
T KOG0309|consen 241 -----T----VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN---VFDLNTPVHTF-------VGHDD- 300 (1081)
T ss_pred -----e----ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc---cccCCcceeee-------cCcch-
Confidence 0 001123444444444211211 111122455555444321110 01112334444 66665
Q ss_pred cEEEEEEcCCC----------CEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNG----------EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g----------~~l~~~~~dg~v~iwd~~~ 279 (732)
.|....|-..+ -.|++=+.|..+++|-+.+
T Consensus 301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 35545554322 2689999999999998876
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=4.5e-05 Score=80.30 Aligned_cols=193 Identities=9% Similarity=0.062 Sum_probs=113.2
Q ss_pred ceeEEEEcCCCCE-EEEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcC
Q 004739 21 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLS 94 (732)
Q Consensus 21 ~V~~l~~s~dg~~-lasg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~ 94 (732)
.+..-.|+|||+. ++..+. +..|.++|+.+++..... ...+.+....|+|++ ..++++.+.++ .|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG-~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDG-SKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCC-CEEEEEEccCCCcEEEEEECC
Confidence 6778999999984 664443 356889999888765544 345556778899995 23444555444 46666776
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
.+. ...+..+........|+|++..++++....+ .|.+.|+.+++..
T Consensus 266 ~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-------------------- 314 (419)
T PRK04043 266 TKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-------------------- 314 (419)
T ss_pred CCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--------------------
Confidence 532 2233333333345679997755555554444 4667777665421
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCC---------CeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.+... +. . ...|+|+ |+.|+..... ..|.+.|+.++.. ..+.
T Consensus 315 ---rlt~~-g~--~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT------------------- 365 (419)
T PRK04043 315 ---QVVFH-GK--N--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT------------------- 365 (419)
T ss_pred ---eCccC-CC--c--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC-------------------
Confidence 11111 11 1 1379999 5666655543 3678888876642 1110
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecC-C--eEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~d-g--~v~iwd~~~ 279 (732)
.+. ......|+|||+.|+..+.+ + .+.+.++..
T Consensus 366 ~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 366 ANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 010 12247899999988777653 2 466666655
No 287
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.1e-05 Score=79.94 Aligned_cols=196 Identities=12% Similarity=0.144 Sum_probs=126.4
Q ss_pred cCCceeEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCCee-----EEEEccCCCcCeEEEEEecCCCCCEEEEE-EC
Q 004739 18 HQGCVNAISWNSKG--SLLIS-----GSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVVSG-AG 84 (732)
Q Consensus 18 h~~~V~~l~~s~dg--~~las-----g~~dg~i~vWd~~~~~~-----~~~~~~~h~~~V~~~~~s~~~~g~~l~s~-~~ 84 (732)
|...|+.+.+||.+ ..+|+ +|.-..|+||....... .+.| ....=..+.|.+.+.+-++++. .-
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCCceEEEEEEEee
Confidence 67889999999864 35553 35567899998762211 1222 1222246778877532222222 22
Q ss_pred CC---------cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE-EeCCCcEEEEECCCCCCCCC
Q 004739 85 DA---------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPP 154 (732)
Q Consensus 85 dg---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-~s~dg~i~vwd~~~~~~~~~ 154 (732)
|. ++++.++... .+...+. -.++|.++.|+|.+..+.+. |-.=-.+.|+|++-.-
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~----------s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---- 305 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGE----------SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---- 305 (566)
T ss_pred cCCCccccccceEEEEEecCc----------eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----
Confidence 33 4777777621 1133333 37899999999966433333 3344578899986532
Q ss_pred CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCC
Q 004739 155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP 231 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~ 231 (732)
++++..| +-+++-|+|. |++|+.+|.+ |.|-|||+.+.+.+.++..
T Consensus 306 -----------v~df~eg-------------pRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a------ 354 (566)
T KOG2315|consen 306 -----------VFDFPEG-------------PRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA------ 354 (566)
T ss_pred -----------eEeCCCC-------------CccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc------
Confidence 3333332 4467889999 7788777764 7899999999877665421
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEec------CCeEEEEECCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNH 279 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~------dg~v~iwd~~~ 279 (732)
. .-+-+.|+|||+++++++. |+.++||+...
T Consensus 355 --------------~---~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 355 --------------A---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred --------------C---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 1 2456899999999999976 68899999876
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=8.4e-06 Score=86.39 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=94.8
Q ss_pred cCCceeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR 89 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~-----dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i~ 89 (732)
..+.....+|||||+.||..+. +-.+.+|++..+ .....+...+.......+|+|+ |+.|+..+ .+|...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ 306 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPR 306 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence 3445567899999998886553 223445777653 2223332233344567899999 47666554 567666
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CC--CcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED--GTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
+|.+...... .....+..+...+....|+|++ +.|+..+ .+ ..|.+||+.+++..
T Consensus 307 ly~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~-------------- 364 (428)
T PRK01029 307 IYIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY-------------- 364 (428)
T ss_pred EEEEECcccc-------cceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE--------------
Confidence 6654321100 0123333444566788999976 5555443 33 36889998776521
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeC--CCeEEEEECCCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGS--DAFARLYDRRMLP 218 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~--dg~v~iwd~~~~~ 218 (732)
.+.. ....+....|+|+ ++.|+. +.. ...|+++|+..++
T Consensus 365 ---------~Lt~---~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 365 ---------QLTT---SPENKESPSWAID-SLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred ---------EccC---CCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCC
Confidence 1111 1123456889999 666654 332 3568888987654
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.43 E-value=0.00064 Score=78.40 Aligned_cols=210 Identities=10% Similarity=0.083 Sum_probs=130.6
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEE----eCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVW----SYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vW----d~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
..+.|.++.|-++...|+.+..+|.|.+. +..+.. .+. .-+..|.+++||||+ .+|+....++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~--Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDE--ELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCc--CEEEEEeCCCEEEEE
Confidence 34689999999999989999999999999 544432 333 346789999999994 888888888887765
Q ss_pred EcC----C---------CC-----------CCCCCCCCCC--------Cc------eeeccccCceeEEEEecCCCcEEE
Q 004739 92 NLS----R---------FS-----------GRGLDDNAIT--------PS------ALYQCHTRRVKKLAVEVGNPHVVW 133 (732)
Q Consensus 92 d~~----~---------~~-----------~~~~~~~~~~--------~~------~~~~~h~~~v~~l~~~p~~~~~l~ 133 (732)
+-. . +. ..+.+....+ +. ..+. +.+.-..|+|-.|+ .+||
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFA 225 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFA 225 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEE
Confidence 322 0 00 0000000000 00 1122 34456778999855 8888
Q ss_pred EEeC---C---CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC--
Q 004739 134 SASE---D---GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-- 205 (732)
Q Consensus 134 s~s~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-- 205 (732)
+.+- . ..+|||+-+ +... ...+ .-.+--.+++|-|. |++||+.-.
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~-----------------------stSE--~v~gLe~~l~WrPs-G~lIA~~q~~~ 278 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQ-----------------------STSE--PVDGLEGALSWRPS-GNLIASSQRLP 278 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEE-----------------------eccc--cCCCccCCccCCCC-CCEEEEEEEcC
Confidence 7664 2 478999865 3311 0000 11112346899999 788888754
Q ss_pred -CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 206 -DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 206 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
...|.+|.-+..+ -..+..+ ..+....|..+.|++++..|+....|. |.+|-..+..
T Consensus 279 ~~~~VvFfErNGLr-hgeF~l~-----------------~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 279 DRHDVVFFERNGLR-HGEFTLR-----------------FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCcEEEEEecCCcE-eeeEecC-----------------CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 3456677654332 1112111 112223589999999999999977654 9999888743
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.40 E-value=0.00011 Score=73.27 Aligned_cols=120 Identities=15% Similarity=0.211 Sum_probs=95.4
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg-~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
+|...|.-..+.-+++-++.|..|| .+-|+|..+++... + ...-+.|.++..+|+ |++++.+.....|-+.|+.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence 6888899999998988999999999 89999988876554 4 366788999999999 58899988888888889987
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCC
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSS 151 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~ 151 (732)
+..+ ..-+...+-|+.+.|+| +.++||-+--+| .|+++|+..++.
T Consensus 433 gnv~----------~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 433 GNVR----------LIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCee----------EecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 5422 22234457799999999 558888776555 688999987653
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=8e-06 Score=86.47 Aligned_cols=191 Identities=14% Similarity=0.171 Sum_probs=128.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
.+.++|++++ ++.|+-|..+|.|++.+.... ....+ .|... +..|.+++||+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~~~~~--~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-PKTNF--DHSSS--------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-ccccc--ccccc--------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 5677888887 678999999999999986533 22222 45443 33379999999999999998876432
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecC----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
...+. ...++.+++++|+ ..+.+++|+.-| +.++.-+=....
T Consensus 106 ----------~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------- 151 (846)
T KOG2066|consen 106 ----------ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------- 151 (846)
T ss_pred ----------ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------
Confidence 22222 3568999999996 346788999888 766643211100
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
..+ ......++|.++.|. |+++|-+..+| |+|||..+.+.+..++.+...++. ......+
T Consensus 152 ~~v-~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~---------------e~fpphl 211 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP---------------ELFPPHL 211 (846)
T ss_pred cce-eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc---------------ccCCCce
Confidence 000 122345699999998 66888887665 999999998877665433211111 1123457
Q ss_pred EEcCCCCEEEEEecCCeEEEEECC
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
.|.++.+ |+.|-.| +|+|..++
T Consensus 212 ~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 212 HWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred EecCCCe-EEEecCC-eEEEEEEe
Confidence 8887764 7777666 78888887
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=4.1e-06 Score=78.40 Aligned_cols=238 Identities=17% Similarity=0.250 Sum_probs=139.8
Q ss_pred CceeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCe-------------------------------------eE----EE
Q 004739 20 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-------------------------------------LL----HS 56 (732)
Q Consensus 20 ~~V~~l~~s~dg~--~lasg~~dg~i~vWd~~~~~-------------------------------------~~----~~ 56 (732)
..|+.+.|..++. .++..+.|.+|++|.+.... .+ ++
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4688888886542 44455678999999875320 00 00
Q ss_pred -EccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004739 57 -IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 135 (732)
Q Consensus 57 -~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 135 (732)
....|.--|++++|..+. ..+++ +.|=+|.+|++....+.-. ....+| ..+......|++..|+|...+.+.-.
T Consensus 166 vyaNaH~yhiNSiS~NsD~--et~lS-aDdLrINLWnl~i~D~sFn-IVDiKP-~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 166 VYANAHPYHINSISFNSDK--ETLLS-ADDLRINLWNLEIIDGSFN-IVDIKP-HNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred eccccceeEeeeeeecCch--heeee-ccceeeeeccccccCCceE-EEeccC-ccHHHHHHHHhhcccCHhHcceEEEe
Confidence 113577778999999883 56665 4588899999987543210 000111 12223345789999999877777777
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
+..|.|++-|+++...+..... ++.+.-. ........+-...|..+.|+++ |+++++-. --+|+|||.+
T Consensus 241 sSkG~Ikl~DlRq~alcdn~~k--------lfe~~~D-~v~~~ff~eivsSISD~kFs~n-gryIlsRd-yltvkiwDvn 309 (460)
T COG5170 241 SSKGEIKLNDLRQSALCDNSKK--------LFELTID-GVDVDFFEEIVSSISDFKFSDN-GRYILSRD-YLTVKIWDVN 309 (460)
T ss_pred cCCCcEEehhhhhhhhccCchh--------hhhhccC-cccchhHHHHhhhhcceEEcCC-CcEEEEec-cceEEEEecc
Confidence 8889999999997765411100 0000000 0011112223447889999998 77777655 4689999998
Q ss_pred CCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 216 MLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+ ++.++.. .|...-...... ....-..-..+.|+-+.+.+++|+..+..-||-..+
T Consensus 310 m~k~pikTi~~-----h~~l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 310 MAKNPIKTIPM-----HCDLMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred cccCCceeech-----HHHHHHHHHhhh-hccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 754 3333211 010000000000 000000123578899999999999998888887554
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=3.8e-06 Score=87.19 Aligned_cols=213 Identities=13% Similarity=0.192 Sum_probs=140.6
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee---------------EEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---------------LHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~---------------~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
.+....|+.|+....++|+|+.||.++|-.+.+... -+++ .||.+.|.-+.|..+ .+.|-|+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtS 89 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTS 89 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--ccccccc
Confidence 356678999999999999999999999998764321 1223 699999999999988 3889999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
..+|.|.||-+-.++... -......+..|.++.|+.++ ..|...-.||.|.+=.+....
T Consensus 90 Dt~GlIiVWmlykgsW~E--------EMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNR------------ 148 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCE--------EMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNR------------ 148 (1189)
T ss_pred CCCceEEEEeeecccHHH--------HHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccce------------
Confidence 999999999988654211 11222345679999999955 788888899998887765543
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
+|+.. . .......+.|++| .+.++.+-.+|.+.+||.+..-.+ ++.. .|....... ..
T Consensus 149 ---IwgKe---------L--kg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~-Kl~~-----~c~Vn~tg~-~s 206 (1189)
T KOG2041|consen 149 ---IWGKE---------L--KGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNFER-KLEK-----DCEVNGTGI-FS 206 (1189)
T ss_pred ---ecchh---------c--chheccceeeccc-HHHHHhhhcCCcEEEecccccHHH-hhhh-----ceEEeeeee-ec
Confidence 22211 0 1113457889998 667777778899999997643211 1100 111000000 00
Q ss_pred cCCCccccEEEEEE--------cCCCCEEEEEecCCeEEEEECCC
Q 004739 243 EHGRSSLHLTHVTF--------SPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 243 ~~~~~~~~i~~l~~--------sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..++ .|..+.| -|+...|+++-..|.+.|..-.+
T Consensus 207 ~~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 207 NFPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred CCCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 0011 1333443 35788899999999888876555
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.33 E-value=7.5e-05 Score=68.87 Aligned_cols=198 Identities=13% Similarity=0.036 Sum_probs=128.8
Q ss_pred EEEEeCCCcEEEEeCCCCeeEEEEccCCC--cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce-
Q 004739 34 LISGSDDTHINVWSYSSRKLLHSIETGHS--ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA- 110 (732)
Q Consensus 34 lasg~~dg~i~vWd~~~~~~~~~~~~~h~--~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~- 110 (732)
+..++.|.++++.++.-+.....+ |. -.+++++++++ +.++++.+....|..|.+....... +.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~~ 197 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------ENI 197 (344)
T ss_pred eeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------eee
Confidence 555677888888877644332222 22 23889999999 5899999999999999998644322 22
Q ss_pred eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004739 111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 190 (732)
Q Consensus 111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 190 (732)
......+.-.+..|+..+ ..+|++..||++.|||++....+-. ..-...+.|.+.+..+
T Consensus 198 ~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~--------------------~~sstrp~hnGa~R~c 256 (344)
T KOG4532|consen 198 YEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMA--------------------EISSTRPHHNGAFRVC 256 (344)
T ss_pred EecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccchh--------------------hhcccCCCCCCceEEE
Confidence 333445566778888844 8999999999999999988653210 0112234588899999
Q ss_pred EecCCCCC-EEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC
Q 004739 191 DISSTRPH-LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 269 (732)
Q Consensus 191 ~~~~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d 269 (732)
.|++.+.- +|...-.=+.+.+-|+++.+..+.+.- +... +..|....|..-.|+.++..+.+.+.+
T Consensus 257 ~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i------------~~d~-~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 257 RFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI------------PDDV-ERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred EecCCCcceEEEEecCcceEEEEEcccCceeeEEec------------Cccc-cccccccccccccccCCCcccccccch
Confidence 99975322 344433346899999999865433211 1111 122333347788888888777777665
Q ss_pred CeEEEEECCC
Q 004739 270 EHVYLMDVNH 279 (732)
Q Consensus 270 g~v~iwd~~~ 279 (732)
.+.-|++.+
T Consensus 324 -~~ae~ni~s 332 (344)
T KOG4532|consen 324 -QGAEYNILS 332 (344)
T ss_pred -hhheeeccc
Confidence 455566665
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1e-06 Score=83.70 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=105.4
Q ss_pred CCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccc----cccceeEeeeccccceeeecc
Q 004739 527 DEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETV----IDMKQRYVGHCNVGTDIKQAS 602 (732)
Q Consensus 527 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~gh~~~~~~i~~~~ 602 (732)
+.+..+-+-++.+..-..+. ...+|.++.|.-.+..+..|+-++..-+++.... ....+.+. |...++++..+.
T Consensus 231 G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq 308 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQ 308 (425)
T ss_pred cccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhc
Confidence 33444445555555555555 5677899999988888888843333333544332 33444443 777888888777
Q ss_pred cccCCCCEEEEecCCCcEEEEEcCcccE---EEEEecCcccEEEEeec--CCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004739 603 FLGQRGDYIASGSDDGRWFIWEKQTGRL---IKMLLGDEAVVNCVQCH--PFDCVVATSGIDNTIKIWTPSASVPSIVSG 677 (732)
Q Consensus 603 f~s~dg~~lasgs~Dg~i~iWd~~tg~~---~~~l~gH~~~V~~v~fs--p~~~~l~S~s~D~~i~vW~~~~~~~~~~~~ 677 (732)
| ++++|++.+-+|+|++||.+--++ +.+..||...-.-+-++ +....++++|.|...|||.++.+..+.+..
T Consensus 309 ~---s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 309 F---SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred c---ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 7 679999999999999999987777 99999996544433333 455689999999999999999999888765
Q ss_pred C
Q 004739 678 G 678 (732)
Q Consensus 678 g 678 (732)
-
T Consensus 386 f 386 (425)
T KOG2695|consen 386 F 386 (425)
T ss_pred C
Confidence 3
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.31 E-value=4.3e-06 Score=76.47 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=59.8
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVL 264 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~ 264 (732)
.|++++-+|...+++++|+.||.+-+||.++......+ + ..|.. +|+.+-|+| ++..|+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~------------l-------~ahk~-~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL------------L-------KAHKA-EIWEVHFHPKNPEHLF 240 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH------------H-------HHhhh-hhhheeccCCCchhee
Confidence 48888889987888999999999999999986322111 1 33444 599999999 678999
Q ss_pred EEecCCeEEEEECCC
Q 004739 265 LSYSGEHVYLMDVNH 279 (732)
Q Consensus 265 ~~~~dg~v~iwd~~~ 279 (732)
+++.||.+.-||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999886
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=8.2e-05 Score=74.00 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=127.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-cEEEEEcCCCCCCCCCCCCCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-EVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
+|.+++..|. |.+.|.+...+-.+. .+|.+.|.-..+..+. +-++.|..|| .+-|+|.+++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e----------- 393 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGE----------- 393 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCce-----------
Confidence 6888888875 788888877665553 4788889888888874 6788899998 89999999743
Q ss_pred ceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004739 109 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 188 (732)
Q Consensus 109 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (732)
+..+.+.-+.|.++..+|++ +.++.+.....|.+.|+.++... +. -.....-|+
T Consensus 394 ~kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~-------------~i------------dkS~~~lIt 447 (668)
T COG4946 394 VKRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVR-------------LI------------DKSEYGLIT 447 (668)
T ss_pred EEEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCee-------------Ee------------cccccceeE
Confidence 46666777899999999955 88888888888999999988631 11 112345789
Q ss_pred EEEecCCCCCEEEEEeCCC----eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEE
Q 004739 189 SCDISSTRPHLLLVGGSDA----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 264 (732)
Q Consensus 189 ~i~~~~~~~~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~ 264 (732)
.+.|+|+ ++++|-+--+| .|+++|+..++...... +.++ =.+-+|.|++++|+
T Consensus 448 df~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT------------------~ta~----DfsPaFD~d~ryLY 504 (668)
T COG4946 448 DFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT------------------PTAY----DFSPAFDPDGRYLY 504 (668)
T ss_pred EEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeEEEecC------------------Cccc----ccCcccCCCCcEEE
Confidence 9999999 88999887665 58999999875332110 0111 23458899999887
Q ss_pred EEec
Q 004739 265 LSYS 268 (732)
Q Consensus 265 ~~~~ 268 (732)
--+.
T Consensus 505 fLs~ 508 (668)
T COG4946 505 FLSA 508 (668)
T ss_pred EEec
Confidence 6654
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.4e-05 Score=78.79 Aligned_cols=249 Identities=14% Similarity=0.086 Sum_probs=158.3
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccC-CCcCeEEEEEecCCCCCEEE-EEECCC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVV-SGAGDA 86 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~-h~~~V~~~~~s~~~~g~~l~-s~~~dg 86 (732)
+.+..+..|...|..++.+-+|.++.|++. |..++++|+.+-..+..+... -.+.+ ++..+|...-..|+ +.-.++
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCC
Confidence 345556678888999999999999999877 999999998876544332111 11222 12222221001333 334578
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccceE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNI 165 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~ 165 (732)
.+.|+|-.....+ ....-.-|..+|..+.+.|.+ +.+++....|.|.-|..... +.+ ....
T Consensus 123 ~i~VvD~~~d~~q--------~~~fkklH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfP---------r~~l 184 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQ--------DGYFKKLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFP---------RTNL 184 (558)
T ss_pred CcEEECCcCCcCc--------cceecccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCc---------cccc
Confidence 9999997753222 134445689999999999954 88889888999999998741 110 0111
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc--ccccc--c
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY--FCPMH--L 241 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~ 241 (732)
.|.++. ...+...+.......++.|+|+ +..+.+-+.|..||+++.++++.++.+........+... +...+ +
T Consensus 185 ~~~~K~--eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 185 NFELKH--ETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred cccccc--cchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 222221 1233444556667889999999 789999999999999999999877666543322111110 00000 0
Q ss_pred c--------cCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 242 S--------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 242 ~--------~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
. ...|....-+.+.|...|++|+-++-= -|++.++.+..
T Consensus 262 gRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~ 308 (558)
T KOG0882|consen 262 GRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNT 308 (558)
T ss_pred hhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCe
Confidence 0 011333345778999999999988765 47889998844
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.4e-05 Score=73.87 Aligned_cols=87 Identities=11% Similarity=0.239 Sum_probs=75.1
Q ss_pred ccccEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 9 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
++....+.+|...|..++|||..+ +|..++.+.+|+|.|+++..++..+ ..| ..+.+++|.-++ .++|+.|...|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCce
Confidence 344557778999999999999877 7888999999999999999998888 566 789999999986 588999999999
Q ss_pred EEEEEcCCCCC
Q 004739 88 VRLFNLSRFSG 98 (732)
Q Consensus 88 i~vwd~~~~~~ 98 (732)
|.|||++...+
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999997543
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-05 Score=78.98 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=143.5
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEEEEc
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--R-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL 93 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~vwd~ 93 (732)
|.+-|+.+.-+ -.+++.+++.||.++.|.... + +.+..+ ..|-..|.+++.+-+ |.++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence 77777776554 357999999999999997543 2 344445 578889999999988 588888777 999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
....... ...+..-.+.+..+ .+|.+. .+.++.-.++.+.++|-......
T Consensus 84 En~Dmin--------miKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q------------------- 135 (558)
T KOG0882|consen 84 ENFDMIN--------MIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ------------------- 135 (558)
T ss_pred eccchhh--------hcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCc-------------------
Confidence 8643210 11111122222211 222111 23334456788999996654321
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCC-CcccccCCCCCCccccccccccccCCCccc
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
...+...|..+|..+.+++. +..+++....|.|.-|.... .+. ...+....+... .+..-.....
T Consensus 136 ----~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT--------dLy~f~K~Kt 202 (558)
T KOG0882|consen 136 ----DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET--------DLYGFPKAKT 202 (558)
T ss_pred ----cceecccccCceEEEEeecc-ccceeeccccceeEeecCCCcccCccccccccccccc--------hhhccccccc
Confidence 22233346668999999998 77899998899999998873 110 000110001000 0111111122
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 286 (732)
..+++.|+|+|..+.+-+.|..|+++++++++..+.+
T Consensus 203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred CccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 4788999999999999999999999999998755443
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=3.1e-05 Score=83.15 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=130.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
++..++-|+--..+..+|+.+.+..+.. .-....|+-+... ++++.+|...|+|.+-|+++. +.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~----------~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF----------ETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCcC----------cee
Confidence 3456777777778888999988877665 2223335555443 378999999999999999863 458
Q ss_pred eeeccccCceeEEEEecCCCcEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004739 110 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180 (732)
Q Consensus 110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (732)
+++.+|++.|.++... +++|++||. |..|+|||++..+.+..+ ..+
T Consensus 211 ht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI----------------------~~~ 265 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI----------------------QFP 265 (1118)
T ss_pred eeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCc----------------------ccc
Confidence 9999999999988874 488888874 567899999988754221 111
Q ss_pred CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
.+ -.-+.|.|.-...+++++..|...+-|..+.. +... +.. ....+..+..+.++++
T Consensus 266 ~~----P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~----------~~~--------v~p~~s~i~~fDiSsn 323 (1118)
T KOG1275|consen 266 YG----PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG----------VKM--------VNPNGSGISAFDISSN 323 (1118)
T ss_pred cC----chhhhhcccccceEEEEecccceeeccccccCCCccc----------eeE--------EccCCCcceeEEecCC
Confidence 11 12345667666789999999999999854321 1000 000 1111223899999999
Q ss_pred CCEEEEEecCCeEEEEE
Q 004739 260 GEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 260 g~~l~~~~~dg~v~iwd 276 (732)
|+.++.|..+|.|.+|.
T Consensus 324 ~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 324 GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CceEEEecccCcEeeec
Confidence 99999999999999997
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=2.9e-06 Score=80.72 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=96.3
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~-----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
-++.|.++.|...++++..|..+|.|.+.|++.. .+...+ -|...|+++.....+ +++|++.+-+|+|++||
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s-~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFS-QQKLMASDMTGKIKLYD 327 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccc-cceEeeccCcCceeEee
Confidence 3567888899988999999999999999999754 455566 699999999888743 58999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEE--EecCCCcEEEEEeCCCcEEEEECCCCCCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSSC 152 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~ 152 (732)
++.-+.. .-+..+.||...-.-+- ..+ ....+++++.|...|||.+..+..+
T Consensus 328 ~R~~K~~-------~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 328 LRATKCK-------KSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred ehhhhcc-------cceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCcee
Confidence 9864332 22777888865433333 334 3467888999999999999988743
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00018 Score=76.66 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=112.6
Q ss_pred eeeccCCceeEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecC---CCCC
Q 004739 14 ELEGHQGCVNAISWNSK-------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE---TSDE 77 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~d-------------g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~---~~g~ 77 (732)
.|..|.+.|.-..+..+ |.+++||+.||+|.|-.+.+.+....+ ....++.+++++|+ ...+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence 34457777766665544 999999999999999999888877766 46678999999997 1126
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004739 78 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 157 (732)
.+++|+..| +.++.-.-...+ . ...+..-.++|.++.|. ++++|-++.+| |++||+.+++.+.....
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk-------~-~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNK-------D-SVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred heeecCcce-EEEehhhhhcCc-------c-ceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 899999888 777653321111 1 11345567899999995 48998888776 99999998875432222
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.+... .....-..+.|.++ ..|+.|-. .+|+|..++.
T Consensus 198 p~~~~-------------------R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 198 PSQSV-------------------RPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK 234 (846)
T ss_pred CCCCC-------------------CcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence 21110 11112235677765 46777654 4799998883
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.12 E-value=6.9e-05 Score=80.56 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=116.5
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC----
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---- 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---- 85 (732)
+..+...--...|+-|+. ++++|.+|...|+|.+-|..+.+.++++ ..|.+.|.++... |++|++|+..
T Consensus 168 ~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~R~~ 240 (1118)
T KOG1275|consen 168 KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSMRRY 240 (1118)
T ss_pred eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccceeeeecc----CCeEEEeecccccc
Confidence 333333333444555554 5789999999999999999999999999 8999999887654 5789999764
Q ss_pred -----CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 86 -----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 86 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
.-|+|||++.... +..+.-+.++ .-+.|+|.-...++.++..|...+-|..+-....
T Consensus 241 ~l~~D~FvkVYDLRmmra----------l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~------- 302 (1118)
T KOG1275|consen 241 NLAMDPFVKVYDLRMMRA----------LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP------- 302 (1118)
T ss_pred cccccchhhhhhhhhhhc----------cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc-------
Confidence 4589999997432 2222223332 4567888777788899999999999844332110
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
. ....+. .....+.++.++++ +..++.|..+|.|.+|.-+.
T Consensus 303 ~-~~~~v~-------------p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 303 A-GVKMVN-------------PNGSGISAFDISSN-GDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred c-ceeEEc-------------cCCCcceeEEecCC-CceEEEecccCcEeeecCCC
Confidence 0 000000 11224889999998 88999999999999998443
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.11 E-value=0.00015 Score=83.39 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=131.9
Q ss_pred cCCceeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcE
Q 004739 18 HQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV 88 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~------dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i 88 (732)
+.+.-..|+|-.||+++|+.+- -+.+|||+-+ |....+- ..-.+--.+++|-|. |++|++.-. ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence 5566778999999999998864 2579999944 6544433 344444567899999 588888764 3446
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
.+|.-.. ... .+....+......|..+.|++++ .+||..-.|. |.+|-..+.. |-
T Consensus 284 vFfErNG---Lrh----geF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH----------------WY 338 (928)
T PF04762_consen 284 VFFERNG---LRH----GEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH----------------WY 338 (928)
T ss_pred EEEecCC---cEe----eeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE----------------EE
Confidence 6665432 110 01111122345678999999955 8888877654 9999887654 11
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC----CCCCC------------------ccccc-
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPL------------------TSCQK- 225 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~----~~~~~------------------~~~~~- 225 (732)
++. .+... ....+..+.|+|.....|...+.+|.+..++.. ..... ..+..
T Consensus 339 LKq----ei~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 339 LKQ----EIRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEE----EEEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 110 01110 111233478888777777777776666554432 11100 00000
Q ss_pred CCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 226 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+||-|...+ .-..+|..++|++++..+++-..||.|.+|....
