Query 004739
Match_columns 732
No_of_seqs 434 out of 3316
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 04:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.7E-62 6E-67 549.3 11.1 542 9-703 6-577 (577)
2 1nr0_A Actin interacting prote 100.0 2.7E-57 9.4E-62 508.5 24.2 509 8-668 48-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 1.2E-57 4E-62 510.1 16.8 496 7-666 45-577 (577)
4 1nr0_A Actin interacting prote 100.0 7.4E-57 2.5E-61 505.0 13.7 532 17-704 16-609 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-50 8.1E-55 491.5 26.3 531 12-684 608-1222(1249)
6 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-49 8.7E-54 459.5 27.1 533 15-680 13-675 (902)
7 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-48 6.4E-53 474.8 24.7 539 7-668 645-1248(1249)
8 1pgu_A Actin interacting prote 100.0 6.8E-49 2.3E-53 442.6 18.2 521 10-705 54-613 (615)
9 1vyh_C Platelet-activating fac 100.0 1.7E-44 5.9E-49 384.0 36.3 190 10-260 99-288 (410)
10 1got_B GT-beta; complex (GTP-b 100.0 3.2E-43 1.1E-47 364.6 40.5 213 9-279 45-257 (340)
11 1pgu_A Actin interacting prote 100.0 2.1E-45 7.3E-50 414.1 25.3 481 9-669 106-614 (615)
12 2ynn_A Coatomer subunit beta'; 100.0 7.2E-43 2.5E-47 355.8 38.9 214 8-279 2-217 (304)
13 3ow8_A WD repeat-containing pr 100.0 2.9E-43 1E-47 361.1 35.7 209 10-279 23-237 (321)
14 3iz6_a 40S ribosomal protein R 100.0 2.2E-43 7.5E-48 371.8 34.2 226 8-280 55-281 (380)
15 2pbi_B Guanine nucleotide-bind 100.0 4.1E-42 1.4E-46 358.0 39.9 217 9-279 54-271 (354)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-42 7.2E-47 359.1 35.0 220 7-279 3-225 (345)
17 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-43 4.6E-48 411.5 27.9 551 17-708 56-785 (902)
18 4g56_B MGC81050 protein; prote 100.0 2.5E-42 8.6E-47 359.9 34.4 213 13-279 36-258 (357)
19 4ery_A WD repeat-containing pr 100.0 2.8E-41 9.7E-46 345.9 41.1 212 8-279 12-223 (312)
20 4gqb_B Methylosome protein 50; 100.0 3.2E-42 1.1E-46 356.0 34.1 208 15-279 26-246 (344)
21 3mkq_A Coatomer beta'-subunit; 100.0 2.5E-43 8.4E-48 410.9 18.7 478 8-666 2-502 (814)
22 1erj_A Transcriptional repress 100.0 3.7E-40 1.3E-44 348.8 35.7 208 17-279 62-287 (393)
23 3frx_A Guanine nucleotide-bind 100.0 5.4E-40 1.9E-44 336.9 35.7 212 7-279 5-227 (319)
24 2hes_X YDR267CP; beta-propelle 100.0 7.4E-40 2.5E-44 337.7 35.7 224 7-279 2-230 (330)
25 2xzm_R RACK1; ribosome, transl 100.0 1.1E-39 3.8E-44 338.6 36.0 214 7-279 9-244 (343)
26 1r5m_A SIR4-interacting protei 100.0 1.2E-39 4.3E-44 348.9 32.1 339 17-669 43-425 (425)
27 2pm9_A Protein WEB1, protein t 100.0 7.3E-41 2.5E-45 357.8 21.3 349 18-670 11-415 (416)
28 4aow_A Guanine nucleotide-bind 100.0 3.9E-38 1.3E-42 326.7 37.7 216 5-279 24-246 (340)
29 3ow8_A WD repeat-containing pr 100.0 4.4E-39 1.5E-43 330.1 23.4 285 59-705 29-320 (321)
30 4e54_B DNA damage-binding prot 100.0 6.3E-38 2.2E-42 336.6 32.6 220 8-281 108-329 (435)
31 1vyh_C Platelet-activating fac 100.0 2.5E-38 8.7E-43 336.4 28.3 166 55-281 102-267 (410)
32 3gre_A Serine/threonine-protei 100.0 3.8E-38 1.3E-42 339.1 27.5 227 6-281 49-294 (437)
33 1gxr_A ESG1, transducin-like e 100.0 1E-37 3.5E-42 322.9 29.6 326 18-667 8-335 (337)
34 3ei3_B DNA damage-binding prot 100.0 5.6E-37 1.9E-41 323.8 35.2 218 7-281 61-284 (383)
35 3zwl_B Eukaryotic translation 100.0 1.5E-36 5.2E-41 318.3 37.6 221 10-279 23-249 (369)
36 2ynn_A Coatomer subunit beta'; 100.0 7.3E-37 2.5E-41 311.4 31.8 167 53-279 5-172 (304)
37 1sq9_A Antiviral protein SKI8; 100.0 9.3E-37 3.2E-41 323.8 33.3 229 10-280 7-268 (397)
38 2j04_B YDR362CP, TAU91; beta p 100.0 3.6E-38 1.2E-42 342.0 22.7 218 13-279 128-386 (524)
39 3dm0_A Maltose-binding peripla 100.0 3.7E-36 1.3E-40 342.8 38.1 215 8-279 371-592 (694)
40 3odt_A Protein DOA1; ubiquitin 100.0 4.1E-36 1.4E-40 307.4 34.4 210 6-279 5-214 (313)
41 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-36 8.7E-41 325.5 33.8 203 9-281 108-310 (445)
42 3k26_A Polycomb protein EED; W 100.0 2.6E-36 9E-41 316.2 32.1 231 14-280 13-261 (366)
43 3i2n_A WD repeat-containing pr 100.0 3.9E-36 1.3E-40 313.8 31.8 214 12-279 11-243 (357)
44 1k8k_C P40, ARP2/3 complex 41 100.0 8.7E-36 3E-40 313.2 32.7 224 14-279 3-233 (372)
45 1got_B GT-beta; complex (GTP-b 100.0 1.8E-36 6.3E-41 313.8 26.9 171 51-279 45-215 (340)
46 3iz6_a 40S ribosomal protein R 100.0 5.7E-37 1.9E-41 322.8 22.0 313 41-706 46-375 (380)
47 3vl1_A 26S proteasome regulato 100.0 2.7E-36 9.1E-41 322.9 25.7 346 20-669 57-419 (420)
48 4h5i_A Guanine nucleotide-exch 100.0 1.8E-35 6.3E-40 308.8 30.0 217 9-279 4-254 (365)
49 4a11_B DNA excision repair pro 100.0 2.3E-34 7.8E-39 306.3 38.5 230 8-280 32-277 (408)
50 3v7d_B Cell division control p 100.0 7.2E-35 2.5E-39 316.1 35.0 229 11-281 113-343 (464)
51 4gqb_B Methylosome protein 50; 100.0 7E-35 2.4E-39 301.0 32.3 207 16-279 79-289 (344)
52 3mkq_A Coatomer beta'-subunit; 100.0 3.8E-35 1.3E-39 341.8 32.9 470 7-669 43-601 (814)
53 4g56_B MGC81050 protein; prote 100.0 4E-36 1.4E-40 313.0 21.2 198 24-280 10-214 (357)
54 4gga_A P55CDC, cell division c 100.0 3.3E-34 1.1E-38 306.2 36.6 200 21-279 107-310 (420)
55 2pbi_B Guanine nucleotide-bind 100.0 3.3E-35 1.1E-39 305.8 27.8 173 52-279 55-229 (354)
56 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-35 3.5E-40 308.7 23.2 176 51-279 5-181 (345)
57 3dwl_C Actin-related protein 2 100.0 1.5E-35 5E-40 312.2 24.5 230 12-279 4-236 (377)
58 4ggc_A P55CDC, cell division c 100.0 1.1E-33 3.9E-38 290.0 36.7 211 10-279 12-230 (318)
59 4aez_A CDC20, WD repeat-contai 100.0 6.6E-34 2.3E-38 302.0 32.9 201 16-279 88-293 (401)
60 2pm9_A Protein WEB1, protein t 100.0 1.2E-35 4.2E-40 317.2 18.6 316 61-676 11-344 (416)
61 1yfq_A Cell cycle arrest prote 100.0 7.4E-34 2.5E-38 294.7 31.3 206 10-279 2-225 (342)
62 1erj_A Transcriptional repress 100.0 4.7E-35 1.6E-39 309.6 22.1 207 10-280 6-239 (393)
63 3bg1_A Protein SEC13 homolog; 100.0 1.7E-34 5.8E-39 295.6 24.4 152 13-195 7-161 (316)
64 2pm7_B Protein transport prote 100.0 2.2E-33 7.5E-38 284.6 32.1 169 59-279 6-189 (297)
65 1p22_A F-BOX/WD-repeat protein 100.0 2.1E-33 7.3E-38 301.5 33.7 197 15-279 129-325 (435)
66 2hes_X YDR267CP; beta-propelle 100.0 2.5E-34 8.5E-39 296.3 24.2 180 50-279 3-184 (330)
67 3dw8_B Serine/threonine-protei 100.0 3.8E-33 1.3E-37 301.0 33.8 233 17-279 26-315 (447)
68 3mmy_A MRNA export factor; mRN 100.0 3.5E-33 1.2E-37 292.5 31.9 210 7-279 27-247 (368)
69 3f3f_A Nucleoporin SEH1; struc 100.0 3.9E-33 1.3E-37 289.7 31.7 237 11-280 3-250 (351)
70 1r5m_A SIR4-interacting protei 100.0 6.6E-35 2.3E-39 312.2 17.9 324 41-671 25-363 (425)
71 4ery_A WD repeat-containing pr 100.0 1.7E-32 6E-37 280.5 32.1 167 52-279 14-180 (312)
72 2pm7_B Protein transport prote 100.0 3.7E-33 1.3E-37 282.9 26.2 265 12-344 2-284 (297)
73 2xzm_R RACK1; ribosome, transl 100.0 7.6E-33 2.6E-37 287.0 26.4 173 52-276 12-200 (343)
74 3vl1_A 26S proteasome regulato 100.0 3E-33 1E-37 299.1 23.2 307 63-670 57-366 (420)
75 1gxr_A ESG1, transducin-like e 100.0 2E-32 6.9E-37 283.0 28.1 205 15-279 47-255 (337)
76 2j04_B YDR362CP, TAU91; beta p 100.0 7.7E-33 2.6E-37 300.2 24.4 209 13-279 201-428 (524)
77 3frx_A Guanine nucleotide-bind 100.0 1.8E-32 6.2E-37 280.9 25.2 258 10-346 56-318 (319)
78 4aow_A Guanine nucleotide-bind 100.0 4.1E-32 1.4E-36 281.3 25.1 176 50-279 27-204 (340)
79 2j04_A TAU60, YPL007P, hypothe 100.0 8.6E-34 2.9E-38 298.5 11.8 200 17-281 13-213 (588)
80 3gre_A Serine/threonine-protei 100.0 3.1E-32 1E-36 292.9 23.3 203 26-279 34-245 (437)
81 4gga_A P55CDC, cell division c 100.0 1.3E-30 4.3E-35 278.4 34.4 214 8-279 134-353 (420)
82 3ei3_B DNA damage-binding prot 100.0 6.2E-32 2.1E-36 285.1 22.4 178 46-279 58-236 (383)
83 1k8k_C P40, ARP2/3 complex 41 100.0 9.8E-32 3.3E-36 282.2 20.9 169 59-279 5-173 (372)
84 3v7d_B Cell division control p 100.0 6.5E-31 2.2E-35 284.9 28.0 319 53-684 113-437 (464)
85 2aq5_A Coronin-1A; WD40 repeat 100.0 2.1E-31 7E-36 283.0 23.5 211 21-280 36-255 (402)
86 2xyi_A Probable histone-bindin 100.0 3.8E-30 1.3E-34 275.4 33.4 223 20-279 46-309 (430)
87 4e54_B DNA damage-binding prot 100.0 1.5E-30 5E-35 279.2 28.5 166 59-279 116-282 (435)
88 3dm0_A Maltose-binding peripla 100.0 3.1E-31 1.1E-35 302.1 24.5 173 55-279 376-550 (694)
89 4aez_A CDC20, WD repeat-contai 100.0 9.4E-30 3.2E-34 270.0 32.6 210 8-279 122-336 (401)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-30 5.8E-35 279.9 26.6 160 52-280 109-269 (445)
91 3k26_A Polycomb protein EED; W 100.0 1.3E-30 4.6E-35 272.7 24.3 174 52-279 8-192 (366)
92 1sq9_A Antiviral protein SKI8; 100.0 4.3E-31 1.5E-35 280.1 20.7 186 58-279 12-216 (397)
93 3jrp_A Fusion protein of prote 100.0 3.3E-30 1.1E-34 271.2 27.2 175 52-279 2-191 (379)
94 3zwl_B Eukaryotic translation 100.0 7.2E-30 2.5E-34 267.4 27.8 300 53-708 24-348 (369)
95 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-30 1.5E-34 262.6 24.6 167 47-276 3-171 (313)
96 3i2n_A WD repeat-containing pr 100.0 1E-30 3.5E-35 272.7 20.0 178 50-279 6-199 (357)
97 3jrp_A Fusion protein of prote 100.0 3E-30 1E-34 271.4 23.1 270 10-347 2-289 (379)
98 3vu4_A KMHSV2; beta-propeller 100.0 4E-29 1.4E-33 259.9 30.9 211 9-279 9-227 (355)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.3E-28 4.5E-33 265.3 34.0 209 19-281 4-273 (450)
100 1yfq_A Cell cycle arrest prote 100.0 3.9E-29 1.3E-33 259.1 28.0 159 59-279 8-179 (342)
101 3dwl_C Actin-related protein 2 100.0 2.2E-30 7.5E-35 272.6 18.4 168 60-279 9-177 (377)
102 4gq1_A NUP37; propeller, trans 100.0 9.7E-30 3.3E-34 268.6 21.4 185 21-217 91-287 (393)
103 2w18_A PALB2, fancn, partner a 100.0 2.3E-29 7.9E-34 248.7 21.9 98 563-667 252-355 (356)
104 4ggc_A P55CDC, cell division c 100.0 7.7E-28 2.6E-32 246.5 33.5 214 8-279 54-273 (318)
105 4a11_B DNA excision repair pro 100.0 7.4E-28 2.5E-32 255.9 34.3 225 17-279 97-323 (408)
106 2j04_A TAU60, YPL007P, hypothe 100.0 1.3E-29 4.6E-34 266.7 19.5 136 547-705 180-320 (588)
107 1p22_A F-BOX/WD-repeat protein 100.0 9.5E-29 3.2E-33 265.3 23.0 156 59-279 130-285 (435)
108 3lrv_A PRE-mRNA-splicing facto 100.0 8.2E-29 2.8E-33 256.7 21.6 197 27-280 44-245 (343)
109 3bws_A Protein LP49; two-domai 100.0 1.8E-27 6.1E-32 255.4 31.8 208 10-279 114-334 (433)
110 3jro_A Fusion protein of prote 100.0 1.2E-28 4E-33 282.4 23.5 169 59-279 6-189 (753)
111 3jro_A Fusion protein of prote 100.0 1.3E-28 4.3E-33 282.1 22.8 268 12-347 2-287 (753)
112 1l0q_A Surface layer protein; 100.0 5.5E-27 1.9E-31 247.9 30.7 184 32-279 3-189 (391)
113 3mmy_A MRNA export factor; mRN 100.0 2.4E-27 8.4E-32 248.0 26.4 173 46-279 24-199 (368)
114 3vu4_A KMHSV2; beta-propeller 100.0 4.5E-27 1.6E-31 244.4 27.2 83 585-671 188-273 (355)
115 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-27 6.7E-32 252.3 24.2 257 10-347 72-344 (402)
116 3bg1_A Protein SEC13 homolog; 100.0 1.4E-27 4.8E-32 244.1 22.2 222 11-279 49-293 (316)
117 4h5i_A Guanine nucleotide-exch 100.0 2.5E-27 8.6E-32 247.2 23.0 206 18-279 132-343 (365)
118 2xyi_A Probable histone-bindin 100.0 2.1E-27 7.3E-32 254.1 21.8 273 13-344 122-409 (430)
119 3dw8_B Serine/threonine-protei 100.0 8.7E-27 3E-31 251.1 26.4 290 10-332 72-439 (447)
120 1k32_A Tricorn protease; prote 99.9 5.1E-28 1.8E-32 287.8 13.6 469 10-671 43-639 (1045)
121 1nir_A Nitrite reductase; hemo 99.9 3.5E-26 1.2E-30 250.2 26.9 205 26-281 144-357 (543)
122 1l0q_A Surface layer protein; 99.9 6.1E-25 2.1E-29 232.2 35.2 208 7-279 20-233 (391)
123 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.5E-26 1.9E-30 244.8 25.8 174 62-279 4-229 (450)
124 1k32_A Tricorn protease; prote 99.9 2.9E-26 9.9E-31 272.7 25.1 429 18-670 13-503 (1045)
125 3lrv_A PRE-mRNA-splicing facto 99.9 3.5E-26 1.2E-30 236.9 21.1 152 76-279 48-201 (343)
126 3f3f_A Nucleoporin SEH1; struc 99.9 3.8E-25 1.3E-29 229.3 26.8 249 10-283 48-341 (351)
127 2w18_A PALB2, fancn, partner a 99.9 4.9E-25 1.7E-29 217.8 21.2 202 21-277 113-355 (356)
128 3bws_A Protein LP49; two-domai 99.9 1.1E-23 3.8E-28 225.7 30.0 204 18-279 59-292 (433)
129 4gq1_A NUP37; propeller, trans 99.9 7.3E-25 2.5E-29 231.2 19.1 238 12-279 129-389 (393)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 5E-24 1.7E-28 226.1 25.1 199 19-279 62-300 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-23 3.7E-28 242.2 29.5 219 19-281 36-323 (741)
132 1nir_A Nitrite reductase; hemo 99.9 7.8E-22 2.7E-26 215.7 31.9 215 7-279 167-402 (543)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-22 2.3E-26 209.8 27.3 203 13-279 111-344 (415)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.7E-22 6E-27 231.6 20.7 225 20-281 17-291 (723)
135 2z3z_A Dipeptidyl aminopeptida 99.9 1E-21 3.4E-26 224.5 26.0 221 5-280 13-294 (706)
136 1ri6_A Putative isomerase YBHE 99.9 1.9E-20 6.4E-25 193.6 25.5 197 33-279 7-209 (343)
137 3u4y_A Uncharacterized protein 99.9 2.6E-19 9E-24 184.1 29.2 199 25-280 3-208 (331)
138 2ojh_A Uncharacterized protein 99.9 8.5E-20 2.9E-24 184.0 24.2 179 36-279 17-204 (297)
139 3vgz_A Uncharacterized protein 99.8 7.6E-19 2.6E-23 182.3 31.1 205 18-279 39-262 (353)
140 1pby_B Quinohemoprotein amine 99.8 1.1E-19 3.8E-24 187.2 23.4 72 604-678 248-319 (337)
141 2z3z_A Dipeptidyl aminopeptida 99.8 1.1E-19 3.7E-24 207.6 23.5 201 20-278 82-341 (706)
142 3o4h_A Acylamino-acid-releasin 99.8 4.3E-19 1.5E-23 197.6 25.2 197 18-280 20-228 (582)
143 2ojh_A Uncharacterized protein 99.8 6.4E-19 2.2E-23 177.6 23.8 237 12-322 34-287 (297)
144 2ecf_A Dipeptidyl peptidase IV 99.8 3.1E-19 1.1E-23 205.1 24.3 126 548-677 285-422 (741)
145 3hfq_A Uncharacterized protein 99.8 5.6E-18 1.9E-22 175.4 30.9 197 40-279 15-218 (347)
146 1z68_A Fibroblast activation p 99.8 2.9E-19 9.9E-24 204.5 22.6 215 24-276 20-284 (719)
147 1xfd_A DIP, dipeptidyl aminope 99.8 3E-19 1E-23 204.6 17.8 167 63-279 17-204 (723)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-18 3.9E-23 185.4 17.6 219 18-280 35-279 (434)
149 1jmx_B Amine dehydrogenase; ox 99.8 7.8E-18 2.7E-22 174.3 23.0 158 24-221 4-180 (349)
150 3pe7_A Oligogalacturonate lyas 99.8 1.6E-17 5.5E-22 174.8 24.5 213 7-280 18-274 (388)
151 1ri6_A Putative isomerase YBHE 99.8 5.8E-17 2E-21 167.2 28.3 216 17-279 35-262 (343)
152 3scy_A Hypothetical bacterial 99.8 2.2E-16 7.5E-21 164.4 31.3 213 30-279 12-242 (361)
153 3u4y_A Uncharacterized protein 99.8 4.5E-17 1.6E-21 167.3 23.2 267 8-347 29-306 (331)
154 2oit_A Nucleoporin 214KDA; NH2 99.7 7.6E-17 2.6E-21 171.3 20.1 221 17-279 90-333 (434)
155 3vgz_A Uncharacterized protein 99.7 3.8E-16 1.3E-20 161.8 24.2 169 61-280 39-216 (353)
156 3scy_A Hypothetical bacterial 99.7 4.8E-15 1.6E-19 154.2 32.3 224 18-279 48-291 (361)
157 3o4h_A Acylamino-acid-releasin 99.7 6.3E-17 2.1E-21 180.1 18.4 67 604-673 202-278 (582)
158 4a5s_A Dipeptidyl peptidase 4 99.7 1E-15 3.4E-20 175.2 26.3 114 20-151 17-144 (740)
159 1pby_B Quinohemoprotein amine 99.7 5.7E-16 1.9E-20 159.3 21.5 235 8-284 20-315 (337)
160 1z68_A Fibroblast activation p 99.7 1.8E-16 6.2E-21 181.3 15.9 160 66-278 19-199 (719)
161 1jof_A Carboxy-CIS,CIS-muconat 99.7 3.4E-15 1.2E-19 155.5 23.0 196 33-279 4-224 (365)
162 3c5m_A Oligogalacturonate lyas 99.7 8.2E-16 2.8E-20 162.1 17.3 211 8-279 19-273 (396)
163 3azo_A Aminopeptidase; POP fam 99.7 3.8E-15 1.3E-19 168.6 21.8 206 13-279 17-274 (662)
164 3hfq_A Uncharacterized protein 99.7 7.8E-15 2.7E-19 151.6 22.3 225 11-278 77-316 (347)
165 2oiz_A Aromatic amine dehydrog 99.6 7.7E-14 2.6E-18 144.4 29.4 175 7-217 39-231 (361)
166 1jmx_B Amine dehydrogenase; ox 99.6 4.9E-15 1.7E-19 153.1 20.2 235 8-282 30-328 (349)
167 2oiz_A Aromatic amine dehydrog 99.6 7.2E-14 2.5E-18 144.7 25.6 191 30-279 14-230 (361)
168 1jof_A Carboxy-CIS,CIS-muconat 99.6 5E-14 1.7E-18 146.6 19.5 262 18-344 38-340 (365)
169 3fvz_A Peptidyl-glycine alpha- 99.6 1.8E-13 6E-18 140.1 21.1 255 19-335 23-317 (329)
170 3azo_A Aminopeptidase; POP fam 99.6 2.3E-13 8E-18 153.9 24.2 162 59-278 20-225 (662)
171 4a5s_A Dipeptidyl peptidase 4 99.6 2.9E-14 1E-18 163.0 16.5 163 63-279 17-202 (740)
172 1q7f_A NHL, brain tumor CG1071 99.5 2.8E-12 9.4E-17 128.4 28.2 161 60-279 27-194 (286)
173 1qks_A Cytochrome CD1 nitrite 99.5 3.3E-12 1.1E-16 139.0 29.4 205 29-281 165-375 (567)
174 3fvz_A Peptidyl-glycine alpha- 99.5 2.5E-12 8.4E-17 131.5 25.2 179 62-280 23-228 (329)
175 2dg1_A DRP35, lactonase; beta 99.5 3.1E-12 1.1E-16 131.2 25.5 198 19-279 5-213 (333)
176 2gop_A Trilobed protease; beta 99.5 1.9E-12 6.7E-17 133.5 23.0 71 604-682 271-342 (347)
177 3pe7_A Oligogalacturonate lyas 99.5 7.5E-12 2.6E-16 131.3 24.2 251 8-322 69-366 (388)
178 2xdw_A Prolyl endopeptidase; a 99.4 1.7E-11 5.7E-16 139.5 27.9 68 604-671 343-416 (710)
179 2z2n_A Virginiamycin B lyase; 99.4 5.7E-10 2E-14 112.0 34.4 202 15-277 10-211 (299)
180 1q7f_A NHL, brain tumor CG1071 99.4 3.4E-11 1.2E-15 120.3 24.1 201 18-279 75-280 (286)
181 2dg1_A DRP35, lactonase; beta 99.4 6.2E-11 2.1E-15 121.4 24.9 214 10-278 35-262 (333)
182 2bkl_A Prolyl endopeptidase; m 99.4 1E-11 3.5E-16 140.8 20.0 205 17-278 118-348 (695)
183 2bkl_A Prolyl endopeptidase; m 99.4 2.9E-11 9.8E-16 137.1 23.5 66 607-672 329-400 (695)
184 3e5z_A Putative gluconolactona 99.4 1.3E-10 4.4E-15 116.8 24.7 167 52-279 18-202 (296)
185 3dsm_A Uncharacterized protein 99.3 9.2E-11 3.2E-15 119.6 22.5 182 39-279 15-212 (328)
186 1qks_A Cytochrome CD1 nitrite 99.3 1.2E-09 4.2E-14 118.8 32.1 215 8-279 186-421 (567)
187 3e5z_A Putative gluconolactona 99.3 1.4E-10 4.9E-15 116.4 21.2 212 6-278 14-245 (296)
188 3c5m_A Oligogalacturonate lyas 99.3 4.9E-11 1.7E-15 125.3 17.7 232 22-322 83-366 (396)
189 2xdw_A Prolyl endopeptidase; a 99.3 1.7E-10 5.8E-15 131.2 22.2 210 18-281 123-370 (710)
190 2mad_H Methylamine dehydrogena 99.3 9.6E-09 3.3E-13 106.1 32.9 193 26-279 27-243 (373)
191 1rwi_B Serine/threonine-protei 99.2 1.3E-09 4.4E-14 107.7 22.9 201 18-280 65-265 (270)
192 2gop_A Trilobed protease; beta 99.2 4.6E-10 1.6E-14 115.5 19.3 185 20-279 59-291 (347)
193 1rwi_B Serine/threonine-protei 99.2 1.7E-09 6E-14 106.7 22.6 233 21-335 25-259 (270)
194 2qc5_A Streptogramin B lactona 99.2 3.4E-08 1.2E-12 98.9 32.4 200 17-277 17-216 (300)
195 1yr2_A Prolyl oligopeptidase; 99.2 1E-09 3.6E-14 125.2 23.7 65 607-671 373-443 (741)
196 3dsm_A Uncharacterized protein 99.2 6E-09 2.1E-13 106.1 25.2 229 8-300 73-321 (328)
197 1xip_A Nucleoporin NUP159; bet 99.2 1.8E-10 6.1E-15 117.9 13.3 182 20-268 38-233 (388)
198 2mad_H Methylamine dehydrogena 99.1 1.5E-08 5E-13 104.7 26.4 235 8-285 56-356 (373)
199 3no2_A Uncharacterized protein 99.1 2.7E-09 9.4E-14 105.3 19.2 192 30-282 4-198 (276)
200 3no2_A Uncharacterized protein 99.1 1.3E-08 4.6E-13 100.3 23.6 212 8-279 24-251 (276)
201 3sjl_D Methylamine dehydrogena 99.1 3.9E-08 1.3E-12 100.1 27.3 194 24-280 37-257 (386)
202 2qe8_A Uncharacterized protein 99.1 8.9E-09 3E-13 105.6 22.2 118 20-150 17-156 (343)
203 3hrp_A Uncharacterized protein 99.0 2.2E-08 7.7E-13 104.9 23.7 219 20-281 131-356 (409)
204 3c75_H MADH, methylamine dehyd 99.0 2.9E-08 9.8E-13 103.0 23.9 190 29-279 82-295 (426)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 2.5E-08 8.4E-13 100.8 21.5 205 18-280 69-300 (314)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 4.2E-08 1.4E-12 99.1 23.1 212 15-281 13-258 (314)
207 3sjl_D Methylamine dehydrogena 99.0 5.2E-08 1.8E-12 99.2 22.6 238 8-286 68-370 (386)
208 3c75_H MADH, methylamine dehyd 98.9 6.9E-08 2.4E-12 100.2 21.7 238 7-285 107-408 (426)
209 3g4e_A Regucalcin; six bladed 98.9 1E-07 3.5E-12 95.4 22.4 196 18-269 52-262 (297)
210 3g4e_A Regucalcin; six bladed 98.9 1.5E-07 5E-12 94.3 23.4 215 12-283 5-233 (297)
211 1yr2_A Prolyl oligopeptidase; 98.9 2.1E-08 7.1E-13 114.4 19.2 203 18-278 161-392 (741)
212 3iuj_A Prolyl endopeptidase; h 98.9 1.8E-08 6E-13 113.9 17.8 207 17-280 126-360 (693)
213 3hrp_A Uncharacterized protein 98.9 2.4E-07 8.2E-12 97.1 25.0 164 63-279 131-298 (409)
214 2z2n_A Virginiamycin B lyase; 98.9 3.5E-07 1.2E-11 91.3 25.1 200 18-278 55-254 (299)
215 1mda_H Methylamine dehydrogena 98.8 6.8E-08 2.3E-12 98.6 17.5 233 7-283 54-350 (368)
216 2qc5_A Streptogramin B lactona 98.8 1.4E-06 4.7E-11 87.0 26.0 200 18-278 60-259 (300)
217 1xip_A Nucleoporin NUP159; bet 98.8 5.8E-08 2E-12 99.3 15.6 145 17-202 86-230 (388)
218 1mda_H Methylamine dehydrogena 98.8 1.2E-07 4.2E-12 96.7 16.5 78 604-682 271-359 (368)
219 3iuj_A Prolyl endopeptidase; h 98.8 4.2E-07 1.4E-11 102.6 22.5 68 604-672 333-408 (693)
220 2ghs_A AGR_C_1268P; regucalcin 98.8 1.7E-06 5.9E-11 87.7 25.0 198 20-278 49-259 (326)
221 2ghs_A AGR_C_1268P; regucalcin 98.8 1.2E-06 4.2E-11 88.7 23.5 193 19-269 89-292 (326)
222 2hz6_A Endoplasmic reticulum t 98.7 2.6E-09 8.9E-14 110.5 3.2 183 30-282 8-195 (369)
223 3dr2_A Exported gluconolactona 98.7 3E-07 1E-11 92.4 17.3 208 10-279 35-267 (305)
224 1yiq_A Quinohemoprotein alcoho 98.7 1.7E-06 5.8E-11 97.0 23.8 53 605-657 483-537 (689)
225 2iwa_A Glutamine cyclotransfer 98.6 3.6E-06 1.2E-10 80.9 21.3 225 8-279 8-237 (266)
226 1yiq_A Quinohemoprotein alcoho 98.6 3.5E-06 1.2E-10 94.4 23.8 62 617-679 454-515 (689)
227 1kb0_A Quinohemoprotein alcoho 98.6 4.3E-06 1.5E-10 93.4 22.8 60 617-677 456-515 (677)
228 1kb0_A Quinohemoprotein alcoho 98.5 2.6E-05 8.7E-10 87.2 27.6 226 30-278 127-422 (677)
229 2qe8_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 89.9 14.9 221 17-275 64-317 (343)
230 3dr2_A Exported gluconolactona 98.5 3E-06 1E-10 85.0 17.5 198 12-273 78-301 (305)
231 2ece_A 462AA long hypothetical 98.5 8.3E-06 2.8E-10 83.5 19.7 256 27-322 89-396 (462)
232 3nol_A Glutamine cyclotransfer 98.5 6E-06 2E-10 78.3 17.4 209 9-269 31-245 (262)
233 1npe_A Nidogen, entactin; glyc 98.4 6.1E-05 2.1E-09 73.7 24.6 202 20-283 36-242 (267)
234 3q7m_A Lipoprotein YFGL, BAMB; 98.4 0.0001 3.5E-09 76.2 27.2 201 30-281 52-260 (376)
235 3hxj_A Pyrrolo-quinoline quino 98.4 2.2E-06 7.6E-11 87.0 13.2 181 23-279 23-203 (330)
236 3mbr_X Glutamine cyclotransfer 98.4 4.1E-05 1.4E-09 71.9 19.8 212 9-269 9-224 (243)
237 3nok_A Glutaminyl cyclase; bet 98.3 2.5E-05 8.7E-10 73.9 16.1 209 10-268 44-254 (268)
238 3qqz_A Putative uncharacterize 98.2 0.00047 1.6E-08 65.8 24.5 231 13-278 20-252 (255)
239 1fwx_A Nitrous oxide reductase 98.2 2.4E-05 8.1E-10 83.2 15.0 262 29-322 99-403 (595)
240 3v64_C Agrin; beta propeller, 98.1 0.003 1E-07 64.1 30.2 209 20-287 73-283 (349)
241 2ece_A 462AA long hypothetical 98.1 0.00012 4E-09 75.1 18.9 214 22-267 140-399 (462)
242 3v65_B Low-density lipoprotein 98.1 0.0016 5.6E-08 67.2 27.0 210 19-287 115-326 (386)
243 4a2l_A BT_4663, two-component 98.1 0.0052 1.8E-07 70.3 33.3 213 22-280 175-387 (795)
244 1fwx_A Nitrous oxide reductase 98.0 3.3E-05 1.1E-09 82.1 13.1 183 7-216 120-361 (595)
245 4a2l_A BT_4663, two-component 98.0 0.0026 8.8E-08 72.9 30.3 205 22-279 133-339 (795)
246 1kv9_A Type II quinohemoprotei 98.0 0.00059 2E-08 76.1 23.9 65 613-678 433-497 (668)
247 1npe_A Nidogen, entactin; glyc 98.0 0.00081 2.8E-08 65.5 22.4 190 32-279 2-198 (267)
248 2hz6_A Endoplasmic reticulum t 97.9 8.1E-07 2.8E-11 91.7 -1.2 146 521-676 10-156 (369)
249 1ijq_A LDL receptor, low-densi 97.9 0.0087 3E-07 59.8 28.2 211 19-286 29-245 (316)
250 3v64_C Agrin; beta propeller, 97.9 0.0061 2.1E-07 61.8 27.1 200 19-279 33-234 (349)
251 1kv9_A Type II quinohemoprotei 97.8 0.0026 8.9E-08 70.9 24.0 53 605-657 466-520 (668)
252 2iwa_A Glutamine cyclotransfer 97.8 0.001 3.5E-08 63.8 17.7 174 51-284 9-186 (266)
253 3nok_A Glutaminyl cyclase; bet 97.8 0.0021 7E-08 61.0 18.8 172 52-284 44-215 (268)
254 3p5b_L Low density lipoprotein 97.7 0.026 8.8E-07 58.4 28.9 213 18-287 110-328 (400)
255 3v65_B Low-density lipoprotein 97.7 0.0055 1.9E-07 63.2 23.7 198 21-279 78-277 (386)
256 2p4o_A Hypothetical protein; p 97.7 0.0035 1.2E-07 62.4 21.5 208 20-278 32-241 (306)
257 2fp8_A Strictosidine synthase; 97.7 0.0027 9.2E-08 63.8 20.6 201 21-279 81-313 (322)
258 3sov_A LRP-6, low-density lipo 97.7 0.014 4.9E-07 58.1 25.5 208 21-286 36-245 (318)
259 3nol_A Glutamine cyclotransfer 97.7 0.0027 9.2E-08 60.2 18.2 171 52-284 32-206 (262)
260 3q7m_A Lipoprotein YFGL, BAMB; 97.6 0.0052 1.8E-07 63.2 21.8 188 30-281 102-298 (376)
261 2xe4_A Oligopeptidase B; hydro 97.6 0.0026 8.9E-08 72.1 20.9 116 21-149 175-305 (751)
262 2fp8_A Strictosidine synthase; 97.6 0.0035 1.2E-07 62.9 19.4 204 16-278 15-268 (322)
263 3v9f_A Two-component system se 97.6 0.064 2.2E-06 61.1 31.8 216 20-279 211-436 (781)
264 3hxj_A Pyrrolo-quinoline quino 97.6 0.00093 3.2E-08 67.3 14.4 176 31-277 107-282 (330)
265 3m0c_C LDL receptor, low-densi 97.5 0.037 1.3E-06 62.3 28.3 211 18-287 422-640 (791)
266 3v9f_A Two-component system se 97.5 0.22 7.4E-06 56.7 35.2 223 20-280 115-343 (781)
267 1ijq_A LDL receptor, low-densi 97.5 0.027 9.3E-07 56.1 24.2 184 41-279 10-195 (316)
268 1k3i_A Galactose oxidase precu 97.5 0.0039 1.3E-07 69.5 19.7 115 24-150 190-325 (656)
269 3mbr_X Glutamine cyclotransfer 97.5 0.0091 3.1E-07 56.0 18.8 173 52-284 10-184 (243)
270 2ad6_A Methanol dehydrogenase 97.5 0.036 1.2E-06 60.3 26.4 61 616-677 442-502 (571)
271 2p4o_A Hypothetical protein; p 97.4 0.02 6.7E-07 56.8 22.3 202 19-270 71-279 (306)
272 1w6s_A Methanol dehydrogenase 97.4 0.06 2E-06 58.6 26.6 61 616-677 451-511 (599)
273 3amr_A 3-phytase; beta-propell 97.3 0.099 3.4E-06 51.8 24.9 202 31-279 40-263 (355)
274 3p5b_L Low density lipoprotein 97.3 0.076 2.6E-06 54.8 25.6 192 33-280 85-278 (400)
275 3m0c_C LDL receptor, low-densi 97.3 0.053 1.8E-06 61.0 25.1 187 40-281 403-591 (791)
276 3sov_A LRP-6, low-density lipo 97.2 0.039 1.3E-06 54.9 21.4 184 40-279 12-197 (318)
277 1n7d_A LDL receptor, low-densi 97.2 0.0013 4.4E-08 73.6 11.3 205 20-282 406-617 (699)
278 4a0p_A LRP6, LRP-6, low-densit 97.0 0.2 6.9E-06 54.9 26.5 207 20-288 37-246 (628)
279 3s94_A LRP-6, low-density lipo 96.9 0.13 4.4E-06 56.4 23.3 208 19-286 39-250 (619)
280 2ad6_A Methanol dehydrogenase 96.8 0.054 1.9E-06 58.9 19.3 26 259-284 474-499 (571)
281 4hw6_A Hypothetical protein, I 96.8 0.11 3.7E-06 54.2 20.7 213 21-277 140-372 (433)
282 4a0p_A LRP6, LRP-6, low-densit 96.8 0.39 1.3E-05 52.6 25.9 191 33-282 8-200 (628)
283 3ei3_A DNA damage-binding prot 96.7 1.2 4E-05 52.5 30.8 77 19-95 553-636 (1158)
284 1k3i_A Galactose oxidase precu 96.6 0.039 1.3E-06 61.4 17.2 73 21-96 244-324 (656)
285 1flg_A Protein (quinoprotein e 96.6 0.076 2.6E-06 57.8 18.8 71 24-97 250-357 (582)
286 2p9w_A MAL S 1 allergenic prot 96.6 0.14 4.7E-06 50.3 18.4 166 19-216 12-215 (334)
287 2xe4_A Oligopeptidase B; hydro 96.5 0.16 5.4E-06 57.4 21.3 117 23-148 224-354 (751)
288 1flg_A Protein (quinoprotein e 96.5 0.1 3.4E-06 56.8 18.8 26 259-284 496-521 (582)
289 3tc9_A Hypothetical hydrolase; 96.5 0.074 2.5E-06 55.5 17.0 157 21-216 138-301 (430)
290 2p9w_A MAL S 1 allergenic prot 96.5 0.071 2.4E-06 52.3 15.4 178 62-279 12-215 (334)
291 4hw6_A Hypothetical protein, I 96.3 0.29 9.9E-06 51.0 20.3 240 14-278 176-432 (433)
292 2xbg_A YCF48-like protein; pho 96.2 0.59 2E-05 46.5 21.6 198 19-277 121-320 (327)
293 1w6s_A Methanol dehydrogenase 96.2 0.16 5.6E-06 55.2 18.3 25 259-283 483-507 (599)
294 3tc9_A Hypothetical hydrolase; 96.2 0.047 1.6E-06 57.0 13.4 158 64-279 138-301 (430)
295 3qqz_A Putative uncharacterize 96.1 1 3.4E-05 42.7 22.1 167 20-214 70-251 (255)
296 3s94_A LRP-6, low-density lipo 96.0 1 3.5E-05 49.2 23.5 200 20-280 349-552 (619)
297 3sre_A PON1, serum paraoxonase 95.7 1.2 4E-05 44.6 20.7 203 20-277 50-296 (355)
298 1n7d_A LDL receptor, low-densi 95.6 0.047 1.6E-06 60.9 11.2 164 22-223 455-621 (699)
299 3pbp_A Nucleoporin NUP82; beta 95.5 0.95 3.3E-05 45.8 18.6 166 27-212 28-208 (452)
300 3kya_A Putative phosphatase; s 95.4 1 3.5E-05 47.2 19.6 175 21-215 140-340 (496)
301 2ism_A Putative oxidoreductase 95.4 2.6 8.8E-05 42.3 23.9 108 19-136 30-153 (352)
302 3pbp_A Nucleoporin NUP82; beta 94.8 0.63 2.2E-05 47.1 15.1 123 21-145 67-209 (452)
303 2xbg_A YCF48-like protein; pho 94.6 3.1 0.00011 41.1 20.2 160 17-214 160-320 (327)
304 3kya_A Putative phosphatase; s 94.4 0.47 1.6E-05 49.7 13.8 175 65-279 141-341 (496)
305 2xzh_A Clathrin heavy chain 1; 94.0 4.8 0.00016 39.2 25.1 209 25-286 72-297 (365)
306 3sre_A PON1, serum paraoxonase 93.9 3 0.0001 41.6 18.0 163 64-279 51-252 (355)
307 2xn4_A Kelch-like protein 2; s 93.8 1.8 6E-05 42.3 16.4 64 30-96 61-134 (302)
308 2vpj_A Kelch-like protein 12; 93.5 2.5 8.5E-05 41.1 16.7 107 30-150 62-186 (301)
309 1bpo_A Protein (clathrin); cla 93.4 7.8 0.00027 39.4 26.6 209 25-286 71-296 (494)
310 3ii7_A Kelch-like protein 7; p 93.2 4.1 0.00014 39.7 17.9 64 30-96 55-128 (306)
311 1tl2_A L10, protein (tachylect 92.0 7.2 0.00025 35.6 18.1 139 31-211 4-158 (236)
312 4asc_A Kelch repeat and BTB do 91.2 12 0.0004 36.5 18.8 68 26-96 41-127 (315)
313 2g8s_A Glucose/sorbosone dehyd 91.1 6.4 0.00022 39.3 16.5 72 20-94 18-106 (353)
314 2xzh_A Clathrin heavy chain 1; 90.9 12 0.00041 36.5 16.7 144 2-150 130-292 (365)
315 1cru_A Protein (soluble quinop 90.7 7 0.00024 40.6 16.8 68 608-675 369-448 (454)
316 3amr_A 3-phytase; beta-propell 90.7 7.3 0.00025 38.5 15.6 158 77-279 41-210 (355)
317 1zgk_A Kelch-like ECH-associat 90.6 6.1 0.00021 38.5 15.6 107 30-150 70-195 (308)
318 1xi4_A Clathrin heavy chain; a 90.5 13 0.00046 43.9 19.6 210 27-284 73-294 (1630)
319 1zgk_A Kelch-like ECH-associat 90.2 8 0.00027 37.6 16.1 65 30-97 24-101 (308)
320 3a9g_A Putative uncharacterize 90.0 17 0.00056 36.3 23.0 111 19-136 28-153 (354)
321 2woz_A Kelch repeat and BTB do 88.9 17 0.00059 35.3 17.4 67 27-96 53-137 (318)
322 2xn4_A Kelch-like protein 2; s 88.6 5.8 0.0002 38.4 13.6 107 30-150 108-231 (302)
323 3das_A Putative oxidoreductase 88.6 16 0.00054 36.2 16.5 77 62-148 31-116 (347)
324 2g8s_A Glucose/sorbosone dehyd 88.1 13 0.00044 37.0 16.0 50 607-656 288-340 (353)
325 1bpo_A Protein (clathrin); cla 88.0 25 0.00086 35.8 18.7 144 2-150 129-291 (494)
326 2vpj_A Kelch-like protein 12; 87.3 10 0.00035 36.6 14.4 107 30-150 112-233 (301)
327 3ii7_A Kelch-like protein 7; p 87.0 8.8 0.0003 37.2 13.8 148 30-217 101-273 (306)
328 3das_A Putative oxidoreductase 86.4 8.8 0.0003 38.1 13.2 127 12-139 24-161 (347)
329 1cru_A Protein (soluble quinop 86.3 34 0.0011 35.4 21.7 114 19-137 26-163 (454)
330 1tl2_A L10, protein (tachylect 86.1 2.2 7.5E-05 38.9 7.7 108 20-142 41-157 (236)
331 2be1_A Serine/threonine-protei 84.6 2.5 8.7E-05 41.8 8.2 110 32-150 11-132 (339)
332 4asc_A Kelch repeat and BTB do 84.3 31 0.0011 33.3 19.5 60 33-96 7-77 (315)
333 2ism_A Putative oxidoreductase 83.5 37 0.0013 33.6 19.3 63 19-83 74-153 (352)
334 2zwa_A Leucine carboxyl methyl 82.2 20 0.0007 39.5 15.3 110 29-150 396-524 (695)
335 2woz_A Kelch repeat and BTB do 80.8 20 0.00068 34.9 13.3 107 30-150 109-233 (318)
336 2uvk_A YJHT; unknown function, 78.8 28 0.00095 34.4 13.9 53 30-85 65-128 (357)
337 2wg3_C Hedgehog-interacting pr 75.5 23 0.00078 36.8 12.2 119 20-139 14-160 (463)
338 1xi4_A Clathrin heavy chain; a 73.0 46 0.0016 39.6 14.5 148 2-152 129-293 (1630)
339 3a9g_A Putative uncharacterize 70.3 87 0.003 30.9 22.7 64 186-267 260-330 (354)
340 3ei3_A DNA damage-binding prot 70.0 1.8E+02 0.006 34.3 24.0 116 20-147 514-635 (1158)
341 4gq2_M Nucleoporin NUP120; bet 67.8 12 0.00042 43.0 8.7 30 605-634 244-273 (950)
342 2uvk_A YJHT; unknown function, 67.5 60 0.002 31.9 13.1 50 41-93 168-224 (357)
343 2zwa_A Leucine carboxyl methyl 60.8 48 0.0017 36.5 11.7 114 30-150 451-579 (695)
344 3f7f_A Nucleoporin NUP120; nuc 58.5 7.3 0.00025 42.4 4.2 31 606-636 229-259 (729)
345 4fhn_B Nucleoporin NUP120; pro 53.0 11 0.00039 44.4 5.2 30 605-634 246-275 (1139)
346 3zwu_A Alkaline phosphatase PH 52.0 35 0.0012 36.5 8.2 53 604-656 483-548 (592)
347 3s25_A Hypothetical 7-bladed b 51.4 1.7E+02 0.0058 28.0 18.8 104 25-149 58-177 (302)
348 4gq2_M Nucleoporin NUP120; bet 49.8 21 0.00072 41.1 6.5 38 20-57 236-273 (950)
349 3ott_A Two-component system se 49.6 3E+02 0.01 30.3 22.6 193 19-281 62-262 (758)
350 3qhy_B Beta-lactamase inhibito 46.5 1.9E+02 0.0066 27.2 20.6 184 20-279 24-207 (282)
351 4a9v_A PHOX; hydrolase, beta-p 43.2 55 0.0019 34.6 7.8 53 604-656 483-548 (592)
352 3s25_A Hypothetical 7-bladed b 39.0 2.6E+02 0.009 26.6 14.4 26 255-280 190-217 (302)
353 4fhn_B Nucleoporin NUP120; pro 38.9 25 0.00084 41.5 5.0 38 20-57 238-275 (1139)
354 3qhy_B Beta-lactamase inhibito 38.5 2.6E+02 0.0088 26.3 21.4 183 21-279 64-246 (282)
355 3f7f_A Nucleoporin NUP120; nuc 37.5 46 0.0016 36.3 6.3 35 21-57 223-257 (729)
356 3b7f_A Glycosyl hydrolase, BNR 37.3 3.2E+02 0.011 27.0 21.0 27 186-213 233-259 (394)
357 3sbq_A Nitrous-oxide reductase 37.1 57 0.002 34.4 6.6 66 604-670 330-409 (638)
358 3sbq_A Nitrous-oxide reductase 36.3 1E+02 0.0035 32.6 8.3 72 20-95 323-408 (638)
359 3zwu_A Alkaline phosphatase PH 33.9 1.2E+02 0.004 32.5 8.7 58 23-82 479-548 (592)
360 2be1_A Serine/threonine-protei 30.6 69 0.0024 31.4 5.9 64 608-671 10-78 (339)
361 2wg3_C Hedgehog-interacting pr 29.1 4.8E+02 0.016 26.7 18.2 29 64-94 15-44 (463)
362 4a9v_A PHOX; hydrolase, beta-p 28.9 2.2E+02 0.0074 30.2 9.5 60 20-82 476-548 (592)
363 1sqj_A OXG-RCBH, oligoxylogluc 24.4 7.5E+02 0.026 27.3 21.7 63 19-83 14-83 (789)
364 3q6k_A 43.2 kDa salivary prote 23.5 5.5E+02 0.019 25.4 17.3 181 20-216 87-306 (381)
365 4hvt_A Ritya.17583.B, post-pro 21.0 63 0.0021 35.6 3.9 73 598-671 131-227 (711)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-62 Score=549.27 Aligned_cols=542 Identities=21% Similarity=0.288 Sum_probs=424.9
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
.++.+.|+||++.|++++|+|||++||+|+.|++|+|||. +++++..+ .+|...|++++|+|+ +++|++++.|++|
T Consensus 6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l-~gh~~~V~~l~fspd--g~~las~~~d~~i 81 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPD--GQTIASASDDKTV 81 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSCE
T ss_pred cEEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE-eCCCCCEEEEEECCC--CCEEEEEeCCCEE
Confidence 3456779999999999999999999999999999999994 78888888 799999999999999 5999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC---------
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH--------- 159 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--------- 159 (732)
+|||+.. .++..+.+|...|.+++|+|++ ++|++++.|+.+++|+..............
T Consensus 82 ~vWd~~~-----------~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (577)
T 2ymu_A 82 KLWNRNG-----------QLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 149 (577)
T ss_dssp EEEETTS-----------CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECT
T ss_pred EEEECCC-----------CEEEEEECCCCCEEEEEECCCC-CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeec
Confidence 9999752 3378899999999999999955 899999999999999976543211000000
Q ss_pred ---------cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004739 160 ---------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 230 (732)
Q Consensus 160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 230 (732)
......++.... ........+...|.++.|+|+ +.+|++++.|+.|++||.. .+.+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w~~~-~~~~~~~------- 217 (577)
T 2ymu_A 150 DGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRN-GQLLQTL------- 217 (577)
T ss_dssp TSSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSEEEEECTT-SCEEEEE-------
T ss_pred CCccceecccccceeccccce---eeeeeccCCCcceeeeeecCC-CCEEEEEcCCCEEEEEeCC-CcEEEEE-------
Confidence 000011111111 112223346678999999999 7899999999999999964 3222221
Q ss_pred CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCC
Q 004739 231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP 310 (732)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (732)
.+|.. .|.+++|+|++++|++++.|+.|++||... +... .+.++...+.
T Consensus 218 -------------~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~----------------~~~~~~~~v~ 266 (577)
T 2ymu_A 218 -------------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ----------------TLTGHSSSVN 266 (577)
T ss_dssp -------------ECCSS-CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEE----------------EECCCSSCEE
T ss_pred -------------ecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEE----------------EEecCCCCEE
Confidence 34544 599999999999999999999999999653 2111 2345566778
Q ss_pred CCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CCccchhhhhhHHHHhhc
Q 004739 311 IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GPMLRHECLCIRAALLLK 385 (732)
Q Consensus 311 ~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~ 385 (732)
+++|+|+|+.++ +++.|+.+++ |+.. +.. ...+.+|...+ +|++. .+++++.++++
T Consensus 267 ~v~~~~d~~~l~---~~~~d~~i~~-----w~~~-~~~--------~~~~~~h~~~v~~~~~~~~~~--~l~t~~~d~~i 327 (577)
T 2ymu_A 267 GVAFRPDGQTIA---SASDDKTVKL-----WNRN-GQL--------LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTV 327 (577)
T ss_dssp EEEECTTSSEEE---EEETTSCEEE-----EETT-SCE--------EEEECCCSSCEEEEEECTTSS--EEEEEETTSCE
T ss_pred EEEEcCCCCEEE---EEeCCCEEEE-----EeCC-CcE--------EEEEecCCCCeEEEEECCCCC--EEEEEeCCCeE
Confidence 888999999999 9999999999 8754 331 12345565554 77776 78888999999
Q ss_pred cccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhcc
Q 004739 386 RKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKN 465 (732)
Q Consensus 386 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~ 465 (732)
++|+...... ..+... ...+..++++|+ ++.|++++.|+.
T Consensus 328 ~~w~~~~~~~-------~~~~~~----------------------~~~v~~~~~s~~-----------g~~l~~~~~dg~ 367 (577)
T 2ymu_A 328 KLWNRNGQHL-------QTLTGH----------------------SSSVWGVAFSPD-----------GQTIASASDDKT 367 (577)
T ss_dssp EEEETTSCEE-------EEECCC----------------------SSCEEEEEECTT-----------SSEEEEEETTSE
T ss_pred EEEeCCCCee-------EEEeCC----------------------CCCEEEEEECCC-----------CCEEEEEeCCCE
Confidence 9998541110 000000 001345678887 567888899999
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcce
Q 004739 466 NKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNV 543 (732)
Q Consensus 466 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~ 543 (732)
+++|+ .+++++ .++..|... +++|+||+ +.+++++.|+.+++|+.++++..
T Consensus 368 v~~~~-------~~~~~~--~~~~~~~~~v~~~~~s~dg------------------~~l~~~~~d~~v~~~~~~~~~~~ 420 (577)
T 2ymu_A 368 VKLWN-------RNGQLL--QTLTGHSSSVRGVAFSPDG------------------QTIASASDDKTVKLWNRNGQLLQ 420 (577)
T ss_dssp EEEEE-------TTCCEE--EEEECCSSCEEEEEECTTS------------------SCEEEEETTSEEEEECTTCCEEE
T ss_pred EEEEc-------CCCCEE--EEecCCCCCeEEEEECCCC------------------CEEEEEeCCCEEEEEeCCCCEEE
Confidence 99998 334433 244555555 78999999 89999999999999999999999
Q ss_pred eeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEE
Q 004739 544 RIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIW 623 (732)
Q Consensus 544 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iW 623 (732)
.+.+|...|++++|+||+++|++++.++...+|+.. .+.++.+.+|...++++. |+||+++||+|+.|++|+||
T Consensus 421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~----~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVA----FSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEE----ECTTSCEEEEEETTSEEEEE
T ss_pred EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCCEEEEE----EcCCCCEEEEEeCCCEEEEE
Confidence 999999999999999999999999877777779864 458889999999866655 69999999999999999999
Q ss_pred EcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----hhHHHHHHHHHHHh
Q 004739 624 EKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----ADVLEAMESNQRKL 698 (732)
Q Consensus 624 d~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----~~~~~~~~~~~~~~ 698 (732)
| .++++++.+.+|...|++|+|+|++++|||++.|++|+|||. +++++.++.||.+++. +|...+++...|..
T Consensus 495 ~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 495 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp E-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred c-CCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 9 689999999999999999999999999999999999999995 6788889999999874 56666777777777
Q ss_pred hhccc
Q 004739 699 SRNRE 703 (732)
Q Consensus 699 ~~~~~ 703 (732)
.++||
T Consensus 573 i~~Wd 577 (577)
T 2ymu_A 573 VKLWN 577 (577)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77776
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-57 Score=508.49 Aligned_cols=509 Identities=14% Similarity=0.092 Sum_probs=369.2
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+.+..+.|.+|...|++++|+|||++||+|+.|++|+|||+.+++ ....+ .+|.+.|.+++|+|+ |++|++++.+
T Consensus 48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d--g~~l~~~~~~ 124 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE--SKRIAAVGEG 124 (611)
T ss_dssp CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT--SCEEEEEECC
T ss_pred CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCC--CCEEEEEECC
Confidence 456788899999999999999999999999999999999997543 34455 789999999999999 5899988865
Q ss_pred ----CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 86 ----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 86 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
++|++||... +...+.+|...|++++|+|+++..|++++.|++|++||..+.+.
T Consensus 125 ~~~~~~v~~wd~~~------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~---------- 182 (611)
T 1nr0_A 125 RERFGHVFLFDTGT------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF---------- 182 (611)
T ss_dssp SSCSEEEEETTTCC------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE----------
T ss_pred CCceeEEEEeeCCC------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE----------
Confidence 4788887532 25678899999999999997766899999999999999765431
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
.....+|...|.+++|+|+ +.+|++|+.|++|++||+.+++.+..+.. ...
T Consensus 183 ---------------~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~-------------~~~ 233 (611)
T 1nr0_A 183 ---------------KSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFED-------------DSL 233 (611)
T ss_dssp ---------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBC-------------TTS
T ss_pred ---------------eeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeecc-------------ccc
Confidence 1223457779999999999 88999999999999999988765433310 001
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCC----------------------CCceee--
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD----------------------ASKIMS-- 297 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----------------------~~~~~~-- 297 (732)
...+|.. .|++++|+|+|++|++++.|++|++||+.+++....+..... .++.+.
T Consensus 234 ~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~ 312 (611)
T 1nr0_A 234 KNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 312 (611)
T ss_dssp SSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred cccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence 1125655 699999999999999999999999999998654332211100 000000
Q ss_pred ---eccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CC
Q 004739 298 ---FTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GP 369 (732)
Q Consensus 298 ---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~ 369 (732)
....+.+|...+.+++|+|+|+.++ +++.|+++++ |++.++.... ....+|...+ ++
T Consensus 313 ~~~~~~~~~gh~~~v~~l~~spdg~~l~---s~s~D~~v~~-----Wd~~~~~~~~-------~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 313 LGSIDQVRYGHNKAITALSSSADGKTLF---SADAEGHINS-----WDISTGISNR-------VFPDVHATMITGIKTTS 377 (611)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEE---EEETTSCEEE-----EETTTCCEEE-------CSSCSCSSCEEEEEECT
T ss_pred CCCcceEEcCCCCCEEEEEEeCCCCEEE---EEeCCCcEEE-----EECCCCceee-------ecccCCcceEEEEEECC
Confidence 0112357888899999999999999 9999999999 9998776321 0012333322 33
Q ss_pred ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhc-------cCCC
Q 004739 370 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQC-------LDPS 442 (732)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~ 442 (732)
++ .+++++.|.++++|+........ .... ..... ++|+
T Consensus 378 ~~---~l~s~s~d~~v~~w~~~~~~~~~----------~~~~----------------------~~~~~~~~~~~~~s~d 422 (611)
T 1nr0_A 378 KG---DLFTVSWDDHLKVVPAGGSGVDS----------SKAV----------------------ANKLSSQPLGLAVSAD 422 (611)
T ss_dssp TS---CEEEEETTTEEEEECSSSSSSCT----------TSCC----------------------EEECSSCEEEEEECTT
T ss_pred CC---cEEEEEcCCceEEeecCCccccc----------ccee----------------------eeecCCCCcEEEEeCC
Confidence 32 45666777777777743100000 0000 00000 0011
Q ss_pred ChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcc
Q 004739 443 NSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDF 520 (732)
Q Consensus 443 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~ 520 (732)
+..++.+ .+..+++|+ .+++. ++ .+... +++|+|||
T Consensus 423 -----------g~~~~~~-~~~~v~~~~--------~~~~~---~~-~~~~~v~~va~spdg------------------ 460 (611)
T 1nr0_A 423 -----------GDIAVAA-CYKHIAIYS--------HGKLT---EV-PISYNSSCVALSNDK------------------ 460 (611)
T ss_dssp -----------SSCEEEE-ESSEEEEEE--------TTEEE---EE-ECSSCEEEEEECTTS------------------
T ss_pred -----------CcEEEEE-eCceEEEEe--------CCcee---ee-ecCCCceEEEEeCCC------------------
Confidence 0011111 223333442 11111 11 12222 68899999
Q ss_pred cCCCCCCCCcccccccccCCcc--eeeccCCCCccccccCCCCCCCCCCCCCCCCCcccccccccccee--Eeeeccccc
Q 004739 521 HTSVPGDEGRDVEANFLHGSLN--VRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQR--YVGHCNVGT 596 (732)
Q Consensus 521 ~~~~s~~~d~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~gh~~~~~ 596 (732)
+++++|+.|+.+++|++.+... ....+|...|++++|||||++||+++.++...+|+.....++... +.+|...+.
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~ 540 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 540 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccccee
Confidence 9999999999999999976432 233789999999999999999999988888888988764445443 455998866
Q ss_pred eeeecccccCCCCEEEEecCCCcEEEEEcCccc-EE-EEEecC-cccEEEEeecCCCCeEEEecCCCcEEEEcCC
Q 004739 597 DIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR-LI-KMLLGD-EAVVNCVQCHPFDCVVATSGIDNTIKIWTPS 668 (732)
Q Consensus 597 ~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~-~~-~~l~gH-~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~ 668 (732)
++. |||||++|||||.|++|+|||+.+++ ++ ..+.+| ...|++|+|+|++. |||+|.|++||+|++.
T Consensus 541 ~v~----fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 541 CVS----WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEE----ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEE----ECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 665 69999999999999999999999876 44 788899 89999999999998 9999999999999973
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-57 Score=510.15 Aligned_cols=496 Identities=22% Similarity=0.299 Sum_probs=393.9
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
.+.+++++|.+|..+|++++|+||+++||+++.|++|+|||+ +++.+..+ .+|...|.+++|+|+ +++|++++.|+
T Consensus 45 ~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~-~~~~~~v~~~~~s~d--~~~l~~~~~d~ 120 (577)
T 2ymu_A 45 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPD--GQTIASASDDK 120 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTS
T ss_pred CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEE-ECCCCCEEEEEECCC--CCEEEEEcCCC
Confidence 456788999999999999999999999999999999999995 67788888 799999999999999 59999999999
Q ss_pred cEEEEEcCCCCCCCC------------------------------CCCCCCCceeeccccCceeEEEEecCCCcEEEEEe
Q 004739 87 EVRLFNLSRFSGRGL------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~------------------------------~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 136 (732)
.+++|+......... .............|...|.++.++|++ .+|++++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 199 (577)
T 2ymu_A 121 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASAS 199 (577)
T ss_dssp CEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTS-SCEEEEE
T ss_pred ceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCC-CEEEEEc
Confidence 999999764211000 000011233455678889999999955 8899999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.|+.|++||..... +.....|...|.+++|+|+ +.+|++++.|+.|++||...
T Consensus 200 ~d~~v~~w~~~~~~--------------------------~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~~~ 252 (577)
T 2ymu_A 200 DDKTVKLWNRNGQL--------------------------LQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNG 252 (577)
T ss_dssp TTSEEEEECTTSCE--------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTS
T ss_pred CCCEEEEEeCCCcE--------------------------EEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeCCC
Confidence 99999999963321 1122346668999999999 78999999999999999643
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCcee
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM 296 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 296 (732)
+.+..+ .+|.. .|++++|+|++++|++++.|+.|++||... +...
T Consensus 253 -~~~~~~--------------------~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~------------ 297 (577)
T 2ymu_A 253 -QLLQTL--------------------TGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQ------------ 297 (577)
T ss_dssp -CEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEE------------
T ss_pred -CEEEEE--------------------ecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEE------------
Confidence 222221 44544 599999999999999999999999999654 2111
Q ss_pred eeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CCcc
Q 004739 297 SFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GPML 371 (732)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~ 371 (732)
.+.+|...+.+++|+|++..++ +++.|+.+++ |++..... ..+.+|...+ +|++
T Consensus 298 ----~~~~h~~~v~~~~~~~~~~~l~---t~~~d~~i~~-----w~~~~~~~---------~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 298 ----TLTGHSSSVWGVAFSPDGQTIA---SASDDKTVKL-----WNRNGQHL---------QTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp ----EECCCSSCEEEEEECTTSSEEE---EEETTSCEEE-----EETTSCEE---------EEECCCSSCEEEEEECTTS
T ss_pred ----EEecCCCCeEEEEECCCCCEEE---EEeCCCeEEE-----EeCCCCee---------EEEeCCCCCEEEEEECCCC
Confidence 2345666778888999999999 9999999999 88764331 2234454443 7777
Q ss_pred chhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHH
Q 004739 372 RHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVE 451 (732)
Q Consensus 372 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 451 (732)
+ .+++++.++.+++|+...... ..+.. +...+..++|+|+
T Consensus 357 ~--~l~~~~~dg~v~~~~~~~~~~-------~~~~~----------------------~~~~v~~~~~s~d--------- 396 (577)
T 2ymu_A 357 Q--TIASASDDKTVKLWNRNGQLL-------QTLTG----------------------HSSSVRGVAFSPD--------- 396 (577)
T ss_dssp S--EEEEEETTSEEEEEETTCCEE-------EEEEC----------------------CSSCEEEEEECTT---------
T ss_pred C--EEEEEeCCCEEEEEcCCCCEE-------EEecC----------------------CCCCeEEEEECCC---------
Confidence 6 778888899999998541100 00000 0011455678887
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCC
Q 004739 452 NIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG 529 (732)
Q Consensus 452 ~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d 529 (732)
++.|++++.|+.+++|+ .+++++ .++..|... .++|+||+ +.+++++.|
T Consensus 397 --g~~l~~~~~d~~v~~~~-------~~~~~~--~~~~~~~~~v~~~~~s~d~------------------~~l~~~~~d 447 (577)
T 2ymu_A 397 --GQTIASASDDKTVKLWN-------RNGQLL--QTLTGHSSSVWGVAFSPDD------------------QTIASASDD 447 (577)
T ss_dssp --SSCEEEEETTSEEEEEC-------TTCCEE--EEEECCSSCEEEEEECTTS------------------SEEEEEETT
T ss_pred --CCEEEEEeCCCEEEEEe-------CCCCEE--EEecCCCCCeEEEEECCCC------------------CEEEEEcCC
Confidence 57788999999999998 334433 244555555 78999999 899999999
Q ss_pred cccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCC
Q 004739 530 RDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGD 609 (732)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~ 609 (732)
+.+++|+.+++....+.+|...|++++|+||+++||+++.++..++|+.. .++++.+.+|...++++. |||||+
T Consensus 448 ~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~~~~~~~h~~~v~~l~----~s~dg~ 521 (577)
T 2ymu_A 448 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVA----FSPDGQ 521 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCEEEEEECCSSCEEEEE----ECTTSS
T ss_pred CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCEEEEEeCCCCCEEEEE----EcCCCC
Confidence 99999999999999999999999999999999999999877777889854 568899999999976665 699999
Q ss_pred EEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEc
Q 004739 610 YIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWT 666 (732)
Q Consensus 610 ~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~ 666 (732)
+||+|+.||+|+|||+ +++++.+|.||.+.|++|+|+|||++|+|+|.|++|++||
T Consensus 522 ~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 522 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999995 7999999999999999999999999999999999999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.4e-57 Score=505.00 Aligned_cols=532 Identities=13% Similarity=0.098 Sum_probs=388.3
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.+.+.+.+++|+|||++||+++ +++|+|||+.+++....+ .+|...|++++|+|+ |++|++|+.|++|+|||+.+.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~-~~h~~~v~~~~~spd--g~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEe-cCCCCceEEEEECCC--CcEEEEEeCCCCEEEeECCCC
Confidence 4578899999999999999998 569999999999888888 799999999999999 599999999999999999753
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
.. .....+.+|...|.+++|+|++ ++|++++.+ +.|++||....
T Consensus 92 ~~--------~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~~----------------------- 139 (611)
T 1nr0_A 92 TH--------ILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTS----------------------- 139 (611)
T ss_dssp TC--------CEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCB-----------------------
T ss_pred cc--------eeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCCC-----------------------
Confidence 32 2245778899999999999965 788787765 46888874321
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
.....+|...|.+++|+|++...|++|+.|++|++||..+.+.+..+ .+|.. .|+
T Consensus 140 ----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--------------------~~H~~-~V~ 194 (611)
T 1nr0_A 140 ----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTK-FVH 194 (611)
T ss_dssp ----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSS-CEE
T ss_pred ----cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee--------------------ccccC-ceE
Confidence 12345677899999999995557999999999999998765433222 55666 699
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchh
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKC 332 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~ 332 (732)
+++|+|+|++|++++.|++|++||+.+++....+.. ......+|...+.+++|+|+|+.++ +++.|++
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~---------~~~~~~~h~~~V~~v~~spdg~~l~---s~s~D~~ 262 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED---------DSLKNVAHSGSVFGLTWSPDGTKIA---SASADKT 262 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC---------TTSSSCSSSSCEEEEEECTTSSEEE---EEETTSE
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc---------ccccccccCCCEEEEEECCCCCEEE---EEeCCCe
Confidence 999999999999999999999999988653221100 0011236788899999999999999 9999999
Q ss_pred hHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhh--HHhHHHHhcCCCccc
Q 004739 333 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMA--IRDCYNARRIDSSSF 410 (732)
Q Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~ 410 (732)
+++ |++.+++... .+.... ........+..++ ..+++++.++.+++|+...... ...+|
T Consensus 263 v~l-----Wd~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~l~s~s~d~~i~~~~~~~~~~~~~~~gh---------- 323 (611)
T 1nr0_A 263 IKI-----WNVATLKVEK-TIPVGT-RIEDQQLGIIWTK--QALVSISANGFINFVNPELGSIDQVRYGH---------- 323 (611)
T ss_dssp EEE-----EETTTTEEEE-EEECCS-SGGGCEEEEEECS--SCEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEE-----EeCCCCceee-eecCCC-CccceeEEEEEcC--CEEEEEeCCCcEEEEeCCCCCcceEEcCC----------
Confidence 999 9988765321 000000 0000000000111 2567778889999998542110 00011
Q ss_pred hhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccc
Q 004739 411 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIY 490 (732)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~ 490 (732)
...+..++|+|+ ++.|++++.|+++++|+... +....+. ...