T Consensus 413 ~VPPPMs~~~l---------~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 413 VVPPPMSSYEL---------ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCchHhceEE---------cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11222222221 1123699999999998899999999999998665
No 306
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.07 E-value=0.00044 Score=66.25 Aligned_cols=231 Identities=14% Similarity=0.145 Sum_probs=116.6
Q ss_pred cEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 12 ERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
.+.+.+-.+.+..++|+|+.. ++++....+.|...+. +|+.+.++.-.-.+...+|++..+ +.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 356777777899999999755 5566667788888886 578887774333466889999876 455565545899999
Q ss_pred EEcCCCCCCCCCCCCCC--CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 91 FNLSRFSGRGLDDNAIT--PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+++........ ..... .+.....++..+-.++|.|.+.++++ +-+..-..++.+..... ... .....
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~-------~~~--~~~~~ 159 (248)
T PF06977_consen 91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPG-------GFD--LFVSD 159 (248)
T ss_dssp EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT--------SS----EEEE
T ss_pred EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccC-------ccc--eeecc
Confidence 99854221110 00000 00111134556899999996655554 45555566766654110 000 00000
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
. ..+.........+.+++++|..+++++.......|..+| .+++.+..+...... +- ..+.-
T Consensus 160 ~-----~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----------~g--l~~~~ 221 (248)
T PF06977_consen 160 D-----QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----------HG--LSKDI 221 (248)
T ss_dssp ------HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----------GG---SS--
T ss_pred c-----cccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----------cC--ccccc
Confidence 0 000101112235788999999888999998999999999 455544433211100 00 00011
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLM 275 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iw 275 (732)
...-.|+|.++|+ |+..+.-+..++|
T Consensus 222 ~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 222 PQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred CCccEEEECCCCC-EEEEcCCceEEEe
Confidence 1366799999996 6666666666665
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.04 E-value=0.0017 Score=63.61 Aligned_cols=189 Identities=14% Similarity=0.159 Sum_probs=116.8
Q ss_pred eeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc---C-CCcCeEEEEEecCCCCCEEEEEECC--------CcE
Q 004739 22 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV 88 (732)
Q Consensus 22 V~~l~~s-~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~---~-h~~~V~~~~~s~~~~g~~l~s~~~d--------g~i 88 (732)
...+++. +++.++++ ... .+.++|+.+++....... . .....+.+++.|+ |++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence 6677777 67655554 444 466669998865444321 1 3466899999999 5777776644 445
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
..++.. ++ +..+...-...+.|+|+|++..++++-+..+.|..+++...... ......+.+
T Consensus 118 ~~~~~~-~~-----------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~ 178 (246)
T PF08450_consen 118 YRIDPD-GK-----------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID 178 (246)
T ss_dssp EEEETT-SE-----------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred EEECCC-Ce-----------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence 556655 11 23333345667899999977556667788889999998654310 001111222
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
+. ......-.+++..+ |++.++....+.|.++|.+ ++.+..+.. ...
T Consensus 179 ~~-----------~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~-G~~~~~i~~--------------------p~~ 225 (246)
T PF08450_consen 179 FP-----------GGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPD-GKLLREIEL--------------------PVP 225 (246)
T ss_dssp -S-----------SSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETT-SCEEEEEE---------------------SSS
T ss_pred cC-----------CCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCC-ccEEEEEcC--------------------CCC
Confidence 11 11234678999998 7888888889999999988 655444321 111
Q ss_pred ccEEEEEEc-CCCCEEEEEe
Q 004739 249 LHLTHVTFS-PNGEEVLLSY 267 (732)
Q Consensus 249 ~~i~~l~~s-p~g~~l~~~~ 267 (732)
.+++++|- |+.+.|++.+
T Consensus 226 -~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 -RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SEEEEEEESTTSSEEEEEE
T ss_pred -CEEEEEEECCCCCEEEEEe
Confidence 48999994 6767776654
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.03 E-value=0.0013 Score=64.59 Aligned_cols=215 Identities=12% Similarity=0.066 Sum_probs=126.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEe-cCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 24 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV-PETSDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 24 ~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s-~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
+..|.+ ++.++++--..+.|..|+..+++..... ... ...+.+. ++ ..|+.+...+ +.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~---g~l~v~~~~~-~~~~d~~~g~~~-- 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPD---GRLYVADSGG-IAVVDPDTGKVT-- 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS---EEEEEEECTT---SEEEEEETTC-EEEEETTTTEEE--
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC---CceEEEEccC---CEEEEEEcCc-eEEEecCCCcEE--
Confidence 567888 7777777778899999999888665422 122 6788888 55 4555555544 556688764321
Q ss_pred CCCCCCCceeec--c-ccCceeEEEEecCCCcEEEEEeCC--------CcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 102 DDNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 102 ~~~~~~~~~~~~--~-h~~~v~~l~~~p~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
.+.... . .....+.+++.|++ ++.++.... |.|..++.. ++. ..+..
T Consensus 74 ------~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~~-- 131 (246)
T PF08450_consen 74 ------VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVAD-- 131 (246)
T ss_dssp ------EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEEE--
T ss_pred ------EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeE------------EEEec--
Confidence 122221 1 34568899999965 676665543 446666665 220 01110
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC-CcccccCCCCCCccccccccccccCCCccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
.....+.|+|+|++..++++-+..+.|..+++..... +... +.+ ... .... .
T Consensus 132 ------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------~~~--~~~--~~~~-g 184 (246)
T PF08450_consen 132 ------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNR----------RVF--IDF--PGGP-G 184 (246)
T ss_dssp ------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEE----------EEE--EE---SSSS-C
T ss_pred ------------CcccccceEECCcchheeecccccceeEEEeccccccceeee----------eeE--EEc--CCCC-c
Confidence 1124679999999433455667788999999864322 1110 000 000 1111 1
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeee
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 298 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (732)
..-.+++..+|++.++....+.|.+++.. ++....+......+..++|
T Consensus 185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 36789999999988877789999999988 4543333333234444444
No 309
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.96 E-value=2.3e-05 Score=50.85 Aligned_cols=39 Identities=36% Similarity=0.553 Sum_probs=36.4
Q ss_pred ccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004739 628 GRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 666 (732)
Q Consensus 628 g~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~ 666 (732)
++++..+.+|...|++++|+|.+.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567888999999999999999999999999999999996
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.95 E-value=0.0013 Score=69.25 Aligned_cols=196 Identities=11% Similarity=0.073 Sum_probs=109.1
Q ss_pred cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECC---CcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 42 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 42 ~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
.|.+=|..... .+.+..+ . .+..-.|+|++ + .++..+.+ ..|.++|+.++.. ..+....+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~-~~~~p~wSpDG--~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------~~lt~~~g 233 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-G-LNIFPKWANKE--QTAFYYTSYGERKPTLYKYNLYTGKK-----------EKIASSQG 233 (419)
T ss_pred eEEEECCCCCc-eeEEccC-C-CeEeEEECCCC--CcEEEEEEccCCCCEEEEEECCCCcE-----------EEEecCCC
Confidence 45555544333 3334233 3 77889999994 5 35544433 4588888876432 22222345
Q ss_pred ceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
......|+|++..++++.+.++ .|.++|+..++.. .+..... ......|+||
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-----------------------~LT~~~~---~d~~p~~SPD 287 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-----------------------QITNYPG---IDVNGNFVED 287 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-----------------------EcccCCC---ccCccEECCC
Confidence 5667789998766666665554 5667777655411 1111111 1234479999
Q ss_pred CCCEEEEEe-CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004739 196 RPHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 269 (732)
Q Consensus 196 ~~~~l~tg~-~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--- 269 (732)
|+.|+-.+ ..+ .|.+.|+.+++..... + .+. ....|+|+|++|+..+..
T Consensus 288 -G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt------------~-------~g~-----~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 288 -DKRIVFVSDRLGYPNIFMKKLNSGSVEQVV------------F-------HGK-----NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred -CCEEEEEECCCCCceEEEEECCCCCeEeCc------------c-------CCC-----cCceECCCCCEEEEEEcCCCc
Confidence 55555444 333 5777788765421100 0 111 124899999988777653
Q ss_pred ------CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 270 ------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 270 ------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
..|++.|+.++....... . + ......|+|||+.++
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~~LT~-----------~----~---~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIRRLTA-----------N----G---VNQFPRFSSDGGSIM 383 (419)
T ss_pred ccCCCCcEEEEEECCCCCeEECCC-----------C----C---CcCCeEECCCCCEEE
Confidence 267777887754221111 0 0 112356899999887
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.0011 Score=68.93 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=88.1
Q ss_pred hccccEeeeccCCceeEEEEcC-CCCEEEEE----eCCCc----EEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCC
Q 004739 8 RLSQERELEGHQGCVNAISWNS-KGSLLISG----SDDTH----INVWSYSSRK--LLHSIETGHSANVFCTKFVPETSD 76 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg----~~dg~----i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g 76 (732)
+++++-..+--.++ .++.||. +...+.|. +.+|. -++|++...+ ++....-.....|.|++++|++
T Consensus 195 klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-- 271 (545)
T PF11768_consen 195 KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-- 271 (545)
T ss_pred cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc--
Confidence 34444444433344 5777886 34445443 23443 3466665443 3333334688899999999995
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 150 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~ 150 (732)
+.++.|+.||.|.+||.... +..+....-.++.++|+|++ .+|++|+..|.+.+||+.-..
T Consensus 272 ~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 272 DKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecCc
Confidence 89999999999999999853 23333456678999999954 899999999999999987654
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0013 Score=70.88 Aligned_cols=203 Identities=13% Similarity=0.138 Sum_probs=124.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC-eEEEEEecCCCCCEEEEEECCCc-----EEEEEcCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLSRFSG 98 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~-V~~~~~s~~~~g~~l~s~~~dg~-----i~vwd~~~~~~ 98 (732)
-+|++.+..+|.|+.+|.|.+.+ ...+.++.+ +.+... |..+..... .++|++.+.|+. |+||+++..++
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEecccccCC
Confidence 34678888999999999888776 344455667 677766 554544443 268888887754 99999986543
Q ss_pred CCCCCCCCCCc--eeecc-----ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 99 RGLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 99 ~~~~~~~~~~~--~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
... ..++ +.+.. ...++.+++.+.+ -..+|.|-.+|.|..+.=.-.... .
T Consensus 105 n~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDr-----------------g- 161 (933)
T KOG2114|consen 105 NNS----PQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDR-----------------G- 161 (933)
T ss_pred CCC----cceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcc-----------------c-
Confidence 220 1222 12222 2456888899885 588999999999988842211100 0
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
. ..........+|+++.+..++...+.+++. ..|.+|.+....+.... ..+.+.++
T Consensus 162 --s-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~gr~p~~~~--------------------ld~~G~~l 217 (933)
T KOG2114|consen 162 --S-RQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSGRTPSLKV--------------------LDNNGISL 217 (933)
T ss_pred --c-ceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecCCCcceee--------------------eccCCccc
Confidence 0 111122344589999999884432444443 46889998743211110 12334468
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|..|++....+++++. ..|.+|+...
T Consensus 218 nCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 218 NCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred eeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 88888876654555543 4788888775
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.90 E-value=0.012 Score=62.34 Aligned_cols=201 Identities=11% Similarity=0.045 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEE------EEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~------~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
.+..+++++.++.+.-+|..+|+.+.+........+.. +.-.|--.+..++.++.++.+..+|.++++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~----- 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV----- 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence 35577778888999999999999887763222111100 0001100135677788899999999987543
Q ss_pred CCCCCceeeccccCceeE-EEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004739 104 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 182 (732)
Q Consensus 104 ~~~~~~~~~~~h~~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (732)
+...... ..+.+ .... + ..++.+..++.|..+|..+++. +|....... .+ ....
T Consensus 143 -----~W~~~~~-~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~--------------~W~~~~~~~-~~-~~~~ 197 (394)
T PRK11138 143 -----AWQTKVA-GEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAV--------------KWTVNLDVP-SL-TLRG 197 (394)
T ss_pred -----cccccCC-CceecCCEEE--C-CEEEEECCCCEEEEEEccCCCE--------------eeeecCCCC-cc-cccC
Confidence 2222211 11111 1121 3 4555677789999999999873 333322100 00 0000
Q ss_pred CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC--CC
Q 004739 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG 260 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~g 260 (732)
...++ .. +..++.++.++.+..+|..+++.+-......+.. .........+.-+| .+
T Consensus 198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~--------------~~~~~~~~~~~~sP~v~~ 256 (394)
T PRK11138 198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG--------------ATEIDRLVDVDTTPVVVG 256 (394)
T ss_pred CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCC--------------ccchhcccccCCCcEEEC
Confidence 01111 11 2256777888999999999887543321110000 00000000111112 24
Q ss_pred CEEEEEecCCeEEEEECCCCC
Q 004739 261 EEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 261 ~~l~~~~~dg~v~iwd~~~~~ 281 (732)
..+++++.+|.++.+|..+++
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCC
Confidence 567788889999999998854
No 314
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0037 Score=64.00 Aligned_cols=225 Identities=10% Similarity=0.105 Sum_probs=123.8
Q ss_pred CCceeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeeEEEEcc--CCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 19 QGCVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~-----------dg~i~vWd~~~~~~~~~~~~--~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.-.|.-+.|||+.+||+|-+. ...++|||+.+|...+.|.. +....-.-..||.+ ++++|--..
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~- 325 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG- 325 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-
Confidence 346888999999999999763 14789999999998888832 11122244689988 467765554
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCc
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~ 160 (732)
..|.||+........ .+.+ .-..|....|+|. +++||--... ..+.+-.+.+++.+......+.
T Consensus 326 ~sisIyEtpsf~lld--------~Ksl--ki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 326 NSISIYETPSFMLLD--------KKSL--KISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred ceEEEEecCceeeec--------cccc--CCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 678999877521100 0111 1345777888884 3666532211 1233344333332211111110
Q ss_pred ccceEEe-----------------------------eccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-C--CCe
Q 004739 161 ECRNILL-----------------------------DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-S--DAF 208 (732)
Q Consensus 161 ~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~--dg~ 208 (732)
..-.+.| .+..... ++ ....-...|...+|.|. |+.+++-+ . ..+
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pv-e~velke~vi~FaWEP~-gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PV-EVVELKESVIAFAWEPH-GDKFAVISGNTVKNT 471 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cc-eeeecchheeeeeeccC-CCeEEEEEccccccc
Confidence 0000111 1100000 00 00112336677899999 45554443 3 357
Q ss_pred EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEEEEECCC
Q 004739 209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNH 279 (732)
Q Consensus 209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~iwd~~~ 279 (732)
+++|-+.+... . +..+..+ .. ...+.+.|+|.|++++++.- .|.+..+|+..
T Consensus 472 vsfY~~e~~~~--~-------~~lVk~~---------dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 472 VSFYAVETNIK--K-------PSLVKEL---------DK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeEEEeecCCC--c-------hhhhhhh---------cc-cccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 88888874211 0 0111111 01 13788999999999988744 68999999875
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.83 E-value=0.002 Score=62.69 Aligned_cols=173 Identities=16% Similarity=0.158 Sum_probs=96.7
Q ss_pred EEEcCCCCEEEEEe-----CCCcEEEEeCC-CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-------CCcEEEE
Q 004739 25 ISWNSKGSLLISGS-----DDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-------DAEVRLF 91 (732)
Q Consensus 25 l~~s~dg~~lasg~-----~dg~i~vWd~~-~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-------dg~i~vw 91 (732)
-.||+||++|.+.= ..|.|-|||.. +-+.+.++ ..|.-.-..+.+.|+ |+.|+.+.. .|..++
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~kL- 131 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRAKL- 131 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCceec-
Confidence 57999999999873 35889999999 66788888 667666678889999 467766521 233333
Q ss_pred EcCCCCCCCC--CCCCCCCce--ee--ccccCceeEEEEecCCCcEEEEEeCCCc-------EEEEECCCCCCCCCCCCC
Q 004739 92 NLSRFSGRGL--DDNAITPSA--LY--QCHTRRVKKLAVEVGNPHVVWSASEDGT-------LRQHDFRQGSSCPPAGSS 158 (732)
Q Consensus 92 d~~~~~~~~~--~~~~~~~~~--~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~~~ 158 (732)
|+.+.+.... +......+. .+ .-|..+|..+++.+++ ..++..-..|. |-+++.... .
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~--~------ 202 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA--L------ 202 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc--c------
Confidence 2222111100 000011122 23 3366778888888754 33333222221 111111110 0
Q ss_pred CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004739 159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 222 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~ 222 (732)
..+..... ........+-+|++++++....+|+-..+.+.+||..+++.+..
T Consensus 203 ------~~~~~p~~------~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 203 ------RLLPAPEE------QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ------eeccCChH------HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 00000000 01123458899999998444446666788999999999875543
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.78 E-value=1e-05 Score=83.36 Aligned_cols=168 Identities=23% Similarity=0.329 Sum_probs=113.1
Q ss_pred eeccCCceeEEEEcC-CCCEEEEEe----CCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 15 LEGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 15 l~~h~~~V~~l~~s~-dg~~lasg~----~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
..+|..+.++++|++ |.+.||.|- .|..+.|||+.++ +....|..+......+++|..+. +++.+|...
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~--klvlaGm~s 175 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT--KLVLAGMTS 175 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc--chhhccccc
Confidence 346778999999998 667888773 4678999998876 22223322244556688888774 889999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEE-CCCCCCCCCCCCCCcccce
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~ 164 (732)
..++++|++... .....-.+..+..+.+.|..++++++-. ||.|.+|| .+.-+.+..
T Consensus 176 r~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~---------- 233 (783)
T KOG1008|consen 176 RSVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ---------- 233 (783)
T ss_pred chhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH----------
Confidence 999999998421 1111112345667788887778886655 89999999 444332110
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRM 216 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~ 216 (732)
..+.........+..++|+|....++++...| ++|+++|+..
T Consensus 234 ----------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 ----------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ----------HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 01111122333688999999866677777765 7899999864
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.77 E-value=0.006 Score=64.17 Aligned_cols=207 Identities=19% Similarity=0.176 Sum_probs=109.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
++..++.++.++.+..+|..+|+.+.+.. -...+.+.-... +..++.++.++.|..||.++++. +
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~~----------~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLVA---NGLVVVRTNDGRLTALDAATGER----------L 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEEE---CCEEEEECCCCeEEEEEcCCCce----------e
Confidence 45678888889999999999999887762 222232211112 25677778899999999987532 2
Q ss_pred eeeccccCce-----eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC----------------CCc--------
Q 004739 110 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS----------------SHQ-------- 160 (732)
Q Consensus 110 ~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------~~~-------- 160 (732)
..+......+ .+.... + ..++.+..++.+..+|+++++..-.... ..+
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 2221111100 011111 2 3566777778888888877764311000 000
Q ss_pred ----ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004739 161 ----ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 236 (732)
Q Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 236 (732)
......++..++......... ....... . +..+++++.+|.|..+|..+++.+-....
T Consensus 246 ~~~~~g~l~a~d~~tG~~~W~~~~~----~~~~p~~--~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~----------- 307 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRVLWKRDAS----SYQGPAV--D-DNRLYVTDADGVVVALDRRSGSELWKNDE----------- 307 (377)
T ss_pred EEEcCCEEEEEECCCCcEEEeeccC----CccCceE--e-CCEEEEECCCCeEEEEECCCCcEEEcccc-----------
Confidence 000112222222211111100 0011111 2 34677777788888888877754322100
Q ss_pred cccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004739 237 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
. .+. ...+... .+..|++++.+|.|+++|..+++..
T Consensus 308 ----~--~~~---~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 308 ----L--KYR---QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred ----c--cCC---ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 0 000 0111122 3568999999999999999887543
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.73 E-value=0.016 Score=56.52 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=133.0
Q ss_pred eeEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCeeEEEEccCCCcCeE--EEEEecCCCCCEEEEEE-----CCCcEEEEE
Q 004739 22 VNAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGA-----GDAEVRLFN 92 (732)
Q Consensus 22 V~~l~~s~-dg~~lasg~~dg~-i~vWd~~~~~~~~~~~~~h~~~V~--~~~~s~~~~g~~l~s~~-----~dg~i~vwd 92 (732)
...++.+| .+..++.+-.-|+ ..+||..+++.+..+ ....+.-+ .-.|+++ |++|++.= ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEE
Confidence 34678888 5566777766654 688999999988877 33333322 3679999 58888863 357899999
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
.... ...+..+..|.-....+.+.|++ ..|+.+. |-|.-- ..+++. +...........+++..+|
T Consensus 84 ~~~~---------~~ri~E~~s~GIGPHel~l~pDG-~tLvVAN--GGI~Th-pd~GR~--kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 84 AARG---------YRRIGEFPSHGIGPHELLLMPDG-ETLVVAN--GGIETH-PDSGRA--KLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred CcCC---------cEEEeEecCCCcChhhEEEcCCC-CEEEEEc--CCCccC-cccCce--ecChhhcCCceEEEecCCC
Confidence 9831 12366777777777889999966 5554442 222111 111110 1111122233455556667
Q ss_pred ccccccCC--CCCccceEEEEecCCCCCEEEEEeCCC-------eEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 173 AKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGSDA-------FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 173 ~~~~~~~~--~~~~~~v~~i~~~~~~~~~l~tg~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
........ ..|...|..+++.++ |..++..=..| .|-+++... .+..+..+.. ..
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~-----------~~-- 212 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEE-----------QW-- 212 (305)
T ss_pred ceeeeeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChH-----------HH--
Confidence 65555444 447778999999998 54433332222 133333222 1111110000 00
Q ss_pred CCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGG 282 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~ 282 (732)
..- ...+-+|++++++..+++.+- .+.+.+||..++..
T Consensus 213 ~~l-~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 213 RRL-NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred Hhh-CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 001 124889999999998877766 67999999999653
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.68 E-value=0.0039 Score=60.73 Aligned_cols=192 Identities=17% Similarity=0.154 Sum_probs=109.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
++.++++++.++.|..||..+|+.+.++. . ...+.......+ ..++.++.++.|..+|..+++. +
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~-~~~~~~~~~~~~---~~v~v~~~~~~l~~~d~~tG~~----------~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFD-L-PGPISGAPVVDG---GRVYVGTSDGSLYALDAKTGKV----------L 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEE-C-SSCGGSGEEEET---TEEEEEETTSEEEEEETTTSCE----------E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEee-c-cccccceeeecc---cccccccceeeeEecccCCcce----------e
Confidence 56677778899999999999999988873 2 222222122222 5677777888999999887532 3
Q ss_pred eee-ccc----c-CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004739 110 ALY-QCH----T-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 183 (732)
Q Consensus 110 ~~~-~~h----~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (732)
... ... . .......+. +..++.+..++.|..+|+.+++. +|........ .......
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~--------------~w~~~~~~~~-~~~~~~~ 161 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKL--------------LWKYPVGEPR-GSSPISS 161 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEE--------------EEEEESSTT--SS--EEE
T ss_pred eeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcE--------------EEEeecCCCC-CCcceee
Confidence 331 111 1 111222332 36677778789999999999873 3332211100 0000000
Q ss_pred ccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004739 184 TLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 262 (732)
Q Consensus 184 ~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 262 (732)
...+..-....+ + .++.++.++. +.+ |+.+++.+-.. . .. .+.. ...+.+..
T Consensus 162 ~~~~~~~~~~~~-~-~v~~~~~~g~~~~~-d~~tg~~~w~~--------------------~--~~-~~~~-~~~~~~~~ 214 (238)
T PF13360_consen 162 FSDINGSPVISD-G-RVYVSSGDGRVVAV-DLATGEKLWSK--------------------P--IS-GIYS-LPSVDGGT 214 (238)
T ss_dssp ETTEEEEEECCT-T-EEEEECCTSSEEEE-ETTTTEEEEEE--------------------C--SS--ECE-CEECCCTE
T ss_pred ecccccceEEEC-C-EEEEEcCCCeEEEE-ECCCCCEEEEe--------------------c--CC-CccC-CceeeCCE
Confidence 011122222223 4 6666777775 555 99887632110 0 00 1222 13567788
Q ss_pred EEEEecCCeEEEEECCCCC
Q 004739 263 VLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 263 l~~~~~dg~v~iwd~~~~~ 281 (732)
|++++.++.|..||+.+++
T Consensus 215 l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTEEEEEETTTTE
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 8888899999999999964
No 320
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.66 E-value=3.2e-05 Score=79.84 Aligned_cols=209 Identities=13% Similarity=0.192 Sum_probs=130.6
Q ss_pred CCceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeeE-EEEccCCCcCeEEEEEecCCCCCEEEEEE----CCCcEEEE
Q 004739 19 QGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGA----GDAEVRLF 91 (732)
Q Consensus 19 ~~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~~~~~-~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----~dg~i~vw 91 (732)
...+.|+++.-+. ..++.|..+|.|-+-.+....-- +.+..+|....++++|++-. -+.||.|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence 4567788776543 47889999999999877644322 44446888999999999862 35677763 25679999
Q ss_pred EcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 92 NLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
|+.+.-..+ +....+. +......+++|.. +.+++.+|...+.++++|++.....
T Consensus 135 di~s~ltvP------ke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~------------------ 189 (783)
T KOG1008|consen 135 DINSLLTVP------KESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDS------------------ 189 (783)
T ss_pred ecccccCCC------ccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhh------------------
Confidence 998641111 0011111 2344566888885 5578888888889999999854311
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEE-CCCCC-CCcccccCCCCCCccccccccccccCCCcc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
... -....+..+..+|-.++++++-. ||.|.+|| .++.+ ++..+... .....
T Consensus 190 ---~~s-----vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~-----------------~N~~~ 243 (783)
T KOG1008|consen 190 ---VSS-----VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRN-----------------ENKKP 243 (783)
T ss_pred ---hhh-----hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhC-----------------CCCcc
Confidence 000 01225566777785466776655 99999999 44332 11111100 01101
Q ss_pred ccEEEEEEcCCCC-EEEEEec-CCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGE-EVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~-~l~~~~~-dg~v~iwd~~~ 279 (732)
..+..++|+|... .|++.+. .++|+++++..
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 1488899999543 3444444 68999999876
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.62 E-value=0.00026 Score=73.32 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=63.6
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
.....|.|++++|+.++|+.|..||.|.+||...+.... ....-..+.++|+|+ |..+++|+..|.+.+||+..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---AKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---eeecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence 467899999999999999999999999999987764332 234566799999999 58999999999999999984
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0017 Score=68.44 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=90.1
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
|...|.--+++..+++++.|+.-|.+++++-..++....-..+-.+.+..+..+++. .++|.|+..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh--HhhhhhcCCceEEeehhhccC
Confidence 556676677888899999999999999999877766544423444556666778873 788888889999999877522
Q ss_pred CCCCCCCCCCCce-eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 98 GRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
... ...+. .-+.|...|+++.|++++ ..+++|...|.|..-.+..
T Consensus 110 p~~-----~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRD-----LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCc-----ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 111 01111 112378899999999954 8888999999999888877
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.56 E-value=0.00017 Score=46.53 Aligned_cols=39 Identities=33% Similarity=0.633 Sum_probs=35.3
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 47 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd 47 (732)
.+....+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356678889999999999999999999999999999996
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.55 E-value=0.015 Score=65.54 Aligned_cols=213 Identities=10% Similarity=0.067 Sum_probs=128.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC--CC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RF 96 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~--~~ 96 (732)
.+.|.++.|..++.-++.+..+|.|.+-|..+...... ..-...|.+++|+|++ +.++-....+++.+-+-. --
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv--g~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV--GNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee--eeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccch
Confidence 36899999999999888888999999998887654321 2356789999999995 888888777776653321 00
Q ss_pred CCCCCC---CCCCCCc--------eeecc---------------------ccCceeEEEEecCCCcEEEEE-----eCCC
Q 004739 97 SGRGLD---DNAITPS--------ALYQC---------------------HTRRVKKLAVEVGNPHVVWSA-----SEDG 139 (732)
Q Consensus 97 ~~~~~~---~~~~~~~--------~~~~~---------------------h~~~v~~l~~~p~~~~~l~s~-----s~dg 139 (732)
..+.+. ....+.+ ..+.| ..+.=++|.|--|+ .+||+. ...+
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTR 222 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCce
Confidence 000000 0000000 01110 11223458888744 788763 2227
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE---eCCCeEEEEECCC
Q 004739 140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRRM 216 (732)
Q Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg---~~dg~v~iwd~~~ 216 (732)
.|++||-+ +..- .. .....+.-.+++|-|. |.++++- ++|+.|.+|..+.
T Consensus 223 kirV~drE-g~Ln-----------------------s~--se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 223 KIRVYDRE-GALN-----------------------ST--SEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred eEEEeccc-chhh-----------------------cc--cCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecCC
Confidence 89999976 3311 00 0111223467899997 7788775 3466799998654
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE---EecCCeEEEEECCCCC
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNHAG 281 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~---~~~dg~v~iwd~~~~~ 281 (732)
.+. ..+..+ . .-. ...+..++|+.++..|++ ......|++|-+.+..
T Consensus 276 L~h-g~f~l~------------~----p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 276 LRH-GEFVLP------------F----PLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccc-cccccC------------C----ccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 321 111100 0 001 113889999999998888 4445569999888743
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.30 E-value=0.012 Score=47.66 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=70.7
Q ss_pred eeEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 22 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 22 V~~l~~s~---dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
|++|++.. || +.|++|+.|..||||+ ..+.+..+ .-.+.|+++.-... ..++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence 66777654 44 5899999999999997 34667776 34567888887776 68999999999999976532
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEec---CCCcEEEEEeCCCcEE
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEV---GNPHVVWSASEDGTLR 142 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~s~s~dg~i~ 142 (732)
+...+. +..++++.+.. ++-.-|++|-.+|.|-
T Consensus 74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233332 33366666543 3334688888888774
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0027 Score=62.39 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004739 107 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 186 (732)
Q Consensus 107 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (732)
+....+.+|...|.+++|+|.+..++..++.+..|+|.|+++.... .... ....