T Consensus 324 --------------------~~~v~~l~~spd-----------g~~l~s~s~D~~v~~Wd~~~------~~~~~~~-~~~ 365 (611)
T 1nr0_A 324 --------------------NKAITALSSSAD-----------GKTLFSADAEGHINSWDIST------GISNRVF-PDV 365 (611)
T ss_dssp --------------------SSCEEEEEECTT-----------SSEEEEEETTSCEEEEETTT------CCEEECS-SCS
T ss_pred --------------------CCCEEEEEEeCC-----------CCEEEEEeCCCcEEEEECCC------Cceeeec-ccC
Confidence 111556788997 67889999999999998432 2222110 012
Q ss_pred cccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCc---------------------------
Q 004739 491 RSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSL--------------------------- 541 (732)
Q Consensus 491 ~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~--------------------------- 541 (732)
|... +++|++++ .+++++.|+.+++|++.+..
T Consensus 366 h~~~v~~~~~s~~~-------------------~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 366 HATMITGIKTTSKG-------------------DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CSSCEEEEEECTTS-------------------CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred CcceEEEEEECCCC-------------------cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 2222 45555444 34556666666666643211
Q ss_pred ---------------ceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccc-cccceeEeeeccccceeeeccccc
Q 004739 542 ---------------NVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETV-IDMKQRYVGHCNVGTDIKQASFLG 605 (732)
Q Consensus 542 ---------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~~~~i~~~~f~s 605 (732)
...+ .|...+.+++|+|||++||+++.++..++|+.... ....+. .+|...++++. ||
T Consensus 427 ~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~----fs 500 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA----FS 500 (611)
T ss_dssp EEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE----EC
T ss_pred EEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE----EC
Confidence 1111 25567889999999999999988888888987653 122344 78988866665 69
Q ss_pred CCCCEEEEecCCCcEEEEEcCc-ccEEEE--EecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCC-Cc-cccCCC-
Q 004739 606 QRGDYIASGSDDGRWFIWEKQT-GRLIKM--LLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV-PS-IVSGGA- 679 (732)
Q Consensus 606 ~dg~~lasgs~Dg~i~iWd~~t-g~~~~~--l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~-~~-~~~~gh- 679 (732)
|||++||+|+.|++|++||+.+ ++++.. +.+|...|++|+|+|||++|||+|.|++|+||++.++. .. ..+.||
T Consensus 501 pdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~ 580 (611)
T 1nr0_A 501 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 580 (611)
T ss_dssp TTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSST
T ss_pred CCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCc
Confidence 9999999999999999999998 777665 34599999999999999999999999999999999875 34 578899
Q ss_pred CCCCc-----hhHHHHHHHHHHHhhhcccc
Q 004739 680 AGPDT-----ADVLEAMESNQRKLSRNREH 704 (732)
Q Consensus 680 ~~~~~-----~~~~~~~~~~~~~~~~~~~~ 704 (732)
.+.+. ++.. +++...+.+.++|+.
T Consensus 581 ~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 581 MSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 77764 3444 777888888888886
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.4e-50 Score=491.52 Aligned_cols=531 Identities=15% Similarity=0.145 Sum_probs=403.5
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
...+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.+++|+|+ |++|++++.|+.|++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKIW 684 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEEEE
Confidence 4567899999999999999999999999999999999999999999 799999999999999 5999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
|+.++ .++..+.+|...|.+++|+|+ +..++++++.|+.|++||+.+++.
T Consensus 685 d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~------------------- 735 (1249)
T 3sfz_A 685 DSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC------------------- 735 (1249)
T ss_dssp ETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-------------------
T ss_pred ECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-------------------
Confidence 99864 337888899999999999995 336889999999999999988752
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC-------------CCCcccccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYFC 237 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~ 237 (732)
+....+|...|.+++|+|+ +.+|++++.||.|++||+++.+....+..... ...|+. +.
T Consensus 736 ------~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s 807 (1249)
T 3sfz_A 736 ------RNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-WS 807 (1249)
T ss_dssp ------EEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-BC
T ss_pred ------hheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE-EC
Confidence 1222357779999999998 78999999999999999987654433221100 000000 00
Q ss_pred cc-----------------------ccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCc
Q 004739 238 PM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASK 294 (732)
Q Consensus 238 ~~-----------------------~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 294 (732)
+. .....+|.. .|.+++|+|+++++++++.||.|++||+.++....
T Consensus 808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~---------- 876 (1249)
T 3sfz_A 808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA---------- 876 (1249)
T ss_dssp TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE----------
T ss_pred CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee----------
Confidence 00 000013444 59999999999999999999999999998854322
Q ss_pred eeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHh---------------------------------
Q 004739 295 IMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARN--------------------------------- 341 (732)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~--------------------------------- 341 (732)
.+.+|...+.+++|+|+|..++ +++.|+.+++|.....
T Consensus 877 ------~~~~h~~~v~~v~~spdg~~l~---s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 877 ------DCRGHLSWVHGVMFSPDGSSFL---TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEE---EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred ------ecCCCccceEEEEECCCCCEEE---EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 2335666777788888888888 8888888888433220
Q ss_pred --hhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHH
Q 004739 342 --SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEA 419 (732)
Q Consensus 342 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (732)
....+...... .-......++|++. .++.++.++.+++|+........ .+..
T Consensus 948 ~~~~~~~~~~~~~------~~~i~~~~~sp~g~--~l~~g~~~g~i~i~d~~~~~~~~------~~~~------------ 1001 (1249)
T 3sfz_A 948 LIAGKTGQIDYLP------EAQVSCCCLSPHLE--YVAFGDEDGAIKIIELPNNRVFS------SGVG------------ 1001 (1249)
T ss_dssp EEEESSCCEEEEC------CSCEEEEEECTTSS--EEEEEETTSCCEEEETTTTSCEE------ECCC------------
T ss_pred EEecCcceEEEcc------cCcEEEEEEcCCCC--EEEEEcCCCCEEEEEcCCCceee------eccc------------
Confidence 11222210000 00011112355555 67777778888888854211100 0000
Q ss_pred HHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCC
Q 004739 420 LEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSD 497 (732)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~ 497 (732)
+...+..++|+|+ ++.+++++.|+.+++|+.. ++.... ...|... .+.
T Consensus 1002 ----------h~~~v~~l~~s~d-----------g~~l~s~~~dg~i~vwd~~------~~~~~~---~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 1002 ----------HKKAVRHIQFTAD-----------GKTLISSSEDSVIQVWNWQ------TGDYVF---LQAHQETVKDFR 1051 (1249)
T ss_dssp ----------CSSCCCCEEECSS-----------SSCEEEECSSSBEEEEETT------TTEEEC---CBCCSSCEEEEE
T ss_pred ----------CCCceEEEEECCC-----------CCEEEEEcCCCEEEEEECC------CCceEE---EecCCCcEEEEE
Confidence 0111556678887 5778889999999999843 333332 2233333 566
Q ss_pred CCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc-cCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 004739 498 ASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL-HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPY 576 (732)
Q Consensus 498 ~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 576 (732)
++|++ .+++++.|+.+++|++ +++....+.+|...|.+++|+||+++|++++.++...+|
T Consensus 1052 ~~~~~-------------------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1052 LLQDS-------------------RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp ECSSS-------------------EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred EcCCC-------------------cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 77765 4678889999999998 477888899999999999999999999999988888889
Q ss_pred ccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEE---------ecCcccEEEEeec
Q 004739 577 QPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKML---------LGDEAVVNCVQCH 647 (732)
Q Consensus 577 ~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l---------~gH~~~V~~v~fs 647 (732)
+... .+.+..+.+|...++++. |||||++||+|+.||+|++||+.+++++..+ .+|.+.|++++|+
T Consensus 1113 d~~~-~~~~~~l~~h~~~v~~~~----~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A 1113 SFDL-LSPLHELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp CSSS-SSCSBCCCCCSSCEEEEE----ECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred ECCC-cceeeeeccCCCcEEEEE----ECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEEC
Confidence 9877 778899999999877666 6999999999999999999999999988876 7899999999999
Q ss_pred CCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc
Q 004739 648 PFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT 684 (732)
Q Consensus 648 p~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~ 684 (732)
|++++|++++ |+|++||+.+++.+..+.+|.+++.
T Consensus 1188 ~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~ 1222 (1249)
T 3sfz_A 1188 PDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLK 1222 (1249)
T ss_dssp TTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCC
T ss_pred CCCCEEEECC--CeEEEEECCCCceeeeeeccCCccc
Confidence 9999999986 8999999999999999998877663
No 6
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-49 Score=459.53 Aligned_cols=533 Identities=8% Similarity=-0.009 Sum_probs=341.4
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
..||...|++++|+|++++||+|+.||+|+||+..+.+....+ .|...|.+++|+| + ++|++++.|++|++||+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g--~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-G--IYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-T--TEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-C--CEEEEEECcCeEEEEECC
Confidence 3489999999999999999999999999999999888776655 5888999999999 3 699999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
++. ++..+. |...|++++|+|++ ++|++|+.||.|++||+.+++.. -+.. ...
T Consensus 88 ~~~----------~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i--~~~ 140 (902)
T 2oaj_A 88 SQK----------VLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLS-------------SFKL--DNL 140 (902)
T ss_dssp TCS----------EEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEE-------------EEEE--CCH
T ss_pred CCc----------EEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccc-------------ccee--ccc
Confidence 642 245554 67899999999955 89999999999999999876411 0000 000
Q ss_pred ccc-cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 175 RSL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 175 ~~~-~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
... ....+|...|.+++|+|+++..|++|+.|+.| +||+++.+.+..+.....+...-. .... ....+|.. .|++
T Consensus 141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~h~~-~V~~ 216 (902)
T 2oaj_A 141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG-DFSE-KTNEKRTP-KVIQ 216 (902)
T ss_dssp HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS-TTCC-CTTSCBCC-CEEE
T ss_pred cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc-cccc-ccccccCC-CeEE
Confidence 000 23356778999999999756799999999999 999998765544422100000000 0000 00012323 6999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCCccee-e----ec-------------CCCCceeeeccCCCCccCCCCCCccC
Q 004739 254 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR-Y----TV-------------GDASKIMSFTPTLNGLELQPPIHDFL 315 (732)
Q Consensus 254 l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (732)
++|+|+|++|++++.||.|++||+++++..... . .+ ...+..++|.+.. .
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~------------~ 284 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN------------N 284 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS------------S
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC------------C
Confidence 999999999999999999999999986543221 0 01 1123333343211 1
Q ss_pred CCc-cccccccccCcc-------------------------hhhHHHH----HHHhhhhcCCCc-hhhhhH-hHHHHhcc
Q 004739 316 QTN-IRVRGEVATGLG-------------------------KCRMLVE----IARNSLEEGKHP-YYGIEA-CNEVLEGH 363 (732)
Q Consensus 316 ~~g-~~~~~~~~~~~d-------------------------~~~~l~~----~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 363 (732)
|++ ..++ +++.+ ....++. ...+.+..+... ....-. ....+.++
T Consensus 285 pd~~~ll~---sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 285 PEYTSLLI---SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp TTEEEEEE---EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred CCCCEEEE---eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 222 2222 22111 1111100 000111100000 000000 00011111
Q ss_pred cCCCCCccchhhhhhHHHHhhccccccchhhh---HHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccC
Q 004739 364 LSGIGPMLRHECLCIRAALLLKRKWKNDAQMA---IRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD 440 (732)
Q Consensus 364 ~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (732)
.+. ..++..+.++.+++|+...... ....+.. +.... ..+..++++
T Consensus 362 ~d~-------~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~--l~~~~----------------------~~v~~~~~s 410 (902)
T 2oaj_A 362 HNP-------GLILLILGNGEIETMLYPSGIFTDKASLFPQN--LSWLR----------------------PLATTSMAA 410 (902)
T ss_dssp BSC-------SEEEEEETTSCEEEEETTTCCEECCGGGSCGG--GTTBT----------------------TBEEEEEEE
T ss_pred CCc-------eeEEEEcCCCcEEEEECCCCCcccccccCCCc--ccccC----------------------CCeeEEEEE
Confidence 111 0223333466777776420000 0000000 00000 001112222
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhcc-CCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhh
Q 004739 441 PSNSVMAEKVENIKKHIAAAETEKN-NKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVE 517 (732)
Q Consensus 441 p~~~~~~~~~~~~~~~l~~~~~d~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~ 517 (732)
+.. ..+..+..+.. ...| .+.+|... +++|+||+
T Consensus 411 ~~~-----------~~~w~~~~~~~~~~~~-----------------~l~G~~~~v~sv~~spdg--------------- 447 (902)
T 2oaj_A 411 SVP-----------NKLWLGALSAAQNKDY-----------------LLKGGVRTKRQKLPAEYG--------------- 447 (902)
T ss_dssp EEE-----------HHHHHHHHHTTBCCCC-----------------SCCCSBCCCCCCCCCSEE---------------
T ss_pred EcC-----------HHHHHHHHhcccCCCC-----------------cccCCcCCCCcccccccC---------------
Confidence 211 11121111110 0001 22333333 67899999
Q ss_pred hcccCCCCCCCCcccccccccCCcce---ee----c-----cCCCCccccccCCCCCCCCCCCCCCCCCccccccc----
Q 004739 518 VDFHTSVPGDEGRDVEANFLHGSLNV---RI----H-----RRGDSARETVDANGSSGSPSSSSQNDRIPYQPETV---- 581 (732)
Q Consensus 518 ~~~~~~~s~~~d~~~~~~~~~~~~~~---~~----~-----~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~---- 581 (732)
+++++++.|+++++|++...... .+ . +|...|++++|||||++||+++.++..++|+..+.
T Consensus 448 ---~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 448 ---TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp ---EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred ---cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 99999999999999998543221 11 1 78889999999999999999998888888987653
Q ss_pred ----------------------------------------cccceeEeeeccccceeeecccccCCCCEEEEecCCCcEE
Q 004739 582 ----------------------------------------IDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWF 621 (732)
Q Consensus 582 ----------------------------------------~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~ 621 (732)
++++..+.+|...++++. ||||| +||+|+.|++|+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva----fSpdG-~lAsgs~D~tv~ 599 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN----NSNIG-FVGIAYAAGSLM 599 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE----ECBTS-EEEEEETTSEEE
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE----ecCCc-EEEEEeCCCcEE
Confidence 134678899999977666 69999 999999999999
Q ss_pred EEEcCcccEEE-----EEe-cCcccEEEEeec-----CCC---CeEEEecCCCcEEEEcC---CCCCCccccCCCC
Q 004739 622 IWEKQTGRLIK-----MLL-GDEAVVNCVQCH-----PFD---CVVATSGIDNTIKIWTP---SASVPSIVSGGAA 680 (732)
Q Consensus 622 iWd~~tg~~~~-----~l~-gH~~~V~~v~fs-----p~~---~~l~S~s~D~~i~vW~~---~~~~~~~~~~gh~ 680 (732)
|||+++++++. .+. ||++.|++|+|+ ||| ++|+|++.|++|++||+ .+++....+.||.
T Consensus 600 lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 600 LIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp EEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred EEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 99999888764 343 999999999999 886 79999999999999999 7888888888874
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-48 Score=474.80 Aligned_cols=539 Identities=15% Similarity=0.151 Sum_probs=384.1
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
.+.+.+..+.+|...|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+.++.++++|+.|+
T Consensus 645 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 456778889999999999999999999999999999999999999999999 7999999999999965467999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC-------------
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP------------- 153 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~------------- 153 (732)
.|++||+.++ .++..+.+|...|++++|+|++ ++|++++.||.|++||+.+++...
T Consensus 724 ~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 792 (1249)
T 3sfz_A 724 FLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792 (1249)
T ss_dssp CEEEEETTSS----------SEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred eEEEEECCCc----------chhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCC
Confidence 9999999864 3367888999999999999954 899999999999999998764210
Q ss_pred ---------CCCCCCc---------ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC
Q 004739 154 ---------PAGSSHQ---------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 154 ---------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~ 215 (732)
....... .....+|+..++.... ....+|...|.+++|+|+ +.++++++.|+.|++||+.
T Consensus 793 ~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA-EIHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp ---CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE-EEECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETT
T ss_pred ccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee-EEcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcC
Confidence 0000001 1123344444433221 112356778999999999 7899999999999999999
Q ss_pred CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee--------
Q 004739 216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY-------- 287 (732)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------- 287 (732)
+...+..+ .+|.. .|++++|+|+|++|++++.||.|++|++.+........
T Consensus 871 ~~~~~~~~--------------------~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 871 SRLKVADC--------------------RGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp TTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCceeeec--------------------CCCcc-ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 87544333 45655 69999999999999999999999999976421110000
Q ss_pred -ec--------C--CCCceeeecc--CCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhh-cCCCchhhh
Q 004739 288 -TV--------G--DASKIMSFTP--TLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLE-EGKHPYYGI 353 (732)
Q Consensus 288 -~~--------~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~-~~~~~~~~~ 353 (732)
.. . .......... ........+.+++++|+|..++ +++.++.+.++........ .-.....
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~---~g~~~g~i~i~d~~~~~~~~~~~~h~~-- 1004 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA---FGDEDGAIKIIELPNNRVFSSGVGHKK-- 1004 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE---EEETTSCCEEEETTTTSCEEECCCCSS--
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE---EEcCCCCEEEEEcCCCceeeecccCCC--
Confidence 00 0 0000000000 0001123455566666666666 6666666665222111110 0000000
Q ss_pred hHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHH
Q 004739 354 EACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 433 (732)
Q Consensus 354 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (732)
.-..-.++|+++ .+++++.|+.+++|+........ ... . ...
T Consensus 1005 -------~v~~l~~s~dg~--~l~s~~~dg~i~vwd~~~~~~~~-------~~~-~---------------------~~~ 1046 (1249)
T 3sfz_A 1005 -------AVRHIQFTADGK--TLISSSEDSVIQVWNWQTGDYVF-------LQA-H---------------------QET 1046 (1249)
T ss_dssp -------CCCCEEECSSSS--CEEEECSSSBEEEEETTTTEEEC-------CBC-C---------------------SSC
T ss_pred -------ceEEEEECCCCC--EEEEEcCCCEEEEEECCCCceEE-------Eec-C---------------------CCc
Confidence 000112245554 56666666667777643111000 000 0 000
Q ss_pred HHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCCCCCCC
Q 004739 434 IAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSD 511 (732)
Q Consensus 434 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~ 511 (732)
+....++|+ ..+++++.|+.+++|+.. +|++.. .+..|... +++|+||+
T Consensus 1047 v~~~~~~~~------------~~l~~~~~dg~v~vwd~~------~~~~~~--~~~~~~~~v~~~~~s~d~--------- 1097 (1249)
T 3sfz_A 1047 VKDFRLLQD------------SRLLSWSFDGTVKVWNVI------TGRIER--DFTCHQGTVLSCAISSDA--------- 1097 (1249)
T ss_dssp EEEEEECSS------------SEEEEEESSSEEEEEETT------TTCCCE--EEECCSSCCCCEEECSSS---------
T ss_pred EEEEEEcCC------------CcEEEEECCCcEEEEECC------CCceeE--EEcccCCcEEEEEECCCC---------
Confidence 333455663 335677788889998742 333222 33445444 78899999
Q ss_pred hhhhhhhcccCCCCCCCCccccccccc-CCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeE--
Q 004739 512 YDEEVEVDFHTSVPGDEGRDVEANFLH-GSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRY-- 588 (732)
Q Consensus 512 ~~~~~~~~~~~~~s~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 588 (732)
+.+++++.|+.+++|++. +.....+.+|...|.+++|+|||++||+++.++...+|+..+ .+.+..+
T Consensus 1098 ---------~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~-~~~~~~~~~ 1167 (1249)
T 3sfz_A 1098 ---------TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD-GQLLHSCAP 1167 (1249)
T ss_dssp ---------SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS-SCCCCCCCC
T ss_pred ---------CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEecc
Confidence 899999999999999985 677888899999999999999999999998888888899876 5555554
Q ss_pred -------eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCc
Q 004739 589 -------VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNT 661 (732)
Q Consensus 589 -------~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~ 661 (732)
.+|...++++. |||||++|++++ |+|++||+.+|+++..+.+|...|++++|+|++.+|++++.||.
T Consensus 1168 ~~~~~~~~~~~~~v~~l~----fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~ 1241 (1249)
T 3sfz_A 1168 ISVEEGTATHGGWVTDVC----FSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGI 1241 (1249)
T ss_dssp CC-------CCSCCCEEE----ECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCC
T ss_pred ccccccccccCceEEEEE----ECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcE
Confidence 67888866665 699999999996 89999999999999999999999999999999999999999999
Q ss_pred EEEEcCC
Q 004739 662 IKIWTPS 668 (732)
Q Consensus 662 i~vW~~~ 668 (732)
|++|++.
T Consensus 1242 v~vw~l~ 1248 (1249)
T 3sfz_A 1242 LYILQVL 1248 (1249)
T ss_dssp EEEECCC
T ss_pred EEEEeec
Confidence 9999974
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.8e-49 Score=442.65 Aligned_cols=521 Identities=12% Similarity=0.096 Sum_probs=392.2
Q ss_pred cccEeeeccCCc-eeEEEEcC--CCCEEEEEeCCCcEEEEeCCCC--------eeEEEEccCCCcCeEEEEEecCCCCCE
Q 004739 10 SQERELEGHQGC-VNAISWNS--KGSLLISGSDDTHINVWSYSSR--------KLLHSIETGHSANVFCTKFVPETSDEL 78 (732)
Q Consensus 10 ~~~~~l~~h~~~-V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~--------~~~~~~~~~h~~~V~~~~~s~~~~g~~ 78 (732)
+..+.+.+|... |++++|+| ++++||+|+.||+|+|||+.++ +.+..+ ..|...|.+++|+|+ +++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~ 130 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFE--GRR 130 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTT--SSE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCC--CCE
Confidence 678899999999 99999999 9999999999999999999754 666667 689999999999999 589
Q ss_pred EEEEECC----CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCC
Q 004739 79 VVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP 154 (732)
Q Consensus 79 l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~ 154 (732)
|++++.+ +.|++||.. .++..+.+|...|.+++|+|++..++++++.|+.|++||+.+.+.
T Consensus 131 l~~~~~~~~~~~~v~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--- 195 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWDSG------------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--- 195 (615)
T ss_dssp EEEEECCSSCSEEEEETTTC------------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE---
T ss_pred EEEeccCCCCccEEEEEECC------------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce---
Confidence 9999987 689999843 236788899999999999997755899999999999999877642
Q ss_pred CCCCCcccceEEeeccCCccccccCCCCCcc---ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004739 155 AGSSHQECRNILLDLRCGAKRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 231 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 231 (732)
+.....|.. .|.+++|+|+++++|++++.|+.|++||+++++.+..+..
T Consensus 196 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------ 247 (615)
T 1pgu_A 196 ----------------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED------ 247 (615)
T ss_dssp ----------------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB------
T ss_pred ----------------------eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc------
Confidence 111223555 8999999998567999999999999999998765443310
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 311 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (732)
. ..+|.. .|.+++|+ ++++|++++.||.|++||+.+++....+..+. ......+..
T Consensus 248 ------~----~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~ 303 (615)
T 1pgu_A 248 ------D----QEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVG 303 (615)
T ss_dssp ------T----TBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT------------TCGGGCEEE
T ss_pred ------c----ccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC------------CcccCceeE
Confidence 0 003444 69999999 99999999999999999999865433222211 112223344
Q ss_pred CccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCC-CccchhhhhhHHHHhhcccccc
Q 004739 312 HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-PMLRHECLCIRAALLLKRKWKN 390 (732)
Q Consensus 312 ~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~w~~ 390 (732)
+.+. ++..++ +++.++.+.+ |++..+... ..+.+|...+. -.. +. +++++.|+.+++|+.
T Consensus 304 ~~~~-~~~~l~---~~~~~g~i~~-----~d~~~~~~~--------~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 304 VVAT-GNGRII---SLSLDGTLNF-----YELGHDEVL--------KTISGHNKGITALTV-NP-LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEE-ETTEEE---EEETTSCEEE-----EETTEEEEE--------EEECCCSSCEEEEET-TT-TEEEETTSCEEETTT
T ss_pred EEeC-CCCeEE---EEECCCCEEE-----EECCCCcEE--------EEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEc
Confidence 4443 778888 8999999998 888765532 22334444331 011 11 677778888888885
Q ss_pred chhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCC
Q 004739 391 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKAND 470 (732)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 470 (732)
.... ..+ . ..+..+++.+ +..+++++.|+.+++|+
T Consensus 365 ~~~~---~~~---------~---------------------~~v~~~~~~~------------~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 365 SSMH---QDH---------S---------------------NLIVSLDNSK------------AQEYSSISWDDTLKVNG 399 (615)
T ss_dssp TEEE---CCC---------C---------------------SCEEEEECCS------------TTCCEEEETTTEEEETT
T ss_pred hhhc---Ccc---------c---------------------CceEEEEECC------------CcEEEEEeCCCCEEEEE
Confidence 4000 000 0 0133445533 45677888888888887
Q ss_pred CCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccc-cCCcceeeccCC
Q 004739 471 GGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFL-HGSLNVRIHRRG 549 (732)
Q Consensus 471 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~-~~~~~~~~~~~~ 549 (732)
... + ... .....++++|++ ..++++ .++.+++|.. +++....+ .+.
T Consensus 400 ~~~------~------~~~-~~~~~~~~s~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 446 (615)
T 1pgu_A 400 ITK------H------EFG-SQPKVASANNDG------------------FTAVLT-NDDDLLILQSFTGDIIKSV-RLN 446 (615)
T ss_dssp EEE------E------ECS-SCEEEEEECSSS------------------EEEEEE-TTSEEEEEETTTCCEEEEE-ECS
T ss_pred ccc------C------ccc-CCceEEEEcCCC------------------CEEEEe-CCCceEEEeccCCceeeec-ccC
Confidence 211 0 000 011256677777 666666 6677888887 45555444 478
Q ss_pred CCccccccCCCCCCCCCCCC-CCCCCccccccccccc-eeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCc
Q 004739 550 DSARETVDANGSSGSPSSSS-QNDRIPYQPETVIDMK-QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 627 (732)
Q Consensus 550 ~~v~~~~~s~d~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~t 627 (732)
..+.+++|+ +++|++++. ++...+|+... .+.. ..+.+|...++++. |+|||++||+|+.||.|++||+.+
T Consensus 447 ~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~~v~~~~----~s~~g~~l~~~~~dg~i~iw~~~~ 519 (615)
T 1pgu_A 447 SPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAKPSYIS----ISPSETYIAAGDVMGKILLYDLQS 519 (615)
T ss_dssp SCEEEEEEC--SSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSCEEEEE----ECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCceEEEEc--CCEEEEeecCCCeEEEEECCC-ccccccccCCccCceEEEE----ECCCCCEEEEcCCCCeEEEeeCCC
Confidence 889999999 889999987 77777798877 3333 77789998866665 699999999999999999999999
Q ss_pred ccEEEEEec-CcccEEEEeecC----------CCCeEEEecCCCcEEEEcCCCC-CCccccCCCCCCCc-----hhHHHH
Q 004739 628 GRLIKMLLG-DEAVVNCVQCHP----------FDCVVATSGIDNTIKIWTPSAS-VPSIVSGGAAGPDT-----ADVLEA 690 (732)
Q Consensus 628 g~~~~~l~g-H~~~V~~v~fsp----------~~~~l~S~s~D~~i~vW~~~~~-~~~~~~~gh~~~~~-----~~~~~~ 690 (732)
++++..+.+ |...|++++|+| ++++||+++.|++|+||++.++ +++..+.||.+++. ++.. +
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 598 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-E
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-e
Confidence 999999999 999999999999 9999999999999999999998 78889999998874 4555 7
Q ss_pred HHHHHHHhhhccccc
Q 004739 691 MESNQRKLSRNREHS 705 (732)
Q Consensus 691 ~~~~~~~~~~~~~~~ 705 (732)
+....+...++|+..
T Consensus 599 ~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 599 VSSGADACIKRWNVV 613 (615)
T ss_dssp EEEETTSCEEEEEEC
T ss_pred EEecCCceEEEEeee
Confidence 777777788888764
No 9
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-44 Score=384.02 Aligned_cols=190 Identities=17% Similarity=0.297 Sum_probs=163.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.....+.+|.++|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++|+.|++|+
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIK 175 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence 345678999999999999999999999999999999999999999988 799999999999998 58999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+||+.+. .++..+.+|...|.+++|+|+ +++|++++.|+.|++||++++..
T Consensus 176 iwd~~~~----------~~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~------------------ 226 (410)
T 1vyh_C 176 LWDFQGF----------ECIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYC------------------ 226 (410)
T ss_dssp EEETTSS----------CEEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCE------------------
T ss_pred EEeCCCC----------ceeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcE------------------
Confidence 9999863 346788899999999999995 48999999999999999988752
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
+....+|...|.++.|+|+ +.+|++|+.|+.|++||+++.+....+ .+|..
T Consensus 227 -------~~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~~~~~~--------------------~~h~~- 277 (410)
T 1vyh_C 227 -------VKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKECKAEL--------------------REHRH- 277 (410)
T ss_dssp -------EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-
T ss_pred -------EEEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCceeeEe--------------------cCCCc-
Confidence 1122346668999999998 789999999999999999887544332 44554
Q ss_pred cEEEEEEcCCC
Q 004739 250 HLTHVTFSPNG 260 (732)
Q Consensus 250 ~i~~l~~sp~g 260 (732)
.|.+++|+|++
T Consensus 278 ~v~~~~~~~~~ 288 (410)
T 1vyh_C 278 VVECISWAPES 288 (410)
T ss_dssp CEEEEEECCSC
T ss_pred eEEEEEEcCcc
Confidence 59999999973
No 10
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-43 Score=364.63 Aligned_cols=213 Identities=23% Similarity=0.335 Sum_probs=183.7
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
++..++|++|.++|++++|+|++++|++|+.||+|+|||+.+++.+..+ ..|...|.+++|+|+ +++|++|+.|+.|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence 4566789999999999999999999999999999999999999999888 789999999999999 5999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
++|++.+..... .....+.+|...|.++.|++++ .+++++.|+.|++||+.+++.
T Consensus 122 ~iw~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~----------------- 176 (340)
T 1got_B 122 SIYNLKTREGNV------RVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ----------------- 176 (340)
T ss_dssp EEEETTTCSBSC------EEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE-----------------
T ss_pred EEEECccCCCcc------eeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE-----------------
Confidence 999998643221 2356778999999999999843 588999999999999987652
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
+....+|...|.+++|+|+ +.+|++|+.|+.|++||+++...+..+ .+|..
T Consensus 177 --------~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~--------------------~~h~~ 227 (340)
T 1got_B 177 --------TTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES 227 (340)
T ss_dssp --------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEE--------------------CCCSS
T ss_pred --------EEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEE--------------------cCCcC
Confidence 1223456778999999998 789999999999999999987544333 44555
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.|++++|+|++++|++++.||.|++||+++
T Consensus 228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 228 -DINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred -CEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 599999999999999999999999999987
No 11
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-45 Score=414.08 Aligned_cols=481 Identities=14% Similarity=0.092 Sum_probs=359.8
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
.+....+.+|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+ .+|...|.+++|+|++ ..++++++.
T Consensus 106 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~-~~~l~~~~~ 181 (615)
T 1pgu_A 106 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSR-PMRSMTVGD 181 (615)
T ss_dssp EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSS-SCEEEEEET
T ss_pred ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCC-CcEEEEEeC
Confidence 46677888999999999999999999999987 6888888 66777777 7999999999999994 238999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
|+.|++||+.+. .++..+.+|.. .|++++|+|+++++|++++.||.|++||+.+++..
T Consensus 182 d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------- 242 (615)
T 1pgu_A 182 DGSVVFYQGPPF----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--------- 242 (615)
T ss_dssp TTEEEEEETTTB----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE---------
T ss_pred CCcEEEEeCCCc----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe---------
Confidence 999999998863 33677888999 99999999963689999999999999999887621
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
..+. .....|...|.+++|+ + +.+|++++.|+.|++||+++.+.+..+...
T Consensus 243 -----~~~~-------~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------- 293 (615)
T 1pgu_A 243 -----KYIE-------DDQEPVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLD--------------- 293 (615)
T ss_dssp -----EECC-------BTTBCCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECC---------------
T ss_pred -----EEec-------ccccccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCC---------------
Confidence 0000 0001466789999999 6 889999999999999999987654433211
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccc
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRV 321 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 321 (732)
.......+.++.|. +++++++++.||.|++||+.+++....+ .+|...+.+++| |+ +
T Consensus 294 --~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~----------------~~~~~~v~~~~~-~~---l 350 (615)
T 1pgu_A 294 --KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI----------------SGHNKGITALTV-NP---L 350 (615)
T ss_dssp --TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE----------------CCCSSCEEEEET-TT---T
T ss_pred --CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE----------------eCCCCCEEEEEe-cC---c
Confidence 01112258888886 8899999999999999999874433222 344555666666 66 5
Q ss_pred ccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC----CCccchhhhhhHHHHhhccccccchhhhHH
Q 004739 322 RGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI----GPMLRHECLCIRAALLLKRKWKNDAQMAIR 397 (732)
Q Consensus 322 ~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 397 (732)
+ +++.|+.+++ |++. .+. .+|...+ -+++. .+++++.++.+++|+........
T Consensus 351 ~---~~~~dg~i~~-----w~~~---~~~----------~~~~~~v~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 351 I---SGSYDGRIME-----WSSS---SMH----------QDHSNLIVSLDNSKAQ--EYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp E---EEETTSCEEE-----TTTT---EEE----------CCCCSCEEEEECCSTT--CCEEEETTTEEEETTEEEEECSS
T ss_pred E---EECCCCeEEE-----EEch---hhc----------CcccCceEEEEECCCc--EEEEEeCCCCEEEEEcccCcccC
Confidence 5 8888888888 7654 110 1122222 11121 67788888999999865211100
Q ss_pred hHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 004739 398 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEP 477 (732)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~ 477 (732)
.....+++|+. ..++++ .++.+++|+.
T Consensus 408 -----------------------------------~~~~~~~s~~~-----------~~~~~~-~~~~~~~~~~------ 434 (615)
T 1pgu_A 408 -----------------------------------QPKVASANNDG-----------FTAVLT-NDDDLLILQS------ 434 (615)
T ss_dssp -----------------------------------CEEEEEECSSS-----------EEEEEE-TTSEEEEEET------
T ss_pred -----------------------------------CceEEEEcCCC-----------CEEEEe-CCCceEEEec------
Confidence 01234556652 222222 4556666652
Q ss_pred CCCcccccccccccccc--CCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCC-CcccccccccCCcc--eeeccCCCCc
Q 004739 478 RTGRVLSLSDIIYRSEA--NSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDE-GRDVEANFLHGSLN--VRIHRRGDSA 552 (732)
Q Consensus 478 ~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-d~~~~~~~~~~~~~--~~~~~~~~~v 552 (732)
.+++.+. .+ .+... .++++ + +.+++++. |+.+++|++..... ..+..|...|
T Consensus 435 ~~~~~~~--~~-~~~~~~~~~~~~--~------------------~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v 491 (615)
T 1pgu_A 435 FTGDIIK--SV-RLNSPGSAVSLS--Q------------------NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491 (615)
T ss_dssp TTCCEEE--EE-ECSSCEEEEEEC--S------------------SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred cCCceee--ec-ccCCCceEEEEc--C------------------CEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence 1222221 11 11111 34444 4 78888998 99999999965443 6778899999
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccccccccceeEee-eccccceeeecccccC----------CCCEEEEecCCCcEE
Q 004739 553 RETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVG-HCNVGTDIKQASFLGQ----------RGDYIASGSDDGRWF 621 (732)
Q Consensus 553 ~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~~~~i~~~~f~s~----------dg~~lasgs~Dg~i~ 621 (732)
.+++|+||+++|++++.++...+|+... .+.+..+.+ |...++++. |+| ++++||+|+.||+|+
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~v~~~~----~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSKINAIS----WKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSCEEEEE----ECCCC------CCSCCEEEEEETTSCEE
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCceeEEE----EcCccccccccccCCCEEEEEcCCCcEE
Confidence 9999999999999998888888899877 678888888 998876665 699 999999999999999
Q ss_pred EEEcCcc-cEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004739 622 IWEKQTG-RLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 622 iWd~~tg-~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~ 669 (732)
|||+.++ +++..+.+|.+.|++|+|+|+++ |+|+|.|++|++|++.+
T Consensus 567 iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 567 IYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999998 89999999999999999999999 99999999999999875
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-43 Score=355.84 Aligned_cols=214 Identities=14% Similarity=0.264 Sum_probs=183.1
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+++..++|++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+ ..|..+|.+++|+|+ +++|++|+.|++
T Consensus 2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~ 78 (304)
T 2ynn_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (304)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence 46778899999999999999999999999999999999999999999988 789999999999999 599999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|++||+.++ .++..+.+|...|++++|+|++ .+|++|+.|++|++||++++..+
T Consensus 79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~--------------- 132 (304)
T 2ynn_A 79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL--------------- 132 (304)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred EEEEECCCC----------cEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---------------
Confidence 999999864 3367889999999999999955 89999999999999999875311
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.....+|...|.+++|+|.++.+|++|+.|++|++||+++..+...+. .++.
T Consensus 133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~~~~ 184 (304)
T 2ynn_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------TGQE 184 (304)
T ss_dssp ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------CCCT
T ss_pred ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------cCCc
Confidence 112235677899999999658899999999999999998765432221 2222
Q ss_pred cccEEEEEEcC--CCCEEEEEecCCeEEEEECCC
Q 004739 248 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 248 ~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~~ 279 (732)
. .+..+.|+| ++++|++++.|+.|++||+++
T Consensus 185 ~-~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~ 217 (304)
T 2ynn_A 185 R-GVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (304)
T ss_dssp T-CEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred C-cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence 2 588899987 778999999999999999876
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-43 Score=361.12 Aligned_cols=209 Identities=18% Similarity=0.285 Sum_probs=174.1
Q ss_pred cccEeeeccCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 10 SQERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
...+.+++|.+.|++++|+|+ +.+|+||+.|++|+|||+.+++. ...+ .+|...|.+++|+|+ +.++++++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s 99 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSS 99 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEE
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEe
Confidence 344667899999999999984 67999999999999999987754 3345 799999999999999 48999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.|++|++||+.++ .++..+..|...+.+++|+|++ ++|++++.||.|++||+++++..
T Consensus 100 ~D~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----------- 157 (321)
T 3ow8_A 100 LDAHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----------- 157 (321)
T ss_dssp TTSEEEEEETTTT----------EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE-----------
T ss_pred CCCcEEEEECCCC----------CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee-----------
Confidence 9999999999864 2367778888999999999955 89999999999999999877521
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.....+...|.+++|+|+ +++|++|+.|+.|++||+++++.+..+
T Consensus 158 --------------~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~~~~~~~-------------------- 202 (321)
T 3ow8_A 158 --------------YSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTL-------------------- 202 (321)
T ss_dssp --------------EEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------
T ss_pred --------------EEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------------------
Confidence 111123447899999999 889999999999999999987654433
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. +|++++|+|++++|++++.|+.|++||+++
T Consensus 203 ~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 203 EGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp CCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred cccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 44554 599999999999999999999999999876
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-43 Score=371.78 Aligned_cols=226 Identities=24% Similarity=0.376 Sum_probs=187.7
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.+...++|+||.+.|++++|+|++++|+||+.|++|+|||+.+++.+..+ ..|...|.+++|+|+ |++|++|+.|+.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~~ 131 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDSA 131 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSSC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCc
Confidence 34566889999999999999999999999999999999999999999988 799999999999999 599999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|++||+...... .........+.+|...|.++.|.|+++..|++|+.|++|++||+++++.. ..+
T Consensus 132 v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~------------~~~ 196 (380)
T 3iz6_a 132 CSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI------------SIF 196 (380)
T ss_dssp CEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE------------EEE
T ss_pred EEEEECCCCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE------------EEe
Confidence 999999753211 11123356788999999999999987788999999999999999887622 000
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
......+|...|.+++|++.++++|++|+.|++|++||++.. +.+..+ .+|
T Consensus 197 --------~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--------------------~~h 248 (380)
T 3iz6_a 197 --------GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--------------------HGH 248 (380)
T ss_dssp --------CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--------------------CCC
T ss_pred --------ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--------------------CCc
Confidence 011234577799999998855889999999999999999843 222222 556
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.. .|++++|+|++++|++++.||+|++||+.++
T Consensus 249 ~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 249 EG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp SS-CCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 65 5999999999999999999999999999884
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.1e-42 Score=357.98 Aligned_cols=217 Identities=19% Similarity=0.287 Sum_probs=183.6
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
++..++|++|.+.|++++|+|++++||||+.|++|+|||..+++....+ ..|...|.+++|+|+ |.+|++++.|+.+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i 130 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC 130 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence 3467889999999999999999999999999999999999999988888 689999999999999 5999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
++|++....... .......+.+|...|.+++|+|++ ..|++++.|++|++||+++++.
T Consensus 131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~----------------- 188 (354)
T 2pbi_B 131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQL----------------- 188 (354)
T ss_dssp EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred EEEEEecccccc----ccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeE-----------------
Confidence 999987532111 113356777899999999999954 8899999999999999988762
Q ss_pred ccCCccccccCCCCCccceEEEEecCC-CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
+....+|...|.+++|+|+ ++++|++|+.||.|++||+++++.+..+ .+|.
T Consensus 189 --------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------~~h~ 240 (354)
T 2pbi_B 189 --------LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------ETHE 240 (354)
T ss_dssp --------EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCS
T ss_pred --------EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCC
Confidence 1122356678999999885 2679999999999999999987644333 4455
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
. .|++++|+|++++|++++.|++|++||++.
T Consensus 241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp S-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 5 599999999999999999999999999987
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=359.09 Aligned_cols=220 Identities=17% Similarity=0.246 Sum_probs=181.0
Q ss_pred hhccccEeeeccCC-ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 7 RRLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 7 ~~~~~~~~l~~h~~-~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
..+++++++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++... ..+..+|...|.+++|+|+ |++|++|+
T Consensus 3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s 80 (345)
T 3fm0_A 3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASAS 80 (345)
T ss_dssp -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEE
T ss_pred ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEE
Confidence 35678889999998 9999999999999999999999999999887643 3344689999999999999 59999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.|++|++|++..... .++..+.+|...|.+++|+|+ +++|++++.|+.|++||+......
T Consensus 81 ~D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~~~----------- 140 (345)
T 3fm0_A 81 FDATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEY----------- 140 (345)
T ss_dssp TTSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTSCE-----------
T ss_pred CCCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCCCe-----------
Confidence 999999999986432 236788999999999999995 489999999999999999875421
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
..+.....|...|.+++|+|+ +.+|++|+.|+.|++||++..+.. |...+
T Consensus 141 -----------~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~------- 190 (345)
T 3fm0_A 141 -----------ECVSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWV-----------CCATL------- 190 (345)
T ss_dssp -----------EEEEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-----------EEEEE-------
T ss_pred -----------EEEEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-----------EEEEe-------
Confidence 011223356678999999999 789999999999999998765311 11111
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|++++|+|+|++|++++.|++|+||+...
T Consensus 191 ~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 191 EGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred cCCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 45655 699999999999999999999999999754
No 17
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-43 Score=411.53 Aligned_cols=551 Identities=10% Similarity=0.000 Sum_probs=330.9
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.|..+|++++|+| |++|++++.|++|+|||+.+++++..+ . |...|++++|+|+ +++|++|+.||+|++||+++.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~-~-~~~~V~~v~~sp~--g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV-F-VPGKITSIDTDAS--LDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE-E-CSSCEEEEECCTT--CSEEEEEETTSCEEEEETTTT
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE-c-CCCCEEEEEECCC--CCEEEEEcCCCcEEEEECCCC
Confidence 4889999999999 889999999999999999999999888 3 7789999999999 599999999999999999864
Q ss_pred CCCCCCCCCCCCc-eeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 97 SGRGLDDNAITPS-ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
............. ..+.+|...|++++|+|++...+++|+.||.| +||+++++..... ..+... . ..+...
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~-----g-~~~~~~ 202 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPP-----F-APGGDF 202 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCT-----T-CCCSTT
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCC-----c-CCCccc
Confidence 3110000000000 23467999999999999766889999999999 9999886522000 000000 0 000000
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc--cccC-CCCCCccccccccccccCCCccccEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--CQKR-MSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
.......|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+.. +... ...+. ...+ .....+.. +|+
T Consensus 203 ~~~~~~~h~~~V~~v~fspd-g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~---~~~~--~~~~~~~~-~V~ 275 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPN-SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ---PDYI--RDSSTNAA-KIS 275 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTT-SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC---TTCC--CCCSSCCC-EEE
T ss_pred ccccccccCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC---CcCC--CCCccccC-Cee
Confidence 00112234568999999999 88999999999999999998765432 1000 00000 0000 00001122 588
Q ss_pred EEEEc----CCC-CEEEEEecC-----CeEEEEECCC------------------CCCcceee-ecCCCCceeeeccC--
Q 004739 253 HVTFS----PNG-EEVLLSYSG-----EHVYLMDVNH------------------AGGRAMRY-TVGDASKIMSFTPT-- 301 (732)
Q Consensus 253 ~l~~s----p~g-~~l~~~~~d-----g~v~iwd~~~------------------~~~~~~~~-~~~~~~~~~~~~~~-- 301 (732)
+++|+ |++ .+|++|+.+ ..+.+|++.. ++....+. .+...+..+.+.+.
T Consensus 276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s 355 (902)
T 2oaj_A 276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS 355 (902)
T ss_dssp EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence 88885 443 455666554 2677777421 01010000 01111111111110
Q ss_pred --CCCc-----------cCCCCCCccCCCcccccc-------------cc--ccCcchhhHHHHHHHhhhhcCCCchhhh
Q 004739 302 --LNGL-----------ELQPPIHDFLQTNIRVRG-------------EV--ATGLGKCRMLVEIARNSLEEGKHPYYGI 353 (732)
Q Consensus 302 --~~~~-----------~~~~~~~~~~~~g~~~~~-------------~~--~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 353 (732)
+.+. ...+....+ ++|..... .+ .+..+....+|....-.-..+...
T Consensus 356 p~~~g~~d~~~l~~~s~dg~l~~~~~-~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~---- 430 (902)
T 2oaj_A 356 PYFAGCHNPGLILLILGNGEIETMLY-PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYL---- 430 (902)
T ss_dssp SHHHHTBSCSEEEEEETTSCEEEEET-TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCS----
T ss_pred CCcCCCCCceeEEEEcCCCcEEEEEC-CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCc----
Confidence 0000 000000000 01100000 00 000011122222221000011110
Q ss_pred hHhHHHHhcccC-----CCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHH
Q 004739 354 EACNEVLEGHLS-----GIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 428 (732)
Q Consensus 354 ~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (732)
+.||.. .++|+++ ++++++.|+++|+|+.....
T Consensus 431 ------l~G~~~~v~sv~~spdg~--~laSgs~DgtVrlWd~~~g~---------------------------------- 468 (902)
T 2oaj_A 431 ------LKGGVRTKRQKLPAEYGT--AFITGHSNGSVRIYDASHGD---------------------------------- 468 (902)
T ss_dssp ------CCCSBCCCCCCCCCSEEE--EEEEEETTSEEEEEESSCCT----------------------------------
T ss_pred ------ccCCcCCCCcccccccCc--EEEEecCCCcEEEEECCCcc----------------------------------
Confidence 112211 1245544 55566666666666533100
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccc----cccccccc--CCCCCCCC
Q 004739 429 ALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLS----DIIYRSEA--NSDASQDG 502 (732)
Q Consensus 429 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~--~~~~s~d~ 502 (732)
..+...+.+. ....|... +++|+|||
T Consensus 469 ------------------------------------------------~~~~~~~~~~l~~~~~~~h~~~V~svafspdg 500 (902)
T 2oaj_A 469 ------------------------------------------------IQDNASFEVNLSRTLNKAKELAVDKISFAAET 500 (902)
T ss_dssp ------------------------------------------------TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT
T ss_pred ------------------------------------------------ccCCceEEeechhhcCCCCCCceeEEEecCCC
Confidence 0000000000 00022222 68899999
Q ss_pred CCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCC------------------------------------------
Q 004739 503 PRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS------------------------------------------ 540 (732)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~------------------------------------------ 540 (732)
+++|+|+.|+++++|++.+.
T Consensus 501 ------------------~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 501 ------------------LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp ------------------TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred ------------------CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 99999999999999998543
Q ss_pred ----cceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccc-----eeEe-eeccccceeeeccccc-----
Q 004739 541 ----LNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMK-----QRYV-GHCNVGTDIKQASFLG----- 605 (732)
Q Consensus 541 ----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-gh~~~~~~i~~~~f~s----- 605 (732)
....+.+|...|++++||||| +||+++.++..++|+..+. ..+ +.+. ||...+++|. ||
T Consensus 563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~-~~~~~~~~~~~~~gh~~~V~sv~----Fs~~~~~ 636 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP-AIIYMENIREISGAQSACVTCIE----FVIMEYG 636 (902)
T ss_dssp EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT-EEEEEEEGGGTCSSCCCCEEEEE----EEEEECT
T ss_pred CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC-eEEEEeehhHhccccccceEEEE----EEEEecC
Confidence 145678899999999999999 9999988888888997663 222 3454 8999977666 69
Q ss_pred CCC---CEEEEecCCCcEEEEEc---CcccEEEEEecCc-----ccEEEEe-ec----------------------CCCC
Q 004739 606 QRG---DYIASGSDDGRWFIWEK---QTGRLIKMLLGDE-----AVVNCVQ-CH----------------------PFDC 651 (732)
Q Consensus 606 ~dg---~~lasgs~Dg~i~iWd~---~tg~~~~~l~gH~-----~~V~~v~-fs----------------------p~~~ 651 (732)
||| ++||+|+.|++|++||+ .+|+++.+|.+|. +.|.+++ |+ +++.
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 716 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI 716 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence 885 89999999999999999 8999999999985 6788887 76 5555
Q ss_pred eEEEecCCCcEEEEcCCCCCCccccCCCCCCC--------------chhHHHHHHHHHHHhhhccccccch
Q 004739 652 VVATSGIDNTIKIWTPSASVPSIVSGGAAGPD--------------TADVLEAMESNQRKLSRNREHSLSY 708 (732)
Q Consensus 652 ~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (732)
+||++ |..||||++.++++.....+|.-.+ ..+...++...++...++|+.+.-.
T Consensus 717 ~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~ 785 (902)
T 2oaj_A 717 VLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFK 785 (902)
T ss_dssp EEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCC
T ss_pred EEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchH
Confidence 66655 7889999999999887666654211 1223455556677778888876433
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-42 Score=359.86 Aligned_cols=213 Identities=18% Similarity=0.188 Sum_probs=160.2
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeeEEEE---ccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~------dg~i~vWd~~~~~~~~~~---~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
....+|...|++++|+|||++||+|+. |+.|++|+..++.....+ ..+|...|++++|+|+ ..+++++
T Consensus 36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d---~~~l~~s 112 (357)
T 4g56_B 36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE---KGILVAS 112 (357)
T ss_dssp ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT---TEEEEEE
T ss_pred CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC---CCEEEEE
Confidence 345679999999999999999999997 778999998776533221 1368899999999998 4677788
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.||+|+|||+.+++... .......+|...|++++|+|++ ++|++++.|+.|++||+++++.
T Consensus 113 ~dg~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~------------ 173 (357)
T 4g56_B 113 DSGAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV------------ 173 (357)
T ss_dssp TTSCEEEC--------C------CCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE------------
T ss_pred CCCEEEEeeccccceeE------EEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------------
Confidence 99999999998754322 1123455899999999999954 8999999999999999988652
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
+.....|...|++++|+|++..++++++.|+.|++||+++.+++..+..
T Consensus 174 -------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------ 222 (357)
T 4g56_B 174 -------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------ 222 (357)
T ss_dssp -------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------
T ss_pred -------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------
Confidence 2223456778999999998667899999999999999998765443210
Q ss_pred CCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+. ..+++++|+|+ +.+|++|+.|+.|++||+++
T Consensus 223 ~~~~-~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~ 258 (357)
T 4g56_B 223 CASD-TIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258 (357)
T ss_dssp TTCC-SCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred cccc-ccccchhhhhcccceEEEeecccceeEEECCC
Confidence 1222 25999999997 46888999999999999876
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.8e-41 Score=345.86 Aligned_cols=212 Identities=21% Similarity=0.337 Sum_probs=183.3
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
.+.+..++.+|.++|++++|+|++++|++|+.|+.|+||++.+++....+ .+|...|.+++|+|+ +++|++|+.|+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~ 88 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT 88 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence 34567789999999999999999999999999999999999999998888 799999999999999 599999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|++||+++. .++..+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.
T Consensus 89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~---------------- 141 (312)
T 4ery_A 89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKC---------------- 141 (312)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTCCE----------------
T ss_pred EEEEECCCC----------cEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCEE----------------
Confidence 999999864 336788899999999999995 48999999999999999987652
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
+.....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+ ..+.
T Consensus 142 ---------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~--------------------~~~~ 191 (312)
T 4ery_A 142 ---------LKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTL--------------------IDDD 191 (312)
T ss_dssp ---------EEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------------------CCSS
T ss_pred ---------EEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeEE--------------------eccC
Confidence 1122345668999999998 789999999999999999987544332 1122
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..++..++|+|++++|++++.||.|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 23599999999999999999999999999887
No 20
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=356.05 Aligned_cols=208 Identities=18% Similarity=0.171 Sum_probs=161.6
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC------------CeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~------------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
...|...|.+++|+|||++|++++ |+++++||... +..... ..|...|.+++|+|+ ..|++|
T Consensus 26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d---~~l~~~ 99 (344)
T 4gqb_B 26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGE---RGILVA 99 (344)
T ss_dssp CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETT---TEEEEE
T ss_pred cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCC---CeEEEE
Confidence 346788899999999999999887 67888887321 111111 246678999999998 589999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
+.||+|+|||+.+++... .....+.+|...|++++|+|++ ++|++|+.|++|++||+++++.
T Consensus 100 s~dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~----------- 161 (344)
T 4gqb_B 100 SDSGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV----------- 161 (344)
T ss_dssp ETTSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-----------
T ss_pred ECCCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE-----------
Confidence 999999999998753211 1123455899999999999954 8999999999999999988752
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
+....+|...|.+++|+|++..+|++|+.|++|++||+++.+....+..
T Consensus 162 --------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----------------- 210 (344)
T 4gqb_B 162 --------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----------------- 210 (344)
T ss_dssp --------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------
T ss_pred --------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-----------------
Confidence 2233467789999999999667899999999999999998865544311
Q ss_pred cCCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Q 004739 243 EHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+ ...+++++|+|+ +++|++|+.||.|++||+++
T Consensus 211 -~~~-~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 211 -SAP-GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp -----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred -cee-eccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 112 225899999995 57889999999999999876
No 21
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.5e-43 Score=410.92 Aligned_cols=478 Identities=13% Similarity=0.103 Sum_probs=345.0
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+++..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++++.||.
T Consensus 2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~ 78 (814)
T 3mkq_A 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR 78 (814)
T ss_dssp CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCe
Confidence 46778899999999999999999999999999999999999999999999 799999999999999 589999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|++||+.++ ..+..+.+|...|++++|+|++ .+|++++.||.|++||+.++...
T Consensus 79 i~vw~~~~~----------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~--------------- 132 (814)
T 3mkq_A 79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL--------------- 132 (814)
T ss_dssp EEEEETTTC----------CEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEE---------------
T ss_pred EEEEECCCC----------cEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceE---------------
Confidence 999999864 2367888999999999999955 88999999999999999775311
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
......|...|.+++|+|+++..|++++.||.|++||+.+......+ ..+.
T Consensus 133 ---------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------------~~~~ 183 (814)
T 3mkq_A 133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------TTGQ 183 (814)
T ss_dssp ---------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--------------------ECCC
T ss_pred ---------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--------------------ecCC
Confidence 11122456689999999943789999999999999999876544333 2222
Q ss_pred cccEEEEEEcC--CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcccccccc
Q 004739 248 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEV 325 (732)
Q Consensus 248 ~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 325 (732)
...+..++|+| ++++|++++.||.|++||+.+++.... +.++...+.+++|+|+|..++
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----------------~~~~~~~v~~~~~~~~~~~l~--- 244 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT----------------LEGHMSNVSFAVFHPTLPIII--- 244 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE----------------EECCSSCEEEEEECSSSSEEE---
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE----------------EcCCCCCEEEEEEcCCCCEEE---
Confidence 23589999999 999999999999999999988543222 234455677788899999999
Q ss_pred ccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC-----CCccchhhhhhHHHHhhccccccchhhhHHhHH
Q 004739 326 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI-----GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCY 400 (732)
Q Consensus 326 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 400 (732)
+++.|+.+++ |++.++... ..+..+...+ +|++...+++++. +..+..|+....
T Consensus 245 ~~~~dg~v~v-----wd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------- 303 (814)
T 3mkq_A 245 SGSEDGTLKI-----WNSSTYKVE--------KTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGND------- 303 (814)
T ss_dssp EEETTSCEEE-----EETTTCSEE--------EEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCC-------
T ss_pred EEeCCCeEEE-----EECCCCcEE--------EEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCC-------
Confidence 9999999999 988876632 1122222222 5555422233332 333444442200
Q ss_pred HHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCC-CCC--CCCCCCC
Q 004739 401 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNK-AND--GGARSEP 477 (732)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~-~~~--~~~~~~~ 477 (732)
.....++|++ ..+++++.+.... ++. ....+..
T Consensus 304 ---------------------------------~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 304 ---------------------------------EPTLSLDPVG-----------KLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp ---------------------------------SCCEEECSSS-----------EEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred ---------------------------------CceeEECCCC-----------CEEEECcccccceeeeeeeccccccc
Confidence 0112344442 2222221111100 000 0000111
Q ss_pred CCCccccccc--cccccc--cCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCcc
Q 004739 478 RTGRVLSLSD--IIYRSE--ANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSAR 553 (732)
Q Consensus 478 ~~g~~~~~~~--~~~~~~--~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 553 (732)
..+....... ...+.. ..++|+|+| +.+++++ ++.+.+|++..... .+...+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg------------------~~la~~~-~~~~~i~~~~~~~~----~~~~~i~ 396 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNG------------------RFVTVVG-DGEYVIYTALAWRN----KAFGKCQ 396 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTS------------------SEEEEEE-TTEEEEEETTTTEE----EEEEECS
T ss_pred ccCccceeeeecCCCCccCCceeEECCCC------------------CEEEEec-CCEEEEEECccccc----cCCCceE
Confidence 2222221111 111111 168889999 7888877 78889998643222 2345688
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC---CEEEEecCCCcEEEEEcCcccE
Q 004739 554 ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG---DYIASGSDDGRWFIWEKQTGRL 630 (732)
Q Consensus 554 ~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg---~~lasgs~Dg~i~iWd~~tg~~ 630 (732)
+++|+||++++|+++.++...+| +.+.+|...+.++. |+||| .+|++++.|++|++||+.++++
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~---------~~~~~~~~~v~~~~----~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYY---------KNFKEVTSWSVPMH----SAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEE---------ETTEECTTCCCCCS----SCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEE---------ECCCCccceEEcCC----cCccceecceEEEEecCCEEEEEECCcCcE
Confidence 99999999999999766665667 34567877755555 69999 6999999999999999999999
Q ss_pred EEEEecCcccEEEEeecCCCCeEEEe------cCCCcEEEEc
Q 004739 631 IKMLLGDEAVVNCVQCHPFDCVVATS------GIDNTIKIWT 666 (732)
Q Consensus 631 ~~~l~gH~~~V~~v~fsp~~~~l~S~------s~D~~i~vW~ 666 (732)
+..+.+|.. .++|+|+|++|+++ +.|..+.+|-
T Consensus 464 ~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 464 VRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999986 99999999999999 7777666764
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-40 Score=348.77 Aligned_cols=208 Identities=20% Similarity=0.320 Sum_probs=167.6
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC------------------cCeEEEEEecCCCCCE
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL 78 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~------------------~~V~~~~~s~~~~g~~ 78 (732)
+|...|++++|+|||++||+|+ +++++||++.+++.+..+ ..|. ..|.+++|+|+ |++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence 6999999999999999999986 689999999999988877 4443 24999999999 599
Q ss_pred EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004739 79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 158 (732)
Q Consensus 79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 158 (732)
|++|+.|++|++||+.+. ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++..
T Consensus 138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~------ 200 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCS------ 200 (393)
T ss_dssp EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE------
T ss_pred EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeE------
Confidence 999999999999999863 2367889999999999999955 89999999999999999876521
Q ss_pred CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004739 159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 238 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (732)
..+ .+...+.+++|+|.++.+|++|+.|+.|++||+++++.+..+...
T Consensus 201 --------~~~------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~------------ 248 (393)
T 1erj_A 201 --------LTL------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE------------ 248 (393)
T ss_dssp --------EEE------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred --------EEE------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc------------
Confidence 000 122368999999955899999999999999999987654333110
Q ss_pred cccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 239 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.....+|.. .|++++|+|+|++|++++.|+.|++||+.+
T Consensus 249 -~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 249 -NESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred -ccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 001134554 699999999999999999999999999987
No 23
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.4e-40 Score=336.93 Aligned_cols=212 Identities=18% Similarity=0.288 Sum_probs=177.9
Q ss_pred hhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCC-----CeeEEEEccCCCcCeEEEEEecCCCCCEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVV 80 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~-----~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~ 80 (732)
+.+.+..+|+||.++|++++|+|++ ++|++|+.|++|++||+.. +..+..+ .+|...|.+++|+|+ |.+|+
T Consensus 5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~ 81 (319)
T 3frx_A 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYAL 81 (319)
T ss_dssp EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEE
T ss_pred eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEE
Confidence 3456778999999999999999965 8999999999999999864 3345666 799999999999999 59999
Q ss_pred EEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 81 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 81 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
+|+.|++|++||+.++ +++..+.+|...|.+++|+|+ +.+|++++.|+.|++||++...
T Consensus 82 s~s~D~~v~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~vwd~~~~~---------- 140 (319)
T 3frx_A 82 SASWDKTLRLWDVATG----------ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIKVWTIKGQC---------- 140 (319)
T ss_dssp EEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEEEEETTSCE----------
T ss_pred EEeCCCEEEEEECCCC----------CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe----------
Confidence 9999999999999864 336788999999999999995 4899999999999999986432
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCC-----CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-----RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 235 (732)
+....+|...|.++.|.|. ++..|++++.|+.|++||+++.+....+
T Consensus 141 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------ 192 (319)
T 3frx_A 141 ----------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF------------ 192 (319)
T ss_dssp ----------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE------------
T ss_pred ----------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee------------
Confidence 1122356678999999985 2458999999999999999876433222
Q ss_pred ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|++++|+|+|++|++++.||.|++||+.+
T Consensus 193 --------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 193 --------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp --------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred --------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 45655 699999999999999999999999999877
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-40 Score=337.66 Aligned_cols=224 Identities=14% Similarity=0.166 Sum_probs=171.8
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccC-CCcCeEEEEEecCCCCCEEEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~-h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
++++++++|++|.++|++++|+|+ +||+|+.|++|+|||+.++ +.+..+..+ |...|.+++|+|+ +++|++|+
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s 77 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS 77 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence 567788999999999999999987 9999999999999999875 445555234 9999999999999 58999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.|++|++||+....... ....++..+.+|...|.+++|+|+ +++|++|+.|++|++||++.....
T Consensus 78 ~D~~v~iw~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iwd~~~~~~~----------- 142 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT---FEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEE----------- 142 (330)
T ss_dssp TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEEECCTTCCC-----------
T ss_pred CCCcEEEEEcccCcCcc---ccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEeccCCCCC-----------
Confidence 99999999996421100 011346778899999999999995 589999999999999999543210
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
...+....+|...|.+++|+|+ +.+|++|+.|++|++||+.+... .|+..+
T Consensus 143 ----------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~~------- 193 (330)
T 2hes_X 143 ----------YECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-----------ECVAVL------- 193 (330)
T ss_dssp ----------CEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-----------EEEEEE-------
T ss_pred ----------eEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-----------eEEEEc-------
Confidence 0011223457778999999998 78999999999999999875410 111222
Q ss_pred CCCccccEEEEEEcCC--CCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~--g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|.+++|+|+ +.+|++++.|++|++||+..
T Consensus 194 ~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 194 NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 55665 6999999998 77899999999999999876
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-39 Score=338.58 Aligned_cols=214 Identities=20% Similarity=0.286 Sum_probs=175.5
Q ss_pred hhccccEeeeccCCceeEEEE-----cC-CCCEEEEEeCCCcEEEEeCCCC-------eeEEEEccCCCcCeEEEEEecC
Q 004739 7 RRLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPE 73 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~-----s~-dg~~lasg~~dg~i~vWd~~~~-------~~~~~~~~~h~~~V~~~~~s~~ 73 (732)
..+++..+|+||.+.|++++| ++ ++++||||+.|++|+|||+.+. .....+ .+|...|.+++|+|+
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC
Confidence 455678899999999999999 76 9999999999999999998753 345556 799999999999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004739 74 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 153 (732)
Q Consensus 74 ~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~ 153 (732)
+.++++|+.|++|++||++++ .++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.....
T Consensus 88 --~~~l~s~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-- 152 (343)
T 2xzm_R 88 --NCFAISSSWDKTLRLWDLRTG----------TTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-- 152 (343)
T ss_dssp --TTEEEEEETTSEEEEEETTSS----------CEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE--
T ss_pred --CCEEEEEcCCCcEEEEECCCC----------cEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce--
Confidence 589999999999999999864 2367889999999999999955 8999999999999999863220
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC---------CCEEEEEeCCCeEEEEECCCCCCCcccc
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQ 224 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------~~~l~tg~~dg~v~iwd~~~~~~~~~~~ 224 (732)
........|...|.+++|+|++ +.+|++++.|+.|++||... +....
T Consensus 153 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~-- 208 (343)
T 2xzm_R 153 ---------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYT-- 208 (343)
T ss_dssp ---------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEEE--
T ss_pred ---------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeEE--
Confidence 0112223566789999999983 26899999999999999432 11111
Q ss_pred cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+ .+|.. .|++++|+|+|++|++++.||.|++||+..
T Consensus 209 -----------~-------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 209 -----------F-------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp -----------E-------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred -----------E-------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 1 34554 599999999999999999999999999855
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=348.94 Aligned_cols=339 Identities=10% Similarity=0.092 Sum_probs=259.3
Q ss_pred ccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeC----CCCe------eEEEEcc---------CCCcCeEEEEEecCCCC
Q 004739 17 GHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIET---------GHSANVFCTKFVPETSD 76 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~----~~~~------~~~~~~~---------~h~~~V~~~~~s~~~~g 76 (732)
.|.++|++++|+|+++ +||+|+.|+.|+|||+ .+++ ....+.. +|...|++++|+|+ +
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~ 120 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD--G 120 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT--S
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC--C
Confidence 4669999999999999 9999999999999999 8887 4544421 16889999999998 5
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 156 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 156 (732)
++|++++.||.|++||.. + ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++...
T Consensus 121 ~~l~~~~~dg~i~i~~~~---~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~--- 185 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNKT---G--------ALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQ--- 185 (425)
T ss_dssp SEEEEEETTSCEEEEETT---S--------CEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEE---
T ss_pred CEEEEEeCCCeEEEEeCC---C--------CeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEE---
Confidence 999999999999999943 2 3367888999999999999954 899999999999999998765321
Q ss_pred CCCcccceEEeeccCCcc--ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004739 157 SSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
.+....... ............+.++.|+|+ ..+++++.|+.|++||+++.+.+..+
T Consensus 186 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~----------- 243 (425)
T 1r5m_A 186 ---------HFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL----------- 243 (425)
T ss_dssp ---------EECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE-----------
T ss_pred ---------EeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee-----------
Confidence 000000000 000000111223788899986 37999999999999999987654433
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCcc
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF 314 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (732)
.+|.. .|++++|+|++++|++++.||.|++||+.+++...
T Consensus 244 ---------~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------ 283 (425)
T 1r5m_A 244 ---------IGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN------------------------------ 283 (425)
T ss_dssp ---------CCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE------------------------------
T ss_pred ---------ccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce------------------------------
Confidence 33444 59999999999999999999999999988732111
Q ss_pred CCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhh
Q 004739 315 LQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQM 394 (732)
Q Consensus 315 ~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~ 394 (732)
T Consensus 284 -------------------------------------------------------------------------------- 283 (425)
T 1r5m_A 284 -------------------------------------------------------------------------------- 283 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 004739 395 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGAR 474 (732)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 474 (732)
T Consensus 284 -------------------------------------------------------------------------------- 283 (425)
T 1r5m_A 284 -------------------------------------------------------------------------------- 283 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccc
Q 004739 475 SEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARE 554 (732)
Q Consensus 475 ~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 554 (732)
.+..|...|.+
T Consensus 284 ---------------------------------------------------------------------~~~~~~~~i~~ 294 (425)
T 1r5m_A 284 ---------------------------------------------------------------------CFYGHSQSIVS 294 (425)
T ss_dssp ---------------------------------------------------------------------EECCCSSCEEE
T ss_pred ---------------------------------------------------------------------EecCCCccEEE
Confidence 01112334556
Q ss_pred cccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCccc-----
Q 004739 555 TVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGR----- 629 (732)
Q Consensus 555 ~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~----- 629 (732)
++|+|++ ++++++.++...+|+... .+.+..+.+|...+.++. |+|++++||+|+.||.|++||+.+++
T Consensus 295 ~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~----~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 368 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPIFAGR----ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368 (425)
T ss_dssp EEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCEEEEE----ECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred EEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccEEEEE----EcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence 6677777 666665555556677665 678888999988866665 69999999999999999999999999
Q ss_pred ---------------EEEEEecCcc--cEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004739 630 ---------------LIKMLLGDEA--VVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 630 ---------------~~~~l~gH~~--~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~ 669 (732)
++..+.+|.. .|++++|+|++++|++++.||+|++|+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 369 LYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred eecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 9999999977 999999999999999999999999999863
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-41 Score=357.76 Aligned_cols=349 Identities=15% Similarity=0.186 Sum_probs=274.0
Q ss_pred cCCceeEEEEcCCCC-EEEEE----------eCCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 18 HQGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 18 h~~~V~~l~~s~dg~-~lasg----------~~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
+...|.+++|+|+++ +|++| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|+ +.+|++++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~--~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHN--NKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSS--SSCEEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCC--CCeEEEEc
Confidence 346799999999987 99999 899999999999876 33333 68899999999999 58999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.||.|++||+...... ..++..+.+|...|++++|+|+++++|++++.|+.|++||+.+.+......