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v-------------------------ssy~-a~~~ 237 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV-------------------------SSYI-AYNQ 237 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee-------------------------ehee-ccCC
Confidence 3455677788899999999987668889999999999999987522 0111 1237
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
+++++|+-++.++|.+|-.+|.|.|||++..+
T Consensus 238 ~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 238 IWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 89999999988999999999999999998654
No 327
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.087 Score=50.45 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=113.7
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
+.|-+..|.++.|+|+.+.|++....+.-.||=..+|+.+.++.-..-.....|++..+ |++.++-=.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence 44556669999999999988888887888888778899998884433445567888877 4666666668888888776
Q ss_pred CCCCCCCCCCC-CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC-CCC-CcccceEEeeccC
Q 004739 95 RFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA-GSS-HQECRNILLDLRC 171 (732)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 171 (732)
...... .... ..++......+.....++|.|.+ +.|..+-+-.-+.|+.+......... ... +......
T Consensus 159 ~~t~~~-~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~------ 230 (316)
T COG3204 159 ADTTVI-SAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL------ 230 (316)
T ss_pred CCccEE-eccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccce------
Confidence 432111 1101 11122222225567889999966 44445555556777776543311000 000 0000000
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
....|.++.|++..+.+|+-+..++.+.-.|....
T Consensus 231 -----------f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 -----------FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred -----------EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 12267788899877888888888888888887643
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.14 E-value=0.017 Score=60.03 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=114.5
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-c------CCCcCeEEEEEec---CCCC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---ETSD 76 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~------~h~~~V~~~~~s~---~~~g 76 (732)
+.+.+...++...++|++++.|.- -++|.|..+|.+.|.|++....+..-. . .....|+++.|.. .+++
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 456667777778999999999844 489999999999999998887776531 1 1345688999973 2212
Q ss_pred ---CEEEEEECCCcEEEEEcCC-CCCCCCCCCCCCCceeeccccCceeEEEE-ecC--------------------CCcE
Q 004739 77 ---ELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQCHTRRVKKLAV-EVG--------------------NPHV 131 (732)
Q Consensus 77 ---~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~p~--------------------~~~~ 131 (732)
-.++.|...|.+.+|.+.- ..+.-. .........+.+.|..|.. +.+ -+.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 3688889999999998752 111100 0111112234455555542 211 1124
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec----CCCCCEEEEEeCCC
Q 004739 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVGGSDA 207 (732)
Q Consensus 132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~tg~~dg 207 (732)
++.++ +..++++...+.+... ..+ ........+.+- ...+..|++-..+|
T Consensus 229 vVvvS-e~~irv~~~~~~k~~~-----------K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G 282 (395)
T PF08596_consen 229 VVVVS-ESDIRVFKPPKSKGAH-----------KSF--------------DDPFLCSSASVVPTISRNGGYCLVCLFNNG 282 (395)
T ss_dssp EEEE--SSEEEEE-TT---EEE-----------EE---------------SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred EEEEc-ccceEEEeCCCCcccc-----------eee--------------ccccccceEEEEeecccCCceEEEEEECCC
Confidence 44444 5679998887665210 010 111122233332 11256788889999
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
.|++|.+...+++....... .-... .+....++++|..++..+.. .+.++.+-
T Consensus 283 ~i~i~SLP~Lkei~~~~l~~----------------~~d~~-~~~~ssis~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 283 SIRIYSLPSLKEIKSVSLPP----------------PLDSR-RLSSSSISRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp EEEEEETTT--EEEEEE-SS-------------------HH-HHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred cEEEEECCCchHhhcccCCC----------------ccccc-cccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence 99999999988776543210 00001 13456778999876666543 44444443
No 329
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.28 Score=51.80 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=46.7
Q ss_pred EEEcCCCCEEEEEeCC----------C-cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 25 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 25 l~~s~dg~~lasg~~d----------g-~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
++.+|.|-.+|....+ . .|+||+. .|+.+..+.-.+ +.|.++.|+.+ ..|+....||.++++|+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence 4556666666665433 1 4889984 466666663333 88999999987 56777789999999998
Q ss_pred C
Q 004739 94 S 94 (732)
Q Consensus 94 ~ 94 (732)
.
T Consensus 109 ~ 109 (410)
T PF04841_consen 109 F 109 (410)
T ss_pred C
Confidence 6
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.11 E-value=0.066 Score=52.05 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCcEEEEeCCCCeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCc
Q 004739 40 DTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 118 (732)
Q Consensus 40 dg~i~vWd~~~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 118 (732)
+|+|..||..+|+.+.+..... .....+.....+ ..+++++.++.|..||..+++. +..... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~----------~W~~~~-~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKV----------LWRFDL-PGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEE----------EEEEEC-SSC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCE----------EEEeec-ccc
Confidence 6899999999999998873211 122222223233 6788888999999999987532 233222 111
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec-cCCccccccCCCCCccceEEEEecCCCC
Q 004739 119 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTRP 197 (732)
Q Consensus 119 v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 197 (732)
+....... + ..++.++.++.|+.+|..+++. +|.. .... ............+. +
T Consensus 68 ~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~~--------------~W~~~~~~~------~~~~~~~~~~~~~~---~ 122 (238)
T PF13360_consen 68 ISGAPVVD-G-GRVYVGTSDGSLYALDAKTGKV--------------LWSIYLTSS------PPAGVRSSSSPAVD---G 122 (238)
T ss_dssp GGSGEEEE-T-TEEEEEETTSEEEEEETTTSCE--------------EEEEEE-SS------CTCSTB--SEEEEE---T
T ss_pred ccceeeec-c-cccccccceeeeEecccCCcce--------------eeeeccccc------cccccccccCceEe---c
Confidence 11111222 3 4555666788999999998873 3331 1110 00000111122222 4
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004739 198 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 198 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~ 277 (732)
..++++..++.|..+|+++++.+-........... ..+....+..-....++ .++.++.++.+..+|+
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS-----------PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-------------EEEETTEEEEEECCTT-EEEEECCTSSEEEEET
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc-----------ceeeecccccceEEECC-EEEEEcCCCeEEEEEC
Confidence 58888888999999999999875544321100000 00000012222223344 7788887875444498
Q ss_pred CCCC
Q 004739 278 NHAG 281 (732)
Q Consensus 278 ~~~~ 281 (732)
.+++
T Consensus 191 ~tg~ 194 (238)
T PF13360_consen 191 ATGE 194 (238)
T ss_dssp TTTE
T ss_pred CCCC
Confidence 8864
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.045 Score=44.45 Aligned_cols=105 Identities=23% Similarity=0.197 Sum_probs=67.9
Q ss_pred eEEEEEec---CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004739 65 VFCTKFVP---ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 141 (732)
Q Consensus 65 V~~~~~s~---~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 141 (732)
|+++++.. ++ .+.|+.|+.|..|++|+=.. .+..+.. .+.|+++.-.. . ..|+.+-.+|+|
T Consensus 2 V~al~~~d~d~dg-~~eLlvGs~D~~IRvf~~~e------------~~~Ei~e-~~~v~~L~~~~-~-~~F~Y~l~NGTV 65 (111)
T PF14783_consen 2 VTALCLFDFDGDG-ENELLVGSDDFEIRVFKGDE------------IVAEITE-TDKVTSLCSLG-G-GRFAYALANGTV 65 (111)
T ss_pred eeEEEEEecCCCC-cceEEEecCCcEEEEEeCCc------------EEEEEec-ccceEEEEEcC-C-CEEEEEecCCEE
Confidence 56666654 32 26899999999999998662 2555553 56777777665 3 678899999999
Q ss_pred EEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 142 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
-+|+-... +|..++.+ +...+....++.++-.-|++|-.+|.|-
T Consensus 66 GvY~~~~R----------------lWRiKSK~---------~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQR----------------LWRIKSKN---------QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcce----------------eeeeccCC---------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 99975332 33332221 1112333334445455799999999874
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.039 Score=60.03 Aligned_cols=170 Identities=18% Similarity=0.277 Sum_probs=104.2
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc---
Q 004739 64 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--- 140 (732)
Q Consensus 64 ~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~--- 140 (732)
.|.| |++. +..++.|+.+|.|.+.+-.- ..++.++.+...+....+.-++.++|++.+.|+.
T Consensus 27 ~isc--~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 27 AISC--CSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred ceeE--EcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence 4444 4566 47899999999988876542 2246677777664344444445578888877654
Q ss_pred --EEEEECCCCCCCCCCCCCCcccc--eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 141 --LRQHDFRQGSSCPPAGSSHQECR--NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 141 --i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
|++|+++..+... .+.|. ..++... .+....++.+++.+.+ -..+|+|-.+|.|..+.=+-
T Consensus 92 ~llkiw~lek~~~n~-----sP~c~~~~ri~~~~---------np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNN-----SPQCLYEHRIFTIK---------NPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEecccccCCCC-----CcceeeeeeeeccC---------CCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcc
Confidence 8999998765211 02222 1111111 1234557888899888 78999999999999985332
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.+.... .... ......+|+++++..+++.++-...-..|.+|.+...
T Consensus 157 ~RDrgs---------------r~~~--~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 157 LRDRGS---------------RQDY--SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred hhcccc---------------ceee--eccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 111100 0000 1122337999999999987333444458899998843
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.98 E-value=0.047 Score=58.64 Aligned_cols=165 Identities=8% Similarity=-0.007 Sum_probs=94.6
Q ss_pred EcCCCCEEEEE-eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---------------------
Q 004739 27 WNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--------------------- 84 (732)
Q Consensus 27 ~s~dg~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~--------------------- 84 (732)
++|||+.+... -..+.+.+.|..+.+...++.. .+....++++|+ |.++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEEE
Confidence 44566655332 2356778888888887777632 224456777887 466655541
Q ss_pred -------------------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEE
Q 004739 85 -------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD 145 (732)
Q Consensus 85 -------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd 145 (732)
+++|.+.|..+..... .. +.....-......+.++|++..+++++..+.+|.|.|
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 1335555544310000 01 1222223556788999998766666677799999999
Q ss_pred CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 146 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
+.+.+...... .+....+. ....-.. .-...+|.++ |+.+.+-.-|..|..|++..
T Consensus 350 v~k~k~~~~~~---~~~~~~vv----------aevevGl-GPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGK---IKPRDAVV----------AEPELGL-GPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Chhhhhhhhcc---CCccceEE----------EeeccCC-CcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 98866321100 01111111 0011111 2234678888 77888888999999999876
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.15 Score=47.74 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEE-EEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT-KFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~-~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
|++++.|...|.+++.+.++|.....+. -.+.|.+- ...++ +.++..|+.|++...-|.++
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~--~~~~vk~~a~~d~~--~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFV--ILETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeee--ehhhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence 5678899999999999999998887773 22333332 23455 47999999999999988886
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.88 E-value=0.13 Score=58.50 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=122.4
Q ss_pred CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcE
Q 004739 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL 141 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i 141 (732)
...|.++.|..+. +.++.+...|.|.+-|..+.. +.....-...|.+++|+|+. ..++-.+..+++
T Consensus 68 d~~i~s~~fl~d~--~~i~v~~~~G~iilvd~et~~-----------~eivg~vd~GI~aaswS~De-e~l~liT~~~tl 133 (1265)
T KOG1920|consen 68 DDEIVSVQFLADT--NSICVITALGDIILVDPETLE-----------LEIVGNVDNGISAASWSPDE-ELLALITGRQTL 133 (1265)
T ss_pred CcceEEEEEeccc--ceEEEEecCCcEEEEcccccc-----------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEE
Confidence 3689999999884 778888889999999887632 23333346789999999955 788777777777
Q ss_pred EEEECCCCCCCCCCCC-----CCcccceEEeeccC-------Ccccc----ccCC--C--CCccceEEEEecCCCCCEEE
Q 004739 142 RQHDFRQGSSCPPAGS-----SHQECRNILLDLRC-------GAKRS----LADP--P--KQTLSLKSCDISSTRPHLLL 201 (732)
Q Consensus 142 ~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~----~~~~--~--~~~~~v~~i~~~~~~~~~l~ 201 (732)
.+-. .+-.++..... ........-|+-+. |.... .... . .....=+++.|-.| |.+++
T Consensus 134 l~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-g~~fA 211 (1265)
T KOG1920|consen 134 LFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-GEYFA 211 (1265)
T ss_pred EEEe-ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-CcEEE
Confidence 5533 22221110000 00001111111110 00000 0000 0 01112246889888 77888
Q ss_pred EEe----CC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec---CCeEE
Q 004739 202 VGG----SD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVY 273 (732)
Q Consensus 202 tg~----~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~---dg~v~ 273 (732)
+.. .+ ..|+|||.. +. +..... ....--.+++|-|.|..+++-.. |+.|.
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~-Lns~se--------------------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GA-LNSTSE--------------------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred EEEEeccCCceeEEEeccc-ch-hhcccC--------------------cccccccceeecCCCCeEeeeeecCCCCcEE
Confidence 732 23 799999987 32 211100 00112356999999998877643 56788
Q ss_pred EEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004739 274 LMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l 335 (732)
+|.-+.-..-. |.-.....+.++..++|..++..++.-.+......+++
T Consensus 270 ffErNGL~hg~-------------f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~l 318 (1265)
T KOG1920|consen 270 FFERNGLRHGE-------------FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQL 318 (1265)
T ss_pred EEecCCccccc-------------cccCCcccccchheeeecCCCCceeeeecccccceEEE
Confidence 88766522110 11111122223677788888888873333444444677
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.024 Score=61.17 Aligned_cols=72 Identities=13% Similarity=0.249 Sum_probs=61.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
.+++++|+|..-.|+.|-.-|.+.+|...+.+. +++...|+.+|..+.|||+ |..++|+..=|.|.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence 355699999988899998899999999766544 4444789999999999999 69999999999999998773
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.58 E-value=0.19 Score=56.36 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=92.2
Q ss_pred CEEEEE-eCCCcEEEEeCCCCeeEEEEccCCC-cCeEEEEEecCCC-----CCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 32 SLLISG-SDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 32 ~~lasg-~~dg~i~vWd~~~~~~~~~~~~~h~-~~V~~~~~s~~~~-----g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
+.|+.. .....|+-.|+++|+.+..+ ..|. .+|..+ .|+.. ....+.|-.+..+..||++....+..
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW-~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v--- 567 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEW-KVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV--- 567 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEe-ecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCcee---
Confidence 344433 35578899999999999999 4444 335554 44310 23456677889999999996432211
Q ss_pred CCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCc
Q 004739 105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 184 (732)
Q Consensus 105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (732)
....+.+ .......|++-+. ..+||.|+.+|.||+||- .+.. .....++-.
T Consensus 568 -~~~~k~Y-~~~~~Fs~~aTt~--~G~iavgs~~G~IRLyd~-~g~~------------------------AKT~lp~lG 618 (794)
T PF08553_consen 568 -DSQSKQY-SSKNNFSCFATTE--DGYIAVGSNKGDIRLYDR-LGKR------------------------AKTALPGLG 618 (794)
T ss_pred -ecccccc-ccCCCceEEEecC--CceEEEEeCCCcEEeecc-cchh------------------------hhhcCCCCC
Confidence 0001111 2344566776654 358999999999999993 2221 111223445
Q ss_pred cceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
.+|.+|..+.| |+++++.+ +..|.+++..
T Consensus 619 ~pI~~iDvt~D-GkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 619 DPIIGIDVTAD-GKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCeeEEEecCC-CcEEEEee-cceEEEEEEe
Confidence 69999999999 66666554 5678888863
No 338
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.58 E-value=0.15 Score=53.91 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=100.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEccCCCc------CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC
Q 004739 33 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 106 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~------~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 106 (732)
.++.++.++.+...|..+|+.+......... ....+.-+|--.+..++.++.+|.+...|+.+++.
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-------- 278 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-------- 278 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--------
Confidence 4666777889999999998876654211110 01111122210125677778899999999987532
Q ss_pred CCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004739 107 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 186 (732)
Q Consensus 107 ~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (732)
+.... ......+... + ..++.++.+|.+..+|..+++. +|...... . ..
T Consensus 279 --~W~~~--~~~~~~~~~~--~-~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~~---------~-~~ 327 (394)
T PRK11138 279 --VWKRE--YGSVNDFAVD--G-GRIYLVDQNDRVYALDTRGGVE--------------LWSQSDLL---------H-RL 327 (394)
T ss_pred --EEeec--CCCccCcEEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEcccccC---------C-Cc
Confidence 11111 1111122222 3 4566777899999999988762 22211000 0 01
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004739 187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 266 (732)
Q Consensus 187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~ 266 (732)
..+.... +..++.++.+|.|++.|..+++.+.+... .... ......+ .+..|+++
T Consensus 328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-------------------~~~~-~~s~P~~--~~~~l~v~ 382 (394)
T PRK11138 328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV-------------------DSSG-FLSEPVV--ADDKLLIQ 382 (394)
T ss_pred ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc-------------------CCCc-ceeCCEE--ECCEEEEE
Confidence 1111122 34788899999999999998875543211 0000 0111112 24479999
Q ss_pred ecCCeEEEEEC
Q 004739 267 YSGEHVYLMDV 277 (732)
Q Consensus 267 ~~dg~v~iwd~ 277 (732)
+.||.|+.++.
T Consensus 383 t~~G~l~~~~~ 393 (394)
T PRK11138 383 ARDGTVYAITR 393 (394)
T ss_pred eCCceEEEEeC
Confidence 99999998864
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.51 E-value=0.095 Score=58.61 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=111.5
Q ss_pred hhhccccEeeeccCCc-eeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC--eeEEEEc--cCCCcCeEEEEEecCCC
Q 004739 6 VRRLSQERELEGHQGC-VNAISWNS-----KGSLLISGSDDTHINVWSYSSR--KLLHSIE--TGHSANVFCTKFVPETS 75 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~lasg~~dg~i~vWd~~~~--~~~~~~~--~~h~~~V~~~~~s~~~~ 75 (732)
+.+++.+..++.|... |..++=.. +....+.|-.++.+..||++-. +++..-. ........|++-+.+
T Consensus 511 Le~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-- 588 (794)
T PF08553_consen 511 LERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-- 588 (794)
T ss_pred cCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC--
Confidence 4567888889888755 55554321 2334566778889999998743 2332110 123455677777766
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCC--
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ--GSS-- 151 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~--~~~-- 151 (732)
.+||.|+.+|.||+||--. . .....+.+...+|.+|..+.+| ++++..+ +..|.+++..- ++.
T Consensus 589 -G~iavgs~~G~IRLyd~~g-~---------~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t~~~~g~~~g 655 (794)
T PF08553_consen 589 -GYIAVGSNKGDIRLYDRLG-K---------RAKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDTLIKDGKNSG 655 (794)
T ss_pred -ceEEEEeCCCcEEeecccc-h---------hhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEEeeecCCccC
Confidence 5899999999999998431 1 1134556778999999999966 6554433 46888988642 211
Q ss_pred -CCC--CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC--CCCCEEEEEeCCCeEEEEECCCC
Q 004739 152 -CPP--AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 152 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
... .+.....+.-..+.+...+...+....+.....+...|+. +.....++.+....+.+|+++.-
T Consensus 656 ~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV 726 (794)
T PF08553_consen 656 KLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKV 726 (794)
T ss_pred ccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHH
Confidence 111 1111111122222222222212211112333445556653 11234445556778999998754
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.014 Score=61.09 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=74.4
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeE-EEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~-~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++ .-|...++ +++|.|+ |+.|+.|-.||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCCC
Confidence 4567889999999999999999999999988 8888888 44666666 9999999 6999999999999999999753
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEec
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEV 126 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 126 (732)
... .....-...|.++-|.+
T Consensus 96 ~l~---------~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLV---------SFLFSVETDISKGIWDR 115 (665)
T ss_pred cee---------ccccccccchheeeccc
Confidence 311 11122345666676754
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.43 E-value=0.39 Score=50.07 Aligned_cols=116 Identities=11% Similarity=0.147 Sum_probs=73.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE------------------------------------------EEEc
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL------------------------------------------HSIE 58 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~------------------------------------------~~~~ 58 (732)
.|+.+.|+++..-|++|...|.|.||.+...+.- ..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999888999999999999975321100 0111
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEec----CC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEV----GN 128 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p----~~ 128 (732)
....++|++++.|.- .+++.|..+|.+.|.|++.+.-- ....+. .....++++.|.. ++
T Consensus 83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI--------~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVI--------YNENIRESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEE--------EEEEGGG--T-SS----EEEEEEEEEE-TTS
T ss_pred eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEE--------eeccccccccccccccCeeEEEEEEEecCCC
Confidence 234689999999866 59999999999999999853210 001111 1234677888862 12
Q ss_pred C---cEEEEEeCCCcEEEEECC
Q 004739 129 P---HVVWSASEDGTLRQHDFR 147 (732)
Q Consensus 129 ~---~~l~s~s~dg~i~vwd~~ 147 (732)
+ -+++.|...|.+.+|.+.
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEe
Confidence 1 367788999999999875
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.42 E-value=0.17 Score=53.31 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=74.7
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEe---CC-CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~---~d-g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.+.+..-...+..-+|+|+++.++--+ .. ..+.++|+.+++..... ...+.-..-+|+|++ ..++++...||.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG-~~l~f~~~rdg~ 261 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDG-SKLAFSSSRDGS 261 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCC-CEEEEEECCCCC
Confidence 344444556677778999998766542 22 45999999988765554 233444567899995 245566667777
Q ss_pred EEEE--EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEE--EECCCC
Q 004739 88 VRLF--NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ--HDFRQG 149 (732)
Q Consensus 88 i~vw--d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~v--wd~~~~ 149 (732)
..|| |+.... +..+..-.+.-+.=.|+|++..++++....|.-.| +++...
T Consensus 262 ~~iy~~dl~~~~-----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 262 PDIYLMDLDGKN-----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred ccEEEEcCCCCc-----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 5555 555432 12222222222356789988666666666666444 454444
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.36 E-value=0.08 Score=54.93 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=97.6
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 28 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 28 s~dg~~lasg---------~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
|||+++++.. +..+.+.|+|+.+++..... .....+....|+|+ |+.++-.. ++.|.++++.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--~~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--PPPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--CCccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence 6788877763 22467899999997665543 22567899999999 57887765 67899998875422
Q ss_pred CCCCCCCCCCceeeccc---------cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCC------------CCCCC
Q 004739 99 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC------------PPAGS 157 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~------------~~~~~ 157 (732)
..+.... .-..+.|- -+.-..+-|+|++..++..--.+..|..+.+...... ++...
T Consensus 76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred EEecccc--ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 1110000 00001111 1223568899977444444445555555543222111 11222
Q ss_pred CCcccceEEeeccCCccccccCC---CCCccceEEEEecCCCCCEEEEE--eCC---CeEEEEECCCCC
Q 004739 158 SHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLP 218 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~tg--~~d---g~v~iwd~~~~~ 218 (732)
........++++.++....+..+ ......+..+.|.++ +..|+.. ..+ ..+.+.|..++.
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCc
Confidence 22444556677877765444433 344668899999998 5534333 222 236666776643
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.91 Score=47.53 Aligned_cols=203 Identities=14% Similarity=0.132 Sum_probs=126.0
Q ss_pred eEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCC
Q 004739 23 NAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSG 98 (732)
Q Consensus 23 ~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~ 98 (732)
..+++++++. ..++...++.|.+.|..+.+.......+. ....++++|+. +.+..+.. ++++.+.|..+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeE
Confidence 4677888887 44455556899999988888887774444 56789999994 55555443 67788888775321
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
+.....-..+ ..+++.|++...+++-..++.|.+.|........ . .. .
T Consensus 153 ----------~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---------------~~-----~ 200 (381)
T COG3391 153 ----------TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---------------SV-----G 200 (381)
T ss_pred ----------EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---------------cc-----c
Confidence 2332221233 8899999775566666688999999966554210 0 00 0
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCC--CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
........-..+.++|++.+..++-..+ +.+...|..+......-. ..... ....+.+
T Consensus 201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-------------------~~~~~-~~~~v~~ 260 (381)
T COG3391 201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-------------------PVGSG-APRGVAV 260 (381)
T ss_pred cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-------------------ccccC-CCCceeE
Confidence 0000111335678889843344443333 588889888764332100 00111 2445899
Q ss_pred cCCCCEEEEEec-CCeEEEEECCCCC
Q 004739 257 SPNGEEVLLSYS-GEHVYLMDVNHAG 281 (732)
Q Consensus 257 sp~g~~l~~~~~-dg~v~iwd~~~~~ 281 (732)
+|+|+.+.+... .+.|.+.|..+..
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 999999988855 5899999888743
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.036 Score=58.93 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=81.1
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE
Q 004739 123 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV 202 (732)
Q Consensus 123 ~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t 202 (732)
++.. ...+++.|+.-|.+++|+-..++...... .+....+..+..+++ .+++|.
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------~~~~~~~~~~~vs~~-e~lvAa 93 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------EGATGITCVRSVSSV-EYLVAA 93 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhcccc------------------------cCccceEEEEEecch-hHhhhh
Confidence 3444 44899999999999999987766331111 112335566777887 678899
Q ss_pred EeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 203 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 203 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|+..|.|.++-++...+-.. .++.+.+ ..| ...|++++|++++..+++|...|+|.+-.+.+
T Consensus 94 gt~~g~V~v~ql~~~~p~~~-----------~~~t~~d---~~~-~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDL-----------DYVTPCD---KSH-KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcc-----------eeecccc---ccC-CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 99999999998876432211 1111111 113 33699999999999999999999999988877
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.011 Score=61.74 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=64.8
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEE-EEeecCCCCeEEEecCCCcEEEEcCCCCCCcccc
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN-CVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS 676 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~-~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~ 676 (732)
|+|--..+|.+-.+|.|-+.-+. .+.+.++.-|...|+ +++|-|||++||.|=.||+|++-|+.++..+..+
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 69999999999999999888877 777888887877777 9999999999999999999999999999988763
No 347
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=0.0049 Score=66.59 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=77.0
Q ss_pred cccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecC-CC
Q 004739 582 IDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGI-DN 660 (732)
Q Consensus 582 ~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~-D~ 660 (732)
++..++|..|...-+|+. ||.+.++|+.|+..|.|+++++.+|.......+|...||-|.-+-||.++++.+. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~a----fs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIA----FSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred cccchhhhccccceeeEE----eecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence 567788888887766666 7999999999999999999999999999999999999999999999985555544 33
Q ss_pred -cEEEEcCC-CCCCccccCC
Q 004739 661 -TIKIWTPS-ASVPSIVSGG 678 (732)
Q Consensus 661 -~i~vW~~~-~~~~~~~~~g 678 (732)
...+|+.. ++.+..+|.+
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE 1186 (1516)
T ss_pred chHHHhccccccCccccccc
Confidence 47899987 4445556654
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.16 E-value=0.35 Score=52.26 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 265 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~ 265 (732)
....+.++||+...++++..+++|.|.|+.+.+.... ....+..++..-.+ . +......+|.++|....+
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vvaeve-----v---GlGPLHTaFDg~G~ayts 391 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVAEPE-----L---GLGPLHTAFDGRGNAYTT 391 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEEeec-----c---CCCcceEEECCCCCEEEe
Confidence 4578999999544555556689999999988654211 11111111111100 1 112345789999987777
Q ss_pred EecCCeEEEEECCC
Q 004739 266 SYSGEHVYLMDVNH 279 (732)
Q Consensus 266 ~~~dg~v~iwd~~~ 279 (732)
..-|.+|-.||+..
T Consensus 392 lf~dsqv~kwn~~~ 405 (635)
T PRK02888 392 LFLDSQIVKWNIEA 405 (635)
T ss_pred EeecceeEEEehHH
Confidence 77799999999987
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.16 E-value=0.99 Score=48.10 Aligned_cols=117 Identities=13% Similarity=0.117 Sum_probs=67.8
Q ss_pred ceeEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC---------
Q 004739 21 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--------- 86 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg-~~d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--------- 86 (732)
.+..+.+||||++||-+ +.. ..|++.|+.+++.+...... ..-..+.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~--~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDG--KGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTS--SEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCC--CEEEEEEeCcccccccCCC
Confidence 33467899999988865 333 35999999999876543121 112349999994 5555444332
Q ss_pred --cEEEEEcCCCCCCCCCCCCCCCceeeccccC--ceeEEEEecCCCcEEEEEeCCC---cEEEEECCCC
Q 004739 87 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 149 (732)
Q Consensus 87 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~ 149 (732)
.|+.|.+.+..... ...+.+... ....+..++++..+++...... .+.+.|+...
T Consensus 201 ~~~v~~~~~gt~~~~d--------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSED--------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG---------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhC--------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 27777877643221 123332222 2567888886644444444433 4777787764
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.13 E-value=0.019 Score=38.80 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=30.5
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL 54 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~ 54 (732)
...|.+++|+|...+||.|..+|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999998 55543
No 351
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.0093 Score=54.58 Aligned_cols=108 Identities=11% Similarity=0.040 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004739 128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 207 (732)
Q Consensus 128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg 207 (732)
....++.|+.+|.|.+|......... +. +. .....|.++--.-+.+.+..+++.||
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~--------------d~-------~~---s~~e~i~~~Ip~~~~~~~~c~~~~dg 124 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHS--------------DR-------VC---SGEESIDLGIPNGRDSSLGCVGAQDG 124 (238)
T ss_pred cCceEEeecccceEEEecCCccchHH--------------Hh-------hh---cccccceeccccccccceeEEeccCC
Confidence 34678899999999999886322110 00 00 00112222222222255888999999
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE--ecCCeEEEEECCC
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS--YSGEHVYLMDVNH 279 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~--~~dg~v~iwd~~~ 279 (732)
.||.|++.-.+.+... .+|...++..+.....++.|..+ +.|..++.|++..
T Consensus 125 ~ir~~n~~p~k~~g~~--------------------g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 125 RIRACNIKPNKVLGYV--------------------GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeeeccccCceeeee--------------------ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999998765433211 22221345555555666666666 6677777777765
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.93 E-value=0.37 Score=46.44 Aligned_cols=182 Identities=16% Similarity=0.128 Sum_probs=87.3
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEe
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s 136 (732)
.+-...+.++.|.|+. +.+++.....+.|...+.. ++. +..+ .+ ....-.|++.. ++.++++--
T Consensus 18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~---G~v--------lr~i~l~g-~~D~EgI~y~g-~~~~vl~~E 83 (248)
T PF06977_consen 18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLD---GKV--------LRRIPLDG-FGDYEGITYLG-NGRYVLSEE 83 (248)
T ss_dssp TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-----E--------EEEEE-SS--SSEEEEEE-S-TTEEEEEET
T ss_pred CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCC---CCE--------EEEEeCCC-CCCceeEEEEC-CCEEEEEEc
Confidence 4555669999999985 4566666677777777764 222 3333 33 35678888876 436666555
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.++.+.++++........ . .... ...+.....+...+-.++|+|.+ +.|+++-...-.++|.++.
T Consensus 84 r~~~L~~~~~~~~~~~~~-----~---~~~~------~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLD-----R---ADVQ------KISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp TTTEEEEEEE----TT-------E---EEEE------EEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEES
T ss_pred CCCcEEEEEEeccccccc-----h---hhce------EEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEcc
Confidence 688999999855331100 0 0000 00112223345578999999984 5555555555566776654
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~ 279 (732)
...- ..+.................+.+++++|... +++.+..+..|.++|...
T Consensus 149 ~~~~----------~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 149 FPGG----------FDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp TT-S----------S--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred ccCc----------cceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 1100 0000000000000000111378899999655 455555578888888443
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.85 E-value=0.34 Score=49.54 Aligned_cols=186 Identities=14% Similarity=0.134 Sum_probs=107.1
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEec---CC--CCCEEEEEEC---------C-CcEEEEEcCCCCCCCCCCCC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVP---ET--SDELVVSGAG---------D-AEVRLFNLSRFSGRGLDDNA 105 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~---~~--~g~~l~s~~~---------d-g~i~vwd~~~~~~~~~~~~~ 105 (732)
..|++.|..+.+.+..+.-.....+++++... +. ...+|+.|.. . |.|.++++....... .+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~---~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN---FK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc---eE
Confidence 35899998888877766434445566655443 10 1267777743 2 889999998630000 00
Q ss_pred CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCcc
Q 004739 106 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 185 (732)
Q Consensus 106 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (732)
.+.+.. ....++|+++.-. ++. |+.+. ++.|.+|++...+.. . ...... ...
T Consensus 79 l~~i~~-~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l-----------~-----------~~~~~~-~~~ 130 (321)
T PF03178_consen 79 LKLIHS-TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTL-----------L-----------KKAFYD-SPF 130 (321)
T ss_dssp EEEEEE-EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSE-----------E-----------EEEEE--BSS
T ss_pred EEEEEE-EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccc-----------h-----------hhheec-ceE
Confidence 111222 2357889998876 334 43433 478999999877611 0 000000 112
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL 264 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~ 264 (732)
.+.++... ++++++|.....+.++..+... .+..+. ......+++++.|-++++.++
T Consensus 131 ~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------------------~d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 131 YITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVA-------------------RDYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp SEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEE-------------------EESS-BEEEEEEEE-SSSEEE
T ss_pred EEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEE-------------------ecCCCccEEEEEEecCCcEEE
Confidence 56666665 4589999888888887544311 111110 001122589999987778899
Q ss_pred EEecCCeEEEEECCC
Q 004739 265 LSYSGEHVYLMDVNH 279 (732)
Q Consensus 265 ~~~~dg~v~iwd~~~ 279 (732)
++..+|.+.++....
T Consensus 189 ~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEETTSEEEEEEE-S
T ss_pred EEcCCCeEEEEEECC
Confidence 999999999998864
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.80 E-value=0.91 Score=46.40 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=88.4
Q ss_pred CCEEEEEeC---------C-CcEEEEeCCCC-----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 31 GSLLISGSD---------D-THINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 31 g~~lasg~~---------d-g~i~vWd~~~~-----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
..+|+.|.. . |.|.++++... +..........++|++++--.+ . |+.+. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~---~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG---R-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT---E-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC---E-EEEee-cCEEEEEEccC
Confidence 467887743 2 88999999884 2222222356788999987732 4 44443 58899999986
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
.+. . .....+. ....+.++... + ++++.|.....+.++........ ..+.
T Consensus 117 ~~~-l------~~~~~~~-~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~-----------l~~v-------- 166 (321)
T PF03178_consen 117 SKT-L------LKKAFYD-SPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK-----------LILV-------- 166 (321)
T ss_dssp TSS-E------EEEEEE--BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE------------EEEE--------
T ss_pred ccc-c------hhhheec-ceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCE-----------EEEE--------
Confidence 430 0 1122222 23366666665 3 58888888788887755442100 0000
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.. ......++++.|-+++ +.++++..+|.+.++....
T Consensus 167 --a~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 167 --AR-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp --EE-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred --Ee-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence 00 0123368899998774 6999999999999998763
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.72 E-value=1.5 Score=45.40 Aligned_cols=70 Identities=10% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC----------------CcCeEEEEEecCCCCCEEEEE
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH----------------SANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h----------------~~~V~~~~~s~~~~g~~l~s~ 82 (732)
...+....|||+|+.+|-.. ++.|.+++..+++..+....+- -+.-..+-|||++ ++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~--~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS--KYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS--SEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCC--CEEEEE
Confidence 56789999999999999885 5789999988775544332220 1123568899995 777665
Q ss_pred EC-CCcEEEE
Q 004739 83 AG-DAEVRLF 91 (732)
Q Consensus 83 ~~-dg~i~vw 91 (732)
.. +..|+.+
T Consensus 119 ~~d~~~v~~~ 128 (353)
T PF00930_consen 119 RFDEREVPEY 128 (353)
T ss_dssp EEE-TTS-EE
T ss_pred EECCcCCceE
Confidence 43 3444443
No 356
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.14 Score=57.37 Aligned_cols=75 Identities=31% Similarity=0.532 Sum_probs=57.4
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecC-CCCCEEEEEECCCcEEEEEcCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~-~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
-.++|++++|+.+|+.++.|-.+|.|.+||+.+++.++.+ ..|..+++++-++-- +.+..++++..-|. +|.+.-
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 3689999999999999999999999999999999988888 566666655544321 11256888777775 676653
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.59 E-value=0.35 Score=51.14 Aligned_cols=144 Identities=18% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc
Q 004739 61 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT 140 (732)
Q Consensus 61 h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~ 140 (732)
.......+.++|+ |++++. +.||.-.|+.... ... ...+.-..+.|.+ . +.+|+-...+.
T Consensus 31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~ 90 (443)
T PF04053_consen 31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSST 90 (443)
T ss_dssp -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCe
Confidence 3445789999998 477777 4578888887332 111 1234556788988 3 45777777888
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~ 220 (732)
|.++.--+.+.. ..+. .+ ..+..+-. |.+|...+.+ .|.+||..+.+.+
T Consensus 91 I~I~kn~~~~~~----------------------k~i~-~~---~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i 139 (443)
T PF04053_consen 91 IKIYKNFKNEVV----------------------KSIK-LP---FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLI 139 (443)
T ss_dssp EEEEETTEE-TT----------------------------S---S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EE
T ss_pred EEEEEcCccccc----------------------eEEc-CC---cccceEEc----CcEEEEECCC-CEEEEEhhHccee
Confidence 999632222210 0000 00 02222221 5567666654 8999999998776
Q ss_pred cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.++. .. +|..+.|+++|++++..+.+ .++|++.+.
T Consensus 140 ~~i~----------------------v~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 140 RRID----------------------VS-AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEES----------------------S--E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEe----------------------cC-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 6542 11 37899999999998888765 777776544
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.57 E-value=2.8 Score=44.25 Aligned_cols=34 Identities=3% Similarity=-0.052 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
.++..|+.||+ ++++|.-..+|.+.+.+..-.+.
T Consensus 217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred CCeEEEEECCC-CCEEEEEECCCCEEEEECcccce
Confidence 37899999999 78999999999999987654433
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.55 E-value=0.015 Score=62.62 Aligned_cols=76 Identities=11% Similarity=0.027 Sum_probs=66.1
Q ss_pred eeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcc
Q 004739 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSI 674 (732)
Q Consensus 598 i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~ 674 (732)
..++| |.|..-.||+|=.-|-+.+|...+.+.......|...|..|.|||+|..|+|+..=|.|.+|....-..++
T Consensus 62 atSLC-WHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 62 ATSLC-WHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred hhhhc-cChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc
Confidence 33455 59988899999999999999999888877788899999999999999999999999999999988544443
No 360
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.49 E-value=0.64 Score=49.02 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=93.9
Q ss_pred CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE--CC--CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec
Q 004739 51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GD--AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 126 (732)
Q Consensus 51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~--~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 126 (732)
+.....+ ..-...+..-+|+|++ ..++... .. ..+.++++.++.... +..+.++ -..-+|+|
T Consensus 182 g~~~~~l-~~~~~~~~~p~ws~~~--~~~~y~~f~~~~~~~i~~~~l~~g~~~~--------i~~~~g~---~~~P~fsp 247 (425)
T COG0823 182 GYNQQKL-TDSGSLILTPAWSPDG--KKLAYVSFELGGCPRIYYLDLNTGKRPV--------ILNFNGN---NGAPAFSP 247 (425)
T ss_pred CcceeEe-cccCcceeccccCcCC--CceEEEEEecCCCceEEEEeccCCccce--------eeccCCc---cCCccCCC
Confidence 4444444 3344566777899985 4443332 22 358899998765422 3344443 34568999
Q ss_pred CCCcEEEEEeCCCc--EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe
Q 004739 127 GNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG 204 (732)
Q Consensus 127 ~~~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~ 204 (732)
++..++++...||. |.+.|+...... .+....+ .-..=.|+|++..+.++.+
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~-----------------------~Lt~~~g---i~~~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLP-----------------------RLTNGFG---INTSPSWSPDGSKIVFTSD 301 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcce-----------------------ecccCCc---cccCccCCCCCCEEEEEeC
Confidence 88777888888886 455566655421 0111111 1124568999554455555
Q ss_pred CCCe--EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-Ce--EEEEECCC
Q 004739 205 SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH--VYLMDVNH 279 (732)
Q Consensus 205 ~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-g~--v~iwd~~~ 279 (732)
..|. |.++|+..... ..+. ..+.. -..-.|+|+|++|+..+.. |. |.+.|+.+
T Consensus 302 r~G~p~I~~~~~~g~~~-~riT------------------~~~~~---~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 302 RGGRPQIYLYDLEGSQV-TRLT------------------FSGGG---NSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCcceEEECCCCCce-eEee------------------ccCCC---CcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 5665 44445554332 1110 01111 1156889999998887753 44 66666666
Q ss_pred CC
Q 004739 280 AG 281 (732)
Q Consensus 280 ~~ 281 (732)
+.
T Consensus 360 ~~ 361 (425)
T COG0823 360 GG 361 (425)
T ss_pred CC
Confidence 44
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.44 E-value=0.018 Score=52.74 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=58.5
Q ss_pred CCCCEEEEecCCCcEEEEEcCcccEEEEEecCc-ccEEEEeecCCCCeEEEe--cCCCcEEEEcCCCCCCcc
Q 004739 606 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDE-AVVNCVQCHPFDCVVATS--GIDNTIKIWTPSASVPSI 674 (732)
Q Consensus 606 ~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~-~~V~~v~fsp~~~~l~S~--s~D~~i~vW~~~~~~~~~ 674 (732)
.++.+..+|+.||.|+.|+++-.+.+...-.|+ ..+..+..+..+..|+++ |.|..++.|++..-....
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~ 183 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDES 183 (238)
T ss_pred cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccC
Confidence 456688999999999999999999999888898 778888888888888888 889999999887666543
No 362
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.30 E-value=0.48 Score=53.26 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=61.6
Q ss_pred CccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC--
Q 004739 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-- 259 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-- 259 (732)
-...|..+.++|+ |.+++..|..| |.|-.+.. ......+......-.|-.......+... .....|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~-g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~-~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPT-GSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS-NSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCC-CCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccC-CCCceEEEEEEcCCCC
Confidence 4468999999999 78888888766 44544432 1111111111111123222212222212 22336999999996
Q ss_pred -CCEEEEEecCCeEEEEECCCCCCcceeee
Q 004739 260 -GEEVLLSYSGEHVYLMDVNHAGGRAMRYT 288 (732)
Q Consensus 260 -g~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 288 (732)
+.+|++-+.|+++|+||+.....+.....
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 58999999999999999987665554443
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.24 E-value=1.4 Score=43.97 Aligned_cols=219 Identities=12% Similarity=0.122 Sum_probs=115.1
Q ss_pred eEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 23 NAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 23 ~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
..++++.||+++.... --..|.|-|+..++.+.++. -.+ |.-.-|.+ ...+.+-+.||.+.-..+... ++.
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG---C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~-Gk~ 170 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--TPG---CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD-GKE 170 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--GTS---EEEEEEEE-TTEEEEEETTSCEEEEEETST-SSE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--CCC---EEEEEecC-CCceEEEecCCceEEEEECCC-CCE
Confidence 3468889999887764 34579999999999998883 222 22223433 256888889999999998853 221
Q ss_pred CCCCCCCCceeeccccCcee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 101 LDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 101 ~~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. ......+....+++. .-++...+ ..++--+.+|.|+--|+...... ...-|.+.+...+.-
T Consensus 171 ~----~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~----------~~~~~~~~t~~e~~~-- 233 (342)
T PF06433_consen 171 A----QKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAK----------FGKPWSLLTDAEKAD-- 233 (342)
T ss_dssp E----EEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEE----------EEEEEESS-HHHHHT--
T ss_pred e----EeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCccc----------ccCcccccCcccccc--
Confidence 1 000111111122221 22333323 34444678888988888665411 011111111000000
Q ss_pred CCCCccceEEEEecCCCCCEEEEE--e-----CCC--eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVG--G-----SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg--~-----~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
.=..+...-+++++..+++++.- + .|+ .|-++|+.+.+.+..+.. ..+
T Consensus 234 -~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----------------------~~~ 290 (342)
T PF06433_consen 234 -GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----------------------EHP 290 (342)
T ss_dssp -TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----------------------EEE
T ss_pred -CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----------------------CCc
Confidence 00111223456666533333321 1 122 377778888876655421 114
Q ss_pred EEEEEEcCCCC-EEEEEe-cCCeEEEEECCCCCCcceeee
Q 004739 251 LTHVTFSPNGE-EVLLSY-SGEHVYLMDVNHAGGRAMRYT 288 (732)
Q Consensus 251 i~~l~~sp~g~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~ 288 (732)
+.+|+.+.+.+ +|++.+ .++.+.+||..+++.......
T Consensus 291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 77899998776 565554 479999999999876554443
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.20 E-value=4.2 Score=41.51 Aligned_cols=116 Identities=8% Similarity=-0.065 Sum_probs=61.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CC------------
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DA------------ 86 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg------------ 86 (732)
.....++|+.+.++-......|+--|+.+.+....+ .-....+-...|..+.++..++-.-. |.
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 335667788887765555568888899988765444 44555565677765543455443211 11
Q ss_pred -------cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC---C-cEEEEECCCC
Q 004739 87 -------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---G-TLRQHDFRQG 149 (732)
Q Consensus 87 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d---g-~i~vwd~~~~ 149 (732)
.|.--|+.+++ ...+..-...+..+.|+|.++.+|+-|-+. . .-|||-+++.
T Consensus 162 ~~a~p~~~i~~idl~tG~-----------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGE-----------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp HHC---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred HhhCCCceEEEEECCCCc-----------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 12233343322 233444567788999999888888777542 2 1366766543
No 365
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.16 E-value=0.066 Score=36.17 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=29.9
Q ss_pred cccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004739 638 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP 672 (732)
Q Consensus 638 ~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~ 672 (732)
...|..++|+|...+||.+..||.|.|+.+ .++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=1.6 Score=45.52 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=85.6
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCC--E-----EEEEeCCCcEEEEeCCCC-e-eEEEEccCC----CcCeEEEEEec
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGS--L-----LISGSDDTHINVWSYSSR-K-LLHSIETGH----SANVFCTKFVP 72 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~--~-----lasg~~dg~i~vWd~~~~-~-~~~~~~~~h----~~~V~~~~~s~ 72 (732)
+++++.+.+++-|.+ |+-+.+.|+.+ . -+.|-.|+.|.-||++-. . .+... ++| .....|.+-..
T Consensus 363 IE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~-q~kqy~~k~nFsc~aTT~ 440 (644)
T KOG2395|consen 363 IERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV-QSKQYSTKNNFSCFATTE 440 (644)
T ss_pred cccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee-eccccccccccceeeecC
Confidence 567788888888777 88888888653 2 234667889999998732 2 22212 333 24456666555
Q ss_pred CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 73 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 73 ~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
+ .+|+.|+.+|.|++||--.. .....+.+...+|..|..+.+| ..|+ |..+..+.+-++.-
T Consensus 441 s---G~IvvgS~~GdIRLYdri~~----------~AKTAlPgLG~~I~hVdvtadG-Kwil-~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 441 S---GYIVVGSLKGDIRLYDRIGR----------RAKTALPGLGDAIKHVDVTADG-KWIL-ATCKTYLLLIDTLI 501 (644)
T ss_pred C---ceEEEeecCCcEEeehhhhh----------hhhhcccccCCceeeEEeeccC-cEEE-EecccEEEEEEEec
Confidence 5 59999999999999986321 1134567778899999999966 5553 33456888887654
No 367
>PHA02713 hypothetical protein; Provisional
Probab=94.95 E-value=1.1 Score=49.64 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=18.2
Q ss_pred CCCEEEEEecCC--eEEEEECCCCC
Q 004739 259 NGEEVLLSYSGE--HVYLMDVNHAG 281 (732)
Q Consensus 259 ~g~~l~~~~~dg--~v~iwd~~~~~ 281 (732)
+|++.++|+.+| .+..||..+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 678888888887 78888887754
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=0.042 Score=61.32 Aligned_cols=71 Identities=20% Similarity=0.399 Sum_probs=55.7
Q ss_pred eeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeec---CCCCeEEEecCCCcEEEEcCCCCC
Q 004739 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCH---PFDCVVATSGIDNTIKIWTPSASV 671 (732)
Q Consensus 598 i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fs---p~~~~l~S~s~D~~i~vW~~~~~~ 671 (732)
+.+++| +.||++++.|-.+|.|.+||..++++++.+.-|..+++++-++ .++..+.++..-|. +|...=.+
T Consensus 133 Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 133 VTSVAF-NQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred ceeeEe-cCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 445555 9999999999999999999999999999998877766665544 45567888887775 67654333
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.68 E-value=1.9 Score=47.69 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=85.9
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEEEcCCCC
Q 004739 30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRFS 97 (732)
Q Consensus 30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vwd~~~~~ 97 (732)
.+.+++.||.+ ..+..+|..+++......-.+...-.+++...+ .+.++|+.| .++..||..+.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCCCc
Confidence 45677788776 368888988875544332234455567777765 788999988 346777877643
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-----EEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-----LRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
. ..+..+...........+ ++.+.|.||.||. +-.||..+.+-
T Consensus 361 W--------~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W--------------------- 408 (571)
T KOG4441|consen 361 W--------TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKW--------------------- 408 (571)
T ss_pred e--------eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcc---------------------
Confidence 2 223333322222222222 5688889998863 66677666542
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCC------eEEEEECCCCC
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA------FARLYDRRMLP 218 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg------~v~iwd~~~~~ 218 (732)
..+............+.+ ++.+.++||.++ .+..||..+..
T Consensus 409 --~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 409 --TPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred --cccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 112212112222223333 377888888553 46788887653
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.8 Score=47.56 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=93.6
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-----EEEECCCcEEEEEcCCCCCCCCCC
Q 004739 30 KGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 30 dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-----~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
+.++|+ ++.....++=-|++.|+.+... .-+.. |+-+.+.|+..+..+ +.|-.|..|+-||++-.....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k--- 418 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK--- 418 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---
Confidence 444444 4555567888899999999988 44544 778888887433332 345668889999998532211
Q ss_pred CCCCCceeeccc----cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 104 NAITPSALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 104 ~~~~~~~~~~~h----~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
+..-++| .....|++-. +..+|+.||.+|.||+||- .+... -..
T Consensus 419 -----l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~A------------------------KTA 466 (644)
T KOG2395|consen 419 -----LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRA------------------------KTA 466 (644)
T ss_pred -----eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhh------------------------hhc
Confidence 2222222 2234455444 4468999999999999996 33211 122
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
.|+-..+|..+..+.+ |++|++.+ +..+.+.+..
T Consensus 467 lPgLG~~I~hVdvtad-GKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTAD-GKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccCCceeeEEeecc-CcEEEEec-ccEEEEEEEe
Confidence 3444558889999988 66665544 6678888764
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.57 E-value=5.4 Score=39.60 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=85.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004739 29 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
..++.|+.|..+| +.+++.........+ .+...|..+...|+- +.|+.-+ |+.+.++++..............+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~~--~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPEL--NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEeccc--CEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899998888 999998433333333 233349999999984 4554443 699999999864332210000000
Q ss_pred ----ceeeccccCceeEEE--EecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004739 109 ----SALYQCHTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 182 (732)
Q Consensus 109 ----~~~~~~h~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (732)
..........+..++ -.+.+...|+ ......|.+|.......... .. .+.+.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~---------~~--------~ke~~---- 136 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFS---------KL--------LKEIS---- 136 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccc---------ce--------eEEEE----
Confidence 000111223344444 1122334444 44456899888776421100 00 00111
Q ss_pred CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
-...+.++.|.+ +.++.|..+ ...+.|+.++..
T Consensus 137 lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 137 LPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred cCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCc
Confidence 113678888884 367777654 477888886543
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=3 Score=40.05 Aligned_cols=61 Identities=11% Similarity=0.238 Sum_probs=44.1
Q ss_pred EEcCCCCEEEEEeC-----CCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 26 SWNSKGSLLISGSD-----DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 26 ~~s~dg~~lasg~~-----dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
.|||||.+|...-. .|.|-|||...+ +.+.++ ..|.-.-..+.+.++ |..++.+ +|-|...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvva--nGGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVA--NGGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEe--CCceecc
Confidence 48999998887633 377999998754 456667 677777788999999 5777765 3444444
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=7.5 Score=40.75 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=117.4
Q ss_pred ceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
....+...+++..+.... ....+.+-+.......... ..-...-..+..++.+ .+.++....++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~~~- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATNTV- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCcccce-
Confidence 455677888885444332 2235555555522222212 1111334577788874 24566666679999999665321
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
..... -......++++|++....++-. .++.+.+.|..+.+... . .
T Consensus 109 ---------~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~-------- 156 (381)
T COG3391 109 ---------LGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-I-------- 156 (381)
T ss_pred ---------eeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-E--------
Confidence 12211 1225678999997756555555 36788888877765320 0 1
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
+.+. .+ ..++++|++...+++-..++.|.+.|........ - .. ... ..... ....+.++
T Consensus 157 --~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-~~------------~~~--~~~~~-~P~~i~v~ 215 (381)
T COG3391 157 --PVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G-SV------------GSL--VGVGT-GPAGIAVD 215 (381)
T ss_pred --ecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c-cc------------ccc--cccCC-CCceEEEC
Confidence 1111 12 7889999944355555578999999977654331 0 00 000 00011 24568999
Q ss_pred CCCCEEEEEecC---CeEEEEECCCCC
Q 004739 258 PNGEEVLLSYSG---EHVYLMDVNHAG 281 (732)
Q Consensus 258 p~g~~l~~~~~d---g~v~iwd~~~~~ 281 (732)
|+|+++++.... +.+...|..+..
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCce
Confidence 999987777664 588888888743
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.45 E-value=0.074 Score=58.47 Aligned_cols=105 Identities=9% Similarity=-0.073 Sum_probs=63.3
Q ss_pred CCccccccCCCCCCCCCCCC------CCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCC------
Q 004739 550 DSARETVDANGSSGSPSSSS------QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDD------ 617 (732)
Q Consensus 550 ~~v~~~~~s~d~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~D------ 617 (732)
..+.+.++||||+.+|.... +....+|-..........+.|.. .+.-. |||||++|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~--~t~Ps----WspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHS--LTRPS----WSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCC--CCCce----ECCCCCceEEEecCcceEEE
Confidence 35678999999999887641 33345564332222333334432 33344 79999988877532
Q ss_pred ------CcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEE
Q 004739 618 ------GRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKI 664 (732)
Q Consensus 618 ------g~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~v 664 (732)
+.+.+.++..++..+ ...+.|..+.|||||..||-.. ++.|.|
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223333554444433 2356799999999999666554 466655
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.43 E-value=3.3 Score=42.76 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=35.0
Q ss_pred cEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceee---ecCCCCceeeeccC--CCCccCCCCCCccCCCccccc
Q 004739 250 HLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPT--LNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~ 322 (732)
-|+.+.+|.|.++|+.++- .|.|+.||+..+..+.... ..+...+. -.|. .+.+...++-+..|.||+.+.
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~--~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG--DHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B----TTS------S----EEE-TTSSEEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC--CCccccccccCCCCCeEEEccCCeEEE
Confidence 3899999999999988877 8999999999977655432 11211111 1122 223444556677788888776
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=5.3 Score=38.41 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=121.7
Q ss_pred eEEEEcCCC-CEEEEEeCCCc-EEEEeCCCCeeEEEEccCCCcC--eEEEEEecCCCCCEEEEEEC-----CCcEEEEEc
Q 004739 23 NAISWNSKG-SLLISGSDDTH-INVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAG-----DAEVRLFNL 93 (732)
Q Consensus 23 ~~l~~s~dg-~~lasg~~dg~-i~vWd~~~~~~~~~~~~~h~~~--V~~~~~s~~~~g~~l~s~~~-----dg~i~vwd~ 93 (732)
..|+|+|.- +-++.+-.-|+ ..++|..+.+.+..+ ...++. --.-.|||+ |.+|+..-. -|.|-|||.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-~s~~~RHfyGHGvfs~d--G~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-VSQEGRHFYGHGVFSPD--GRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-ecccCceeecccccCCC--CcEEEeecCCCCCCCceEEEEec
Confidence 356777743 44555555554 468888877766655 222211 122468999 577776533 367999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEE-ECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
+..- ..+..+..|.-....+.+.+|+ +.++.+. |-|..- |....+. .....+....+++-.++
T Consensus 148 r~~f---------qrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR~~l----NldsMePSlvlld~atG 211 (366)
T COG3490 148 REGF---------QRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGRTEL----NLDSMEPSLVLLDAATG 211 (366)
T ss_pred cccc---------ceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCcccc----chhhcCccEEEEecccc
Confidence 8532 2256777788788889999966 6665543 556655 3322221 11223344556665666
Q ss_pred ccccccCCC--CCccceEEEEecCCCCCEEEEEeCCCe-----EEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 173 AKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 173 ~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~tg~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
........+ .+.-.+..++..++ +..++.+-..|. --+=-...++++.-+..+.. .. ..
T Consensus 212 ~liekh~Lp~~l~~lSiRHld~g~d-gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee-----------~~--~~ 277 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHLDIGRD-GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEE-----------QT--AA 277 (366)
T ss_pred chhhhccCchhhhhcceeeeeeCCC-CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHH-----------HH--HH
Confidence 655555555 45567788888887 443333322111 00111111222211110000 00 00
Q ss_pred CccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG 281 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~ 281 (732)
-.+ .|-+++.+.+..+++..+- .+...+||..++.
T Consensus 278 ~an-YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 278 FAN-YIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHh-hhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 011 3667888765555555554 5577899999965
No 377
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.11 E-value=2.8 Score=39.61 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 110 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 110 (732)
..+++.|+..+.+.--|..+|+.+.+. --..+|.+-+..- |++++.|+..|.+.+-+.++++. ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~vv---gdfVV~GCy~g~lYfl~~~tGs~----------~w 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIVV---GDFVVLGCYSGGLYFLCVKTGSQ----------IW 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEEE---CCEEEEEEccCcEEEEEecchhh----------ee
Confidence 357888999999999999999887664 2345565555553 47899999999999999998632 23
Q ss_pred eeccccCceeE-EEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004739 111 LYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGS 150 (732)
Q Consensus 111 ~~~~h~~~v~~-l~~~p~~~~~l~s~s~dg~i~vwd~~~~~ 150 (732)
.+... +.|.+ ....+ ++.++..++.|+..+.-|.++..
T Consensus 88 ~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 88 NFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred eeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccc
Confidence 33221 12222 23344 44899999999999999998865
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.98 E-value=5.7 Score=38.36 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=107.8
Q ss_pred cccEeeeccCC--ceeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 10 SQERELEGHQG--CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+.++++. |.. -...+.|..+|.++-+.+.-| .|+.+|+.+++.+....-...--=..+....+ .+..-.=.+
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~ 109 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKE 109 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSS
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecC
Confidence 4445543 332 234577877888888887655 79999999998876653233322345666654 555555678
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+...+||..+.+ .+..+. ....=..++. ++..++.|=+ ...|+++|..+.+... .
T Consensus 110 ~~~f~yd~~tl~----------~~~~~~-y~~EGWGLt~--dg~~Li~SDG-S~~L~~~dP~~f~~~~-----------~ 164 (264)
T PF05096_consen 110 GTGFVYDPNTLK----------KIGTFP-YPGEGWGLTS--DGKRLIMSDG-SSRLYFLDPETFKEVR-----------T 164 (264)
T ss_dssp SEEEEEETTTTE----------EEEEEE--SSS--EEEE--CSSCEEEE-S-SSEEEEE-TTT-SEEE-----------E
T ss_pred CeEEEEccccce----------EEEEEe-cCCcceEEEc--CCCEEEEECC-ccceEEECCcccceEE-----------E
Confidence 999999998642 234433 2334456663 3545555544 4579999987665220 0
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc-ccc-c
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM-HLS-E 243 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 243 (732)
+--...+ .....++-+.+- + |...|=.-....|...|..+++....+... .+.+. ... .