T Consensus 87 ~dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------- 153 (416)
T 2pm9_A 87 DNGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------- 153 (416)
T ss_dssp SSSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------
T ss_pred cCCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------
Confidence 9999999999862211 124678889999999999999757999999999999999998875210000
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
....+.....|...|.+++|+|+++.+|++++.|+.|++||+++.+.+..+... ...
T Consensus 154 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------------~~~ 210 (416)
T 2pm9_A 154 ---------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT--------------SPN 210 (416)
T ss_dssp ---------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC--------------CCS
T ss_pred ---------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc--------------ccc
Confidence 000111234566789999999987789999999999999999987654433110 000
Q ss_pred CCCccccEEEEEEcCCC-CEEEEEecCC---eEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCcc
Q 004739 244 HGRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNI 319 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g-~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 319 (732)
.+|.. .|++++|+|++ .+|++++.|+ .|++||++++....
T Consensus 211 ~~~~~-~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~----------------------------------- 254 (416)
T 2pm9_A 211 SGIKQ-QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL----------------------------------- 254 (416)
T ss_dssp SCCCC-CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-----------------------------------
T ss_pred cccCC-ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-----------------------------------
Confidence 12233 69999999997 6899999998 99999998732100
Q ss_pred ccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhH
Q 004739 320 RVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDC 399 (732)
Q Consensus 320 ~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 399 (732)
T Consensus 255 -------------------------------------------------------------------------------- 254 (416)
T 2pm9_A 255 -------------------------------------------------------------------------------- 254 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 004739 400 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRT 479 (732)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~ 479 (732)
T Consensus 255 -------------------------------------------------------------------------------- 254 (416)
T 2pm9_A 255 -------------------------------------------------------------------------------- 254 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeec-cCCCCccccccC
Q 004739 480 GRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIH-RRGDSARETVDA 558 (732)
Q Consensus 480 g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s 558 (732)
..+. +|...|.+++|+
T Consensus 255 ---------------------------------------------------------------~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 255 ---------------------------------------------------------------QTLNQGHQKGILSLDWC 271 (416)
T ss_dssp ---------------------------------------------------------------BCCCSCCSSCEEEEEEC
T ss_pred ---------------------------------------------------------------EEeecCccCceeEEEeC
Confidence 0011 245567788999
Q ss_pred C-CCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCC-CEEEEecCCCcEEEEEcCcccEEEEEec
Q 004739 559 N-GSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRG-DYIASGSDDGRWFIWEKQTGRLIKMLLG 636 (732)
Q Consensus 559 ~-d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg-~~lasgs~Dg~i~iWd~~tg~~~~~l~g 636 (732)
| ++.+|++++.++...+|+... .+.+..+.+|...++++. |+|++ ++|++++.|++|+|||+.+++.......
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v~~~~----~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 346 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWCFKTK----FAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE 346 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCCCCEE----ECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--
T ss_pred CCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCceEEEE----ECCCCCCEEEEEecCCcEEEEEccCCCCCccccc
Confidence 9 889999997777777899877 788899999999877666 69999 8999999999999999998765433322
Q ss_pred -----------------------------------CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004739 637 -----------------------------------DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 670 (732)
Q Consensus 637 -----------------------------------H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~ 670 (732)
|...|++++|+|+|++||+++.|++|+||++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 347 TETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp --------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 7888999999999999999999999999999875
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.9e-38 Score=326.67 Aligned_cols=216 Identities=20% Similarity=0.306 Sum_probs=177.3
Q ss_pred hhhhccccEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe-----eEEEEccCCCcCeEEEEEecCCCCCE
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDEL 78 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~-----~~~~~~~~h~~~V~~~~~s~~~~g~~ 78 (732)
+.+++++..+|+||.+.|++++|+|+ +++||||+.|++|+|||+.+.+ ....+ .+|...|.+++|+|+ |++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~d--g~~ 100 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSD--GQF 100 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTT--SSE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCC--CCE
Confidence 45667788899999999999999997 6899999999999999987653 45556 799999999999999 599
Q ss_pred EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004739 79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 158 (732)
Q Consensus 79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 158 (732)
|++++.|+.|++|+..... .......+...+..+.+++.+ ++|++++.|+.+++||+.....
T Consensus 101 l~s~~~d~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~------- 162 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGT----------TTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCK------- 162 (340)
T ss_dssp EEEEETTSEEEEEETTTTE----------EEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE-------
T ss_pred EEEEcccccceEEeecccc----------eeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCce-------
Confidence 9999999999999998632 245566678888999999954 8899999999999999876531
Q ss_pred CcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
.......|...+..++|+++. ..++++++.|+.|++||+++.+.+..+
T Consensus 163 -----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-------------- 211 (340)
T 4aow_A 163 -----------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-------------- 211 (340)
T ss_dssp -----------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE--------------
T ss_pred -----------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe--------------
Confidence 112233466688999998864 347889999999999999987544333
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. +|++++|+|++++|++++.||.|++||+.+
T Consensus 212 ------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 212 ------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp ------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred ------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 44555 699999999999999999999999999877
No 29
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=330.06 Aligned_cols=285 Identities=15% Similarity=0.170 Sum_probs=233.0
Q ss_pred cCCCcCeEEEEEecCC--CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe
Q 004739 59 TGHSANVFCTKFVPET--SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~--~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s 136 (732)
.+|.+.|.+++|+|+. ++.+|+||+.|++|+||++..... .....+.+|...|.+++|+|++ .++++++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~--------~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s 99 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL--------DLQWSLEGHQLGVVSVDISHTL-PIAASSS 99 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE--------EEEEEECCCSSCEEEEEECSSS-SEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe--------eeeeeeccCCCCEEEEEECCCC-CEEEEEe
Confidence 7999999999999852 247999999999999999975321 2245788999999999999954 8999999
Q ss_pred CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 137 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 137 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
.|+.|++||+.+++.. .....+...+.+++|+|+ +++|++|+.|+.|++||+++
T Consensus 100 ~D~~i~lWd~~~~~~~-------------------------~~~~~~~~~~~~~~~spd-g~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQI-------------------------KSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp TTSEEEEEETTTTEEE-------------------------EEEECCTTCCCCEEECTT-SSEEEEECTTSEEEEEETTT
T ss_pred CCCcEEEEECCCCCEE-------------------------EEEeCCCccEEEEEECCC-CCEEEEEcCCCcEEEEEcCC
Confidence 9999999999887521 111123446788999999 78999999999999999998
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCcee
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM 296 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 296 (732)
.+....+ ..+.. .|.+++|+|+|++|++++.||.|++||+.+++
T Consensus 154 ~~~~~~~--------------------~~~~~-~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~--------------- 197 (321)
T 3ow8_A 154 GKKEYSL--------------------DTRGK-FILSIAYSPDGKYLASGAIDGIINIFDIATGK--------------- 197 (321)
T ss_dssp CSEEEEE--------------------ECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------
T ss_pred CceeEEe--------------------cCCCc-eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------
Confidence 7544332 22333 59999999999999999999999999987621
Q ss_pred eeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhh
Q 004739 297 SFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECL 376 (732)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 376 (732)
T Consensus 198 -------------------------------------------------------------------------------- 197 (321)
T 3ow8_A 198 -------------------------------------------------------------------------------- 197 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHH
Q 004739 377 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKH 456 (732)
Q Consensus 377 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 456 (732)
T Consensus 198 -------------------------------------------------------------------------------- 197 (321)
T 3ow8_A 198 -------------------------------------------------------------------------------- 197 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCccccccc
Q 004739 457 IAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANF 536 (732)
Q Consensus 457 l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~ 536 (732)
T Consensus 198 -------------------------------------------------------------------------------- 197 (321)
T 3ow8_A 198 -------------------------------------------------------------------------------- 197 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEecC
Q 004739 537 LHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSD 616 (732)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~ 616 (732)
.++.+.+|...+.++. |+||+++||+|+.
T Consensus 198 -----------------------------------------------~~~~~~~h~~~v~~l~----~spd~~~l~s~s~ 226 (321)
T 3ow8_A 198 -----------------------------------------------LLHTLEGHAMPIRSLT----FSPDSQLLVTASD 226 (321)
T ss_dssp -----------------------------------------------EEEEECCCSSCCCEEE----ECTTSCEEEEECT
T ss_pred -----------------------------------------------EEEEEcccCCceeEEE----EcCCCCEEEEEcC
Confidence 2233455666655555 6999999999999
Q ss_pred CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCc-----hhHHHHH
Q 004739 617 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDT-----ADVLEAM 691 (732)
Q Consensus 617 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~-----~~~~~~~ 691 (732)
|++|+|||+++++++..+.+|...|++++|+|++++|+|+|.|++|+|||+.+++++.++.+|.+++. ++...++
T Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~ 306 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV 306 (321)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988874 3455566
Q ss_pred HHHHHHhhhccccc
Q 004739 692 ESNQRKLSRNREHS 705 (732)
Q Consensus 692 ~~~~~~~~~~~~~~ 705 (732)
....+...++||.+
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 77777778888754
No 30
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.3e-38 Score=336.61 Aligned_cols=220 Identities=14% Similarity=0.175 Sum_probs=174.6
Q ss_pred hccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEE-ccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 8 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~-~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.++..+...+|...|+||+|+| ++++||+|+.||+|+|||+.+++....+ ..+|.+.|++++|+|.. +++|++|+.|
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D 186 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSME 186 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSS
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCC
Confidence 4456677888999999999999 5679999999999999999877644333 15899999999999853 5899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
|+|++||++..... .+.....+...+.+++|+|+ +.+|++|+.||.|++||++...
T Consensus 187 ~~v~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 187 GTTRLQDFKGNILR--------VFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp SCEEEEETTSCEEE--------EEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSCB---------------
T ss_pred CEEEEeeccCCcee--------EEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcce---------------
Confidence 99999999853211 11222234456889999995 4899999999999999986532
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
+.....|...|.+++|+|++..+|++|+.|+.|++||+++.+....+.. ..+
T Consensus 243 -----------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-----------------~~~ 294 (435)
T 4e54_B 243 -----------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-----------------SLP 294 (435)
T ss_dssp -----------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-----------------CCB
T ss_pred -----------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE-----------------eee
Confidence 2223457779999999999667899999999999999988754432210 134
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|.. .|++++|+|+|++|++++.||.|+|||+.++.
T Consensus 295 h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 295 HRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp CSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred ccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 555 69999999999999999999999999998854
No 31
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-38 Score=336.42 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=142.4
Q ss_pred EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004739 55 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134 (732)
Q Consensus 55 ~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 134 (732)
..+ .+|..+|++++|+|+ +.+|++|+.||+|++||+.++ .....+.+|...|.+++|+|+ +++|++
T Consensus 102 ~~l-~gh~~~V~~~~~~p~--~~~l~s~s~Dg~i~vwd~~~~----------~~~~~l~~h~~~V~~v~~~~~-~~~l~s 167 (410)
T 1vyh_C 102 YAL-SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETG----------DFERTLKGHTDSVQDISFDHS-GKLLAS 167 (410)
T ss_dssp CEE-ECCSSCEEEEEECSS--SSEEEEEESSSCEEEEETTTC----------CCCEEECCCSSCEEEEEECTT-SSEEEE
T ss_pred Eee-cccCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------cEEEEEeccCCcEEEEEEcCC-CCEEEE
Confidence 344 689999999999999 589999999999999999864 236788999999999999995 489999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
|+.|++|++||+.+.+ .+....+|...|.+++|+|+ +.+|++|+.|++|++||+
T Consensus 168 gs~D~~i~iwd~~~~~-------------------------~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFE-------------------------CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp EETTSCCCEEETTSSC-------------------------EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET
T ss_pred EeCCCeEEEEeCCCCc-------------------------eeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEC
Confidence 9999999999997765 22334567779999999998 789999999999999999
Q ss_pred CCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 215 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
+++..+..+ .+|.. .|.++.|+|++++|++++.|+.|++||+.++.
T Consensus 222 ~~~~~~~~~--------------------~~h~~-~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 222 QTGYCVKTF--------------------TGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp TTCCEEEEE--------------------ECCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEEE--------------------eCCCc-cEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 987544333 44555 59999999999999999999999999998854
No 32
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=339.07 Aligned_cols=227 Identities=14% Similarity=0.165 Sum_probs=167.8
Q ss_pred hhhccccEee-eccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Ce---eEEEEccCCCcCeEEEEEecCCCCC
Q 004739 6 VRRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RK---LLHSIETGHSANVFCTKFVPETSDE 77 (732)
Q Consensus 6 ~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~---~~---~~~~~~~~h~~~V~~~~~s~~~~g~ 77 (732)
..+.+++..+ ++|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ +|...|.+++|+|+ ++
T Consensus 49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~--~~ 124 (437)
T 3gre_A 49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPN--FD 124 (437)
T ss_dssp GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTT--SS
T ss_pred cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCC--CC
Confidence 3456777888 89999999999999 999999999999999999876 43 23333 69999999999998 58
Q ss_pred EEEEEECCCcEEEEEcCCC-CCCCCCCCCCCCceeec--c--ccCceeEEE--EecCCCcEEEEEeCCCcEEEEECCCCC
Q 004739 78 LVVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQ--C--HTRRVKKLA--VEVGNPHVVWSASEDGTLRQHDFRQGS 150 (732)
Q Consensus 78 ~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~--~--h~~~v~~l~--~~p~~~~~l~s~s~dg~i~vwd~~~~~ 150 (732)
+|++|+.||.|++||+... .+.........++..+. . +...+.++. +++ ++.+|++++.|+.|++||+++++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCe
Confidence 9999999999999999521 11110000000111111 1 345566666 445 45899999999999999998876
Q ss_pred CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004739 151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 230 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 230 (732)
.. ..+ ....|...|++++|+|+ +.+|++|+.||.|++||+++.+.+..+.
T Consensus 204 ~~--------------~~~---------~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~------ 253 (437)
T 3gre_A 204 RL--------------QII---------ENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSWS------ 253 (437)
T ss_dssp EE--------------EEE---------ECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEEB------
T ss_pred ee--------------EEE---------ccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEEe------
Confidence 21 110 11125668999999999 8899999999999999999865444321
Q ss_pred CccccccccccccCCCccccEEEEEEcC----CCCEEEEEecCCeEEEEECCCCC
Q 004739 231 PCVNYFCPMHLSEHGRSSLHLTHVTFSP----NGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp----~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+|.. +|++++|+| ++++|++++.||.|++||+.+++
T Consensus 254 -------------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 254 -------------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp -------------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred -------------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 12333 599996664 68899999999999999998843
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-37 Score=322.88 Aligned_cols=326 Identities=11% Similarity=0.060 Sum_probs=254.1
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
|.++|.+++|+|||++++++..++.+.+|+.......... .+|...|.+++|+|+ +++|++++ ||.|++||+....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence 5678999999999999999888887877776655554444 489999999999999 58999998 9999999998643
Q ss_pred CCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 98 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
.. ..+..+. +|...|.+++|+|+ +++|++++.|+.|++||+.+++..
T Consensus 84 ~~-------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~----------------------- 132 (337)
T 1gxr_A 84 NK-------SPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPR----------------------- 132 (337)
T ss_dssp CC-------SCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--E-----------------------
T ss_pred ce-------eeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCCcc-----------------------
Confidence 22 1233333 78999999999995 489999999999999999876521
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
.......+...+.+++|+|+ +++|++++.|+.|++||+++.+.+..+ .+|.. .|.+++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~~~~~--------------------~~~~~-~i~~~~ 190 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCID 190 (337)
T ss_dssp EEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEE
T ss_pred eeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceeeee--------------------ecccC-ceEEEE
Confidence 11112235568999999998 789999999999999999987544333 33444 599999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004739 256 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l 335 (732)
|+|++++|++++.||.|++||+.+++.....
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------------------------------------- 221 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH------------------------------------------------- 221 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------------------------
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeee-------------------------------------------------
Confidence 9999999999999999999999873211000
Q ss_pred HHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHH
Q 004739 336 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 415 (732)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (732)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccC
Q 004739 416 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEAN 495 (732)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 495 (732)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCc
Q 004739 496 SDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIP 575 (732)
Q Consensus 496 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 575 (732)
.+...+.+++|+|++++|++++.++...+
T Consensus 222 ---------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 222 ---------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp ---------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 01122345566666666666655555555
Q ss_pred cccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEE
Q 004739 576 YQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVAT 655 (732)
Q Consensus 576 ~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S 655 (732)
|+.... ....+.+|...+.++. |+|++++|++++.||.|++||+.+++.+.. ..|...|++++|+|++++|++
T Consensus 251 ~~~~~~--~~~~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~ 323 (337)
T 1gxr_A 251 LHVNKP--DKYQLHLHESCVLSLK----FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp EETTSS--CEEEECCCSSCEEEEE----ECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEE
T ss_pred EECCCC--CeEEEcCCccceeEEE----ECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEE
Confidence 666552 3456788888866555 699999999999999999999999998854 458999999999999999999
Q ss_pred ecCCCcEEEEcC
Q 004739 656 SGIDNTIKIWTP 667 (732)
Q Consensus 656 ~s~D~~i~vW~~ 667 (732)
++.||+|++|++
T Consensus 324 ~~~dg~i~iw~~ 335 (337)
T 1gxr_A 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred ecCCCeEEEEEE
Confidence 999999999985
No 34
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.6e-37 Score=323.78 Aligned_cols=218 Identities=13% Similarity=0.205 Sum_probs=176.5
Q ss_pred hhccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
.+++..+.+.+|...|++++|+|++ ++||+|+.|+.|+|||+.+++....+. .+|...|.+++|+|+. +++|++++.
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~ 139 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSSI 139 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEET
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC-CCEEEEEeC
Confidence 4567788999999999999999999 999999999999999999888777763 2699999999999942 589999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeec---cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
|+.|++||+.... +..+. +|...|.+++|+|++ ++|++++.|+.|++||++ ++.
T Consensus 140 d~~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~---------- 196 (383)
T 3ei3_B 140 RGATTLRDFSGSV-----------IQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHE---------- 196 (383)
T ss_dssp TTEEEEEETTSCE-----------EEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCE----------
T ss_pred CCEEEEEECCCCc-----------eEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCE----------
Confidence 9999999998521 33443 445889999999955 899999999999999984 221
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
+.....|...|.+++|+|++..+|++|+.|+.|++||+++.+.... ++..
T Consensus 197 ---------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~------ 246 (383)
T 3ei3_B 197 ---------------IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS---------YIAE------ 246 (383)
T ss_dssp ---------------EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC---------EEEE------
T ss_pred ---------------EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc---------eEEE------
Confidence 1112246678999999999434999999999999999987532211 1111
Q ss_pred ccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCCC
Q 004739 242 SEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+|.. .|++++|+| ++++|++++.|+.|++||+.++.
T Consensus 247 --~~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 247 --MPHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp --EECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred --ecCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 12333 699999999 99999999999999999998854
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=318.34 Aligned_cols=221 Identities=18% Similarity=0.286 Sum_probs=177.5
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.....|.+|.++|++++|+|++++|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+ +++|++++.||.|+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence 345668999999999999999999999999999999999999999998 799999999999998 58999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCcccce
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
+||+.+.. ++..+. |...|.+++|+|++ .++++++.+ +.|++||+...............
T Consensus 100 iwd~~~~~----------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~--- 164 (369)
T 3zwl_B 100 LWDVSNGQ----------CVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE--- 164 (369)
T ss_dssp EEETTTCC----------EEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS---
T ss_pred EEECCCCc----------EEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccc---
Confidence 99998642 245555 88899999999955 889999988 99999999887643211110000
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCcccccccccccc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
....+. .......+.+++|+|+ +++|++++.||.|++||+++ .+.+..+
T Consensus 165 --------~~~~~~-~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------- 214 (369)
T 3zwl_B 165 --------PIHKII-THEGLDAATVAGWSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSI-------------------- 214 (369)
T ss_dssp --------CSEEEE-CCTTCCCEEEEEECGG-GCEEEEEETTSEEEEEETTTTTEEEEEE--------------------
T ss_pred --------eeeecc-CCcCccceeEEEEcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEE--------------------
Confidence 000111 1112228999999998 78999999999999999987 3332222
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 215 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 215 DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 33434 599999999999999999999999999987
No 36
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.3e-37 Score=311.39 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=139.4
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
...++ .+|.+.|.+++|+|+ +++|++++.||+|++||+.+. ..+..+..|...|.+++|+|++ ++|
T Consensus 5 ~~~~~-~~h~~~V~~~~fsp~--~~~l~s~~~dg~v~lWd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l 70 (304)
T 2ynn_A 5 IKKTF-SNRSDRVKGIDFHPT--EPWVLTTLYSGRVELWNYETQ----------VEVRSIQVTETPVRAGKFIARK-NWI 70 (304)
T ss_dssp CEEEE-EEECSCEEEEEECSS--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEEEGGG-TEE
T ss_pred eEEee-cCCCCceEEEEECCC--CCEEEEEcCCCcEEEEECCCC----------ceeEEeeccCCcEEEEEEeCCC-CEE
Confidence 44556 799999999999999 599999999999999999864 2367888999999999999954 899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
++|+.|+.|++||+.+++. +.....|...|.+++|+|+ +.+|++|+.|++|++|
T Consensus 71 ~s~s~d~~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~-~~~l~sgs~D~~v~lW 124 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGEK-------------------------VVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLW 124 (304)
T ss_dssp EEEETTSEEEEEETTTCCE-------------------------EEEEECCSSCEEEEEECSS-SSEEEEEETTSCEEEE
T ss_pred EEECCCCEEEEEECCCCcE-------------------------EEEEeCCCCcEEEEEEcCC-CCEEEEECCCCeEEEE
Confidence 9999999999999988762 1222357778999999999 7899999999999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|+++...+. ..+ .+|.. .|++++|+| ++.+|++|+.|+.|++||+.+
T Consensus 125 d~~~~~~~~------------~~~-------~~h~~-~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 125 NWENNWALE------------QTF-------EGHEH-FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp EGGGTTEEE------------EEE-------CCCCS-CEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred ECCCCcchh------------hhh-------cccCC-cEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 998653221 111 45555 599999999 678999999999999999876
No 37
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.3e-37 Score=323.75 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=174.6
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------eEEEEccCCCcCeEEEEEecC--CCC---CE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---EL 78 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~------~~~~~~~~h~~~V~~~~~s~~--~~g---~~ 78 (732)
...+.+++|.++|++++|+| ++|++|+.||+|+|||+.+++ .+..+ .+|...|.+++|+|+ .++ .+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccE
Confidence 45677889999999999998 799999999999999999887 67777 699999999999997 115 69
Q ss_pred EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccc-----cCceeEEEEe----cCCCcE-EEEEeCCCcEEEEECCC
Q 004739 79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~----p~~~~~-l~s~s~dg~i~vwd~~~ 148 (732)
|++++.|+.|++||+.+..... ...+..+..| ...|.+++|+ |++ .+ |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred EEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999998643210 0115667778 5899999999 855 77 99999999999999988
Q ss_pred ------CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004739 149 ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 222 (732)
Q Consensus 149 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~ 222 (732)
.+..... ....+.. .+.....+...|.+++|+|+ + +|++++.|+.|++||+++.+.+..
T Consensus 158 ~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 158 FADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp SSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred cccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeEE
Confidence 4422100 0000000 01111345668999999999 6 999999999999999998755443
Q ss_pred cccCCCCCCccccccccccccCCC---ccccEEEEEEcCCCCEEEEEecC---CeEEEEECCCC
Q 004739 223 CQKRMSPPPCVNYFCPMHLSEHGR---SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA 280 (732)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~~ 280 (732)
+... .+| .. .|.+++|+|++++|++++.| |.|++||+.++
T Consensus 223 ~~~~-----------------~~h~~~~~-~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 223 FESQ-----------------HSMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp EECC-----------------C---CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred Eecc-----------------ccccccCC-ccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 3100 113 33 69999999999999999999 99999999874
No 38
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-38 Score=341.99 Aligned_cols=218 Identities=11% Similarity=0.089 Sum_probs=159.9
Q ss_pred EeeeccCCceeEEEEcCCC---------CEEEE-------------------EeCCCcEEEEeCCCCeeE----EEEccC
Q 004739 13 RELEGHQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIETG 60 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg---------~~las-------------------g~~dg~i~vWd~~~~~~~----~~~~~~ 60 (732)
.++. +.+.|.+++|+|++ ++||+ ++.|++|+|||+.+++.. ..+ .+
T Consensus 128 ~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-~~ 205 (524)
T 2j04_B 128 FIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-VH 205 (524)
T ss_dssp EEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-EE
T ss_pred EEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-Ee
Confidence 3443 67899999999876 56666 457889999999877642 234 56
Q ss_pred CCcCeEEEEEecC----CCCCEEEEEECCCcEEEEEcCCCCCCCC-CCCCCCCceeeccccCceeEEEEecCCCcEEEEE
Q 004739 61 HSANVFCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA 135 (732)
Q Consensus 61 h~~~V~~~~~s~~----~~g~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~ 135 (732)
|.+.|.+++|+|+ .++.+|++++.||+|++||+........ ......+...+.+|...|++++|+| + ..|++|
T Consensus 206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasg 283 (524)
T 2j04_B 206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCG 283 (524)
T ss_dssp CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEE
T ss_pred cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEE
Confidence 7889999999996 1247999999999999999986432100 0001134567889999999999998 3 589999
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE--EecCCCC-CEEEEEeCCCeEEEE
Q 004739 136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRP-HLLLVGGSDAFARLY 212 (732)
Q Consensus 136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~-~~l~tg~~dg~v~iw 212 (732)
+.||+|++||++++..+ ......|...|.++ .|+|+ + .+|++|+.|++|+||
T Consensus 284 s~DgtV~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~~-g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSDF-EDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp ETTSEEEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCTT-SCCEEEEEETTSEEEEE
T ss_pred eCCCEEEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCCC-CCeEEEEeccCCeEEEE
Confidence 99999999999875421 11123466789999 56776 5 899999999999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCcc-ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|+++.+.+..+ .+|.. ..|.+++|+|+++.|++++.|++|++||+++
T Consensus 339 D~~~~~~~~~~--------------------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 339 NPKDIATTKTT--------------------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp CGGGHHHHCEE--------------------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC
T ss_pred ECCCCCccccc--------------------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc
Confidence 99875433222 12221 1378899999999999999999999999887
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-36 Score=342.83 Aligned_cols=215 Identities=20% Similarity=0.251 Sum_probs=178.3
Q ss_pred hccccEeeeccCCceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-----eeEEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 8 RLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~-----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
.+++...|++|.+.|++++|+|++ ++|+||+.|++|+|||+.+. .....+ .+|...|.+++|+|+ +++|++
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~s 447 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALS 447 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEE
T ss_pred ccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEE
Confidence 345567899999999999999865 79999999999999998753 344556 799999999999999 599999
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
|+.|++|+|||+.++ .++..+.+|...|.+++|+|++ ++|++++.|++|++||+......
T Consensus 448 gs~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~--------- 507 (694)
T 3dm0_A 448 GSWDGELRLWDLAAG----------VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY--------- 507 (694)
T ss_dssp EETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE---------
T ss_pred EeCCCcEEEEECCCC----------cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce---------
Confidence 999999999999864 2367888999999999999955 88999999999999997543210
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
. ......+|...|.+++|+|++ ...|++|+.|++|++||+++.+....+
T Consensus 508 ---~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~----------------- 557 (694)
T 3dm0_A 508 ---T----------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL----------------- 557 (694)
T ss_dssp ---E----------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE-----------------
T ss_pred ---e----------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE-----------------
Confidence 0 111224577789999999984 258999999999999999876544332
Q ss_pred cccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 241 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|++++|+|++++|++++.||.|++||+.+
T Consensus 558 ---~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 558 ---AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp ---CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred ---cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 45655 599999999999999999999999999987
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=307.45 Aligned_cols=210 Identities=20% Similarity=0.231 Sum_probs=171.9
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
...+++.+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+ ..|...|.+++|+|+ +++|++++.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d 80 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKD 80 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETT
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCC
Confidence 3456788999999999999999 99999999999999999999999888888 789999999999998 5999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+.|++|++...... .++..+.+|...|.++.|. ++++++++.||.|++|| ..+
T Consensus 81 g~i~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~--------------- 133 (313)
T 3odt_A 81 TMINGVPLFATSGE-------DPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS--------------- 133 (313)
T ss_dssp SCEEEEETTCCTTS-------CC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE---------------
T ss_pred CeEEEEEeeecCCC-------CcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc---------------
Confidence 99999999864322 3467788999999999994 37899999999999999 221
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
.+.....|...+.++.|.|.++.++++++.|+.|++||... .... + ..
T Consensus 134 ----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~-------------~-------~~ 181 (313)
T 3odt_A 134 ----------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKT-------------F-------SG 181 (313)
T ss_dssp ----------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--EEEE-------------E-------CS
T ss_pred ----------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--eEEE-------------E-------ec
Confidence 01112235668999999984488999999999999999432 1111 1 22
Q ss_pred CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.....+.+++|+|++. +++++.||.|++||+.+
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 1223699999999998 99999999999999876
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-36 Score=325.48 Aligned_cols=203 Identities=22% Similarity=0.364 Sum_probs=168.9
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
.+..+.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+..+ .+|...|.+++|++ ++|++|+.||+|
T Consensus 108 ~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~----~~l~s~~~dg~i 181 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRD----NIIISGSTDRTL 181 (445)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEET----TEEEEEETTSCE
T ss_pred cceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecC----CEEEEEeCCCeE
Confidence 4467889999988643 24556899999999999999999999999988 79999999999984 589999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
++||+.++ .++..+.+|...|.++.|++ +.+++++.||.|++||+.+++..
T Consensus 182 ~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~---------------- 232 (445)
T 2ovr_B 182 KVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL---------------- 232 (445)
T ss_dssp EEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE----------------
T ss_pred EEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE----------------
Confidence 99999864 33678889999999999964 67999999999999999886521
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
.....|...|.++.| + +.++++|+.||.|++||+++.+.+..+ .+|..
T Consensus 233 ---------~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~~~ 280 (445)
T 2ovr_B 233 ---------HVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGHTN 280 (445)
T ss_dssp ---------EEEECCSSCEEEEEE--C-SSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCCSS
T ss_pred ---------EEEcCCcccEEEEEE--C-CCEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCCCC
Confidence 112246668999999 3 678999999999999999877544333 34544
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.|.+++| ++++|++++.||.|++||+.+++
T Consensus 281 -~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 281 -RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp -CEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred -ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence 5999999 88999999999999999998854
No 42
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.6e-36 Score=316.22 Aligned_cols=231 Identities=12% Similarity=0.182 Sum_probs=172.0
Q ss_pred eeeccCCceeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCC--CCEEEEEE
Q 004739 14 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA 83 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~d----g~~lasg~~dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~--g~~l~s~~ 83 (732)
...+|.++|++++|+|+ ...+++++.++.|+|||+.+++.+..+. ..|...|++++|+|+.. +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 45589999999999984 4456666667799999999887766652 12668899999999842 36999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.||.|++||+.+. .++..+.+|...|.+++|+|+++++|++++.||.|++||+++++..
T Consensus 93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----------- 151 (366)
T 3k26_A 93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV----------- 151 (366)
T ss_dssp TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence 9999999999863 3367888999999999999966699999999999999999876521
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCC-------C-Ccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP-------P-PCVNY 235 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-------~-~~~~~ 235 (732)
..+.....|...|.+++|+|+ +.+|++++.||.|++||+++.+.+..+...... . .....
T Consensus 152 -----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 152 -----------AIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp -----------EEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred -----------EEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 111122456779999999998 789999999999999999976544332210000 0 00000
Q ss_pred ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
..+......+|.. .|.+++|+ +++|++++.||.|++||+.+.
T Consensus 220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence 0000011123444 69999998 779999999999999998873
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.9e-36 Score=313.78 Aligned_cols=214 Identities=13% Similarity=0.160 Sum_probs=167.1
Q ss_pred cEeeeccCCceeEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC-CCCEEEEEECCC
Q 004739 12 ERELEGHQGCVNAISWNSKGSLL-ISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA 86 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~l-asg~~---dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~-~g~~l~s~~~dg 86 (732)
.+.+++|...|++++|+|++..+ ++|+. |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34568899999999999999655 56665 89999999999887665545899999999999982 138999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE------ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
.|++||+.+.. .++..+.+|...|.++.| +| ++++|++++.||.|++||+++++....
T Consensus 91 ~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~------ 154 (357)
T 3i2n_A 91 NLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVA------ 154 (357)
T ss_dssp CEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSE------
T ss_pred eEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcce------
Confidence 99999998643 136788899999999965 56 458999999999999999988752210
Q ss_pred ccceEEeeccCCccccccCCCC-CccceEEEE----ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPK-QTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~i~----~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 235 (732)
.+....+ ....+.++. |+|+ +.+|++++.|+.|++||+++.+....
T Consensus 155 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~------------- 205 (357)
T 3i2n_A 155 ---------------NMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWE------------- 205 (357)
T ss_dssp ---------------EECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEE-------------
T ss_pred ---------------eccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeee-------------
Confidence 1111111 133678887 6777 78999999999999999987653211
Q ss_pred ccccccccCCCccccEEEEEEcC---CCCEEEEEecCCeEEEEECCC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp---~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+.. .|.+++|+| ++++|++++.||.|++||+.+
T Consensus 206 --------~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 206 --------TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp --------EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred --------cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 12333 599999999 999999999999999999876
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.7e-36 Score=313.16 Aligned_cols=224 Identities=15% Similarity=0.162 Sum_probs=174.9
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 14 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+ .+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEE
Confidence 456699999999999999999999999999999999987 77788 789999999999998 5999999999999999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
|+.+... .....+..|...|.+++|+|++ ++|++++.|+.|++||+...... ..
T Consensus 80 d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------~~------ 133 (372)
T 1k8k_C 80 TLKGRTW--------KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------WV------ 133 (372)
T ss_dssp EEETTEE--------EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------EE------
T ss_pred ECCCCee--------eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------ee------
Confidence 9976421 1134456789999999999954 89999999999999999876521 00
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccc-----cCCCCCCccccccccccccCCC
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ-----KRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
.......|...|.+++|+|+ +.+|++++.|+.|++||++......... .......++..+ .+|
T Consensus 134 ----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 201 (372)
T 1k8k_C 134 ----CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSS 201 (372)
T ss_dssp ----EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCC
T ss_pred ----eeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCC
Confidence 01112345668999999998 7899999999999999986432111000 000011122222 234
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.. .|++++|+|++++|++++.||.|++||+.+
T Consensus 202 ~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 202 CG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp SS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred CC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 44 699999999999999999999999999876
No 45
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-36 Score=313.78 Aligned_cols=171 Identities=13% Similarity=0.196 Sum_probs=140.5
Q ss_pred CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004739 51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130 (732)
Q Consensus 51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 130 (732)
.+....+ .+|.+.|++++|+|+ +++|++|+.||+|++||+.+. ..+..+..|...|.+++|+|++ +
T Consensus 45 ~~~~~~l-~gH~~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~~~----------~~~~~~~~~~~~v~~~~~s~~~-~ 110 (340)
T 1got_B 45 MRTRRTL-RGHLAKIYAMHWGTD--SRLLLSASQDGKLIIWDSYTT----------NKVHAIPLRSSWVMTCAYAPSG-N 110 (340)
T ss_dssp CCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTC----------CEEEEEECSSSCEEEEEECTTS-S
T ss_pred chhheee-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEECCCC----------CcceEeecCCccEEEEEECCCC-C
Confidence 3455666 799999999999999 599999999999999999864 2367788899999999999954 8
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
+|++++.|+.|++||+.+.+.. ........+|...|.++.|+++ + .+++++.|++|+
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~s~d~~i~ 167 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDD-N-QIVTSSGDTTCA 167 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEET-T-EEEEEETTSCEE
T ss_pred EEEEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCC-C-cEEEEECCCcEE
Confidence 9999999999999999775411 0011122356778999999987 4 699999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+||+++++.+..+ .+|.. .|++++|+|++++|++|+.|+.|++||+.+
T Consensus 168 ~wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~ 215 (340)
T 1got_B 168 LWDIETGQQTTTF--------------------TGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVRE 215 (340)
T ss_dssp EEETTTTEEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEECCCCcEEEEE--------------------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999987654433 45655 599999999999999999999999999876
No 46
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.7e-37 Score=322.75 Aligned_cols=313 Identities=15% Similarity=0.177 Sum_probs=253.8
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 120 (732)
..+..|+..+..+...+ .+|.+.|++++|+|+ +++|+||+.|++|+|||+.+. .....+..|...|.
T Consensus 46 ~~~~~~~~~~~~~~~~l-~gH~~~V~~~~~sp~--~~~l~s~s~D~~v~iWd~~~~----------~~~~~~~~h~~~v~ 112 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTL-QGHSGKVYSLDWTPE--KNWIVSASQDGRLIVWNALTS----------QKTHAIKLHCPWVM 112 (380)
T ss_dssp GGCCCCCCCCCEEEEEE-CCCSSCEEEEEECTT--SSCEEEEETTSEEEEEETTTT----------EEEEEEECCCTTCC
T ss_pred ccccccccceeEEeecc-cccccEEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC----------ccceEEecCCCCEE
Confidence 45567888888888888 899999999999999 589999999999999999864 23678889999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE
Q 004739 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 200 (732)
Q Consensus 121 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 200 (732)
+++|+|++ ++|++|+.|+.|++||+.+.... .+.........+|...+.++.|.|+++..|
T Consensus 113 ~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~------------------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 113 ECAFAPNG-QSVACGGLDSACSIFNLSSQADR------------------DGNMPVSRVLTGHKGYASSCQYVPDQETRL 173 (380)
T ss_dssp CCEECTTS-SEEEECCSSSCCEEEECCCCSSC------------------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred EEEECCCC-CEEEEeeCCCcEEEEECCCCccc------------------cCCccceeeccCCCcceEEEEEecCCCCEE
Confidence 99999954 89999999999999999764311 011112233456788899999999867789
Q ss_pred EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004739 201 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 201 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~ 279 (732)
++|+.|++|++||+++++.+..+... ...+|.. .|.+++|+| ++++|++|+.|+.|++||++.
T Consensus 174 ~s~s~D~~i~~wd~~~~~~~~~~~~~---------------~~~~h~~-~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQRISIFGSE---------------FPSGHTA-DVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp EEECTTSCEEEECTTTCCEEEEECCC---------------SSSSCCS-CEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred EEECCCCcEEEEEcCCCcEEEEeecc---------------cCCCCcc-CeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 99999999999999987654333110 0134544 599999987 889999999999999999875
Q ss_pred CCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHH
Q 004739 280 AGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEV 359 (732)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 359 (732)
..
T Consensus 238 ~~------------------------------------------------------------------------------ 239 (380)
T 3iz6_a 238 TS------------------------------------------------------------------------------ 239 (380)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred HhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhcc
Q 004739 360 LEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCL 439 (732)
Q Consensus 360 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (732)
T Consensus 240 -------------------------------------------------------------------------------- 239 (380)
T 3iz6_a 240 -------------------------------------------------------------------------------- 239 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhc
Q 004739 440 DPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVD 519 (732)
Q Consensus 440 ~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~ 519 (732)
T Consensus 240 -------------------------------------------------------------------------------- 239 (380)
T 3iz6_a 240 -------------------------------------------------------------------------------- 239 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceee
Q 004739 520 FHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK 599 (732)
Q Consensus 520 ~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~ 599 (732)
+.++.+.||...++++.
T Consensus 240 ---------------------------------------------------------------~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 240 ---------------------------------------------------------------RAVRTYHGHEGDINSVK 256 (380)
T ss_dssp ---------------------------------------------------------------CCCEEECCCSSCCCEEE
T ss_pred ---------------------------------------------------------------cceEEECCcCCCeEEEE
Confidence 02234567777766666
Q ss_pred ecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcc-------cEEEEeecCCCCeEEEecCCCcEEEEcCCCCCC
Q 004739 600 QASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEA-------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVP 672 (732)
Q Consensus 600 ~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~-------~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~ 672 (732)
|+|+|++|+||+.||+|+|||+.+++++..+..|.. .|++++|+|+|++|++++.||+|+|||+..++.
T Consensus 257 ----~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~ 332 (380)
T 3iz6_a 257 ----FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332 (380)
T ss_dssp ----ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred ----EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence 699999999999999999999999999999987643 499999999999999999999999999999887
Q ss_pred cccc----CCCCCCCc-----hhHHHHHHHHHHHhhhcccccc
Q 004739 673 SIVS----GGAAGPDT-----ADVLEAMESNQRKLSRNREHSL 706 (732)
Q Consensus 673 ~~~~----~gh~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 706 (732)
+..+ .||.+++. ++...+++.+.+...++|+...
T Consensus 333 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 7665 68988874 4666788888899999998754
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.7e-36 Score=322.85 Aligned_cols=346 Identities=12% Similarity=0.056 Sum_probs=252.0
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
..+++++|+|++++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+ +++|++|+.|+.|++||+.+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~--- 129 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFN--- 129 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSC---
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCc---
Confidence 34558999999999999999999999999988776655 455 34445567888 589999999999999999853
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
.+...+.+|...|++++|+|++ ++|++++.|+.|++||+.+++.. ..
T Consensus 130 -------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~-------------------------~~ 176 (420)
T 3vl1_A 130 -------LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNP-------------------------RT 176 (420)
T ss_dssp -------EEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCC-------------------------EE
T ss_pred -------ceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCc-------------------------eE
Confidence 2356667999999999999954 89999999999999999887632 11
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc--cc-cc-ccCCCccccEEEEE
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC--PM-HL-SEHGRSSLHLTHVT 255 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~~~~~~~i~~l~ 255 (732)
...|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+.........+.... +. .. ....+ ...+++++
T Consensus 177 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~v~~~~ 254 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIS-TSKKNNLE 254 (420)
T ss_dssp EECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGC-CCCCCTTC
T ss_pred EcCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecc-cCcccceE
Confidence 2346779999999998 78999999999999999998876555432111000000000 00 00 00001 11355555
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004739 256 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 256 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l 335 (732)
|+|++++|++++.||.|++||+.+++...
T Consensus 255 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------------------------------------- 283 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGVITVHNVFSKEQTI--------------------------------------------------- 283 (420)
T ss_dssp SSCTTEEEEEEETTSCEEEEETTTCCEEE---------------------------------------------------
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCCceeE---------------------------------------------------
Confidence 66777777777777777777766522100
Q ss_pred HHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHH
Q 004739 336 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY 415 (732)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (732)
T Consensus 284 -------------------------------------------------------------------------------- 283 (420)
T 3vl1_A 284 -------------------------------------------------------------------------------- 283 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccC
Q 004739 416 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEAN 495 (732)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 495 (732)
T Consensus 284 -------------------------------------------------------------------------------- 283 (420)
T 3vl1_A 284 -------------------------------------------------------------------------------- 283 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCC-CCCCCCCCCCCC
Q 004739 496 SDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSS-GSPSSSSQNDRI 574 (732)
Q Consensus 496 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~ 574 (732)
.....|...|.+++|+|++. +|++++.++...
T Consensus 284 -----------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 284 -----------------------------------------------QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -----------------------------------------------EECCTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred -----------------------------------------------EcccccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 00012445677889999998 888887777777
Q ss_pred ccccccccccceeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcc---------cEEEEEecCcccEEEEe
Q 004739 575 PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTG---------RLIKMLLGDEAVVNCVQ 645 (732)
Q Consensus 575 ~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg---------~~~~~l~gH~~~V~~v~ 645 (732)
+|+.......+..+.+|.... +..+ +++++++|++|+.|++|++||+.+. .....+.+|.+.|.+++
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~--v~~~--~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 392 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTP--INNV--YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFC 392 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSC--EEEE--EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEE
T ss_pred EEEcCCCcCchhhhhccCCCC--ceEE--EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEE
Confidence 899887545688888854332 3333 3568999999999999999998874 33446778999999999
Q ss_pred ecCCCC---eEEEecCCCcEEEEcCCC
Q 004739 646 CHPFDC---VVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 646 fsp~~~---~l~S~s~D~~i~vW~~~~ 669 (732)
|+|+++ .|+++|.+|.+++|++..
T Consensus 393 ~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 393 YVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EccCCCCcceEEEEcCCceEEEEeccC
Confidence 999999 777888899999999864
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-35 Score=308.81 Aligned_cols=217 Identities=8% Similarity=0.061 Sum_probs=143.9
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCee----------EEEEccCCCcCeEEEEEe
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDT-------HINVWSYSSRKL----------LHSIETGHSANVFCTKFV 71 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg-------~i~vWd~~~~~~----------~~~~~~~h~~~V~~~~~s 71 (732)
++.....-.-..||++++|+|||++||+|+.|. .|++|++..... ...+ .+|...|.+++++
T Consensus 4 m~~~~~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 4 MKFVTASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDAS 82 (365)
T ss_dssp CCCCEEEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEE
T ss_pred ccceeeecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeC
Confidence 344433333456999999999999999997643 599999875431 1223 6788899999886
Q ss_pred cCCCCCEEEEE-----------ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEE--EEeCC
Q 004739 72 PETSDELVVSG-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASED 138 (732)
Q Consensus 72 ~~~~g~~l~s~-----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~--s~s~d 138 (732)
++ .+++| +.|+.+++|++......... ...........+...+.+++|+|++ ++++ +++.|
T Consensus 83 ~~----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d 156 (365)
T 4h5i_A 83 KG----IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF-LTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVP 156 (365)
T ss_dssp TT----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE-EEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSS
T ss_pred CC----EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE-eeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCC
Confidence 54 55554 45778999998764322100 0000011122345568999999966 6654 44578
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
++|++||+.+++.. ..+ .|...|.+++|+|+ +++|++++.+ .+++|+..+++
T Consensus 157 ~~i~iwd~~~~~~~--------------~~~------------~~~~~V~~v~fspd-g~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 157 AIMRIIDPSDLTEK--------------FEI------------ETRGEVKDLHFSTD-GKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp CEEEEEETTTTEEE--------------EEE------------ECSSCCCEEEECTT-SSEEEEECSS-CEEEEETTTCC
T ss_pred CEEEEeECCCCcEE--------------EEe------------CCCCceEEEEEccC-CceEEeccce-eEEEEEeccCc
Confidence 99999999887521 111 13447999999999 7899998754 56777776654
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC----eEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg----~v~iwd~~~ 279 (732)
.+.... ..+|.. .|.+++|+|+++++++++.|+ .+++|++..
T Consensus 209 ~~~~~~------------------~~~~~~-~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~ 254 (365)
T 4h5i_A 209 CIARKT------------------DFDKNW-SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS 254 (365)
T ss_dssp EEEEEC------------------CCCTTE-EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred ceeeee------------------cCCCCC-CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence 322110 033444 599999999999999999876 466666554
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=306.27 Aligned_cols=230 Identities=13% Similarity=0.191 Sum_probs=177.0
Q ss_pred hccccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEc------------cCCCcCeEEEEEecCC
Q 004739 8 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE------------TGHSANVFCTKFVPET 74 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~------------~~h~~~V~~~~~s~~~ 74 (732)
..+....+++|.++|++++|+| ++++||+|+.||.|+|||+.+++....+. .+|...|.+++|+|+.
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 3456778889999999999999 99999999999999999999876655442 2599999999999953
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCC
Q 004739 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSC 152 (732)
Q Consensus 75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~ 152 (732)
+.+|++++.|+.|++||+.+.. ++..+ .+...+.++.++|.+. .++++++.|+.|++||+++++..
T Consensus 112 -~~~l~s~~~d~~i~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 179 (408)
T 4a11_B 112 -TGMFTSSSFDKTLKVWDTNTLQ----------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS 179 (408)
T ss_dssp -TTCEEEEETTSEEEEEETTTTE----------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred -CcEEEEEeCCCeEEEeeCCCCc----------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence 5899999999999999998642 23333 3778899999998542 49999999999999999887632
Q ss_pred CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC-CcccccCCCCCC
Q 004739 153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPP 231 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~ 231 (732)
.....|...|.+++|+|++..+|++|+.||.|++||+++... +..+.......
T Consensus 180 -------------------------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 233 (408)
T 4a11_B 180 -------------------------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK- 233 (408)
T ss_dssp -------------------------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS-
T ss_pred -------------------------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc-
Confidence 122346678999999999555799999999999999987652 22221100000
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
.........+|.. .|++++|+|++++|++++.||.|++||+.++
T Consensus 234 ----~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 234 ----SQAVESANTAHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp ----CCCTTTSSCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ----ceeeccccccccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 0000000123444 6999999999999999999999999999884
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.2e-35 Score=316.10 Aligned_cols=229 Identities=19% Similarity=0.340 Sum_probs=177.2
Q ss_pred ccEeeeccCCce-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 11 QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 11 ~~~~l~~h~~~V-~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
....+.+|...| .++.+ ++++|++|+.||+|++||+.+++.+..+ .+|.+.|.+++|+|+ .+|++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~---~~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG---GILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST---TEEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC---CEEEEEeCCCCEE
Confidence 456899999885 66666 5679999999999999999999999999 799999999999998 4999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+||++++ .++..+.+|...|.+++|++ .++.++++++.||.|++||+++............. .....
T Consensus 187 vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~ 254 (464)
T 3v7d_B 187 VWDIKKG----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--PLVFH 254 (464)
T ss_dssp EEETTTT----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS--SEEES
T ss_pred EEECCCC----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc--ceEee
Confidence 9999864 23678889999999999996 24589999999999999999987644222111111 01111
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
........+....+|...+.++. ++ +.++++|+.|+.|++||+++.+.+..+ .+|..
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~~ 311 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVS--GH-GNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD 311 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEE--EE-TTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred ccCCCeEEEEEccCccceEEEEc--CC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCCC
Confidence 11111112233456677787774 44 679999999999999999987654433 44555
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
.|++++|+|++++|++++.||.|++||+.+++
T Consensus 312 -~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 312 -RIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp -CEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred -CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 59999999999999999999999999998843
No 51
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=301.01 Aligned_cols=207 Identities=17% Similarity=0.220 Sum_probs=171.8
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE---ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~---~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
..|..+|++++|+|++ .|++|+.||+|+|||+.+++.+..+ ..+|.+.|++++|+|+ |++|++|+.|++|++||
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEE
Confidence 3467889999999985 6889999999999999988755433 2489999999999999 59999999999999999
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
+.++ .++..+.+|...|++++|+|++..+|++++.|++|++||+++++...
T Consensus 156 ~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~------------------- 206 (344)
T 4gqb_B 156 LAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS------------------- 206 (344)
T ss_dssp TTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-------------------
T ss_pred CCCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee-------------------
Confidence 9864 34788999999999999999887899999999999999999876320
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
......+...+.+++|+|+++++|++|+.||.|++||+++++.+..+ .+|.. .|+
T Consensus 207 ----~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v~ 261 (344)
T 4gqb_B 207 ----QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CVT 261 (344)
T ss_dssp ----ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CEE
T ss_pred ----eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CEE
Confidence 11112334478999999987889999999999999999988765544 55665 599
Q ss_pred EEEEcCCC-CEEEEEecCCeEEEEECCC
Q 004739 253 HVTFSPNG-EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 253 ~l~~sp~g-~~l~~~~~dg~v~iwd~~~ 279 (732)
+++|+|++ ++|++++.|++|+|||+.+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 99999998 5789999999999998766
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.8e-35 Score=341.78 Aligned_cols=470 Identities=13% Similarity=0.089 Sum_probs=330.1
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
.+.+.++.+.+|..+|++++|+|++++|++|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+ +.+|++++.||
T Consensus 43 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg 119 (814)
T 3mkq_A 43 ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT--KPYVLSGSDDL 119 (814)
T ss_dssp TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS--SSEEEEEETTS
T ss_pred CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC--CCEEEEEcCCC
Confidence 456778899999999999999999999999999999999999999999998 799999999999999 58999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.|++||+.+.. .....+.+|...|.+++|+|.+++.|++++.||.|++||+.++...
T Consensus 120 ~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~-------------- 176 (814)
T 3mkq_A 120 TVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-------------- 176 (814)
T ss_dssp EEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS--------------
T ss_pred EEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce--------------
Confidence 99999998632 2356788899999999999955589999999999999999776532
Q ss_pred eeccCCccccccCCCCCccceEEEEecC--CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
......+...+.+++|+| + +.+|++++.||.|++||+++.+.+..+ .
T Consensus 177 ----------~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~--------------------~ 225 (814)
T 3mkq_A 177 ----------FTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATL--------------------E 225 (814)
T ss_dssp ----------EEEECCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEE--------------------E
T ss_pred ----------eEEecCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEE--------------------c
Confidence 000112335788999999 6 789999999999999999877544333 3
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCc---------------cCCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL---------------ELQP 309 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 309 (732)
+|.. .|++++|+|++++|++++.||.|++||+.+++.......+...+..++|+|..... ....
T Consensus 226 ~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 226 GHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp CCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 3444 59999999999999999999999999999877666666666677777777764422 2233
Q ss_pred CCCccCCCccccccccccCcchhhH---------HHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHH
Q 004739 310 PIHDFLQTNIRVRGEVATGLGKCRM---------LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRA 380 (732)
Q Consensus 310 ~~~~~~~~g~~~~~~~~~~~d~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 380 (732)
..+.++|+|..++ ++..+.... .+............. .+..+...
T Consensus 305 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-------------- 358 (814)
T 3mkq_A 305 PTLSLDPVGKLVW---SGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTK---------ELGSVDVF-------------- 358 (814)
T ss_dssp CCEEECSSSEEEE---ECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCE---------EECCCSSC--------------
T ss_pred ceeEECCCCCEEE---ECcccccceeeeeeecccccccccCccceeeee---------cCCCCccC--------------
Confidence 4556677777766 322221100 000000000000000 00000000
Q ss_pred HHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHH
Q 004739 381 ALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAA 460 (732)
Q Consensus 381 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~ 460 (732)
+..++++|+ ++.++++
T Consensus 359 -----------------------------------------------------~~~~~~spd-----------g~~la~~ 374 (814)
T 3mkq_A 359 -----------------------------------------------------PQSLAHSPN-----------GRFVTVV 374 (814)
T ss_dssp -----------------------------------------------------CSEEEECTT-----------SSEEEEE
T ss_pred -----------------------------------------------------CceeEECCC-----------CCEEEEe
Confidence 112233443 2233333
Q ss_pred HhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCC
Q 004739 461 ETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGS 540 (732)
Q Consensus 461 ~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~ 540 (732)
+ ++.+.+|+.........|. -..++|+||+ +.+++++.++.+++|.
T Consensus 375 ~-~~~~~i~~~~~~~~~~~~~-----------i~~~~~spdg------------------~~la~~~~~g~v~l~~---- 420 (814)
T 3mkq_A 375 G-DGEYVIYTALAWRNKAFGK-----------CQDFVWGPDS------------------NSYALIDETGQIKYYK---- 420 (814)
T ss_dssp E-TTEEEEEETTTTEEEEEEE-----------CSEEEECTTS------------------SCEEEECTTCCEEEEE----
T ss_pred c-CCEEEEEECccccccCCCc-----------eEEEEEeCCC------------------CeEEEEeCCCcEEEEE----
Confidence 3 4444444411100000011 1157788888 8999999999999995
Q ss_pred cceeeccCCCCccccccCCCC---CCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCCEEEEe---
Q 004739 541 LNVRIHRRGDSARETVDANGS---SGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASG--- 614 (732)
Q Consensus 541 ~~~~~~~~~~~v~~~~~s~d~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~lasg--- 614 (732)
.+.+|...+.+++|+||+ +.|++++.++...+|+..+ .+.+..+.+|.. .+. |||||++||++
T Consensus 421 ---~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~---~v~----~s~dg~~la~~~~~ 489 (814)
T 3mkq_A 421 ---NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN-GTLVRRIDVNAK---DVI----WSDNGELVMIVNTN 489 (814)
T ss_dssp ---TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT-CCEEEEESSCEE---EEE----ECTTSSEEEEEECC
T ss_pred ---CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCc-CcEEEEEecCCC---EEE----EcCCCCEEEEEEcC
Confidence 356777889999999999 7888887677777799877 778889998875 254 79999999999
Q ss_pred ---cCCCcEEEEE-----------------------------------------------cCccc-------EEEEEecC
Q 004739 615 ---SDDGRWFIWE-----------------------------------------------KQTGR-------LIKMLLGD 637 (732)
Q Consensus 615 ---s~Dg~i~iWd-----------------------------------------------~~tg~-------~~~~l~gH 637 (732)
+.+..+.+|. ...++ ....+...
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~ 569 (814)
T 3mkq_A 490 SNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHY 569 (814)
T ss_dssp CSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEEC
T ss_pred cccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEEC
Confidence 6555544443 10111 11222334
Q ss_pred cccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004739 638 EAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 638 ~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~ 669 (732)
...+..+.|.+++..|+....++.+++|++..
T Consensus 570 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 570 TKEMYLLGYLARDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp SSCCEEEEEEGGGTEEEEECTTCCEEEEECCH
T ss_pred CccEEEEEEEecCCEEEEEcCCCCEEEEEECc
Confidence 55666777888888888888889999998653
No 53
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4e-36 Score=312.98 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=126.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC------CCcEEEEEcCCCC
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFS 97 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~------dg~i~vwd~~~~~ 97 (732)
.+.+.+++.++. ++.+.....|++.... . ..|+..|++++|+|+ |.+|++|+. |+.|++|+..+..
T Consensus 10 g~d~g~~~~~~~-~~g~~~~~~w~~p~~~----p-~~H~~~V~~v~fSpD--G~~las~s~d~~~~wd~~v~~~~~~~~~ 81 (357)
T 4g56_B 10 GVDLGTENLYFQ-SNGSSKGSAWGRPVTA----P-ACMEVQIGAVRYRRD--GALLLAASSLSSRTWGGSIWVFKDPEGA 81 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSS--SCEEEEEECSSSSSCCEEEEEESSCC--
T ss_pred CCCCCccceEEe-cCCCccccccCCCCCC----c-ccccCCEEEEEECCC--CCEEEEEcCCCCccccCeEEEEECCCCC
Confidence 445555555544 4456778999875432 2 479999999999999 699999997 7789999887543
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
... .......+|...|++++|+|++ .+++++.||.|++||+.+++..... .
T Consensus 82 ~~~------~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~---------------------~ 132 (357)
T 4g56_B 82 PNE------SLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLVN---------------------K 132 (357)
T ss_dssp -CG------GGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CCC---------------------C
T ss_pred cce------eEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEEE---------------------e
Confidence 221 2234456788999999999954 4567889999999999887632100 0
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
....+|...|++++|+|+ +++|++|+.|+.|++||+++.+.+..+ .+|.. .|++++|+
T Consensus 133 ~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------~~h~~-~v~~v~~s 190 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSY--------------------NAHSS-EVNCVAAC 190 (357)
T ss_dssp EEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEEEC
T ss_pred eccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------------------cCCCC-CEEEEEEc
Confidence 112356779999999999 789999999999999999987654433 45555 59999999
Q ss_pred CCCC-EEEEEecCCeEEEEECCCC
Q 004739 258 PNGE-EVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 258 p~g~-~l~~~~~dg~v~iwd~~~~ 280 (732)
|++. ++++++.||.|++||++++
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~ 214 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKP 214 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSS
T ss_pred cCCCceeeeeccCCceEEEECCCC
Confidence 9885 7889999999999998873
No 54
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-34 Score=306.20 Aligned_cols=200 Identities=19% Similarity=0.292 Sum_probs=158.3
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
.++.|+||++ ++||+|. |++|+|||+.+++++..+. .+|...|++++|+|+ |++|++|+.||+|+|||+.++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~--- 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ--- 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence 4678999975 5787775 8999999999998877652 467888999999999 599999999999999999864
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
.++..+.+|...+.++.+++ .++++|+.|+.+++||....... +..
T Consensus 180 -------~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~ 225 (420)
T 4gga_A 180 -------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------------------VAT 225 (420)
T ss_dssp -------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred -------cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence 33788899999999998854 79999999999999998775421 122
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
..+|...+..+.++|+ +.++++++.|+.|++||..+.+..... +... ..|.. .|.+++|+|.
T Consensus 226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~---------~~~~-------~~~~~-~V~~~~~~p~ 287 (420)
T 4gga_A 226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVP---------LQTF-------TQHQG-AVKAVAWCPW 287 (420)
T ss_dssp EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCC---------SEEE-------CCCSS-CEEEEEECTT
T ss_pred ecccccceeeeeecCC-CCeeeeeeccccceEEeecccccccee---------eeee-------cccCC-ceeeeeeCCC
Confidence 2356668999999999 789999999999999999876532211 0111 23444 5999999996
Q ss_pred CC-EEEEE--ecCCeEEEEECCC
Q 004739 260 GE-EVLLS--YSGEHVYLMDVNH 279 (732)
Q Consensus 260 g~-~l~~~--~~dg~v~iwd~~~ 279 (732)
+. .++++ +.|+.|++||+.+
T Consensus 288 ~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 288 QSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp CTTEEEEEECTTTCEEEEEETTT
T ss_pred cccEEEEEeecCCCEEEEEeCCc
Confidence 64 55554 4699999999887
No 55
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-35 Score=305.79 Aligned_cols=173 Identities=15% Similarity=0.214 Sum_probs=139.6
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 131 (732)
+....+ .+|...|++++|+|+ +.+|+||+.|++|++||..+.. ....+..|...|.+++|+|++ .+
T Consensus 55 ~~~~~l-~gH~~~V~~~~~s~d--~~~l~s~s~Dg~v~vWd~~~~~----------~~~~~~~~~~~v~~~~~sp~g-~~ 120 (354)
T 2pbi_B 55 KTRRTL-KGHGNKVLCMDWCKD--KRRIVSSSQDGKVIVWDSFTTN----------KEHAVTMPCTWVMACAYAPSG-CA 120 (354)
T ss_dssp CEEEEE-ECCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTCC----------EEEEEECSSSCCCEEEECTTS-SE
T ss_pred EEEEEe-cCCCCeEEEEEECCC--CCEEEEEeCCCeEEEEECCCCC----------cceEEecCCCCEEEEEECCCC-CE
Confidence 455666 799999999999999 5999999999999999987642 256677788999999999955 89
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004739 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 211 (732)
Q Consensus 132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i 211 (732)
|++++.|+.+++|++........ .........|...|.++.|+|+ +..|++++.|++|++
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNENM-------------------AAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCAL 180 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCCS-------------------GGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEE
T ss_pred EEEeeCCCCEEEEEEeccccccc-------------------cccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEE
Confidence 99999999999999876532100 0011112246678999999998 789999999999999
Q ss_pred EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC--CCCEEEEEecCCeEEEEECCC
Q 004739 212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~~ 279 (732)
||+++++.+..+ .+|.. .|.+++|+| +|++|++|+.||.|++||+++
T Consensus 181 wd~~~~~~~~~~--------------------~~h~~-~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 181 WDVESGQLLQSF--------------------HGHGA-DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp EETTTCCEEEEE--------------------ECCSS-CEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred EeCCCCeEEEEE--------------------cCCCC-CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 999987655443 45555 599999988 578999999999999999877
No 56
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=308.69 Aligned_cols=176 Identities=20% Similarity=0.232 Sum_probs=138.5
Q ss_pred CeeEEEEccCCCc-CeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004739 51 RKLLHSIETGHSA-NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129 (732)
Q Consensus 51 ~~~~~~~~~~h~~-~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 129 (732)
.+++.++ .+|.. .|.+++|+|+ |++|++|+.|++|+|||+......+ ......+|...|.+++|+|++
T Consensus 5 ~~~~~~~-~~h~~~~v~~l~~sp~--g~~las~~~D~~i~iw~~~~~~~~~-------~~~~~~~h~~~v~~~~~sp~g- 73 (345)
T 3fm0_A 5 LVLLGRV-PAHPDSRCWFLAWNPA--GTLLASCGGDRRIRIWGTEGDSWIC-------KSVLSEGHQRTVRKVAWSPCG- 73 (345)
T ss_dssp EEEEEEE-CCSTTSCEEEEEECTT--SSCEEEEETTSCEEEEEEETTEEEE-------EEEECSSCSSCEEEEEECTTS-
T ss_pred EEEeeee-cCCCCCcEEEEEECCC--CCEEEEEcCCCeEEEEEcCCCccee-------eeeeccccCCcEEEEEECCCC-
Confidence 3456677 68887 9999999999 5999999999999999998532110 012336899999999999954
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004739 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 209 (732)
Q Consensus 130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v 209 (732)
++|++++.|+.|++||+..... ..+....+|...|.+++|+|+ +++|++|+.|+.|
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~-----------------------~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v 129 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDF-----------------------ECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSV 129 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-E-----------------------EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred CEEEEEECCCcEEEEEccCCCe-----------------------EEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeE
Confidence 8999999999999999876531 012233467779999999998 8899999999999
Q ss_pred EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
++||++...... ++..+ .+|.. .|.+++|+|++++|++++.|+.|++||+.+
T Consensus 130 ~iwd~~~~~~~~----------~~~~~-------~~h~~-~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~ 181 (345)
T 3fm0_A 130 WVWEVDEEDEYE----------CVSVL-------NSHTQ-DVKHVVWHPSQELLASASYDDTVKLYREEE 181 (345)
T ss_dssp EEEEECTTSCEE----------EEEEE-------CCCCS-CEEEEEECSSSSCEEEEETTSCEEEEEEET
T ss_pred EEEECCCCCCeE----------EEEEe-------cCcCC-CeEEEEECCCCCEEEEEeCCCcEEEEEecC
Confidence 999998754321 11111 34554 599999999999999999999999998765
No 57
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=312.18 Aligned_cols=230 Identities=12% Similarity=0.089 Sum_probs=168.7
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
...++.|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+ .+|...|.+++|+|+ +++|++++.|++|+
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAY 80 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEE
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEE
Confidence 3455667899999999999999999999999999999988 677777 799999999999999 58999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+||+.+... ..+...+.+|...|.+++|+|+ +++|++++.|+.|++||+++++...
T Consensus 81 vwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~---------------- 136 (377)
T 3dwl_C 81 VYEKRPDGT-------WKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQENDWW---------------- 136 (377)
T ss_dssp EC------C-------CCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----CC----------------
T ss_pred EEEcCCCCc-------eeeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCcccce----------------
Confidence 999987431 1236677889999999999995 4899999999999999998875210
Q ss_pred cCCccccccCCCC-CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 170 RCGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 170 ~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
....... |...|.+++|+|+ +.+|++++.|+.|++||++............ ............. .+|..
T Consensus 137 ------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~ 206 (377)
T 3dwl_C 137 ------VSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASV-WGSRLPFNTVCAE--YPSGG 206 (377)
T ss_dssp ------CCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCS-SCSCCCEEEEEEC--CCCSS
T ss_pred ------eeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccc-cccccchhhhhhc--ccCCc
Confidence 0111122 6679999999998 7899999999999999997543221110000 0000000000000 13444
Q ss_pred ccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.|++++|+|++++|++++.||.|++||+.+
T Consensus 207 -~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 207 -WVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp -SEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred -eEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 699999999999999999999999999987
No 58
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=290.03 Aligned_cols=211 Identities=19% Similarity=0.284 Sum_probs=161.0
Q ss_pred cccEeeecc--CC--ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc-cCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 10 SQERELEGH--QG--CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 10 ~~~~~l~~h--~~--~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
.+.+.|.+. .+ .+++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|++++|+|+ +++|++|+.
T Consensus 12 ~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~ 87 (318)
T 4ggc_A 12 LPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTS 87 (318)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEET
T ss_pred CCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEEC
Confidence 345566542 22 35789999986 777764 8999999999999887762 468888999999999 599999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
||+|++||++++ +++..+.+|...+.++.+.+ .++++++.++.+++|+.......
T Consensus 88 Dg~v~iw~~~~~----------~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~------------ 142 (318)
T 4ggc_A 88 SAEVQLWDVQQQ----------KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------------ 142 (318)
T ss_dssp TSEEEEEETTTT----------EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------------
T ss_pred CCcEEEeecCCc----------eeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCcee------------
Confidence 999999999874 33788889999988877653 78999999999999998776521
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
+....+|...+..+.+.++ +++|++++.|+.|++||+++++...... ... .
T Consensus 143 ------------~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~-------~ 193 (318)
T 4ggc_A 143 ------------VATLSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPL---------QTF-------T 193 (318)
T ss_dssp ------------EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCS---------EEE-------C
T ss_pred ------------EEEEcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccce---------eee-------c
Confidence 1222346668899999998 7899999999999999998765432210 000 2
Q ss_pred CCccccEEEEEEcCCCCEE---EEEecCCeEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNGEEV---LLSYSGEHVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l---~~~~~dg~v~iwd~~~ 279 (732)
.+.. .|..++++|++..+ ++++.++.|++||...
T Consensus 194 ~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 194 QHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp CCCS-CEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred ccCC-ceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence 2333 59999999976533 3445689999999776
No 59
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-34 Score=301.97 Aligned_cols=201 Identities=18% Similarity=0.258 Sum_probs=162.1
Q ss_pred eccCCcee--EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 16 EGHQGCVN--AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 16 ~~h~~~V~--~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
.+|...+. +++|++ ..+++++.|+.|++||+.+++....+...|...|.+++|+|+ +.+|++|+.||.|++||+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEEC
Confidence 36766544 466664 568888899999999999999888885568999999999998 589999999999999999
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.+. ..+..+.+|...|.+++|++ ++|++++.||.|++||++.....
T Consensus 164 ~~~----------~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~--------------------- 209 (401)
T 4aez_A 164 ESQ----------TKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQ--------------------- 209 (401)
T ss_dssp TTC----------CEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE---------------------
T ss_pred cCC----------eEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcce---------------------
Confidence 864 33678889999999999953 79999999999999999854321
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
+.....|...|.+++|+|+ +.+|++|+.|+.|++||+++.+.+..+ .+|.. .|.+
T Consensus 210 ---~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~--------------------~~~~~-~v~~ 264 (401)
T 4aez_A 210 ---IGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTK--------------------TNHNA-AVKA 264 (401)
T ss_dssp ---EEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEE--------------------CCCSS-CCCE
T ss_pred ---eeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEe--------------------cCCcc-eEEE
Confidence 1122346678999999998 889999999999999999986544332 33444 5999
Q ss_pred EEEcCCCC-EEEEEe--cCCeEEEEECCC
Q 004739 254 VTFSPNGE-EVLLSY--SGEHVYLMDVNH 279 (732)
Q Consensus 254 l~~sp~g~-~l~~~~--~dg~v~iwd~~~ 279 (732)
++|+|++. ++++++ .|+.|++||+.+
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 99999775 555554 699999999887
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=317.21 Aligned_cols=316 Identities=12% Similarity=0.125 Sum_probs=239.6
Q ss_pred CCcCeEEEEEecCCCCCEEEEE----------ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004739 61 HSANVFCTKFVPETSDELVVSG----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130 (732)
Q Consensus 61 h~~~V~~~~~s~~~~g~~l~s~----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 130 (732)
+...|.+++|+|++ ..+|+++ +.|+.|++||+.+.... .++..+ .|...|++++|+|++ .