T Consensus 165 i~V~~~g---------~pv~~LNELE~i-~-G~IyANVW~td~I~~Idp~tG~V~~~iDls--------~L~~~~~~~~~ 225 (264)
T PF05096_consen 165 IQVTDNG---------RPVSNLNELEYI-N-GKIYANVWQTDRIVRIDPETGKVVGWIDLS--------GLRPEVGRDKS 225 (264)
T ss_dssp EE-EETT---------EE---EEEEEEE-T-TEEEEEETTSSEEEEEETTT-BEEEEEE-H--------HHHHHHTSTTS
T ss_pred EEEEECC---------EECCCcEeEEEE-c-CEEEEEeCCCCeEEEEeCCCCeEEEEEEhh--------Hhhhccccccc
Confidence 0000000 011134445554 2 555555555666777777777543322110 00000 000 0
Q ss_pred CCCccccEEEEEEcCCCCEEEEEec
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
......-.+.+|+.|..+.|+..+.
T Consensus 226 ~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 226 RQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp T--TTS-EEEEEEETTTTEEEEEET
T ss_pred ccccCCeeEeEeEeCCCCEEEEEeC
Confidence 0001224899999998776666554
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.95 E-value=3.9 Score=45.25 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=79.5
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcC-eEEEEEecCCCCCEEEEEECCCc-----EEEEEcCCCC
Q 004739 30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDAE-----VRLFNLSRFS 97 (732)
Q Consensus 30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~-V~~~~~s~~~~g~~l~s~~~dg~-----i~vwd~~~~~ 97 (732)
++...++||.| .++..||..+.+....- .-.... =.+++... |.+.+.|+.||. |-.||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a-~M~~~R~~~~v~~l~---g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA-PMNTKRSDFGVAVLD---GKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccC-CccCccccceeEEEC---CEEEEEeccccccccccEEEecCCCCc
Confidence 45778888888 35778888877644311 111111 11222222 478889998865 6778877543
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC------cEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
- ..+..+.. .........-++.+.+.||.++ ++..||..+..-
T Consensus 408 W--------~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------------------- 456 (571)
T KOG4441|consen 408 W--------TPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-------------------- 456 (571)
T ss_pred c--------cccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce--------------------
Confidence 2 22333322 2222222222568888888654 456777766542
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe-----EEEEECCCCC
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDRRMLP 218 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-----v~iwd~~~~~ 218 (732)
..+..............++ +.+.+.||.|+. |..||..+.+
T Consensus 457 ---~~~~~M~~~R~~~g~a~~~---~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 457 ---TLIAPMNTRRSGFGVAVLN---GKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ---eecCCcccccccceEEEEC---CEEEEECCccCCCccceEEEEcCCCCc
Confidence 1122221122122222232 668888887763 7778887654
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.74 E-value=5.6 Score=44.07 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=58.6
Q ss_pred CceeEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-CcEEE
Q 004739 20 GCVNAISWNSKGSLLISGS------DDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRL 90 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~------~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g~i~v 90 (732)
..+...+++|||+.+|..- .|+ .|.+++.. +.. ..+..+. ..+.-.|+|+ |..|.+.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspD--G~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSLD--ADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECCC--CCceEEEecCcceEEE
Confidence 4677889999999887654 244 44555542 222 3332333 3788999999 4666665432 12222
Q ss_pred EEcCCCCCCCC--CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004739 91 FNLSRFSGRGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 143 (732)
Q Consensus 91 wd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~v 143 (732)
.+-.. .++.. ...... ... .....|..+.|+|++.++++. . ++.|.+
T Consensus 424 ~~~~~-~gql~~~~vd~ge-~~~--~~~g~Issl~wSpDG~RiA~i-~-~g~v~V 472 (591)
T PRK13616 424 IRDPA-TGQLARTPVDASA-VAS--RVPGPISELQLSRDGVRAAMI-I-GGKVYL 472 (591)
T ss_pred eccCC-CceEEEEeccCch-hhh--ccCCCcCeEEECCCCCEEEEE-E-CCEEEE
Confidence 22111 00000 000000 111 234579999999977444443 3 466766
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.65 E-value=5.3 Score=43.49 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC-----cCeE--EEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVF--CTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~-----~~V~--~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
+..+..++.++.|.-.|..+|+.+.++..... ..+. .+.... +..++.++.++.|.-+|.++++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~---~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWD---PRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEcc---CCeEEEecCCCeEEEEECCCCC
Confidence 44566777889999999999998877632221 0010 111111 1577788889999999998754
No 382
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.09 E-value=3.9 Score=43.46 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=78.6
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE-
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF- 91 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw- 91 (732)
+.+-...-....+.++|+|++++.++ ||.-.|+.....+... .+.-....|.+. +.+++-...++|.|+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~------~G~g~~~vw~~~---n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA------FGSGLSFVWSSR---NRYAVLESSSTIKIYK 95 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE------EEE-SEEEE-TS---SEEEEE-TTS-EEEEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc------cCceeEEEEecC---ccEEEEECCCeEEEEE
Confidence 33434455688999999999999854 6788888744433322 133456788885 467777778999996
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
++.... ...+.- ...+..|-. +.+|...+.+ .|.+||+.+++.+ .
T Consensus 96 n~~~~~-----------~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i--------------~---- 140 (443)
T PF04053_consen 96 NFKNEV-----------VKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLI--------------R---- 140 (443)
T ss_dssp TTEE-T-----------T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EE--------------E----
T ss_pred cCcccc-----------ceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhhHccee--------------e----
Confidence 443211 112221 123444432 4666665554 8999999988632 1
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
.+ ....|..+.|+++ +.+++..+.+ .+.|++..
T Consensus 141 ----~i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 141 ----RI-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYN 173 (443)
T ss_dssp ----EE-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-
T ss_pred ----EE-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEec
Confidence 11 0114789999998 7788887755 67787654
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.09 E-value=0.98 Score=45.95 Aligned_cols=219 Identities=13% Similarity=0.175 Sum_probs=96.0
Q ss_pred EEcCCCCEEEEEe-CCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 26 SWNSKGSLLISGS-DDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 26 ~~s~dg~~lasg~-~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
+|.+||++|+-++ .|| .+.+-|+.+++..+.. .+-........++|+. +.++-......|+--|+++.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~~--~~~~Yv~~~~~l~~vdL~T~e~~--- 115 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPDD--RALYYVKNGRSLRRVDLDTLEER--- 115 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTS--SEEEEEETTTEEEEEETTT--EE---
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecCC--CeEEEEECCCeEEEEECCcCcEE---
Confidence 5678997666554 454 5666688888877655 3332334456677874 67666666678888888875321
Q ss_pred CCCCCCceeeccccCceeEEEEecC-CCcEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccceEEeeccCCccccccCC
Q 004739 103 DNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNILLDLRCGAKRSLADP 180 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (732)
..+.-....+-...|..+ +...++-.-.... -|...+. +...........+..+.+++.+|....+...
T Consensus 116 -------~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~--d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 116 -------VVYEVPDDWKGYGTWVANSDCTKLVGIEISRE--DWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp -------EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG--G-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred -------EEEECCcccccccceeeCCCccEEEEEEEeeh--hccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 222222344434455422 3344332211000 0000000 0000111223445566677777765555432
Q ss_pred CCCccceEEEEecCCCCCEEEEEeC---CCe-EEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGS---DAF-ARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~---dg~-v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
...+..+.|+|.++.+|+-|-. +.. -|||-+++.. ....+.. . .....+..=-
T Consensus 187 ---~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~------------------~-~~~e~~gHEf 244 (386)
T PF14583_consen 187 ---TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR------------------R-MEGESVGHEF 244 (386)
T ss_dssp ---SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----------------------TTEEEEEEE
T ss_pred ---CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec------------------C-CCCccccccc
Confidence 3367788999987777777643 231 3677665322 1111100 1 1122355667
Q ss_pred EcCCCCEEEEEec-----CCeEEEEECCCCC
Q 004739 256 FSPNGEEVLLSYS-----GEHVYLMDVNHAG 281 (732)
Q Consensus 256 ~sp~g~~l~~~~~-----dg~v~iwd~~~~~ 281 (732)
|.|+|..|.--+. +..|.-+|+.+++
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 8899876654322 3356666776643
No 384
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.89 E-value=14 Score=40.34 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEE-EEeecCCCC-eEEEec
Q 004739 607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVN-CVQCHPFDC-VVATSG 657 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~-~v~fsp~~~-~l~S~s 657 (732)
.+.+|+.|+.||.++.+|.+||+.+.+++-...... =+.|..+|+ |+++.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEe
Confidence 457788888999999999999999988775222211 222444565 444443
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.58 E-value=3.8 Score=45.05 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=75.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
..+-+.-|.-++..++-+...++.|||...+.....-.-...+.|.++.|....+|+.+++.+..+.|.++.-...+...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444444444444445679999999887555442245789999999876667999999999999999653211100
Q ss_pred CCCCCCCCceee--cccc-CceeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004739 101 LDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF 146 (732)
Q Consensus 101 ~~~~~~~~~~~~--~~h~-~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 146 (732)
..+.+.++..+ ..|+ .+|.+..|.+++ .+++ |+ ++.+.|+|-
T Consensus 111 -~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 -KGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVV-GS-GNQLFVFDK 155 (631)
T ss_pred -CCcccceeEEEEeecCCCCCccceeEecCC-eEEE-Ee-CCEEEEECC
Confidence 01112233322 3344 678999999854 4443 33 357888874
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.45 E-value=9.3 Score=35.68 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=78.6
Q ss_pred CcCeEEEEEecCCCCCEEEEEECC---------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 62 SANVFCTKFVPETSDELVVSGAGD---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
..+.+.-..+|+ |++++-.-.| |.++.|-... .+......-.--+.++|..+...+.
T Consensus 108 knR~NDgkvdP~--Gryy~GtMad~~~~le~~~g~Ly~~~~~h------------~v~~i~~~v~IsNgl~Wd~d~K~fY 173 (310)
T KOG4499|consen 108 KNRLNDGKVDPD--GRYYGGTMADFGDDLEPIGGELYSWLAGH------------QVELIWNCVGISNGLAWDSDAKKFY 173 (310)
T ss_pred hcccccCccCCC--CceeeeeeccccccccccccEEEEeccCC------------CceeeehhccCCccccccccCcEEE
Confidence 455677778888 4664332222 3455554431 1223333334457788987654555
Q ss_pred EEEeCCCcEEEEE--CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 133 WSASEDGTLRQHD--FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 133 ~s~s~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
++-+.+-.|.-|| ..++.. ..+..+++++......-..+ -.++...+ |++.++.-..++|.
T Consensus 174 ~iDsln~~V~a~dyd~~tG~~---------snr~~i~dlrk~~~~e~~~P-------DGm~ID~e-G~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 174 YIDSLNYEVDAYDYDCPTGDL---------SNRKVIFDLRKSQPFESLEP-------DGMTIDTE-GNLYVATFNGGTVQ 236 (310)
T ss_pred EEccCceEEeeeecCCCcccc---------cCcceeEEeccCCCcCCCCC-------CcceEccC-CcEEEEEecCcEEE
Confidence 5667777787788 555542 33456677665432211112 22334555 88999999999999
Q ss_pred EEECCCCCCCccc
Q 004739 211 LYDRRMLPPLTSC 223 (732)
Q Consensus 211 iwd~~~~~~~~~~ 223 (732)
..|+.+++.+..+
T Consensus 237 ~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 237 KVDPTTGKILLEI 249 (310)
T ss_pred EECCCCCcEEEEE
Confidence 9999999877665
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.40 E-value=13 Score=37.31 Aligned_cols=170 Identities=9% Similarity=0.037 Sum_probs=88.9
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc---CC-CcCeEEEEEecCCCCCEEEEEEC---------CCc
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET---GH-SANVFCTKFVPETSDELVVSGAG---------DAE 87 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~---~h-~~~V~~~~~s~~~~g~~l~s~~~---------dg~ 87 (732)
.+.++..-.++..|+++. .-+.+++.+++..+..+.. +. ....+.+...|+ |.+.++... ...
T Consensus 67 ~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd--G~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 67 GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD--GRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC--CCEEEeCCCccccCccccCCc
Confidence 334433333444555443 2377788766655322211 11 245577888888 465555433 011
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
=.||.+.-. + ..+..+..+-..-+.|+|+|++..++++=+..+.|.-|++...... .......+
T Consensus 143 G~lyr~~p~-g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~-------~~~~~~~~ 206 (307)
T COG3386 143 GSLYRVDPD-G--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP-------IGGRRGFV 206 (307)
T ss_pred ceEEEEcCC-C--------CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc-------cCCcceEE
Confidence 134444311 1 1134445556667899999977555555566678888887641100 00001111
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC-eEEEEECCCCCCCccc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSC 223 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~ 223 (732)
......+..-.++...+ |++.+++..+| .|.+|+.. ++.+..+
T Consensus 207 -----------~~~~~~G~PDG~~vDad-G~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 207 -----------DFDEEPGLPDGMAVDAD-GNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred -----------EccCCCCCCCceEEeCC-CCEEEecccCCceEEEECCC-CcEEEEE
Confidence 11112234456677777 66665555554 89999998 7666554
No 388
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.35 E-value=25 Score=40.58 Aligned_cols=236 Identities=12% Similarity=0.103 Sum_probs=115.9
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEc-------cCCCcCeEEEEEecCCCCCEEEEEECC---CcEEEEEcCCCCC--CC
Q 004739 33 LLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--RG 100 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~~~~~~~~~~-------~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~i~vwd~~~~~~--~~ 100 (732)
-++.-...|.+++|=.+......+.. ..-...|+..++.+..+|+.++.++.+ +.|++|.+.-.=+ ++
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 35555678999999763222222210 124456777777743335555555554 7888886543211 11
Q ss_pred -CCCCCCCCceeec---------------------cccCceeEEEEec------CCCcEEEEEeC----CCcEEEEECCC
Q 004739 101 -LDDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASE----DGTLRQHDFRQ 148 (732)
Q Consensus 101 -~~~~~~~~~~~~~---------------------~h~~~v~~l~~~p------~~~~~l~s~s~----dg~i~vwd~~~ 148 (732)
... ...|...+. .....++.+.|-+ ..+.++++.+. ...|.-|.++.
T Consensus 144 ~~d~-q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 144 QIDP-QKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred cCCC-CcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 001 000111000 0123566777765 23345555442 34688999887
Q ss_pred CCCCCC-CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCC
Q 004739 149 GSSCPP-AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 227 (732)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~ 227 (732)
...... .+..-...........................|.++..... +..++....||+|.++|..+.+.+.......
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~ 301 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNG 301 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhccccccc
Confidence 653211 10000000000000000000000111112336777777666 6689999999999999999987765541111
Q ss_pred CCCCcccc-ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEE
Q 004739 228 SPPPCVNY-FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 273 (732)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~ 273 (732)
..+..+.. +......+ ... ++..++|||++--++.-..+|.+.
T Consensus 302 ~~~~~v~s~~~~Gf~fp--~~~-~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 302 EPPNTVTSLFQAGFHFP--CIQ-PPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CCccccccccccccccc--cCC-CCceEEECcccceEEEEecCCCce
Confidence 11111111 11111111 011 355689999999889888898866
No 389
>PHA03098 kelch-like protein; Provisional
Probab=92.19 E-value=11 Score=41.60 Aligned_cols=63 Identities=6% Similarity=0.017 Sum_probs=33.2
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCC
Q 004739 30 KGSLLISGSDDT------HINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~dg------~i~vWd~~~~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~~ 96 (732)
++..++.||.++ .+..||..+.+....- .-. ...-.++... + +.+++.|+.+ ..+..||+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~R~~~~~~~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-ELIYPRKNPGVTVF-N--NRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC-CCCcccccceEEEE-C--CEEEEEeCCCCCEecceEEEEcCCCC
Confidence 455666776542 5778888777653221 111 1111122222 3 3677777765 34677887754
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.16 E-value=18 Score=41.01 Aligned_cols=28 Identities=32% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWS 47 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd 47 (732)
.-.|..+.+||+|++||..|..| |.|-.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~ 111 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLE 111 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEE
Confidence 45788889999999999888755 44443
No 391
>PHA02713 hypothetical protein; Provisional
Probab=92.14 E-value=2.4 Score=46.84 Aligned_cols=22 Identities=0% Similarity=0.155 Sum_probs=17.3
Q ss_pred CCEEEEEeCCC--eEEEEECCCCC
Q 004739 197 PHLLLVGGSDA--FARLYDRRMLP 218 (732)
Q Consensus 197 ~~~l~tg~~dg--~v~iwd~~~~~ 218 (732)
+++.++|+.++ .+..||+.+.+
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CEEEEEeeecceeehhhcCccccc
Confidence 67899999888 67778877653
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.10 E-value=14 Score=36.93 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=75.5
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
+-...+..+..++||+++++++.-....-||.....-...- ..-...|..|.|.|+ +.+.+ ....|.|+.=+....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~--~~lw~-~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD--GNLWM-LARGGQIQFSDDPDD 217 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT--S-EEE-EETTTEEEEEE-TTE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC--CCEEE-EeCCcEEEEccCCCC
Confidence 34467888899999999998876555568875543222222 345688999999999 35545 448888888772210
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
.... .+++.....-.-.+..++|.+++ .+.++|+ .|.+ +.....++.- ..
T Consensus 218 -~~~w----~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l-~~S~DgGktW----------------------~~ 267 (302)
T PF14870_consen 218 -GETW----SEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTL-LVSTDGGKTW----------------------QK 267 (302)
T ss_dssp -EEEE-------B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-----------------------EE
T ss_pred -cccc----ccccCCcccCceeeEEEEecCCC-CEEEEeC-CccE-EEeCCCCccc----------------------eE
Confidence 0000 00111111223447889999843 5665554 4555 4444454421 00
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
......-...++.+.|.+. .+-++ -+.+|.|--|
T Consensus 268 ~~~~~~~~~n~~~i~f~~~-~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 268 DRVGENVPSNLYRIVFVNP-DKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -GGGTTSSS---EEEEEET-TEEEE-E-STTEEEEE
T ss_pred CccccCCCCceEEEEEcCC-CceEE-ECCCcEEEEe
Confidence 0011112335778888764 33444 4567776544
No 393
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.95 E-value=0.6 Score=44.29 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=51.7
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEE-------e-------cCcccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKML-------L-------GDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l-------~-------gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~ 669 (732)
+..+++||+.-..+|.+++||+.+++++..- . .....|+.+..+.+|.-|++-+. |....|+.+=
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecccc
Confidence 4668999999999999999999998865432 2 46678999999999987777764 6677777653
No 394
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=2.5 Score=48.31 Aligned_cols=201 Identities=15% Similarity=0.086 Sum_probs=109.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCC-------e---------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSR-------K---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~-------~---------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.++.++...+++.++..+.+.|+-..+- . ....+.-...-+|..+...++.....++..+.+-.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 4556665556666666666666643211 0 01112111233445555555521123333344557
Q ss_pred EEEEEcCCCCCCCCCCCC-CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 88 VRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
|..||++........... ...............++.|+|.-+...+.+..|+.|++..+......
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~-------------- 191 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN-------------- 191 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhh--------------
Confidence 899999864322110000 00011122223456678888866666778888999998876544321
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
..........++++|+|. |+.++.|-..|++.-|-..-. ....+. |. ...
T Consensus 192 -----------v~s~p~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~le-ik~~ip-------~P----------p~~ 241 (1405)
T KOG3630|consen 192 -----------VTSFPVTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLE-IKSEIP-------EP----------PVE 241 (1405)
T ss_pred -----------hcccCcccceeeEEeccc-cceeeEecCCCeEEEeecccc-eeeccc-------CC----------CcC
Confidence 001122337799999998 899999999999988865422 111110 00 001
Q ss_pred ccccEEEEEEcCCCCEEEEEec
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
....|.+|.|-....+|+.-+.
T Consensus 242 e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 242 ENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred CCcceeEEEEecceeEEEEecc
Confidence 1225999999888777665443
No 395
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=1.8 Score=45.08 Aligned_cols=99 Identities=11% Similarity=0.102 Sum_probs=58.4
Q ss_pred CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC--
Q 004739 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-- 260 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-- 260 (732)
-...|..+..++. |..++..|.+|.+.++=.+...+-..+....+...|-..-....+.... ....+..++|+|+.
T Consensus 102 V~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 102 VLFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred ceEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccC
Confidence 3457888999998 7788888888877665433222222221111111221111111111111 22247889999976
Q ss_pred -CEEEEEecCCeEEEEECCCCCCc
Q 004739 261 -EEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 261 -~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
..|+.-+.|+.||+||+......
T Consensus 180 D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchh
Confidence 68899999999999999886543
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.23 E-value=22 Score=37.35 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=37.7
Q ss_pred CceeEEEEcC-----------CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec
Q 004739 20 GCVNAISWNS-----------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 72 (732)
Q Consensus 20 ~~V~~l~~s~-----------dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~ 72 (732)
+.|+++.+-| |...++.|..+|.|++|.- +|..+..- .-|..+|..+....
T Consensus 57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q-~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTE-NGVLLLSQ-LLHEEPVLKIKCRS 118 (415)
T ss_pred CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEec-cchHHHHH-hcCccceEEEEecc
Confidence 4677666543 4578999999999999984 66655544 46888999988764
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.08 E-value=0.79 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=27.0
Q ss_pred CceeEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 004739 117 RRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 117 ~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~ 148 (732)
+.|.++.|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998665 6888888889999999985
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.00 E-value=2.9 Score=43.63 Aligned_cols=84 Identities=12% Similarity=0.159 Sum_probs=58.5
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec--CCCCC---------
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP--ETSDE--------- 77 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~--~~~g~--------- 77 (732)
+.....|......+.+++.+|++++.|+...=|.|.|+|+.++..++.+ +|..++= +.|.. +....
T Consensus 297 l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAq--c~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 297 LPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQ--CGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred cceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccce--EEEEEeecccccccccccccC
Confidence 3444556667778999999999999888877799999999999888777 6665542 22211 11011
Q ss_pred --------EEEEEECCCcEEEEEcCC
Q 004739 78 --------LVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 78 --------~l~s~~~dg~i~vwd~~~ 95 (732)
+++-+-.-|.|.||.++.
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~ 399 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQ 399 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCC
Confidence 234455678888888875
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.84 E-value=7.4 Score=43.31 Aligned_cols=160 Identities=9% Similarity=0.073 Sum_probs=94.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEE------EEc---------------cCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLH------SIE---------------TGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~------~~~---------------~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
+.+|+.+. .+.|.||++....... .+. ..-...|+.|....-+....|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 5789999976432211 110 0112336666554433347899999999999
Q ss_pred EEEcCCCC---------CCC-CCCCCCCCceeeccccCceeEEEEe--cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004739 90 LFNLSRFS---------GRG-LDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 90 vwd~~~~~---------~~~-~~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 157 (732)
+|.++.-- ... .......|...+. ...++++++++ . ..++||.++....|.||-.........
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~--- 202 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFY--- 202 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccc---
Confidence 99774210 000 0001223444444 34589999998 5 448888888888888876554321100
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCC----CC-EEEEEeCCCeEEEEECC
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR----PH-LLLVGGSDAFARLYDRR 215 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~----~~-~l~tg~~dg~v~iwd~~ 215 (732)
......+...|-+++|-++. |. .+++++-.|.+.+|++.
T Consensus 203 -------------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 203 -------------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred -------------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 00001133467788887653 22 78888899999998883
No 400
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.69 E-value=1.2 Score=29.26 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=26.3
Q ss_pred CceeEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 004739 20 GCVNAISWNSKG---SLLISGSDDTHINVWSYSSR 51 (732)
Q Consensus 20 ~~V~~l~~s~dg---~~lasg~~dg~i~vWd~~~~ 51 (732)
+.|+++.|||+. .+|+-+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 58888877899999999853
No 401
>PHA02790 Kelch-like protein; Provisional
Probab=90.47 E-value=18 Score=39.27 Aligned_cols=106 Identities=8% Similarity=-0.080 Sum_probs=50.9
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--CcEEEEEcCCCCCCCCC
Q 004739 30 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 30 dg~~lasg~~dg-----~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--g~i~vwd~~~~~~~~~~ 102 (732)
++..++.||.++ ++..||..+.+....-.-.....-.++.. -+ |.+.+.|+.+ ..+..||..+...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~--~~iYviGG~~~~~sve~ydp~~n~W---- 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-AN--NKLYVVGGLPNPTSVERWFHGDAAW---- 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-EC--CEEEEECCcCCCCceEEEECCCCeE----
Confidence 455667777543 56778888765433221111111122222 23 3667777754 3577788764321
Q ss_pred CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---cEEEEECCCC
Q 004739 103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG 149 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~ 149 (732)
..+..+.........+.+ ++++.+.||.++ .+..||..+.
T Consensus 344 ----~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 344 ----VNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred ----EECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCC
Confidence 112222211111112222 457777777653 3556776554
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.20 E-value=0.99 Score=49.95 Aligned_cols=135 Identities=13% Similarity=0.034 Sum_probs=70.0
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC--CCcEEEEEe
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSAS 136 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s 136 (732)
++..+.|..+.|..... ..+. -.-|.+.|||+..-+++....- .+.........+.-+.|.|. +.-++..+-
T Consensus 129 kgf~G~v~dl~fah~~~-pk~~--~~vg~lfVy~vd~l~G~iq~~l---~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKC-PKGR--RLVGELFVYDVDVLQGEIQPQL---EVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred hcCCCCcccccccccCC-hHHH--HHhhhhheeehHhhccccccce---EEeecCcCCCCcceeeecccccccceeeecc
Confidence 56677888888865321 2222 3347789999986544432110 11222223334455666653 224454555
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
.++.|++..+.+... ..+.+|... ...+.+.......+. ..+|| |..+++++.||.++.|-+.
T Consensus 203 ~~~~i~lL~~~ra~~--~l~rsHs~~-----------~~d~a~~~~g~~~l~--~lSpD-Gtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR--SLFRSHSQR-----------VTDMAFFAEGVLKLA--SLSPD-GTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHH--HHHHhcCCC-----------cccHHHHhhchhhhe--eeCCC-CcEEEEeecCCccceeeee
Confidence 677888766654331 011111110 001111111111222 37898 8899999999999999765
No 403
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.66 E-value=29 Score=34.95 Aligned_cols=216 Identities=11% Similarity=0.009 Sum_probs=99.0
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 26 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 26 ~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
.|.++.. ++.+--..+.|.-|+..+++...-. +...+.++..... +..|+++. .-+.+++++.......
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~--~g~Lv~~~--~g~~~~~~~~~~~~t~--- 100 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDA--GGRLIACE--HGVRLLDPDTGGKITL--- 100 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecC--CCeEEEEc--cccEEEeccCCceeEE---
Confidence 4667666 4555557788999998866443222 2333445544444 25666653 3356667643221000
Q ss_pred CCCCceeeccc-cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004739 105 AITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 183 (732)
Q Consensus 105 ~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (732)
......+. ....+.+...|++ .+.+ +.... ++ ..... .........++. .+... .....+
T Consensus 101 ---~~~~~~~~~~~r~ND~~v~pdG-~~wf-gt~~~----~~--~~~~~-----~~~~G~lyr~~p-~g~~~--~l~~~~ 161 (307)
T COG3386 101 ---LAEPEDGLPLNRPNDGVVDPDG-RIWF-GDMGY----FD--LGKSE-----ERPTGSLYRVDP-DGGVV--RLLDDD 161 (307)
T ss_pred ---eccccCCCCcCCCCceeEcCCC-CEEE-eCCCc----cc--cCccc-----cCCcceEEEEcC-CCCEE--EeecCc
Confidence 00011111 1345566777754 3332 22221 22 00000 000000111111 11111 111122
Q ss_pred ccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004739 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 262 (732)
Q Consensus 184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 262 (732)
-..-+.|+|+|++..++++=+..+.|.-|++.. .-.+.. .-...+ . ....+ ..-.++...+|.+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~--------~~~~~~--~----~~~~G-~PDG~~vDadG~l 226 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG--------RRGFVD--F----DEEPG-LPDGMAVDADGNL 226 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC--------cceEEE--c----cCCCC-CCCceEEeCCCCE
Confidence 334578999999444444445568888888763 111100 000000 0 00111 2445778888887
Q ss_pred EEEEecCC-eEEEEECCCCCCccee
Q 004739 263 VLLSYSGE-HVYLMDVNHAGGRAMR 286 (732)
Q Consensus 263 l~~~~~dg-~v~iwd~~~~~~~~~~ 286 (732)
.+++..+| .|.+|+.. ++.....
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEEE
Confidence 65555554 89999888 5544433
No 404
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.54 E-value=27 Score=34.53 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=83.0
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 155 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 155 (732)
++.|+.|..+| +.++++..... +.... +...|..+...|.- +.++.-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~---------~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSK---------PTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCcc---------ceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 57899999888 89999832211 12222 33449999999854 5555554 499999999876643211
Q ss_pred CCCCcccceEEeeccCCccccccCCCCCccceEEEE-ecCCCCCEEEEEeCCCeEEEEECCCCCCCc-ccccCCCCCCcc
Q 004739 156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLT-SCQKRMSPPPCV 233 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~ 233 (732)
...... .. ............+...+ -....+...++......|.+|......... .. .
T Consensus 73 ~~~~~~-~~----------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~---------~ 132 (275)
T PF00780_consen 73 APLAFP-KS----------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL---------L 132 (275)
T ss_pred cccccc-cc----------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccce---------e
Confidence 100000 00 00000001111233333 111223344444445689998876531110 00 0
Q ss_pred ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
+. ..+ ...+..++|. ++.|+.|..+ ...+.|+.++.
T Consensus 133 ke---~~l------p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 133 KE---ISL------PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred EE---EEc------CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence 00 011 1258889998 5567777654 58889998743
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.52 E-value=6.5 Score=41.92 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=71.7
Q ss_pred ccCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCC-----CCeeE----EEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 17 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYS-----SRKLL----HSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 17 ~h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~-----~~~~~----~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
|.-+-|..+.|.|- -..|........|.||.+. +.+.+ ..+.....---..+.|+|.. ..|+.-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEe
Confidence 34467899999984 2234445566899999875 22222 22211111112467799984 5555444
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
....-.++++...+.+ ++.-..-.+.|.|.+|.+||.++++..+..=.-++||-...
T Consensus 132 ~~dvSV~~sV~~d~sr---------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSR---------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCce---------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 4444445666543221 22222346789999999988777766666556778986544
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.25 E-value=3.6 Score=40.23 Aligned_cols=111 Identities=11% Similarity=0.008 Sum_probs=66.0
Q ss_pred CccccccCCCCCCCCCCC-CCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEE-cCcc
Q 004739 551 SARETVDANGSSGSPSSS-SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE-KQTG 628 (732)
Q Consensus 551 ~v~~~~~s~d~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd-~~tg 628 (732)
.+.+.+.|+|++.+|... .++...+|...........+.|. . +..-+ |+++|...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~---l~~PS-~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--S---LTRPS-WDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--c---ccccc-ccCCCCEEEEEcCCCceEEEEecCCC
Confidence 578999999999887764 12333444333322233333444 2 33333 599988888877777777774 4444
Q ss_pred cEEE-EEecC-c-ccEEEEeecCCCCeEEEec---CCCcEEEEcC
Q 004739 629 RLIK-MLLGD-E-AVVNCVQCHPFDCVVATSG---IDNTIKIWTP 667 (732)
Q Consensus 629 ~~~~-~l~gH-~-~~V~~v~fsp~~~~l~S~s---~D~~i~vW~~ 667 (732)
+... .+..- . ..|+++++||||..+|-.. .++.|.|=-+
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 4322 12111 1 2899999999998544443 4566666543
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.75 E-value=21 Score=38.39 Aligned_cols=158 Identities=11% Similarity=0.137 Sum_probs=86.3
Q ss_pred CCceeEEEEcCCCCEEE-EEe--CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC--CCEEEEEECCCcEEEEEc
Q 004739 19 QGCVNAISWNSKGSLLI-SGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~la-sg~--~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~--g~~l~s~~~dg~i~vwd~ 93 (732)
-.+|..++|. ||+.++ |.- .+|.++.= +-+.+..| ..|.++.|.|-.. -..|++.-....|.||-+
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccC---CccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 4588999997 666444 332 23444332 23344444 4588999998521 124666677889999988
Q ss_pred CCCCCCCCCCCCCCCceeecccc-----CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 94 SRFSGRGLDDNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
....... .+.+....++- ---..+.|+|.. .+|+.-.....-.+++++.... ..-.|
T Consensus 90 ~~s~~e~-----~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s------------rVkaD 151 (671)
T PF15390_consen 90 CPSTTER-----NKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSS------------RVKAD 151 (671)
T ss_pred ccCcccc-----ccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCc------------eEEEe
Confidence 6321111 01122111111 112356799954 5665544443334556554331 11222
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCCeEEEEECCC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRM 216 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg~v~iwd~~~ 216 (732)
+ ...+.|.|.+|..| |.+|++ .++.=.-+|||-..
T Consensus 152 i------------~~~G~IhCACWT~D-G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 152 I------------KTSGLIHCACWTKD-GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred c------------cCCceEEEEEecCc-CCEEEEEeCCeEEEEEecCch
Confidence 2 23458999999999 555554 45555677888553
No 408
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=87.28 E-value=63 Score=37.35 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=43.9
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee-eecCCCC---ceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-YTVGDAS---KIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
.|.++....-+..++..-.||+|.++|-.+.+..... ....... ......-.+.... .+..++|||.+..++
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~-~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQ-PPLHVAFSPTMCSLV 336 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCC-CCceEEECcccceEE
Confidence 5888888888889999999999999999886544433 1111111 1111001111111 455678888777666
No 409
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.77 E-value=2.8 Score=27.23 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=24.8
Q ss_pred CCCCEEEEe-cCCCcEEEEEcCcccEEEEEec
Q 004739 606 QRGDYIASG-SDDGRWFIWEKQTGRLIKMLLG 636 (732)
Q Consensus 606 ~dg~~lasg-s~Dg~i~iWd~~tg~~~~~l~g 636 (732)
||+++|..+ ..+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 577766554 4688999999999998888776
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.67 E-value=15 Score=34.38 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=65.9
Q ss_pred CCceeEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 19 QGCVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~d---------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
+...+.-..+|+|++.+-.-.| |.++.|-.. + .+..+ ...-.--+.++|+.+. ..+.+.-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i-~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELI-WNCVGISNGLAWDSDA-KKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-Cceee-ehhccCCccccccccC-cEEEEEccCceEEe
Confidence 3455666778999985433222 233333221 1 11111 1112223678898775 24556667788888
Q ss_pred EEEcCCCCCCCCCCCCCCCceeecc----ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 151 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 151 (732)
-||..-..+..... +.+..++. ..-..-.++... .+++++++-..++|...|..+++.
T Consensus 184 a~dyd~~tG~~snr---~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNR---KVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred eeecCCCcccccCc---ceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcE
Confidence 89854433333211 11121211 011122344444 457888888889999999999874
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.62 E-value=1.7 Score=48.24 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=64.9
Q ss_pred ccCCCCEEEEecCCCcEEEEEcC-ccc----EEEEEecCcc--cEEEEeecCCC---------CeEEEec-CCCcEEEEc
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQ-TGR----LIKMLLGDEA--VVNCVQCHPFD---------CVVATSG-IDNTIKIWT 666 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~-tg~----~~~~l~gH~~--~V~~v~fsp~~---------~~l~S~s-~D~~i~vW~ 666 (732)
.||||..+|.++.||.++.|.+. +|+ |++..+.|.+ .|..+ |+... .+++++. ...-+++|.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEee
Confidence 49999999999999999999764 443 5556666763 24444 44322 2344444 355699999
Q ss_pred CCCCCCccc--------cCCCCCCCchh------HHHHHHHHHHHhhhccccc
Q 004739 667 PSASVPSIV--------SGGAAGPDTAD------VLEAMESNQRKLSRNREHS 705 (732)
Q Consensus 667 ~~~~~~~~~--------~~gh~~~~~~~------~~~~~~~~~~~~~~~~~~~ 705 (732)
....+++.. ..-|.+.++.+ ....+..+-+.+..+|.-.
T Consensus 322 ~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 322 EAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred ccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 998887722 12366676642 3445566666666666554
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.15 E-value=5.2 Score=45.92 Aligned_cols=118 Identities=7% Similarity=-0.026 Sum_probs=77.4
Q ss_pred CCceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeE--------EE--EccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 19 QGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLL--------HS--IETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~--------~~--~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
.-+|..+...+|+...++.. .+-.|..+|+++...- +. .......-..++.|.|.- ....+.+..|+
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dl 178 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDL 178 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhcccc
Confidence 35677777788877655543 3447889998753211 11 101122445788999875 35677788899
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
.|++.-+...... +..+ ......++++|+|.+ ..++.|-..|++..|...-
T Consensus 179 sl~V~~~~~~~~~---------v~s~-p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQN---------VTSF-PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred chhhhhhhhhhhh---------hccc-CcccceeeEEecccc-ceeeEecCCCeEEEeeccc
Confidence 9999877642211 1222 245678999999954 8888999999999887543
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.72 E-value=22 Score=36.98 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=38.9
Q ss_pred cCeEEEEEecCCCCCEEEEEE-----------CCC-cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004739 63 ANVFCTKFVPETSDELVVSGA-----------GDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 130 (732)
.....|+|.++ |+++++-. ..+ .|.+++-....+.. .....+.......+.+++.+++
T Consensus 14 ~~P~~ia~d~~--G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------d~~~vfa~~l~~p~Gi~~~~~G-- 83 (367)
T TIGR02604 14 RNPIAVCFDER--GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------DKSNVFAEELSMVTGLAVAVGG-- 83 (367)
T ss_pred CCCceeeECCC--CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------ceeEEeecCCCCccceeEecCC--
Confidence 44578899888 57666642 223 67777655444332 1123333334456889998843
Q ss_pred EEEEEeCCCcEEEE-EC
Q 004739 131 VVWSASEDGTLRQH-DF 146 (732)
Q Consensus 131 ~l~s~s~dg~i~vw-d~ 146 (732)
++++ ... .|..+ |.
T Consensus 84 lyV~-~~~-~i~~~~d~ 98 (367)
T TIGR02604 84 VYVA-TPP-DILFLRDK 98 (367)
T ss_pred EEEe-CCC-eEEEEeCC
Confidence 5543 443 34433 44
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.55 E-value=5.4 Score=37.90 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=43.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE------cc-------CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~------~~-------~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
+..++++|++-..+|.+++||+.+++.+..- .. .....|..+.++.+ |.-|++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence 4456888999999999999999998765432 11 23455666777655 45555543 466677766
Q ss_pred C
Q 004739 94 S 94 (732)
Q Consensus 94 ~ 94 (732)
.
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 5
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.43 E-value=38 Score=33.05 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=85.2
Q ss_pred ceeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE-cCCC
Q 004739 21 CVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRF 96 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~---~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd-~~~~ 96 (732)
.+...++++|++.+|... ....++++. .+.....+..+ ..+..-.|+++ +...+....+...+++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--CccccccccCC--CCEEEEEcCCCceEEEEecCCC
Confidence 788999999999777655 233455554 33333333222 36788899998 46666666666677774 2222
Q ss_pred CCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEE--eCCCcEEEEECCCCCCC-CCCCCCCcccceEEeeccCC
Q 004739 97 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGSSC-PPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~--s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (732)
.... +..- ..-...|..+.++|++.+..+.. ..++.|.+=-+.....- ... +.
T Consensus 99 ~~~~--------~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~----------l~----- 155 (253)
T PF10647_consen 99 TGEP--------VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR----------LT----- 155 (253)
T ss_pred ccee--------EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----------ec-----
Confidence 2111 1111 11112899999999775554444 23467777665443311 000 00
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCC
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD 206 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d 206 (732)
..+.........+.+++|.++ ..+++.+...
T Consensus 156 --~~~~~~~~~~~~v~~v~W~~~-~~L~V~~~~~ 186 (253)
T PF10647_consen 156 --GPRRVAPPLLSDVTDVAWSDD-STLVVLGRSA 186 (253)
T ss_pred --cceEecccccCcceeeeecCC-CEEEEEeCCC
Confidence 001111122347899999998 5565555443
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=85.10 E-value=79 Score=36.41 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=52.3
Q ss_pred eeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004739 598 IKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 670 (732)
Q Consensus 598 i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~ 670 (732)
+.-+.| +|++||.-. ..|++|++.+++.++.=..|...++.+...-.+..++.|.-=+.|-+--.+..
T Consensus 833 ~aL~~f---ngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 833 YALVEF---NGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eehhhh---CCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 444555 889988654 57999999999888888889999999999998998888876665554444333
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.48 E-value=15 Score=40.64 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=48.2
Q ss_pred CccceEEEEec--CCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004739 183 QTLSLKSCDIS--STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 183 ~~~~v~~i~~~--~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g 260 (732)
....|.++.|. |+ +..+++.|....|.+|-.......... ++......... ..+...+|.+..|.++|
T Consensus 71 ~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q~R~dy~~~~-------p~w~~i~~i~i--~~~T~h~Igds~Wl~~G 140 (631)
T PF12234_consen 71 EDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQLRYDYTNKG-------PSWAPIRKIDI--SSHTPHPIGDSIWLKDG 140 (631)
T ss_pred CCCceeeceeeecCC-CCEEEEEEcCcEEEEEEccchhhhcCC-------cccceeEEEEe--ecCCCCCccceeEecCC
Confidence 34478888885 55 667777788899999965321111110 01111111111 22333368899999999
Q ss_pred CEEEEEecCCeEEEEECCC
Q 004739 261 EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 261 ~~l~~~~~dg~v~iwd~~~ 279 (732)
..++++ ++++.|++-.-
T Consensus 141 ~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 141 TLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred eEEEEe--CCEEEEECCCc
Confidence 744443 45788887543
No 418
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=84.29 E-value=2 Score=42.98 Aligned_cols=58 Identities=9% Similarity=0.123 Sum_probs=45.3
Q ss_pred cEEEEEcCcccEEEEEecCcccEEEEeecCCCC-eEEEe-cCCCcEEEEcCCCCCCccccC
Q 004739 619 RWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATS-GIDNTIKIWTPSASVPSIVSG 677 (732)
Q Consensus 619 ~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~-~l~S~-s~D~~i~vW~~~~~~~~~~~~ 677 (732)
.|-++|+++++.++++.. ...+.+++.+.+.+ +|... ..++.|.|||..+++.+....
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 467779999999999985 34688999999886 77654 568999999999999887654
No 419
>PHA03098 kelch-like protein; Provisional
Probab=83.92 E-value=26 Score=38.80 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEEEcCCCC
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRFS 97 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vwd~~~~~ 97 (732)
+++.++.||.+ ..+..||..+.+....-...+...-.+++.. + +.+++.|+.+ ..+..||+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 56677777764 3577788877654321100111111122222 2 3677777632 357888887643
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.90 E-value=0.2 Score=51.24 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=93.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
.-....|-|.+.-|+.++.+..+..|| +.++..... ..++....++|..+. +..++.+-..+.+.+||+.+..-..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhh-hhcceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhhHHH
Confidence 334567788777788888999999999 445544444 345667788898864 3556666778999999998632111
Q ss_pred CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004739 101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180 (732)
Q Consensus 101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (732)
+..--.|.... +.|++ +...++.+...|.+.+++..+.+... ..
T Consensus 112 --------LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii-------------------------v~ 155 (615)
T KOG2247|consen 112 --------LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII-------------------------VM 155 (615)
T ss_pred --------HhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh-------------------------hh
Confidence 11111122222 67887 55677778888999999987765321 11
Q ss_pred CCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFA 209 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v 209 (732)
..|...++++++.+. + +.+.++.|..+
T Consensus 156 Gkh~RRgtq~av~lE-d-~vil~dcd~~L 182 (615)
T KOG2247|consen 156 GKHQRRGTQIAVTLE-D-YVILCDCDNTL 182 (615)
T ss_pred cccccceeEEEeccc-c-eeeecCcHHHH
Confidence 224446777777775 2 55555555443
No 421
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.82 E-value=62 Score=34.12 Aligned_cols=164 Identities=8% Similarity=0.066 Sum_probs=87.5
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe---cC-CCcEEEEEeCCCcEEEEECCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE---VG-NPHVVWSASEDGTLRQHDFRQGSS 151 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---p~-~~~~l~s~s~dg~i~vwd~~~~~~ 151 (732)
...|+.|+..|.++||+......+.. ..+.. ..-..+|..+..- +. +...||.- .-..+.+|.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~-----~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE-----DLLLE-TQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDG 109 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc-----cEEEE-EecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCC
Confidence 36899999999999999964321210 11122 2245678777653 21 22344443 346788888733221
Q ss_pred CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC-CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004739 152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 230 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 230 (732)
. ...+..-....++... ............|-.. +..++.+-+.||.+.+|+-+...-
T Consensus 110 ~--~~~g~~~~L~~~yeh~---------l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----------- 167 (418)
T PF14727_consen 110 T--VEHGNQYQLELIYEHS---------LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----------- 167 (418)
T ss_pred C--cccCcEEEEEEEEEEe---------cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-----------
Confidence 0 0000000011111100 0111112222223222 136888899999999999875321
Q ss_pred CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+.+..+. .-.+.|.+....+++++.+..|..|....
T Consensus 168 ---~~~lp~~ll--------PgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 168 ---SRFLPDFLL--------PGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred ---EEEcCCCCC--------CcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 112222111 22378888888999999999999997655
No 422
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.82 E-value=2.6 Score=46.74 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=44.2
Q ss_pred CCCCEEEEecCCCcEEEEEcCc----ccE-EEEEecC---------------------cccEEEEeecC----CCCeEEE
Q 004739 606 QRGDYIASGSDDGRWFIWEKQT----GRL-IKMLLGD---------------------EAVVNCVQCHP----FDCVVAT 655 (732)
Q Consensus 606 ~dg~~lasgs~Dg~i~iWd~~t----g~~-~~~l~gH---------------------~~~V~~v~fsp----~~~~l~S 655 (732)
++...|+.+..||.+....... +.. ...+... ...+.+++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3556677777788777776654 221 1122111 24577777877 6779999
Q ss_pred ecCCCcEEEEcCCCCCCcccc
Q 004739 656 SGIDNTIKIWTPSASVPSIVS 676 (732)
Q Consensus 656 ~s~D~~i~vW~~~~~~~~~~~ 676 (732)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 423
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.12 E-value=47 Score=35.00 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=89.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe-----eEEEEccCCCcCeEEEEEe---cCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV---PETSDELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~h~~~V~~~~~s---~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
...+++|+..|.++|++..... .+.+ ..-+.+|..++.- +.. ....++.-.-..+.||.+....+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE--~~l~~PILqv~~G~F~s~~-~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE--TQLKDPILQVECGKFVSGS-EDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE--EecCCcEEEEEeccccCCC-CcceEEEecCCEEEEEEEEecCCCccc
Confidence 3589999999999999986543 2222 2345778777643 333 233444467788999998654333111
Q ss_pred CCCCCCceeeccccCc--eeEEEEecC----CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 103 DNAITPSALYQCHTRR--VKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~--v~~l~~~p~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
... ..+..+..|.-. ...+.+-|- +..+|..=+.||.+.+++-+.-.. .
T Consensus 114 g~~-~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----------------~-------- 168 (418)
T PF14727_consen 114 GNQ-YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----------------S-------- 168 (418)
T ss_pred CcE-EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----------------E--------
Confidence 111 112333344433 223333232 236788889999999998655320 0
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
...++ .--...+.+.+. ...|++++.+..|..|....
T Consensus 169 -~~lp~-~llPgPl~Y~~~-tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 169 -RFLPD-FLLPGPLCYCPR-TDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred -EEcCC-CCCCcCeEEeec-CCEEEEecCceeEEEecHHH
Confidence 00000 001123567776 66899999998999987643
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.75 E-value=40 Score=35.53 Aligned_cols=126 Identities=10% Similarity=0.111 Sum_probs=75.9
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCC-------EEEEEeCCCcEEEEeCC-CCeeEEEEc-c--CCCcCeEEEEEecCC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGS-------LLISGSDDTHINVWSYS-SRKLLHSIE-T--GHSANVFCTKFVPET 74 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~-------~lasg~~dg~i~vWd~~-~~~~~~~~~-~--~h~~~V~~~~~s~~~ 74 (732)
+.+++++.++.-|.+- -+.|.|+.+ .-+.|-.+..|.-.|.+ .|..+.... . .-+....|..-...
T Consensus 497 IErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTes- 573 (776)
T COG5167 497 IERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTES- 573 (776)
T ss_pred cccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccccC-
Confidence 4567788888877665 577888432 23345556666666765 332222220 1 11222233332233
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
.+++.++..|-|++||--... ....+.+....|..|..+.+|..+|+||- ..+.+-|+.-
T Consensus 574 --GyIa~as~kGDirLyDRig~r----------AKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 574 --GYIAAASRKGDIRLYDRIGKR----------AKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred --ceEEEecCCCceeeehhhcch----------hhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 699999999999999854211 12345666788999999997755555543 5788888754
No 425
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.59 E-value=40 Score=31.11 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 30 KGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~--dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
+|.++.+.+. ...|++||+.+++.+....-. ...+..=-...-+ +....-.-.+|.-..+|.++.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~g-d~~y~LTw~egvaf~~d~~t~ 121 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLG-DYFYQLTWKEGVAFKYDADTL 121 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-Cccccccceeecc-ceEEEEEeccceeEEEChHHh
Confidence 5566666653 457999999999887665222 1223222122221 123333456888888988863
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=82.42 E-value=36 Score=36.97 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC---cEEEEEcCCC
Q 004739 30 KGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg---~i~vwd~~~~ 96 (732)
+|...+.||.+ .++..||..+++....-.-.....-.+++.. + |.+.+.|+.++ .+..||..+.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-~--g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-N--NVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-C--CEEEEecCcCCCCccEEEEeCCCC
Confidence 56666777753 3578888776644322100111111122222 3 36777777653 4678888753
No 427
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.23 E-value=4.3 Score=43.26 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=45.4
Q ss_pred ccCCCCEEEEe-----cCCCcEEEEEcCcccEEEEE-ecCcccEEEEeecCCCCeEEEecCCC-----------cEEEEc
Q 004739 604 LGQRGDYIASG-----SDDGRWFIWEKQTGRLIKML-LGDEAVVNCVQCHPFDCVVATSGIDN-----------TIKIWT 666 (732)
Q Consensus 604 ~s~dg~~lasg-----s~Dg~i~iWd~~tg~~~~~l-~gH~~~V~~v~fsp~~~~l~S~s~D~-----------~i~vW~ 666 (732)
+||||++||-+ +...+|++.|+++|+.+..- .+ ... ..+.|.++++.|+-...|. .|+.|.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-ccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 59999999853 34456999999999877633 32 211 2399999998655554333 378888
Q ss_pred CCCCCC
Q 004739 667 PSASVP 672 (732)
Q Consensus 667 ~~~~~~ 672 (732)
+.+...
T Consensus 209 ~gt~~~ 214 (414)
T PF02897_consen 209 LGTPQS 214 (414)
T ss_dssp TTS-GG
T ss_pred CCCChH
Confidence 877654
No 428
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=82.11 E-value=34 Score=35.69 Aligned_cols=131 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred eeEEEEcCCCCEEEEEeC--------------------CCcEEEEeCCCCeeEEEEccCCCc-CeEEEEEecCCCCC-EE
Q 004739 22 VNAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDE-LV 79 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~--------------------dg~i~vWd~~~~~~~~~~~~~h~~-~V~~~~~s~~~~g~-~l 79 (732)
-+.+-|.|..+.++|... -.++.+||+.+.+.++++--+.++ .+..+.|..+.... -+
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 445677787778887642 357999999999999998545444 46788887653222 34
Q ss_pred EEEECCCcEEEEEc-CCCCCCC---CC--------CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 004739 80 VSGAGDAEVRLFNL-SRFSGRG---LD--------DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR 147 (732)
Q Consensus 80 ~s~~~dg~i~vwd~-~~~~~~~---~~--------~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~ 147 (732)
+.+.-..+|..|-- +.+.-.. .. ..-...++.+..-..-|+.|..+.|+.-+.+++=.+|.|+.||+.
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 44444555554433 2111000 00 000011122222245689999999875555667779999999998
Q ss_pred CCCCC
Q 004739 148 QGSSC 152 (732)
Q Consensus 148 ~~~~~ 152 (732)
....+
T Consensus 343 DP~~P 347 (461)
T PF05694_consen 343 DPFNP 347 (461)
T ss_dssp STTS-
T ss_pred CCCCC
Confidence 87643
No 429
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.35 E-value=91 Score=34.33 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeE---E-------EEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF---C-------TKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~---~-------~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
+..|+.++.++.|+-.|..+|+.+-++...-...+. + +++. +..++.++.|+.|.-.|.++++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCC
Confidence 456777777889999999999988877322111111 1 1222 2467777889999999988754
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.73 E-value=62 Score=32.01 Aligned_cols=229 Identities=10% Similarity=0.065 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCC------CC-eeEEEEcc--C--CCcCeEEEEEecCC----------CCCEEE
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYS------SR-KLLHSIET--G--HSANVFCTKFVPET----------SDELVV 80 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~------~~-~~~~~~~~--~--h~~~V~~~~~s~~~----------~g~~l~ 80 (732)
-..|+|+|.+.+-++...-+...+||.. .. ..+..+.. + .....+.+.|+..+ ....++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4579999999888888778899999986 22 22333321 1 23467888887542 012367
Q ss_pred EEECCCcEEEEEcCCCCCCCCCCCCCCCceeec-c-ccCceeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004739 81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-C-HTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAG 156 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 156 (732)
.+++||+|.-|.......... .....+. . .......+++.+. +..+.++=-..++|.++|-.-.+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--- 176 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--- 176 (336)
T ss_pred EEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC---
Confidence 788999999998643211000 0011111 1 1223445666542 32444455567899999854432110
Q ss_pred CCCcccceEEeeccCCccc-cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004739 157 SSHQECRNILLDLRCGAKR-SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 235 (732)
.+...... +..+-.. -+.. .+....|+-..-.++ .+.=+.|..-|.|-+||+.- ..++.+..
T Consensus 177 ~g~F~DP~----iPagyAPFnIqn-ig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G-~l~~r~as---------- 239 (336)
T TIGR03118 177 PGSFIDPA----LPAGYAPFNVQN-LGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNG-QLLRRVAS---------- 239 (336)
T ss_pred CCCccCCC----CCCCCCCcceEE-ECCeEEEEEEecCCc-ccccccCCCcceEEEEcCCC-cEEEEecc----------
Confidence 00000000 0000000 0000 011112333333443 33344455567899998863 22322211
Q ss_pred ccccccccCCCccccEEEEEEcC------CCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp------~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
.+.-+ ..+.|+..| .|.+|+.--.||+|..||..++...-
T Consensus 240 --------~g~LN-aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 240 --------SGRLN-APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred --------CCccc-CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 22222 356777766 46666666669999999998876443
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=80.00 E-value=45 Score=34.74 Aligned_cols=109 Identities=10% Similarity=0.048 Sum_probs=55.7
Q ss_pred CceeEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Ce--eEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 20 GCVNAISWNSKGSLLISGS-----------DDT-HINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~-----------~dg-~i~vWd~~~--~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+ ...-.....+++.++ | ++++ .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~~l~~p~Gi~~~~~--G-lyV~-~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AEELSMVTGLAVAVG--G-VYVA-T 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ecCCCCccceeEecC--C-EEEe-C
Confidence 4566899999999877642 223 677776443 33 22334 223345688999887 4 4444 4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeecc----ccCceeEEEEecCCCcEEEEEe
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~s~s 136 (732)
.....++.|... .+... ......+..+.. +......++|.|++ .+.++-+
T Consensus 89 ~~~i~~~~d~~g-dg~ad-~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 89 PPDILFLRDKDG-DDKAD-GEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CCeEEEEeCCCC-CCCCC-CccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 443333334431 11110 000001111221 12447789999965 5555544
No 432
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.64 E-value=37 Score=40.19 Aligned_cols=172 Identities=18% Similarity=0.223 Sum_probs=90.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCC------CEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD------ELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g------~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
++.-+| -|+.+.+|+.+++.....+ .+-...|..+..-.-..| ++++.-+.--.|.++-+..........
T Consensus 91 ~RaWiT--iDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~- 166 (1311)
T KOG1900|consen 91 GRAWIT--IDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS- 166 (1311)
T ss_pred cceEEE--eCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc-
Confidence 444444 4788999999998777777 677777877765432111 233333334456666544221111000
Q ss_pred CCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEeecc--CCccccccCC
Q 004739 105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLR--CGAKRSLADP 180 (732)
Q Consensus 105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 180 (732)
.+.-...+.-....|+++.... +|+.|++| .||. +|.+. ....-.. ..|.++..... ..-...+...
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G-~dg~--lyEl~Yq~~~gWf~-----~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTE-NGRIFFAG-RDGN--LYELVYQAEDGWFG-----SRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred ccccceeeecCCceEEEEEecc-CCcEEEee-cCCC--EEEEEEeccCchhh-----cccccccCchhHHHHhhhhhhcC
Confidence 0000112223356788888554 66777665 4554 44432 1110000 00000000000 0001112222
Q ss_pred C-CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 181 P-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 181 ~-~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
+ .+..+|..+..... ...+.+-+..|+|++||+..
T Consensus 238 ~~~~~dpI~qi~ID~S-R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNS-RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCcceeeEeccc-cceeeeeccCceEEEEEccC
Confidence 2 45668999999887 67899999999999999976
No 433
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.27 E-value=72 Score=31.34 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=98.3
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCcee--eccccCceeEEEEecCCCcEEEEEe
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL--YQCHTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~~l~s~s 136 (732)
.+-...|.++.|+|+. +.|++......-.||=...++ . +.+ +.+ -.....|.+.. ++++.++--
T Consensus 82 ~g~~~nvS~LTynp~~--rtLFav~n~p~~iVElt~~Gd--l--------irtiPL~g-~~DpE~Ieyig-~n~fvi~dE 147 (316)
T COG3204 82 LGETANVSSLTYNPDT--RTLFAVTNKPAAIVELTKEGD--L--------IRTIPLTG-FSDPETIEYIG-GNQFVIVDE 147 (316)
T ss_pred ccccccccceeeCCCc--ceEEEecCCCceEEEEecCCc--e--------EEEecccc-cCChhHeEEec-CCEEEEEeh
Confidence 3555669999999995 777777766666666444322 1 222 223 22344567766 446777777
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.++.+.++.+....... ..... ...+....+.......++|+|. .+.|..+=.-.-+.||....
T Consensus 148 R~~~l~~~~vd~~t~~~--------------~~~~~-~i~L~~~~k~N~GfEGlA~d~~-~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 148 RDRALYLFTVDADTTVI--------------SAKVQ-KIPLGTTNKKNKGFEGLAWDPV-DHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred hcceEEEEEEcCCccEE--------------eccce-EEeccccCCCCcCceeeecCCC-CceEEEEEccCCcEEEEEec
Confidence 78888888876654211 00000 1122222333557789999999 45666665556677776653
Q ss_pred CC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC-CEEEEEecCCeEEEEECCC
Q 004739 217 LP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~ 279 (732)
.. .+... . ...+... ..-.-..|.++.|++.. ..|+.+..++.+.-.|...