T Consensus 11 ~~~~v~~~~~sp~g-~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-------~~~~~~-~~~~~v~~~~~s~~~-~ 80 (416)
T 2pm9_A 11 EFSRTATFAWSHDK-IPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-------KPIASL-QVDSKFNDLDWSHNN-K 80 (416)
T ss_dssp EEEESCBCCBCSSS-SCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-------SCSCCC-CCSSCEEEEEECSSS-S
T ss_pred hhhhcceEeeCCCC-CCEEEEEecCcccccccCCCCeEEEEEccCCCCC-------cEEEEE-ecCCceEEEEECCCC-C
Confidence 33568899999994 2499999 88999999999864321 123333 588999999999954 8
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
+|++++.||.|++||+...... ...+.....|...|.+++|+|+++.+|++++.|+.|+
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNA---------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSC---------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred eEEEEccCCeEEEeeccccccc---------------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 9999999999999999873210 0012233457779999999998678999999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC-CCEEEEEecCCeEEEEECCCCCCcceeeec
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGGRAMRYTV 289 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 289 (732)
+||+++.+...... ..+..... .+|.. .|++++|+|+ +.+|++++.||.|++||+.+++....+..
T Consensus 140 iwd~~~~~~~~~~~---------~~~~~~~~--~~~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~- 206 (416)
T 2pm9_A 140 IWDMNKCTESPSNY---------TPLTPGQS--MSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY- 206 (416)
T ss_dssp BCBTTTTSSCTTTC---------CCBCCCCS--CCSSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-
T ss_pred EEECCCCccccccc---------cccccccc--cCCCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-
Confidence 99998765211000 00000000 23444 5999999999 78999999999999999987321100000
Q ss_pred CCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC
Q 004739 290 GDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP 369 (732)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 369 (732)
T Consensus 207 -------------------------------------------------------------------------------- 206 (416)
T 2pm9_A 207 -------------------------------------------------------------------------------- 206 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHH
Q 004739 370 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 449 (732)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 449 (732)
+
T Consensus 207 -----------------------------------------------------------------------~-------- 207 (416)
T 2pm9_A 207 -----------------------------------------------------------------------T-------- 207 (416)
T ss_dssp -----------------------------------------------------------------------C--------
T ss_pred -----------------------------------------------------------------------c--------
Confidence 0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCC
Q 004739 450 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEG 529 (732)
Q Consensus 450 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d 529 (732)
T Consensus 208 -------------------------------------------------------------------------------- 207 (416)
T 2pm9_A 208 -------------------------------------------------------------------------------- 207 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCcceeeccCCCCccccccCCCC-CCCCCCCCCC---CCCccccccccccceeEe-eeccccceeeecccc
Q 004739 530 RDVEANFLHGSLNVRIHRRGDSARETVDANGS-SGSPSSSSQN---DRIPYQPETVIDMKQRYV-GHCNVGTDIKQASFL 604 (732)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~---~~~~~~~~~~~~~~~~~~-gh~~~~~~i~~~~f~ 604 (732)
....+|...|.+++|+|++ .+|++++.++ ...+|+.....+..+.+. +|...++++. |
T Consensus 208 -------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~----~ 270 (416)
T 2pm9_A 208 -------------SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD----W 270 (416)
T ss_dssp -------------CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE----E
T ss_pred -------------ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE----e
Confidence 0001234567789999997 4678877666 777899887556788888 9998866665 6
Q ss_pred cC-CCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCC-CeEEEecCCCcEEEEcCCCCCCcccc
Q 004739 605 GQ-RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFD-CVVATSGIDNTIKIWTPSASVPSIVS 676 (732)
Q Consensus 605 s~-dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~-~~l~S~s~D~~i~vW~~~~~~~~~~~ 676 (732)
+| ++++|++|+.||+|++||+.+++++..+.+|...|++++|+|++ .+|++++.|++|+||++.+.......
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 99 99999999999999999999999999999999999999999999 79999999999999999988765543
No 61
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=7.4e-34 Score=294.71 Aligned_cols=206 Identities=16% Similarity=0.147 Sum_probs=168.4
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCC-EEEEEECC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~d 85 (732)
+.+....+|.+.|++++|+|++++|++|+.|+.|+|||+.+++ ....+ .+|...|.+++|+|+ ++ +|++|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~d 78 (342)
T 1yfq_A 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQ 78 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETT
T ss_pred cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCC
Confidence 3445567899999999999999999999999999999998876 33444 489999999999999 58 99999999
Q ss_pred CcEEEEEc-CCCCCCCCCCCCCCCceeecc--ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC---------CCCCC
Q 004739 86 AEVRLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCP 153 (732)
Q Consensus 86 g~i~vwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~---------~~~~~ 153 (732)
|.|++||+ .... ...+.+ |...|.+++|+| +++|++++.|+.|++||+++ .+..
T Consensus 79 g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~- 144 (342)
T 1yfq_A 79 GEILKVDLIGSPS-----------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS- 144 (342)
T ss_dssp SCEEEECSSSSSS-----------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-
T ss_pred CeEEEEEeccCCc-----------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee-
Confidence 99999999 7532 467778 999999999999 48999999999999999876 3311
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCc
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPC 232 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~ 232 (732)
.... +...+.+++|+|+ + +++++.|+.|++||+++ .......
T Consensus 145 ------------------------~~~~-~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~~--------- 187 (342)
T 1yfq_A 145 ------------------------NNTK-VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGTI--------- 187 (342)
T ss_dssp ------------------------SSSS-SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCEE---------
T ss_pred ------------------------eEEe-eCCceEEEEecCC-c--EEEEeCCCeEEEEECCcccccccee---------
Confidence 1111 5568999999987 3 99999999999999987 4321110
Q ss_pred cccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCC
Q 004739 233 VNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~ 279 (732)
. ...+.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 188 ---~------~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 188 ---E------ESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp ---E------ECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred ---e------ecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence 0 022223 599999999 999999999999999999887
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-35 Score=309.61 Aligned_cols=207 Identities=16% Similarity=0.189 Sum_probs=149.0
Q ss_pred cccEeeeccCCceeEEEEcCCCCE----EEEEeCCCcEEEEeCCCCee----EEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~----lasg~~dg~i~vWd~~~~~~----~~~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
.+...+.+|..+|..+.+..+.+. +.-.. +....+|+....+. +... .+|...|.+++|+|+ |++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~fspd--g~~la~ 81 (393)
T 1erj_A 6 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQT-NDYYILYNPALPREIDVELHKS-LDHTSVVCCVKFSND--GEYLAT 81 (393)
T ss_dssp CCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEEC-SSCEEEECTTSCCCEEEEEEEE-EECSSCCCEEEECTT--SSEEEE
T ss_pred CCccccccccccCCCccccCChhHCcHhHhccC-CceEEEECCCCCcccCceeEEe-cCCCCEEEEEEECCC--CCEEEE
Confidence 344455667777765444333322 22233 33455787654432 1222 269999999999999 589998
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeecc------------------ccCceeEEEEecCCCcEEEEEeCCCcEEE
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQ 143 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~v~~l~~~p~~~~~l~s~s~dg~i~v 143 (732)
|+ ++.+++|++.++.. +..+.. +...|++++|+|++ ++|++|+.|+.|++
T Consensus 82 g~-~~~v~i~~~~~g~~----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l~s~~~d~~i~i 149 (393)
T 1erj_A 82 GC-NKTTQVYRVSDGSL----------VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRI 149 (393)
T ss_dssp EC-BSCEEEEETTTCCE----------EEEECC-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred Ec-CCcEEEEEecCCCE----------EEEecCccccccccccccccccCCCceeEEEEEECCCC-CEEEEEcCCCeEEE
Confidence 76 78999999986432 223322 23359999999955 89999999999999
Q ss_pred EECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004739 144 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 223 (732)
Q Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~ 223 (732)
||+.+++. +....+|...|.+++|+|+ +.+|++++.|++|++||+++++....+
T Consensus 150 wd~~~~~~-------------------------~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 150 WDIENRKI-------------------------VMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp EETTTTEE-------------------------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EECCCCcE-------------------------EEEEccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 99987651 1223457778999999999 789999999999999999876533221
Q ss_pred ccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEECCCC
Q 004739 224 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
. +.. .+.+++|+| ++++|++++.||.|++||+.++
T Consensus 204 --------------------~-~~~-~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~ 239 (393)
T 1erj_A 204 --------------------S-IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239 (393)
T ss_dssp --------------------E-CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTC
T ss_pred --------------------E-cCC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 1 112 489999999 8999999999999999998873
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-34 Score=295.60 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=116.6
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+ .+|...|.+++|+|...+++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3567999999999999999999999999999999998875 45566 79999999999986322589999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
||++++.. .++..+.+|...|++++|+|++ +.+|++++.|+.|++||++.....
T Consensus 86 Wd~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~----------------- 140 (316)
T 3bg1_A 86 WREENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW----------------- 140 (316)
T ss_dssp ECCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------------
T ss_pred EECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------------
Confidence 99986422 2356778899999999999963 578999999999999998765310
Q ss_pred cCCccccccCCCCCccceEEEEecCC
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISST 195 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~ 195 (732)
........|...|.+++|+|+
T Consensus 141 -----~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 141 -----EVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp -----EECCBTTSSSSCBCCCEECCC
T ss_pred -----ceeeeeccccCCcceEEEccc
Confidence 011122345567788888886
No 64
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-33 Score=284.65 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=134.1
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCcEEEEEeC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE 137 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~l~s~s~ 137 (732)
.+|...|.+++|+|+ |++|++|+.|++|+|||+..... .++..+.+|...|++++|+|+ .+++|++|+.
T Consensus 6 ~~h~~~V~~~~~s~~--g~~las~s~D~~v~iw~~~~~~~--------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CSCSSCEEEEEECTT--SSEEEEEETTSCEEEEEBCSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcCceEEEEECCC--CCEEEEEeCCCEEEEEecCCCCc--------EEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 789999999999999 59999999999999999975322 336889999999999999863 3589999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCC
Q 004739 138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~ 216 (732)
|++|++||+++++.. .+.....|...|.+++|+|+. +.+|++++.|+.|++||+++
T Consensus 76 D~~v~iWd~~~~~~~-----------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 76 DGKVMIWKEENGRWS-----------------------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp TTEEEEEEBSSSCBC-----------------------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred CCEEEEEEcCCCceE-----------------------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 999999999876411 111223466789999999973 67999999999999999986
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC-------------CCEEEEEecCCeEEEEECCC
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-------------GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-------------g~~l~~~~~dg~v~iwd~~~ 279 (732)
...... ..+ .+|.. .|++++|+|+ +++|++|+.|+.|++||+.+
T Consensus 133 ~~~~~~-----------~~~-------~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~ 189 (297)
T 2pm7_B 133 NGTTSP-----------III-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (297)
T ss_dssp SSCBCC-----------EEE-------ECCSS-CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred CCceee-----------eee-------ecccC-ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence 532110 000 34544 5999999997 56899999999999998766
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.1e-33 Score=301.51 Aligned_cols=197 Identities=14% Similarity=0.295 Sum_probs=164.3
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
..+|...|++++| ++++|++|+.||+|++||+.+++.+..+ .+|...|.+++| + +++|++|+.||+|++||+.
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEEESS
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEECC
Confidence 3456778998887 7899999999999999999999999988 799999999999 4 4799999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
++ .++..+.+|...|.+++|++ .++++++.||.|++||+.++...
T Consensus 202 ~~----------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~---------------------- 246 (435)
T 1p22_A 202 TG----------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI---------------------- 246 (435)
T ss_dssp SC----------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC----------------------
T ss_pred CC----------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc----------------------
Confidence 64 33678889999999999964 58999999999999999876532
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
.......+|...|.+++|+ +.+|++|+.||.|++||+++.+.+..+ .+|.. .|.++
T Consensus 247 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~-~v~~~ 302 (435)
T 1p22_A 247 TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR-GIACL 302 (435)
T ss_dssp EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS-CEEEE
T ss_pred eeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cCCCC-cEEEE
Confidence 0012233566789999993 679999999999999999987655443 34544 59999
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCC
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.| ++++|++|+.||.|++||+.+
T Consensus 303 ~~--~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 303 QY--RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp EE--ETTEEEEEETTSCEEEEETTT
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCC
Confidence 88 467999999999999999877
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=296.29 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=132.0
Q ss_pred CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee-cc-ccCceeEEEEecC
Q 004739 50 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QC-HTRRVKKLAVEVG 127 (732)
Q Consensus 50 ~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~p~ 127 (732)
..+++..+ .+|...|.+++|+|+ +|++|+.|++|++||+..... .....+ .+ |...|.+++|+|+
T Consensus 3 ~~~~~~~~-~~h~~~v~~~~~s~~----~las~~~D~~i~lw~~~~~~~--------~~~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 3 SINLIKSL-KLYKEKIWSFDFSQG----ILATGSTDRKIKLVSVKYDDF--------TLIDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp CCEEEEEE-ECCSSCEEEEEEETT----EEEEEESSSCEEEEECSSSCC--------EEEEEECTTCCCSCEEEEEECTT
T ss_pred ccccceee-ccCCCceeeeccCCC----EEEEEcCCCEEEEEEecCCCe--------EEEEEEecCCccCCEEEEEECCC
Confidence 45667777 799999999999985 899999999999999986321 123444 34 9999999999995
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004739 128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 207 (732)
Q Consensus 128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg 207 (732)
+ ++|++++.|+.|++||+....... .....+....+|...|.+++|+|+ +++|++|+.|+
T Consensus 70 ~-~~las~s~D~~v~iw~~~~~~~~~------------------~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~ 129 (330)
T 2hes_X 70 T-SLLAAGSFDSTVSIWAKEESADRT------------------FEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDK 129 (330)
T ss_dssp S-SEEEEEETTSCEEEEEC-------------------------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTS
T ss_pred C-CEEEEEeCCCcEEEEEcccCcCcc------------------ccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCC
Confidence 4 899999999999999986532100 000112223467789999999999 78999999999
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|++||++...... .++..+ .+|.. .|++++|+|++++|++++.|++|++||+.+
T Consensus 130 ~v~iwd~~~~~~~~---------~~~~~~-------~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 130 SVWIWETDESGEEY---------ECISVL-------QEHSQ-DVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp CEEEEECCTTCCCC---------EEEEEE-------CCCSS-CEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred EEEEEeccCCCCCe---------EEEEEe-------ccCCC-ceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999995432110 111221 44555 599999999999999999999999998755
No 67
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=300.99 Aligned_cols=233 Identities=15% Similarity=0.262 Sum_probs=166.4
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------eEEEEccCCC------------cCeEEEEEecC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE 73 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----------~~~~~~~~h~------------~~V~~~~~s~~ 73 (732)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+ .+|. ..|++++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence 368999999999999999999999999999999876 46667 6898 88999999998
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCCCCCC-----------------CCCCC------------CCcee-eccccCceeEEE
Q 004739 74 TSDELVVSGAGDAEVRLFNLSRFSGRGL-----------------DDNAI------------TPSAL-YQCHTRRVKKLA 123 (732)
Q Consensus 74 ~~g~~l~s~~~dg~i~vwd~~~~~~~~~-----------------~~~~~------------~~~~~-~~~h~~~v~~l~ 123 (732)
++..+|++++.|++|++||+........ ..... .+... ..+|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 4226999999999999999875221000 00000 00112 367999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE
Q 004739 124 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG 203 (732)
Q Consensus 124 ~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg 203 (732)
|+|+ +++|+++ .|+.|++||+++.... ..++.... .....|...|.+++|+|+++.+|++|
T Consensus 185 ~~~~-~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 185 INSD-YETYLSA-DDLRINLWHLEITDRS-----------FNIVDIKP------ANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp ECTT-SSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECCC------SSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred EcCC-CCEEEEe-CCCeEEEEECCCCCce-----------eeeeeccc------ccccccCcceEEEEECCCCCcEEEEE
Confidence 9995 5889898 7999999999843211 01111110 12335667899999999944899999
Q ss_pred eCCCeEEEEECCCCCC----CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 204 GSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 204 ~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+.||.|++||+++.+. +..+.....+ .....+ .+|. ..|++++|+|+|++|++++. +.|++||+.+
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~-~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFF-------SEII-SSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHT-TCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCc-cccccc-------cccC-ceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 9999999999998764 2222110000 000000 0111 25999999999999999999 9999999986
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=292.55 Aligned_cols=210 Identities=16% Similarity=0.189 Sum_probs=163.1
Q ss_pred hhccccEeeeccCCceeEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CeeE-EEEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~d---g~~lasg~~dg~i~vWd~~~-~~~~-~~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
..++.++.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+ .+|...|.+++|+|+ +++|++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s 103 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKVFT 103 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEEEE
Confidence 456778889999999999999999 69999999999999999997 5555 445 789999999999998 589999
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE--ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
++.||.|++||+.+.. ...+.+|...|++++| +| ++++|++++.||.|++||+++++...
T Consensus 104 ~~~dg~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~------ 165 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQ-----------AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMM------ 165 (368)
T ss_dssp EETTSEEEEEETTTTE-----------EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSE------
T ss_pred EcCCCcEEEEEcCCCC-----------ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEE------
Confidence 9999999999998642 3446779999999999 77 44889999999999999998876320
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
.+. ....+.++.+.+ ..+++++.++.+++||++........ .
T Consensus 166 ------~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~------------~--- 207 (368)
T 3mmy_A 166 ------VLQ--------------LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRR------------I--- 207 (368)
T ss_dssp ------EEE--------------CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEE------------C---
T ss_pred ------EEe--------------cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhh------------c---
Confidence 000 111566666664 37888999999999999865321111 0
Q ss_pred ccccCCCccccEEEEEEcCCCCE----EEEEecCCeEEEEECCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~----l~~~~~dg~v~iwd~~~ 279 (732)
.......+..+.+.+++.. +++++.||.|++|++..
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 208 ----ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ----CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ----cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 0011113556666655544 99999999999999987
No 69
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.9e-33 Score=289.66 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=181.1
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +.+..+ .+|...|++++|+|..++++|++++.||
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 34678899999999999999999999999999999999876 455666 6899999999999931148999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
.|++||+........ .....++..+.+|...|.+++|+|+. +++|++++.||.|++||+++++.......
T Consensus 82 ~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------- 152 (351)
T 3f3f_A 82 TVKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-------- 152 (351)
T ss_dssp CEEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE--------
T ss_pred eEEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc--------
Confidence 999999987532210 11123467788999999999999952 58999999999999999998774421110
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCC--CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.............+...+.++.|+|+ ++.+|++++.|+.+.+|+....+... +..+
T Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~------- 210 (351)
T 3f3f_A 153 ----TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-----------AAKL------- 210 (351)
T ss_dssp ----EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE-----------EEEC-------
T ss_pred ----cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee-----------eeec-------
Confidence 00000011122356678999999996 46799999999999888876654210 1111
Q ss_pred CCCccccEEEEEEcCCC----CEEEEEecCCeEEEEECCCC
Q 004739 244 HGRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g----~~l~~~~~dg~v~iwd~~~~ 280 (732)
.+|.. .|++++|+|++ ++|++++.||.|++||+.++
T Consensus 211 ~~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 211 PGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 34554 69999999998 89999999999999999873
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-35 Score=312.18 Aligned_cols=324 Identities=11% Similarity=0.070 Sum_probs=231.7
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEEEEEc----CCCCCCCCCCCCCCCceee---
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNL----SRFSGRGLDDNAITPSALY--- 112 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~----~~~~~~~~~~~~~~~~~~~--- 112 (732)
..+.+|++......... ..|...|++++|+|+ +. +|++|+.|+.|++|++ .++..... ......+
T Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~ 97 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKE-IVKLDNIVSSTWNPL--DESILAYGEKNSVARLARIVETDQEGKKYWK----LTIIAELRHP 97 (425)
T ss_dssp ---------CCCEECEE-EEECSCCSEEEECSS--CTTEEEEEETBTEEEEEEEEEC------CEE----EEEEEEEECC
T ss_pred cccccccchhhhhheee-eeccCceEEEEECCC--CCcEEEEecCCceEEEEEEecccCCcccccc----cccccccccc
Confidence 44678888766555444 467799999999999 47 9999999999999999 65431000 0001222
Q ss_pred -------ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCcc
Q 004739 113 -------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 185 (732)
Q Consensus 113 -------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (732)
.+|...|++++|+|+ +++|++++.||.|++||. +++ .+.....|..
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~~-~~~-------------------------~~~~~~~~~~ 150 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSHD-GNSIVTGVENGELRLWNK-TGA-------------------------LLNVLNFHRA 150 (425)
T ss_dssp CCCC------CBCEEEEEECTT-SSEEEEEETTSCEEEEET-TSC-------------------------EEEEECCCCS
T ss_pred ccccccccCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeC-CCC-------------------------eeeeccCCCc
Confidence 226889999999995 589999999999999993 332 1112234667
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 265 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~ 265 (732)
.|.+++|+|+ +.+|++++.|+.|++||+.+.+.+..+.........+... . .......+.+++|+|++ .+++
T Consensus 151 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~~ 222 (425)
T 1r5m_A 151 PIVSVKWNKD-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE---N---HSGDGSLGVDVEWVDDD-KFVI 222 (425)
T ss_dssp CEEEEEECTT-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------------CCCBSCCEEEETT-EEEE
T ss_pred cEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec---c---ccCCcceeeEEEEcCCC-EEEE
Confidence 8999999998 7899999999999999999876655443221110000000 0 00111127889999986 5889
Q ss_pred EecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhc
Q 004739 266 SYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEE 345 (732)
Q Consensus 266 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~ 345 (732)
++.+|.|++||+.+++...
T Consensus 223 ~~~~g~i~~~d~~~~~~~~------------------------------------------------------------- 241 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTG------------------------------------------------------------- 241 (425)
T ss_dssp ECGGGCEEEEETTCSSCSE-------------------------------------------------------------
T ss_pred EcCCCeEEEEEcCCCceee-------------------------------------------------------------
Confidence 9999999999988732110
Q ss_pred CCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCC
Q 004739 346 GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCK 425 (732)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (732)
T Consensus 242 -------------------------------------------------------------------------------- 241 (425)
T 1r5m_A 242 -------------------------------------------------------------------------------- 241 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCC
Q 004739 426 YKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRS 505 (732)
Q Consensus 426 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~ 505 (732)
T Consensus 242 -------------------------------------------------------------------------------- 241 (425)
T 1r5m_A 242 -------------------------------------------------------------------------------- 241 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCChhhhhhhcccCCCCCCCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccc
Q 004739 506 EREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMK 585 (732)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~ 585 (732)
.+..|...|.+++|+|++++|++++.++...+|+... .+.+
T Consensus 242 --------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~ 282 (425)
T 1r5m_A 242 --------------------------------------KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQ 282 (425)
T ss_dssp --------------------------------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCS
T ss_pred --------------------------------------eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-Cccc
Confidence 1112334456777888888888887666667788776 6788
Q ss_pred eeEeeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEE
Q 004739 586 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIW 665 (732)
Q Consensus 586 ~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW 665 (732)
..+.+|...+.++. |+|++ +|++++.|+.|++||+.+++++..+.+|...|++++|+|++.+|++++.|+.|+||
T Consensus 283 ~~~~~~~~~i~~~~----~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 283 NCFYGHSQSIVSAS----WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp EEECCCSSCEEEEE----EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEecCCCccEEEEE----ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence 89999998866555 69999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 004739 666 TPSASV 671 (732)
Q Consensus 666 ~~~~~~ 671 (732)
++.+++
T Consensus 358 ~~~~~~ 363 (425)
T 1r5m_A 358 DLKKLN 363 (425)
T ss_dssp ECHHHH
T ss_pred ECCCCc
Confidence 999887
No 71
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-32 Score=280.48 Aligned_cols=167 Identities=20% Similarity=0.290 Sum_probs=140.7
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 131 (732)
.....+ .+|...|++++|+|+ +++|++++.||.|++|++.++ .....+.+|...|.+++|+|++ ++
T Consensus 14 ~~~~~~-~gh~~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~-~~ 79 (312)
T 4ery_A 14 ALKFTL-AGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDG----------KFEKTISGHKLGISDVAWSSDS-NL 79 (312)
T ss_dssp EEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTTS-SE
T ss_pred eeEEEE-cccCCcEEEEEECCC--CCEEEEeeCCCeEEEEeCCCc----------ccchhhccCCCceEEEEEcCCC-CE
Confidence 445555 799999999999999 589999999999999999763 2367788999999999999954 89
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004739 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 211 (732)
Q Consensus 132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i 211 (732)
|++++.|+.|++||+++++.. .....|...|.++.|+|+ +.+|++|+.|+.|++
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCL-------------------------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRI 133 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEE-------------------------EEEECCSSCEEEEEECSS-SSEEEEEETTSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEE-------------------------EEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence 999999999999999876521 112346668999999998 789999999999999
Q ss_pred EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
||+++.+.+..+ ..|.. +|.+++|+|++++|++++.||.|++||+.+
T Consensus 134 wd~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 180 (312)
T 4ery_A 134 WDVKTGKCLKTL--------------------PAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180 (312)
T ss_dssp EETTTCCEEEEE--------------------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EECCCCEEEEEe--------------------cCCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 999987644333 33444 599999999999999999999999999887
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.7e-33 Score=282.94 Aligned_cols=265 Identities=13% Similarity=0.163 Sum_probs=207.1
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~--~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+..+ .+|.+.|.+++|+|+..+++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 456889999999999999999999999999999999974 4667777 7999999999998642258999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+||++++.. ..+..+.+|...|.+++|+|+. +.+|++++.|+.|++||+++.....
T Consensus 81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--------------- 137 (297)
T 2pm7_B 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--------------- 137 (297)
T ss_dssp EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---------------
T ss_pred EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---------------
Confidence 999986432 2356778899999999999962 5899999999999999998753110
Q ss_pred ccCCccccccCCCCCccceEEEEecCCC------------CCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTR------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 236 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~------------~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 236 (732)
......|...|.+++|+|+. +.+|++|+.|++|++||+++.+.... +...+
T Consensus 138 --------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~---------~~~~l 200 (297)
T 2pm7_B 138 --------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LESTL 200 (297)
T ss_dssp --------CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE---------EEEEE
T ss_pred --------eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE---------EEEEe
Confidence 01112466689999999962 46999999999999999986542110 01111
Q ss_pred cccccccCCCccccEEEEEEcCCC---CEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004739 237 CPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD 313 (732)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~sp~g---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (732)
.+|.. .|++++|+|++ ++|++++.|++|+|||+.+........ . + ...++...+.+++
T Consensus 201 -------~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~-------~--~--~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 201 -------EGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT-------L--L--KEEKFPDVLWRAS 261 (297)
T ss_dssp -------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-------E--S--SSSCCSSCEEEEE
T ss_pred -------cCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcccee-------e--e--ecccCCCcEEEEE
Confidence 45665 69999999985 899999999999999998743211100 0 0 1234556788899
Q ss_pred cCCCccccccccccCcchhhHHHHHHHhhhh
Q 004739 314 FLQTNIRVRGEVATGLGKCRMLVEIARNSLE 344 (732)
Q Consensus 314 ~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~ 344 (732)
|+|+|+.++ +++.|+.+++ |+..
T Consensus 262 ~s~~g~~la---s~~~D~~v~l-----w~~~ 284 (297)
T 2pm7_B 262 WSLSGNVLA---LSGGDNKVTL-----WKEN 284 (297)
T ss_dssp ECSSSCCEE---EEETTSCEEE-----EEEC
T ss_pred ECCCCCEEE---EEcCCCcEEE-----EEEC
Confidence 999999999 9999999999 8765
No 73
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.6e-33 Score=287.02 Aligned_cols=173 Identities=20% Similarity=0.173 Sum_probs=133.6
Q ss_pred eeEEEEccCCCcCeEEEEE-----ec-CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004739 52 KLLHSIETGHSANVFCTKF-----VP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~-----s~-~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 125 (732)
++...+ .+|...|++++| ++ + +++|++|+.|++|++||+....... ....+...+.+|...|.+++|+
T Consensus 12 ~~~~~l-~gH~~~V~~~~~~~s~~~~~d--~~~l~sgs~D~~v~iWd~~~~~~~~---~~~~~~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 12 VKRGIL-EGHSDWVTSIVAGFSQKENED--SPVLISGSRDKTVMIWKLYEEEQNG---YFGIPHKALTGHNHFVSDLALS 85 (343)
T ss_dssp EEEEEE-ECCSSCEEEEEECCCSSTTCC--CCEEEEEETTSCEEEEEECSSCCSS---BSEEEEEEECCCSSCEEEEEEC
T ss_pred eeeeee-ccchhhhhheeeEEEeecCCC--CCEEEEEcCCCEEEEEECCcCCccc---ccccccchhccCCCceEEEEEC
Confidence 344556 799999999999 66 5 5899999999999999997532110 0012356788999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004739 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 205 (732)
Q Consensus 126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~ 205 (732)
|+ +.++++++.|++|++||+++++. +....+|...|.+++|+|+ +.+|++++.
T Consensus 86 ~~-~~~l~s~s~D~~v~lwd~~~~~~-------------------------~~~~~~h~~~v~~v~~sp~-~~~l~s~~~ 138 (343)
T 2xzm_R 86 QE-NCFAISSSWDKTLRLWDLRTGTT-------------------------YKRFVGHQSEVYSVAFSPD-NRQILSAGA 138 (343)
T ss_dssp SS-TTEEEEEETTSEEEEEETTSSCE-------------------------EEEEECCCSCEEEEEECSS-TTEEEEEET
T ss_pred CC-CCEEEEEcCCCcEEEEECCCCcE-------------------------EEEEcCCCCcEEEEEECCC-CCEEEEEcC
Confidence 95 48999999999999999988752 1122356779999999999 789999999
Q ss_pred CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC----------CEEEEEecCCeEEEE
Q 004739 206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG----------EEVLLSYSGEHVYLM 275 (732)
Q Consensus 206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g----------~~l~~~~~dg~v~iw 275 (732)
|+.|++||+...... .. ....+|.. .|.+++|+|++ .+|++++.||.|++|
T Consensus 139 d~~i~~wd~~~~~~~-~~-----------------~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 139 EREIKLWNILGECKF-SS-----------------AEKENHSD-WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp TSCEEEEESSSCEEE-EC-----------------CTTTSCSS-CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred CCEEEEEeccCCcee-ee-----------------ecccCCCc-eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 999999999732111 00 00023444 59999999987 789999999999999
Q ss_pred E
Q 004739 276 D 276 (732)
Q Consensus 276 d 276 (732)
|
T Consensus 200 d 200 (343)
T 2xzm_R 200 N 200 (343)
T ss_dssp E
T ss_pred c
Confidence 8
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-33 Score=299.08 Aligned_cols=307 Identities=11% Similarity=0.031 Sum_probs=224.0
Q ss_pred cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004739 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 142 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 142 (732)
..+++++|+|+ +++|++++.|+.|++||+.+... ...+..| ..+....|+| ++++|++++.||.|+
T Consensus 57 ~~~~~~~~s~~--g~~l~~~~~d~~v~i~d~~~~~~----------~~~~~~~-~~~~~~~~~~-~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 57 DAGKGNTFEKV--GSHLYKARLDGHDFLFNTIIRDG----------SKMLKRA-DYTAVDTAKL-QMRRFILGTTEGDIK 122 (420)
T ss_dssp BCCTTCEEEEE--ETTEEEEEETTEEEEEECCSEET----------TTTSCSC-CEEEEEEECS-SSCEEEEEETTSCEE
T ss_pred ccccceeeeec--CCeEEEEEcCCcEEEEEecccce----------eeEEecC-CceEEEEEec-CCCEEEEEECCCCEE
Confidence 33558999999 58999999999999999986432 3334444 3444456777 558999999999999
Q ss_pred EEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Q 004739 143 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 222 (732)
Q Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~ 222 (732)
+||+.+++. ......|...|.+++|+|+ +.+|++|+.|+.|++||+++.+.+..
T Consensus 123 iwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~ 176 (420)
T 3vl1_A 123 VLDSNFNLQ-------------------------REIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGSNPRT 176 (420)
T ss_dssp EECTTSCEE-------------------------EEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCCCEE
T ss_pred EEeCCCcce-------------------------eeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeCCCCcCceE
Confidence 999886541 1223457779999999998 78999999999999999998765544
Q ss_pred cccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCC
Q 004739 223 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 302 (732)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (732)
+ .+|.. .|++++|+|++++|++++.||.|++||+.+++....+..+.
T Consensus 177 ~--------------------~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~------------ 223 (420)
T 3vl1_A 177 L--------------------IGHRA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE------------ 223 (420)
T ss_dssp E--------------------ECCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT------------
T ss_pred E--------------------cCCCC-cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC------------
Confidence 3 44555 59999999999999999999999999999854322111100
Q ss_pred CCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCCccchhhhhhHHHH
Q 004739 303 NGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAAL 382 (732)
Q Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 382 (732)
.+...+..+++.+++...
T Consensus 224 -~~~~~v~~~~~~~~~~~~------------------------------------------------------------- 241 (420)
T 3vl1_A 224 -NPHDGVNSIALFVGTDRQ------------------------------------------------------------- 241 (420)
T ss_dssp -BTTCCEEEEEEEECCCSS-------------------------------------------------------------
T ss_pred -CCCCCccEEEEecCCcce-------------------------------------------------------------
Confidence 000011111111100000
Q ss_pred hhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHh
Q 004739 383 LLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAET 462 (732)
Q Consensus 383 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~ 462 (732)
T Consensus 242 -------------------------------------------------------------------------------- 241 (420)
T 3vl1_A 242 -------------------------------------------------------------------------------- 241 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCCCCcccccccccCCcc
Q 004739 463 EKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLN 542 (732)
Q Consensus 463 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~~d~~~~~~~~~~~~~ 542 (732)
T Consensus 242 -------------------------------------------------------------------------------- 241 (420)
T 3vl1_A 242 -------------------------------------------------------------------------------- 241 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCCCC-EEEEecCCCcEE
Q 004739 543 VRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGD-YIASGSDDGRWF 621 (732)
Q Consensus 543 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~-~lasgs~Dg~i~ 621 (732)
....+...+.+++|+|++++|++++.++...+|+............+|...++++. |+|+++ +|++|+.||.|+
T Consensus 242 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 242 -LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLT----VDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp -CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEE----ECSSCTTEEEEEETTSEEE
T ss_pred -eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEE----EeCCCCCEEEEEeCCCeEE
Confidence 01123445678888888888888877777777887763333334456777766555 699999 999999999999
Q ss_pred EEEcCcccE-EEEEec-CcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004739 622 IWEKQTGRL-IKMLLG-DEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 670 (732)
Q Consensus 622 iWd~~tg~~-~~~l~g-H~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~ 670 (732)
+||+.+++. +..+.+ |...|+++.| |++.+|+|++.|++|++|++...
T Consensus 317 vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 317 QWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 999999854 888888 6778888855 57889999999999999999874
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-32 Score=283.03 Aligned_cols=205 Identities=19% Similarity=0.264 Sum_probs=169.5
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE---EEE-ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~---~~~-~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
..+|..+|++++|+|++++|++++ ||.|++||+.+++.. ..+ ..+|...|.+++|+|+ +++|++++.|+.|++
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSI 123 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEEE
Confidence 347999999999999999999998 999999999876533 222 1278999999999998 589999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
||+..... .....+..|...|.+++|+|+ +++|++++.||.|++||+++++.
T Consensus 124 ~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~~------------------- 175 (337)
T 1gxr_A 124 WDLAAPTP--------RIKAELTSSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQTL------------------- 175 (337)
T ss_dssp EECCCC----------EEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEE-------------------
T ss_pred EECCCCCc--------ceeeecccCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCce-------------------
Confidence 99986432 235677889999999999995 58999999999999999987652
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
+.....|...+.+++|+|+ +.+|++++.|+.|++||+++.+.+..+ .+.. .
T Consensus 176 ------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~~~-~ 226 (337)
T 1gxr_A 176 ------VRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH---------------------DFTS-Q 226 (337)
T ss_dssp ------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE---------------------ECSS-C
T ss_pred ------eeeeecccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCceEeee---------------------cCCC-c
Confidence 1112345668999999998 789999999999999999987543322 1222 5
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+.+++|+|++++|++++.++.|++||+.+
T Consensus 227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999999999999999999999987
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-33 Score=300.20 Aligned_cols=209 Identities=15% Similarity=0.105 Sum_probs=167.3
Q ss_pred EeeeccCCceeEEEEcCC------CCEEEEEeCCCcEEEEeCCCCee-----------EEEEccCCCcCeEEEEEecCCC
Q 004739 13 RELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL-----------LHSIETGHSANVFCTKFVPETS 75 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~d------g~~lasg~~dg~i~vWd~~~~~~-----------~~~~~~~h~~~V~~~~~s~~~~ 75 (732)
.++.+|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++. ...+ .+|...|++++|+|+
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-- 277 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-- 277 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC--
Confidence 456788999999999997 57999999999999999987642 1345 689999999999986
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEE--EEecCCCcEEEEEeCCCcEEEEECCCCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGNPHVVWSASEDGTLRQHDFRQGSSCP 153 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~ 153 (732)
..|++|+.||+|++||++++. .+...+.+|...|+++ +|+|++.++|+|++.|++|++||+++++..
T Consensus 278 -~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~- 346 (524)
T 2j04_B 278 -TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT- 346 (524)
T ss_dssp -SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH-
T ss_pred -CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc-
Confidence 589999999999999998642 2356688999999999 466643389999999999999999876421
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 233 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 233 (732)
..+.. . .....|.+++|+|+ +..|++++.|++|++||+++...+..+
T Consensus 347 ----------~~~~~-----------~-~~~~~v~~v~fsp~-~~~l~s~~~d~tv~lwd~~~~~~~~~l---------- 393 (524)
T 2j04_B 347 ----------KTTVS-----------R-FRGSNLVPVVYCPQ-IYSYIYSDGASSLRAVPSRAAFAVHPL---------- 393 (524)
T ss_dssp ----------CEEEE-----------E-CSCCSCCCEEEETT-TTEEEEECSSSEEEEEETTCTTCCEEE----------
T ss_pred ----------ccccc-----------c-cccCcccceEeCCC-cCeEEEeCCCCcEEEEECcccccceee----------
Confidence 01100 0 00124778999998 778999999999999999986543332
Q ss_pred ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. .|++|+|+|+|++|++|+.||+|++||+..
T Consensus 394 ----------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 394 ----------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ----------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ----------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 45655 699999999999999999999999999754
No 77
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-32 Score=280.90 Aligned_cols=258 Identities=14% Similarity=0.181 Sum_probs=209.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
.+++.+++|...|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+ +.+|++|+.|++|+
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKK--ASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTT--SCEEEEEETTSCEE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence 356789999999999999999999999999999999999999999998 799999999999998 58999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
+||++. .++..+.+|...|.++.|.|.. +.+|++++.|+.|++||+++.+.
T Consensus 133 vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------------- 188 (319)
T 3frx_A 133 VWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI------------- 188 (319)
T ss_dssp EEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-------------
T ss_pred EEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-------------
Confidence 999973 3367888999999999999843 34899999999999999987541
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
.....+|...|.+++|+|+ +.+|++|+.|+.|++||+++.+.+..+ .
T Consensus 189 ------------~~~~~~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~~~~~~--------------------~ 235 (319)
T 3frx_A 189 ------------EADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKKAMYTL--------------------S 235 (319)
T ss_dssp ------------EEEECCCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTEEEEEE--------------------E
T ss_pred ------------heeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEe--------------------c
Confidence 1122357779999999999 889999999999999999987544333 1
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccc
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE 324 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 324 (732)
.+ . .|.+++|+|++.+|++++.+ .+++|++........... .+......+...+.+++|+|||+.++
T Consensus 236 ~~-~-~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~~~~spdg~~l~-- 302 (319)
T 3frx_A 236 AQ-D-EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP--------EFAGYSKAAEPHAVSLAWSADGQTLF-- 302 (319)
T ss_dssp CC-S-CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECC--------CCTTCCGGGCCCEEEEEECTTSSEEE--
T ss_pred CC-C-cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc--------cccccccCcCcceeEEEECCCCCEEE--
Confidence 12 2 59999999999988887754 699999987332111110 01112233455677899999999999
Q ss_pred cccCcchhhHHHHHHHhhhhcC
Q 004739 325 VATGLGKCRMLVEIARNSLEEG 346 (732)
Q Consensus 325 ~~~~~d~~~~l~~~~~~~~~~~ 346 (732)
+++.|+.+++ |++.++
T Consensus 303 -sg~~Dg~i~v-----Wd~~t~ 318 (319)
T 3frx_A 303 -AGYTDNVIRV-----WQVMTA 318 (319)
T ss_dssp -EEETTSCEEE-----EEEEEC
T ss_pred -EeecCceEEE-----EEEeec
Confidence 9999999999 887654
No 78
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.1e-32 Score=281.27 Aligned_cols=176 Identities=20% Similarity=0.266 Sum_probs=136.0
Q ss_pred CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004739 50 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129 (732)
Q Consensus 50 ~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 129 (732)
+.+...++ ++|.+.|++++|+|+. +++|+||+.|++|+|||+....... ..+...+.+|...|.+++|+|++
T Consensus 27 ~~~l~~tL-~GH~~~V~~v~~sp~~-~~~l~S~s~D~~i~vWd~~~~~~~~-----~~~~~~l~~h~~~V~~~~~s~dg- 98 (340)
T 4aow_A 27 QMTLRGTL-KGHNGWVTQIATTPQF-PDMILSASRDKTIIMWKLTRDETNY-----GIPQRALRGHSHFVSDVVISSDG- 98 (340)
T ss_dssp EEEEEEEE-CCCSSCEEEEEECTTC-TTEEEEEETTSCEEEEEECCSSSCS-----EEEEEEECCCSSCEEEEEECTTS-
T ss_pred ceEEEEEE-CCccCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCCCCccc-----ceeeEEEeCCCCCEEEEEECCCC-
Confidence 34455567 8999999999999985 5899999999999999998643221 13467788999999999999954
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004739 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 209 (732)
Q Consensus 130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v 209 (732)
++|++++.|+.|++|+....... .....+...+..+.++++ +.+|++++.|+.+
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~~~l~s~s~d~~~ 152 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTT-------------------------RRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI 152 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEE-------------------------EEEECCSSCEEEEEECTT-SSCEEEEETTSCE
T ss_pred CEEEEEcccccceEEeeccccee-------------------------eeecCCCCceeEEEEeec-CccceeecCCCeE
Confidence 89999999999999998776421 111123346778888988 7899999999999
Q ss_pred EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004739 210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~ 279 (732)
++||+......... ..+|.. .+..++|++++ .++++++.|+.|++||+.+
T Consensus 153 ~~~d~~~~~~~~~~-------------------~~~~~~-~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~ 204 (340)
T 4aow_A 153 KLWNTLGVCKYTVQ-------------------DESHSE-WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204 (340)
T ss_dssp EEECTTSCEEEEEC-------------------SSSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred EEEEeCCCceEEEE-------------------eccccC-cccceEEccCCCCcEEEEEcCCCEEEEEECCC
Confidence 99998754321110 033444 59999999865 5788999999999999876
No 79
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-34 Score=298.50 Aligned_cols=200 Identities=16% Similarity=0.182 Sum_probs=144.6
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.-...|.+++|+|||+++||++.|++|+ |...++. + .+|...|.+++|+|+ | .++++.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l-~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~-- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I-NCNSKNLFHVKEFPL--E-------FENKLDFELAQ-- 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C-SSBGGGTEEEEEECC--C-------CCCTTTTSCCC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---e-cCCCccEEEEEECCC--C-------CcceEEEEeCC--
Confidence 4468999999999999999999999999 7555544 3 699999999999999 4 46665555543
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
+.. +..+ .|...|.+++|+|++ .+||+++.||.|++||... . +..+.
T Consensus 76 -~~~--------~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-~---------------l~~l~------ 122 (588)
T 2j04_A 76 -QNG--------LLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-M---------------LTNLD------ 122 (588)
T ss_dssp -SSC--------SSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-E---------------EEECC------
T ss_pred -Cce--------Eeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-e---------------eeecc------
Confidence 211 2222 457899999999955 8999999999999999432 0 00000
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcc-cccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS-CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
.........+.+++|+|+ |++|++|+.||+|+|||+.++..... + ..+..+ .....+|.. +|.+++
T Consensus 123 -~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~~~~-------i~l~ti---~~~~~gh~~-~V~sVa 189 (588)
T 2j04_A 123 -SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENTPEF-------YFESSI---RLSDAGSKD-WVTHIV 189 (588)
T ss_dssp -CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTCCCC-------EEEEEE---ECSCTTCCC-CEEEEE
T ss_pred -CCCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCccccccc-------eeeeee---ecccccccc-cEEEEE
Confidence 000001236899999999 89999999999999999987642100 0 000010 001134554 799999
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 256 FSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 256 ~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|+|+| |++++.|+.|++||+.+..
T Consensus 190 wSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 190 WYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EETTE--EEEEETTCCEEEECCCSSS
T ss_pred EcCCc--EEEEeCCCeEEEEECCCCc
Confidence 99999 8899999999999998844
No 80
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-32 Score=292.94 Aligned_cols=203 Identities=14% Similarity=0.190 Sum_probs=149.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEec-CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 26 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 26 ~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~-~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
.|+|+++.+++++ .|+ .+++.+..+..+|.+.|++++|+| + +++|++|+.||+|+|||+.+.....
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~--~~~l~s~s~dg~v~vwd~~~~~~~~---- 100 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGE--TPYLITGSDQGVIKIWNLKEIIVGE---- 100 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSS--SCEEEEEETTSEEEEEEHHHHHTTC----
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCC--CCEEEEecCCceEEEeECcccccCc----
Confidence 3678888887765 488 557788888678999999999999 7 5899999999999999997511110
Q ss_pred CCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC---CCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 105 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 105 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
...+...+ +|...|++++|+| ++++|++++.||.|++||+. +++.. ...... ....+...+
T Consensus 101 ~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~------------~~~~~~--~i~~~~~~~ 164 (437)
T 3gre_A 101 VYSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV------------KFLNCE--CIRKINLKN 164 (437)
T ss_dssp CCSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE------------EEEEEE--EEEEEEGGG
T ss_pred ccceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee------------eccccc--eeEEEEccC
Confidence 01122333 5899999999999 45899999999999999995 33211 000000 011111111
Q ss_pred -CCccceEEEE--ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCC--CccccEEEEEE
Q 004739 182 -KQTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG--RSSLHLTHVTF 256 (732)
Q Consensus 182 -~~~~~v~~i~--~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~ 256 (732)
.+...+.++. ++++ +.+|++|+.|+.|++||+++.+.+..+ .+ |.. .|++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------~~~~h~~-~v~~~~~ 222 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTLERLQII--------------------ENSPRHG-AVSSICI 222 (437)
T ss_dssp GSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCGGGC-CEEEEEE
T ss_pred cccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCeeeEEE--------------------ccCCCCC-ceEEEEE
Confidence 1344667777 5577 789999999999999999987655443 22 333 6999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCC
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+|++++|++++.||.|++||+++
T Consensus 223 s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 223 DEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp CTTSCEEEEEETTSCEEEEETTT
T ss_pred CCCCCEEEEEcCCCeEEEEEcCC
Confidence 99999999999999999999987
No 81
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-30 Score=278.43 Aligned_cols=214 Identities=16% Similarity=0.232 Sum_probs=175.8
Q ss_pred hccccEee--eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 8 RLSQEREL--EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l--~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+.++.+.+ .+|...|++++|+|+|++||+|+.||+|+|||+.+++++..+ .+|...|.++++++ .+|++|+.|
T Consensus 134 tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~~----~~l~sgs~d 208 (420)
T 4gga_A 134 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS----YILSSGSRS 208 (420)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEET----TEEEEEETT
T ss_pred CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeCC----CEEEEEeCC
Confidence 44555554 467889999999999999999999999999999999999999 79999999998864 689999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+.+++||..... ..+..+.+|...+..+.++|++ .++++++.|+.|++|+...++...
T Consensus 209 ~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~------------ 266 (420)
T 4gga_A 209 GHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGW------------ 266 (420)
T ss_dssp SEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCS------------
T ss_pred CceeEeeecccc---------eeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccc------------
Confidence 999999998643 3367888999999999999954 899999999999999998876321
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE--eCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
..+.....+...|.+++|+|.++.+++++ +.|++|++||+.+++.+..+
T Consensus 267 ---------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~-------------------- 317 (420)
T 4gga_A 267 ---------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-------------------- 317 (420)
T ss_dssp ---------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--------------------
T ss_pred ---------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--------------------
Confidence 11222345667899999999978888775 47999999999987654333
Q ss_pred CCCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~ 279 (732)
..+. .+.++.|+|+++.|++++ .|+.|+|||+.+
T Consensus 318 ~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 318 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred cccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 2222 489999999999998876 589999999866
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.2e-32 Score=285.06 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=140.8
Q ss_pred EeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004739 46 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125 (732)
Q Consensus 46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 125 (732)
|++...+....+ .+|...|++++|+|++ .++|++|+.||.|++||+.+.... ......+|...|.+++|+
T Consensus 58 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~~~ 127 (383)
T 3ei3_B 58 RSLKSYKLHRTA-SPFDRRVTSLEWHPTH-PTTVAVGSKGGDIILWDYDVQNKT--------SFIQGMGPGDAITGMKFN 127 (383)
T ss_dssp HHHTTCEEEEEE-CCCSSCEEEEEECSSC-TTEEEEEEBTSCEEEEETTSTTCE--------EEECCCSTTCBEEEEEEE
T ss_pred ccccccceEEec-cCCCCCEEEEEECCCC-CCEEEEEcCCCeEEEEeCCCcccc--------eeeecCCcCCceeEEEeC
Confidence 344556667777 7999999999999983 289999999999999999864321 122334799999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004739 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 205 (732)
Q Consensus 126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~ 205 (732)
|+++++|++++.|+.|++||+.... ...+.....+...|.+++|+|+ +.+|++|+.
T Consensus 128 ~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 183 (383)
T 3ei3_B 128 QFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVS-RQMLATGDS 183 (383)
T ss_dssp TTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETT-TTEEEEEET
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCC-CCEEEEECC
Confidence 9666899999999999999998532 1122223345568999999998 789999999
Q ss_pred CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004739 206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~ 279 (732)
|+.|++||++ .+.+..+ .+|.. .|.+++|+|+++ +|++++.|+.|++||+.+
T Consensus 184 d~~i~i~d~~-~~~~~~~--------------------~~h~~-~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 184 TGRLLLLGLD-GHEIFKE--------------------KLHKA-KVTHAEFNPRCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp TSEEEEEETT-SCEEEEE--------------------ECSSS-CEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEECC-CCEEEEe--------------------ccCCC-cEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence 9999999994 3332222 34544 599999999999 999999999999999887
No 83
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=9.8e-32 Score=282.21 Aligned_cols=169 Identities=8% Similarity=0.040 Sum_probs=135.5
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
..|..+|++++|+|+ +++|++++.|+.|++||+.+... .++..+.+|...|.+++|+|+ +++|++++.|
T Consensus 5 ~~~~~~i~~~~~s~~--~~~l~~~~~d~~v~i~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d 73 (372)
T 1k8k_C 5 SFLVEPISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKW--------VQVHELKEHNGQVTGVDWAPD-SNRIVTCGTD 73 (372)
T ss_dssp ESCSSCCCEEEECTT--SSEEEEECSSSEEEEEEEETTEE--------EEEEEEECCSSCEEEEEEETT-TTEEEEEETT
T ss_pred cccCCCeEEEEECCC--CCEEEEEeCCCEEEEEeCCCCcE--------EeeeeecCCCCcccEEEEeCC-CCEEEEEcCC
Confidence 468999999999999 58999999999999999986421 146788899999999999995 5899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
|.|++||+.+++.. .......+...|.+++|+|+ +.+|++++.|+.|++||++...
T Consensus 74 g~i~vwd~~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK-----------------------PTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp SCEEEEEEETTEEE-----------------------EEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEEEETTT
T ss_pred CeEEEEECCCCeee-----------------------eeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEEEEEecCCC
Confidence 99999999776411 11112345668999999999 7899999999999999998765
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..... ..+ ..+|.. .|++++|+|++++|++++.||.|++||+..
T Consensus 130 ~~~~~----------~~~------~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 130 DWWVC----------KHI------KKPIRS-TVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp TEEEE----------EEE------CTTCCS-CEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred cceee----------eee------ecccCC-CeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 31111 000 022333 699999999999999999999999999876
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=6.5e-31 Score=284.94 Aligned_cols=319 Identities=16% Similarity=0.170 Sum_probs=236.5
Q ss_pred eEEEEccCCCcCe-EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004739 53 LLHSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131 (732)
Q Consensus 53 ~~~~~~~~h~~~V-~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 131 (732)
....+ .+|...| .++.|+ +++|++|+.||+|++||+.++ +++..+.+|...|.+++|+|++ +
T Consensus 113 ~~~~l-~~h~~~v~~~~~~~----~~~l~sgs~dg~i~vwd~~~~----------~~~~~~~~h~~~V~~l~~~~~~--~ 175 (464)
T 3v7d_B 113 QRTTL-RGHMTSVITCLQFE----DNYVITGADDKMIRVYDSINK----------KFLLQLSGHDGGVWALKYAHGG--I 175 (464)
T ss_dssp EEEEE-ECCSSSCEEEEEEE----TTEEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECSTT--E
T ss_pred ceEEE-cCCCCCcEEEEEEC----CCEEEEEcCCCcEEEEECCCC----------cEEEEEeCCCcCEEEEEEcCCC--E
Confidence 34455 6898875 666664 369999999999999999864 3377888999999999999844 8
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC-CCCEEEEEeCCCeEE
Q 004739 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFAR 210 (732)
Q Consensus 132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~tg~~dg~v~ 210 (732)
|++|+.||.|++||+++++. +.....|...|.+++|++. ++.+|++|+.|+.|+
T Consensus 176 l~s~s~dg~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 176 LVSGSTDRTVRVWDIKKGCC-------------------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp EEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred EEEEeCCCCEEEEECCCCcE-------------------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 99999999999999987652 1222356779999999852 268999999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccc--cc-cccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYF--CP-MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 287 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 287 (732)
+||+++.............+...... .+ ......+|.. .+.++ ++++++|++++.||.|++||+.+++..
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~---- 303 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-SVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL---- 303 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-CEEEE--EEETTEEEEEETTSCEEEEETTTTEEE----
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-eEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE----
Confidence 99999876543321111100000000 00 0001134444 46665 678899999999999999999773210
Q ss_pred ecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCC
Q 004739 288 TVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI 367 (732)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 367 (732)
T Consensus 304 -------------------------------------------------------------------------------- 303 (464)
T 3v7d_B 304 -------------------------------------------------------------------------------- 303 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhH
Q 004739 368 GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 447 (732)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 447 (732)
T Consensus 304 -------------------------------------------------------------------------------- 303 (464)
T 3v7d_B 304 -------------------------------------------------------------------------------- 303 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCCC
Q 004739 448 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGD 527 (732)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~~ 527 (732)
T Consensus 304 -------------------------------------------------------------------------------- 303 (464)
T 3v7d_B 304 -------------------------------------------------------------------------------- 303 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccCC
Q 004739 528 EGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQR 607 (732)
Q Consensus 528 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~d 607 (732)
..+.+|...|.+++|+|++++|++++.++...+|+... .+.+..+.+|...+.++. ++
T Consensus 304 ---------------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~----~~-- 361 (464)
T 3v7d_B 304 ---------------YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLR----LS-- 361 (464)
T ss_dssp ---------------EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEE----EC--
T ss_pred ---------------EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEE----Ec--
Confidence 11223445567788888888888887777777788776 778999999998865554 45
Q ss_pred CCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccc-cCCCCCCCc
Q 004739 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIV-SGGAAGPDT 684 (732)
Q Consensus 608 g~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~-~~gh~~~~~ 684 (732)
+++|++|+.||+|++||+.+++....+. |...+..++|+|++.+|++++ |++|+|||+.+++.+.. +.+|.+++.
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~ 437 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIW 437 (464)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEE
Confidence 6999999999999999999998776664 788899999999999999999 99999999999998875 666665543
No 85
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=2.1e-31 Score=282.99 Aligned_cols=211 Identities=21% Similarity=0.224 Sum_probs=164.9
Q ss_pred ceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCe----eEEEEccCCCcCeEEEEEec-CCCCCEEEEEECCCcEEEEEcC
Q 004739 21 CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 21 ~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~----~~~~~~~~h~~~V~~~~~s~-~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
....++++|+...+ ++++.||.|+||++.... .+..+ .+|...|++++|+| + +++|++|+.||+|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEcc
Confidence 45568888877544 457889999999986543 23344 68999999999999 6 5899999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
+..... ....++..+.+|...|.+++|+|++.++|++++.|+.|++||+++++.. ..+
T Consensus 113 ~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~----- 170 (402)
T 2aq5_A 113 DGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------LTL----- 170 (402)
T ss_dssp TTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE--------------EEE-----
T ss_pred CCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc--------------EEE-----
Confidence 643210 0113467888999999999999976689999999999999999876521 000
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+. .+|.+..+.++
T Consensus 171 ----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~~~ 226 (402)
T 2aq5_A 171 ----GPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVVAEKD-------------------RPHEGTRPVHA 226 (402)
T ss_dssp ----CTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEE-------------------CSSCSSSCCEE
T ss_pred ----ecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCceeeeec-------------------cCCCCCcceEE
Confidence 01346678999999998 7899999999999999999875443321 22333348899
Q ss_pred EEcCCCCEEEEE---ecCCeEEEEECCCC
Q 004739 255 TFSPNGEEVLLS---YSGEHVYLMDVNHA 280 (732)
Q Consensus 255 ~~sp~g~~l~~~---~~dg~v~iwd~~~~ 280 (732)
+|+|++++|++| +.|+.|++||+.+.
T Consensus 227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 999999999999 78999999999873
No 86
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=3.8e-30 Score=275.42 Aligned_cols=223 Identities=15% Similarity=0.169 Sum_probs=160.8
Q ss_pred CceeEEEEcCCC----------CEEEEEeC----CCcEEEEeCC--------------------------CCeeEEEEcc
Q 004739 20 GCVNAISWNSKG----------SLLISGSD----DTHINVWSYS--------------------------SRKLLHSIET 59 (732)
Q Consensus 20 ~~V~~l~~s~dg----------~~lasg~~----dg~i~vWd~~--------------------------~~~~~~~~~~ 59 (732)
-|..++.|.|+. .+|+.|+. .+.|.|.++. +++.......
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 577899999965 46777764 3567777542 1122212225
Q ss_pred CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC
Q 004739 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 139 (732)
Q Consensus 60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 139 (732)
.|.+.|++++|+|+. +.+|++++.||.|++||+..............++..+.+|...|.+++|+|++..+|++++.||
T Consensus 126 ~h~~~v~~l~~~p~~-~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 126 NHEGEVNRARYMPQN-ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EESSCCSEEEEETTE-EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred cCCCcEEEEEECCCC-CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 799999999999973 4799999999999999998631111111112457888899999999999997755999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
.|++||+....... . . .........|...|.+++|+|+++.+|++++.|+.|++||+++...
T Consensus 205 ~i~vwd~~~~~~~~----------~-~-------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 205 TICLWDINATPKEH----------R-V-------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp CEEEEETTSCCBGG----------G-E-------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred eEEEEeCCCCCCCC----------c-e-------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 99999998753110 0 0 0011222356778999999996688999999999999999997631
Q ss_pred CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004739 220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~ 279 (732)
.. ++..+ ..|.. .|++++|+|+++ +|++|+.||.|++||+++
T Consensus 267 ~~----------~~~~~-------~~~~~-~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 267 SK----------PSHTV-------DAHTA-EVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp SS----------CSEEE-------ECCSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred Cc----------ceeEe-------ecCCC-CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 11 11111 23444 599999999987 688999999999999887
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.5e-30 Score=279.20 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=133.4
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|...|+||+|+|.. +++|++|+.||+|+|||+.+.... ....+.+|...|++|+|+|.++++|++++.|
T Consensus 116 ~~~~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~--------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 116 APFDRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKP--------TFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp EECSSCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCC--------EEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCCCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCce--------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 5788999999999964 579999999999999999875432 2456778999999999999777999999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
|+|++||+++... ..+.....+...+.+++|+|+ +.+|++|+.||.|++||++..
T Consensus 187 ~~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~i~~wd~~~~- 241 (435)
T 4e54_B 187 GTTRLQDFKGNIL-----------------------RVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGNVILLNMDGK- 241 (435)
T ss_dssp SCEEEEETTSCEE-----------------------EEEECCSSCSCCCCCEEEETT-TTEEEEECSSSBEEEEESSSC-
T ss_pred CEEEEeeccCCce-----------------------eEEeccCCCCccEEEEEECCC-CCEEEEEeCCCcEeeeccCcc-
Confidence 9999999976431 011122234446788999998 789999999999999998743
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~ 279 (732)
.+..+ .+|.. .|++++|+|+++ +|++++.|+.|+|||+++
T Consensus 242 ~~~~~--------------------~~h~~-~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 242 ELWNL--------------------RMHKK-KVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp BCCCS--------------------BCCSS-CEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred eeEEE--------------------ecccc-eEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 22222 45555 699999999886 788899999999999987
No 88
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.1e-31 Score=302.13 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=136.4
Q ss_pred EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEE
Q 004739 55 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS 134 (732)
Q Consensus 55 ~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 134 (732)
..+ .+|.+.|++++|+|+. +++|+||+.|++|++|++....... ......+.+|...|.+++|+|++ ++|++
T Consensus 376 ~~l-~~H~~~V~~v~~~~~~-~~~l~s~s~D~~i~~W~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~s~~g-~~l~s 447 (694)
T 3dm0_A 376 GTM-RAHTDMVTAIATPIDN-ADIIVSASRDKSIILWKLTKDDKAY-----GVAQRRLTGHSHFVEDVVLSSDG-QFALS 447 (694)
T ss_dssp EEE-ECCSSCEEEEECCTTC-CSEEEEEETTSEEEEEECCCSTTCS-----CEEEEEEECCSSCEEEEEECTTS-SEEEE
T ss_pred hhc-ccCCceeEEEEecCCC-CCEEEEEeCCCcEEEEEccCCCccc-----ccccceecCCCCcEEEEEECCCC-CEEEE
Confidence 345 7999999999999975 5899999999999999998643211 12346788999999999999954 89999
Q ss_pred EeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 135 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 135 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
|+.||.|++||+.++.. +....+|...|.+++|+|+ +.+|++|+.|++|++||+
T Consensus 448 gs~Dg~v~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iwd~ 501 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVS-------------------------TRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTIKLWNT 501 (694)
T ss_dssp EETTSEEEEEETTTTEE-------------------------EEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECT
T ss_pred EeCCCcEEEEECCCCcc-------------------------eeEEeCCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEC
Confidence 99999999999987652 1122357778999999999 789999999999999998
Q ss_pred CCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Q 004739 215 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g--~~l~~~~~dg~v~iwd~~~ 279 (732)
......... ....+|.. .|.+++|+|++ ..|++++.|+.|++||+.+
T Consensus 502 ~~~~~~~~~-----------------~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 502 LGECKYTIS-----------------EGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp TSCEEEEEC-----------------SSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred CCCcceeec-----------------cCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence 643211000 00134555 59999999987 6899999999999999876
No 89
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9.4e-30 Score=269.97 Aligned_cols=210 Identities=17% Similarity=0.275 Sum_probs=175.3
Q ss_pred hccccEeeec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 8 RLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 8 ~~~~~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
+.+....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|...|.+++|++ ++|++++.||
T Consensus 122 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~----~~l~~~~~dg 196 (401)
T 4aez_A 122 SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWNR----HVLSSGSRSG 196 (401)
T ss_dssp TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEET----TEEEEEETTS
T ss_pred CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEECC----CEEEEEcCCC
Confidence 3445555555 8999999999999999999999999999999999999998 79999999999953 6999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
.|++||++... ..+..+.+|...|.+++|+| ++++|++++.|+.|++||+++++.
T Consensus 197 ~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~--------------- 251 (401)
T 4aez_A 197 AIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP--------------- 251 (401)
T ss_dssp EEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE---------------
T ss_pred CEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc---------------
Confidence 99999998532 33678889999999999999 458999999999999999987652
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
+.....|...|.+++|+|++..++++++ .|+.|++||+++++.+..+ .
T Consensus 252 ----------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--------------------~ 301 (401)
T 4aez_A 252 ----------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--------------------D 301 (401)
T ss_dssp ----------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--------------------E
T ss_pred ----------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--------------------e
Confidence 1122346668999999998778888876 7999999999987654433 1
Q ss_pred CCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~ 279 (732)
+. ..|.+++|+|++++|++++ .||.|++||+.+
T Consensus 302 -~~-~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 302 -AG-SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp -CS-SCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred -CC-CcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 11 2599999999999999954 799999999876
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.7e-30 Score=279.91 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=127.8
Q ss_pred eeEEEEccCCCcCe-EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004739 52 KLLHSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130 (732)
Q Consensus 52 ~~~~~~~~~h~~~V-~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 130 (732)
+....+ .+|.+.| .++.+ + |++|++|+.||+|++||+.++ .++..+.+|...|.+++|++ +
T Consensus 109 ~~~~~l-~~h~~~v~~~~~~--~--g~~l~sg~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~ 170 (445)
T 2ovr_B 109 KSPKVL-KGHDDHVITCLQF--C--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMRD---N 170 (445)
T ss_dssp CCCEEE-ECSTTSCEEEEEE--E--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEET---T
T ss_pred ceeEEe-cccCCCcEEEEEE--c--CCEEEEEECCCcEEEEECCCC----------cEEEEEcCCCCCEEEEEecC---C
Confidence 344555 7898875 55554 4 479999999999999999864 33678889999999999973 6
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
++++++.||.|++||+.+++. +....+|...|.++.|+ +..+++|+.||.|+
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGEC-------------------------IHTLYGHTSTVRCMHLH---EKRVVSGSRDATLR 222 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEE-------------------------EEEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred EEEEEeCCCeEEEEECCcCcE-------------------------EEEECCCCCcEEEEEec---CCEEEEEeCCCEEE
Confidence 899999999999999987652 12223567789999996 45899999999999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+||+++++.+..+ .+|.. .|.+++| ++++|++++.||.|++||+.++
T Consensus 223 ~wd~~~~~~~~~~--------------------~~~~~-~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 269 (445)
T 2ovr_B 223 VWDIETGQCLHVL--------------------MGHVA-AVRCVQY--DGRRVVSGAYDFMVKVWDPETE 269 (445)
T ss_dssp EEESSSCCEEEEE--------------------ECCSS-CEEEEEE--CSSCEEEEETTSCEEEEEGGGT
T ss_pred EEECCCCcEEEEE--------------------cCCcc-cEEEEEE--CCCEEEEEcCCCEEEEEECCCC
Confidence 9999987654433 34444 5999999 7889999999999999998873
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.3e-30 Score=272.74 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=134.4
Q ss_pred eeEEEEccCCCcCeEEEEEecC---CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc-----ccCceeEEE
Q 004739 52 KLLHSIETGHSANVFCTKFVPE---TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----HTRRVKKLA 123 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~---~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~ 123 (732)
++...+..+|...|++++|+|+ + ...+++++.++.|++||+.+... +..+.. |...|++++
T Consensus 8 ~~~~~~~~~h~~~v~~i~~~p~~~~~-~~~~~~~~~~~~v~vw~~~~~~~----------~~~~~~~~~~~~~~~v~~~~ 76 (366)
T 3k26_A 8 KCVNSLKEDHNQPLFGVQFNWHSKEG-DPLVFATVGSNRVTLYECHSQGE----------IRLLQSYVDADADENFYTCA 76 (366)
T ss_dssp EEEEEEECTTCSCEEEEEECTTCCTT-SCEEEEEEETTEEEEEEECGGGC----------EEEEEEEECSCTTCCEEEEE
T ss_pred EEEEEeecCCCCceEEEEEecccCCC-CceEEEECCCCEEEEEEcCCCcE----------EEeeeeccccCCCCcEEEEE
Confidence 3444565799999999999984 2 35677777778999999986422 333333 567899999
Q ss_pred EecCC---CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE
Q 004739 124 VEVGN---PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 200 (732)
Q Consensus 124 ~~p~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 200 (732)
|+|+. +.+|++++.||.|++||+.+++.. .....|...|.+++|+|+++.+|
T Consensus 77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-------------------------~~~~~~~~~i~~~~~~~~~~~~l 131 (366)
T 3k26_A 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCI-------------------------KHYVGHGNAINELKFHPRDPNLL 131 (366)
T ss_dssp EEECTTTCCEEEEEEETTCEEEEECTTTCCEE-------------------------EEEESCCSCEEEEEECSSCTTEE
T ss_pred eccCCCCCCCEEEEecCCCEEEEEEchhceEe-------------------------eeecCCCCcEEEEEECCCCCCEE
Confidence 99963 369999999999999999876521 11234667999999999448899
Q ss_pred EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 201 LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 201 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
++|+.||.|++||+++.+.+..+.. + .+|.. .|.+++|+|++++|++++.||.|++||+.+
T Consensus 132 ~s~~~dg~i~iwd~~~~~~~~~~~~----------~-------~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 132 LSVSKDHALRLWNIQTDTLVAIFGG----------V-------EGHRD-EVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECS----------T-------TSCSS-CEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred EEEeCCCeEEEEEeecCeEEEEecc----------c-------ccccC-ceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 9999999999999998754433210 0 23444 699999999999999999999999999987
No 92
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=4.3e-31 Score=280.07 Aligned_cols=186 Identities=14% Similarity=0.104 Sum_probs=131.2
Q ss_pred ccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CC---cE
Q 004739 58 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NP---HV 131 (732)
Q Consensus 58 ~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~---~~ 131 (732)
..+|.+.|++++|+| ++|++|+.||.|++||+....... ...++..+.+|...|++++|+|+ ++ ++
T Consensus 12 ~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 12 GKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNEN----PKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp SSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCC----GGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCccccc----CCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 379999999999988 489999999999999998743110 01246788899999999999994 27 89
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC--ccceEEEEec----CCCCCE-EEEEe
Q 004739 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ--TLSLKSCDIS----STRPHL-LLVGG 204 (732)
Q Consensus 132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~i~~~----~~~~~~-l~tg~ 204 (732)
|++++.||.|++||+.+++... ...+. .+.....+ ...|.+++|+ |+ +.+ |++++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~---------~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~~ 145 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETK---------KVIFE--------KLDLLDSDMKKHSFWALKWGASNDRL-LSHRLVATD 145 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTC---------CEEEE--------EECCSCTTGGGSCEEEEEEECCC-----CEEEEEEE
T ss_pred EEEEcCCCCEEEEEccCCcccc---------cccce--------eecccccccCCCcEEEEEEeeccCCC-CceEEEEEe
Confidence 9999999999999998776310 00000 11111111 4689999999 88 778 99999
Q ss_pred CCCeEEEEECCC------CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 205 SDAFARLYDRRM------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 205 ~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
.||.|++||+++ .+.+.-. ....+.........|.. .|++++|+|++ +|++++.||.|++||+.