T Consensus 212 ~~~~l~~~---~-------~~~~~~~--~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 212 SPSSLSVH---A-------SLDPTAD--RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCcccccc---c-------ccCcccc--cceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 22 11100 0 0000000 00001137788898754 4555555577777777665
No 434
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.26 E-value=88 Score=34.44 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEEEecC
Q 004739 607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 637 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH 637 (732)
.|.+++.|+.||.++.+|.+||+.+...+-.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4567778899999999999999999888764
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.40 E-value=42 Score=37.65 Aligned_cols=118 Identities=13% Similarity=0.167 Sum_probs=75.7
Q ss_pred CceeEEEEcC--CCCEEEEEeCCCcEEEEeCCC-------C----ee---E----EEEccCCCcCeEEEEEe--cCCCCC
Q 004739 20 GCVNAISWNS--KGSLLISGSDDTHINVWSYSS-------R----KL---L----HSIETGHSANVFCTKFV--PETSDE 77 (732)
Q Consensus 20 ~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~-------~----~~---~----~~~~~~h~~~V~~~~~s--~~~~g~ 77 (732)
..|+-|.... +...|+.+..||.|.+|.+++ . +. . -.+...-...+.+++++ ... +
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~--r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS--R 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc--e
Confidence 3466665543 456888999999999997531 1 00 0 01111234578999998 553 7
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC--Cc---EEEEEeCCCcEEEEEC
Q 004739 78 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN--PH---VVWSASEDGTLRQHDF 146 (732)
Q Consensus 78 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~--~~---~l~s~s~dg~i~vwd~ 146 (732)
+||.++....|.||-+...+.+.. ...-..|...|-+|.|.++. +. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~-------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFY-------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccc-------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888888887664322211 11111266778899998754 22 7778888999999888
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=77.30 E-value=43 Score=31.26 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=64.9
Q ss_pred CEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---C---cEEEE-EcCCC--CCCC
Q 004739 32 SLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---A---EVRLF-NLSRF--SGRG 100 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g---~i~vw-d~~~~--~~~~ 100 (732)
..|+.+...+.|.+|++. ..+.+.+| .--+.|..+.++.. |++|+|-=.+ . .+|+| |.+.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccc--cceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 344443455789999988 34566666 34488999999998 6999986332 2 45664 33321 1111
Q ss_pred CC---------CCC----CCC--ceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 101 LD---------DNA----ITP--SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 101 ~~---------~~~----~~~--~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
.+ ... ... +-.+. -..++.+++..|..|++++. + ++.+.+|.+...
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEEE
Confidence 00 000 000 01111 24578889999987777754 3 368999987654
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.22 E-value=1.5e+02 Score=34.48 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=80.4
Q ss_pred cccCceeEEEEe---c--C-CCcEEEEEeCCCcEEEEECCCCCCCCC--CCCCCcccceEEeeccCCccccccCCCCCcc
Q 004739 114 CHTRRVKKLAVE---V--G-NPHVVWSASEDGTLRQHDFRQGSSCPP--AGSSHQECRNILLDLRCGAKRSLADPPKQTL 185 (732)
Q Consensus 114 ~h~~~v~~l~~~---p--~-~~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (732)
.-..+|..|.|. . + ..++|++ -....+.|+...-.+.... ....+. ....+..+ ....-...
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i-~~~~l~~i--------~~~~tgg~ 146 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRI-DPNPLLTI--------SSSDTGGF 146 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCcccc-ccceeEEe--------chhhcCCC
Confidence 456789999997 2 1 2235544 4456778887433332000 000000 00111111 11111233
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc-ccCCCccccEEEEEEcCCCCEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTHVTFSPNGEEVL 264 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~ 264 (732)
+...++|+|.....||+....|...|||+........-........+ ..+ ...... .....+.|.++...|+
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~------gsi~~d~~e~-s~w~rI~W~~~~~~lL 219 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS------GSIIFDPEEL-SNWKRILWVSDSNRLL 219 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCC------ccccCCCccc-CcceeeEecCCCCEEE
Confidence 66789999988889999999999999999322211111000000000 011 111111 2367899999888777
Q ss_pred EEecCCeEEEEECCCCCC
Q 004739 265 LSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 265 ~~~~dg~v~iwd~~~~~~ 282 (732)
+.+. ..+.++|+.+...
T Consensus 220 v~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 220 VCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred EEcC-CceEEEECCCCCc
Confidence 7765 4788899988654
No 438
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.03 E-value=13 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=20.6
Q ss_pred eeccCCceeEEEEcCCCCEEEEEe-CC--CcEEEE
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGS-DD--THINVW 46 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~-~d--g~i~vW 46 (732)
+......-....|||||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556677899999999777554 44 555555
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.71 E-value=18 Score=37.31 Aligned_cols=98 Identities=8% Similarity=0.125 Sum_probs=67.3
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc---cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~---~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
..++|.++.||+|.+.||+--.|++|.+.+....+...... +.....|.+..|+.+ .-++--...| +-+|-+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS---TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC---eeEEEEecCC-eEEEEEc
Confidence 46799999999999999999999999999974333222111 123355889999887 3455444444 6666654
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCC
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 128 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~ 128 (732)
... ..++..+.|+..|+-..|+++.
T Consensus 141 pek---------rslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 141 PEK---------RSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hhh---------hhhhhhhhcccCccEEEEcccc
Confidence 321 2255667788889999999854
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.62 E-value=45 Score=31.14 Aligned_cols=126 Identities=12% Similarity=0.107 Sum_probs=65.3
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC------cEEE---EECC
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG------TLRQ---HDFR 147 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg------~i~v---wd~~ 147 (732)
+.|+.+...+.|.+|++..... .++..+.. -+.|..+.++.. +++++|--.+. .+|+ |+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~--------~~~~~F~T-v~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC--------PLLCTFST-VGRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC--------ceeEEEcc-hhheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhh
Confidence 3444446678899999984332 23555554 478999999984 58998875432 4555 3333
Q ss_pred CCC-CCCC-CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 148 QGS-SCPP-AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 148 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
..+ .... ...++.-..... -..+....+.+.+- ...+.+++..|..|++++ |+ ++.+.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~--~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFN--ESSKDQLEIIELPL-SEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCC--CccccceEEEEecC-CCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEE
Confidence 111 1100 001110000000 00000112222222 336678888888676554 43 568999987643
No 441
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.47 E-value=1.6e+02 Score=33.99 Aligned_cols=67 Identities=7% Similarity=0.053 Sum_probs=44.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCc-------CeEEEEEecC--------------CCCCEEEEEECCCcEE
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSA-------NVFCTKFVPE--------------TSDELVVSGAGDAEVR 89 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~-------~V~~~~~s~~--------------~~g~~l~s~~~dg~i~ 89 (732)
+..|..++.++.|.-.|..+|+.+-++...... ....+.+... ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999998887321110 0122333211 1135788888899999
Q ss_pred EEEcCCCC
Q 004739 90 LFNLSRFS 97 (732)
Q Consensus 90 vwd~~~~~ 97 (732)
-.|.++++
T Consensus 274 ALDA~TGk 281 (764)
T TIGR03074 274 ALDADTGK 281 (764)
T ss_pred EEECCCCC
Confidence 88988754
No 442
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.10 E-value=50 Score=39.31 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSS 50 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~ 50 (732)
.....++|+|...++|.|...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4566789999999999999999999997543
No 443
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.85 E-value=15 Score=23.61 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeeEEEEc
Q 004739 29 SKGSLLISGS-DDTHINVWSYSSRKLLHSIE 58 (732)
Q Consensus 29 ~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~ 58 (732)
|++++|.++. .+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5677666554 57899999999998888873
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=74.56 E-value=1.1e+02 Score=31.44 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=80.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEE-EeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~v-Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
...+.++.+.|++.+++++. .|.+.. +| ..++.-......-...++++.+.++ +..++. +..|.+.+=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~--g~~~~v-g~~G~~~~~s~d~-- 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPD--GNLWML-ARGGQIRFNDPDD-- 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCC--CCEEEE-ecCCEEEEccCCC--
Confidence 35688899999987777664 455443 22 2222222222345578899999998 355555 4567664322221
Q ss_pred CCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 98 GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
+... ..+..- ..-...+.++.+.|++ ..+ .++.+|.|. .....++.- ..
T Consensus 245 G~sW-----~~~~~~~~~~~~~l~~v~~~~~~-~~~-~~G~~G~v~-~S~d~G~tW----------------------~~ 294 (334)
T PRK13684 245 LESW-----SKPIIPEITNGYGYLDLAYRTPG-EIW-AGGGNGTLL-VSKDGGKTW----------------------EK 294 (334)
T ss_pred CCcc-----ccccCCccccccceeeEEEcCCC-CEE-EEcCCCeEE-EeCCCCCCC----------------------eE
Confidence 1111 101100 0112357788888843 544 455667654 333333311 00
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
+..........+.+.|..+ .+.++ .+..|.|--|+-
T Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 295 DPVGEEVPSNFYKIVFLDP-EKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCcCCCCCcceEEEEEeCC-CceEE-ECCCceEEEecC
Confidence 1000111225677777765 44444 556788877753
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.42 E-value=1.3e+02 Score=34.87 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=32.3
Q ss_pred CCCEEEE-ecCCCcEEEEEcCcccEEEEEecC----cccEEEEeec-CCCC-eEEE
Q 004739 607 RGDYIAS-GSDDGRWFIWEKQTGRLIKMLLGD----EAVVNCVQCH-PFDC-VVAT 655 (732)
Q Consensus 607 dg~~las-gs~Dg~i~iWd~~tg~~~~~l~gH----~~~V~~v~fs-p~~~-~l~S 655 (732)
.|.+++. |..|+.++-+|.+||+.+.+.+-- ..+++ +. .+|+ |+|.
T Consensus 690 agglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~t---Y~~~~GkQYVvi 742 (764)
T TIGR03074 690 AGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMT---YMGKDGKQYVVI 742 (764)
T ss_pred cCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEE---EEecCCEEEEEE
Confidence 4566765 789999999999999999877642 33333 44 4776 5443
No 446
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.33 E-value=88 Score=30.38 Aligned_cols=193 Identities=7% Similarity=0.036 Sum_probs=112.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
..-..++-.|||..-.++...+.|---|..+|+....- -+....-..|..-|++ ..-++=+.. -|.-.|.++....
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg--~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDG--SAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCC--CeeEecCcc-eeEEecCcccceE
Confidence 34456777888888888877777877888888876554 4666666778888884 444443222 3444444432111
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC---------CCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
. .+ .....-........|.+.+ ++-+++.. .+.|++|+...+.
T Consensus 138 ~------f~-lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------------- 189 (353)
T COG4257 138 R------FP-LPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------------- 189 (353)
T ss_pred E------ee-cccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccCCCC--------------------
Confidence 0 00 1122224567777888854 66666642 1345555544332
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
.-+.|+..|+ |...++.-.++.|-..|..+... ..+ ..| ..... .
T Consensus 190 ---------------gpyGi~atpd-Gsvwyaslagnaiaridp~~~~a-ev~----p~P-------------~~~~~-g 234 (353)
T COG4257 190 ---------------GPYGICATPD-GSVWYASLAGNAIARIDPFAGHA-EVV----PQP-------------NALKA-G 234 (353)
T ss_pred ---------------CCcceEECCC-CcEEEEeccccceEEcccccCCc-cee----cCC-------------Ccccc-c
Confidence 4567888898 67777777777787777765521 111 000 11011 1
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
-..+--+|.|+.-++-...+.+..||...
T Consensus 235 sRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 235 SRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccccccCccCcEEEeccCCceeeEeCccc
Confidence 34455577787777766677888887765
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.87 E-value=13 Score=23.68 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=20.5
Q ss_pred EEecCcccEEEEeecCCCCeEE-EecCC--CcEEEE
Q 004739 633 MLLGDEAVVNCVQCHPFDCVVA-TSGID--NTIKIW 665 (732)
Q Consensus 633 ~l~gH~~~V~~v~fsp~~~~l~-S~s~D--~~i~vW 665 (732)
++.-....-....|||||++|+ ++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344556778899999998544 44455 666665
No 448
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.24 E-value=7.6 Score=23.52 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=21.6
Q ss_pred CEEEEecCCCcEEEEEcCcccEEEEE
Q 004739 609 DYIASGSDDGRWFIWEKQTGRLIKML 634 (732)
Q Consensus 609 ~~lasgs~Dg~i~iWd~~tg~~~~~l 634 (732)
..|..++.+|.+...|.++|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35777888999999999999987654
No 449
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=72.88 E-value=1.9e+02 Score=33.58 Aligned_cols=179 Identities=12% Similarity=0.133 Sum_probs=99.5
Q ss_pred cEEEEeCCCCeeEEEEccCCCc---CeEEEEEecCCCCCEEEEEEC----------CCcEEEEEcCCCCCCCCCCCCCCC
Q 004739 42 HINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG----------DAEVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 42 ~i~vWd~~~~~~~~~~~~~h~~---~V~~~~~s~~~~g~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
.++++|-++.+.++........ .|.++.|..+. +.+++.|.. .|.|.|+.+...+. .+.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~-~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-------L~~ 822 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDP-NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-------LEL 822 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCC-ceEEEEEEEeeccCCCCcccceEEEEEEecCCc-------eee
Confidence 4778887777766544222222 34555688875 577777742 47788887765111 011
Q ss_pred ceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004739 109 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 188 (732)
Q Consensus 109 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (732)
+.... -.+.+.++..- +++++|.- +..|++|++.+.+.+ ..--.+...+.
T Consensus 823 v~e~~-v~Gav~aL~~f--ngkllA~I--n~~vrLye~t~~~eL-------------------------r~e~~~~~~~~ 872 (1096)
T KOG1897|consen 823 VAETV-VKGAVYALVEF--NGKLLAGI--NQSVRLYEWTTEREL-------------------------RIECNISNPII 872 (1096)
T ss_pred eeeee-eccceeehhhh--CCeEEEec--CcEEEEEEcccccee-------------------------hhhhcccCCeE
Confidence 22222 23455555432 44666544 468999999887532 11112233566
Q ss_pred EEEecCCCCCEEEEEeCCCeEEEEECCCCCC-CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004739 189 SCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 267 (732)
Q Consensus 189 ~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~ 267 (732)
.+...-. +..+++|..-+.+.+.-.+..+- +... .+ .-+ ..+.+++.+-.+. ..+.+.
T Consensus 873 aL~l~v~-gdeI~VgDlm~Sitll~y~~~eg~f~ev---------Ar---------D~~-p~Wmtaveil~~d-~ylgae 931 (1096)
T KOG1897|consen 873 ALDLQVK-GDEIAVGDLMRSITLLQYKGDEGNFEEV---------AR---------DYN-PNWMTAVEILDDD-TYLGAE 931 (1096)
T ss_pred EEEEEec-CcEEEEeeccceEEEEEEeccCCceEEe---------eh---------hhC-ccceeeEEEecCc-eEEeec
Confidence 6666665 67899998877777655543321 1000 00 011 1257777766544 456666
Q ss_pred cCCeEEEEECCC
Q 004739 268 SGEHVYLMDVNH 279 (732)
Q Consensus 268 ~dg~v~iwd~~~ 279 (732)
.+|.+.+-...+
T Consensus 932 ~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 932 NSGNLFTVRKDS 943 (1096)
T ss_pred ccccEEEEEecC
Confidence 788888776654
No 450
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.64 E-value=1.7e+02 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=38.1
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
..|+|++. +|+.+.++.-.|. .+..+.|+.+ ..|+....+|+++||++-.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~---eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDD---EELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-CeeeecccCC---ceEEEEeccceEEEeecch
Confidence 45888884 4666666533454 7889999998 5788889999999999863
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=72.01 E-value=35 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.2
Q ss_pred cEEEEEEcCCC------CEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNG------EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g------~~l~~~~~dg~v~iwd~~~ 279 (732)
.+.+++|||-| -.|++.+.+|.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58999999943 3677778899999997664
No 452
>PRK10115 protease 2; Provisional
Probab=70.87 E-value=2e+02 Score=32.98 Aligned_cols=73 Identities=4% Similarity=-0.006 Sum_probs=45.9
Q ss_pred CceeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEE
Q 004739 20 GCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVR 89 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~-----dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~ 89 (732)
-.+..+.|+|||++|+-+.. ...|++-|+.+++.+.....+ . -..++|++++ ..++++...+ ..|.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~-~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDS-WTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCC-CEEEEEEecCCCCCCCEEE
Confidence 34667899999998886632 235888999888644333111 1 2569999985 2344444322 3567
Q ss_pred EEEcCCC
Q 004739 90 LFNLSRF 96 (732)
Q Consensus 90 vwd~~~~ 96 (732)
.+++.+.
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 7777764
No 453
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.59 E-value=21 Score=36.87 Aligned_cols=173 Identities=15% Similarity=0.073 Sum_probs=96.6
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE-EEEccCCCc----CeE-EEEEecCCCCCEEEEEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHSA----NVF-CTKFVPETSDELVVSGA 83 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~-~~~~~~h~~----~V~-~~~~s~~~~g~~l~s~~ 83 (732)
+.++.|..-...|..+-..|||+.|..-+. ..+.|+++.+.... .++.....+ .|+ .+..... |.-+..+.
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G--g~SLLv~~ 287 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG--GFSLLVVH 287 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC--ceeEEEEc
Confidence 344456566778888999999997776544 57888887654321 122111111 122 1111222 46788888
Q ss_pred CCCcEEEE-EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 84 GDAEVRLF-NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 84 ~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
.||-|.-| |++...+.. ...++.++-...++..+.-. ++.+-+++-...|++.++.....+..
T Consensus 288 ~dG~vsQWFdvr~~~~p~-----l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~l---------- 351 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPH-----LNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLL---------- 351 (733)
T ss_pred CCCceeeeeeeecCCCCc-----ceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcce----------
Confidence 99998887 555432211 12222232222333333222 23456778888888888765544321
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
...+ ....+.-++++|. +.+|++- ..|.++++.+.+..+
T Consensus 352 ---------------L~~~-~~~~~~~~~~Sp~-~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 352 ---------------LFER-AYQAPQLVAMSPN-QAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ---------------ehhh-hhcCcceeeeCcc-cchheee-cCCceEEEEecCCCC
Confidence 0000 1114456789998 5666664 457899999887643
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.33 E-value=69 Score=27.42 Aligned_cols=111 Identities=7% Similarity=0.124 Sum_probs=67.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCe--------eEEEEccCCCcCeEEEEEec---CCCCCEEEEEECCCcEEEEE
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVP---ETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~--------~~~~~~~~h~~~V~~~~~s~---~~~g~~l~s~~~dg~i~vwd 92 (732)
.-.|......|+.+..-|+|.|.+..... .+..+ .-...|++++--+ +...+.|+.|+ ...|..||
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 44566666678888888999999876432 23333 3445677775443 33246777766 56789999
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CCcEEEEEeCCCcEEEEECCCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
+..... ..++.-.+.|+++.+-.- ...+++. +.+..|.-+|....
T Consensus 80 V~~N~d-----------~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VENNSD-----------LFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGN 127 (136)
T ss_pred cccCch-----------hhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCc
Confidence 986432 223344577777776321 2234444 44577777776544
No 455
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=69.66 E-value=63 Score=34.44 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=24.9
Q ss_pred cceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 185 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 185 ~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
..|.++...+. .+.+++-..+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPS-RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETT-TTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCC-cCEEEEEeCCCcEEEEEEeC
Confidence 34899999998 58999999999999999975
No 456
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.00 E-value=62 Score=32.05 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=59.6
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE------CCCcEEEEEcCCCCCCCCCCCCCCCcee-e-
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA------GDAEVRLFNLSRFSGRGLDDNAITPSAL-Y- 112 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~- 112 (732)
..|++||..+.+...-- .+-.+.|+++.|..+ .++++.|. ....+..||+.+..-.. +.. .
T Consensus 16 ~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~--~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~--------~~~~~s 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG-NGISGTVTDLQWASN--NQLLVGGNFTLNGTNSSNLATYDFKNQTWSS--------LGGGSS 84 (281)
T ss_pred CEEEEEECCCCEeecCC-CCceEEEEEEEEecC--CEEEEEEeeEECCCCceeEEEEecCCCeeee--------cCCccc
Confidence 45999998877665443 456788999999865 36777764 34568889988643211 111 0
Q ss_pred ccccCceeEEEEecCCC-cEEEEEe-CCC--cEEEEECCCCC
Q 004739 113 QCHTRRVKKLAVEVGNP-HVVWSAS-EDG--TLRQHDFRQGS 150 (732)
Q Consensus 113 ~~h~~~v~~l~~~p~~~-~~l~s~s-~dg--~i~vwd~~~~~ 150 (732)
..-.++|..+.+...+. ++.+.|. .++ .|..||=.+-.
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 12246788888755444 3444443 233 46667654443
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=67.23 E-value=1.5e+02 Score=30.20 Aligned_cols=136 Identities=12% Similarity=0.156 Sum_probs=68.1
Q ss_pred cCceeEEEEecCCCcEEEEEeCCCc------EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 116 TRRVKKLAVEVGNPHVVWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 116 ~~~v~~l~~~p~~~~~l~s~s~dg~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
-+.+..|.+.|++ ..+++.+.+|. +...++...... . ..... .....+....-..+ ........+
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~--~--~~~~~-~~~~~L~~~~G~~~---~~~~~D~Eg 89 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGG--I--GGVTI-LDMIPLRDPDGQPF---PKNGLDPEG 89 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCC--c--cceEe-ccceeccCCCCCcC---CcCCCChhH
Confidence 3567889998744 56667788888 666665541100 0 00000 00000000000000 011124557
Q ss_pred EEecCCCCCEEEEEeCC------CeEEEEECCCCCCCcccccCCCCCCccccccccccc-cCCCccccEEEEEEcCCCCE
Q 004739 190 CDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS-EHGRSSLHLTHVTFSPNGEE 262 (732)
Q Consensus 190 i~~~~~~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~sp~g~~ 262 (732)
|++.++ +.++++.=.+ ..|+-++.. ++.+..+..+.. +.+.... .....+..+-+|+++|+|+.
T Consensus 90 i~~~~~-g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~-------~~~~~~~~~~~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 90 IAVPPD-GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA-------FLPDANGTSGRRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred eEEecC-CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccc-------cccccCccccccCCCCeEEEEECCCCCE
Confidence 788555 6677776666 778888876 554444321110 0000000 01122335889999999998
Q ss_pred EEEEecC
Q 004739 263 VLLSYSG 269 (732)
Q Consensus 263 l~~~~~d 269 (732)
|+++...
T Consensus 161 l~~~~E~ 167 (326)
T PF13449_consen 161 LFAAMES 167 (326)
T ss_pred EEEEECc
Confidence 8777553
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.30 E-value=2.1 Score=44.24 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=89.7
Q ss_pred CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004739 64 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ 143 (732)
Q Consensus 64 ~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~v 143 (732)
......|-|.+ .-++.++.+..+..||-... . .... .-++....++|.-+++..++.+-..+.+.+
T Consensus 36 ~pi~~~w~~e~--~nlavaca~tiv~~YD~agq---~--------~le~-n~tg~aldm~wDkegdvlavlAek~~piyl 101 (615)
T KOG2247|consen 36 GPIIHRWRPEG--HNLAVACANTIVIYYDKAGQ---V--------ILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYL 101 (615)
T ss_pred ccceeeEecCC--CceehhhhhhHHHhhhhhcc---e--------eccc-CCchhHhhhhhccccchhhhhhhcCCCeee
Confidence 33455677874 44777777888989986531 1 1111 124455667887766667777888899999
Q ss_pred EECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004739 144 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 223 (732)
Q Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~ 223 (732)
||+.+.... .+.....+.... +.|++. ...++.+...|.++|+...+.+.+..
T Consensus 102 wd~n~eytq-----------------------qLE~gg~~s~sl--l~wsKg-~~el~ig~~~gn~viynhgtsR~iiv- 154 (615)
T KOG2247|consen 102 WDVNSEYTQ-----------------------QLESGGTSSKSL--LAWSKG-TPELVIGNNAGNIVIYNHGTSRRIIV- 154 (615)
T ss_pred chhhhhhHH-----------------------HHhccCcchHHH--HhhccC-CccccccccccceEEEeccchhhhhh-
Confidence 999876421 111111111122 567776 66788888899999999887654332
Q ss_pred ccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC
Q 004739 224 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 270 (732)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg 270 (732)
.|.+...++++++.+.+.. +.++.|.
T Consensus 155 --------------------~Gkh~RRgtq~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 155 --------------------MGKHQRRGTQIAVTLEDYV-ILCDCDN 180 (615)
T ss_pred --------------------hcccccceeEEEeccccee-eecCcHH
Confidence 3322225889999988753 4444443
No 459
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=65.81 E-value=38 Score=30.72 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=27.6
Q ss_pred cEEEEeecCCC------CeEEEecCCCcEEEEcCCCC
Q 004739 640 VVNCVQCHPFD------CVVATSGIDNTIKIWTPSAS 670 (732)
Q Consensus 640 ~V~~v~fsp~~------~~l~S~s~D~~i~vW~~~~~ 670 (732)
.|.+++|||.| .+||....++.|.||.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 79999999965 48999999999999998865
No 460
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.23 E-value=41 Score=34.46 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=38.8
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEE---EE-EecCcccEEEEeecCCCCeEEEecCCCcE
Q 004739 607 RGDYIASGSDDGRWFIWEKQTGRLI---KM-LLGDEAVVNCVQCHPFDCVVATSGIDNTI 662 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~tg~~~---~~-l~gH~~~V~~v~fsp~~~~l~S~s~D~~i 662 (732)
+|+++++.-..+.|....+.++..+ .. +.....++.+|++.|||.+.++.+.+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 6777777777777777777644322 22 23455689999999999988888888876
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=2.7e+02 Score=33.56 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=31.0
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
....+|..+++......|++-+..|+|.+|++...+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 334479999999999999999999999999998743
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.50 E-value=2.1e+02 Score=30.60 Aligned_cols=99 Identities=13% Similarity=0.037 Sum_probs=52.0
Q ss_pred cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC
Q 004739 116 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 116 ~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
.-.|..+..++.| ..++-.|-+|.+.++=.+....-....-+. ..+..++-......+.......+..++|+|+
T Consensus 103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-----~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 103 LFEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGK-----STVNCRTTPVAERFFTSSTSLTLKQAAWHPS 176 (741)
T ss_pred eEEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCC-----ceEEEEeecccceeeccCCceeeeeccccCC
Confidence 3457778888855 566666667755444322211110000000 0001111011111111123346778899998
Q ss_pred C--CCEEEEEeCCCeEEEEECCCCCCC
Q 004739 196 R--PHLLLVGGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 196 ~--~~~l~tg~~dg~v~iwd~~~~~~~ 220 (732)
. ...|+.-++|..||+||+.....+
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCCcchh
Confidence 5 567888888999999999876544
No 463
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=63.46 E-value=1.6e+02 Score=29.06 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=110.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC-cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~-~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
+-+..+.++. ++...+..+.-++|.|+.+......+-.-.. +--.++..+ |++...+..|.-+-+.|+.+++.
T Consensus 87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs----Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS----GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec----CCEEEEeeccCcEEEEECCCCCC
Confidence 3445566664 4556666667799999987654433311122 223444433 57888888677788999987654
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
..+ ......-...-..++.+ + ++...+..|+-+.+-|+..+..+.. .
T Consensus 161 P~l-------agrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvl-----------------------i 207 (370)
T COG5276 161 PQL-------AGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVL-----------------------I 207 (370)
T ss_pred cee-------eeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeE-----------------------E
Confidence 321 22233223334566665 3 6666777889999999988764311 1
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
........+.++..+++ ..+++. .+--+.+-|....+....+. .+.+ .+.. .++ .+.-
T Consensus 208 ~~~n~g~g~~sv~vsdn-r~y~vv--y~egvlivd~s~~ssp~~~g----------syet-----~~p~--~~s--~v~V 265 (370)
T COG5276 208 GSYNTGPGTYSVSVSDN-RAYLVV--YDEGVLIVDVSGPSSPTVFG----------SYET-----SNPV--SIS--TVPV 265 (370)
T ss_pred EEEecCCceEEEEecCC-eeEEEE--cccceEEEecCCCCCceEee----------cccc-----CCcc--ccc--ceec
Confidence 11111125677777765 333333 33446677776654222211 1100 0000 133 2333
Q ss_pred CCCEEEEEecCCeEEEEECCCCC
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+++.+.+-.+.-+-+-|+.++.
T Consensus 266 s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 266 SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred ccceeeeeccccCceeEeccCCC
Confidence 46677777777777788887754
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=62.20 E-value=15 Score=40.73 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=29.6
Q ss_pred CceeEEEEcC----CCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 004739 20 GCVNAISWNS----KGSLLISGSDDTHINVWSYSSRKLLHSI 57 (732)
Q Consensus 20 ~~V~~l~~s~----dg~~lasg~~dg~i~vWd~~~~~~~~~~ 57 (732)
..+..+++++ +..+|++-+.|+++|+||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4556666666 6789999999999999999999998776
No 465
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=61.66 E-value=2.3e+02 Score=30.28 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=82.5
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC------CCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 29 SKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET------SDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 29 ~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~------~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
.|..+|. .|+....++--|++.|+.+... .-|... -+.|.|.. ..+.|+ |-.+..|.--|.+....+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW-~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi- 551 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEW-DLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI- 551 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEe-ecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCce-
Confidence 3555554 4555567777789999999888 455544 56677752 012344 4445556555666432110
Q ss_pred CCCCCCCceeecc--ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 102 DDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 102 ~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. +...+. ......+..-. ...++|.++..|-|++||--.... ...