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLTLNWS--------PTLELQGTVESPMTPSQ-FATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCCC--------CEEEEEEEECCSSSSCC-CCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CCCcEEEEeCCccccccccceeecc--------CcceeeeeeccccCCCC-CceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 999999999987 4433200 00011000000011223 59999999999 99999999999999987
Q ss_pred C
Q 004739 279 H 279 (732)
Q Consensus 279 ~ 279 (732)
+
T Consensus 216 ~ 216 (397)
T 1sq9_A 216 T 216 (397)
T ss_dssp T
T ss_pred C
Confidence 6
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=271.15 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=138.1
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC-CCc
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPH 130 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~ 130 (732)
+.+..+ .+|...|++++|+|+ +++|++|+.||.|++||+..... ..+..+.+|...|++++|+|+ +++
T Consensus 2 ~~~~~~-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 2 SMVVIA-NAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGT 70 (379)
T ss_dssp ---CCE-EECCCCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCS
T ss_pred CccEEe-cCCcccEEEEEEcCC--CCEEEEEECCCcEEEEecCCCcc--------eeeeEecCCCCcEEEEEeCCCCCCC
Confidence 344555 799999999999999 58999999999999999974332 336788899999999999874 258
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeE
Q 004739 131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFA 209 (732)
Q Consensus 131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v 209 (732)
+|++++.||.|++||+.+++. ..+.....|...|.+++|+|+. +.+|++++.|+.|
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i 127 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRW-----------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred EEEEeccCCEEEEEEcCCCce-----------------------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcE
Confidence 999999999999999987641 0122223466789999999984 5799999999999
Q ss_pred EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-------------CCCEEEEEecCCeEEEEE
Q 004739 210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-------------NGEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------~g~~l~~~~~dg~v~iwd 276 (732)
++||+++....... .+ .+|.. .|++++|+| ++++|++++.||.|++||
T Consensus 128 ~v~d~~~~~~~~~~-----------~~-------~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 188 (379)
T 3jrp_A 128 SVVEFKENGTTSPI-----------II-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188 (379)
T ss_dssp EEEECCTTSCCCEE-----------EE-------ECCTT-CEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred EEEecCCCCceeeE-----------Ee-------cCCCC-ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence 99999876432211 00 23444 599999999 699999999999999999
Q ss_pred CCC
Q 004739 277 VNH 279 (732)
Q Consensus 277 ~~~ 279 (732)
+.+
T Consensus 189 ~~~ 191 (379)
T 3jrp_A 189 YNS 191 (379)
T ss_dssp EET
T ss_pred ecC
Confidence 876
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-30 Score=267.39 Aligned_cols=300 Identities=14% Similarity=0.139 Sum_probs=239.0
Q ss_pred eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEE
Q 004739 53 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 132 (732)
Q Consensus 53 ~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 132 (732)
....+ .+|...|++++|+|+ +++|++++.||.|++||+.+. ..+..+.+|...|.+++|+|+ +++|
T Consensus 24 ~~~~l-~~h~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l 89 (369)
T 3zwl_B 24 KAIKL-TGHERPLTQVKYNKE--GDLLFSCSKDSSASVWYSLNG----------ERLGTLDGHTGTIWSIDVDCF-TKYC 89 (369)
T ss_dssp EEEEE-ECCSSCEEEEEECTT--SCEEEEEESSSCEEEEETTTC----------CEEEEECCCSSCEEEEEECTT-SSEE
T ss_pred ccEEE-EEeeceEEEEEEcCC--CCEEEEEeCCCEEEEEeCCCc----------hhhhhhhhcCCcEEEEEEcCC-CCEE
Confidence 34445 799999999999998 589999999999999999864 336788899999999999995 5899
Q ss_pred EEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-----C
Q 004739 133 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----A 207 (732)
Q Consensus 133 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----g 207 (732)
++++.||.|++||+.+++.. .. + .+...+.+++|+|+ +.+|++++.+ +
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~--------------~~--------~----~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCV--------------AT--------W----KSPVPVKRVEFSPC-GNYFLAILDNVMKNPG 142 (369)
T ss_dssp EEEETTTEEEEEETTTCCEE--------------EE--------E----ECSSCEEEEEECTT-SSEEEEEECCBTTBCC
T ss_pred EEEeCCCeEEEEECCCCcEE--------------EE--------e----ecCCCeEEEEEccC-CCEEEEecCCccCCCC
Confidence 99999999999999887621 00 0 13447999999999 7899999998 9
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc-cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 286 (732)
.|++||+........+...... .+..+ ..+. ...+.+++|+|++++|++++.||.|++||+.+..
T Consensus 143 ~i~~~d~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 208 (369)
T 3zwl_B 143 SINIYEIERDSATHELTKVSEE--PIHKI-------ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----- 208 (369)
T ss_dssp EEEEEEEEECTTTCCEEEECSS--CSEEE-------ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----
T ss_pred EEEEEEecCCccceeecccccc--eeeec-------cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----
Confidence 9999999877544333211100 00000 1111 1159999999999999999999999999987611
Q ss_pred eecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCC
Q 004739 287 YTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG 366 (732)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (732)
T Consensus 209 -------------------------------------------------------------------------------- 208 (369)
T 3zwl_B 209 -------------------------------------------------------------------------------- 208 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhh
Q 004739 367 IGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM 446 (732)
Q Consensus 367 v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 446 (732)
T Consensus 209 -------------------------------------------------------------------------------- 208 (369)
T 3zwl_B 209 -------------------------------------------------------------------------------- 208 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCCCChhhhhhhcccCCCCC
Q 004739 447 AEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPG 526 (732)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~ 526 (732)
T Consensus 209 -------------------------------------------------------------------------------- 208 (369)
T 3zwl_B 209 -------------------------------------------------------------------------------- 208 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeecccccC
Q 004739 527 DEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQ 606 (732)
Q Consensus 527 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s~ 606 (732)
+.+..+.+|...+.++. |+|
T Consensus 209 --------------------------------------------------------~~~~~~~~~~~~v~~~~----~~~ 228 (369)
T 3zwl_B 209 --------------------------------------------------------EYVDSIDLHEKSISDMQ----FSP 228 (369)
T ss_dssp --------------------------------------------------------EEEEEEECCSSCEEEEE----ECT
T ss_pred --------------------------------------------------------EeEEEEecCCCceeEEE----ECC
Confidence 01223344555544454 699
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCC--------------cEEEEcCCCCCC
Q 004739 607 RGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDN--------------TIKIWTPSASVP 672 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~--------------~i~vW~~~~~~~ 672 (732)
++++|++++.|+.|++||+.+++++..+. |...+++++|+|++++|++++.++ .|++||..++++
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 99999999999999999999999999998 889999999999999999999998 899999999999
Q ss_pred ccccCCCCCCCc-----hhHHHHHHHHHHHhhhccccccch
Q 004739 673 SIVSGGAAGPDT-----ADVLEAMESNQRKLSRNREHSLSY 708 (732)
Q Consensus 673 ~~~~~gh~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 708 (732)
+..+.+|.+++. ++...++....+...++|+.....
T Consensus 308 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 999999988874 455667777888889999986543
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-30 Score=262.63 Aligned_cols=167 Identities=12% Similarity=0.099 Sum_probs=130.7
Q ss_pred eCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe
Q 004739 47 SYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 125 (732)
Q Consensus 47 d~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 125 (732)
|..++ +....+ .+|.+.|++++| |+ +.+|++++.||.|++||+.+. .....+..|...|.+++|+
T Consensus 3 d~~~~~~~~~~l-~~h~~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~----------~~~~~~~~~~~~v~~~~~~ 68 (313)
T 3odt_A 3 DPFTGYQLSATL-KGHDQDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQ----------WLGTVVYTGQGFLNSVCYD 68 (313)
T ss_dssp --CCCCEEEEEE-CCCSSCEEEEEE-EE--TTEEEEEETTSEEEEEEESSS----------EEEEEEEECSSCEEEEEEE
T ss_pred CccccHHHHHHh-hCCCCCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCC----------EEEEEeecCCccEEEEEEC
Confidence 33344 566666 899999999999 77 489999999999999999753 2356778899999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC
Q 004739 126 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS 205 (732)
Q Consensus 126 p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~ 205 (732)
|+ +++|++++.||.|++|++...... ..+.....|...|.++.|+ +.+|++++.
T Consensus 69 ~~-~~~l~~~~~dg~i~~~~~~~~~~~----------------------~~~~~~~~~~~~i~~~~~~---~~~l~~~~~ 122 (313)
T 3odt_A 69 SE-KELLLFGGKDTMINGVPLFATSGE----------------------DPLYTLIGHQGNVCSLSFQ---DGVVISGSW 122 (313)
T ss_dssp TT-TTEEEEEETTSCEEEEETTCCTTS----------------------CC-CEECCCSSCEEEEEEE---TTEEEEEET
T ss_pred CC-CCEEEEecCCCeEEEEEeeecCCC----------------------CcccchhhcccCEEEEEec---CCEEEEEeC
Confidence 95 589999999999999999775421 0122234567789999994 569999999
Q ss_pred CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecCCeEEEEE
Q 004739 206 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD 276 (732)
Q Consensus 206 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~dg~v~iwd 276 (732)
|+.|++|| ..+.+..+ ..|.. .+.+++|+| ++++|++++.||.|++||
T Consensus 123 d~~i~~~d--~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 123 DKTAKVWK--EGSLVYNL--------------------QAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ 171 (313)
T ss_dssp TSEEEEEE--TTEEEEEE--------------------ECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEc--CCcEEEec--------------------ccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence 99999999 22222111 23444 599999998 999999999999999998
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=272.71 Aligned_cols=178 Identities=15% Similarity=0.229 Sum_probs=131.4
Q ss_pred CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec
Q 004739 50 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 126 (732)
Q Consensus 50 ~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p 126 (732)
..+.+..+..+|...|.+++|+|++ ..++++++. |+.|++||+.++... .....+|...|.+++|+|
T Consensus 6 ~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~s~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 6 KPQIIAHIQKGFNYTVFDCKWVPCS-AKFVTMGNFARGTGVIQLYEIQHGDLK---------LLREIEKAKPIKCGTFGA 75 (357)
T ss_dssp CCCEEEEEEEECSSCEEEEEECTTS-SEEEEEEC--CCCEEEEEEEECSSSEE---------EEEEEEESSCEEEEECTT
T ss_pred hhHHhhhhccCCCCceEEEEEcCCC-ceEEEecCccCCCcEEEEEeCCCCccc---------ceeeecccCcEEEEEEcC
Confidence 3445555557899999999999984 245556665 999999999864311 122337899999999999
Q ss_pred CC--CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE------ecCCCCC
Q 004739 127 GN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD------ISSTRPH 198 (732)
Q Consensus 127 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~------~~~~~~~ 198 (732)
++ +.+|++++.||.|++||+.+++.. +.....|...|.++. |+|+ +.
T Consensus 76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~~~~~~v~~~~~~~~~~~s~~-~~ 130 (357)
T 3i2n_A 76 TSLQQRYLATGDFGGNLHIWNLEAPEMP------------------------VYSVKGHKEIINAIDGIGGLGIGEG-AP 130 (357)
T ss_dssp CCTTTCCEEEEETTSCEEEECTTSCSSC------------------------SEEECCCSSCEEEEEEESGGGCC-C-CC
T ss_pred CCCCCceEEEecCCCeEEEEeCCCCCcc------------------------EEEEEecccceEEEeeccccccCCC-cc
Confidence 64 589999999999999999877521 112235666889985 4677 78
Q ss_pred EEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEE----EcCCCCEEEEEecCCeEE
Q 004739 199 LLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT----FSPNGEEVLLSYSGEHVY 273 (732)
Q Consensus 199 ~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~----~sp~g~~l~~~~~dg~v~ 273 (732)
+|++++.|+.|++||+++.+ .+..+... .++....+.+++ |+|++++|++++.||.|+
T Consensus 131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 131 EIVTGSRDGTVKVWDPRQKDDPVANMEPV-----------------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIK 193 (357)
T ss_dssp EEEEEETTSCEEEECTTSCSSCSEEECCC-----------------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEE
T ss_pred EEEEEeCCCeEEEEeCCCCCCcceecccc-----------------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEE
Confidence 99999999999999999875 33322110 222233588888 788999999999999999
Q ss_pred EEECCC
Q 004739 274 LMDVNH 279 (732)
Q Consensus 274 iwd~~~ 279 (732)
+||+++
T Consensus 194 i~d~~~ 199 (357)
T 3i2n_A 194 LFDLRN 199 (357)
T ss_dssp EEETTT
T ss_pred EEECcc
Confidence 999887
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-30 Score=271.44 Aligned_cols=270 Identities=14% Similarity=0.153 Sum_probs=213.2
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+++..+++|.++|++++|+|++++||+|+.||.|+|||+. +++.+..+ .+|...|++++|+|+.++.+|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 5678899999999999999999999999999999999998 55677777 79999999999987633489999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEE
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL 166 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (732)
|++||+.+... ..+..+..|...|.+++|+|++ +.+|++++.|+.|++||++.....
T Consensus 81 v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-------------- 138 (379)
T 3jrp_A 81 VLIWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT-------------- 138 (379)
T ss_dssp EEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC--------------
T ss_pred EEEEEcCCCce--------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce--------------
Confidence 99999986431 2367788899999999999962 589999999999999999876422
Q ss_pred eeccCCccccccCCCCCccceEEEEecCC------------CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccc
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------------~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
.......|...|.+++|+|. ++.+|++++.|+.|++||+++....... ..
T Consensus 139 ---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~ 200 (379)
T 3jrp_A 139 ---------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------ES 200 (379)
T ss_dssp ---------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE---------EE
T ss_pred ---------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee---------EE
Confidence 01111245668999999994 3789999999999999999876432111 11
Q ss_pred cccccccccCCCccccEEEEEEcCC---CCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCC
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI 311 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~---g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (732)
.+ .+|.. .|++++|+|+ +++|++++.||.|++||+.++....... ......+...+.+
T Consensus 201 ~~-------~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 201 TL-------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT-----------LLKEEKFPDVLWR 261 (379)
T ss_dssp EE-------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE-----------ESSSSCCSSCEEE
T ss_pred EE-------ecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceee-----------eeccccCCCcEEE
Confidence 11 34544 6999999999 8999999999999999999854321111 1122345667888
Q ss_pred CccCCCccccccccccCcchhhHHHHHHHhhhhcCC
Q 004739 312 HDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGK 347 (732)
Q Consensus 312 ~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~ 347 (732)
++|+|+|+.++ +++.|+.+++ |++..+.
T Consensus 262 ~~~s~~g~~l~---~~~~dg~i~i-----w~~~~~~ 289 (379)
T 3jrp_A 262 ASWSLSGNVLA---LSGGDNKVTL-----WKENLEG 289 (379)
T ss_dssp EEECSSSCCEE---EEESSSSEEE-----EEEEETT
T ss_pred EEEcCCCCEEE---EecCCCcEEE-----EeCCCCC
Confidence 99999999999 9999999999 9887544
No 98
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=4e-29 Score=259.94 Aligned_cols=211 Identities=10% Similarity=0.058 Sum_probs=139.8
Q ss_pred ccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCc
Q 004739 9 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAE 87 (732)
Q Consensus 9 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~ 87 (732)
.+++..+.+|..+|++++|+|||++||+|+.++ ++|||+.+++.+... .. ..+..+++.++. +.+ ++++.|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-EM--RHLSKVRMLHRT--NYVAFVTGVKEV 82 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-EC--SCCCEEEECTTS--SEEEEECSSTTE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-ec--CCeEEEEEcCCC--CEEEEEECCccE
Confidence 445667789999999999999999999998765 899999988776654 22 247788888874 555 67788899
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC-CCCCCCCCCCcccceEE
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNIL 166 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~ 166 (732)
|++||+.++. ++..+. |...|.++.++++ .++.+ .|+.|++||+.+. +...
T Consensus 83 v~iWd~~~~~----------~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~------------- 134 (355)
T 3vu4_A 83 VHIWDDVKKQ----------DVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRIT------------- 134 (355)
T ss_dssp EEEEETTTTE----------EEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSS-------------
T ss_pred EEEEECCCCc----------EEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeE-------------
Confidence 9999998642 245554 6779999999873 34444 4789999999887 3210
Q ss_pred eeccCCccccccCCCCCccceEEEEecCCCCCEEEE--EeCCCeEEEEECCCCCCCcccccCCCC---CCcccccccccc
Q 004739 167 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSP---PPCVNYFCPMHL 241 (732)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t--g~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 241 (732)
.... ....+++++ .++++ |+.||.|++||+++.+........... .+++..+
T Consensus 135 ------------~~~~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~----- 191 (355)
T 3vu4_A 135 ------------DDIR---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI----- 191 (355)
T ss_dssp ------------CCEE---EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEE-----
T ss_pred ------------Eecc---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-----
Confidence 0000 233455665 35655 588999999999976422111000000 0001222
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCe-EEEEECCC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNH 279 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~-v~iwd~~~ 279 (732)
.+|.. .|++++|+|+|++|++++.|++ |++||+.+
T Consensus 192 --~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 192 --KAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTED 227 (355)
T ss_dssp --CCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred --EccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 55665 6999999999999999999998 99999887
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=265.33 Aligned_cols=209 Identities=10% Similarity=0.129 Sum_probs=163.0
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---eEEEEcc------------------------------------
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIET------------------------------------ 59 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~---~~~~~~~------------------------------------ 59 (732)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4689999999999977766 46899999999988 5555521
Q ss_pred -----------------CCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeec--cccCce
Q 004739 60 -----------------GHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRV 119 (732)
Q Consensus 60 -----------------~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v 119 (732)
+|...|.+++|+|+ +++| ++++.||.|++||+....+ .++..+. .|...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRP 152 (450)
T ss_dssp -----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCc
Confidence 23347999999999 4775 8999999999999982112 2245554 567899
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCC--CC
Q 004739 120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RP 197 (732)
Q Consensus 120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~ 197 (732)
++++|+|++ ++|++++.+|.|++|++.+.+.... ......+|...|.+++|+|+ ++
T Consensus 153 ~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~ 210 (450)
T 2vdu_B 153 NAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGH 210 (450)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSC
T ss_pred eEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCC
Confidence 999999955 8999999999999999987763210 11123346678999999997 25
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004739 198 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 198 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~ 277 (732)
.+|++|+.|+.|++||+++.+.+..+. .+|.. .|++++|+ ++++|++++.|+.|++||+
T Consensus 211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 211 QFIITSDRDEHIKISHYPQCFIVDKWL-------------------FGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDW 269 (450)
T ss_dssp EEEEEEETTSCEEEEEESCTTCEEEEC-------------------CCCSS-CEEEEEEC-STTEEEEEESSSEEEEEET
T ss_pred cEEEEEcCCCcEEEEECCCCceeeeee-------------------cCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEEC
Confidence 699999999999999998775443310 34554 69999999 9999999999999999999
Q ss_pred CCCC
Q 004739 278 NHAG 281 (732)
Q Consensus 278 ~~~~ 281 (732)
.+++
T Consensus 270 ~~~~ 273 (450)
T 2vdu_B 270 KTGK 273 (450)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 9854
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.9e-29 Score=259.11 Aligned_cols=159 Identities=8% Similarity=0.070 Sum_probs=129.5
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc-EEEEEeC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH-VVWSASE 137 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s~ 137 (732)
.+|.+.|++++|+|+ +++|++++.|+.|++|++...... .+...+.+|...|.+++|+|+ ++ +|++++.
T Consensus 8 ~~h~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~ 77 (342)
T 1yfq_A 8 QAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTV 77 (342)
T ss_dssp SCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEES-SSEEEEEEET
T ss_pred cCCCCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCCCCcc-------ccceeeeecCCceEEEEECCC-CCcEEEEEcC
Confidence 689999999999998 589999999999999999864311 124556689999999999995 48 9999999
Q ss_pred CCcEEEEEC-CCCCCCCCCCCCCcccceEEeeccCCccccccCCCC--CccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 138 DGTLRQHDF-RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK--QTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 138 dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
||.|++||+ .+++. ..... |...|.+++|+| +.+|++++.|+.|++||+
T Consensus 78 dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~ 129 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF--------------------------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDP 129 (342)
T ss_dssp TSCEEEECSSSSSSE--------------------------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECH
T ss_pred CCeEEEEEeccCCce--------------------------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcc
Confidence 999999999 76641 11223 667899999999 579999999999999999
Q ss_pred CC---------CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 215 RM---------LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 215 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
++ .+.+..+ . +.. .|.+++|+|++ |++++.|+.|++||+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~--------------------~-~~~-~v~~~~~~~~~--l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 130 RNYGDGVIAVKNLNSNNT--------------------K-VKN-KIFTMDTNSSR--LIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp HHHTTBCEEEEESCSSSS--------------------S-SCC-CEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred cccccccccccCCeeeEE--------------------e-eCC-ceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence 86 4433222 1 223 59999999988 99999999999999887
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.2e-30 Score=272.57 Aligned_cols=168 Identities=10% Similarity=0.058 Sum_probs=127.5
Q ss_pred CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC
Q 004739 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 139 (732)
Q Consensus 60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg 139 (732)
.+.++|++++|+|+ +++|++|+.|+.|++||+.+... .++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 9 ~~~~~v~~~~~s~~--g~~l~~~~~d~~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~ 77 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQ--RTEFVTTTATNQVELYEQDGNGW--------KHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDR 77 (377)
T ss_dssp ECSSCCSCCEECSS--SSEEECCCSSSCBCEEEEETTEE--------EECCCBCCCSSCEEEEEECTTT-CCEEEEETTS
T ss_pred cCCCcEEEEEECCC--CCEEEEecCCCEEEEEEccCCce--------EEEEEEecCCceEEEEEEeCCC-CEEEEEeCCC
Confidence 46779999999998 58999999999999999986421 2357788999999999999954 8999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
.|++||+.+++.. ........|...|.+++|+|+ +++|++++.|+.|++||+++.+.
T Consensus 78 ~v~vwd~~~~~~~----------------------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 78 NAYVYEKRPDGTW----------------------KQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp SEEEC------CC----------------------CCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCEEECCC-----
T ss_pred eEEEEEcCCCCce----------------------eeeeEecccCCceEEEEECCC-CCEEEEEecCCeEEEEEECCccc
Confidence 9999999886511 011223356778999999998 78999999999999999987653
Q ss_pred CcccccCCCCCCccccccccccccCC-CccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 220 LTSCQKRMSPPPCVNYFCPMHLSEHG-RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.. +...+ .+ |.. .|++++|+|++++|++++.|+.|++||+..
T Consensus 135 ~~----------~~~~~-------~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 177 (377)
T 3dwl_C 135 WW----------VSKHL-------KRPLRS-TILSLDWHPNNVLLAAGCADRKAYVLSAYV 177 (377)
T ss_dssp CC----------CCEEE-------CSSCCS-CEEEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred ce----------eeeEe-------ecccCC-CeEEEEEcCCCCEEEEEeCCCEEEEEEEEe
Confidence 11 11111 22 444 699999999999999999999999999976
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=9.7e-30 Score=268.60 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=126.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEE----EccCCCcCeEEEEEec--------CCCCCEEEEEECCCcE
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVP--------ETSDELVVSGAGDAEV 88 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~----~~~~h~~~V~~~~~s~--------~~~g~~l~s~~~dg~i 88 (732)
.+....+++++.+||+|+.|++|+|||+.+++.... .+.+|.+.|++++|+| + +++|+||+.|++|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D~tv 168 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDDCTL 168 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETTSEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECCCeE
Confidence 333334445667899999999999999998865432 1368999999999998 4 5899999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+|||+.+. .++..+.+|...|.+++|+|+++++|++++.|++|++||+++++................+.
T Consensus 169 ~~Wd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 169 IIWRLTDE----------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp EEEEEETT----------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred EEEECCCC----------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99999753 22566778999999999999777799999999999999999887543222111111111111
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
.............++...+.++.|++.++..|++++.|+++++||+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 1111111222334677788999997434889999999999999999864
No 103
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2.3e-29 Score=248.66 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCccccccccccceeE-----eeeccccceeeecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecC
Q 004739 563 GSPSSSSQNDRIPYQPETVIDMKQRY-----VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGD 637 (732)
Q Consensus 563 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH 637 (732)
.+++++.+...++|++.+ .+.++.+ .||.... + .. +.++.++|+|+.|++|+|||+.+|+++++|.||
T Consensus 252 ~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~--l-sg---~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH 324 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRF--L-EG---DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPV 324 (356)
T ss_dssp ------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCE--E-EE---EEETTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred eeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCccee--E-cc---ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence 357776666677798876 5555554 3776542 2 12 334789999999999999999999999999999
Q ss_pred cccEE-EEeecCCCCeEEEecCCCcEEEEcC
Q 004739 638 EAVVN-CVQCHPFDCVVATSGIDNTIKIWTP 667 (732)
Q Consensus 638 ~~~V~-~v~fsp~~~~l~S~s~D~~i~vW~~ 667 (732)
.+.|. +|+|||||++||||+.|++|||||+
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88765 6999999999999999999999985
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=7.7e-28 Score=246.48 Aligned_cols=214 Identities=16% Similarity=0.221 Sum_probs=170.7
Q ss_pred hccccEeee--ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 8 RLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~--~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+.++++.++ +|...|++++|+|++++||+|+.||+|+|||+.+++++..+ .+|...+.++.+.+ ..+++++.+
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~~----~~l~s~~~~ 128 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWNS----YILSSGSRS 128 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEET----TEEEEEETT
T ss_pred CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecCC----CEEEEEecC
Confidence 455666554 67889999999999999999999999999999999999998 79999888876654 689999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+.+++|+..... ..+..+.+|...+..+.+.+++ ++|++++.|+.|++||+++++....
T Consensus 129 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~----------- 187 (318)
T 4ggc_A 129 GHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWV----------- 187 (318)
T ss_dssp SEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSC-----------
T ss_pred CceEeeecCCCc---------eeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCccccc-----------
Confidence 999999988643 3367788999999999999954 8999999999999999988763210
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEE--EEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL--VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~--tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.......+...|.++.++|++...+. +++.++.|++||.+........
T Consensus 188 ----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-------------------- 237 (318)
T 4ggc_A 188 ----------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-------------------- 237 (318)
T ss_dssp ----------CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--------------------
T ss_pred ----------ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--------------------
Confidence 11122345568899999998666654 5567899999999876533221
Q ss_pred CCCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~ 279 (732)
.+.. .+..+.|+|+++.+++++ .|+.|+|||+.+
T Consensus 238 -~~~~-~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 238 -DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp -ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred -ccee-eeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 1222 589999999999888765 689999999876
No 105
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=7.4e-28 Score=255.92 Aligned_cols=225 Identities=17% Similarity=0.218 Sum_probs=168.1
Q ss_pred ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC-CCCEEEEEECCCcEEEEEcC
Q 004739 17 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 17 ~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~-~g~~l~s~~~dg~i~vwd~~ 94 (732)
+|...|++++|+| ++++|++++.|+.|++||+.+++.+..+ .+...+.++.|+|.. ++.++++++.|+.|++||++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 6999999999999 7789999999999999999999998887 478889999999963 13599999999999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
++ .++..+.+|...|.+++|+|++..+|++++.||.|++||+++..........+... ...
T Consensus 175 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~ 235 (408)
T 4a11_B 175 SG----------SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---------KSQ 235 (408)
T ss_dssp SS----------CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---------SCC
T ss_pred Cc----------ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---------cce
Confidence 64 23678889999999999999776689999999999999998876332111111000 011
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
........|...|.+++|+|+ +.+|++++.|+.|++||+++.+........... . ... .+...
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~-~~~-~~~~~ 298 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN--------------N-SKK-GLKFT 298 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC--------------C-CSS-CCCCE
T ss_pred eeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccc--------------c-ccc-cceeE
Confidence 122233567789999999998 889999999999999999987654332111000 0 001 12222
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCC
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.....+..+++++.++.|++||+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp ECCSSSSCEEEEEETTEEEEEETTT
T ss_pred EecCCCceEEEEecCCEEEEEECcC
Confidence 2233445677778899999998876
No 106
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-29 Score=266.73 Aligned_cols=136 Identities=10% Similarity=-0.030 Sum_probs=103.2
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCCCCccccccccc--cceeE-eeeccccceeeecccccCCCCEEEEecCCCcEEEE
Q 004739 547 RRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVID--MKQRY-VGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIW 623 (732)
Q Consensus 547 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~i~iW 623 (732)
+|...|.+++||||| |++++.++..++|+..+... ..+++ .+|...+.++. |+ |++||+++ |++|++|
T Consensus 180 gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva----Fs--g~~LASa~-~~tIkLW 250 (588)
T 2j04_A 180 GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK----IV--DYKVVLTC-PGYVHKI 250 (588)
T ss_dssp TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE----EE--TTEEEEEC-SSEEEEE
T ss_pred cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE----EE--CCEEEEEe-CCeEEEE
Confidence 356778899999999 77777788888899877432 23567 48887765555 57 69999998 6999999
Q ss_pred EcCcccEEEEEecCcccEEEEee--cCCCCeEEEecCCCcEEEEcCCCCCCccccCCCCCCCchhHHHHHHHHHHHhhhc
Q 004739 624 EKQTGRLIKMLLGDEAVVNCVQC--HPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRN 701 (732)
Q Consensus 624 d~~tg~~~~~l~gH~~~V~~v~f--sp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh~~~~~~~~~~~~~~~~~~~~~~ 701 (732)
|+.+++......||.+.|++++| +|++..|+++++||+ |||.... +. +. + +...++. .++..+.
T Consensus 251 d~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---~~-~s----p---d~~l~a~--~d~~v~l 316 (588)
T 2j04_A 251 DLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---LH-VT----A---DNIIAPY--LEKKFKK 316 (588)
T ss_dssp ETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS---EE-EE----C---CCSSHHH--HHHHHHH
T ss_pred ECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc---EE-EC----C---CceEEEE--cCCEEEE
Confidence 99998885544499999999999 999999999999999 9999882 22 21 1 1112222 2778888
Q ss_pred cccc
Q 004739 702 REHS 705 (732)
Q Consensus 702 ~~~~ 705 (732)
|+..
T Consensus 317 W~~~ 320 (588)
T 2j04_A 317 WSTI 320 (588)
T ss_dssp TTTT
T ss_pred EECC
Confidence 8874
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=9.5e-29 Score=265.29 Aligned_cols=156 Identities=17% Similarity=0.301 Sum_probs=124.9
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED 138 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d 138 (732)
.+|...|++++| + +++|++|+.||.|++||+.+. +++..+.+|...|.+++| ++++|++|+.|
T Consensus 130 ~~~~~~v~~~~~--d--~~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~---~~~~l~sg~~d 192 (435)
T 1p22_A 130 SETSKGVYCLQY--D--DQKIVSGLRDNTIKIWDKNTL----------ECKRILTGHTGSVLCLQY---DERVIITGSSD 192 (435)
T ss_dssp CSSCCCEEEEEC--C--SSEEEEEESSSCEEEEESSSC----------CEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred cCCCCcEEEEEE--C--CCEEEEEeCCCeEEEEeCCCC----------eEEEEEcCCCCcEEEEEE---CCCEEEEEcCC
Confidence 357778999888 4 489999999999999999864 336788899999999999 34899999999
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 139 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 139 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
|.|++||+.+++. +.....|...|.+++|++ ..+++|+.||.|++||+++..
T Consensus 193 g~i~vwd~~~~~~-------------------------~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 193 STVRVWDVNTGEM-------------------------LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp SCEEEEESSSCCE-------------------------EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSS
T ss_pred CeEEEEECCCCcE-------------------------EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCC
Confidence 9999999988762 122234667899999974 499999999999999998765
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..... ..+ .+|.. .|.+++| ++++|++++.||.|++||+.+
T Consensus 245 ~~~~~----------~~~-------~~~~~-~v~~~~~--~~~~l~s~~~dg~i~vwd~~~ 285 (435)
T 1p22_A 245 DITLR----------RVL-------VGHRA-AVNVVDF--DDKYIVSASGDRTIKVWNTST 285 (435)
T ss_dssp CCEEE----------EEE-------CCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTT
T ss_pred Cceee----------eEe-------cCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCc
Confidence 43110 001 34544 5999999 788999999999999999877
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-29 Score=256.69 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=150.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC
Q 004739 27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 106 (732)
Q Consensus 27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 106 (732)
+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+...... .......
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~-~~~~~~~ 114 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQIT-ILDSKTN 114 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEE-EEETTTC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCceE-EeecCCc
Confidence 34578899999999999999999999988883 567888888885 99999999999998763100 0000001
Q ss_pred CCceee-ccccCceeEEEEec--CCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC
Q 004739 107 TPSALY-QCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ 183 (732)
Q Consensus 107 ~~~~~~-~~h~~~v~~l~~~p--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (732)
..+..+ .+|...|.+++|+| ++ ++|++++.||.|++||+++++.. .+ ....+
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~------------~~------------~~~~~ 169 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY------------IV------------HSAKS 169 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE------------EE------------ECCCS
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE------------EE------------EecCC
Confidence 112222 35678999999999 66 89999999999999999887621 00 01123
Q ss_pred ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC-cccccCCCCCCccccccccccccCC-CccccEEEEEEcCCCC
Q 004739 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHG-RSSLHLTHVTFSPNGE 261 (732)
Q Consensus 184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~sp~g~ 261 (732)
...+.+++|+|+ +.+|++|+.||.|++||+++.+.+ ..+ .+ |.. +|++++|+|+|.
T Consensus 170 ~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~--------------------~~~h~~-~v~~l~fs~~g~ 227 (343)
T 3lrv_A 170 DVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRF--------------------PVDEEA-KIKEVKFADNGY 227 (343)
T ss_dssp SCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEEC--------------------CCCTTS-CEEEEEECTTSS
T ss_pred CCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEE--------------------eccCCC-CEEEEEEeCCCC
Confidence 346899999998 889999999999999999987654 222 33 444 699999999999
Q ss_pred EEEEEecCCeEEEEECCCC
Q 004739 262 EVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~~ 280 (732)
+|++++ ++.|++||+++.
T Consensus 228 ~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 228 WMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp EEEEEE-SSBEEEEETTSS
T ss_pred EEEEEe-CCeEEEEEcCCC
Confidence 999999 559999999873
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.8e-27 Score=255.38 Aligned_cols=208 Identities=12% Similarity=0.063 Sum_probs=160.3
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc----cCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~----~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+.+..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++.+..+. .+|...|.+++|+|+ +.++++++.|
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQMQA 190 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEEGGG
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC--CEEEEEECCC
Confidence 444555544 456699999988888888889999999999998886431 478889999999998 5899999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
+.|++||+++. ..+..+..|...+.+++|+|++..++++++.|+.|++||+++++..
T Consensus 191 ~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~------------- 247 (433)
T 3bws_A 191 NAVHVFDLKTL----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI------------- 247 (433)
T ss_dssp TEEEEEETTTC----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------
T ss_pred CEEEEEECCCc----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-------------
Confidence 99999999863 2356777889999999999977555567778999999999876521
Q ss_pred EeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe--------CCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 166 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
.. .. ....+.+++|+|+ +++|++++ .|+.|++||+++++.+..+
T Consensus 248 -~~-----------~~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------- 299 (433)
T 3bws_A 248 -RK-----------TD-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------- 299 (433)
T ss_dssp -EE-----------CC-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------
T ss_pred -EE-----------ec-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------
Confidence 10 11 1225899999999 67888877 5889999999876433221
Q ss_pred ccccccCCCccccEEEEEEcCCCCEE-EEEecCCeEEEEECCC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYSGEHVYLMDVNH 279 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l-~~~~~dg~v~iwd~~~ 279 (732)
.+.. .+.+++|+|+++.+ ++++.++.|++||+.+
T Consensus 300 -------~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 300 -------GPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp -------EEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred -------cCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence 1222 48899999999866 5557899999999987
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=282.40 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=135.2
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeC
Q 004739 59 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASE 137 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~ 137 (732)
.+|.+.|++++|+|+ +++|++|+.||.|+|||+..... ..+..+.+|...|++++|+|+. +++|++|+.
T Consensus 6 ~gH~~~V~~l~~s~d--g~~latg~~dg~I~vwd~~~~~~--------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 6 NAHNELIHDAVLDYY--GKRLATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp --CCCCEEEECCCSS--SCCEEEEETTTEEEEEEEETTEE--------EEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred ccCcceeEEEEECCC--CCeEEEEECCCcEEEEecCCCCC--------ccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence 799999999999999 58999999999999999984332 3367888999999999999852 589999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC-CCEEEEEeCCCeEEEEECCC
Q 004739 138 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 138 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~tg~~dg~v~iwd~~~ 216 (732)
||.|++||+.+++. ..+.....|...|.+++|+|+. +.++++|+.||.|++||+++
T Consensus 76 Dg~I~vwd~~~~~~-----------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 76 DGKVLIWKEENGRW-----------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp TSCEEEEEEETTEE-----------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred CCeEEEEECCCCcc-----------------------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 99999999987531 0122234567799999999974 67999999999999999987
Q ss_pred CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-------------CCCEEEEEecCCeEEEEECCC
Q 004739 217 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-------------NGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-------------~g~~l~~~~~dg~v~iwd~~~ 279 (732)
....... .+ .+|.. .|++++|+| ++++|++|+.||.|++||+.+
T Consensus 133 ~~~~~~~-----------~~-------~~~~~-~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 133 NGTTSPI-----------II-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp SSCCCCE-----------EE-------ECCSS-CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred CCCccee-----------Ee-------ecCCC-ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence 6432111 00 33444 599999999 589999999999999999876
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-28 Score=282.13 Aligned_cols=268 Identities=13% Similarity=0.150 Sum_probs=210.2
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEE
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 89 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~ 89 (732)
+..+.+|.++|++++|+|+|++|++|+.||+|+|||+. +++.+..+ .+|.+.|++++|+|+.++++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 46789999999999999999999999999999999998 55677777 7999999999999874358999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+||+.++.. ..+..+.+|...|++++|+|++ ++++++++.||.|++||++++....
T Consensus 81 vwd~~~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~--------------- 137 (753)
T 3jro_A 81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--------------- 137 (753)
T ss_dssp EEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---------------
T ss_pred EEECCCCcc--------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---------------
Confidence 999986421 2367788899999999999962 5899999999999999998874220
Q ss_pred ccCCccccccCCCCCccceEEEEecCC------------CCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 236 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~------------~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 236 (732)
......|...|.++.|+|. ++.+|++|+.||.|++||+++....... ...+
T Consensus 138 --------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~---------~~~~ 200 (753)
T 3jro_A 138 --------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL---------ESTL 200 (753)
T ss_dssp --------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE---------EEEE
T ss_pred --------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee---------eeee
Confidence 1112345668999999994 3789999999999999999876432111 1111
Q ss_pred cccccccCCCccccEEEEEEcCC---CCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004739 237 CPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD 313 (732)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~sp~---g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (732)
.+|.. +|++++|+|+ +++|++++.||.|++||+.++...... .......+...+.+++
T Consensus 201 -------~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~-----------~~~~~~~~~~~v~~l~ 261 (753)
T 3jro_A 201 -------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKK-----------TLLKEEKFPDVLWRAS 261 (753)
T ss_dssp -------CCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBC-----------CBSSSSCCSSCCCCEE
T ss_pred -------cCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCccee-----------EEeccCCCCCceEEEE
Confidence 34555 6999999999 899999999999999999985421110 1113345677889999
Q ss_pred cCCCccccccccccCcchhhHHHHHHHhhhhcCC
Q 004739 314 FLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGK 347 (732)
Q Consensus 314 ~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~ 347 (732)
|+|+|..++ +++.|+.+++ |++..+.
T Consensus 262 ~spdg~~l~---s~s~Dg~I~v-----wd~~~~~ 287 (753)
T 3jro_A 262 WSLSGNVLA---LSGGDNKVTL-----WKENLEG 287 (753)
T ss_dssp ECTTTCCEE---EECSSSCEEC-----CBCCSSS
T ss_pred EcCCCCEEE---EEcCCCEEEE-----EecCCCC
Confidence 999999999 9999999999 9887544
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=5.5e-27 Score=247.90 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=140.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004739 32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 110 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 110 (732)
.++++++.|+.|++||+.+++.+..+ ..|. .+.+++|+|++ ++| ++++.|+.|++||+.+++ .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~----------~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATI-PVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNN----------VIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTE----------EEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEe-ecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCe----------EEE
Confidence 46888999999999999999999888 4554 58999999994 665 677789999999998642 245
Q ss_pred eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004739 111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 190 (732)
Q Consensus 111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 190 (732)
.+..+ ..+.+++|+|++..++++++.++.|++||+.+++.. ..+. +...+.++
T Consensus 69 ~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~--------------~~~~------------~~~~~~~~ 121 (391)
T 1l0q_A 69 TVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA--------------GTVK------------TGKSPLGL 121 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------EEEE------------CSSSEEEE
T ss_pred EEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEE--------------EEEe------------CCCCcceE
Confidence 55544 489999999977445566777899999999876521 1000 12257899
Q ss_pred EecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE-EEEec
Q 004739 191 DISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV-LLSYS 268 (732)
Q Consensus 191 ~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-~~~~~ 268 (732)
+|+|+ ++.| ++++.++.|++||+.+++.+..+ ..+. .+.+++|+|++++| ++++.
T Consensus 122 ~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~--~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 122 ALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETT
T ss_pred EECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE--------------------ecCC--CcceEEECCCCCEEEEEeCC
Confidence 99999 5655 78888999999999877544332 1122 37899999999988 56677
Q ss_pred CCeEEEEECCC
Q 004739 269 GEHVYLMDVNH 279 (732)
Q Consensus 269 dg~v~iwd~~~ 279 (732)
++.|++||+.+
T Consensus 179 ~~~v~~~d~~~ 189 (391)
T 1l0q_A 179 SMSISVIDTVT 189 (391)
T ss_dssp TTEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 89999999877
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=2.4e-27 Score=247.99 Aligned_cols=173 Identities=14% Similarity=0.188 Sum_probs=136.5
Q ss_pred EeCCCCeeEEEEccCCCcCeEEEEEecCC-CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEE
Q 004739 46 WSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 124 (732)
Q Consensus 46 Wd~~~~~~~~~~~~~h~~~V~~~~~s~~~-~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 124 (732)
|+....+.+..+ .+|.+.|++++|+|+. +|++|++|+.||.|++||+.+... .....+.+|...|++++|
T Consensus 24 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 24 DNHNPMKDIEVT-SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ--------TIPKAQQMHTGPVLDVCW 94 (368)
T ss_dssp CSSCTTCCEECS-SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------EEEEEEEECSSCEEEEEE
T ss_pred CCCCCcceeEec-cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------eeEEEeccccCCEEEEEE
Confidence 445556666666 7999999999999982 128999999999999999986321 123678889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe--cCCCCCEEEE
Q 004739 125 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLV 202 (732)
Q Consensus 125 ~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~t 202 (732)
+| ++++|++++.||.|++||+.+++.. ....|...|.+++| +|+ +.+|++
T Consensus 95 ~~-~~~~l~s~~~dg~v~iwd~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~-~~~l~~ 146 (368)
T 3mmy_A 95 SD-DGSKVFTASCDKTAKMWDLSSNQAI--------------------------QIAQHDAPVKTIHWIKAPN-YSCVMT 146 (368)
T ss_dssp CT-TSSEEEEEETTSEEEEEETTTTEEE--------------------------EEEECSSCEEEEEEEECSS-CEEEEE
T ss_pred Cc-CCCEEEEEcCCCcEEEEEcCCCCce--------------------------eeccccCceEEEEEEeCCC-CCEEEE
Confidence 99 4589999999999999999876521 01235668999999 887 789999
Q ss_pred EeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 203 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 203 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
++.|+.|++||+++.+.+..+ ..+. .+.++.+.+ ..+++++.++.+++|++..
T Consensus 147 ~~~dg~i~vwd~~~~~~~~~~--------------------~~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 147 GSWDKTLKFWDTRSSNPMMVL--------------------QLPE--RCYCADVIY--PMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp EETTSEEEEECSSCSSCSEEE--------------------ECSS--CEEEEEEET--TEEEEEEGGGCEEEEECSS
T ss_pred ccCCCcEEEEECCCCcEEEEE--------------------ecCC--CceEEEecC--CeeEEEeCCCcEEEEEecc
Confidence 999999999999987665443 1222 366666654 4789999999999999977
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=4.5e-27 Score=244.44 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=77.1
Q ss_pred ceeEeeeccccceeeecccccCCCCEEEEecCCCc-EEEEEcCcccEEEEEe-c-CcccEEEEeecCCCCeEEEecCCCc
Q 004739 585 KQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGR-WFIWEKQTGRLIKMLL-G-DEAVVNCVQCHPFDCVVATSGIDNT 661 (732)
Q Consensus 585 ~~~~~gh~~~~~~i~~~~f~s~dg~~lasgs~Dg~-i~iWd~~tg~~~~~l~-g-H~~~V~~v~fsp~~~~l~S~s~D~~ 661 (732)
++.+.+|...++++. |+|||++||||+.|++ |+|||+.+++++.++. | |...|++++|+|++++|+++|.|++
T Consensus 188 ~~~~~~h~~~v~~~~----~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVR----LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp CEEECCCSSCEEEEE----ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred cEEEEccCCceEEEE----ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 677889999977666 6999999999999999 9999999999999999 6 9999999999999999999999999
Q ss_pred EEEEcCCCCC
Q 004739 662 IKIWTPSASV 671 (732)
Q Consensus 662 i~vW~~~~~~ 671 (732)
|+|||+....
T Consensus 264 v~iw~~~~~~ 273 (355)
T 3vu4_A 264 LHVFEIFNDQ 273 (355)
T ss_dssp EEEEESSCCS
T ss_pred EEEEEccCCC
Confidence 9999998664
No 115
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=2e-27 Score=252.26 Aligned_cols=257 Identities=16% Similarity=0.197 Sum_probs=197.9
Q ss_pred cccEeeeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eeEEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 10 SQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~-------~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
+.+..+.+|.++|++++|+| ++++|++|+.||+|+|||+.++ +.+..+ .+|...|.+++|+|++ ..+|++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~-~~~l~s 149 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTA-QNVLLS 149 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSB-TTEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCC-CCEEEE
Confidence 34567889999999999999 9999999999999999999987 556777 7999999999999994 269999
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
++.|+.|++||+.++ .++..+ .+|...|.+++|+|+ +++|++++.||.|++||+++++..
T Consensus 150 ~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~------- 211 (402)
T 2aq5_A 150 AGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGTVV------- 211 (402)
T ss_dssp EETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEE-------
T ss_pred EcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCcee-------
Confidence 999999999999864 235667 789999999999995 489999999999999999886521
Q ss_pred cccceEEeeccCCccccccCCCCCcc-ceEEEEecCCCCCEEEEE---eCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~tg---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 235 (732)
..+ ...|.. .+.++.|+|+ +.+|++| +.|+.|++||+++.+.....
T Consensus 212 -------~~~----------~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~------------ 261 (402)
T 2aq5_A 212 -------AEK----------DRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSL------------ 261 (402)
T ss_dssp -------EEE----------ECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEE------------
T ss_pred -------eee----------ccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceE------------
Confidence 100 012222 4788999998 7889998 78999999999876531110
Q ss_pred ccccccccCCCccccEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCCC-cceeeecCCCCceeeeccCCCCccCCCCCCc
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGG-RAMRYTVGDASKIMSFTPTLNGLELQPPIHD 313 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (732)
. ...+.. .+.+++|+|++++|+++ +.||.|++||+.+++. ...+.. . .+...+.+++
T Consensus 262 ~------~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-------------~-~~~~~v~~~~ 320 (402)
T 2aq5_A 262 Q------ELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-------------F-SSKESQRGMG 320 (402)
T ss_dssp E------ECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-------------E-CCSSCCSEEE
T ss_pred E------eccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-------------c-ccCCcccceE
Confidence 0 011222 58999999999999755 4699999999998553 111111 1 1345778888
Q ss_pred cCCCccccccccccCcchhhHHHHHHHhhhhcCC
Q 004739 314 FLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGK 347 (732)
Q Consensus 314 ~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~ 347 (732)
|+|++..++ + .++.+++ |.+..+.
T Consensus 321 ~sp~~~~~~---s--~~~~~~~-----~~l~~~~ 344 (402)
T 2aq5_A 321 YMPKRGLEV---N--KCEIARF-----YKLHERK 344 (402)
T ss_dssp ECCGGGSCG---G--GTEEEEE-----EEEETTE
T ss_pred Eecccccce---e--cceeEEE-----EEcCCCc
Confidence 899988887 3 4557777 8877554
No 116
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=1.4e-27 Score=244.10 Aligned_cols=222 Identities=15% Similarity=0.178 Sum_probs=174.5
Q ss_pred ccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC
Q 004739 11 QERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA 86 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg 86 (732)
.+..|++|.++|++++|+| ++++||+|+.|++|+|||+.+++ .+..+ .+|...|.+++|+|+..+.+|++|+.|+
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~ 127 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDG 127 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence 4678999999999999986 48999999999999999998874 55566 7899999999999984458999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCC----------------CcEEEEEeCCCcEEEEECCCCC
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----------------PHVVWSASEDGTLRQHDFRQGS 150 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~----------------~~~l~s~s~dg~i~vwd~~~~~ 150 (732)
+|++||++..... .....+.+|...|.+++|+|+. +.+|++++.|+.|++||++...
T Consensus 128 ~i~lwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 200 (316)
T 3bg1_A 128 AISLLTYTGEGQW-------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200 (316)
T ss_dssp CEEEEEECSSSCE-------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred CEEEEecCCCCCc-------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence 9999999853210 1134567899999999999963 3689999999999999986542
Q ss_pred CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC---CCEEEEEeCCCeEEEEECCCCCCCcccccCC
Q 004739 151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---PHLLLVGGSDAFARLYDRRMLPPLTSCQKRM 227 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~ 227 (732)
. ...+....+|...|.+++|+|++ +.+|++|+.|++|++||+++......
T Consensus 201 ~----------------------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~----- 253 (316)
T 3bg1_A 201 Q----------------------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW----- 253 (316)
T ss_dssp C----------------------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCC-----
T ss_pred c----------------------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccch-----
Confidence 1 01122345677899999999983 37999999999999999976321000
Q ss_pred CCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 228 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
....+ .+|.. .|++++|+|++++|++++.|+.|++|+...
T Consensus 254 ----~~~~~-------~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 254 ----SPKLL-------HKFND-VVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ----BCCEE-------EECSS-CEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ----hhhhh-------hcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 00000 22333 699999999999999999999999999864
No 117
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=2.5e-27 Score=247.18 Aligned_cols=206 Identities=13% Similarity=0.119 Sum_probs=162.5
Q ss_pred cCCceeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 18 HQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg--~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
+...+.+++|||||++||++ +.|++|+|||+.+++++..+ .|...|.+++|+|+ |++|++++.+ .+++|+..+
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~~ 206 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTD--GKVVAYITGS-SLEVISTVT 206 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTT--SSEEEEECSS-CEEEEETTT
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccC--CceEEeccce-eEEEEEecc
Confidence 45568999999999998755 47899999999999999888 47788999999999 5899998855 566666664
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
+... ......+|...|.+++|+|++ .++++++.|+ .+++|++...... .
T Consensus 207 ~~~~--------~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------~----- 259 (365)
T 4h5i_A 207 GSCI--------ARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTS-------------V----- 259 (365)
T ss_dssp CCEE--------EEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEE-------------E-----
T ss_pred Ccce--------eeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceec-------------c-----
Confidence 3221 123456788999999999955 8888888877 5788887665310 0
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
.......+|...|++++|+|+ +++||+|+.|++|+|||+++++.+..+. .+|.. +|
T Consensus 260 ---~~~~~~~~~~~~V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~~~~~~~~-------------------~gH~~-~V 315 (365)
T 4h5i_A 260 ---LRSKQVTNRFKGITSMDVDMK-GELAVLASNDNSIALVKLKDLSMSKIFK-------------------QAHSF-AI 315 (365)
T ss_dssp ---EEEEEEESSCSCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEET-------------------TSSSS-CE
T ss_pred ---eeeeeecCCCCCeEeEEECCC-CCceEEEcCCCEEEEEECCCCcEEEEec-------------------CcccC-CE
Confidence 011122345668999999999 8899999999999999999876554321 55666 69
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
++++|+|||++|++++.|++|+||++..
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999999965
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=2.1e-27 Score=254.10 Aligned_cols=273 Identities=15% Similarity=0.216 Sum_probs=207.3
Q ss_pred EeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CeeEEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 13 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS----------RKLLHSIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~----------~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
..+.+|.+.|++++|+|+ +.+||+++.||.|+|||+.+ .+.+..+ .+|...|++++|+|++ ..+|++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNL-NGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTS-TTEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCC-CCeEEE
Confidence 445689999999999997 68999999999999999986 5667777 7999999999999985 239999
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
|+.||.|++|++....... ....+...+.+|...|.+++|+|+++.+|++++.||.|++||+++.....
T Consensus 200 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------- 268 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------- 268 (430)
T ss_dssp ECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS--------
T ss_pred EeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc--------
Confidence 9999999999998632210 00122456778999999999999777999999999999999999764110
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMH 240 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (732)
.+.....|...|.+++|+|++..+|++|+.||.|++||+++.. ++..+
T Consensus 269 --------------~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~----------------- 317 (430)
T 2xyi_A 269 --------------PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF----------------- 317 (430)
T ss_dssp --------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-----------------
T ss_pred --------------ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-----------------
Confidence 1111124566899999999966689999999999999999743 22222
Q ss_pred cccCCCccccEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCCcceeee-cCCCCceeeeccCCCCccCCCCCCccCCCc
Q 004739 241 LSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQPPIHDFLQTN 318 (732)
Q Consensus 241 ~~~~~~~~~~i~~l~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (732)
.+|.. .|++++|+|+++ +|++++.||.|+|||+........... ...+...+ ....+|...+..++|+|++
T Consensus 318 ---~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 318 ---ESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL---FIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp ---ECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEE---EECCCCSSCEEEEEECSSS
T ss_pred ---ecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceE---EEcCCCCCCceEEEECCCC
Confidence 33444 699999999995 689999999999999987432211000 00001111 1234667778889999999
Q ss_pred c-ccccccccCcchhhHHHHHHHhhhh
Q 004739 319 I-RVRGEVATGLGKCRMLVEIARNSLE 344 (732)
Q Consensus 319 ~-~~~~~~~~~~d~~~~l~~~~~~~~~ 344 (732)
. .++ +++.|+.+++ |.+.
T Consensus 391 ~~~l~---s~s~dg~i~i-----w~~~ 409 (430)
T 2xyi_A 391 PWIIC---SVSEDNIMQV-----WQMA 409 (430)
T ss_dssp TTEEE---EEETTSEEEE-----EEEC
T ss_pred CCEEE---EEECCCCEEE-----eEcc
Confidence 8 777 9999999999 7765
No 119
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=8.7e-27 Score=251.09 Aligned_cols=290 Identities=12% Similarity=0.131 Sum_probs=195.8
Q ss_pred cccEeeeccC------------CceeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeeE---------------------
Q 004739 10 SQERELEGHQ------------GCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKLL--------------------- 54 (732)
Q Consensus 10 ~~~~~l~~h~------------~~V~~l~~s~dg--~~lasg~~dg~i~vWd~~~~~~~--------------------- 54 (732)
++...+.+|. .+|++++|+|++ .+|++++.|++|++||+.+++..
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 3577899998 899999999998 79999999999999998765432
Q ss_pred ------------------EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce------
Q 004739 55 ------------------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA------ 110 (732)
Q Consensus 55 ------------------~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------ 110 (732)
..+..+|...|.+++|+|+ +++|++| .|+.|++||++.... .+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~~ 219 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD--YETYLSA-DDLRINLWHLEITDR---------SFNIVDIKP 219 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT--SSEEEEE-CSSEEEEEETTEEEE---------EEEEEECCC
T ss_pred eEeccccchheeeeccceEEeccCCCcceEEEEEcCC--CCEEEEe-CCCeEEEEECCCCCc---------eeeeeeccc
Confidence 2333689999999999998 5899998 799999999984211 112
Q ss_pred -eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 111 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 111 -~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
.+.+|...|++++|+|+++++|++++.||.|++||+++++..... ...+...... ........|...|.+
T Consensus 220 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~v~~ 290 (447)
T 3dw8_B 220 ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH--------SKLFEEPEDP-SNRSFFSEIISSISD 290 (447)
T ss_dssp SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT--------CEEECCC------CCHHHHHTTCEEE
T ss_pred ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce--------eeEeccCCCc-cccccccccCceEEE
Confidence 466899999999999976689999999999999999987642100 0000000000 000000112238999
Q ss_pred EEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004739 190 CDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 190 i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
++|+|+ +.+|++++. +.|++||+++ .+.+..+.........+... . ....-..+..++|+|++++|++++.
T Consensus 291 ~~~s~~-g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~-----~-~~~~i~~~~~~~~s~~~~~l~s~s~ 362 (447)
T 3dw8_B 291 VKFSHS-GRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL-----Y-ENDCIFDKFECCWNGSDSVVMTGSY 362 (447)
T ss_dssp EEECTT-SSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH-----H-HTSGGGCCCCEEECTTSSEEEEECS
T ss_pred EEECCC-CCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc-----c-cccccccceEEEECCCCCEEEEecc
Confidence 999998 889999998 9999999987 65554442110000000000 0 0000001345999999999999999
Q ss_pred CCeEEEEECCCCCCcceeeecCCCCceeeec-----------------cCCCCccCCCCCCccCCCccccccccccCcch
Q 004739 269 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-----------------PTLNGLELQPPIHDFLQTNIRVRGEVATGLGK 331 (732)
Q Consensus 269 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 331 (732)
||.|++||+.+++... +..+....+..... ...-.+...+..++|+|+|..++ .++.++
T Consensus 363 dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la---~~~~~~ 438 (447)
T 3dw8_B 363 NNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA---VATTNN 438 (447)
T ss_dssp TTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE---EECSSC
T ss_pred CCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE---EEecce
Confidence 9999999999865432 22222111110000 01113345678899999999999 776665
Q ss_pred h
Q 004739 332 C 332 (732)
Q Consensus 332 ~ 332 (732)
.
T Consensus 439 ~ 439 (447)
T 3dw8_B 439 L 439 (447)
T ss_dssp E
T ss_pred e
Confidence 3
No 120
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=5.1e-28 Score=287.79 Aligned_cols=469 Identities=10% Similarity=-0.003 Sum_probs=297.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCe-------EEEEEecCCCC
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-------FCTKFVPETSD 76 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V-------~~~~~s~~~~g 76 (732)
...+.|.+|...|.+++|||||++||.++.+ ..|++||+.+++ ...+ ..|...+ .+++|+|++
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~~~~~~~~SpDg-- 118 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRMFTDVAGFDPDG-- 118 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEECSEEEEECTTC--
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCcccccccccccccCCCCC--
Confidence 3467788999999999999999999988643 479999998887 4555 6888888 999999994
Q ss_pred CEEEEEECC------CcEEEEEcCCCCCCCCCCCC---------------------------------------CCCcee
Q 004739 77 ELVVSGAGD------AEVRLFNLSRFSGRGLDDNA---------------------------------------ITPSAL 111 (732)
Q Consensus 77 ~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~---------------------------------------~~~~~~ 111 (732)
+++++++.+ ..|.+|++..+....+.... ......
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~ 198 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK 198 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence 777777754 35777777643211110000 001123
Q ss_pred eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE
Q 004739 112 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 191 (732)
Q Consensus 112 ~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 191 (732)
+.+|...+.++.|+++ .++++++.|+.+++|.+...... ...+. .+. .+...+
T Consensus 199 l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~---------------------~~~l~---~~~-~~~~~~ 251 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD---------------------LRKHT---SFT-DYYPRH 251 (1045)
T ss_dssp EECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS---------------------CEECC---CCC-SSCEEE
T ss_pred CcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCc---------------------ceEec---CCC-Ccceee
Confidence 4567888899999884 67778888899999986542110 00111 111 345668
Q ss_pred ecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc-CCCCEEEEEecCC
Q 004739 192 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGE 270 (732)
Q Consensus 192 ~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg 270 (732)
|+|+ ++.|+.+ .++.|++||+... .+..+....... ......+.. .+.+++|+ |+|++|+.++ ++
T Consensus 252 ~SpD-G~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~---------~~~~~~~~~-~v~~~~~S~pdG~~la~~~-~~ 317 (1045)
T 1k32_A 252 LNTD-GRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLES---------PEDRIISIP-SKFAEDFSPLDGDLIAFVS-RG 317 (1045)
T ss_dssp EEES-SSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCB---------CCSEEEECG-GGGEEEEEECGGGCEEEEE-TT
T ss_pred EcCC-CCEEEEE-eCCEEEEecCCce-EeeeeccCcccc---------ccccccccc-ccceeeecCCCCCEEEEEE-cC
Confidence 9999 6777777 4899999998432 222221100000 000001122 48899999 9999888887 88
Q ss_pred eEEEEECCCCCCcceeeecCCCCceeeeccCCCCccC-CCCCCccCCCccccccccccCcchhhH-HHHHHHhhhhcCCC
Q 004739 271 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL-QPPIHDFLQTNIRVRGEVATGLGKCRM-LVEIARNSLEEGKH 348 (732)
Q Consensus 271 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~~-l~~~~~~~~~~~~~ 348 (732)
.|++|++.++.... ...+.. .+..++|+ ||+.++ .++.+..+. + |++..+..
T Consensus 318 ~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~s-dg~~l~---~~s~~~~l~~~-----~d~~~~~~ 371 (1045)
T 1k32_A 318 QAFIQDVSGTYVLK-----------------VPEPLRIRYVRRGGD-TKVAFI---HGTREGDFLGI-----YDYRTGKA 371 (1045)
T ss_dssp EEEEECTTSSBEEE-----------------CSCCSCEEEEEECSS-SEEEEE---EEETTEEEEEE-----EETTTCCE
T ss_pred EEEEEcCCCCceEE-----------------ccCCCcceEEeeeEc-CCCeEE---EEECCCceEEE-----EECCCCCc
Confidence 99999988743111 111222 34567788 888887 444443333 3 34433321
Q ss_pred chhhhhHhHHHHhcccCCCCCccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHH
Q 004739 349 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE 428 (732)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (732)
. .+.++...
T Consensus 372 ~---------~l~~~~~~-------------------------------------------------------------- 380 (1045)
T 1k32_A 372 E---------KFEENLGN-------------------------------------------------------------- 380 (1045)
T ss_dssp E---------ECCCCCCS--------------------------------------------------------------
T ss_pred e---------EecCCccc--------------------------------------------------------------
Confidence 0 00011000
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccccccccc--CCCCCCCCCCCC
Q 004739 429 ALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEA--NSDASQDGPRSE 506 (732)
Q Consensus 429 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~s~d~~~~~ 506 (732)
+...+|+|+ ++.|+.++.++.+++|+. .+|++..+.. .|... .++|||||
T Consensus 381 -----~~~~~~SpD-----------G~~la~~~~~~~v~~~d~------~tg~~~~~~~--~~~~~v~~~~~SpDG---- 432 (1045)
T 1k32_A 381 -----VFAMGVDRN-----------GKFAVVANDRFEIMTVDL------ETGKPTVIER--SREAMITDFTISDNS---- 432 (1045)
T ss_dssp -----EEEEEECTT-----------SSEEEEEETTSEEEEEET------TTCCEEEEEE--CSSSCCCCEEECTTS----
T ss_pred -----eeeeEECCC-----------CCEEEEECCCCeEEEEEC------CCCceEEecc--CCCCCccceEECCCC----
Confidence 223456666 455566666677777763 3444433221 23332 78899999
Q ss_pred CCCCChhhhhhhcccCCCCCCCC----------cccccccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 004739 507 REDSDYDEEVEVDFHTSVPGDEG----------RDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPY 576 (732)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~s~~~d----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 576 (732)
+.++++..+ ..+++|++.+.....+..+...+..++|+|||++|++++.......|
T Consensus 433 --------------~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 433 --------------RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp --------------CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred --------------CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 766665443 48999998765577788888888999999999999887644333333
Q ss_pred c------------------------------------------cccccccceeEeeeccccceeeecccccCCCCEEEE-
Q 004739 577 Q------------------------------------------PETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS- 613 (732)
Q Consensus 577 ~------------------------------------------~~~~~~~~~~~~gh~~~~~~i~~~~f~s~dg~~las- 613 (732)
. ..+....+..+.+|...+. .+. ++|||+++++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~---~~~-~s~dg~~~~~~ 574 (1045)
T 1k32_A 499 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR---MII-PLESSILIYSV 574 (1045)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE---EEE-ECSSEEEEEEC
T ss_pred chhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChh---heE-EcCCCeEEEEe
Confidence 2 1111112334445555533 344 5999998886
Q ss_pred ------------ecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCC
Q 004739 614 ------------GSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV 671 (732)
Q Consensus 614 ------------gs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~ 671 (732)
...+.+|.+||+.+++.. .|. ..|.+++|||||++|++++.| .|++||+.+++
T Consensus 575 ~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 575 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 223567899999998853 444 668999999999999999876 79999999887
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.5e-26 Score=250.16 Aligned_cols=205 Identities=12% Similarity=0.109 Sum_probs=149.4
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc--CCCCCCCCCC
Q 004739 26 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD 103 (732)
Q Consensus 26 ~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~--~~~~~~~~~~ 103 (732)
+|+|++.++++++.|++|.+||..+++++.++..++. +.+++|+|+ |++|++++.|++|.+||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence 4889999999999999999999999999999843554 889999999 599999999999999999 542
Q ss_pred CCCCCceeeccccCceeEEEEec----CCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 104 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 104 ~~~~~~~~~~~h~~~v~~l~~~p----~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
.++..+. +...+..++|+| ++ +++++++ .+++|.+||..+.+.. . .+..... ...
T Consensus 213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~-~i~~~g~---~~~ 272 (543)
T 1nir_A 213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------Q-IVSTRGM---TVD 272 (543)
T ss_dssp ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------E-EEECCEE---CSS
T ss_pred ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------e-eecccCc---ccC
Confidence 2245555 456789999999 77 6666666 5899999999877632 1 1110000 000
Q ss_pred CCCCC-ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 179 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 179 ~~~~~-~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
....| ...+.++.++|+++.++++...++.|.+||..+.+.+... . ..+ ...+..++|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~-----------~--------i~~-~~~~~~~~~s 332 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-----------S--------IGA-APFLHDGGWD 332 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE-----------E--------EEC-CSSCCCEEEC
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE-----------E--------ecc-CcCccCceEC
Confidence 00001 1268899999987777888888999999999876433210 0 001 1136779999
Q ss_pred CCCCEEEEEe-cCCeEEEEECCCCC
Q 004739 258 PNGEEVLLSY-SGEHVYLMDVNHAG 281 (732)
Q Consensus 258 p~g~~l~~~~-~dg~v~iwd~~~~~ 281 (732)
|+|++|++++ .+++|.+||+.+++
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCeEEEEECCCCe
Confidence 9999877665 48999999999854
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=6.1e-25 Score=232.16 Aligned_cols=208 Identities=7% Similarity=0.085 Sum_probs=157.9
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEE-EEEC
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAG 84 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~-s~~~ 84 (732)
.+.++++.+.+|. .+.+++|+|+|++| ++++.|++|++||+.+++.+..+ ..+. .+.+++|+|++ ++|+ +++.
T Consensus 20 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~v~~~~~spdg--~~l~~~~~~ 94 (391)
T 1l0q_A 20 TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVSPDG--KQVYVTNMA 94 (391)
T ss_dssp TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTTS--SEEEEEETT
T ss_pred CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC-CccceEECCCC--CEEEEEECC
Confidence 3456677777665 58999999999976 67778999999999999999888 3343 89999999994 7664 5556
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
++.|++||+.++. .+..+. +...+.+++|+|++..++++++.++.|++||+.+++..
T Consensus 95 ~~~v~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~------------ 151 (391)
T 1l0q_A 95 SSTLSVIDTTSNT----------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI------------ 151 (391)
T ss_dssp TTEEEEEETTTTE----------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------------
T ss_pred CCEEEEEECCCCe----------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE------------
Confidence 7999999998642 234444 34578999999976445578888999999999876521
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
..+. . ...+.+++|+|+ ++.| ++++.++.|++||+++.+.+..+
T Consensus 152 --~~~~-----------~-~~~~~~~~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------------- 196 (391)
T 1l0q_A 152 --NTVS-----------V-GRSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTV-------------------- 196 (391)
T ss_dssp --EEEE-----------C-CSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------
T ss_pred --EEEe-----------c-CCCcceEEECCC-CCEEEEEeCCCCEEEEEECCCCeEEEEE--------------------
Confidence 1110 1 125689999999 5555 67788999999999876543222
Q ss_pred CCCccccEEEEEEcCCCCEEEEEe---cCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~---~dg~v~iwd~~~ 279 (732)
. +.. .+.+++|+|++++|++++ .++.|++||+.+
T Consensus 197 ~-~~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 197 K-VEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp E-CSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred e-cCC-CccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 1 112 488999999999999988 689999999877
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.5e-26 Score=244.83 Aligned_cols=174 Identities=13% Similarity=0.044 Sum_probs=120.8
Q ss_pred CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC---CCCC-C-CCC-------------------------------
Q 004739 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS---GRGL-D-DNA------------------------------- 105 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~---~~~~-~-~~~------------------------------- 105 (732)
..++.+++|+|+ |++|+++ .++.|++||+.++. .... . ...
T Consensus 4 ~~p~~~v~~s~d--g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 4 IHPLQNLLTSRD--GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp ECCCCEEEECSS--SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred cccEEEEEecCC--CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 357899999999 4766655 57899999998754 1000 0 000
Q ss_pred -----------CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccceEEeeccCC
Q 004739 106 -----------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 106 -----------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
..+.....+|...|++++|+|++..++++++.||.|++||+. +++.. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~----- 144 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-----------KLRK----- 144 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-----------EEEE-----
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-----------eeee-----
Confidence 000111234666899999999663335899999999999998 54421 1110
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
...+...|.+++|+|+ +.+|++|+.+|.|++|++.+.+.... +...+ .+|.. .|+
T Consensus 145 -------~~~~~~~v~~~~~sp~-~~~l~~~~~~g~v~~~~~~~~~~~~~---------~~~~~-------~~h~~-~v~ 199 (450)
T 2vdu_B 145 -------RFCFSKRPNAISIAED-DTTVIIADKFGDVYSIDINSIPEEKF---------TQEPI-------LGHVS-MLT 199 (450)
T ss_dssp -------EEECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTSCCCSSC---------CCCCS-------EECSS-CEE
T ss_pred -------cccCCCCceEEEEcCC-CCEEEEEeCCCcEEEEecCCcccccc---------cceee-------ecccC-ceE
Confidence 0123457999999999 78999999999999999987654320 00111 34544 699
Q ss_pred EEEEcCC---CCEEEEEecCCeEEEEECCC
Q 004739 253 HVTFSPN---GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 253 ~l~~sp~---g~~l~~~~~dg~v~iwd~~~ 279 (732)
+++|+|+ +++|++++.|+.|++||+.+
T Consensus 200 ~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 200 DVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred EEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 9999999 99999999999999999876
No 124
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=2.9e-26 Score=272.73 Aligned_cols=429 Identities=9% Similarity=0.018 Sum_probs=286.2
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLF 91 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vw 91 (732)
+...+...+||| +.||.++. +.|++|++.+++.. .+ ..|...+.+++|||+ |++|+.++.+ ..|++|
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~-~l-t~~~~~v~~~~~SPD--G~~la~~s~~~~~~~~~~i~~~ 85 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFY 85 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE-Ee-eeCCCcccCeEECCC--CCEEEEEEeeccCCCCCeEEEE
Confidence 567889999995 57887775 68999999887654 44 589999999999999 5889887643 379999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCce-------eEEEEecCCCcEEEEEeCC------CcEEEEECCCCCCCCCCCCC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRV-------KKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSS 158 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~ 158 (732)
++..+. ...+..|...+ ..++|+|++ +++++++.+ ..|.+|++..++........
T Consensus 86 d~~~g~-----------~~~lt~~~~~~~~~~~~~~~~~~SpDg-~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~ 153 (1045)
T 1k32_A 86 NGENGE-----------IKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP 153 (1045)
T ss_dssp ETTTTE-----------EEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS
T ss_pred ECCCCC-----------eEEcccCCCcccccccccccccCCCCC-EEEEEECCcCCCcccceEEEEECCCCCeEEecCCC
Confidence 987532 45677788777 899999977 577777754 35888888665422111000
Q ss_pred Cc--------------------------ccceEEee-ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004739 159 HQ--------------------------ECRNILLD-LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 211 (732)
Q Consensus 159 ~~--------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i 211 (732)
.. .....+|. ...+.... ..+|...+.++.|+++ .++++++.|+.++|
T Consensus 154 ~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~---l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l 228 (1045)
T 1k32_A 154 ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK---IVDMSTHVSSPVIVGH--RIYFITDIDGFGQI 228 (1045)
T ss_dssp CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE---EECCSSCCEEEEEETT--EEEEEECTTSSCEE
T ss_pred cceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE---CcCCCCcccceEEeCC--EEEEEEeccCceEE
Confidence 00 00011111 11111111 2467778899999986 47778888899999
Q ss_pred EECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceeeecC
Q 004739 212 YDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 290 (732)
Q Consensus 212 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 290 (732)
|.+.. +.....+ ..+. .+..++|+|+|++|+.+ .++.|++|++.. .....+.. .
T Consensus 229 ~~~~~~g~~~~~l--------------------~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~~l~~-~ 283 (1045)
T 1k32_A 229 YSTDLDGKDLRKH--------------------TSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDT-EKIEKIEI-G 283 (1045)
T ss_dssp EEEETTSCSCEEC--------------------CCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTT-CCEEECCC-C
T ss_pred EEEeCCCCcceEe--------------------cCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCc-eEeeeecc-C
Confidence 98753 2111111 1122 25567999999988887 589999999943 22211111 0
Q ss_pred CCCceeeeccCCCCccCCCCCCccC-CCccccccccccCcchhhHHHHHHHhhhhcCCCchhhhhHhHHHHhcccCCCCC
Q 004739 291 DASKIMSFTPTLNGLELQPPIHDFL-QTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP 369 (732)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 369 (732)
.... .+....+...+..++|+ |||+.++ .++ ++.+.+ |+...+.
T Consensus 284 ~~~~----~~~~~~~~~~v~~~~~S~pdG~~la---~~~-~~~i~~-----~~~~~~~---------------------- 328 (1045)
T 1k32_A 284 DLES----PEDRIISIPSKFAEDFSPLDGDLIA---FVS-RGQAFI-----QDVSGTY---------------------- 328 (1045)
T ss_dssp CCCB----CCSEEEECGGGGEEEEEECGGGCEE---EEE-TTEEEE-----ECTTSSB----------------------
T ss_pred cccc----cccccccccccceeeecCCCCCEEE---EEE-cCEEEE-----EcCCCCc----------------------
Confidence 0000 01111233456778899 9999887 332 222222 2221111
Q ss_pred ccchhhhhhHHHHhhccccccchhhhHHhHHHHhcCCCccchhhHHHHHHHHHhCChHHHHHHHHHHhccCCCChhhHHH
Q 004739 370 MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 449 (732)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 449 (732)
T Consensus 329 -------------------------------------------------------------------------------- 328 (1045)
T 1k32_A 329 -------------------------------------------------------------------------------- 328 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccccccccc---cCCCCCCCCCCCCCCCCChhhhhhhcccCCCCC
Q 004739 450 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSE---ANSDASQDGPRSEREDSDYDEEVEVDFHTSVPG 526 (732)
Q Consensus 450 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~s~ 526 (732)
... +..+.. ....|+ || +.++..
T Consensus 329 --------------------------------~~~---~~~~~~~~~~~~~~s-dg------------------~~l~~~ 354 (1045)
T 1k32_A 329 --------------------------------VLK---VPEPLRIRYVRRGGD-TK------------------VAFIHG 354 (1045)
T ss_dssp --------------------------------EEE---CSCCSCEEEEEECSS-SE------------------EEEEEE
T ss_pred --------------------------------eEE---ccCCCcceEEeeeEc-CC------------------CeEEEE
Confidence 000 000111 134555 55 555555
Q ss_pred CCCcccc-cccccCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceeeeccccc
Q 004739 527 DEGRDVE-ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLG 605 (732)
Q Consensus 527 ~~d~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~f~s 605 (732)
+.+..+. +|++.+.....+..+...+..++|||||++||+++.+++..+|+..+ .+....+.+|...+..+. ||
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v~~~~----~S 429 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMITDFT----IS 429 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCCEE----EC
T ss_pred ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCccceE----EC
Confidence 5555566 66776665556667778899999999999999987666666788876 566667778888766555 69
Q ss_pred CCCCEEEEecCCC----------cEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCC
Q 004739 606 QRGDYIASGSDDG----------RWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS 670 (732)
Q Consensus 606 ~dg~~lasgs~Dg----------~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~ 670 (732)
|||++||+++.++ .|++||+.+++ +..+.+|...+.+++|+|||++|++++.++..++|+....
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 9999999987754 99999999988 7889999999999999999999999999999999987643
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-26 Score=236.93 Aligned_cols=152 Identities=6% Similarity=-0.054 Sum_probs=114.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCC
Q 004739 76 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA 155 (732)
Q Consensus 76 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 155 (732)
+.+|++|+.||+|++||+.++. .+..+. ...|.++.|+|. +++++.|+.|++|+....
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~----------~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~------ 105 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSK----------TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ------ 105 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSS----------CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTE------
T ss_pred CCEEEEECCCCcEEEEECCCCc----------EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCc------
Confidence 4799999999999999998642 244444 466888888884 889999999999998652
Q ss_pred CCCCcccceEEeeccCCccccccCCCCCccceEEEEecC--CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcc
Q 004739 156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV 233 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 233 (732)
..++++.++..... ....|...|.+++|+| + +.+|++++.||.|++||+++++.+...
T Consensus 106 --------~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~---------- 165 (343)
T 3lrv_A 106 --------ITILDSKTNKVLRE-IEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVH---------- 165 (343)
T ss_dssp --------EEEEETTTCCEEEE-EECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEE----------
T ss_pred --------eEEeecCCcceeEE-eecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEE----------
Confidence 23344443331111 1123456899999999 8 789999999999999999987543221
Q ss_pred ccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 234 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+....|++++|+|+|++|++|+.||.|++||+++
T Consensus 166 ----------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 166 ----------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp ----------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred ----------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 122233599999999999999999999999999987
No 126
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=3.8e-25 Score=229.26 Aligned_cols=249 Identities=14% Similarity=0.157 Sum_probs=178.2
Q ss_pred cccEeeeccCCceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCC---------eeEEEEccCCCcCeEEEEEecCCCCCE
Q 004739 10 SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR---------KLLHSIETGHSANVFCTKFVPETSDEL 78 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~---------~~~~~~~~~h~~~V~~~~~s~~~~g~~ 78 (732)
+....+.+|..+|++++|+| ++++|++|+.||.|++||+.++ +.+..+ ..|...|.+++|+|+..+.+
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 126 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLK 126 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcE
Confidence 46677889999999999999 6999999999999999999887 556667 78999999999999822389
Q ss_pred EEEEECCCcEEEEEcCCCCCCCCCCC---CCCCceeeccccCceeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCCCC
Q 004739 79 VVSGAGDAEVRLFNLSRFSGRGLDDN---AITPSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCP 153 (732)
Q Consensus 79 l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~~p~--~~~~l~s~s~dg~i~vwd~~~~~~~~ 153 (732)
|++++.|+.|++||+++......... ..........|...+.+++|+|+ ++.++++++.|+.+.+|+...++.
T Consensus 127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 204 (351)
T 3f3f_A 127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-- 204 (351)
T ss_dssp EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--
T ss_pred EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--
Confidence 99999999999999987532210000 00000112267889999999996 368999999999998888766541
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCC---CEEEEEeCCCeEEEEECCCCCCCcccccCCCCC
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP 230 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~ 230 (732)
..+.....|...|++++|+|+++ .+|++|+.||.|++||++...............
T Consensus 205 ---------------------~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 205 ---------------------HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp ---------------------EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------
T ss_pred ---------------------eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 11233445777999999999942 799999999999999998753221111000000
Q ss_pred Cc----------------------cc---ccc-ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004739 231 PC----------------------VN---YFC-PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 231 ~~----------------------~~---~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
.. .. ... .......+|.. .|++++|+|++++|++++.||.|++|++.+++..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSS-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccc-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 00 00 000 00000134555 6999999999999999999999999999986543
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=4.9e-25 Score=217.81 Aligned_cols=202 Identities=12% Similarity=0.064 Sum_probs=143.1
Q ss_pred ceeEEEEcCC----CCEEEEEeC--------------------CCcEEEEeC-CCCeeEEEEccCCCcCeEEEEEec-CC
Q 004739 21 CVNAISWNSK----GSLLISGSD--------------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ET 74 (732)
Q Consensus 21 ~V~~l~~s~d----g~~lasg~~--------------------dg~i~vWd~-~~~~~~~~~~~~h~~~V~~~~~s~-~~ 74 (732)
.|++++|+|| ++++++++. |+.|++|++ .+++.+..+ .+|...+..++|+| ++
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEET
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCC
Confidence 5667777778 777777653 888888888 447777766 57888888888888 33
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecccc---CceeEEEEecCCCcEE------------EEEeCCC
Q 004739 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDG 139 (732)
Q Consensus 75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l------------~s~s~dg 139 (732)
++.+|++++.|++|+|||+++++ +++++.+|. ..+.+++|+|++ .++ ++|+.|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk----------~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~ 260 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQ----------LLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVF 260 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCC----------EEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCE
T ss_pred CCceEEEecCCCcEEEEECCCCc----------EEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCc
Confidence 36899999999999999999753 367777643 467788999955 654 6788999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC
Q 004739 140 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP 219 (732)
Q Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~ 219 (732)
+|++||..+++.. ..+ .+..+.+|...+.+..++ +.++++|+.|++|+|||+.+++.
T Consensus 261 tIklWd~~tgk~l-----------~v~---------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 261 QLIVINPKTTLSV-----------GVM---------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEEETTTTEEE-----------EEE---------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEECCCCEEE-----------EEE---------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcE
Confidence 9999999877522 000 011122343344444444 56899999999999999999876
Q ss_pred CcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 004739 220 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~ 277 (732)
+.++ .+|....+..++|+|+|++|++|+.|++|+|||+
T Consensus 318 l~tL--------------------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALL--------------------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEE--------------------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEe--------------------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5554 5565544556999999999999999999999986
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.1e-23 Score=225.73 Aligned_cols=204 Identities=9% Similarity=0.105 Sum_probs=144.6
Q ss_pred cCCceeEEE---EcCCCCEEEEEe--------------CCC--cEEEEeCCCC--eeEEEEccCCCcCeEEEEEecCCCC
Q 004739 18 HQGCVNAIS---WNSKGSLLISGS--------------DDT--HINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSD 76 (732)
Q Consensus 18 h~~~V~~l~---~s~dg~~lasg~--------------~dg--~i~vWd~~~~--~~~~~~~~~h~~~V~~~~~s~~~~g 76 (732)
....+..++ |+|+++.++..+ .++ .|.+||..++ +.+..+ ..+ ..+.+++|+|+ +
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~-~~~~~~~~s~~--~ 134 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF-KTG-FQPKSVRFIDN--T 134 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE-ECS-SCBCCCEESSS--S
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE-cCC-CCceEEEEeCC--C
Confidence 456778888 899887665432 223 4444455434 555555 333 45669999995 5
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCC
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG 156 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~ 156 (732)
.++++++.++.|++||+.++.... ......+.+|...|.+++|+| ++.++++++.|+.|++||+.+++..
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~---- 204 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVR-----LSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYK---- 204 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEE-----ECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEE----
T ss_pred eEEEEeCCCCeEEEEECCCCeEee-----ecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEE----
Confidence 788888889999999998643211 011114568889999999988 4589999999999999999876521
Q ss_pred CCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCcccc
Q 004739 157 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 235 (732)
.....+...+.+++|+|+ +..+ ++++.|+.|++||+++++.+..+
T Consensus 205 ---------------------~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~------------ 250 (433)
T 3bws_A 205 ---------------------ATVDLTGKWSKILLYDPI-RDLVYCSNWISEDISVIDRKTKLEIRKT------------ 250 (433)
T ss_dssp ---------------------EEEECSSSSEEEEEEETT-TTEEEEEETTTTEEEEEETTTTEEEEEC------------
T ss_pred ---------------------EEEcCCCCCeeEEEEcCC-CCEEEEEecCCCcEEEEECCCCcEEEEe------------
Confidence 111134457899999999 5555 56668999999999876543322
Q ss_pred ccccccccCCCccccEEEEEEcCCCCEEEEEe--------cCCeEEEEECCC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--------SGEHVYLMDVNH 279 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~--------~dg~v~iwd~~~ 279 (732)
..+. .+.+++|+|+|++|++++ .||.|++||+.+
T Consensus 251 --------~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 251 --------DKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp --------CCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred --------cCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 1122 489999999999999988 477888888876
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=7.3e-25 Score=231.19 Aligned_cols=238 Identities=11% Similarity=0.129 Sum_probs=156.3
Q ss_pred cEeeeccCCceeEEEEcC--------CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 12 ERELEGHQGCVNAISWNS--------KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~--------dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
+..+.||.+.|++++|+| |+++||||+.|++|+|||+.++..+..+ .+|...|.+++|+|+. +.+|++++
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~-~~~~~~v~~v~~~p~~-~~~l~~~~ 206 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG-YPLSSPGISVQFRPSN-PNQLIVGE 206 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE-EECSSCEEEEEEETTE-EEEEEEEE
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee-cCCCCCcEEEEECCCC-CceEEecC
Confidence 445789999999999998 8899999999999999999988887777 5888999999999984 35899999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCC---------------CCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNA---------------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~---------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
.|++|++||++++......... ........+|...+.++.|.+.++..|++++.|+.+++||+..
T Consensus 207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence 9999999999875432110000 0011233578889999999855668999999999999999988
Q ss_pred CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC
Q 004739 149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 228 (732)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~ 228 (732)
++................+ . ........+...+..+.+.+.++.++++|+.||.|++||+.+++.+..+
T Consensus 287 ~~~~~~l~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~----- 355 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNL-L-----PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP----- 355 (393)
T ss_dssp -----------------CC-S-----CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----
T ss_pred CCCCceEeeecCccccEEE-c-----cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----
Confidence 7643221111000000000 0 0000011112223333333443556777888999999999987654332
Q ss_pred CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+|.. +|++++|+|+|++|++++.+| +.+|.+..
T Consensus 356 ---------------~~~~~-~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 356 ---------------IQLGM-PIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp ---------------EECSS-CEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred ---------------cCCCC-cEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 23434 699999999999999998665 66666543
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=5e-24 Score=226.13 Aligned_cols=199 Identities=11% Similarity=0.082 Sum_probs=144.4
Q ss_pred CCceeEEEEcCCCC-EEEEEe----CCC----cEEEEeC--CCCeeE--EEEccCCCcCeEEEEEecC--------C---
Q 004739 19 QGCVNAISWNSKGS-LLISGS----DDT----HINVWSY--SSRKLL--HSIETGHSANVFCTKFVPE--------T--- 74 (732)
Q Consensus 19 ~~~V~~l~~s~dg~-~lasg~----~dg----~i~vWd~--~~~~~~--~~~~~~h~~~V~~~~~s~~--------~--- 74 (732)
...|...+|++.|. ++++|+ .|| +|+|||+ .+++++ ..+ .+|...+..+++++. +
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY-KVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE-EcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34778888988875 666876 467 8999999 888877 335 688888888877751 0
Q ss_pred -CCCEEEEEECC------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---cEEEE
Q 004739 75 -SDELVVSGAGD------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQH 144 (732)
Q Consensus 75 -~g~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~vw 144 (732)
.+..++.++.+ +.|++||+... ....+.+|...+.+++|+|++ +.|++++.++ .|++|
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-----------~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-----------NQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC-----------SCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC-----------CCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEE
Confidence 02566666554 79999999742 256778899999999999965 7888888775 89999
Q ss_pred ECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCe--EEEEECCCCCCCc
Q 004739 145 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAF--ARLYDRRMLPPLT 221 (732)
Q Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~--v~iwd~~~~~~~~ 221 (732)
|+.+++.. .+ ..+...+.+++|+|+ ++.|+ +++.++. |++||+.+++..
T Consensus 209 d~~tg~~~-----------------------~l---~~~~~~~~~~~~spd-g~~la~~~~~~g~~~i~~~d~~~~~~~- 260 (415)
T 2hqs_A 209 TLANGAVR-----------------------QV---ASFPRHNGAPAFSPD-GSKLAFALSKTGSLNLYVMDLASGQIR- 260 (415)
T ss_dssp ETTTCCEE-----------------------EE---ECCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred ECCCCcEE-----------------------Ee---ecCCCcccCEEEcCC-CCEEEEEEecCCCceEEEEECCCCCEE-
Confidence 99887521 11 123347899999999 67666 6666654 999999876431
Q ss_pred ccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC--eEEEEECCC
Q 004739 222 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--HVYLMDVNH 279 (732)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg--~v~iwd~~~ 279 (732)
.+ ..+.. .+.+++|+|+|++|+.++. ++ .|++||+.+
T Consensus 261 ~l--------------------~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 261 QV--------------------TDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp EC--------------------CCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred eC--------------------cCCCC-cccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 11 22333 5899999999999988886 44 566667665
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.1e-23 Score=242.24 Aligned_cols=219 Identities=9% Similarity=0.011 Sum_probs=149.3
Q ss_pred CCceeEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCeeEEEEccCCCc------------------------CeEEE
Q 004739 19 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHSA------------------------NVFCT 68 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~-dg-----~i~vWd~~~~~~~~~~~~~h~~------------------------~V~~~ 68 (732)
...|.+++|||||++|++++. |+ .|++||+.+++....+ ..+.. .|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 567999999999999999998 88 8999999999877666 34332 38899
Q ss_pred EEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 69 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 69 ~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
+|+|+ |++|++++. +.|++||+.++... ....+..|...+..++|+|++ ++|+.++. +.|++||+.+
T Consensus 115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~~--------~~~~l~~~~~~~~~~~~SPDG-~~la~~~~-~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD--AQRLLFPLG-GELYLYDLKQEGKA--------AVRQLTHGEGFATDAKLSPKG-GFVSFIRG-RNLWVIDLAS 181 (741)
T ss_dssp EECTT--SSEEEEEET-TEEEEEESSSCSTT--------SCCBCCCSSSCEEEEEECTTS-SEEEEEET-TEEEEEETTT
T ss_pred EECCC--CCEEEEEeC-CcEEEEECCCCCcc--------eEEEcccCCcccccccCCCCC-CEEEEEeC-CcEEEEecCC
Confidence 99999 589998886 99999999864100 134566677889999999965 78877774 6899999987
Q ss_pred CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC---------------------
Q 004739 149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------------------- 207 (732)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg--------------------- 207 (732)
++........... ... +....+. ......+.++.|+|+ +++|++++.|+
T Consensus 182 g~~~~~~~~~~~~---~~~----g~~~~v~--~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~ 251 (741)
T 2ecf_A 182 GRQMQLTADGSTT---IGN----GIAEFVA--DEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ 251 (741)
T ss_dssp TEEEECCCCCCSS---EEE----SCCCHHH--HHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred CCEEEeccCCccc---eec----cccceee--eeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence 6522100000000 000 0000000 000012467999999 77888887665
Q ss_pred ------------eEEEEECCC-CCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-----C
Q 004739 208 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G 269 (732)
Q Consensus 208 ------------~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-----d 269 (732)
.|++||+.+ ++...... . ..+.. .+..++| |||++|+.++. +
T Consensus 252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~-------------~-----~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 252 RYPAAGDANVQVKLGVISPAEQAQTQWIDL-------------G-----KEQDI-YLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp ECCBTTSCCCEEEEEEECSSTTCCCEEECC-------------C-----SCSSE-EEEEEEE-EETTEEEEEEEETTSSE
T ss_pred ecCCCCCCCCeeEEEEEECCCCCceEEecC-------------C-----CCcce-EEEEEEe-CCCCEEEEEEecccCCe
Confidence 788899887 64321110 0 11323 5899999 99999988764 5
Q ss_pred CeEEEEECCCCC
Q 004739 270 EHVYLMDVNHAG 281 (732)
Q Consensus 270 g~v~iwd~~~~~ 281 (732)
..|++||+.+++
T Consensus 312 ~~i~~~d~~~g~ 323 (741)
T 2ecf_A 312 LDLVEVTLASNQ 323 (741)
T ss_dssp EEEEEEETTTCC
T ss_pred EEEEEEECCCCc
Confidence 679999988743
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=7.8e-22 Score=215.67 Aligned_cols=215 Identities=11% Similarity=0.148 Sum_probs=154.3
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeeEEEEccCCCcCeEEEEEec----CCCCCEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVP----ETSDELVV 80 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~----~~~g~~l~ 80 (732)
.+.+++.++..+.. +..++|+|||++|++++.|++|++||+ .+++++.++ . +...+..++|+| + |++++
T Consensus 167 ~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~sp~~~~d--g~~l~ 241 (543)
T 1nir_A 167 DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVESSKFKGYE--DRYTI 241 (543)
T ss_dssp TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEECCSTTCT--TTEEE
T ss_pred CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEeCCCcCCC--CCEEE
Confidence 35567777873333 889999999999999999999999999 889998888 3 455689999999 8 58888
Q ss_pred EEEC-CCcEEEEEcCCCCCCCCCCCCCCCceeecc----------ccC-ceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 81 SGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 81 s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
+++. +++|.+||..+.+ ++..+.. |.. .+.++.++|+++.++++...++.|.+||+.+
T Consensus 242 v~~~~~~~v~v~D~~t~~----------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 242 AGAYWPPQFAIMDGETLE----------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp EEEEESSEEEEEETTTCC----------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred EEEccCCeEEEEeccccc----------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 8874 8999999988642 2344332 333 7889999998888888999999999999987
Q ss_pred CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCCCCcccccCC
Q 004739 149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRM 227 (732)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~ 227 (732)
.+.+ .+..+. +...+.++.|+|+ +++|+ ++..+++|.+||+.+++.+..+...
T Consensus 312 ~~~l------------~~~~i~------------~~~~~~~~~~spd-g~~l~va~~~~~~v~v~D~~tg~l~~~i~~g- 365 (543)
T 1nir_A 312 IDNL------------TVTSIG------------AAPFLHDGGWDSS-HRYFMTAANNSNKVAVIDSKDRRLSALVDVG- 365 (543)
T ss_dssp SSSC------------EEEEEE------------CCSSCCCEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred CCcc------------eeEEec------------cCcCccCceECCC-CCEEEEEecCCCeEEEEECCCCeEEEeeccC-
Confidence 6522 000000 1224667899999 66555 4556899999999988654433210
Q ss_pred CCCCccccccccccccCCCccccEEEEEEcCC-CCEEEEEe-cCCeEEEEECCC
Q 004739 228 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNH 279 (732)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~-~dg~v~iwd~~~ 279 (732)
...|.+. ...+ ++|+ +..++++. .|++|.+||+.+
T Consensus 366 ---------------~~ph~g~-g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 366 ---------------KTPHPGR-GANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp ---------------SSBCCTT-CEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ---------------CCCCCCC-Cccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 0113221 2223 5787 55556654 589999999987
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=6.6e-22 Score=209.75 Aligned_cols=203 Identities=9% Similarity=0.055 Sum_probs=150.4
Q ss_pred EeeeccCCceeEEEEcC--------------CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEec
Q 004739 13 RELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVP 72 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~--------------dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~ 72 (732)
..+.+|...+..+++++ .+..++.++.+ +.|++||+.. .....+ .+|...|.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l-~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVV-HRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEE-EEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEE-eCCCCcceeeEEcC
Confidence 55888888888888775 25667666654 7999999874 445566 57999999999999
Q ss_pred CCCCCEEEEEECCC---cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc--EEEEECC
Q 004739 73 ETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFR 147 (732)
Q Consensus 73 ~~~g~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~--i~vwd~~ 147 (732)
+ |++|++++.++ .|++||+.++. ...+..|...+.+++|+|++..++++++.++. |++||+.
T Consensus 189 d--g~~la~~s~~~~~~~i~~~d~~tg~-----------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 189 D--GSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp T--SSEEEEEECTTSSCEEEEEETTTCC-----------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred C--CCEEEEEEecCCCcEEEEEECCCCc-----------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence 9 58999999875 99999998643 34566788899999999976334447777665 9999998
Q ss_pred CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CC--eEEEEECCCCCCCcccc
Q 004739 148 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQ 224 (732)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~ 224 (732)
+++.. ....+...+.+++|+|+ +++|++++. ++ .|++||+.+++.. .+
T Consensus 256 ~~~~~--------------------------~l~~~~~~~~~~~~spd-g~~l~~~s~~~g~~~i~~~d~~~~~~~-~l- 306 (415)
T 2hqs_A 256 SGQIR--------------------------QVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAPQ-RI- 306 (415)
T ss_dssp TCCEE--------------------------ECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCCE-EC-
T ss_pred CCCEE--------------------------eCcCCCCcccceEECCC-CCEEEEEECCCCCcEEEEEECCCCCEE-EE-
Confidence 76511 11234457899999999 778887775 44 6788898875421 11
Q ss_pred cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---CeEEEEECCC
Q 004739 225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH 279 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d---g~v~iwd~~~ 279 (732)
..+.. .+.+++|+|+|++|+.++.+ ..|++||+.+
T Consensus 307 -------------------~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 307 -------------------TWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp -------------------CCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred -------------------ecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 11222 48899999999999988874 5788888876
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.7e-22 Score=231.56 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=146.7
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCc---CeEEEEEecCCCCCEEEEEECC---------Cc
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AE 87 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~---~V~~~~~s~~~~g~~l~s~~~d---------g~ 87 (732)
..+.+++|+|||+++++ +.||+|++||+.+++....+ ..|.. .|.+++|+|+ |++|++++.+ +.
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceee
Confidence 34778999999998876 78999999999999887777 56654 4999999999 5899998774 77
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
|.+||+.++... .+....+|...+..++|+|++ +.|+.++. +.|++||+.+++............ ++.
T Consensus 93 i~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--~~~ 160 (723)
T 1xfd_A 93 YVLSKIPHGDPQ--------SLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--IYN 160 (723)
T ss_dssp EEEEESSSCCCE--------ECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTT--EEE
T ss_pred EEEEECCCCceE--------eccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCc--eEC
Confidence 889999875321 122333455568899999965 77777775 789999998875321000000000 000
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC----------------------------------eEEEEE
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYD 213 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg----------------------------------~v~iwd 213 (732)
... ..+.. ......+.+++|+|+ ++.|++++.|+ .|++||
T Consensus 161 g~~----~~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d 234 (723)
T 1xfd_A 161 GLS----DWLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (723)
T ss_dssp EEC----CHHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred ccc----ceeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence 000 00000 000013478999999 78888887543 788888
Q ss_pred CCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC----CeEEEEECCCCC
Q 004739 214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHAG 281 (732)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d----g~v~iwd~~~~~ 281 (732)
+.+++....+... ... ..+ ...+..++|+|||++|++.+.. ..|++||+.+++
T Consensus 235 ~~~~~~~~~l~~~------------~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 235 LNGPTHDLEMMPP------------DDP--RMR-EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp SSSSCCCEECCCC------------CCG--GGS-SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred CCCCceeEEeeCC------------ccC--CCc-cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 8776532222100 000 111 2258999999999988776543 579999988753
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1e-21 Score=224.51 Aligned_cols=221 Identities=11% Similarity=0.030 Sum_probs=132.8
Q ss_pred hhhhccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE-EEEccCCC-----------------cCeE
Q 004739 5 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVF 66 (732)
Q Consensus 5 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~-~~~~~~h~-----------------~~V~ 66 (732)
++...+....+..+ .+..+.|. |..+++++.|+ | +||+.+++.+ ..+ ..|. ..|.
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~ 85 (706)
T 2z3z_A 13 LMPGGKEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSF 85 (706)
T ss_dssp -----------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCE
T ss_pred ccCCcccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCce
Confidence 34444455555544 46667888 66777777788 8 9999999873 333 2332 4699
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004739 67 CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 146 (732)
Q Consensus 67 ~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 146 (732)
+++|+|+ +.++++ .++.|++||+.++. ...+..+...+.+++|+|++ +.|+++ .++.|++||+
T Consensus 86 ~~~~spd--~~~~~~--~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~ 148 (706)
T 2z3z_A 86 RTLDAGR--GLVVLF--TQGGLVGFDMLARK-----------VTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARG 148 (706)
T ss_dssp EEEETTT--TEEEEE--ETTEEEEEETTTTE-----------EEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEEC
T ss_pred eEEECCC--CeEEEE--ECCEEEEEECCCCc-----------eEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEec
Confidence 9999998 244444 35999999998632 34445567778999999965 777774 6799999999
Q ss_pred CC-----CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-----------------
Q 004739 147 RQ-----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG----------------- 204 (732)
Q Consensus 147 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~----------------- 204 (732)
.+ ++........... ...... ....+...+.++.|+|+ +++|++++
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~---~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~ 216 (706)
T 2z3z_A 149 GKLGEGMSRAIAVTIDGTET---LVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPL 216 (706)
T ss_dssp BCTTSCCCCCEESCSCCBTT---EEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSS
T ss_pred CcccccCCCcEEeccCCCCC---eEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCC
Confidence 87 5532111100000 000000 00011123578999999 78888887
Q ss_pred ----------------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec
Q 004739 205 ----------------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 205 ----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
.+..|++||+.+++...... ...+.. .+.+++|+|||++|++++.
T Consensus 217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~------------------~~~~~~-~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 217 EAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT------------------GEPKEK-FLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp SCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC------------------CSCTTC-EEEEEEECTTSSEEEEEEE
T ss_pred CCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc------------------CCCCce-eEeeEEEECCCCEEEEEEe
Confidence 45679999998764221100 012222 5899999999999999887
Q ss_pred CC-----eEEEEECCCC
Q 004739 269 GE-----HVYLMDVNHA 280 (732)
Q Consensus 269 dg-----~v~iwd~~~~ 280 (732)
++ .|++||+.++
T Consensus 278 ~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETG 294 (706)
T ss_dssp CTTSCEEEEEEEETTTC
T ss_pred CCCCCeeEEEEEECCCC
Confidence 75 8999998874
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.9e-20 Score=193.56 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=127.6
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-CcEEEEEcCCCCCCCCCCCCCCC
Q 004739 33 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~-~~--~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|+ |++|++++.+ +.|.+|++....+.. ..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~------~~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL------TF 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE------EE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCce------ee
Confidence 44455789999999985 34 333333 57778999999999 5888888876 999999997322211 12
Q ss_pred ceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceE
Q 004739 109 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 188 (732)
Q Consensus 109 ~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (732)
+..+..+. .+..++|+|++..+++++..++.|.+||+..+.. ...+... . ....+.
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~-----------~-~~~~~~ 132 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP-----------VGVVDVV-----------E-GLDGCH 132 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE-----------EEEEEEE-----------C-CCTTBC
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc-----------ccccccc-----------c-CCCCce
Confidence 33444333 7899999996633444455588999999952210 0001000 0 112477
Q ss_pred EEEecCCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004739 189 SCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 267 (732)
Q Consensus 189 ~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~ 267 (732)
+++|+|+ ++++++++ .++.|++||+.+...+..... ... ..+.+..+..++|+|+|++|++++
T Consensus 133 ~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~pdg~~l~~~~ 196 (343)
T 1ri6_A 133 SANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQDP--------AEV-------TTVEGAGPRHMVFHPNEQYAYCVN 196 (343)
T ss_dssp CCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEE--------EEE-------ECSTTCCEEEEEECTTSSEEEEEE
T ss_pred EEEECCC-CCEEEEecCCCCEEEEEEecCCCceeeecc--------ccc-------ccCCCCCcceEEECCCCCEEEEEe
Confidence 8899999 66777666 899999999986221111000 000 111122478899999999876665
Q ss_pred -cCCeEEEEECCC
Q 004739 268 -SGEHVYLMDVNH 279 (732)
Q Consensus 268 -~dg~v~iwd~~~ 279 (732)
.++.|.+|++..
T Consensus 197 ~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 197 ELNSSVDVWELKD 209 (343)
T ss_dssp TTTTEEEEEESSC
T ss_pred CCCCEEEEEEecC
Confidence 689999999965
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=2.6e-19 Score=184.08 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=132.8
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEEEEcCCCCCCCCC
Q 004739 25 ISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 25 l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~vwd~~~~~~~~~~ 102 (732)
..|.++++ .+++++.++.|++||+.+++.+..+ ..+...+ +++|+|+ |+++++++. ++.|.+||+.+...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~~~---- 74 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLEPP---- 74 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSSSC----
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCCce----
Confidence 34566555 4777888999999999999998887 4555566 9999999 476665555 89999999986421
Q ss_pred CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
....+..+..+..+++|+|++ ++++++..++ .|.+||+.+++.. ..+.
T Consensus 75 -----~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~--------------~~~~--------- 125 (331)
T 3u4y_A 75 -----KVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFI--------------STIP--------- 125 (331)
T ss_dssp -----EEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEE--------------EEEE---------
T ss_pred -----eEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeE--------------EEEE---------
Confidence 034455555555559999965 7676555443 8999999876521 0000
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCe-EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
......+++|+|++..++++...++. |.+|++.....+.... .... . . ...+..++|+|
T Consensus 126 ---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------------~~~~--~-~-~~~~~~~~~sp 185 (331)
T 3u4y_A 126 ---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------------QEFI--S-G-GTRPFNITFTP 185 (331)
T ss_dssp ---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------EEEE--C-S-SSSEEEEEECT
T ss_pred ---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------Cccc--c-C-CCCccceEECC
Confidence 11245899999994445666666688 9999998543221110 0000 0 1 11378999999
Q ss_pred CCCEEEEEe-cCCeEEEEECCCC
Q 004739 259 NGEEVLLSY-SGEHVYLMDVNHA 280 (732)
Q Consensus 259 ~g~~l~~~~-~dg~v~iwd~~~~ 280 (732)
+|++|++++ .++.|++||+.++
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSST
T ss_pred CCCEEEEEeCCCCeEEEEECCCC
Confidence 999776665 5899999998773
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=8.5e-20 Score=184.04 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=124.5
Q ss_pred EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC-CCCCCCCCCCCCCceeecc
Q 004739 36 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC 114 (732)
Q Consensus 36 sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~ 114 (732)
+++.|++|++||+.+++..... .|...|.+++|+|+ |++|++++ ++.|++||+.+ ... ......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~~~----------~~~~~~ 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDPSP----------EKVDTG 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCCSC----------EECCCT
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCCCc----------eEeccc
Confidence 3467899999999998876544 68899999999999 58888876 88999999986 432 233334
Q ss_pred c-cCceeEEEEecCCCcEEEEEe--CCCcEEEEEC--CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEE
Q 004739 115 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDF--RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 189 (732)
Q Consensus 115 h-~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (732)
+ ...+.+++|+|++ ++|++++ .++...+|.+ .++... .+. ....+..
T Consensus 82 ~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~-----------------------~~~----~~~~~~~ 133 (297)
T 2ojh_A 82 FATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPR-----------------------LMT----KNLPSYW 133 (297)
T ss_dssp TCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCE-----------------------ECC----SSSSEEE
T ss_pred cccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCceE-----------------------Eee----cCCCccc
Confidence 4 4678999999965 7888887 3345555554 333210 111 1114788
Q ss_pred EEecCCCCCEEE-EEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe
Q 004739 190 CDISSTRPHLLL-VGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY 267 (732)
Q Consensus 190 i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~ 267 (732)
++|+|+ ++.|+ ++..++.++||+++... ....+ ..+.. .+.+++|+|+|++|+.++
T Consensus 134 ~~~spd-g~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 134 HGWSPD-GKSFTYCGIRDQVFDIYSMDIDSGVETRL--------------------THGEG-RNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp EEECTT-SSEEEEEEEETTEEEEEEEETTTCCEEEC--------------------CCSSS-CEEEEEECTTSSEEEEEE
T ss_pred eEECCC-CCEEEEEECCCCceEEEEEECCCCcceEc--------------------ccCCC-ccccceECCCCCEEEEEe
Confidence 999999 56555 78889999999864321 11111 11222 589999999999888776
Q ss_pred c-CCeEEEEECCC
Q 004739 268 S-GEHVYLMDVNH 279 (732)
Q Consensus 268 ~-dg~v~iwd~~~ 279 (732)
. ++.++||++..
T Consensus 192 ~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 192 SRTGQMQIWRVRV 204 (297)
T ss_dssp CTTSSCEEEEEET
T ss_pred cCCCCccEEEECC
Confidence 4 88888887753
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=7.6e-19 Score=182.34 Aligned_cols=205 Identities=10% Similarity=0.078 Sum_probs=146.3
Q ss_pred cCCceeEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEE
Q 004739 18 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR 89 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~-------dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~ 89 (732)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+. ....+.+++|+|++ + ++++...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg--~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNTT--QTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETTT--TEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCCC--CEEEEEecCCCEEE
Confidence 4567889999999998888774 5689999999999888873 34457899999994 6 455556689999
Q ss_pred EEEcCCCCCCCCCCCCCCCceeeccccC---------ceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCC
Q 004739 90 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
+||+.+++. +..+..+.. .+.+++|+|++..++++. +.++.|.+||+.+++..
T Consensus 115 ~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~------- 177 (353)
T 3vgz_A 115 AIDAKTGEV----------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK------- 177 (353)
T ss_dssp EEETTTCCE----------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred EEeCCCCee----------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence 999986432 333333221 378899999764444444 35788999999876521
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
..+ ..+...+.+++|+|+ +++|++++.++.|.+||+.+++.+..+...
T Consensus 178 -------~~~-----------~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------- 225 (353)
T 3vgz_A 178 -------TAI-----------QNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKLL------------- 225 (353)
T ss_dssp -------EEE-----------CCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEECC-------------
T ss_pred -------EEe-----------cCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcC-------------
Confidence 110 111224567899999 778999999999999999987654333110
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
..++.. .+..++|+|+|++|++++. ++.|.+||+.+
T Consensus 226 ---~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 226 ---DDGKEH-FFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp ---CSSSCC-CEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred ---CCCCCc-ccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 011222 4788999999998877776 48999999877
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.1e-19 Score=187.24 Aligned_cols=72 Identities=7% Similarity=-0.105 Sum_probs=64.0
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCC
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 678 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~g 678 (732)
++|||++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+|+|++|++++.|+.|++||+.+++.+..+..
T Consensus 248 ~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 248 VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 59999999988 799999999999999888754 5678999999999988899999999999999988776543
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=1.1e-19 Score=207.61 Aligned_cols=201 Identities=12% Similarity=-0.012 Sum_probs=139.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC----
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR---- 95 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~---- 95 (732)
..|.+++|+|| ++++.+. ++.|++||+.+++..... .+...+.+++|+|+ |++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--DTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--CCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--CCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 6666554 599999999988766544 56777999999999 5888885 689999999986
Q ss_pred -CCCCCCCCCCCCCceeecccc--------------CceeEEEEecCCCcEEEEEe------------------------
Q 004739 96 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSAS------------------------ 136 (732)
Q Consensus 96 -~~~~~~~~~~~~~~~~~~~h~--------------~~v~~l~~~p~~~~~l~s~s------------------------ 136 (732)
+... .....+. ..+.++.|+|++ ++|++++
T Consensus 155 ~g~~~----------~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 155 MSRAI----------AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CCCCE----------ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred CCCcE----------EeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 4321 1112122 235899999965 7777776
Q ss_pred ---------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004739 137 ---------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 207 (732)
Q Consensus 137 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg 207 (732)
.+..|++||+.+++ ...+.....+...+.+++|+|+ +++|++++.++
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~ 279 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR 279 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence 23457777766543 2122222235557899999999 78888877765
Q ss_pred -----eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC--CCCEEEEEecCCeEEEEECC
Q 004739 208 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 208 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--~g~~l~~~~~dg~v~iwd~~ 278 (732)
.|++||+.+++....+.. ... ..... .+..++|+| +|++|+++..+|.++||.+.
T Consensus 280 ~~~~~~v~~~d~~~g~~~~~~~~-------------~~~--~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 280 AQNECKVNAYDAETGRFVRTLFV-------------ETD--KHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp TSCEEEEEEEETTTCCEEEEEEE-------------EEC--SSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CCCeeEEEEEECCCCceeeEEEE-------------ccC--CCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 899999988632221100 000 00000 245689999 99999999889999999876
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=4.3e-19 Score=197.60 Aligned_cols=197 Identities=9% Similarity=0.003 Sum_probs=137.3
Q ss_pred cCCceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEc
Q 004739 18 HQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNL 93 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~ 93 (732)
+..+|++++|+|||++||+++. ||+++||++.+++.. .+...+...+..+.|+|+ +++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC---eEEEEeccCCCCcceEEEEE
Confidence 3568999999999999999886 999999998766554 442333368999999997 67887775 556677766
Q ss_pred CC--CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 94 SR--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 94 ~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
.. ... ...+... ..+...+|+|++...+++.+.++.+.+||+.+++.. .+.
T Consensus 96 ~~~~~g~----------~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~l~---- 148 (582)
T 3o4h_A 96 NTSRPGE----------EQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------ELA---- 148 (582)
T ss_dssp ETTSTTC----------CEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------EEE----
T ss_pred eccCCCc----------cccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------Eee----
Confidence 53 211 1122211 223456888876555555555556669999776521 111
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCC----CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.. ...+++|+|+ |++|++++.+ +.|++||+.+++.. .+ .++.
T Consensus 149 -------~~-----~~~~~~~spD-G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l--------------------~~~~ 194 (582)
T 3o4h_A 149 -------RL-----PGFGFVSDIR-GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VF--------------------DSGE 194 (582)
T ss_dssp -------EE-----SSCEEEEEEE-TTEEEEEEEEETTEEEEEEEETTTCCCE-EE--------------------CCSS
T ss_pred -------cC-----CCceEEECCC-CCEEEEEEEcCCCCeEEEEEcCCCCCce-Ee--------------------ecCC
Confidence 00 1167899999 8899988777 78999999876532 11 2233
Q ss_pred cccEEEEEEcCCCCEEEEEecCC--eEEEEECCCC
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHA 280 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg--~v~iwd~~~~ 280 (732)
. .+..++|+|||++|+++..++ .|++||+.++
T Consensus 195 ~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 195 G-SFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp C-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred C-ccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 3 489999999999999888888 8999998874
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=6.4e-19 Score=177.60 Aligned_cols=237 Identities=12% Similarity=0.063 Sum_probs=166.2
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeeEEEEccCC-CcCeEEEEEecCCCCCEEEEEE--CCCc
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANVFCTKFVPETSDELVVSGA--GDAE 87 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~-~~~~~~~~~~h-~~~V~~~~~s~~~~g~~l~s~~--~dg~ 87 (732)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++..... ..+ ...|.+++|+|+ |++|++++ .++.
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDHGISPD--GALYAISDKVEFGK 109 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCCEECTT--SSEEEEEECTTTSS
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccceEECCC--CCEEEEEEeCCCCc
Confidence 445667999999999999999999987 78999999998 7776655 444 478899999999 58999988 4456
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
.+||.+....+. ...+..+ ..+..++|+|++..++++++.++.+++|++......
T Consensus 110 ~~l~~~~~~~~~---------~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~--------------- 164 (297)
T 2ojh_A 110 SAIYLLPSTGGT---------PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV--------------- 164 (297)
T ss_dssp CEEEEEETTCCC---------CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---------------
T ss_pred ceEEEEECCCCc---------eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc---------------
Confidence 667666432221 2333333 348899999976445558888999999996432210
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCC-CCCCcccccCCCCCCccccccccccccCC
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHG 245 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (732)
......+...+.++.|+|+ ++.|+.++ .++.+++|++.. ...+..+ ..
T Consensus 165 ---------~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~~~~--------------------~~ 214 (297)
T 2ojh_A 165 ---------ETRLTHGEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSVERI--------------------TD 214 (297)
T ss_dssp ---------EEECCCSSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCEEEC--------------------CC
T ss_pred ---------ceEcccCCCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCcEEE--------------------ec
Confidence 0111223447899999999 66666655 589999998862 2222211 12
Q ss_pred CccccEEEEEEcCCCCEEEEEecC-----------CeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCcc
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDF 314 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (732)
+.. .+..++|+|+|++|++++.+ +.|++||+.+++...... ..++...+..+.|
T Consensus 215 ~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--------------~~~~~~~~~~~~~ 279 (297)
T 2ojh_A 215 SAY-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD--------------LFGGQGTMNSPNW 279 (297)
T ss_dssp CSE-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE--------------EEESTTTSCSCCB
T ss_pred CCc-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec--------------cCCCCcccccceE
Confidence 222 58899999999999988876 569999998854322211 1233456778899
Q ss_pred CCCccccc
Q 004739 315 LQTNIRVR 322 (732)
Q Consensus 315 ~~~g~~~~ 322 (732)
+|+|+.++
T Consensus 280 spdg~~l~ 287 (297)
T 2ojh_A 280 SPDGDEFA 287 (297)
T ss_dssp CTTSSEEE
T ss_pred CCCCCEEE
Confidence 99999887
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=3.1e-19 Score=205.07 Aligned_cols=126 Identities=8% Similarity=-0.014 Sum_probs=88.6
Q ss_pred CCCCccccccCCCCCCCCCCCC---CCC--CCccccccccccceeEeeeccc-cceeeecccccCCCCEEEEecCCCcEE
Q 004739 548 RGDSARETVDANGSSGSPSSSS---QND--RIPYQPETVIDMKQRYVGHCNV-GTDIKQASFLGQRGDYIASGSDDGRWF 621 (732)
Q Consensus 548 ~~~~v~~~~~s~d~~~l~~~~~---~~~--~~~~~~~~~~~~~~~~~gh~~~-~~~i~~~~f~s~dg~~lasgs~Dg~i~ 621 (732)
+...+..++| |||++|+++.. ..+ ..+|+..+ .+....+.+|... +..+..+. |||||+++++++.||.++
T Consensus 285 ~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~~~~~~g~~~ 361 (741)
T 2ecf_A 285 QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLHNSLR-FLDDGSILWSSERTGFQH 361 (741)
T ss_dssp SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECSSCCCCCSCCE-ECTTSCEEEEECTTSSCE
T ss_pred cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCCCcCCcCCceE-ECCCCeEEEEecCCCccE
Confidence 4556778999 99999886542 122 33366665 5566666666532 11122344 599999999999999989
Q ss_pred EEEcC-cccEEEEEecCcccEEEE-eecCCCCeE-EEecCCC--cEEEEcCCC-CCCccccC
Q 004739 622 IWEKQ-TGRLIKMLLGDEAVVNCV-QCHPFDCVV-ATSGIDN--TIKIWTPSA-SVPSIVSG 677 (732)
Q Consensus 622 iWd~~-tg~~~~~l~gH~~~V~~v-~fsp~~~~l-~S~s~D~--~i~vW~~~~-~~~~~~~~ 677 (732)
||.+. +++ ...|.+|...|..+ +|+|+++.| ++++.|+ +++||++.. +.....+.
T Consensus 362 l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 362 LYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 98876 566 88999999999988 599999865 5666666 899999864 44344433
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=5.6e-18 Score=175.43 Aligned_cols=197 Identities=12% Similarity=0.148 Sum_probs=121.9
Q ss_pred CCcEEEEeC--CCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEEcCCCCCCCCCCCCCCCceeecc
Q 004739 40 DTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC 114 (732)
Q Consensus 40 dg~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 114 (732)
++.|.+|++ .+++........+...+..++|+|+ |+ |++++. ++.|.+|++..+.. ..+..+..
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spd--g~-l~~~~~~~~~~~v~~~~~~~g~~--------~~~~~~~~ 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAK--DC-LYSVDKEDDEGGIAAWQIDGQTA--------HKLNTVVA 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTT--CE-EEEEEEETTEEEEEEEEEETTEE--------EEEEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccC--Ce-EEEEEecCCCceEEEEEecCCcE--------EEeeeeec
Confidence 456777765 4565543221345677889999999 46 555544 68999999965332 12444455
Q ss_pred ccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004739 115 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 193 (732)
Q Consensus 115 h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 193 (732)
+...+..++|+|++ ++|++++ .++.|.+|++...... ..+........... .......+.+++|+
T Consensus 84 ~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~-----------~~~~~~~~~~~~p~--~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 84 PGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGAL-----------TLTDTVQHSGHGPR--PEQDGSHIHYTDLT 149 (347)
T ss_dssp ESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCE-----------EEEEEEECCCCCSS--TTCSSCCEEEEEEC
T ss_pred CCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCe-----------eecceeecCCCCCC--ccccCCCceEEEEC
Confidence 77889999999966 6666666 7899999999642211 11111100000000 11123358899999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE-ecCCeE
Q 004739 194 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHV 272 (732)
Q Consensus 194 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~-~~dg~v 272 (732)
|+ ++++++...++.|++||+.....+... ..+ ....+..+..++|+|+|++|+++ ..++.|
T Consensus 150 pd-g~l~v~~~~~~~v~~~~~~~~g~~~~~----------~~~-------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 150 PD-NRLAVIDLGSDKVYVYNVSDAGQLSEQ----------SVL-------TMEAGFGPRHLVFSPDGQYAFLAGELSSQI 211 (347)
T ss_dssp TT-SCEEEEETTTTEEEEEEECTTSCEEEE----------EEE-------ECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CC-CcEEEEeCCCCEEEEEEECCCCcEEEe----------eeE-------EcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence 99 567777777899999999832211110 000 00111137789999999977765 458899
Q ss_pred EEEECCC
Q 004739 273 YLMDVNH 279 (732)
Q Consensus 273 ~iwd~~~ 279 (732)
.+|++..
T Consensus 212 ~v~~~~~ 218 (347)
T 3hfq_A 212 ASLKYDT 218 (347)
T ss_dssp EEEEEET
T ss_pred EEEEecC
Confidence 9999875
No 146
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=204.50 Aligned_cols=215 Identities=10% Similarity=0.064 Sum_probs=133.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCc---CeEEEEEecCCCCCEEEEEEC---------CCcEEEE
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF 91 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~---~V~~~~~s~~~~g~~l~s~~~---------dg~i~vw 91 (732)
.++|+|||+++++ +.|++|++||+.+++....+ .+|.. .|.+++|||+ |++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence 7899999965555 46999999999999887666 44543 4899999999 589988876 7899999
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
|+.++.... ...+ ...+..++|+|++ +.|+.+. ++.|++||+.+++.......++.. .++.
T Consensus 96 d~~~g~~~~--------~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~---~v~~--- 156 (719)
T 1z68_A 96 DLSNGEFVR--------GNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGREN---KIFN--- 156 (719)
T ss_dssp ETTTTEECC--------SSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTT---TEEE---
T ss_pred ECCCCcccc--------ceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC---CeEc---
Confidence 998643200 0111 2458889999966 6777765 689999999887632111111000 0000
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCC----------------------------------eEEEEECCCC
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDRRML 217 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg----------------------------------~v~iwd~~~~ 217 (732)
+....+... .......+++|+|| |++|++++.|. .|++||+.++
T Consensus 157 g~~~~v~~e-e~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~ 234 (719)
T 1z68_A 157 GIPDWVYEE-EMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP 234 (719)
T ss_dssp SSCCHHHHH-HTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred ccccceeee-ecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence 000000000 00012257999999 78898887652 7889998875
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC----CeEEEEE
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD 276 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d----g~v~iwd 276 (732)
+....+. ...+..+ .++.. .+..++|+||++++++.... ..|++||
T Consensus 235 ~~~~~~~----------~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 235 AYVGPQE----------VPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp HHHCCEE----------CCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CccceeE----------ccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 4210000 0000000 12333 58999999998877765433 2477888
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=3e-19 Score=204.63 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=111.5
Q ss_pred cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeCC-
Q 004739 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASED- 138 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~d- 138 (732)
..+.+++|+|+ |+++++ +.||+|++||+.++.. ...+..|.. .|.+++|+|++ ++|++++.+
T Consensus 17 ~~~~~~~~spd--g~~~~~-~~dg~i~~~d~~~g~~----------~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~ 82 (723)
T 1xfd_A 17 IHDPEAKWISD--TEFIYR-EQKGTVRLWNVETNTS----------TVLIEGKKIESLRAIRYEISPDR-EYALFSYNVE 82 (723)
T ss_dssp CCCCCCCBSSS--SCBCCC-CSSSCEEEBCGGGCCC----------EEEECTTTTTTTTCSEEEECTTS-SEEEEEESCC
T ss_pred ccccccEEcCC--CcEEEE-eCCCCEEEEECCCCcE----------EEEeccccccccccceEEECCCC-CEEEEEecCc
Confidence 34678999999 477766 7899999999987532 344555554 49999999965 888888764
Q ss_pred --------CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEE
Q 004739 139 --------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR 210 (732)
Q Consensus 139 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~ 210 (732)
+.|.+||+.+++.. .+.....+...+..++|+|+ |+.|+.++. +.|+
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~~~~~~~~~~~~~~SPd-G~~la~~~~-~~i~ 137 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDPQ-----------------------SLDPPEVSNAKLQYAGWGPK-GQQLIFIFE-NNIY 137 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCCE-----------------------ECCCTTCCSCCCSBCCBCSS-TTCEEEEET-TEEE
T ss_pred cceeecceeeEEEEECCCCceE-----------------------eccCCccccccccccEECCC-CCEEEEEEC-CeEE
Confidence 67889999887621 11222233345778899999 788888875 7999
Q ss_pred EEECCCCCCCcccccCCCCCCccccccccccccCCCc--------cccEEEEEEcCCCCEEEEEecC-CeEEEEECCC
Q 004739 211 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS--------SLHLTHVTFSPNGEEVLLSYSG-EHVYLMDVNH 279 (732)
Q Consensus 211 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~l~~sp~g~~l~~~~~d-g~v~iwd~~~ 279 (732)
+||+.+++.......... . + .+ .|+. ...+.+++|+|||++|+.++.+ +.+.+|++..
T Consensus 138 ~~~~~~g~~~~~~~~~~~-~--~-~~-------~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~ 204 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKE-G--V-IY-------NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT 204 (723)
T ss_dssp EESSSSSCCEEEECCCBT-T--T-EE-------EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred EEECCCCceEEEecCCCC-C--c-eE-------CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeec
Confidence 999988654322110000 0 0 00 0000 0024789999999999988764 5677787654
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=1.1e-18 Score=185.41 Aligned_cols=219 Identities=11% Similarity=0.083 Sum_probs=153.2
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------eeEEEE----ccCCCcCeEEEEEecCCCCCEEE---
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHSI----ETGHSANVFCTKFVPETSDELVV--- 80 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~----------~~~~~~----~~~h~~~V~~~~~s~~~~g~~l~--- 80 (732)
+...++.+++++++.+|++++.|+ ++||+.... ..+... ...+...|.+++|+|+ |++|+
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~ 111 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM 111 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence 445689999999999999999887 999874311 011111 0246678999999999 58888
Q ss_pred -EEECCCcEEEEEcCCCCCCCCC-CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004739 81 -SGAGDAEVRLFNLSRFSGRGLD-DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 158 (732)
Q Consensus 81 -s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 158 (732)
+|+.|+.|+|||+.+....... ......+..+.+|...|.+++|+|+++++|++++.||+|++||++++...
T Consensus 112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------ 185 (434)
T 2oit_A 112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------ 185 (434)
T ss_dssp EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence 7888999999998753100000 00011245667899999999999976799999999999999999876310
Q ss_pred CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccc
Q 004739 159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP 238 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (732)
.....|...|.+++|+|+ +++|++|+.||.|++||++ ++....+...
T Consensus 186 -------------------~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~------------ 232 (434)
T 2oit_A 186 -------------------CATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCP------------ 232 (434)
T ss_dssp -------------------EEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCC------------
T ss_pred -------------------eeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCC------------
Confidence 011135568999999999 8899999999999999998 3322222100
Q ss_pred cccccCCCccccEEEEEEcCCCCEEEEEe-cCC------eEEEEECCCC
Q 004739 239 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA 280 (732)
Q Consensus 239 ~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg------~v~iwd~~~~ 280 (732)
... ...|. ..|.+++|++++.++++.+ .+| .+++|++...
T Consensus 233 ~~~-~~~~~-~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 PFY-ESDHP-VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTC-CTTSC-EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccc-CCCCc-eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 000 01122 2599999999988775544 343 3899999874
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=7.8e-18 Score=174.31 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=109.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE-EEEECCCcEEEEEcCCCCCCCCC
Q 004739 24 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l-~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
.++++++++++++++.+++|++||+.+++.+..+..+....+..++|+|++ +++ +++..++.|.+||+.++..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~~~v~~~~~~~i~~~d~~t~~~---- 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKN---- 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEE----
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC--CEEEEEeCCCCcEEEEeCCCCcE----
Confidence 456788899999999999999999999998888733332357899999994 654 5556789999999986421
Q ss_pred CCCCCCceeecc-c-----cCceeEEEEecCCCcEEEEEeCC------------CcEEEEECCCCCCCCCCCCCCcccce
Q 004739 103 DNAITPSALYQC-H-----TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 103 ~~~~~~~~~~~~-h-----~~~v~~l~~~p~~~~~l~s~s~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
+..+.. + ...+..++|+|++ +++++++.+ +.|.+||+.+++.....
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------- 141 (349)
T 1jmx_B 78 ------TFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------- 141 (349)
T ss_dssp ------EEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS---------
T ss_pred ------EEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccccee---------
Confidence 233321 1 2337889999965 777777754 89999999875421000
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCc
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT 221 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~ 221 (732)
. .. .+...+.+++|+|+ ++ +++++. .|++||+.+++.+.
T Consensus 142 ~----------~~----~~~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 142 R----------TF----PMPRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTV 180 (349)
T ss_dssp E----------EE----ECCSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEE
T ss_pred e----------ec----cCCCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceec
Confidence 0 00 01125778899999 66 555543 49999998876443
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=1.6e-17 Score=174.83 Aligned_cols=213 Identities=14% Similarity=0.122 Sum_probs=142.4
Q ss_pred hhccccEeeeccCCceeE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCE
Q 004739 7 RRLSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL 78 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~-----l~~s~dg~~lasg~~-dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~ 78 (732)
.+...++.|..|...... .+|+|||++|+.++. ++ .|.+||+.+++..... .++...+..+.|+|+ |+.
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~ 94 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDA 94 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCE
Confidence 345667778888766666 889999999998887 66 3888899988877655 567666667889999 589
Q ss_pred EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEE--EecCCCcEEEEE---------------------
Q 004739 79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA--VEVGNPHVVWSA--------------------- 135 (732)
Q Consensus 79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~p~~~~~l~s~--------------------- 135 (732)
|+.++.++.|++||+.++.. ......+...+.... ++|++ .+++..
T Consensus 95 l~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEE----------NVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp EEEEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred EEEEeCCCeEEEEECCCCcc----------eeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhc
Confidence 99999999999999987432 223333444443333 47754 666532
Q ss_pred -eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC-CCCCEEEEEeCC------C
Q 004739 136 -SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------A 207 (732)
Q Consensus 136 -s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~tg~~d------g 207 (732)
..+..|.+||+.+++.. .+. .+...+..+.|+| + ++.|+....+ .
T Consensus 164 ~~~~~~l~~~d~~~g~~~-----------------------~l~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~ 216 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGEST-----------------------VIL---QENQWLGHPIYRPYD-DSTVAFCHEGPHDLVDA 216 (388)
T ss_dssp GCCCEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTE-EEEEEEEECSCTTTSSC
T ss_pred cCCcceEEEEECCCCceE-----------------------Eee---cCCccccccEECCCC-CCEEEEEEecCCCCCcc
Confidence 23456888888776511 111 1223578899999 8 6777776653 3
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC----eEEEEECCCC
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHA 280 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg----~v~iwd~~~~ 280 (732)
.|.++|+...... .+. .......+..++|+|+|+.|+..+. ++ .|++||+.++
T Consensus 217 ~l~~~d~~~~~~~-~l~-------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 217 RMWLINEDGTNMR-KVK-------------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp SEEEEETTSCCCE-ESC-------------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred eEEEEeCCCCceE-Eee-------------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 7888887654321 110 1111124778999999997765544 22 3899988874
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=5.8e-17 Score=167.17 Aligned_cols=216 Identities=7% Similarity=0.091 Sum_probs=140.4
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCe--eEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcEEE
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRL 90 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~d-g~i~vWd~~--~~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i~v 90 (732)
.|...+.+++|+|+|++|++++.+ +.|++|++. +++ .+..+ ..+. .+.+++|+|+ |++|++++. ++.|.+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~s~d--g~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALPG-SLTHISTDHQ--GQFVFVGSYNAGNVSV 110 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECSS-CCSEEEECTT--SSEEEEEETTTTEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccCC-CCcEEEEcCC--CCEEEEEecCCCeEEE
Confidence 477889999999999999988876 999999987 554 34444 2333 7899999999 477766654 889999
Q ss_pred EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCC-CCCCCCCCCCCcccceEEee
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 168 (732)
||+..+.. ...+..+.. ...+.+++|+|++ +++++++ .++.|.+||+.+ ++.. .+..
T Consensus 111 ~d~~~~~~-------~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~------------~~~~ 169 (343)
T 1ri6_A 111 TRLEDGLP-------VGVVDVVEG-LDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLV------------AQDP 169 (343)
T ss_dssp EEEETTEE-------EEEEEEECC-CTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEE------------EEEE
T ss_pred EECCCCcc-------ccccccccC-CCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCcee------------eecc
Confidence 99952110 012333333 3458899999966 5555555 889999999976 3310 0000
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECCCCC-CCcccccCCCCCCccccccccccccCCC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
..... .....+..++|+|+ +++++ ++..++.|++||+.... .+... ..... . ..++
T Consensus 170 ------~~~~~--~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~~~----------~~~~~--~-~~~~ 227 (343)
T 1ri6_A 170 ------AEVTT--VEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIECV----------QTLDM--M-PENF 227 (343)
T ss_dssp ------EEEEC--STTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCEEE----------EEEEC--S-CTTC
T ss_pred ------ccccc--CCCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEE----------eeccc--c-Cccc
Confidence 00000 11225778999999 66554 55588999999996421 11000 00000 0 0111
Q ss_pred -ccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004739 247 -SSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 279 (732)
Q Consensus 247 -~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~ 279 (732)
....+..++|+|+|++|+++. .++.|++|++..
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 012477899999999888655 689999999874
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=2.2e-16 Score=164.36 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=127.1
Q ss_pred CCCEEEEEe----CCCcEEEEeC--CCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC----CcEEEEEcCCCCCC
Q 004739 30 KGSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGR 99 (732)
Q Consensus 30 dg~~lasg~----~dg~i~vWd~--~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d----g~i~vwd~~~~~~~ 99 (732)
...+++.|+ .++.|.+|++ .+++....... +...+..++|+|+ |++|++++.+ +.|.+|++....+.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 344566664 3568999966 45654443322 6777889999999 5889888875 79999998753222
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. ..+.....+......+++ ++..++++...++.|.+|++.....+.... .......... ..
T Consensus 89 ~------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~--------~~~~~~g~~~---~~ 149 (361)
T 3scy_A 89 L------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS--------DVIEFKGSGP---DK 149 (361)
T ss_dssp E------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS--------EEEECCCCCS---CT
T ss_pred E------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc--------eeEEccCCCC---Cc
Confidence 1 123334445556777877 453344444468899999997644221110 0000000000 00
Q ss_pred CCCCccceEEEEecCCCCCEEEEE-eCCCeEEEEECCCCCC------CcccccCCCCCCccccccccccccCCCccccEE
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg-~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
...+...+.+++|+|+ +++|+++ ..++.|++|++..... +.... ..... . . .....+.
T Consensus 150 ~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-------~~~~~---~---~-~~~~~~~ 214 (361)
T 3scy_A 150 ERQTMPHLHCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-------TPEAF---K---V-APGSGPR 214 (361)
T ss_dssp TTCSSCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-------EEEEE---E---C-CTTCCEE
T ss_pred cccCCCcceEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-------cccce---e---c-CCCCCCe
Confidence 0112235688999999 6655544 4588999999875431 10000 00000 0 0 1112378
Q ss_pred EEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004739 253 HVTFSPNGEEVLLSY-SGEHVYLMDVNH 279 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~-~dg~v~iwd~~~ 279 (732)
.++|+|+|++|++++ .++.|.+|++.+
T Consensus 215 ~~~~spdg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 215 HLIFNSDGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp EEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred EEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence 899999999888887 589999999875
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.76 E-value=4.5e-17 Score=167.27 Aligned_cols=267 Identities=8% Similarity=0.043 Sum_probs=176.5
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
+.+.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+ |++|+++..+
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~d--g~~l~~~~~~ 104 (331)
T 3u4y_A 29 TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPD--DQFAVTVTGL 104 (331)
T ss_dssp TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTT--SSEEEECCCS
T ss_pred ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCC--CCEEEEecCC
Confidence 456666677677777 9999999997766655 89999999999987 6666 556666666999999 5888855544
Q ss_pred C---cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCCCCCCCCCCcc
Q 004739 86 A---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 86 g---~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~ 161 (732)
+ .|.+||+.+.. .+..+. +.....+++|+|++..++++...++. |.+|++......
T Consensus 105 ~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~--------- 164 (331)
T 3u4y_A 105 NHPFNMQSYSFLKNK----------FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL--------- 164 (331)
T ss_dssp SSSCEEEEEETTTTE----------EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE---------
T ss_pred CCcccEEEEECCCCC----------eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE---------
Confidence 3 89999998642 134444 34456899999977556767777788 999999754311
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCE-EEEEeCCCeEEEEECCCCCC---CcccccCCCCCCcccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRRMLPP---LTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~tg~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~ 237 (732)
.+.. . ..+ ........++|+|+ +++ ++++..++.|++||+.+++. +..+
T Consensus 165 -----~~~~-~--~~~----~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-------------- 217 (331)
T 3u4y_A 165 -----FDTG-Q--EFI----SGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLNAV-------------- 217 (331)
T ss_dssp -----EEEE-E--EEE----CSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEEEE--------------
T ss_pred -----eecC-C--ccc----cCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceeeec--------------
Confidence 1110 0 000 11224689999999 664 45555789999999988765 3222
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCC
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ 316 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (732)
... ..+..++|+|+|++|++++. ++.|.+||+.+++.......... +...+ ........++|+|
T Consensus 218 ------~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~sp 282 (331)
T 3u4y_A 218 ------GTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG----LLIDP---RPLFGANQMALNK 282 (331)
T ss_dssp ------ECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC----CCCCC---GGGTTCCCEEECT
T ss_pred ------cCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc----cccCC---CCcccccceEECC
Confidence 111 13678999999998877764 78999999988543221111100 00001 1111225579999
Q ss_pred CccccccccccCcchhhHHHHHHHhhhhcCC
Q 004739 317 TNIRVRGEVATGLGKCRMLVEIARNSLEEGK 347 (732)
Q Consensus 317 ~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~ 347 (732)
||+.+. ++...++.+.+ |++....
T Consensus 283 dg~~l~--v~~~~~~~v~v-----~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLF--ISANISRELKV-----FTISGKV 306 (331)
T ss_dssp TSSEEE--EEETTTTEEEE-----EETTSCE
T ss_pred CCCEEE--EecCCCCcEEE-----EEecCCc
Confidence 999875 14555668888 8876443
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=7.6e-17 Score=171.32 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=146.9
Q ss_pred ccCCceeEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------ee---EEEEccCCCcCeEEEEEecCCCCCEEEE
Q 004739 17 GHQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~la----sg~~dg~i~vWd~~~~--------~~---~~~~~~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
.|...|++++|+|+|++|| +|+.|++|+|||+.++ +. +..+ .+|...|.+++|+|+. +.+|++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las 167 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAV 167 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEE
Confidence 3567899999999999999 7889999999998754 21 2333 6799999999999984 489999
Q ss_pred EECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcc
Q 004739 82 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 82 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
++.||+|++||+++.. .+....+|...|++++|+|+ +++|++|+.||.|++||++ ++..