T Consensus 552 -----~-v~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rA-------------------------Kta 598 (776)
T COG5167 552 -----K-VVESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRA-------------------------KTA 598 (776)
T ss_pred -----e-eeeehhccccccccccccc--cCceEEEecCCCceeeehhhcchh-------------------------hhc
Confidence 0 111110 11122222222 336899999999999999533221 112
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.++-...|..+....+ |.++++.+ ...+-+-|++-
T Consensus 599 lP~lG~aIk~idvta~-Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 599 LPGLGDAIKHIDVTAN-GKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred CcccccceeeeEeecC-CcEEEEee-cceEEEEeccc
Confidence 2334447788888888 55555544 45788888753
No 466
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=61.22 E-value=1.7e+02 Score=28.60 Aligned_cols=171 Identities=12% Similarity=0.044 Sum_probs=87.7
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 129 (732)
+.+.++.+....-...+.|..+ |.++-+.+.-| .|+.+|+.+++... ...+.. ..---.++.. ++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~--g~LyESTG~yG~S~l~~~d~~tg~~~~--------~~~l~~-~~FgEGit~~--~d 100 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDD--GTLYESTGLYGQSSLRKVDLETGKVLQ--------SVPLPP-RYFGEGITIL--GD 100 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEET--TEEEEEECSTTEEEEEEEETTTSSEEE--------EEE-TT-T--EEEEEEE--TT
T ss_pred EEEEECCCCCcccCccEEecCC--CEEEEeCCCCCcEEEEEEECCCCcEEE--------EEECCc-cccceeEEEE--CC
Confidence 4555553233344577888666 47778877766 68889998743211 111111 1112233443 33
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004739 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 209 (732)
Q Consensus 130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v 209 (732)
+++.-.=.++...+||..+.+.. - .+. .+ ..=..++. + +..|+.......|
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~--------------~--------~~~-y~---~EGWGLt~--d-g~~Li~SDGS~~L 151 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKI--------------G--------TFP-YP---GEGWGLTS--D-GKRLIMSDGSSRL 151 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEE--------------E--------EEE--S---SS--EEEE--C-SSCEEEE-SSSEE
T ss_pred EEEEEEecCCeEEEEccccceEE--------------E--------EEe-cC---CcceEEEc--C-CCEEEEECCccce
Confidence 45545556788999998876521 0 000 01 13345553 3 4456665556789
Q ss_pred EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
+++|..+.+....+.... .+..-..++-+.|- +|...+=.-....|...|..++.
T Consensus 152 ~~~dP~~f~~~~~i~V~~----------------~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQVTD----------------NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp EEE-TTT-SEEEEEE-EE----------------TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred EEECCcccceEEEEEEEE----------------CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 999998876554432110 11212236677776 56544444556778888888865
No 467
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.98 E-value=2e+02 Score=30.14 Aligned_cols=99 Identities=6% Similarity=0.022 Sum_probs=60.7
Q ss_pred CCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC
Q 004739 40 DTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR 117 (732)
Q Consensus 40 dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 117 (732)
.|.+.=|-+.. ....-.+....+++|.++.|++|. +.|+.--.+.+|.+++....+.+. ...+..+..+.
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn--kilAVQR~~~~v~f~nf~~d~~~l------~~~~~ck~k~~ 113 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN--KILAVQRTSKTVDFCNFIPDNSQL------EYTQECKTKNA 113 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc--ceEEEEecCceEEEEecCCCchhh------HHHHHhccCcc
Confidence 35566676542 233333434567899999999994 888888889999999884211111 11233333455
Q ss_pred ceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 118 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 118 ~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
.|....|+. + .-+|-....| +-+|-....
T Consensus 114 ~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 114 NILGFCWTS-S-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred eeEEEEEec-C-eeEEEEecCC-eEEEEEchh
Confidence 688889986 3 4555555444 666655443
No 468
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.97 E-value=24 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=22.0
Q ss_pred EEEecCCCcEEEEEcCcccEEEEEec
Q 004739 611 IASGSDDGRWFIWEKQTGRLIKMLLG 636 (732)
Q Consensus 611 lasgs~Dg~i~iWd~~tg~~~~~l~g 636 (732)
+..++.||.|.-.|.+||+.+-.++-
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45559999999999999999887764
No 469
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=60.87 E-value=1.8e+02 Score=28.76 Aligned_cols=208 Identities=17% Similarity=0.091 Sum_probs=110.8
Q ss_pred eeeccC-CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 14 ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 14 ~l~~h~-~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~---~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.+.||- +.|..+....+..++..|-.=-..-+|+.... ..+..+ .-.+-+..+.++. ++...+..+.-++
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i--~~~~l~~Dv~vse----~yvyvad~ssGL~ 109 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI--NARDLFADVRVSE----EYVYVADWSSGLR 109 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEE--ehhhhhheeEecc----cEEEEEcCCCceE
Confidence 344555 55555555544333333321112334443311 122222 3445567788875 4677777788899
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
|.|+.++..... +..+.- .+--.++.. ++++...+..|.-+.+.|+.+++.+..... +.+
T Consensus 110 IvDIS~P~sP~~-------~~~lnt-~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~lagr---------ya~ 169 (370)
T COG5276 110 IVDISTPDSPTL-------IGFLNT-DGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQLAGR---------YAL 169 (370)
T ss_pred EEeccCCCCcce-------eccccC-CceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCceeeee---------ecc
Confidence 999998654321 222221 133344554 347777777566677999988774411100 000
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
....-..++.+ |++-..+..|+-+.|-|+.+...- ..+. .-..+.
T Consensus 170 -------------~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sP----------vli~---------~~n~g~ 214 (370)
T COG5276 170 -------------PGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSP----------VLIG---------SYNTGP 214 (370)
T ss_pred -------------CCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCC----------eEEE---------EEecCC
Confidence 01112445555 667888889999999999764210 0000 001111
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
.+.++..+++.-+++.. +--+.+-|..+++.+.
T Consensus 215 g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~ 247 (370)
T COG5276 215 GTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPT 247 (370)
T ss_pred ceEEEEecCCeeEEEEc--ccceEEEecCCCCCce
Confidence 37777777776555443 4457777877755433
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=59.43 E-value=18 Score=35.79 Aligned_cols=57 Identities=5% Similarity=-0.018 Sum_probs=44.5
Q ss_pred CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEec------CCCcEEEEcCCCCCC
Q 004739 616 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSG------IDNTIKIWTPSASVP 672 (732)
Q Consensus 616 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s------~D~~i~vW~~~~~~~ 672 (732)
....||+||..+.+-..--.+=++.|+++.|..+.+++|.|. ....+..||..+..-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 455799999888876666666678999999997777777775 456789999887753
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=57.60 E-value=3.1e+02 Score=30.79 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCC----CCEEEEEEC-C---CcE
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETS----DELVVSGAG-D---AEV 88 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~----g~~l~s~~~-d---g~i 88 (732)
.+.|-.+.|.++++.+++...+|.|.+||...+ +.+..+...+...|.--.|.++.. ..++++-+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 678889999999999999999999999999332 222123223443332224443321 245544443 3 236
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeec---cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS 150 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~ 150 (732)
+++.+.... ..+..+. -+........|+-..|.+.-- .++.|.+|++...+
T Consensus 209 kL~~l~~~~---------~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~ 262 (670)
T PF10395_consen 209 KLISLSNES---------SSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQ 262 (670)
T ss_pred EEEEeccCC---------cceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCce
Confidence 677772111 1122221 122222333343333333322 56788899887654
No 472
>PLN02153 epithiospecifier protein
Probab=55.47 E-value=2.5e+02 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=15.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeE
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRKLL 54 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~~~ 54 (732)
++++++.|+.+ ..+.++|+.+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 45566667643 35778888876543
No 473
>PLN02193 nitrile-specifier protein
Probab=54.84 E-value=3.1e+02 Score=29.72 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=15.4
Q ss_pred CCEEEEEeCC----CeEEEEECCCCC
Q 004739 197 PHLLLVGGSD----AFARLYDRRMLP 218 (732)
Q Consensus 197 ~~~l~tg~~d----g~v~iwd~~~~~ 218 (732)
+++++.++.+ ..+.+||+.+.+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCE
Confidence 5677777755 458899987653
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=53.69 E-value=3.1e+02 Score=29.40 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=40.0
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEc---c-CCCcCeEEEEEecC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE---T-GHSANVFCTKFVPE 73 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~---~-~h~~~V~~~~~s~~ 73 (732)
+...-..-..|+|.|||++|++--..|.|++++..++.. +..+. . .-.+....|+|+|+
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 333445677899999998888765469999998665432 22111 1 13567899999987
No 475
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=53.27 E-value=4.8e+02 Score=31.40 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCC--EEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNGE--EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g~--~l~~~~~dg~v~iwd~~~ 279 (732)
.+.++.|--+|. .++++..++.|++|-...
T Consensus 1183 ~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1183 NVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred hceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 478888888876 456667789988886554
No 476
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=53.12 E-value=2.5e+02 Score=28.18 Aligned_cols=160 Identities=9% Similarity=0.065 Sum_probs=74.2
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
..-.+.+..+.-+++ |.+++.+..-..+.-||.-...- ....+.-...|..|.|.|++ .+.+ ....
T Consensus 141 ~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G~~~w----------~~~~r~~~~riq~~gf~~~~-~lw~-~~~G 206 (302)
T PF14870_consen 141 SETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPGQTTW----------QPHNRNSSRRIQSMGFSPDG-NLWM-LARG 206 (302)
T ss_dssp -S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT-SS-----------EEEE--SSS-EEEEEE-TTS--EEE-EETT
T ss_pred cCCcceeEeEEECCC--CcEEEEECcccEEEEecCCCccc----------eEEccCccceehhceecCCC-CEEE-EeCC
Confidence 455677888888888 57777765544556777652110 12222345789999999964 5544 4478
Q ss_pred CcEEEEEC-CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 139 GTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 139 g~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
|.|+.=+. ...+ -|. ..+.........+..++|.++ ....++|+. |++ +...+.+
T Consensus 207 g~~~~s~~~~~~~---------------~w~------~~~~~~~~~~~~~ld~a~~~~-~~~wa~gg~-G~l-~~S~DgG 262 (302)
T PF14870_consen 207 GQIQFSDDPDDGE---------------TWS------EPIIPIKTNGYGILDLAYRPP-NEIWAVGGS-GTL-LVSTDGG 262 (302)
T ss_dssp TEEEEEE-TTEEE---------------EE---------B-TTSS--S-EEEEEESSS-S-EEEEEST-T-E-EEESSTT
T ss_pred cEEEEccCCCCcc---------------ccc------cccCCcccCceeeEEEEecCC-CCEEEEeCC-ccE-EEeCCCC
Confidence 88888772 1111 000 011111123345889999987 556666554 444 4444555
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 275 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw 275 (732)
+.-.+.... . .....++.+.|.+.. .-++-+.+|.|.-|
T Consensus 263 ktW~~~~~~-----------------~-~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 263 KTWQKDRVG-----------------E-NVPSNLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp SS-EE-GGG-----------------T-TSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred ccceECccc-----------------c-CCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 422211100 0 111137888887654 45666678877655
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=53.02 E-value=4.3e+02 Score=30.82 Aligned_cols=188 Identities=13% Similarity=0.053 Sum_probs=98.5
Q ss_pred CCCcCeEEEEEe---cCCC-CCEEEEEECCCcEEEEEcCCCCC-----CCCCCCCCCCceeeccc---cCceeEEEEecC
Q 004739 60 GHSANVFCTKFV---PETS-DELVVSGAGDAEVRLFNLSRFSG-----RGLDDNAITPSALYQCH---TRRVKKLAVEVG 127 (732)
Q Consensus 60 ~h~~~V~~~~~s---~~~~-g~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~h---~~~v~~l~~~p~ 127 (732)
.-..+|..|+|. ...+ ...++..-....+.|+....... .........++..+..+ ..+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456789999998 3210 11244444566677777332111 00001112334444321 246778999998
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004739 128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 207 (732)
Q Consensus 128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg 207 (732)
+...||.....|.-.||++........ ....+.....|.. +... ........+.|.++ .+.|++++. .
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~-------~~~~~~~~~~gsi--~~d~-~e~s~w~rI~W~~~-~~~lLv~~r-~ 224 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKS-------SNLRLSRNISGSI--IFDP-EELSNWKRILWVSD-SNRLLVCNR-S 224 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCC-------cceeeccCCCccc--cCCC-cccCcceeeEecCC-CCEEEEEcC-C
Confidence 888999999999999999932221100 0000000111111 0111 11245678889887 556666654 5
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC-CEEEEEecCCeEEEEECCC
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~~~~~dg~v~iwd~~~ 279 (732)
.+.++|+.+......+. .......|..+.-+|.. .+++.-+ ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~-------------------~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLV-------------------TAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhc-------------------cCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 68899998765422110 11112257777777762 2333332 24666667666
No 478
>PRK10115 protease 2; Provisional
Probab=51.71 E-value=3.7e+02 Score=30.83 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=21.0
Q ss_pred CceeEEEEecCCCcEEEEE-eCCC----cEEEEECCCCC
Q 004739 117 RRVKKLAVEVGNPHVVWSA-SEDG----TLRQHDFRQGS 150 (732)
Q Consensus 117 ~~v~~l~~~p~~~~~l~s~-s~dg----~i~vwd~~~~~ 150 (732)
-.+..+.++|++ ++|+-+ ..+| .|++-|+.++.
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~ 164 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGN 164 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCC
Confidence 456778899966 555443 3333 57788887665
No 479
>PLN02193 nitrile-specifier protein
Probab=51.23 E-value=3.5e+02 Score=29.29 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEcc---CCCcCeEEEEEecCCCCCEEEEEECCC-----cEEEEEcCCC
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRKLLHSIET---GHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~---~h~~~V~~~~~s~~~~g~~l~s~~~dg-----~i~vwd~~~~ 96 (732)
++.+.+.|+.+ ..+.++|+.+.+....-.. .....-.++... + +++++.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~--~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-E--ENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-C--CEEEEECCCCCCCCcceEEEEECCCC
Confidence 45566666654 3578888887654432100 011111222222 2 36677776543 3667777653
No 480
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=49.88 E-value=1.4e+02 Score=33.89 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=86.4
Q ss_pred EEEEEeCCCcEEEEeCCCC---eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 33 LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~~~---~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
.+..|+.++.|.|+.-..+ ++...+...-...+.++.+++. -+..|.-||++-.+--.- .+. . ..++-
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~----Slgagl~dgt~a~y~rap-~gS-w---d~ep~ 619 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG----SLGAGLIDGTLAVYGRAP-SGS-W---DGEPN 619 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc----ccccCccCCccccccCCC-CCC-C---CCCCc
Confidence 4667888888998875522 2333333345567888888875 366666777766552211 110 0 01122
Q ss_pred eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 110 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 110 ~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
..+.....+|.+.++.. + ++.++.+|.|.++...+.... .....+..+...|++
T Consensus 620 ~~~~~g~lPvrsla~~e-d---~~was~gG~V~vi~~tt~~~~----------------------~~leahqee~~~Vth 673 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQE-D---FVWASEGGCVHVIPSTTFIRS----------------------WDLEAHQEEAHSVTH 673 (925)
T ss_pred cccccCCccccchhhhh-c---eeeeecCCceEEEechhcccc----------------------chhHHHHhhcceEEE
Confidence 33333456788888864 2 456778899999998775421 112222345558888
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 190 CDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 190 i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
+..... +-+++- .....++.++..+...
T Consensus 674 m~~~~~-gVwvaf-asG~~~rlfhtetl~h 701 (925)
T KOG3522|consen 674 MLYLDN-GVWVAF-ASGDEERLFHTETLWH 701 (925)
T ss_pred EEeeCC-ceEEEE-cCCCEEEEecccccCC
Confidence 888865 434433 3444677776665543
No 481
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=49.54 E-value=3.3e+02 Score=28.97 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 399999999999999999999999999986
No 482
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=48.88 E-value=50 Score=19.31 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=20.1
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYD 213 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd 213 (732)
.|.+++..+ .+++++.+.+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 567777774 4899999999999983
No 483
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=47.78 E-value=54 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEE
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLM 275 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iw 275 (732)
...++++++|+++++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5678888888877776667777664
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=47.11 E-value=3.7e+02 Score=28.33 Aligned_cols=154 Identities=10% Similarity=0.063 Sum_probs=77.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
...+..++||.+++.|..-..++-||-...... .+...-...++.+.|.++ +..++. +..|.+.. ....+....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~-~~~~~~~~~l~~v~~~~d--g~l~l~-g~~G~l~~-S~d~G~~~~- 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQ-PHNRASARRIQNMGWRAD--GGLWLL-TRGGGLYV-SKGTGLTEE- 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceE-EecCCCccceeeeeEcCC--CCEEEE-eCCceEEE-ecCCCCccc-
Confidence 445667788888887754333344553221111 121345567899999988 455554 46676543 222211000
Q ss_pred CCCCCCCceeecc--ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 102 DDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 102 ~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. ........ -...+.++.|.+++ ..+ .++..|.+.... ..++.- . ....
T Consensus 315 -~---~~f~~~~~~~~~~~l~~v~~~~d~-~~~-a~G~~G~v~~s~-D~G~tW---------------~-------~~~~ 365 (398)
T PLN00033 315 -D---FDFEEADIKSRGFGILDVGYRSKK-EAW-AAGGSGILLRST-DGGKSW---------------K-------RDKG 365 (398)
T ss_pred -c---cceeecccCCCCcceEEEEEcCCC-cEE-EEECCCcEEEeC-CCCcce---------------e-------Eccc
Confidence 0 00111111 12358889888743 444 556677665553 333311 0 0000
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
...-...++.+.|.++ ++.++ .+.+|.|.-|
T Consensus 366 ~~~~~~~ly~v~f~~~-~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 366 ADNIAANLYSVKFFDD-KKGFV-LGNDGVLLRY 396 (398)
T ss_pred cCCCCcceeEEEEcCC-CceEE-EeCCcEEEEe
Confidence 1112236778888775 44444 4567776544
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=45.59 E-value=69 Score=25.24 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=31.5
Q ss_pred ecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCe-EEEec-CCCcEEEE
Q 004739 614 GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCV-VATSG-IDNTIKIW 665 (732)
Q Consensus 614 gs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~-l~S~s-~D~~i~vW 665 (732)
+..+|.+.-||..|++..--+.+ -.--++|+.+||+.. |++=. .-...|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 45578899999998886444444 446789999999994 44333 23334555
No 486
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=45.45 E-value=3.4e+02 Score=27.48 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCee---EEEEcc-CCCcCeEEEEEecCCCCCEEEEEEC-----CCcEEEEEcCC
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRKL---LHSIET-GHSANVFCTKFVPETSDELVVSGAG-----DAEVRLFNLSR 95 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~~---~~~~~~-~h~~~V~~~~~s~~~~g~~l~s~~~-----dg~i~vwd~~~ 95 (732)
++.+++.|+.+ ..+..+|+.+.+. ...+.. .....-.+++... +.+.+.|+. ...+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~---~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD---GTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC---CEEEEEeCcCCCccCceEEEEcCCC
Confidence 45666777654 3466677766553 122210 1111112222322 366666664 23577888875
Q ss_pred CC
Q 004739 96 FS 97 (732)
Q Consensus 96 ~~ 97 (732)
..
T Consensus 149 ~~ 150 (323)
T TIGR03548 149 QE 150 (323)
T ss_pred CC
Confidence 43
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=44.65 E-value=3.9e+02 Score=27.86 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=105.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEe----cCCCCCE--EEEEE-CC---CcEEEEEcCCCCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV----PETSDEL--VVSGA-GD---AEVRLFNLSRFSGR 99 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s----~~~~g~~--l~s~~-~d---g~i~vwd~~~~~~~ 99 (732)
...+++....++-+.+||+. |+.+..+..+ .++.+..- -. |+. |+.++ .+ .+|++|.+....+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G---r~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVG---RPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS----EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCC---CcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 44688888889999999976 5566666333 33333321 12 222 33333 32 46999988632221
Q ss_pred CCCCCCCCCceeeccccCceeEEEEe--cC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVE--VG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~--p~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
...... .-..+..-...+..+++- |. +.-+++...++|.+..|.+.....- .. ....+..+.
T Consensus 141 L~~v~~--~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g------~v-~~~lVR~f~------ 205 (381)
T PF02333_consen 141 LTDVTD--PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG------KV-SATLVREFK------ 205 (381)
T ss_dssp EEE-CB--TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS------SE-EEEEEEEEE------
T ss_pred ceEcCC--CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC------cE-eeEEEEEec------
Confidence 100000 000111112346667663 33 3346667788999999988643210 00 001111111
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
-...+..|..... ...|..+-.+.-|.-|+.+....... ..+...... +-...|-.|++
T Consensus 206 ------~~sQ~EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~--------~~v~~~~g~------~l~aDvEGlal 264 (381)
T PF02333_consen 206 ------VGSQPEGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDR--------TLVASADGD------GLVADVEGLAL 264 (381)
T ss_dssp -------SS-EEEEEEETT-TTEEEEEETTTEEEEEESSCCC-S----------EEEEEBSSS------SB-S-EEEEEE
T ss_pred ------CCCcceEEEEecc-cCCEEEecCccEEEEEecCCCCCCcc--------eeeeccccc------ccccCccceEE
Confidence 1126788888887 55888898888888888764321110 111111111 11113666666
Q ss_pred c--CCC-CEEEEEec-CCeEEEEECCCC
Q 004739 257 S--PNG-EEVLLSYS-GEHVYLMDVNHA 280 (732)
Q Consensus 257 s--p~g-~~l~~~~~-dg~v~iwd~~~~ 280 (732)
- +++ .||+++++ +++..||+....
T Consensus 265 y~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 265 YYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 4 344 37777777 789999998864
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=43.23 E-value=47 Score=25.98 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 251 LTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
.+.+.++|++++|++++. .+.|++|+.+.
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 577999999999988876 78999998764
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=43.17 E-value=2.2e+02 Score=24.52 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=49.3
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec----CCCcEEEEEeCCCcE
Q 004739 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV----GNPHVVWSASEDGTL 141 (732)
Q Consensus 66 ~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p----~~~~~l~s~s~dg~i 141 (732)
..-+|.... ..|+.++.-|+|.|++.......... ....+..+. -...|++|+--+ ++...|+.|+. ..|
T Consensus 2 aiGkfDG~~--pcL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~l 75 (136)
T PF14781_consen 2 AIGKFDGVH--PCLACATTGGKVFIHNPHERGQRTGR--QDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSL 75 (136)
T ss_pred eEEEeCCCc--eeEEEEecCCEEEEECCCcccccccc--ccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceE
Confidence 344566663 67888888999999998754322110 112234443 356777776544 23456766665 579
Q ss_pred EEEECCCCC
Q 004739 142 RQHDFRQGS 150 (732)
Q Consensus 142 ~vwd~~~~~ 150 (732)
..||+....
T Consensus 76 laYDV~~N~ 84 (136)
T PF14781_consen 76 LAYDVENNS 84 (136)
T ss_pred EEEEcccCc
Confidence 999998876
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=41.61 E-value=1.7e+02 Score=23.02 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
+|.+.-||+.+++....+ .+ -.--+.+++++++ ..++.+
T Consensus 36 ~GRll~ydp~t~~~~vl~-~~-L~fpNGVals~d~--~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL-DG-LYFPNGVALSPDE--SFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEE-EE-ESSEEEEEE-TTS--SEEEEE
T ss_pred CcCEEEEECCCCeEEEeh-hC-CCccCeEEEcCCC--CEEEEE
Confidence 577888999988754433 22 2346899999995 655544
No 491
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=40.38 E-value=4e+02 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=40.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEE-EECCCcEEEEEcCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVS-GAGDAEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s-~~~dg~i~vwd~~~~ 96 (732)
++++|+.|..+| +.+-++... .....+ .+...|+++...+.. +.|++ ++....++++++...
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~~~--~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLEEN--NVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEhhh--CEEEEEeCCcceEEEEEHHHh
Confidence 346899999888 555555542 223333 356789999999885 44444 444455999999643
No 492
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=38.99 E-value=23 Score=38.49 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=48.6
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeeEEEEc------cCC-----CcCeEEEEEecCCC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIE------TGH-----SANVFCTKFVPETS 75 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg-~i~vWd~~~~~~~~~~~------~~h-----~~~V~~~~~s~~~~ 75 (732)
.+..++.|+.|+.+|..++|.+.+.+|++++-.| .|.++.+. ..+.+.. ..| ...|..++|+...
T Consensus 304 S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim--et~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s- 380 (788)
T KOG2109|consen 304 SFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM--ETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVS- 380 (788)
T ss_pred chhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec--cccccccccccccccchhcchHHHHHHHhhhhhc-
Confidence 4556778999999999999999999999988654 34444432 2222111 111 1234457777774
Q ss_pred CCEEEEEECCCc
Q 004739 76 DELVVSGAGDAE 87 (732)
Q Consensus 76 g~~l~s~~~dg~ 87 (732)
+++..++.+|.
T Consensus 381 -~~r~~gsc~Ge 391 (788)
T KOG2109|consen 381 -TIRTAGSCEGE 391 (788)
T ss_pred -ceEeecccCCC
Confidence 66666666654
No 493
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.08 E-value=3.8e+02 Score=26.65 Aligned_cols=102 Identities=25% Similarity=0.264 Sum_probs=71.4
Q ss_pred hHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchh
Q 004739 333 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA 412 (732)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 412 (732)
..|...+....+.+. |..++..+...+.-.+.. +.+++..+.....- +....++.+|..++.+|+.+.++
T Consensus 82 E~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~L---g~~~~AVkDce~Al~iDp~yska 151 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKL---GEYEDAVKDCESALSIDPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHh---cchHHHHHHHHHHHhcChHHHHH
Confidence 444445555555555 666777777766544221 22455555443321 11346799999999999999999
Q ss_pred hHHHHHHHHHhCChHHHHHHHHHHhccCCCCh
Q 004739 413 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 444 (732)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 444 (732)
+.++...++.++.+..+...-...+-+.|+..
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 99999999999999999888777788899764
No 494
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=36.31 E-value=5.4e+02 Score=27.13 Aligned_cols=111 Identities=8% Similarity=0.077 Sum_probs=62.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----eEEEEccC-CCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLHSIETG-HSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~-h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
...++.+.|.+++.+++++ .+|.+. |....++ ........ -...++++.|.++ ..++.++..|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d---~~~~a~G~~G~v~~s~ 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSK---KEAWAAGGSGILLRST 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCC---CcEEEEECCCcEEEeC
Confidence 3567889999999877766 456543 4444443 22222111 2235889999987 3456666788776654
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 144 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 144 (732)
-. ++.. .....-..-....+.+.|.+++ +.+ ..+.+|.|.-|
T Consensus 355 D~---G~tW-----~~~~~~~~~~~~ly~v~f~~~~-~g~-~~G~~G~il~~ 396 (398)
T PLN00033 355 DG---GKSW-----KRDKGADNIAANLYSVKFFDDK-KGF-VLGNDGVLLRY 396 (398)
T ss_pred CC---Ccce-----eEccccCCCCcceeEEEEcCCC-ceE-EEeCCcEEEEe
Confidence 32 1110 1111112234567889887633 455 45567877655
No 495
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.73 E-value=1.3e+02 Score=30.23 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=48.8
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCccc---EEEEeec--CCCCeEEEecCCCcEEEEcCC
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV---VNCVQCH--PFDCVVATSGIDNTIKIWTPS 668 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~---V~~v~fs--p~~~~l~S~s~D~~i~vW~~~ 668 (732)
..++|.||+|.-.-.+|.+-|.++|+.+..|.|-... +....|+ .+-+++-....+++|.|+|-.
T Consensus 151 ~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 151 KDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred ecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3678999999999999999999999999999886221 1122233 344456566788999999984
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=35.43 E-value=59 Score=20.72 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCCEEEEecCCCcEEEEEcCc
Q 004739 607 RGDYIASGSDDGRWFIWEKQT 627 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~t 627 (732)
++..|..++.||++...|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 567888899999999999764
No 497
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.00 E-value=1.4e+02 Score=29.99 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=50.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC---eEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN---VFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~---V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
-|+++...++|.+|+|.-.-.+|.+.|..+|+.+..+ .+.... .....|+-..+-+.+-.+..+++|.++|=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l-gG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL-GGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe-CCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 4778888889999999988889999999999999988 444221 112223333212344445668888888753
No 498
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=34.55 E-value=1.4e+02 Score=23.32 Aligned_cols=32 Identities=6% Similarity=0.000 Sum_probs=24.4
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 117 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 117 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
...+.|.++|++..++++....+.|++|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45678999997756666677788999998653
No 499
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=34.48 E-value=1.1e+02 Score=31.29 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=31.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee---EEEE---ccCCCcCeEEEEEecC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSI---ETGHSANVFCTKFVPE 73 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~---~~~~---~~~h~~~V~~~~~s~~ 73 (732)
-+.|+|.|||++|++ ...|.|++++ .++.. +..+ ..........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 467889999877665 4588888888 44433 2222 1234456788888884
No 500
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=33.88 E-value=6.6e+02 Score=27.45 Aligned_cols=106 Identities=10% Similarity=0.180 Sum_probs=55.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEccCC-CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004739 28 NSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 28 s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
..++..++-+..+|.+..-.+.... .+..+ +. .....++.+..++ +.+|+.|+.-|.=.++.+....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~--g~~~~~~s~l~~l~~g-~d~lf~gs~~gds~l~~~~~~~------ 289 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL--GTLCSIASSLTYLKNG-GDYLFVGSEFGDSQLLQISLSN------ 289 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE--EE--S-ESEEEEESTT---EEEEEESSS-EEEEEEESES------
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc--CCcCChhheEEEEcCC-CEEEEEEEecCCcEEEEEeCCC------
Confidence 3466788888999999888776543 22222 22 4456777777763 3488888875554444433211
Q ss_pred CCCCCceeeccccCceeEEEEecC---CCc------EEEEEe---CCCcEEEEE
Q 004739 104 NAITPSALYQCHTRRVKKLAVEVG---NPH------VVWSAS---EDGTLRQHD 145 (732)
Q Consensus 104 ~~~~~~~~~~~h~~~v~~l~~~p~---~~~------~l~s~s---~dg~i~vwd 145 (732)
...+..+. .-++|.++.+.+. +.. .|++++ .+|.+++..
T Consensus 290 --l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr 340 (504)
T PF10433_consen 290 --LEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR 340 (504)
T ss_dssp --EEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred --cEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence 12233333 2467888877531 111 444543 456777663
Done!