T Consensus 168 ~s~Dg~v~iwD~~~~~----------~~~~~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~--------- 226 (434)
T 2oit_A 168 CLADGSIAVLQVTETV----------KVCATLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEK--------- 226 (434)
T ss_dssp EETTSCEEEEEESSSE----------EEEEEECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEE---------
T ss_pred EECCCeEEEEEcCCCc----------ceeeccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Cccc---------
Confidence 9999999999998642 13455678899999999996 5899999999999999987 3210
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCC------eEEEEECCCCCCCcccccCCCCCCccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA------FARLYDRRMLPPLTSCQKRMSPPPCVN 234 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~ 234 (732)
..+.. .......|...|.++.|+++ +.++++ +..+| .+++||++..+...... ..
T Consensus 227 ---~~~~~------~~~~~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~--------~~ 288 (434)
T 2oit_A 227 ---KVIPC------PPFYESDHPVRVLDVLWIGT-YVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEI--------FV 288 (434)
T ss_dssp ---EEECC------CTTCCTTSCEEEEEEEEEET-TEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCE--------EE
T ss_pred ---ccccC------CcccCCCCceeEEEEEEecC-ceEEEEEccCCCccCCCCceEEEEeccCCCCCCcc--------eE
Confidence 00000 00011234558999999997 555543 33443 38999998653211110 00
Q ss_pred cccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 235 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
.+........+... +-..+.+-++.+++++++. .+.|.|.....
T Consensus 289 ~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 289 NFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp ECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred ecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 01000000011122 1223445577777766665 66788776443
No 155
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.73 E-value=3.8e-16 Score=161.83 Aligned_cols=169 Identities=8% Similarity=0.096 Sum_probs=114.5
Q ss_pred CCcCeEEEEEecCCCCCEEEEEEC-------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEE
Q 004739 61 HSANVFCTKFVPETSDELVVSGAG-------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 133 (732)
Q Consensus 61 h~~~V~~~~~s~~~~g~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 133 (732)
....+..++|+|+ |+++++++. ++.|.+||+.+.. .+..+. ....+..++|+|++..+++
T Consensus 39 ~~~~~~~~~~s~d--g~~l~~~~~~~~~~~~~~~v~~~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ--ENALWLATSQSRKLDKGGVVYRLDPVTLE----------VTQAIH-NDLKPFGATINNTTQTLWF 105 (353)
T ss_dssp EESSEEEEEEETT--TTEEEEEECCCTTTEESEEEEEECTTTCC----------EEEEEE-ESSCCCSEEEETTTTEEEE
T ss_pred hccCccceEECCC--CCEEEEEcCCCcCCCCCccEEEEcCCCCe----------EEEEEe-cCCCcceEEECCCCCEEEE
Confidence 4456889999999 477777763 5689999998642 133443 2445788999997755667
Q ss_pred EEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEE
Q 004739 134 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARL 211 (732)
Q Consensus 134 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~i 211 (732)
+...++.|.+||+.+++.. ..+....+.. ........+.++.|+|+ ++++++++ .++.|.+
T Consensus 106 ~~~~~~~v~~~d~~~~~~~------------~~~~~~~~~~----~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVK------------GRLVLDDRKR----TEEVRPLQPRELVADDA-TNTVYISGIGKESVIWV 168 (353)
T ss_dssp EETTTTEEEEEETTTCCEE------------EEEESCCCCC----CSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEE
T ss_pred EecCCCEEEEEeCCCCeeE------------EEEecCCCcc----ccccCCCCCceEEECCC-CCEEEEEecCCCceEEE
Confidence 7777899999999887621 1111110000 00011123688999999 56666554 4789999
Q ss_pred EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
||+.+.+.+..+. .+ ...+..++|+|+|++|++++.++.|.+||+.++
T Consensus 169 ~d~~~~~~~~~~~--------------------~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 169 VDGGNIKLKTAIQ--------------------NT-GKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp EETTTTEEEEEEC--------------------CC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred EcCCCCceEEEec--------------------CC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9998875443321 01 113667899999999999999999999998873
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.73 E-value=4.8e-15 Score=154.20 Aligned_cols=224 Identities=6% Similarity=0.019 Sum_probs=136.4
Q ss_pred cCCceeEEEEcCCCCEEEEEeCC----CcEEEEeCCC--Ce--eEEEEccCCCcCeEEEEEecCCCCCEEEEEE-CCCcE
Q 004739 18 HQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEV 88 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~d----g~i~vWd~~~--~~--~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~-~dg~i 88 (732)
|...+..++|+|||++|++++.+ +.|.+|++.. ++ .+... ..+......+++ + +++|++++ .++.|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--d--g~~l~~~~~~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--N--GKNIVTANYSGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--C--SSEEEEEETTTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--C--CCEEEEEECCCCEE
Confidence 67788889999999999999875 7999998765 43 33333 335566777887 4 46666666 58899
Q ss_pred EEEEcCCCCCCCCCCCCCCCcee--------eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCc
Q 004739 89 RLFNLSRFSGRGLDDNAITPSAL--------YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 160 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~--------~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 160 (732)
.+|++........ ...... ...+...+.+++|+|++..++++...++.|.+|++..............
T Consensus 123 ~~~~~~~~g~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 123 TVFPIGQDGALLP----ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp EEEEBCTTSCBCS----CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred EEEEeCCCCcCcc----cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceee
Confidence 9999975321100 000000 1112334688999997644555555688999999876431000000000
Q ss_pred ccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 161 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
........ . ........++|+|+ ++++++++ .++.|++||+.+++.. .+ ...
T Consensus 199 ~~~~~~~~----------~--~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~~~g~~~-~~----------~~~--- 251 (361)
T 3scy_A 199 KGTPEAFK----------V--APGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRYADGMLD-EI----------QTV--- 251 (361)
T ss_dssp EEEEEEEE----------C--CTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEEETTEEE-EE----------EEE---
T ss_pred ccccccee----------c--CCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEecCCceE-Ee----------EEE---
Confidence 00000000 0 11224678999999 67776666 6899999999854311 00 000
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEecC--CeEEEEECCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVNH 279 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--g~v~iwd~~~ 279 (732)
... ..+.. ....++|+|+|++|+++..+ +.|.+|++..
T Consensus 252 ~~~-~~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 252 AAD-TVNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp ESC-SSCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred ecC-CCCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 000 11112 36899999999999777664 8999999863
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=6.3e-17 Score=180.13 Aligned_cols=67 Identities=7% Similarity=-0.012 Sum_probs=61.4
Q ss_pred ccCCCCEEEEecCCC--cEEEEEcCcccEEEEEecCcccEEEEe--------ecCCCCeEEEecCCCcEEEEcCCCCCCc
Q 004739 604 LGQRGDYIASGSDDG--RWFIWEKQTGRLIKMLLGDEAVVNCVQ--------CHPFDCVVATSGIDNTIKIWTPSASVPS 673 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg--~i~iWd~~tg~~~~~l~gH~~~V~~v~--------fsp~~~~l~S~s~D~~i~vW~~~~~~~~ 673 (732)
|||||++||+++.|+ +|++||+.++++. .+.+|...|.+++ |+|||.++++++.|++++||++ ++..
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 699999999988999 9999999999988 8899998898888 9999999999999999999999 5444
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=1e-15 Score=175.16 Aligned_cols=114 Identities=9% Similarity=0.043 Sum_probs=89.5
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcC-----eEEEEEecCCCCCEEEEEECC---------
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD--------- 85 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~-----V~~~~~s~~~~g~~l~s~~~d--------- 85 (732)
.....++|+|||++|+++ |++|++||+.++++...+ .+|... ...++|||+ |++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccc
Confidence 346689999999999986 899999999999987766 566533 244789999 5899888876
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCC
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS 151 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~ 151 (732)
+.+.+||+.++. ...+..|...+...+|+|++ +.||.+. ++.|++||+.+++.
T Consensus 92 ~~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 92 ASYDIYDLNKRQ-----------LITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEEEETTTTE-----------ECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEEEEECCCCc-----------EEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCce
Confidence 566799999743 23455677889999999966 6676664 68999999988763
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=5.7e-16 Score=159.28 Aligned_cols=235 Identities=11% Similarity=0.127 Sum_probs=158.6
Q ss_pred hccccEeeeccC-C-ceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCC----CcCeEEEEEecCCCCCEEE
Q 004739 8 RLSQERELEGHQ-G-CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGH----SANVFCTKFVPETSDELVV 80 (732)
Q Consensus 8 ~~~~~~~l~~h~-~-~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h----~~~V~~~~~s~~~~g~~l~ 80 (732)
+.+.++.+.... . .+..++|+|+|++++ +++.++.|.+||+.+++.+..+..++ ...+.+++|+|+ |++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~ 97 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPD--GKTLA 97 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTT--SSEEE
T ss_pred CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCC--CCEEE
Confidence 345555555322 2 588999999998664 55667899999999999887773333 236789999999 57888
Q ss_pred EEE------------CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 81 SGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 81 s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
+++ .++.|.+||+.+.. .+..+.. ...+.+++|+|++ ++|+++ ++.|.+||+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~ 163 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEA 163 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTT
T ss_pred EEecccccccccccccCceEEEEECCCCc----------EEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCC
Confidence 876 57999999998632 1333332 4567889999966 555555 68899999987
Q ss_pred CCCCCCCCCC--------Cccc----------------------------------ceEEeeccCCccccccCCCCCccc
Q 004739 149 GSSCPPAGSS--------HQEC----------------------------------RNILLDLRCGAKRSLADPPKQTLS 186 (732)
Q Consensus 149 ~~~~~~~~~~--------~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 186 (732)
++........ .... ...++++.++... ......+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~ 242 (337)
T 1pby_B 164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVF 242 (337)
T ss_dssp TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSC
T ss_pred CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCc
Confidence 6542110000 0000 1134444444332 1111223345
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004739 187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 266 (732)
Q Consensus 187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~ 266 (732)
+.+++|+|+ +++++++ ++.|++||+.+++.+..+. .. ..+.+++|+|+|++|+++
T Consensus 243 ~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~--------------------~~--~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 243 YFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP--------------------LP--HSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE--------------------CS--SCCCEEEECTTSCEEEEE
T ss_pred eeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceec--------------------CC--CceeeEEECCCCCEEEEE
Confidence 678999999 7788877 7899999998765443321 01 136789999999999999
Q ss_pred ecCCeEEEEECCCCCCcc
Q 004739 267 YSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 267 ~~dg~v~iwd~~~~~~~~ 284 (732)
+.++.|++||+.+++...
T Consensus 298 ~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 298 GALGDLAAYDAETLEKKG 315 (337)
T ss_dssp SBSSEEEEEETTTCCEEE
T ss_pred cCCCcEEEEECcCCcEEE
Confidence 999999999999865443
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=181.25 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=103.2
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC---ceeEEEEecCCCcEEEEEeC-----
Q 004739 66 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASE----- 137 (732)
Q Consensus 66 ~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~p~~~~~l~s~s~----- 137 (732)
.+++|+|+ |.+++ .+.|+.|++||+.++.. ...+..|.. .+.+++|+|++ ++|++++.
T Consensus 19 ~~~~~s~d--g~~~~-~~~d~~i~~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~ 84 (719)
T 1z68_A 19 FFPNWISG--QEYLH-QSADNNIVLYNIETGQS----------YTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLW 84 (719)
T ss_dssp CCCEESSS--SEEEE-ECTTSCEEEEESSSCCE----------EEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECS
T ss_pred CccEECCC--CeEEE-EcCCCCEEEEEcCCCcE----------EEEEccccccccceeeEEECCCC-CeEEEEecCceeE
Confidence 37899999 45544 45799999999987432 333444433 38999999965 77877765
Q ss_pred ----CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 004739 138 ----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD 213 (732)
Q Consensus 138 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd 213 (732)
++.|++||+.+++.... ..+ ...+..++|+|+ |+.|+.+. ++.|++||
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~--------------------~~l------~~~~~~~~~SPD-G~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRG--------------------NEL------PRPIQYLCWSPV-GSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCS--------------------SCC------CSSBCCEEECSS-TTCEEEEE-TTEEEEES
T ss_pred EeecceEEEEEECCCCccccc--------------------eec------CcccccceECCC-CCEEEEEE-CCeEEEEe
Confidence 68999999988763100 001 125778999999 77888875 78999999
Q ss_pred CCCCCCCcccccCCCCCCccccccccccccCCCcc--------ccEEEEEEcCCCCEEEEEecC-CeEEEEECC
Q 004739 214 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDVN 278 (732)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~l~~sp~g~~l~~~~~d-g~v~iwd~~ 278 (732)
+.+++........ .....+ .|+.. ....+++|+|||++|+.++.| +.+.+|.+.
T Consensus 137 ~~~g~~~~l~~~~----~~~~v~-------~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 137 RPGDPPFQITFNG----RENKIF-------NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp STTSCCEECCCCC----BTTTEE-------ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred CCCCCcEEEecCC----CcCCeE-------cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence 9877543211000 000000 01110 012579999999999998865 555666543
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=3.4e-15 Score=155.48 Aligned_cols=196 Identities=10% Similarity=0.012 Sum_probs=119.2
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeeEE--EEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC-CCCCCCCCCCC
Q 004739 33 LLISGSDD--THINVWSY--SSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS-RFSGRGLDDNA 105 (732)
Q Consensus 33 ~lasg~~d--g~i~vWd~--~~~~~~~--~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~ 105 (732)
+|++|+.. +.|.+|++ .+++... .........+..++|+|+ |++|++++.+ .|.+|++. ++. .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spd--g~~l~~~~~~-~v~~~~~~~~g~--~----- 73 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHE--RKNIYGAAMK-KWSSFAVKSPTE--I----- 73 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTT--SSEEEEEEBT-EEEEEEEEETTE--E-----
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCC--CCEEEEEccc-eEEEEEECCCCC--E-----
Confidence 35556553 46887764 5665432 221134456889999999 5889988887 99999986 421 1
Q ss_pred CCCceeeccccCceeEEEEecCCCc-EEEEEe-------------CCCcEEEEECCC-CCCCCCCCCCCcccceEEeecc
Q 004739 106 ITPSALYQCHTRRVKKLAVEVGNPH-VVWSAS-------------EDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 106 ~~~~~~~~~h~~~v~~l~~~p~~~~-~l~s~s-------------~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
..+.....+ ..+.+++|+|++.. +++++. .++.+.+|++.. ++.. ..+....
T Consensus 74 -~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------~~~~~~~ 140 (365)
T 1jof_A 74 -VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------KNVQNYE 140 (365)
T ss_dssp -EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------EEEEEEE
T ss_pred -EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------ceEeeEE
Confidence 001111111 23556899996632 344543 689999999974 3210 0000000
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECC-CCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
..+...+.+++|+|+ +++|+++.. ++.|++||+. +++... . ..+ .. ..+ +
T Consensus 141 ----------~~~~~~~~~~~~spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~-~----------~~~---~~--~~~-g 192 (365)
T 1jof_A 141 ----------YQENTGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASGEVEL-V----------GSV---DA--PDP-G 192 (365)
T ss_dssp ----------CCTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTSCEEE-E----------EEE---EC--SST-T
T ss_pred ----------eCCCCcceEEEECCC-CCEEEEEcCCCCEEEEEEECCCCCEEE-e----------eeE---ec--CCC-C
Confidence 012336889999999 677777654 6899999998 543210 0 000 00 011 1
Q ss_pred ccEEEEEEcCCCCEEEEEec-CCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
..+..++|+|+|++|++++. ++.|.+|++..
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 24889999999999988876 78999998763
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=8.2e-16 Score=162.12 Aligned_cols=211 Identities=10% Similarity=0.034 Sum_probs=129.1
Q ss_pred hccccEeeeccCCc-----eeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEE
Q 004739 8 RLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV 79 (732)
Q Consensus 8 ~~~~~~~l~~h~~~-----V~~l~~s~dg~~lasg~~d---g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l 79 (732)
+.+.++.|..+... +..++|+|||++|+..... ..|.+||+.+++..... .++......+.|+|+ |++|
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l 95 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAF 95 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEE
Confidence 44455666665444 7889999999998877543 46888999888765433 333333444889999 5899
Q ss_pred EEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeE-------------------EEEecCCCcEEEEE-----
Q 004739 80 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA----- 135 (732)
Q Consensus 80 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------l~~~p~~~~~l~s~----- 135 (732)
+.++.++.|++||+.++.. ......+...... +.|+|++ +.++..
T Consensus 96 ~~~~~~~~l~~~d~~~~~~----------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~ 164 (396)
T 3c5m_A 96 FYVKNELNLMKVDLETLEE----------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHT 164 (396)
T ss_dssp EEEETTTEEEEEETTTCCE----------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHT
T ss_pred EEEEcCCcEEEEECCCCCc----------EEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccC
Confidence 9999999999999986432 1222222221111 2345543 333322
Q ss_pred eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecC-CCCCEEEEEeCC------Ce
Q 004739 136 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSD------AF 208 (732)
Q Consensus 136 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~~l~tg~~d------g~ 208 (732)
..+..|.+||+.+++.. .+. .+...+..+.|+| + +..|+..+.+ ..
T Consensus 165 ~~~~~l~~~d~~~g~~~-----------------------~~~---~~~~~~~~~~~sp~d-g~~l~~~~~~~~~~~~~~ 217 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELE-----------------------VIH---QDTAWLGHPIYRPFD-DSTVGFCHEGPHDLVDAR 217 (396)
T ss_dssp CCCEEEEEEETTTCCEE-----------------------EEE---EESSCEEEEEEETTE-EEEEEEEECSCSSSCSCC
T ss_pred CCcceEEEEECCCCcEE-----------------------eec---cCCcccccceECCCC-CCEEEEEecCCCCCCCce
Confidence 34557888887765411 111 1223678899999 5 6666665543 36
Q ss_pred EEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC-----CeEEEEECCC
Q 004739 209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNH 279 (732)
Q Consensus 209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d-----g~v~iwd~~~ 279 (732)
|.+||+...+.. .+. .......+..++|+|+|++|+.++.+ +.|++||+.+
T Consensus 218 l~~~d~~~~~~~-~l~-------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 218 MWLVNEDGSNVR-KIK-------------------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp CEEEETTSCCCE-ESS-------------------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred EEEEECCCCcee-Eee-------------------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 888888654311 110 10112247889999999987777553 3477777765
No 163
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=3.8e-15 Score=168.55 Aligned_cols=206 Identities=10% Similarity=0.005 Sum_probs=136.4
Q ss_pred EeeeccCCceeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeeEEEEccCCCcCeE---------EEEEe--cCCCCCE-
Q 004739 13 RELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL- 78 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~~lasg--~~dg~i~vWd~~~~~~~~~~~~~h~~~V~---------~~~~s--~~~~g~~- 78 (732)
..+.+|...|..++|++++-++++. +.++...||....+.....+ ..|...+. ...|+ |+ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeE
Confidence 4567899999999999887777777 56889999996555555556 56666666 66676 88 466
Q ss_pred EEEEEC-CCcEEEEEcC--C-CCCCCCCCCCCCCceeecc-----ccCceeEEEEecCCCcEEEEEeCC----------C
Q 004739 79 VVSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------G 139 (732)
Q Consensus 79 l~s~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s~s~d----------g 139 (732)
|+.++. +..|.++++. . +. ...+.. |...+..++|+|++ +.|+.++.+ .
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCcee
Confidence 665543 4556666654 1 21 233333 56788999999966 777777766 5
Q ss_pred cEEEEECCC------CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-------
Q 004739 140 TLRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------- 206 (732)
Q Consensus 140 ~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d------- 206 (732)
.|++||+.+ ++.. .+. ..+...+..++|+|| |++|+.++.+
T Consensus 162 ~i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp EEEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTT
T ss_pred EEEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCC
Confidence 799999876 3210 111 012235677899999 7888877754
Q ss_pred -CeEEEEECC-CCC--CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC--eEEEEECCC
Q 004739 207 -AFARLYDRR-MLP--PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH 279 (732)
Q Consensus 207 -g~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg--~v~iwd~~~ 279 (732)
..|++||+. ++. ....+. .++.. .+..++|+|||++++++..++ .|++||+.+
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~-------------------~~~~~-~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLL-------------------GGPEE-AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEE-------------------EETTB-CEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred CcEEEEEEECCCCcccccEEeC-------------------CCCCc-eEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence 379999998 441 111110 11222 588999999999777777788 555555544
No 164
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.65 E-value=7.8e-15 Score=151.63 Aligned_cols=225 Identities=10% Similarity=0.122 Sum_probs=142.7
Q ss_pred ccEeeeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEeCC-CC--eeEEEEccC--------CCcCeEEEEEecCCCCCE
Q 004739 11 QERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SR--KLLHSIETG--------HSANVFCTKFVPETSDEL 78 (732)
Q Consensus 11 ~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~-~~--~~~~~~~~~--------h~~~V~~~~~s~~~~g~~ 78 (732)
++..+..|...+..++|+|||++|++++ .++.|.+|++. ++ +.+..+... +...+.+++|+|++ ++
T Consensus 77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l 154 (347)
T 3hfq_A 77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RL 154 (347)
T ss_dssp EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CE
T ss_pred EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC--cE
Confidence 4555566888999999999999888887 67999999996 33 333333111 12348899999994 66
Q ss_pred EEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCC
Q 004739 79 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 79 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~ 157 (732)
+++...++.|.+|++... +.. .....+.. ....+..++|+|++..++++...++.|.+|++......
T Consensus 155 ~v~~~~~~~v~~~~~~~~-g~~------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~----- 222 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDA-GQL------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA----- 222 (347)
T ss_dssp EEEETTTTEEEEEEECTT-SCE------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----
T ss_pred EEEeCCCCEEEEEEECCC-CcE------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----
Confidence 676667899999999831 211 11122222 22367889999976435556677889999998752100
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCCCCCCcccccCCCCCCccccc
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF 236 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 236 (732)
...+..... ..........+..++|+|+ +++| ++...++.|.+||+.....+..+ ..+
T Consensus 223 -----~~~~~~~~~-----~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~~~----------~~~ 281 (347)
T 3hfq_A 223 -----FTQLGIVKT-----IPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLTLI----------QQI 281 (347)
T ss_dssp -----EEEEEEEES-----SCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEEEE----------EEE
T ss_pred -----eEEeeeeee-----cCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEEEe----------EEE
Confidence 000000000 0000011235789999999 6655 56667899999998732111110 000
Q ss_pred cccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECC
Q 004739 237 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 278 (732)
Q Consensus 237 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~ 278 (732)
..+.. .+..++|+|+|++|++++. ++.|.+|++.
T Consensus 282 -------~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 282 -------STEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp -------ECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred -------ecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 11111 3678999999999988876 4899999554
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.65 E-value=7.7e-14 Score=144.44 Aligned_cols=175 Identities=6% Similarity=-0.033 Sum_probs=114.0
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC-----CCcCeEEEEEe
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-----HSANVFCTKFV 71 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~-----h~~~V~~~~~s 71 (732)
.+.+++..+..+..+ .++|+|||++|+++. .+++|.+||+.+++.+.++... +......++|+
T Consensus 39 ~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 39 TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence 345666777766666 899999999999886 2678999999999988877322 23456789999
Q ss_pred cCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCcee-eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 72 PETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 72 ~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
|+ |++|+++.. ++.|.+||+.+.+ .+.. +. +. ....+.+.|++...+++.+.||.+.+|++..
T Consensus 117 pd--g~~l~v~n~~~~~~v~v~d~~~~~----------~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 117 TD--GKFIVLQNASPATSIGIVDVAKGD----------YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp TT--SSEEEEEEESSSEEEEEEETTTTE----------EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CC--CCEEEEECCCCCCeEEEEECCCCc----------EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 99 588888764 6899999998642 1333 22 22 2233567787767888999999999999865
Q ss_pred CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 149 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
..... .. .. . ..+... ...++ .+.++++ +..++..+.++.|.++|+...
T Consensus 183 ~g~~~----------~~-~~--~---~~~~~~--~~~~~-~~~~~~~-g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 183 DGKVA----------SQ-SR--S---KQMFSV--KDDPI-FIAPALD-KDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp TSSEE----------EE-EE--C---CCCSCT--TTSCB-CSCCEEC-SSEEEEEBTTSEEEEEECSSS
T ss_pred CCcEe----------ee-cc--c---cceEcC--CCCce-EEEeccc-CCEEEEEeCCCeEEEEEecCC
Confidence 22110 00 00 0 000000 00011 2223455 456666778899999998754
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.65 E-value=4.9e-15 Score=153.14 Aligned_cols=235 Identities=10% Similarity=0.043 Sum_probs=153.3
Q ss_pred hccccEeeeccC-CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCC-----CcCeEEEEEecCCCCCEEE
Q 004739 8 RLSQERELEGHQ-GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGH-----SANVFCTKFVPETSDELVV 80 (732)
Q Consensus 8 ~~~~~~~l~~h~-~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h-----~~~V~~~~~s~~~~g~~l~ 80 (732)
+.+.++.+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+...+ ...+.+++|+|+ |++|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~ 107 (349)
T 1jmx_B 30 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD--GKEVY 107 (349)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT--SSEEE
T ss_pred CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCC--CCEEE
Confidence 445556665443 2678999999998655 55578999999999999887773333 334789999999 58888
Q ss_pred EEECC------------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 81 SGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 81 s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
+++.+ +.|.+||+.++... ..+..+. +...+.+++|+|++ +++ .++ +.|.+||+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~dg-~l~-~~~--~~i~~~d~~~ 175 (349)
T 1jmx_B 108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADDG-SLY-VAG--PDIYKMDVKT 175 (349)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTTS-CEE-EES--SSEEEECTTT
T ss_pred EEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCCC-cEE-Ecc--CcEEEEeCCC
Confidence 88765 89999999863211 1123333 34468899999976 544 444 3499999988
Q ss_pred CCCCCCCCCCCc-----------------cc---------------------------ceEEeeccCCccccccCCCCCc
Q 004739 149 GSSCPPAGSSHQ-----------------EC---------------------------RNILLDLRCGAKRSLADPPKQT 184 (732)
Q Consensus 149 ~~~~~~~~~~~~-----------------~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 184 (732)
++.......... .. ....++..++....+.. ....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 254 (349)
T 1jmx_B 176 GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLT 254 (349)
T ss_dssp CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE-EECS
T ss_pred CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc-ccCC
Confidence 764321111100 00 00001222221111110 1122
Q ss_pred cceEEEEecC-CCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE
Q 004739 185 LSLKSCDISS-TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 263 (732)
Q Consensus 185 ~~v~~i~~~~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l 263 (732)
..+.+++|+| + +++++++ ++.|++||+.+++.+..+. .++ .+.+++|+|+|++|
T Consensus 255 ~~~~~~~~sp~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~~---~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 255 ELYFTGLRSPKD-PNQIYGV--LNRLAKYDLKQRKLIKAAN-------------------LDH---TYYCVAFDKKGDKL 309 (349)
T ss_dssp SCEEEEEECSSC-TTEEEEE--ESEEEEEETTTTEEEEEEE-------------------CSS---CCCEEEECSSSSCE
T ss_pred CcceeeEecCCC-CCEEEEE--cCeEEEEECccCeEEEEEc-------------------CCC---CccceEECCCCCEE
Confidence 3567889999 8 7788877 8899999998875443321 111 36689999999999
Q ss_pred EEEecCCeEEEEECCCCCC
Q 004739 264 LLSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 264 ~~~~~dg~v~iwd~~~~~~ 282 (732)
++++.++.|++||+.+++.
T Consensus 310 ~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EEESBSSEEEEEETTTTEE
T ss_pred EEecCCCeEEEEeccccce
Confidence 9988899999999988653
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.62 E-value=7.2e-14 Score=144.69 Aligned_cols=191 Identities=8% Similarity=0.068 Sum_probs=122.1
Q ss_pred CCCEEEEEe------CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcEEEEEc
Q 004739 30 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 93 (732)
Q Consensus 30 dg~~lasg~------~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i~vwd~ 93 (732)
+++++.+.. .|+.|.+||..+++.+.++ ..+..+ .++|+|+ |+++++++ .++.|.+||+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence 566666553 3779999999999998888 455554 8999999 58888876 3678999998
Q ss_pred CCCCCCCCCCCCCCCceeecc------ccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceE
Q 004739 94 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI 165 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (732)
.+.+ .+..+.. +......++++|++ ++|+++.. ++.|.+||+.+++..
T Consensus 89 ~t~~----------~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~------------- 144 (361)
T 2oiz_A 89 DKLT----------FEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYV------------- 144 (361)
T ss_dssp TTCC----------EEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred cCCc----------EEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence 8632 1333321 23456789999966 66666653 678999999887521
Q ss_pred Eee-ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCcccccccccccc
Q 004739 166 LLD-LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 166 ~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.. +.. .....+.+.|++...+++.+.||.+.+|++.. ++....... ...+
T Consensus 145 -~~~i~~-------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~------- 196 (361)
T 2oiz_A 145 -EDVTAA-------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMF------- 196 (361)
T ss_dssp -EEEGGG-------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCS-------
T ss_pred -EEEecC-------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceE-------
Confidence 00 000 01223556777567888899999999999865 221100000 0000
Q ss_pred CCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..... ++ .+.++|++..++..+.++.|+++|+..
T Consensus 197 ~~~~~-~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~ 230 (361)
T 2oiz_A 197 SVKDD-PI-FIAPALDKDKAHFVSYYGNVYSADFSG 230 (361)
T ss_dssp CTTTS-CB-CSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred cCCCC-ce-EEEecccCCEEEEEeCCCeEEEEEecC
Confidence 00000 11 233467777788788889999999875
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=5e-14 Score=146.60 Aligned_cols=262 Identities=9% Similarity=0.061 Sum_probs=159.1
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeeEEEEccCCCcCeEEEEEecCCCCCE--EEEEE-----------
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA----------- 83 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~-~~~~~~~~~~~h~~~V~~~~~s~~~~g~~--l~s~~----------- 83 (732)
....+..++|+|||++|++++.+ .|.+|++. +++..........+.+.+++|+|+ |++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence 34578899999999999998887 99999997 777654331111123567899999 473 44543
Q ss_pred --CCCcEEEEEcCCCCCCCCCCCCCCCceeec----cccCceeEEEEecCCCcEEEEEe-CCCcEEEEECC-CCCCCCCC
Q 004739 84 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPA 155 (732)
Q Consensus 84 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~-~~~~~~~~ 155 (732)
.++.+.+|++... +.. ...+. .+...+.+++|+|++ ++++++. .++.|++||+. +++..
T Consensus 115 ~~~~g~v~v~~~~~~-g~~--------~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~--- 181 (365)
T 1jof_A 115 YKFAGYGNVFSVSET-GKL--------EKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVE--- 181 (365)
T ss_dssp SSSCCEEEEEEECTT-CCE--------EEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEE---
T ss_pred ecCCceEEEEccCCC-CcC--------cceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEE---
Confidence 6899999999742 111 11222 245679999999966 6666554 46799999997 44310
Q ss_pred CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC-CCeEEEEECCC--CCCCcccccCCCCCCc
Q 004739 156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRM--LPPLTSCQKRMSPPPC 232 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~--~~~~~~~~~~~~~~~~ 232 (732)
.+.. +. .+.+...+..++|+|+ +++|++++. ++.|.+|++.. ++.......
T Consensus 182 ---------~~~~--------~~-~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~------- 235 (365)
T 1jof_A 182 ---------LVGS--------VD-APDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHHS------- 235 (365)
T ss_dssp ---------EEEE--------EE-CSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-------
T ss_pred ---------Eeee--------Ee-cCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccce-------
Confidence 0000 00 0011235789999999 777777664 78999998753 321100000
Q ss_pred cccccccccccCCCcc-----ccEEEEE-EcCCCCEEEEEecC-C-----eEEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 233 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 233 ~~~~~~~~~~~~~~~~-----~~i~~l~-~sp~g~~l~~~~~d-g-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
+... +... .++.. ..+..++ |+|+|++|+++..+ + .|.+|++...+...... ...
T Consensus 236 ~~~~-~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~---------~~~- 302 (365)
T 1jof_A 236 FPLI-PPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL---------FLS- 302 (365)
T ss_dssp EESS-CTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE---------EEE-
T ss_pred EEcC-CCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee---------eee-
Confidence 0000 0000 11110 0378899 99999999887653 3 89999996322111100 000
Q ss_pred CCCCccCCCCCCccCC---CccccccccccCc-chhhHHHHHHHhhhh
Q 004739 301 TLNGLELQPPIHDFLQ---TNIRVRGEVATGL-GKCRMLVEIARNSLE 344 (732)
Q Consensus 301 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~-d~~~~l~~~~~~~~~ 344 (732)
..+...+..++|+| ||++++ .+.. ++.+.+ |.++
T Consensus 303 --~~~~~~~~~~a~sp~~~dg~~l~---v~~~~~~~v~v-----~~~~ 340 (365)
T 1jof_A 303 --PTPTSGGHSNAVSPCPWSDEWMA---ITDDQEGWLEI-----YRWK 340 (365)
T ss_dssp --ECSSCCTTCCCEEECTTCTTEEE---EECSSSCEEEE-----EEEE
T ss_pred --ecCCCCcccceecCCCcCCCEEE---EEEcCCCeEEE-----EEEc
Confidence 01122455678888 899887 6654 477777 7665
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.8e-13 Score=140.10 Aligned_cols=255 Identities=13% Similarity=0.047 Sum_probs=170.3
Q ss_pred CCceeEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET 74 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~d------------------------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~ 74 (732)
-+.+.+++++|+|+++++...+ ++|.+||..+++.+..+..++-.....++++|+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~- 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD- 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence 4679999999999999988777 479999999999887774455568899999998
Q ss_pred CCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee---------ccccCceeEEEEecCCCcEEEEEe-CCCcEEEE
Q 004739 75 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH 144 (732)
Q Consensus 75 ~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vw 144 (732)
|+++++...++.|++||..... ..+..+ .++......|+++|++++++++.+ .++.|++|
T Consensus 102 -g~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 102 -GNYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp -SCEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred -CCEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence 5888888889999999986421 013333 344557899999995558888886 68999999
Q ss_pred ECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccc
Q 004739 145 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ 224 (732)
Q Consensus 145 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~ 224 (732)
|. +++.. ..+... +.. -...+.+......++++|+++.++++...++.|++||..+++.+..+.
T Consensus 172 ~~-~g~~~------------~~~~~~-g~~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 172 SP-SGKFV------------TQWGEE-SSG--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK 235 (329)
T ss_dssp CT-TSCEE------------EEECEE-CCS--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred cC-CCCEE------------EEeccC-CCC--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence 94 33311 001000 000 000012233578999999867778888889999999998765544331
Q ss_pred cCCCCCCccccccccccccCCCccccEEEEEEcC------CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeee
Q 004739 225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF 298 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (732)
. ..+. ..+..++|+| +|+..++...+..|++|++.+++....+.
T Consensus 236 ~------------------~~~~-~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~----------- 285 (329)
T 3fvz_A 236 H------------------ASFG-RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK----------- 285 (329)
T ss_dssp C------------------TTTT-TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-----------
T ss_pred c------------------cccC-CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-----------
Confidence 1 1111 2478899999 33322223334589999998865332211
Q ss_pred ccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004739 299 TPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l 335 (732)
...++...+..++++|+|..++ +...++.+..
T Consensus 286 --~~~~~~~~p~~ia~~~dG~lyv---ad~~~~~I~~ 317 (329)
T 3fvz_A 286 --PVRKHFDMPHDIVASEDGTVYI---GDAHTNTVWK 317 (329)
T ss_dssp --CSSSCCSSEEEEEECTTSEEEE---EESSSCCEEE
T ss_pred --CCCCccCCeeEEEECCCCCEEE---EECCCCEEEE
Confidence 0122334466788899997776 6666776666
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=2.3e-13 Score=153.85 Aligned_cols=162 Identities=12% Similarity=0.017 Sum_probs=103.2
Q ss_pred cCCCcCeEEEEEecCCCCCEEEEE--ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee---------EEEEe--
Q 004739 59 TGHSANVFCTKFVPETSDELVVSG--AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK---------KLAVE-- 125 (732)
Q Consensus 59 ~~h~~~V~~~~~s~~~~g~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~-- 125 (732)
.+|...+..++|+++ +-++++. +.++...||..... +. ...+..|...+. ...|+
T Consensus 20 ~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~-~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~S 87 (662)
T 3azo_A 20 ASRSGRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRAD-GA---------EESALPAPWNVRNRVFEYSGFPWAGVPR 87 (662)
T ss_dssp HHTCSCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTT-SC---------EEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred hhcCCccceeEEcCC--eEEEEecCcccCCcEEEEEECCC-CC---------cceeCCCCccccccccccCCccceeeee
Confidence 468889999999987 3555665 45788999996321 21 344445555544 56566
Q ss_pred cCCCcEEEEEe-CCCcEEEEECC--C-CCCCCCCCCCCcccceEEeeccCCccccccCCC--CCccceEEEEecCCCCCE
Q 004739 126 VGNPHVVWSAS-EDGTLRQHDFR--Q-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPP--KQTLSLKSCDISSTRPHL 199 (732)
Q Consensus 126 p~~~~~l~s~s-~dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~ 199 (732)
|++..+|+..+ .+..|.+|++. . ++.. .+.... .+...+.+++|+|+ ++.
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-----------------------~l~~~~~~~~~~~~~~~~~spD-g~~ 143 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-----------------------PLTPVSAVGGGLRWADPVLLPE-RGE 143 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-----------------------ECSCCCCSTTCEEEEEEEEETT-TTE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-----------------------eccCCccCCCCccccCcEECCC-CCE
Confidence 87644154444 35667777765 2 3210 111110 13457889999999 788
Q ss_pred EEEEeCC----------CeEEEEECCC------CCCCcccccCCCCCCccccccccccccC-CCccccEEEEEEcCCCCE
Q 004739 200 LLVGGSD----------AFARLYDRRM------LPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSPNGEE 262 (732)
Q Consensus 200 l~tg~~d----------g~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~ 262 (732)
|++++.+ ..|++||+.+ ++. ..+ . .+.. .+..++|+|||++
T Consensus 144 l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l--------------------~~~~~~-~~~~~~~SpDG~~ 201 (662)
T 3azo_A 144 VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL--------------------SDDAHR-FVTGPRLSPDGRQ 201 (662)
T ss_dssp EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES--------------------SCSCSS-EECCCEECTTSSE
T ss_pred EEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE--------------------EecCCC-cccCceECCCCCE
Confidence 8888776 5899999987 321 111 1 1222 4778899999999
Q ss_pred EEEEecCC--------eEEEEECC
Q 004739 263 VLLSYSGE--------HVYLMDVN 278 (732)
Q Consensus 263 l~~~~~dg--------~v~iwd~~ 278 (732)
|+.++.++ .|++||+.
T Consensus 202 la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 202 AVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEEEEECTTCCTTTCEEEEEEEEC
T ss_pred EEEEECCCCCCCCCCcEEEEEEEC
Confidence 99887553 68888877
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.55 E-value=2.9e-14 Score=163.01 Aligned_cols=163 Identities=11% Similarity=0.107 Sum_probs=105.9
Q ss_pred cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccC-----ceeEEEEecCCCcEEEEEeC
Q 004739 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR-----RVKKLAVEVGNPHVVWSASE 137 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~p~~~~~l~s~s~ 137 (732)
....++.|+|+ |++++++ |++|++||+.++.. ...+.+|.. ....+.|+|++ ++|+.++.
T Consensus 17 ~~~~~~~w~~d--g~~~~~~--~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~ 81 (740)
T 4a5s_A 17 LKLYSLRWISD--HEYLYKQ--ENNILVFNAEYGNS----------SVFLENSTFDEFGHSINDYSISPDG-QFILLEYN 81 (740)
T ss_dssp CCCCCEEECSS--SEEEEEE--TTEEEEEETTTCCE----------EEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEE
T ss_pred ccccccEECCC--CcEEEEc--CCcEEEEECCCCce----------EEEEechhhhhhcccccceEECCCC-CEEEEEEC
Confidence 34668999999 5788876 99999999987542 333444442 23458899965 77777776
Q ss_pred C---------CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCe
Q 004739 138 D---------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 208 (732)
Q Consensus 138 d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~ 208 (732)
+ +.+.+||+.+++.. ....+...+...+|+|| |+.||.+. ++.
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~SPd-G~~la~~~-~~~ 133 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQLI--------------------------TEERIPNNTQWVTWSPV-GHKLAYVW-NND 133 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTEEC--------------------------CSSCCCTTEEEEEECSS-TTCEEEEE-TTE
T ss_pred CeeeEEEccceEEEEEECCCCcEE--------------------------EcccCCCcceeeEECCC-CCEEEEEE-CCe
Confidence 5 55679999887521 11223446889999999 77888774 789
Q ss_pred EEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc--------ccEEEEEEcCCCCEEEEEecC-CeEEEEECCC
Q 004739 209 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--------LHLTHVTFSPNGEEVLLSYSG-EHVYLMDVNH 279 (732)
Q Consensus 209 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~l~~sp~g~~l~~~~~d-g~v~iwd~~~ 279 (732)
|++||+.+++... +.... .....+ .++.. .....+.|||||++|+.++.| +.|.+|++..
T Consensus 134 i~~~~~~~~~~~~-lt~~g---~~~~~~-------~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~ 202 (740)
T 4a5s_A 134 IYVKIEPNLPSYR-ITWTG---KEDIIY-------NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF 202 (740)
T ss_dssp EEEESSTTSCCEE-CCSCC---BTTTEE-------ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred EEEEECCCCceEE-EcCCC---Ccccee-------cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence 9999998765322 11000 000000 01100 012358999999999988765 4588887654
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=2.8e-12 Score=128.36 Aligned_cols=161 Identities=7% Similarity=0.090 Sum_probs=107.9
Q ss_pred CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee------ccccCceeEEEEecCCCcEEE
Q 004739 60 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVW 133 (732)
Q Consensus 60 ~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~l~ 133 (732)
++-..+.+++++++ |.++++...++.|.+||.... .+..+ .++...+..+++.+.++++++
T Consensus 27 g~~~~p~~v~~~~~--g~l~v~~~~~~~i~~~d~~g~-----------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ--NDIIVADTNNHRIQIFDKEGR-----------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp TCBSCEEEEEECTT--CCEEEEEGGGTEEEEECTTSC-----------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred CccCCCceEEECCC--CCEEEEECCCCEEEEECCCCc-----------EEEEecccCCCcccccCceEEEEEcCCCeEEE
Confidence 45567899999998 588888888999999997631 12222 234567889999543556666
Q ss_pred EEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEE
Q 004739 134 SASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY 212 (732)
Q Consensus 134 s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iw 212 (732)
+... ++.|.+||. +++.. ..+. ......+.+++++|+ ++++++...++.|++|
T Consensus 94 ~~~~~~~~i~~~d~-~g~~~--------------~~~~----------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 94 TERSPTHQIQIYNQ-YGQFV--------------RKFG----------ATILQHPRGVTVDNK-GRIIVVECKVMRVIIF 147 (286)
T ss_dssp EECGGGCEEEEECT-TSCEE--------------EEEC----------TTTCSCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred EcCCCCCEEEEECC-CCcEE--------------EEec----------CccCCCceEEEEeCC-CCEEEEECCCCEEEEE
Confidence 6543 789999993 44311 0000 012235789999998 6788887788999999
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
|... +.+..+.. .++.. .+..++++|+|+++++...++.|++||...
T Consensus 148 ~~~g-~~~~~~~~------------------~~~~~-~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g 194 (286)
T 1q7f_A 148 DQNG-NVLHKFGC------------------SKHLE-FPNGVVVNDKQEIFISDNRAHCVKVFNYEG 194 (286)
T ss_dssp CTTS-CEEEEEEC------------------TTTCS-SEEEEEECSSSEEEEEEGGGTEEEEEETTC
T ss_pred cCCC-CEEEEeCC------------------CCccC-CcEEEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 9653 22211100 01112 488999999999777777789999998643
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=3.3e-12 Score=138.97 Aligned_cols=205 Identities=10% Similarity=0.042 Sum_probs=136.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004739 29 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 29 ~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
|.+.++++...+++|.++|..+++.+.++. ....+..+.|+|+ |+++++++.|+.|.+||+..... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~--~g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD--TGYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe--CCCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence 444567777889999999999999999884 3345779999999 58999999999999999952112 12
Q ss_pred ceeeccccCceeEEEEe----cCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCC-
Q 004739 109 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ- 183 (732)
Q Consensus 109 ~~~~~~h~~~v~~l~~~----p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (732)
+..+.. ......++|+ |++..++++...++.|.++|..+.+.+. .+.+ +.. .......|
T Consensus 233 v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~------------~i~~--~~~-~~~~~~~~p 296 (567)
T 1qks_A 233 VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK------------IQST--RGM-TYDEQEYHP 296 (567)
T ss_dssp EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE------------EEEC--CEE-CTTTCCEES
T ss_pred eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE------------EEec--ccc-ccccccccC
Confidence 444443 3346799999 6664455555567999999988766321 0110 000 00000001
Q ss_pred ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEE
Q 004739 184 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV 263 (732)
Q Consensus 184 ~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l 263 (732)
...+..+.+++++..+++....+|.|.++|....+.+... .. ..+.....+.|+|+|+++
T Consensus 297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~-----------~i---------~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT-----------EI---------SAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE-----------EE---------ECCSSEEEEEECTTSCEE
T ss_pred CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee-----------ee---------eccccccCceECCCCCEE
Confidence 1156778888886666666667799999998764321110 00 001136788999999998
Q ss_pred EEEec-CCeEEEEECCCCC
Q 004739 264 LLSYS-GEHVYLMDVNHAG 281 (732)
Q Consensus 264 ~~~~~-dg~v~iwd~~~~~ 281 (732)
+++.. ++.|.++|+.+++
T Consensus 357 ~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 357 ITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp EEEEGGGTEEEEEETTTTE
T ss_pred EEEeCCCCeEEEEECCCCc
Confidence 87764 7899999999853
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.51 E-value=2.5e-12 Score=131.53 Aligned_cols=179 Identities=8% Similarity=0.024 Sum_probs=112.6
Q ss_pred CcCeEEEEEecCCCCCEEEEEECC------------------------CcEEEEEcCCCCCCCCCCCCCCCceeec-ccc
Q 004739 62 SANVFCTKFVPETSDELVVSGAGD------------------------AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHT 116 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~ 116 (732)
-+.+.+++++|+ |+++++...+ ++|.+||..++.. +..+. ++.
T Consensus 23 l~~v~~va~d~~--G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----------~~~~~~~~~ 90 (329)
T 3fvz_A 23 PGQVSGVALDSK--NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----------LQSSGKNLF 90 (329)
T ss_dssp CSCEEEEEECTT--CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------EEEECTTTC
T ss_pred cCCceEEEECCC--CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------EeccCCCcc
Confidence 356899999998 5888887777 4799999875321 22222 344
Q ss_pred CceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004739 117 RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 196 (732)
Q Consensus 117 ~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 196 (732)
..+..++++|++ +++++...++.|++||........ ..+.... .......+......++++|++
T Consensus 91 ~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~-------------~~~~~~~--~~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 91 YLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPL-------------LILGRSM--QPGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp SSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCS-------------EEESBTT--BCCCSTTCCSSEEEEEECTTT
T ss_pred CCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEE-------------EEecccC--CCCCCccccCCCcEEEEeCCC
Confidence 578999999955 788888888999999975442110 0000000 000011233467899999944
Q ss_pred CCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC-CCEEEEEecCCeEEE
Q 004739 197 PHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYL 274 (732)
Q Consensus 197 ~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~~~dg~v~i 274 (732)
+.++++.+ .++.|++||. +++.+..+....... ....++.. ....++++|+ +.++++...++.|++
T Consensus 155 g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~----------~~~~~~~~-~p~gia~d~~~g~l~v~d~~~~~I~~ 222 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGS----------SPRPGQFS-VPHSLALVPHLDQLCVADRENGRIQC 222 (329)
T ss_dssp CCEEEEECSSCCEEEEECT-TSCEEEEECEECCSS----------SCCTTEES-CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCC----------CCCCcccC-CCcEEEEECCCCEEEEEECCCCEEEE
Confidence 88888886 6899999994 343332221100000 00001111 3789999998 666666677899999
Q ss_pred EECCCC
Q 004739 275 MDVNHA 280 (732)
Q Consensus 275 wd~~~~ 280 (732)
|+..++
T Consensus 223 ~~~~~G 228 (329)
T 3fvz_A 223 FKTDTK 228 (329)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 998863
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.51 E-value=3.1e-12 Score=131.16 Aligned_cols=198 Identities=6% Similarity=0.021 Sum_probs=134.2
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
...|.+++|++++..++..+.++.++.| .++....+ ..+...+.+++|+|+ |++++++..++.|.+||..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~--g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEI-SKKGLQLEGLNFDRQ--GQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEE-ESSCCCEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEE-eccCccccCcEECCC--CCEEEEECCCCEEEEEeCCCCcE
Confidence 3457888999998888877888999999 35555566 466677899999998 57777888899999999875321
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
......+...+.+++++|++ +++++...+ +.|.+||..++... .+..
T Consensus 79 ----------~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~------------~~~~------ 129 (333)
T 2dg1_A 79 ----------KRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQ------------DIIE------ 129 (333)
T ss_dssp ----------EEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCE------------EEEC------
T ss_pred ----------EEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEE------------EEEc------
Confidence 12222456789999999965 777776665 68999998766421 0000
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeC------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
.......+.++.++|+ ++++++... .+.|..+|..+.+.. .+ .....
T Consensus 130 -----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~--------------------~~~~~ 182 (333)
T 2dg1_A 130 -----DLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI--------------------IQNIS 182 (333)
T ss_dssp -----SSSSCCCEEEEEECTT-SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EE--------------------EEEES
T ss_pred -----cCccCCcccceEECCC-CCEEEEeccccccCCCceEEEEeCCCCEEE-Ee--------------------ecCCC
Confidence 0012236889999998 677766553 245666665543211 10 00111
Q ss_pred ccEEEEEEcCCCCEEEEE-ecCCeEEEEECCC
Q 004739 249 LHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH 279 (732)
Q Consensus 249 ~~i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~ 279 (732)
.+..++|+|+|++|+.+ +.++.|++|++.+
T Consensus 183 -~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 183 -VANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp -SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -cccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 37889999999876555 4578999999864
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.50 E-value=1.9e-12 Score=133.50 Aligned_cols=71 Identities=8% Similarity=0.019 Sum_probs=54.1
Q ss_pred ccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcE-EEEcCCCCCCccccCCCCCC
Q 004739 604 LGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTI-KIWTPSASVPSIVSGGAAGP 682 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i-~vW~~~~~~~~~~~~gh~~~ 682 (732)
|+ || ++++++.|+.++|| +.+|+.. .+..+...|.+++|+| .++++++.+++. +||.+. ++ ...+.+|+..
T Consensus 271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 271 KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 58 88 99999999999999 8877764 4555688999999999 677777777765 888776 43 4445555543
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.46 E-value=7.5e-12 Score=131.26 Aligned_cols=251 Identities=8% Similarity=-0.031 Sum_probs=151.6
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE--ecCCCCCEEEEE---
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDELVVSG--- 82 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~--s~~~~g~~l~s~--- 82 (732)
+.+..+...+|...+..++|+|||+.|+.++.++.|++||+.+++....+ ..+...+....| +|+ +.+++..
T Consensus 69 ~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~~l~~~~~~ 145 (388)
T 3pe7_A 69 TQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CTKLVGIEIR 145 (388)
T ss_dssp TCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SSEEEEEEEE
T ss_pred CCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CCeecccccc
Confidence 34444555566666667899999999999999999999999999877655 455555544444 677 5777643
Q ss_pred -------------------ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEec-CCCcEEEEEeCC----
Q 004739 83 -------------------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASED---- 138 (732)
Q Consensus 83 -------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~d---- 138 (732)
..+..|.+||+.++. ...+..+...+..+.|+| ++ +.|+.++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~ 213 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDL 213 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTT
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCC-CEEEEEEecCCCC
Confidence 234679999998643 344555677899999999 76 666665543
Q ss_pred --CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCC----eEEE
Q 004739 139 --GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA----FARL 211 (732)
Q Consensus 139 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg----~v~i 211 (732)
..|.++|+...+.. .+.. ......+....|+|+ ++.|+. +..++ .|++
T Consensus 214 ~~~~l~~~d~~~~~~~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 214 VDARMWLINEDGTNMR-----------------------KVKT-HAEGESCTHEFWVPD-GSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp SSCSEEEEETTSCCCE-----------------------ESCC-CCTTEEEEEEEECTT-SSCEEEEEEETTCCCEEEEE
T ss_pred CcceEEEEeCCCCceE-----------------------Eeee-CCCCcccccceECCC-CCEEEEEecCCCCCcceEEE
Confidence 36777777654311 1111 011125678899999 555544 33222 3999
Q ss_pred EECCCCCCCcccccCCCCCCccccccccccccCCCcc--ccEEEEEEcCCCCEEEEE---------ecCCeEEEEECCCC
Q 004739 212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS--LHLTHVTFSPNGEEVLLS---------YSGEHVYLMDVNHA 280 (732)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~sp~g~~l~~~---------~~dg~v~iwd~~~~ 280 (732)
||+.+++..... .+ .++.. .....++|+|+|+.|+.. ..+..|++||+.++
T Consensus 269 ~d~~~g~~~~l~-----------~~-------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 269 ADPETLENRQLT-----------SM-------PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp ECTTTCCEEEEE-----------EE-------CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EecCCCceEEEE-----------cC-------CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 999887531100 00 01000 001123799999988764 44679999999885
Q ss_pred CCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 281 GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
+.. .+..+...... ........+...+|+|||+.++
T Consensus 331 ~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 331 TQH-RVARHDTSWKV-----FEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp EEE-EEEECCCCCCC-----BTTBSSTTCCCCEECTTSSEEE
T ss_pred ceE-EeccccCcccc-----cccccccCCCCccCCCCCCEEE
Confidence 432 22221110000 0011112356778999999887
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.45 E-value=1.7e-11 Score=139.53 Aligned_cols=68 Identities=12% Similarity=-0.025 Sum_probs=55.4
Q ss_pred ccCCCCEEEEecCCCc--EEEEEcCcccEEEEEecCcccEEEEeecCCCCeEE-Eec---CCCcEEEEcCCCCC
Q 004739 604 LGQRGDYIASGSDDGR--WFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVA-TSG---IDNTIKIWTPSASV 671 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg~--i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~-S~s---~D~~i~vW~~~~~~ 671 (732)
+++++.+++++..|+. |++||+.+|+.+..+..|.+.|.+++++|++..|+ +.+ ..++|.+||+.+++
T Consensus 343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4678889999999985 56678778998899999988999999999997544 333 45789999998877
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.42 E-value=5.7e-10 Score=111.97 Aligned_cols=202 Identities=9% Similarity=0.041 Sum_probs=137.2
Q ss_pred eeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 15 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
+..+...+.++++.++|+++++...++.|.+||.. ++........+...+.+++++++ |.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECCC
Confidence 44566789999999999988877668899999988 55443221235577999999998 5777776668889999876
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
. .. . ...+......+.++++.|++ +++++...++.|.+||. +++.. .+.
T Consensus 87 g---~~------~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~-------------~~~------ 135 (299)
T 2z2n_A 87 G---II------K-EYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIR-------------EYE------ 135 (299)
T ss_dssp S---CE------E-EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-------------EEE------
T ss_pred C---cE------E-EEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEE-------------Eec------
Confidence 2 11 0 11122244578899999854 77777777789999998 44310 000
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
.+.....+.+++++++ ++++++...++.|..||. +++.. .+. . ..... .+..+
T Consensus 136 -----~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~~------------~------~~~~~-~~~~i 188 (299)
T 2z2n_A 136 -----LPNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDIT-EFK------------I------PTPAS-GPVGI 188 (299)
T ss_dssp -----CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEE-EEE------------C------SSTTC-CEEEE
T ss_pred -----CCCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEE-Eee------------C------CCCCC-cceeE
Confidence 0112236789999998 677777767789999998 44321 110 0 01111 47889
Q ss_pred EEcCCCCEEEEEecCCeEEEEEC
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~ 277 (732)
+++++|++.++...++.|.+||.
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT
T ss_pred EECCCCCEEEEccCCceEEEECC
Confidence 99999986666666788998887
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.41 E-value=3.4e-11 Score=120.34 Aligned_cols=201 Identities=9% Similarity=0.133 Sum_probs=140.3
Q ss_pred cCCceeEEEE-cCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCC
Q 004739 18 HQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR 95 (732)
Q Consensus 18 h~~~V~~l~~-s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~ 95 (732)
|...+.++++ .++++++++... ++.|++|| .+++.+..+...+...+.+++++|+ |+++++...++.|.+||...
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~g 151 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQNG 151 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTTS
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCCC
Confidence 4567889999 578877777643 78999999 6677777774445567899999998 57888877889999999652
Q ss_pred CCCCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 96 FSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
. .+..+. .+...+.+++++|++ +++++...++.|++||..... +..+.
T Consensus 152 ---~--------~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~---------------~~~~~--- 201 (286)
T 1q7f_A 152 ---N--------VLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY---------------LRQIG--- 201 (286)
T ss_dssp ---C--------EEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE---------------EEEES---
T ss_pred ---C--------EEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE---------------EEEEc---
Confidence 1 123332 345578999999954 788777788999999974321 11100
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCC-eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
..++...+.+++++++ ++++++...++ .|++||.. ++.+..+.. ..... .+.
T Consensus 202 ------~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~------------------~~~~~-~~~ 254 (286)
T 1q7f_A 202 ------GEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISALES------------------KVKHA-QCF 254 (286)
T ss_dssp ------CTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEEEEE------------------SSCCS-CEE
T ss_pred ------cCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEEEcc------------------cCCCC-cce
Confidence 0112236789999998 77888887776 99999964 332222210 01111 377
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+++++|+|+++++ +.++.|++|++..
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 8999999986655 6799999999866
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.39 E-value=6.2e-11 Score=121.40 Aligned_cols=214 Identities=8% Similarity=0.057 Sum_probs=141.7
Q ss_pred cccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC----
Q 004739 10 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---- 85 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---- 85 (732)
+....+.++...+.+++|+|+|++++++..++.|.+||..+++..... ..+...+.+++|+|+ |+++++...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~ 111 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKST 111 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSC
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC--CcEEEEeCCCCCCC
Confidence 344556677788899999999998888888999999999888766544 356678999999998 5777777666
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeC------CCcEEEEECCCCCCCCCCCC
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGS 157 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~ 157 (732)
+.|.+||..+... ...+ ..+...+.+++++|++ +++++... .+.|..+|..+++..
T Consensus 112 ~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----- 175 (333)
T 2dg1_A 112 GGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----- 175 (333)
T ss_dssp CEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE-----
T ss_pred ceEEEEeCCCCEE----------EEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE-----
Confidence 6899999875321 1111 1234578999999965 77766553 245555555433210
Q ss_pred CCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECCC-CCCCcccccCCCCCCcccc
Q 004739 158 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNY 235 (732)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~ 235 (732)
.+. .....+..++|+|+ ++.| ++...++.|.+||+.+ +..+..+.. ..
T Consensus 176 -------~~~--------------~~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~--------~~ 225 (333)
T 2dg1_A 176 -------PII--------------QNISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGA--------TI 225 (333)
T ss_dssp -------EEE--------------EEESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------EE
T ss_pred -------Eee--------------cCCCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccc--------eE
Confidence 000 01124678999999 6644 5555678999999864 222211100 00
Q ss_pred ccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 236 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
+ ... .++ ..+..++++++|+++++...++.|.+||..
T Consensus 226 ~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 226 P--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp E--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred E--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 0 000 111 137889999999977777778999999984
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=1e-11 Score=140.81 Aligned_cols=205 Identities=10% Similarity=0.017 Sum_probs=127.2
Q ss_pred ccCCceeEEEEcCCCCEEE-----EEeCCCcEEEEeCCCCeeE-EEEccCCCcCeEEEEEecCCCCCEEEEEECCCc---
Q 004739 17 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAE--- 87 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~la-----sg~~dg~i~vWd~~~~~~~-~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~--- 87 (732)
+|...+..++|||||++|| .|+.+.+|++||+.+++.+ ....... ....++|+|+ |+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspD--g~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPD--SKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTT--SSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc--cccceEEecC--CCEEEEEEecCCCCC
Confidence 4556799999999999999 4445578999999999865 2111111 1268999999 588999888776
Q ss_pred ----------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCCCC
Q 004739 88 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCP 153 (732)
Q Consensus 88 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg----~i~vwd~~~~~~~~ 153 (732)
|++|++.++.... ..+.....|...+..+.|+|++ ++|+..+.++ .|.+|+..+++.
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-- 264 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-- 264 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC--
T ss_pred ccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce--
Confidence 9999998754211 1233344456678899999977 5555555444 566665433321
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEe---CCCeEEEEECCCCCCCcccccCCCCC
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSPP 230 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~~ 230 (732)
..+.. +...+....+ ++++ +++... .++.|.+||+.+.... .+
T Consensus 265 ----------~~l~~--------------~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-~~------- 310 (695)
T 2bkl_A 265 ----------RLLVK--------------GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-SW------- 310 (695)
T ss_dssp ----------EEEEE--------------CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-GC-------
T ss_pred ----------EEeec--------------CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-CC-------
Confidence 11110 1112334445 5534 555544 2588999999765320 00
Q ss_pred CccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 231 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
..+. ..+....+..++|+ ++.++++...|+..+||.+.
T Consensus 311 ---~~l~------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 311 ---KEIV------PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp ---EEEE------CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ---eEEe------cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 0000 11112247888888 67778888889988888654
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=2.9e-11 Score=137.12 Aligned_cols=66 Identities=8% Similarity=-0.128 Sum_probs=54.3
Q ss_pred CCCEEEEecCCCcEEEEEcC-cccEEEEEecC-cccEEEEeecCCCCeEE----EecCCCcEEEEcCCCCCC
Q 004739 607 RGDYIASGSDDGRWFIWEKQ-TGRLIKMLLGD-EAVVNCVQCHPFDCVVA----TSGIDNTIKIWTPSASVP 672 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~-tg~~~~~l~gH-~~~V~~v~fsp~~~~l~----S~s~D~~i~vW~~~~~~~ 672 (732)
+++++++...|+..+||.+. +|+.+..+..| ...|.+++++|++..|+ |....++|.+||+.+++.
T Consensus 329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 77899999999999999766 57777888776 77899999999998666 444567899999988763
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.36 E-value=1.3e-10 Score=116.78 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=109.8
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCC-EEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCc
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 130 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 130 (732)
..+..+ ..+.....+++|+|+ |+ +++++..++.|..|+.... ...+..+...+.+++++|++ +
T Consensus 18 ~~~~~l-~~~~~~~eg~~~d~~--g~~l~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~~~l~~~~dg-~ 81 (296)
T 3e5z_A 18 AEARRL-ADGFTWTEGPVYVPA--RSAVIFSDVRQNRTWAWSDDGQ------------LSPEMHPSHHQNGHCLNKQG-H 81 (296)
T ss_dssp CCCEEE-ECCCSSEEEEEEEGG--GTEEEEEEGGGTEEEEEETTSC------------EEEEESSCSSEEEEEECTTC-C
T ss_pred CcEEEE-ecCCccccCCeEeCC--CCEEEEEeCCCCEEEEEECCCC------------eEEEECCCCCcceeeECCCC-c
Confidence 334444 345566789999999 46 7888888999999999853 34455566789999999955 7
Q ss_pred EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEE----e--
Q 004739 131 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG----G-- 204 (732)
Q Consensus 131 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg----~-- 204 (732)
++++...++.|.+||..+++.. .+.....+ .....+..++++|+ ++++++. +
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~------------~~~~~~~~---------~~~~~~~~i~~d~~-G~l~vtd~~~g~~~ 139 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWE------------SIADSFEG---------KKLNSPNDVCLAPD-GSLWFSDPTYGIDK 139 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEE------------EEECEETT---------EECCCCCCEEECTT-SCEEEEECSHHHHC
T ss_pred EEEEecCCCeEEEEcCCCCcEE------------EEeeccCC---------CCCCCCCCEEECCC-CCEEEECCcccccc
Confidence 7777766789999998776521 11100000 01124567899998 7787773 2
Q ss_pred -----------CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEE
Q 004739 205 -----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 273 (732)
Q Consensus 205 -----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~ 273 (732)
..+.|..++.. ++ +..+ ..+.. ....++|+|+|+.|++.+.++.|+
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~--------------------~~~~~-~~~gi~~s~dg~~lv~~~~~~~i~ 196 (296)
T 3e5z_A 140 PEEGYGGEMELPGRWVFRLAPD-GT-LSAP--------------------IRDRV-KPNGLAFLPSGNLLVSDTGDNATH 196 (296)
T ss_dssp GGGSSCCCCCSSSCEEEEECTT-SC-EEEE--------------------ECCCS-SEEEEEECTTSCEEEEETTTTEEE
T ss_pred ccccccccccCCCcEEEEECCC-CC-EEEe--------------------ecCCC-CCccEEECCCCCEEEEeCCCCeEE
Confidence 13456556554 21 1111 11111 368899999999887777789999
Q ss_pred EEECCC
Q 004739 274 LMDVNH 279 (732)
Q Consensus 274 iwd~~~ 279 (732)
+|++..
T Consensus 197 ~~~~~~ 202 (296)
T 3e5z_A 197 RYCLNA 202 (296)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999863
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.34 E-value=9.2e-11 Score=119.60 Aligned_cols=182 Identities=5% Similarity=-0.061 Sum_probs=113.6
Q ss_pred CCCcEEEEeCCCCeeEEEEcc-----CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeec
Q 004739 39 DDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ 113 (732)
Q Consensus 39 ~dg~i~vWd~~~~~~~~~~~~-----~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 113 (732)
.+++|.+||..+++....+.. ........+.+..+ .++++...++.|.+||..+.+ .+..+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~---~lyv~~~~~~~v~viD~~t~~----------~~~~i~ 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDG---IGWIVVNNSHVIFAIDINTFK----------EVGRIT 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETT---EEEEEEGGGTEEEEEETTTCC----------EEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECC---EEEEEEcCCCEEEEEECcccE----------EEEEcC
Confidence 378999999999987765421 12244677887643 667777778999999998743 234443
Q ss_pred cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec
Q 004739 114 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS 193 (732)
Q Consensus 114 ~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 193 (732)
.......+++++++ .++++...++.|.+||+.+.+.. ..+..+. ..+.......+++
T Consensus 82 -~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~--------------~~i~~g~------~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 -GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEIT--------------GYIECPD------MDMESGSTEQMVQ- 138 (328)
T ss_dssp -CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEE--------------EEEECTT------CCTTTCBCCCEEE-
T ss_pred -CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEE--------------EEEEcCC------ccccCCCcceEEE-
Confidence 34678899998855 66666557899999999876521 0011000 0001112344556
Q ss_pred CCCCCEEEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecC---
Q 004739 194 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--- 269 (732)
Q Consensus 194 ~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--- 269 (732)
+++.++++.. .++.|.+||+.+.+.+..+.. +. ....++++|+|++++++..+
T Consensus 139 -~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-------------------g~---~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 139 -YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-------------------GI---QPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp -ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-------------------SS---CBCCCEECTTSEEEEEBCCBCTT
T ss_pred -ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-------------------CC---CccceEEcCCCCEEEEECCCccC
Confidence 3244444443 488999999998764433310 00 24567889999866655443
Q ss_pred -------CeEEEEECCC
Q 004739 270 -------EHVYLMDVNH 279 (732)
Q Consensus 270 -------g~v~iwd~~~ 279 (732)
+.|.++|..+
T Consensus 196 ~~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAET 212 (328)
T ss_dssp CSSCBCCCEEEEEETTT
T ss_pred CccccCCceEEEEECCC
Confidence 5677776655
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=1.2e-09 Score=118.77 Aligned_cols=215 Identities=12% Similarity=0.135 Sum_probs=142.4
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCeeEEEEccCCCcCeEEEEEe----cCCCCCEEEE
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV----PETSDELVVS 81 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~--~~~~~~~~~~~h~~~V~~~~~s----~~~~g~~l~s 81 (732)
+.+++.++.. ...+..+.|+|||++|++++.|+.|.+||+. +++.+.++.. ......++|+ |+ |+++++
T Consensus 186 t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pD--Gk~l~v 260 (567)
T 1qks_A 186 TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWE--DKYAIA 260 (567)
T ss_dssp TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCT--TTEEEE
T ss_pred CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCC--CCEEEE
Confidence 3455555543 3356789999999999999999999999996 8888888843 2346799999 68 577766
Q ss_pred EE-CCCcEEEEEcCCCCCCCCCCCCCCCceeecc----------ccC-ceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 82 GA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 82 ~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
++ .++.|.|+|..+.+ ++..+.- |.. .+..+..+++++.++++...+|.|.++|....
T Consensus 261 ~n~~~~~v~ViD~~t~~----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 261 GAYWPPQYVIMDGETLE----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp EEEETTEEEEEETTTCC----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred EEccCCeEEEEECCCCc----------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 65 46999999987642 2332221 222 57788888877777778888899999998765
Q ss_pred CCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE-EeCCCeEEEEECCCCCCCcccccCCC
Q 004739 150 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMS 228 (732)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t-g~~dg~v~iwd~~~~~~~~~~~~~~~ 228 (732)
+.. .+..+. .......+.|+|+ ++++++ ...++.|.++|+.+++.+..+...
T Consensus 331 ~~~------------~v~~i~------------~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~~~i~vg-- 383 (567)
T 1qks_A 331 NNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTG-- 383 (567)
T ss_dssp SEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECS--
T ss_pred ccc------------eeeeee------------ccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecc--
Confidence 311 111111 1124567899999 566554 446789999999987654333110
Q ss_pred CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH 279 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~--~dg~v~iwd~~~ 279 (732)
....|.+..+. + ++|++..+++.+ .++.|.++|..+
T Consensus 384 -------------g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 384 -------------GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp -------------SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred -------------CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 00112221232 2 688855554443 468999999887
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.30 E-value=1.4e-10 Score=116.40 Aligned_cols=212 Identities=9% Similarity=0.041 Sum_probs=139.2
Q ss_pred hhhccccEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 6 VRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 6 ~~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
+.....+..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+ ..+...+.+++++|+ |+++++...
T Consensus 14 ~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~ 88 (296)
T 3e5z_A 14 FPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHG 88 (296)
T ss_dssp SCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETT
T ss_pred cCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecC
Confidence 344556677777888889999999998 7888888999999999887 4555 467778999999998 577777766
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEEEeC-----------------CCcEEEEEC
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDF 146 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~-----------------dg~i~vwd~ 146 (732)
++.|.+||..++.... ......+ ....++.+++.|++ +++++.+. .+.|..++.
T Consensus 89 ~~~i~~~d~~~g~~~~-------~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 89 LRRLERQREPGGEWES-------IADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp TTEEEEECSTTCCEEE-------EECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred CCeEEEEcCCCCcEEE-------EeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECC
Confidence 7899999986543110 0001111 12356789999955 77776321 234544544
Q ss_pred CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC-CCCCCccccc
Q 004739 147 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQK 225 (732)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~ 225 (732)
. ++. . .+ .........++|+|+ ++.|++.+.++.|++||+. ++......
T Consensus 161 ~-g~~------------~-----------~~---~~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~~-- 210 (296)
T 3e5z_A 161 D-GTL------------S-----------AP---IRDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQG-- 210 (296)
T ss_dssp T-SCE------------E-----------EE---ECCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEEE--
T ss_pred C-CCE------------E-----------Ee---ecCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCCC--
Confidence 3 220 0 00 112235678999999 6777777788999999987 32210000
Q ss_pred CCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 226 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
..+ . . +.. .+.+++++++|+++++. ++.|.+|+..
T Consensus 211 --------~~~-~-----~-~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 211 --------VHF-T-----V-EPG-KTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp --------EEE-C-----C-SSS-CCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred --------eEe-e-----C-CCC-CCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 001 0 0 111 25678999999865555 8899999986
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.29 E-value=4.9e-11 Score=125.29 Aligned_cols=232 Identities=6% Similarity=-0.076 Sum_probs=139.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEE-------------------EEEecCCCCCEEEEE
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG 82 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~-------------------~~~s~~~~g~~l~s~ 82 (732)
...+.|+|||++|+.++.++.|++||+.+++..... ..+...... +.|+|+ ++.++.+
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~ 159 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA 159 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence 334889999999999999999999999988765554 333332222 345666 3444433
Q ss_pred -----ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC------CcEEEEECCCCCC
Q 004739 83 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS 151 (732)
Q Consensus 83 -----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd~~~~~~ 151 (732)
..+..|.+||+.++. ...+..+...+..+.|+|+++..|+..+.+ ..|.+||+..++.
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 356689999988642 233335677889999999433555555443 3578888765431
Q ss_pred CCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-----CeEEEEECCCCCCCcccccC
Q 004739 152 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR 226 (732)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----g~v~iwd~~~~~~~~~~~~~ 226 (732)
. .+.. ......+..+.|+|+ ++.|+.++.+ +.|++||+.+++.....
T Consensus 229 ~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--- 280 (396)
T 3c5m_A 229 R-----------------------KIKE-HAEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEEVM--- 280 (396)
T ss_dssp E-----------------------ESSC-CCTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEEEE---
T ss_pred e-----------------------Eeec-cCCCccccceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEEee---
Confidence 1 1111 111235778999999 6666655443 44999999876421100
Q ss_pred CCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEe----------------cCCeEEEEECCCCCCcceeeec
Q 004739 227 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV 289 (732)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~----------------~dg~v~iwd~~~~~~~~~~~~~ 289 (732)
. .. ... +.|+| +|++++.++ .++.|++||+.+++... +..+
T Consensus 281 -----------------~-~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~ 338 (396)
T 3c5m_A 281 -----------------V-MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKH 338 (396)
T ss_dssp -----------------E-CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEEC
T ss_pred -----------------e-CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCC
Confidence 0 00 123 89999 999888765 34789999998754322 2211
Q ss_pred CCCCceeeeccCCCCccCCCCCCccCCCccccc
Q 004739 290 GDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
...... +.+ ..........|+|||+.++
T Consensus 339 ~~~~~~--~~~---~~~~~~~~~~~s~dg~~l~ 366 (396)
T 3c5m_A 339 STSWDV--LDG---DRQITHPHPSFTPNDDGVL 366 (396)
T ss_dssp CCCCCC--BTT---BSSTTCCCCEECTTSSEEE
T ss_pred CCcccc--ccc---cccCCCCCceEccCCCeEE
Confidence 110000 000 0011244567899998877
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.28 E-value=1.7e-10 Score=131.21 Aligned_cols=210 Identities=11% Similarity=0.029 Sum_probs=132.5
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc-----
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----- 87 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg-----~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~----- 87 (732)
|...+..++|||||++||.+..++ .|++||+.+++.+.... .+ ..+..++|+|+ |+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspD--g~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHD--GKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTT--SSEEEEEECCCCSSCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeC--CCEEEEEEECCcccccc
Confidence 445688999999999999776533 89999999998776442 22 23678999999 588888887766
Q ss_pred -----------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-----CCcEEEEECCC---
Q 004739 88 -----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ--- 148 (732)
Q Consensus 88 -----------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-----dg~i~vwd~~~--- 148 (732)
|++|++.++.... ..+.....|...+..+.|+|++ ++|+..+. +..|.+||+.+
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred ccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccccc
Confidence 9999998643211 0122223355668899999966 66655543 56899999876
Q ss_pred ---CCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC----CeEEEEECCCCCCCc
Q 004739 149 ---GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLT 221 (732)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d----g~v~iwd~~~~~~~~ 221 (732)
+... ...+. . +...+.. .|+|+ +..|+..+.. +.|.+||+.+....
T Consensus 272 ~~~~~~~----------~~~l~-----------~---~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~- 324 (710)
T 2xdw_A 272 GITGILK----------WVKLI-----------D---NFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES- 324 (710)
T ss_dssp SSCSSCC----------CEEEE-----------C---SSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG-
T ss_pred ccCCccc----------eEEee-----------C---CCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc-
Confidence 3210 01111 0 1112222 47787 4555554442 36999999865310
Q ss_pred ccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCe--EEEEECCCCC
Q 004739 222 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH--VYLMDVNHAG 281 (732)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~--v~iwd~~~~~ 281 (732)
..+.+. .......+..++|++++.++++...++. |++|++.+++
T Consensus 325 ----------~~~~l~------~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 325 ----------KWKVLV------PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp ----------GCEEEE------CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred ----------cceecc------CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence 001110 1111124888999988888888888884 5666775554
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.27 E-value=9.6e-09 Score=106.11 Aligned_cols=193 Identities=12% Similarity=0.008 Sum_probs=118.7
Q ss_pred EEcCCCCEEEEEeC--CC---cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcEEE
Q 004739 26 SWNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRL 90 (732)
Q Consensus 26 ~~s~dg~~lasg~~--dg---~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i~v 90 (732)
...|+++++.+... .. +|.++|..+++.+.++..+ ..+ .+.++|+ |++++.+. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence 44578887776653 22 8899999999999888433 333 9999999 57877775 3678999
Q ss_pred EEcCCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcc
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQE 161 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~ 161 (732)
||+.+.+. +..+.- +......++|+|++ ++|+.++. ++.|.++| .+++....
T Consensus 102 iD~~t~~~----------~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~------- 162 (373)
T 2mad_H 102 FDPVTFLP----------IADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQ------- 162 (373)
T ss_pred EECCCCcE----------EEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeE-------
Confidence 99986321 222211 01235589999966 66666653 57899999 87762200
Q ss_pred cceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccc
Q 004739 162 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL 241 (732)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (732)
+ + ..+ .++.+.|++.+.+++.+.||.+.++|. +++........ .. .
T Consensus 163 ----~----------i-~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~--------~~----~ 208 (373)
T 2mad_H 163 ----L----------L-SSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG--------AM----L 208 (373)
T ss_pred ----E----------c-CCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc--------cc----c
Confidence 0 0 000 124455665567778888999999999 66543211000 00 0
Q ss_pred ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 242 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 242 ~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+... -.....+.+++..++..+..+.|.+.|+.+
T Consensus 209 --~~~~p-~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 209 --TAAQN-LLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred --cCCcc-eeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 00000 123356677666555555788899998876
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.22 E-value=1.3e-09 Score=107.67 Aligned_cols=201 Identities=6% Similarity=0.009 Sum_probs=138.8
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
+...+.+++++++|+++++.. ++.|.+||....... .+.......+.+++++|+ |.++++...++.|.+|+..+..
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT 140 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence 335788999999999777665 889999998765443 331233367899999998 5777777778899999755321
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
. ..........+.++++.|++ +++++...++.|.+||....... .
T Consensus 141 ~----------~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~--------------~---------- 185 (270)
T 1rwi_B 141 Q----------TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQV--------------V---------- 185 (270)
T ss_dssp C----------EECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEE--------------E----------
T ss_pred e----------EeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceE--------------e----------
Confidence 1 11112223467889999955 77777777789999998765311 0
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
........+.+++++++ +.++++...++.|.+||........ . . ..+.. .+.+++++
T Consensus 186 -~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~-~--------------~-----~~~~~-~p~~i~~~ 242 (270)
T 1rwi_B 186 -LPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV-L--------------P-----FTGLN-TPLAVAVD 242 (270)
T ss_dssp -CCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEE-C--------------C-----CCSCS-CEEEEEEC
T ss_pred -ecccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCccee-e--------------c-----cCCCC-CceeEEEC
Confidence 00011136788999998 6777777778899999987543211 0 0 11111 48899999
Q ss_pred CCCCEEEEEecCCeEEEEECCCC
Q 004739 258 PNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
|+|+++++...++.|++|++...
T Consensus 243 ~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 243 SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCEEEEECCCCEEEEEcCCCc
Confidence 99998788888999999998873
No 192
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.21 E-value=4.6e-10 Score=115.52 Aligned_cols=185 Identities=8% Similarity=0.028 Sum_probs=118.4
Q ss_pred CceeEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---------
Q 004739 20 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------- 85 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~d---g--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--------- 85 (732)
..+..++|||||++||.++.+ + .|.+||+.+++..... . +.. +..++|+|+ |+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence 467889999999999987653 2 4888898888766544 2 334 999999999 4777777632
Q ss_pred ------------------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-------c
Q 004739 86 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T 140 (732)
Q Consensus 86 ------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-------~ 140 (732)
..|.+||+.++.. +..+.. . .+..+.|+|++ +++++..++ .
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----------~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~ 199 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----------IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKF 199 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEE----------EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCC
T ss_pred EcccceeecCcccccCccceEEEEECCCCeE----------EeeecC-C-CcccccCCCCe--EEEEEeccccccccccc
Confidence 5688899875321 133333 3 78899999965 776665542 3
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC--------CeEEEE
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY 212 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d--------g~v~iw 212 (732)
..+|.+.+++ ...+.. + ..+..+ +|+ ++.|+.++.+ ..|.+|
T Consensus 200 ~~l~~~d~~~-----------------------~~~l~~---~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 200 WDIYIWEDGK-----------------------EEKMFE---K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp EEEEEEETTE-----------------------EEEEEE---E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccEEEeCCCc-----------------------eEEecc---C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEE
Confidence 4455443221 001110 1 234443 888 6677666643 368888
Q ss_pred ECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE-EEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 213 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
| +++.. .+. .++.. .+.. +.|+ ++ ++++++.++.++|| +.+
T Consensus 250 d--~~~~~-~l~-------------------~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 250 D--GKEVM-GIL-------------------DEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp C--SSCEE-ESS-------------------TTCCS-EEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred C--CCceE-ecc-------------------ccCCc-ccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence 8 33211 110 12222 4775 8999 88 88999999999999 874
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.20 E-value=1.7e-09 Score=106.70 Aligned_cols=233 Identities=7% Similarity=-0.063 Sum_probs=147.7
Q ss_pred ceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 21 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 21 ~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
...+++++++|++++ +...++.|.+||..+....... ..+...+.+++++++ |+++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~-- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN-- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence 778999999999777 5467889999997665433222 234456889999998 47666655 8899999987422
Q ss_pred CCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 100 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 100 ~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
...+. .....+.++++.|++ +++++...++.|.+|+..+.... .
T Consensus 99 ---------~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~-------------~------------ 143 (270)
T 1rwi_B 99 ---------QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT-------------V------------ 143 (270)
T ss_dssp ---------CEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCE-------------E------------
T ss_pred ---------EeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeE-------------e------------
Confidence 12221 223568899999955 77777777889999975443211 0
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
........+.+++++++ ++++++...++.|.+||.......... .... ..+.++++++
T Consensus 144 ~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~-~~p~~i~~d~ 201 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDI-TAPWGIAVDE 201 (270)
T ss_dssp CCCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSC-CSEEEEEECT
T ss_pred eccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEeec--------------------ccCC-CCceEEEECC
Confidence 00111124577899998 677777777889999998765321100 0111 1488999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCcceeeecCCCCceeeeccCCCCccCCCCCCccCCCccccccccccCcchhhHH
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRML 335 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l 335 (732)
+|.++++...++.|.+|+........ . + ......+..+++.++|+..+ +...++.+.+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~-~-------------~--~~~~~~p~~i~~~~~g~l~v---~~~~~~~v~~ 259 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTV-L-------------P--FTGLNTPLAVAVDSDRTVYV---ADRGNDRVVK 259 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEE-C-------------C--CCSCSCEEEEEECTTCCEEE---EEGGGTEEEE
T ss_pred CCCEEEEECCCCcEEEEcCCCCccee-e-------------c--cCCCCCceeEEECCCCCEEE---EECCCCEEEE
Confidence 99766666678899999987632111 0 0 01112355677778887555 5555555544
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.20 E-value=3.4e-08 Score=98.93 Aligned_cols=200 Identities=9% Similarity=0.039 Sum_probs=133.8
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.....+.++++.++|+++++...++.|.+||.. ++............+.++++.++ |.++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC-C
Confidence 345688999999999988887778999999988 65543222334467899999988 4777776667889999877 2
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
... ..........+.++++.+++ +++++...++.|..+|.. ++.. .+.+
T Consensus 93 ~~~---------~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-------------~~~~------- 141 (300)
T 2qc5_A 93 GFT---------EYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-------------EYDL------- 141 (300)
T ss_dssp CEE---------EEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-------------EEEC-------
T ss_pred CeE---------EecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-------------EccC-------
Confidence 210 11222234668899999854 777776667889999876 4310 0100
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
+.....+.++++.++ ++++++...++.|..||. +++.. .+. . ..... .+..+++
T Consensus 142 ----~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~~------------~------~~~~~-~~~~i~~ 195 (300)
T 2qc5_A 142 ----PNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLE-EYP------------L------PTNAA-APVGITS 195 (300)
T ss_dssp ----SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EEE------------C------SSTTC-CEEEEEE
T ss_pred ----CCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEE-Eee------------C------CCCCC-CcceEEE
Confidence 112236788999998 677666666788999998 33211 110 0 01111 4788999
Q ss_pred cCCCCEEEEEecCCeEEEEEC
Q 004739 257 SPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~ 277 (732)
+++|++.++....+.|.+|+.
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT
T ss_pred CCCCCEEEEccCCCEEEEEcC
Confidence 999986666656678888876
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.20 E-value=1e-09 Score=125.22 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=51.8
Q ss_pred CCCEEEEecCCCcEEEEEcC-cccEEEEEec-CcccEEEEeecCCCCeEE----EecCCCcEEEEcCCCCC
Q 004739 607 RGDYIASGSDDGRWFIWEKQ-TGRLIKMLLG-DEAVVNCVQCHPFDCVVA----TSGIDNTIKIWTPSASV 671 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~-tg~~~~~l~g-H~~~V~~v~fsp~~~~l~----S~s~D~~i~vW~~~~~~ 671 (732)
++.++++...|+..+||.+. +|+.++.+.. +...|..++++|+++.|+ |....++|.+||+.+++
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66788999999998888665 5777787876 477899999999998555 34456889999998876
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.17 E-value=6e-09 Score=106.08 Aligned_cols=229 Identities=10% Similarity=-0.047 Sum_probs=144.7
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC----cCeEEEEEecCCCCCEEEEEE
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~----~~V~~~~~s~~~~g~~l~s~~ 83 (732)
+++++.++. .......++++++++++++...++.|.+||+.+++....+..+.. .....+++ .+ +.++++..
T Consensus 73 t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCW 148 (328)
T ss_dssp TCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEEC
T ss_pred ccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcC
Confidence 456666664 346788999999986555554889999999999998877733321 14567777 33 34445443
Q ss_pred -CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC----------CcEEEEECCCCCCC
Q 004739 84 -GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GTLRQHDFRQGSSC 152 (732)
Q Consensus 84 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d----------g~i~vwd~~~~~~~ 152 (732)
.++.|.++|+.+... +..+.. ......++++|++ ++++++..+ +.|.++|..+++..
T Consensus 149 ~~~~~v~viD~~t~~~----------~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 149 SYQNRILKIDTETDKV----------VDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp TTCCEEEEEETTTTEE----------EEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCeE----------EEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 489999999986421 233332 3345788999955 666665544 78999998876521
Q ss_pred CCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCc
Q 004739 153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC 232 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 232 (732)
..+.+ ..+ .....++|+|+ +++|+++.. .|.+||+.+.+.....
T Consensus 217 ------------~~~~~----------~~g--~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~~--------- 260 (328)
T 3dsm_A 217 ------------KQFKF----------KLG--DWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVRP--------- 260 (328)
T ss_dssp ------------EEEEC----------CTT--CCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSSC---------
T ss_pred ------------EEEec----------CCC--CCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeeee---------
Confidence 00111 101 15689999998 567776654 8999999876532110
Q ss_pred cccccccccccCCCccccEEEEEEcCC-CCEEEEE----ecCCeEEEEECCCCCCcceeeecCCCCceeeecc
Q 004739 233 VNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLS----YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP 300 (732)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (732)
+. ... ......++++|+ +.+.++. ..++.|.+||.. ++... .+..+..+..++|..
T Consensus 261 ---~~------~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~-~i~~G~~P~~~~~~~ 321 (328)
T 3dsm_A 261 ---FL------EFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID-EFYVGIIPGAFCWKL 321 (328)
T ss_dssp ---SB------CCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE-EEEEEESEEEEEEEC
T ss_pred ---ee------cCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE-EEEeccCcceEEEec
Confidence 00 000 124788999994 5544554 468899999998 54333 333455555565544
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.16 E-value=1.8e-10 Score=117.88 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=129.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-----------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-----------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
.+++.+++++...++++|+.+ .++||++...+ ..... .+.. |+.++| + ++.|+++ .++.|
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d--~~~L~v~-~~~~l 108 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--H--GDQVLVS-TRNAL 108 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--E--TTEEEEE-ESSEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--C--CCEEEEE-cCCcE
Confidence 379999999999999999987 46779865433 11222 4566 999999 5 4888888 88999
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
++||+..... ......|...+.++.+.+. + ++++..||.|.+||+.++...
T Consensus 109 ~v~dv~sl~~----------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~---------------- 159 (388)
T 1xip_A 109 YSLDLEELSE----------FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK---------------- 159 (388)
T ss_dssp EEEESSSTTC----------EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE----------------
T ss_pred EEEEchhhhc----------cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc----------------
Confidence 9999986431 3345566777888887652 3 888899999999999876521
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCC--CcccccCCCCCCcccccccccccc-CC
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSE-HG 245 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~ 245 (732)
. ....|++++|+|+ | ++.|..||++++|+....+. ...+. .|..+.+ .+
T Consensus 160 -------~------~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~------------~Pp~~~~~~~ 211 (388)
T 1xip_A 160 -------Q------LAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFS------------LPSELEELPV 211 (388)
T ss_dssp -------E------EEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEEC------------CCHHHHTSCT
T ss_pred -------c------ccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceec------------CCcccccccC
Confidence 0 2237999999998 5 78899999999998876542 21221 0111110 12
Q ss_pred CccccEEEEEEcCCCCEEEEEec
Q 004739 246 RSSLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 246 ~~~~~i~~l~~sp~g~~l~~~~~ 268 (732)
|. ..|.++.|.+++.+|++=..
T Consensus 212 ~~-~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 212 EE-YSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp TT-SEEEEEEESSSSEEEEEEEC
T ss_pred CC-eeEEEEEEecCCeEEEEEcC
Confidence 33 36999999999998876433
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.13 E-value=1.5e-08 Score=104.74 Aligned_cols=235 Identities=11% Similarity=0.045 Sum_probs=144.6
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEEe
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKFV 71 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~s 71 (732)
+++++.++..-..+ .++|+|||++|+.+. .++.|.+||..+.+.+.++..+ +......+.|+
T Consensus 56 t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence 44555555543344 899999999988875 3678999999999888877332 01234589999
Q ss_pred cCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCcee-eccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 72 PETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 72 ~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
|+ |++|+.+.. ++.|.++| .+.+. +.. +. ... ++.+.|++.+.+++.+.||.+.++|. +
T Consensus 134 pD--G~~l~v~n~~~~~~v~viD-~t~~~----------~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 134 PN--NADLLFFQFAAGPAVGLVV-QGGSS----------DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred CC--CCEEEEEecCCCCeEEEEE-CCCCE----------EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 99 588887764 57899999 76421 223 22 111 24556766677788888999999998 6
Q ss_pred CCCCCCCC-----CCCc-----------c---------cceEEeeccCCccccccCC---C-------CCccceEEEEec
Q 004739 149 GSSCPPAG-----SSHQ-----------E---------CRNILLDLRCGAKRSLADP---P-------KQTLSLKSCDIS 193 (732)
Q Consensus 149 ~~~~~~~~-----~~~~-----------~---------~~~~~~~~~~~~~~~~~~~---~-------~~~~~v~~i~~~ 193 (732)
++...... .... . ....++++..+....+... . -.......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 54331100 0000 0 0111122211110000000 0 001123347789
Q ss_pred CCCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-E
Q 004739 194 STRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-E 262 (732)
Q Consensus 194 ~~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~ 262 (732)
|+ ++.++++.. ++.|.++|+.+.+.+..+. .+. ...+++|+|||+ +
T Consensus 276 ~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-------------------~g~---~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 276 KS-SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-------------------LGH---DVDAISVAQDGGPD 332 (373)
T ss_pred CC-CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-------------------CCC---CcCeEEECCCCCeE
Confidence 98 455555432 3579999999887655442 111 367899999999 7
Q ss_pred EEEEe-cCCeEEEEECCCCCCcce
Q 004739 263 VLLSY-SGEHVYLMDVNHAGGRAM 285 (732)
Q Consensus 263 l~~~~-~dg~v~iwd~~~~~~~~~ 285 (732)
++++. .++.|.+||+.+.+....
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEee
Confidence 88877 489999999999765443
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.12 E-value=2.7e-09 Score=105.32 Aligned_cols=192 Identities=8% Similarity=0.033 Sum_probs=135.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC-cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~-~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
.+++|++++.|+.|.+||.++++.+.++ ..+. ..+.++.++|+ |++|+ +.++.|..||. ++ +.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G----------~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG----------RE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS----------CE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC----------CE
Confidence 4578999999999999999999999999 4554 57899999998 58888 45788999998 43 22
Q ss_pred ceeeccc-cCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccc
Q 004739 109 SALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS 186 (732)
Q Consensus 109 ~~~~~~h-~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (732)
+..+..+ ...+.++.+.|++ +++++.+. ++.|..+|. +++. ++....... ...+...
T Consensus 68 ~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~--------------l~~~~~~~~-----~~~~~~~ 126 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEV--------------LSKTEFETG-----IERPHAQ 126 (276)
T ss_dssp EEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCE--------------EEEEEECCS-----CSSGGGS
T ss_pred EEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCE--------------EEEEeccCC-----CCccccc
Confidence 5555543 3468889999955 78877776 677777775 4431 121110000 0011112
Q ss_pred eEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEE
Q 004739 187 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS 266 (732)
Q Consensus 187 v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~ 266 (732)
...+.+.++ ++++++...++.|..||.. ++.+.++.. . . .+.++.+.++|++++++
T Consensus 127 ~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--------------------~-~-~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 127 FRQINKNKK-GNYLVPLFATSEVREIAPN-GQLLNSVKL--------------------S-G-TPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp CSCCEECTT-SCEEEEETTTTEEEEECTT-SCEEEEEEC--------------------S-S-CCCEEEECTTSCEEEEC
T ss_pred ccCceECCC-CCEEEEecCCCEEEEECCC-CCEEEEEEC--------------------C-C-CccceeEcCCCCEEEEe
Confidence 334567787 7899999999999999998 765544321 1 1 24557788999999988
Q ss_pred ecCCeEEEEECCCCCC
Q 004739 267 YSGEHVYLMDVNHAGG 282 (732)
Q Consensus 267 ~~dg~v~iwd~~~~~~ 282 (732)
+.++.|..+|..+++.
T Consensus 183 ~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 183 GDAHCFVQLNLESNRI 198 (276)
T ss_dssp BTTSEEEEECTTTCCE
T ss_pred CCCCeEEEEeCcCCcE
Confidence 8888999999998654
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=1.3e-08 Score=100.33 Aligned_cols=212 Identities=11% Similarity=0.127 Sum_probs=145.6
Q ss_pred hccccEeeeccC-CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-C
Q 004739 8 RLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-D 85 (732)
Q Consensus 8 ~~~~~~~l~~h~-~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-d 85 (732)
+.+.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+.++..+....+.++.+.|+ |+++++.+. +
T Consensus 24 tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d--G~~lv~~~~~~ 98 (276)
T 3no2_A 24 TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD--GNALVAWCGHP 98 (276)
T ss_dssp TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT--SCEEEEEESTT
T ss_pred CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC--CCEEEEecCCC
Confidence 566777777766 5789999999999888 35778999998 899999884333457889999999 588988877 7
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCC
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
+.|..+|.. ++. +..+. .+......+++.++ ++++++...++.|..||.. ++
T Consensus 99 ~~v~~vd~~---Gk~--------l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G~--------- 156 (276)
T 3no2_A 99 STILEVNMK---GEV--------LSKTEFETGIERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPN-GQ--------- 156 (276)
T ss_dssp EEEEEECTT---SCE--------EEEEEECCSCSSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTT-SC---------
T ss_pred CEEEEEeCC---CCE--------EEEEeccCCCCcccccccCceECCC-CCEEEEecCCCEEEEECCC-CC---------
Confidence 777777653 221 22221 12234455677884 4899999999999999987 65
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM 239 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (732)
.+|....+ ....++.+.++ ++.++++..++.|..+|..+++.+-++....
T Consensus 157 -----~~w~~~~~------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~------------ 206 (276)
T 3no2_A 157 -----LLNSVKLS------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNAND------------ 206 (276)
T ss_dssp -----EEEEEECS------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGG------------
T ss_pred -----EEEEEECC------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCC------------
Confidence 23433221 13345677787 7889888888899999999887665542110
Q ss_pred ccccCCCccccEEEEEEcCCCCEEEEEecC--------CeEEEEECCC
Q 004739 240 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNH 279 (732)
Q Consensus 240 ~~~~~~~~~~~i~~l~~sp~g~~l~~~~~d--------g~v~iwd~~~ 279 (732)
. .+..-..+..++..++|..+++.... +..+++++..
T Consensus 207 -~--~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 207 -I--EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp -S--BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred -C--CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECC
Confidence 0 00111137889999999988777421 2445666643
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.10 E-value=3.9e-08 Score=100.13 Aligned_cols=194 Identities=11% Similarity=0.054 Sum_probs=120.6
Q ss_pred EEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcE
Q 004739 24 AISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEV 88 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~-----dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i 88 (732)
.....|+++.+.+... ++.|.+.|..+++.+.++..+. .+ . +.++|+ |++++.++ .++.|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~-~P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LP-N-PVVADD--GSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SC-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC-CC-c-EEECCC--CCEEEEEcccccccccCCCCCEE
Confidence 3455789998887765 6799999999999999994443 33 4 999999 47666654 36789
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccc-------cCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~ 159 (732)
.+||..+... +..+.-- ......++|+|++ ++++.+.. ++.|.++|+.+.+..
T Consensus 112 sviD~~t~~v----------~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv------- 173 (386)
T 3sjl_D 112 EVFDPVTLLP----------TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFK------- 173 (386)
T ss_dssp EEECTTTCCE----------EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEE-------
T ss_pred EEEECCCCeE----------EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEE-------
Confidence 9999987431 3333210 1245679999976 65555543 689999999988622
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC-CCCCcccccCCCCCCccccccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCP 238 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 238 (732)
- .+. .++ +....|.+.+.+++.+.||.+.+.++.. ++...... ..+.
T Consensus 174 -------~--------tI~-v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~---------~~~~- 221 (386)
T 3sjl_D 174 -------R--------MLD-VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT---------EVFH- 221 (386)
T ss_dssp -------E--------EEE-CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC---------CCCS-
T ss_pred -------E--------EEE-CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec---------ceec-
Confidence 0 000 000 0112244456777888899998898876 33211000 0000
Q ss_pred cccccCCCccccE-EEEEEc-CCCCEEEEEecCCeEEEEECCCC
Q 004739 239 MHLSEHGRSSLHL-THVTFS-PNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 239 ~~~~~~~~~~~~i-~~l~~s-p~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
... . ++ ....|. ++|++++ .+.+|.|++.|+.+.
T Consensus 222 -----~~~-~-~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 222 -----PED-E-FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp -----CTT-S-CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred -----ccc-c-cccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 000 0 11 123564 6786555 666899999998773
No 202
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.09 E-value=8.9e-09 Score=105.58 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=79.7
Q ss_pred CceeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeeEEEEc------cCCCcCeEEEEEecCCCCCEEEEEEC-----CC
Q 004739 20 GCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIE------TGHSANVFCTKFVPETSDELVVSGAG-----DA 86 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~--~dg~i~vWd~~~~~~~~~~~------~~h~~~V~~~~~s~~~~g~~l~s~~~-----dg 86 (732)
.....++++|+|+++++.. .++.++||.+.+++.. .+. ..|-..+.+++++++ |+++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCcCCCC
Confidence 7889999999999988864 2343666665555433 221 134567999999998 465555433 57
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCceeec------cccCceeEEEEecCCCcEEEEEe---CCCcEEEEECCCCC
Q 004739 87 EVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGS 150 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~s~s---~dg~i~vwd~~~~~ 150 (732)
.|.+||+.++.. +..+. .+...+..+++.|+++..+++-. .++.|.+||+.+++
T Consensus 94 ~i~~~d~~tg~~----------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 94 KLVAWDTLNNQL----------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEEEEETTTTEE----------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred eEEEEECCCCeE----------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 899999986431 12221 12345689999986656666665 67899999998765
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.05 E-value=2.2e-08 Score=104.91 Aligned_cols=219 Identities=9% Similarity=0.016 Sum_probs=136.1
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS 97 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~ 97 (732)
.....|+|+++++++++...++.|++||..+++..... .... ... ++|+|+ ++.|+.+..++ .|.+|+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~~-~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGFK-GGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETCC-BCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccCC-CCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence 46779999999998888877899999999888776555 3322 233 999999 47888887766 78888876421
Q ss_pred CCCCCCCCCCCceee----ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 98 GRGLDDNAITPSALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
. ...+ ......+.+++++|+++.+++ +..++.|+.||..++... .+.....
T Consensus 206 ~----------~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~------------~~~~~~~-- 260 (409)
T 3hrp_A 206 A----------PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT------------LIKQLEL-- 260 (409)
T ss_dssp C----------EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE------------EEEECCC--
T ss_pred e----------eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE------------EEecccc--
Confidence 1 1122 214466788999996545554 667889999998765411 1100000
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
.......+...++|+|+++.++++-..++.|+.|+.... +..+....... .+... ......-. ....
T Consensus 261 -----~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~----g~~dg-~~~~~~~~-~P~g 327 (409)
T 3hrp_A 261 -----SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK----TVQDG-LREEALFA-QPNG 327 (409)
T ss_dssp -----CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC----SCBCE-EGGGCBCS-SEEE
T ss_pred -----cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC----CcCCC-cccccEeC-CCeE
Confidence 000000011289999965777777777899999997643 11110000000 00000 00000011 3789
Q ss_pred EEEcCCCCEEEEEe-cCCeEEEEECCCCC
Q 004739 254 VTFSPNGEEVLLSY-SGEHVYLMDVNHAG 281 (732)
Q Consensus 254 l~~sp~g~~l~~~~-~dg~v~iwd~~~~~ 281 (732)
++++|+|+++++-+ .++.|+.|++.++.
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 99999999777777 78999999987643
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.05 E-value=2.9e-08 Score=103.05 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=117.3
Q ss_pred CCCCEEEEEeC-C----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE----------CCCcEEEEEc
Q 004739 29 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL 93 (732)
Q Consensus 29 ~dg~~lasg~~-d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~----------~dg~i~vwd~ 93 (732)
++++++.+... + +.|.++|..+++.+.++..+. .+ .+.++|++ ++++.+. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDg--k~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDG--SFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTS--SCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCC--CEEEEEeccccccccCCCCCEEEEEEC
Confidence 46776665544 2 699999999999999995443 34 89999994 6666654 4678999999
Q ss_pred CCCCCCCCCCCCCCCceeecc-------ccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 94 SRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
.+.+. +..+.- .......+.|+|++ ++++.+.. ++.|.+.|+.+.+..
T Consensus 157 ~t~~v----------v~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv------------ 213 (426)
T 3c75_H 157 VTFLP----------IADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFD------------ 213 (426)
T ss_dssp TTCCE----------EEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEE------------
T ss_pred CCCcE----------EEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEE------------
Confidence 87432 233221 11235578999966 66666553 578999999987622
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
-. +.. .+ +....|++...+++.+.||.+.+.+..+.+...... ..+. .
T Consensus 214 --~~--------I~v-~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---------~~~~------v 261 (426)
T 3c75_H 214 --RM--------LDV-PD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---------EVFH------T 261 (426)
T ss_dssp --EE--------EEC-CS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---------CCCS------C
T ss_pred --EE--------EEc-CC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---------eeec------c
Confidence 00 000 00 022334434566677778888777774443221100 0000 0
Q ss_pred CCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
+... -...+.|.+++..++..+..+.|.+.|+..
T Consensus 262 ~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~ 295 (426)
T 3c75_H 262 EDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTA 295 (426)
T ss_dssp TTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred CCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence 0000 012357899998888888889999999876
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.01 E-value=2.5e-08 Score=100.81 Aligned_cols=205 Identities=11% Similarity=0.129 Sum_probs=131.5
Q ss_pred cCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEE-Ecc--C-CCcCeEEEEEecCCCCCEEEEEECC-------
Q 004739 18 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHS-IET--G-HSANVFCTKFVPETSDELVVSGAGD------- 85 (732)
Q Consensus 18 h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~-~~~--~-h~~~V~~~~~s~~~~g~~l~s~~~d------- 85 (732)
+...+.+++++++ |+++++.. .+.|.+||.. ++.... ... . ....+.+++++++ |+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccc
Confidence 5577899999999 77666554 4479999988 665433 211 1 1245889999998 5777776554
Q ss_pred --------CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEe----cCCCcEEEEEeCCCcEEEEECC-CCCCC
Q 004739 86 --------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFR-QGSSC 152 (732)
Q Consensus 86 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l~s~s~dg~i~vwd~~-~~~~~ 152 (732)
+.|..|+.. +. ...+..+......++++ |++..++++...++.|.+||+. .++.
T Consensus 145 ~~~~~~~~~~l~~~~~~---g~---------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~- 211 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD---GQ---------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI- 211 (314)
T ss_dssp CBTTSSSCEEEEEECTT---SC---------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-
T ss_pred cccccCCCCeEEEECCC---CC---------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-
Confidence 456666544 11 22223344557889999 8653445555677899999976 2210
Q ss_pred CCCCCCCcccceEEeeccCCccccccCCCCCc-cceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCC
Q 004739 153 PPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP 231 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 231 (732)
.....+.. ...+. ..+..++++++ ++++++...++.|.+||..+++.+..+.
T Consensus 212 --------~~~~~~~~-----------~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~------- 264 (314)
T 1pjx_A 212 --------ENKKVWGH-----------IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR------- 264 (314)
T ss_dssp --------EEEEEEEE-----------CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE-------
T ss_pred --------ccceEEEE-----------CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEe-------
Confidence 00001111 11122 35678999998 7788887788999999988654433221
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA 280 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~~ 280 (732)
.+.. .+.+++|+|+|+.|++++ .++.|..|++...
T Consensus 265 -------------~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 265 -------------CPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp -------------CSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred -------------CCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 1112 489999999999666554 4689999998763
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.01 E-value=4.2e-08 Score=99.11 Aligned_cols=212 Identities=8% Similarity=0.050 Sum_probs=130.3
Q ss_pred eeccCCceeEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCeeEEEEc---cCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 15 LEGHQGCVNAISWNSKGSLLIS-------GSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 15 l~~h~~~V~~l~~s~dg~~las-------g~~dg~i~vWd~~~~~~~~~~~---~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
+...-....+++|+++|+++++ +..++.|.+||..+++...... .++...+.++.++++. |.+++ ++.
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-g~l~v-~~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFV-ADM 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEE-EET
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC-CcEEE-EEC
Confidence 3444566789999999998887 5678899999988887653321 1255678999999982 24444 444
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCc-ee-ec-cccCceeEEEEecCCCcEEEEEeCC---------------CcEEEEEC
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPS-AL-YQ-CHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHDF 146 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~-~~-~~-~h~~~v~~l~~~p~~~~~l~s~s~d---------------g~i~vwd~ 146 (732)
.+.|.+||.. +.... + .. .. .....+.++++.+++ +++++...+ +.|..||.
T Consensus 91 ~~~l~~~d~~-g~~~~--------~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEE--------IAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp TTEEEEEETT-SCEEE--------CCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CCCEEEEeCC-CCEEE--------EEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECC
Confidence 5578899987 32110 0 00 01 112458899999955 777666554 45666665
Q ss_pred CCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEec----CCCCCE-EEEEeCCCeEEEEECC-CCCCC
Q 004739 147 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHL-LLVGGSDAFARLYDRR-MLPPL 220 (732)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~-l~tg~~dg~v~iwd~~-~~~~~ 220 (732)
. ++. ..+. ........++++ |+ ++. +++...++.|.+||+. +++ +
T Consensus 161 ~-g~~------------~~~~--------------~~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~-~ 211 (314)
T 1pjx_A 161 D-GQM------------IQVD--------------TAFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAK-I 211 (314)
T ss_dssp T-SCE------------EEEE--------------EEESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTE-E
T ss_pred C-CCE------------EEec--------------cCCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCc-c
Confidence 3 220 0000 011245778899 98 544 4555568899999976 221 1
Q ss_pred cccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
... .....+ .++....+..++++++|+++++...++.|.+||..+++
T Consensus 212 ~~~-------~~~~~~-------~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 212 ENK-------KVWGHI-------PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEE-------EEEEEC-------CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS
T ss_pred ccc-------eEEEEC-------CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc
Confidence 000 000000 11110137889999999988877788999999988644
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.99 E-value=5.2e-08 Score=99.19 Aligned_cols=238 Identities=11% Similarity=0.090 Sum_probs=143.9
Q ss_pred hccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccCC------CcCeEEEEEe
Q 004739 8 RLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------SANVFCTKFV 71 (732)
Q Consensus 8 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~h------~~~V~~~~~s 71 (732)
+++.+.++..-..+ .++++|||++|+++. .++.|.+||..+++.+.++..+. ......+.|+
T Consensus 68 t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 45666666654555 499999999887765 36789999999999988874332 1245679999
Q ss_pred cCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC-
Q 004739 72 PETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ- 148 (732)
Q Consensus 72 ~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~- 148 (732)
|+ |++++.+.. ++.|.++|+.+.+. +..+.- .+ +....|.+.+.+++.+.||.+.+.++.+
T Consensus 146 pD--Gk~lyVan~~~~~~VsVID~~t~~v----------v~tI~v-~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~ 209 (386)
T 3sjl_D 146 PD--GKTLLFYQFSPAPAVGVVDLEGKAF----------KRMLDV-PD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTE 209 (386)
T ss_dssp TT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred CC--CCEEEEEEcCCCCeEEEEECCCCcE----------EEEEEC-CC---cceeecCCCceeEEECCCCCEEEEECCCC
Confidence 99 588877764 68999999997421 333321 11 1122354556777888888888888866
Q ss_pred CCCCC---CCC-C------CCc----ccceEEeeccCCccccccCCCC--------------------CccceEEEEecC
Q 004739 149 GSSCP---PAG-S------SHQ----ECRNILLDLRCGAKRSLADPPK--------------------QTLSLKSCDISS 194 (732)
Q Consensus 149 ~~~~~---~~~-~------~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~v~~i~~~~ 194 (732)
++... ..+ . .+. ..-..+|....+....+..... .......+++++
T Consensus 210 g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 210 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred CeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 33210 000 0 000 0011222222221111110000 011222467788
Q ss_pred CCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE
Q 004739 195 TRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV 263 (732)
Q Consensus 195 ~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l 263 (732)
+ ++.+++... .+.|.++|+.+.+.+..+.. +..+++|+++||++ +|
T Consensus 290 ~-~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~lavs~D~~~~l 346 (386)
T 3sjl_D 290 A-LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDSINVSQDEKPLL 346 (386)
T ss_dssp T-TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECSSSSCEE
T ss_pred C-CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCeEE
Confidence 7 455555432 25799999999876655421 11478999999997 77
Q ss_pred EEEec-CCeEEEEECCCCCCccee
Q 004739 264 LLSYS-GEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 264 ~~~~~-dg~v~iwd~~~~~~~~~~ 286 (732)
+++.. ++.|.++|..+++....+
T Consensus 347 y~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEe
Confidence 77654 899999999997644433
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.94 E-value=6.9e-08 Score=100.21 Aligned_cols=238 Identities=11% Similarity=0.066 Sum_probs=143.8
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKF 70 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~ 70 (732)
.+++.+.++.--..+ .++++|||++|+++. .++.|.++|..+++.+.++..+ .......+.|
T Consensus 107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence 355666666654556 899999999888775 3678999999999998887432 1234567899
Q ss_pred ecCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 004739 71 VPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 148 (732)
Q Consensus 71 s~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~ 148 (732)
+|+ |++++.+.. ++.|.+.|+.+.+. +..+.- .. +....|++.+.+++.+.||.+.+.++.+
T Consensus 185 spD--Gk~lyV~n~~~~~~VsVID~~t~kv----------v~~I~v-~g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 185 TPD--NKNLLFYQFSPAPAVGVVDLEGKTF----------DRMLDV-PD---CYHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CTT--SSEEEEEECSSSCEEEEEETTTTEE----------EEEEEC-CS---EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred cCC--CCEEEEEecCCCCeEEEEECCCCeE----------EEEEEc-CC---ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 999 588888764 57899999987421 233321 11 1233444446666777777777777744
Q ss_pred CCCCC----CCCC--------C--Ccccc----------eEEeeccCCccccccC---C--CC-----CccceEEEEecC
Q 004739 149 GSSCP----PAGS--------S--HQECR----------NILLDLRCGAKRSLAD---P--PK-----QTLSLKSCDISS 194 (732)
Q Consensus 149 ~~~~~----~~~~--------~--~~~~~----------~~~~~~~~~~~~~~~~---~--~~-----~~~~v~~i~~~~ 194 (732)
++... .... . ..... ..+++...+....+.. . .. .......++++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 33210 0000 0 00011 1222222111100000 0 00 001112368899
Q ss_pred CCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC-EE
Q 004739 195 TRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV 263 (732)
Q Consensus 195 ~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l 263 (732)
++ .++++... ++.|.++|+.+.+.+..+.. +.....++|+|+|+ ++
T Consensus 329 dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------------------g~~P~gia~spDg~~~l 385 (426)
T 3c75_H 329 QS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------------------GHEIDSINVSQDAEPLL 385 (426)
T ss_dssp GG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECCSSSCEE
T ss_pred CC-CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------------------CCCcCeEEEccCCCEEE
Confidence 84 45554431 35799999999877655421 11377899999999 88
Q ss_pred EEEe-cCCeEEEEECCCCCCcce
Q 004739 264 LLSY-SGEHVYLMDVNHAGGRAM 285 (732)
Q Consensus 264 ~~~~-~dg~v~iwd~~~~~~~~~ 285 (732)
+++. .++.|.++|+.+.+....
T Consensus 386 yv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEcCCCCeEEEEECCCCCEEEE
Confidence 8888 489999999999765443
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.94 E-value=1e-07 Score=95.38 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=127.2
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc--C-CCcCeEEEEEecCCCCCEEEEEECC---------
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--G-HSANVFCTKFVPETSDELVVSGAGD--------- 85 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~--~-h~~~V~~~~~s~~~~g~~l~s~~~d--------- 85 (732)
+...+.+++++++|+++++. ++.|.+||..+++....... . ....+++++++|+ |+++++....
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCT
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccC
Confidence 45789999999999966554 56799999988765433211 1 2345889999998 5766655332
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCCCCCCCCCCcccc
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECR 163 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~ 163 (732)
..-.||.+... +. +..+..+....+.++|+|++..++++.+.++.|.+||+. ++.. ...
T Consensus 128 ~~~~l~~~d~~-g~---------~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~---------~~~ 188 (297)
T 3g4e_A 128 HQGALYSLFPD-HH---------VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI---------SNR 188 (297)
T ss_dssp TCEEEEEECTT-SC---------EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE---------EEE
T ss_pred CCcEEEEEECC-CC---------EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc---------cCc
Confidence 33466666532 11 222333445678999999775566677778899999974 3321 001
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
..+..+ .........++++++ +++.++...++.|.+||..+++.+..+.
T Consensus 189 ~~~~~~-----------~~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d~~tG~~~~~i~------------------- 237 (297)
T 3g4e_A 189 RSVYKL-----------EKEEQIPDGMCIDAE-GKLWVACYNGGRVIRLDPVTGKRLQTVK------------------- 237 (297)
T ss_dssp EEEEEC-----------CGGGCEEEEEEEBTT-SCEEEEEETTTEEEEECTTTCCEEEEEE-------------------
T ss_pred EEEEEC-----------CCCCCCCCeeEECCC-CCEEEEEcCCCEEEEEcCCCceEEEEEE-------------------
Confidence 111111 112235678999998 7788888788899999998776554331
Q ss_pred CCCccccEEEEEEc-CCCCEEEEEecC
Q 004739 244 HGRSSLHLTHVTFS-PNGEEVLLSYSG 269 (732)
Q Consensus 244 ~~~~~~~i~~l~~s-p~g~~l~~~~~d 269 (732)
.+.. .+++++|. |+++.|++++..
T Consensus 238 -~p~~-~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 238 -LPVD-KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp -CSSS-BEEEEEEESGGGCEEEEEEBC
T ss_pred -CCCC-CceEEEEeCCCCCEEEEEcCC
Confidence 1111 48999998 898888777653
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.93 E-value=1.5e-07 Score=94.27 Aligned_cols=215 Identities=12% Similarity=0.079 Sum_probs=129.6
Q ss_pred cEeeeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE
Q 004739 12 ERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL 90 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v 90 (732)
...+..+..---+..|+|+ +.++++...++.|..||..+++.. .+ .....+.+++++|+ |+++++ . ++.|.+
T Consensus 5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVAT-I-GTKFCA 77 (297)
T ss_dssp EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEE-E-TTEEEE
T ss_pred EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEE-E-CCeEEE
Confidence 3345555556678999995 456667777899999999887653 33 24567999999998 465554 4 567999
Q ss_pred EEcCCCCCCCCCCCCCCCceeec-c-ccCceeEEEEecCCCcEEEEEeCC---------CcEEEEECCCCCCCCCCCCCC
Q 004739 91 FNLSRFSGRGLDDNAITPSALYQ-C-HTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSH 159 (732)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~ 159 (732)
||..++.... +.... . ....++.+++.|++ +++++...+ ..-.+|.+......
T Consensus 78 ~d~~~g~~~~--------~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~------- 141 (297)
T 3g4e_A 78 LNWKEQSAVV--------LATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHV------- 141 (297)
T ss_dssp EETTTTEEEE--------EEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-------
T ss_pred EECCCCcEEE--------EEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCE-------
Confidence 9987532111 11111 0 12457899999965 666544221 23345554322110
Q ss_pred cccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECC--CCCCCcccccCCCCCCcccccc
Q 004739 160 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
..+. ........++|+|++..++++.+.++.|.+||+. ++.. ... +.+..+
T Consensus 142 ----~~~~--------------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~-------~~~~~~- 194 (297)
T 3g4e_A 142 ----KKYF--------------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-SNR-------RSVYKL- 194 (297)
T ss_dssp ----EEEE--------------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-EEE-------EEEEEC-
T ss_pred ----EEEe--------------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-cCc-------EEEEEC-
Confidence 0000 0112457899999943344666668899999974 3321 000 000000
Q ss_pred ccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCc
Q 004739 238 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
... ...+..++++++|++.++....+.|.+||..+++..
T Consensus 195 ------~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 195 ------EKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp ------CGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred ------CCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 011 114788999999987777777889999999876543
No 211
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.93 E-value=2.1e-08 Score=114.43 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=121.4
Q ss_pred cCCceeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc-----
Q 004739 18 HQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----- 87 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~----- 87 (732)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCcccccc
Confidence 44478899999999999987643 46999999999876542 22223467899998 45666655543
Q ss_pred ---------EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCC
Q 004739 88 ---------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCP 153 (732)
Q Consensus 88 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~ 153 (732)
|++|++.+..... ..+.....+...+..+.|+|++ ++|+..+.+ ..|.+||+.++...
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~- 307 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG- 307 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC-
T ss_pred cccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc-
Confidence 8899987643211 1122223334458899999966 666655543 37999998765200
Q ss_pred CCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC----CCeEEEEECCCCC-CCcccccCCC
Q 004739 154 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----DAFARLYDRRMLP-PLTSCQKRMS 228 (732)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~----dg~v~iwd~~~~~-~~~~~~~~~~ 228 (732)
+...+. . +...+... ++|+ +..|+..+. ++.|.+||+.+.. ....+
T Consensus 308 --------~~~~l~-----------~---~~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l----- 358 (741)
T 1yr2_A 308 --------PVTALI-----------P---DLKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV----- 358 (741)
T ss_dssp --------CCEEEE-----------C---SSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-----
T ss_pred --------ccEEec-----------C---CCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCccccEEE-----
Confidence 000111 0 01122222 2366 566766665 3459999987642 11111
Q ss_pred CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
. ..+.. .+..+.++ ++.++++...|+..+||.+.
T Consensus 359 --------~------~~~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 359 --------V------PESKD-NLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp --------E------CCCSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred --------e------cCCCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 0 11222 36778887 56677788889887777654
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.92 E-value=1.8e-08 Score=113.89 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=125.9
Q ss_pred ccCCceeEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc----
Q 004739 17 GHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---- 87 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg-----~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~---- 87 (732)
+|...+..++|||||++||-+ +.+..|+|||+.+++.+.... +......++|+ + |+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-D--g~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-G--NEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-T--TTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-C--CCEEEEEEecCccccc
Confidence 456678899999999998843 333679999999998665321 11113578899 8 478888877743
Q ss_pred ---------EEEEEcCCCCCCCCCCCCCCCceeecc-ccCceeEEEEecCCCcEEEEEeC---CCcEEEEECCCCCCCCC
Q 004739 88 ---------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASE---DGTLRQHDFRQGSSCPP 154 (732)
Q Consensus 88 ---------i~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~s~s~---dg~i~vwd~~~~~~~~~ 154 (732)
|++|++.+..... ..+..... |...+.++.|+|++..++++.+. ++.|.++|+.++...
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-- 272 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-- 272 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC--
T ss_pred ccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc--
Confidence 9999988654321 11333333 45567889999977445455543 247999998776411
Q ss_pred CCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC---CeEEEEECCCCCCCcccccCCCCCC
Q 004739 155 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPP 231 (732)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~ 231 (732)
... +.. +....... ++++++.+++....+ +.|..+|+.+.... .
T Consensus 273 --------~~~-----------l~~---~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~--------- 319 (693)
T 3iuj_A 273 --------LLT-----------VQG---DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-H--------- 319 (693)
T ss_dssp --------CEE-----------EEC---SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-G---------
T ss_pred --------eEE-----------EeC---CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-c---------
Confidence 001 111 11122222 556645555555443 67999999875320 0
Q ss_pred ccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC---eEEEEECCCC
Q 004739 232 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHA 280 (732)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg---~v~iwd~~~~ 280 (732)
++.+ ..+... +. .|++++++|+....++ .|++|++...
T Consensus 320 -~~~l-------~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 320 -WRDL-------IPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp -CEEE-------ECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred -cEEE-------ecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 0111 112221 33 8899999888776643 6889988753
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.91 E-value=2.4e-07 Score=97.06 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=96.9
Q ss_pred cCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--c
Q 004739 63 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--T 140 (732)
Q Consensus 63 ~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~ 140 (732)
.....++|+++ |+++++...++.|++||+.+.. +..+........ ++|+|++ +.|+++..++ .
T Consensus 131 ~~P~~la~d~~--g~lyv~d~~~~~I~~id~~~g~-----------~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 131 KYMWGIAAVGN--NTVLAYQRDDPRVRLISVDDNK-----------VTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHT 195 (409)
T ss_dssp CCEEEEEECST--TEEEEEETTTTEEEEEETTTTE-----------EEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCE
T ss_pred CCceEEEEeCC--CCEEEEecCCCcEEEEECCCCE-----------EEEeeccCCCCc-eeEecCC-CcEEEEecCCCce
Confidence 45789999988 4777776777999999998532 222222233334 8999965 6776777655 7
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL 220 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~ 220 (732)
|.+++....... ..+-.+ .......+.+++++|+++. |+++..++.|+.||..+...
T Consensus 196 I~~~d~~~~~~~-----------~~~g~~----------~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~- 252 (409)
T 3hrp_A 196 VYVYMKASGWAP-----------TRIGQL----------GSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEV- 252 (409)
T ss_dssp EEEEEGGGTTCE-----------EEEEEC----------CTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCE-
T ss_pred EEEEEcCCCcee-----------EEeeec----------cchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCE-
Confidence 888887654310 000000 0001235678899996454 54567788999999986531
Q ss_pred cccccCCCCCCccccccccccccCCCccc-cEEEEEEcCC-CCEEEEEecCCeEEEEECCC
Q 004739 221 TSCQKRMSPPPCVNYFCPMHLSEHGRSSL-HLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~sp~-g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+.. ... .+.... +...++|+|+ +.++++-..++.|+.|+...
T Consensus 253 ~~~~~-------------~~~--~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 253 TLIKQ-------------LEL--SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp EEEEE-------------CCC--CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred EEEec-------------ccc--cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 11100 000 111111 1238999996 44444445578899887654
No 214
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.90 E-value=3.5e-07 Score=91.34 Aligned_cols=200 Identities=7% Similarity=0.002 Sum_probs=135.2
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
+...+.+++++++|+++++...++.|..||.. ++............+.++++.++ |.++++...++.|.+||.. +.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~~-g~ 130 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITDD-GK 130 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-CC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECCC-CC
Confidence 45678999999999988887778899999976 43322111234567899999998 5777777778899999983 21
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.. ..........+..+++.+++ +++++...++.|..||. +++.. .+.
T Consensus 131 ~~---------~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-------------~~~--------- 177 (299)
T 2z2n_A 131 IR---------EYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-------------EFK--------- 177 (299)
T ss_dssp EE---------EEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-------------EEE---------
T ss_pred EE---------EecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-------------Eee---------
Confidence 10 11122334568999999855 77777666788999998 54311 000
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
.+.....+.+++++++ ++++++...++.|.+||. +++. ..+. . ..... .+.+++++
T Consensus 178 --~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~-~~~~------------~------~~~~~-~~~~i~~~ 233 (299)
T 2z2n_A 178 --IPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEI-TEFK------------I------PTPNA-RPHAITAG 233 (299)
T ss_dssp --CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCE-EEEE------------C------SSTTC-CEEEEEEC
T ss_pred --CCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcE-EEEE------------C------CCCCC-CceeEEEC
Confidence 0112235788999998 777777667889999998 5431 1110 0 11112 48899999
Q ss_pred CCCCEEEEEecCCeEEEEECC
Q 004739 258 PNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~ 278 (732)
++|+++++...++.|.+||..
T Consensus 234 ~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 234 AGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp STTCEEEEETTTTEEEEEETT
T ss_pred CCCCEEEeccCCceEEEECCC
Confidence 999866665578899999983
No 215
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.85 E-value=6.8e-08 Score=98.56 Aligned_cols=233 Identities=10% Similarity=-0.017 Sum_probs=137.3
Q ss_pred hhccccEeeeccCCceeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeeEEEEccC-C-----CcCeEEEEE
Q 004739 7 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-H-----SANVFCTKF 70 (732)
Q Consensus 7 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~----------~dg~i~vWd~~~~~~~~~~~~~-h-----~~~V~~~~~ 70 (732)
.+++.+.++..-..+ .+.++|||++++++. .++.|.+||+.+++.+.++..+ . ......+.|
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~ 131 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence 456777777655566 799999999888876 3688999999999999998422 0 134568999
Q ss_pred ecCCCCCEEEEEEC--CCcEEE--EEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 004739 71 VPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF 146 (732)
Q Consensus 71 s~~~~g~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~ 146 (732)
+|+ |++++.+.. +..|.+ +|+.+ +..+.- ... +.+.|++...+++.+.|+.+.+.|+
T Consensus 132 SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 132 CAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 999 578887764 467888 88874 111110 011 1233445566666777787777777
Q ss_pred CC-----CCCCCC----CCCC-----Cccc---------ceEEeeccCCccccccCCCC----------CccceEEEEec
Q 004739 147 RQ-----GSSCPP----AGSS-----HQEC---------RNILLDLRCGAKRSLADPPK----------QTLSLKSCDIS 193 (732)
Q Consensus 147 ~~-----~~~~~~----~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~----------~~~~v~~i~~~ 193 (732)
.+ ++.... ...+ .... ....++...+....+....- .......+.++
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred ccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 65 221110 0000 0000 11112221111000000000 00111126799
Q ss_pred CCCCCEEEEE-e---C-----CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE-E
Q 004739 194 STRPHLLLVG-G---S-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-V 263 (732)
Q Consensus 194 ~~~~~~l~tg-~---~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~-l 263 (732)
|+ ++.++++ . . ++.+.++|+.+.+.+..+.. +.....++|+|+|++ +
T Consensus 273 ~d-g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 273 KN-TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAIIAAQDGASDN 329 (368)
T ss_dssp TT-TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEEECCSSSCEE
T ss_pred CC-CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCEEE
Confidence 99 4555544 3 2 23566999999876655421 113778999999985 5
Q ss_pred EEEe-cCCeEEEEECCCCCCc
Q 004739 264 LLSY-SGEHVYLMDVNHAGGR 283 (732)
Q Consensus 264 ~~~~-~dg~v~iwd~~~~~~~ 283 (732)
++.. .++.|.++|+.+.+..
T Consensus 330 va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEE
T ss_pred EEccCCCCeEEEEECCCCcEE
Confidence 5555 4899999999996543
No 216
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.82 E-value=1.4e-06 Score=87.00 Aligned_cols=200 Identities=7% Similarity=-0.038 Sum_probs=133.9
Q ss_pred cCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 18 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
+...+.++++.++|+++++...++.|..||.. ++............+.++++.++ |.++++...++.|..+|.. +.
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-SC
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-CC
Confidence 34678999999999988877777899999988 65532221234467899999987 5777777668889999876 21
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.. ...+......+.++++.+++ +++++...++.|..+|. +++.. .+.
T Consensus 136 ~~---------~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-------------~~~--------- 182 (300)
T 2qc5_A 136 IY---------EYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-------------EYP--------- 182 (300)
T ss_dssp EE---------EEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-------------EEE---------
T ss_pred EE---------EccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-------------Eee---------
Confidence 10 11122234578899999955 67766666788999987 44310 011
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
.+.....+.++.++++ ++++++....+.|.+||. +++.. .+ .. ..... .+.+++++
T Consensus 183 --~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~------------~~------~~~~~-~~~~i~~d 238 (300)
T 2qc5_A 183 --LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEIS-EY------------DI------PTPNA-RPHAITAG 238 (300)
T ss_dssp --CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EE------------EC------SSTTC-CEEEEEEC
T ss_pred --CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEE-EE------------EC------CCCCC-CceEEEEC
Confidence 0112236788999998 677777666788999998 33211 11 00 01111 47899999
Q ss_pred CCCCEEEEEecCCeEEEEECC
Q 004739 258 PNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~ 278 (732)
++|++.++...++.|..|+..
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp STTCEEEEETTTTEEEEECTT
T ss_pred CCCCEEEeccCCCeEEEECCC
Confidence 999866665567899999983
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.81 E-value=5.8e-08 Score=99.31 Aligned_cols=145 Identities=16% Similarity=0.162 Sum_probs=104.4
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
.+.. |+.++| |+++|+++ .++.|++||+.+....... ..|...|.++.+.+. + ++++..||.|.+||+...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN---T-LVILNSVNDLSALDLRTK 156 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS---E-EEEEETTSEEEEEETTTC
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC---C-EEEEECCCCEEEEEccCC
Confidence 4666 999999 99999999 7899999999877655555 577888998888765 3 888899999999999853
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
. .. .+...|++++|+|.+ ++.|..||.+++|+....+.. ....+ ... ..
T Consensus 157 ~-----------~~---~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~---------~k~~I---~~P--p~ 205 (388)
T 1xip_A 157 S-----------TK---QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEME---------KQFEF---SLP--SE 205 (388)
T ss_dssp C-----------EE---EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEE---------EEEEE---CCC--HH
T ss_pred c-----------cc---cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccc---------cccee---cCC--cc
Confidence 2 11 255689999999955 678999999999988665410 00000 000 01
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLV 202 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~t 202 (732)
+....++...|.++.|.++ +.++++
T Consensus 206 ~~~~~~~~~~V~sI~wl~~-~~flv~ 230 (388)
T 1xip_A 206 LEELPVEEYSPLSVTILSP-QDFLAV 230 (388)
T ss_dssp HHTSCTTTSEEEEEEESSS-SEEEEE
T ss_pred cccccCCCeeEEEEEEecC-CeEEEE
Confidence 1111235578999999997 666665
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.77 E-value=1.2e-07 Score=96.71 Aligned_cols=78 Identities=8% Similarity=-0.060 Sum_probs=62.2
Q ss_pred ccCCCCEEEEecC---------CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCC-eEEEec-CCCcEEEEcCCCCCC
Q 004739 604 LGQRGDYIASGSD---------DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDC-VVATSG-IDNTIKIWTPSASVP 672 (732)
Q Consensus 604 ~s~dg~~lasgs~---------Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~-~l~S~s-~D~~i~vW~~~~~~~ 672 (732)
++||+++|..+.. +..+.++|+.+++.++++.... ...+++|+|||+ ++++.. .+++|.|+|+.+.+.
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 5888887765432 2356699999999999987654 689999999997 677777 599999999999999
Q ss_pred ccccCCCCCC
Q 004739 673 SIVSGGAAGP 682 (732)
Q Consensus 673 ~~~~~gh~~~ 682 (732)
+.+.....+|
T Consensus 350 v~~I~vg~~P 359 (368)
T 1mda_H 350 QSSVELDKGP 359 (368)
T ss_dssp EEECCCCSCC
T ss_pred EEEEECCCCC
Confidence 8877654444
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.77 E-value=4.2e-07 Score=102.61 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=48.7
Q ss_pred ccCCCCEEEEecCCC---cEEEEEcCcccEEEEEe-cCcccEEEEeecCCCCeEEEecCC----CcEEEEcCCCCCC
Q 004739 604 LGQRGDYIASGSDDG---RWFIWEKQTGRLIKMLL-GDEAVVNCVQCHPFDCVVATSGID----NTIKIWTPSASVP 672 (732)
Q Consensus 604 ~s~dg~~lasgs~Dg---~i~iWd~~tg~~~~~l~-gH~~~V~~v~fsp~~~~l~S~s~D----~~i~vW~~~~~~~ 672 (732)
+++++++|+....++ .|++||+..+. ...+. .+...|..+.++|++..|+-...+ ++|..||+.+++.
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 578888887665544 78999988554 45554 456778999999998855544434 7899999987753
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.77 E-value=1.7e-06 Score=87.68 Aligned_cols=198 Identities=8% Similarity=-0.059 Sum_probs=119.1
Q ss_pred CceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
.-..+.+|+|++ .++++...++.|.+||..+++... + .....+.++.|+|+ |+++++. .+ .|.+||..++..
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--~~~~~v~~i~~~~d--g~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H--ALPFMGSALAKISD--SKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--ECSSCEEEEEEEET--TEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E--ECCCcceEEEEeCC--CeEEEEE-CC-CEEEEECCCCcE
Confidence 345678999975 466666678899999998876543 3 23467999999998 4666654 44 499999875431
Q ss_pred CCCCCCCCCCceeec-c-ccCceeEEEEecCCCcEEEEEeC------CCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 99 RGLDDNAITPSALYQ-C-HTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~-~-h~~~v~~l~~~p~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
.. +.... . ....+++++++|++ +++++... .+.|..++ +++. ..+.
T Consensus 122 ~~--------~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~--- 175 (326)
T 2ghs_A 122 TL--------HAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLF--- 175 (326)
T ss_dssp EE--------EECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEE---
T ss_pred EE--------EeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE------------EEee---
Confidence 10 11111 1 12468899999965 66554432 13444444 3220 0000
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEE-EEEeCCCeEEEEECC--CC-CCCcccccCCCCCCccccccccccccCCC
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGR 246 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~tg~~dg~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (732)
........++|+|+ ++.| ++.+.++.|.+||+. ++ ..... ..+..+ ...
T Consensus 176 -----------~~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--------~~~~~~-------~~~ 228 (326)
T 2ghs_A 176 -----------ADISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGKA--------EVFIDS-------TGI 228 (326)
T ss_dssp -----------EEESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSCC--------EEEEEC-------TTS
T ss_pred -----------CCCcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccCc--------eEEEEC-------CCC
Confidence 01114568999999 5555 555567899999986 33 21100 000000 011
Q ss_pred ccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 247 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 247 ~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
.. .+..++++++|.+.++...++.|.+||..
T Consensus 229 ~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 229 KG-GMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp SS-EEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred CC-CCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 11 36789999999877766667899999983
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.76 E-value=1.2e-06 Score=88.75 Aligned_cols=193 Identities=11% Similarity=0.122 Sum_probs=118.8
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC---CCcCeEEEEEecCCCCCEEEEEECC----CcEEEE
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAGD----AEVRLF 91 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~---h~~~V~~~~~s~~~~g~~l~s~~~d----g~i~vw 91 (732)
...+.+++|+++|+++++. .+ .|.+||..+++........ ....+.++.++|+ |+++++...+ +...||
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence 4679999999999877765 44 4999999888754332111 1246899999998 4766655422 233444
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC--CC-CCCCCCCCCCcccceEEee
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~ 168 (732)
.+.. +. +..+..+....+.++|+|++..++++.+.++.|.+||+. ++ ... ....+..
T Consensus 165 ~~~~--g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~ 224 (326)
T 2ghs_A 165 HVAK--GK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID 224 (326)
T ss_dssp EEET--TE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred EEeC--Cc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence 4432 21 222323344578999999764455555667899999986 33 210 0011111
Q ss_pred ccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcc
Q 004739 169 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 248 (732)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (732)
+ .........+.++++ ++++++...++.|.+||. +++.+..+. .+..
T Consensus 225 ~-----------~~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------------~~~~ 271 (326)
T 2ghs_A 225 S-----------TGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYE--------------------VPGK 271 (326)
T ss_dssp C-----------TTSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEE--------------------CSCS
T ss_pred C-----------CCCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEE--------------------CCCC
Confidence 1 111224578899998 677777767789999998 343332221 1111
Q ss_pred ccEEEEEEc-CCCCEEEEEecC
Q 004739 249 LHLTHVTFS-PNGEEVLLSYSG 269 (732)
Q Consensus 249 ~~i~~l~~s-p~g~~l~~~~~d 269 (732)
.+++++|+ |+++.|++++..
T Consensus 272 -~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 -QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -BEEEEEEESTTSCEEEEEEBC
T ss_pred -CcEEEEEecCCCCEEEEEecC
Confidence 48999998 898888766654
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.75 E-value=2.6e-09 Score=110.54 Aligned_cols=183 Identities=11% Similarity=0.095 Sum_probs=102.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
++..|++++.|+.|+.||..+|+.+.++ .. +.+.+..+..+ +..+++++.|+.|+.||..+++. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~----------~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-KE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEG----------L 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE-EC--CCSCCCC-------CCEEECTTTCCEEEC-----CC----------S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe-cC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCce----------e
Confidence 5778999999999999999999999888 33 45555555665 46778778999999999986543 2
Q ss_pred eeeccccC-cee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004739 110 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 187 (732)
Q Consensus 110 ~~~~~h~~-~v~-~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 187 (732)
..+..+.. .+. +..+. .+ ..+++++.|+.|+.||..+++.. |..... .
T Consensus 73 w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~--- 122 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F--- 122 (369)
T ss_dssp EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred eeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence 22222111 110 00111 23 46777888999999999988742 111110 0
Q ss_pred EEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC---CEEE
Q 004739 188 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL 264 (732)
Q Consensus 188 ~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g---~~l~ 264 (732)
...++|+ +..+++++.|+.|+.||.++++.+-.+... .....++.++. ..++
T Consensus 123 -~~~~~p~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 123 -ADSLSPS-TSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred -ccccccc-CCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence 1234455 668888999999999999988754332100 01112233322 4577
Q ss_pred EEecCCeEEEEECCCCCC
Q 004739 265 LSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 265 ~~~~dg~v~iwd~~~~~~ 282 (732)
+++.+|.|+.||..+++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEETSCEEEEECTTTCCE
T ss_pred EECCCCEEEEEECCCCcE
Confidence 888999999999998753
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.72 E-value=3e-07 Score=92.41 Aligned_cols=208 Identities=11% Similarity=0.051 Sum_probs=126.9
Q ss_pred cccEeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 10 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 10 ~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
..+..+..+........|+|+|+ +++++..++.|..|+. +++ ...+ ..+...+.+++++++ |+++++...++.|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v 109 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAI 109 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE-EESCSCEEEEEECTT--SCEEEEETTTTEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE-eCCCCccceeeECCC--CCEEEEECCCCEE
Confidence 34555666677788999999998 6677778899999998 454 3334 345667899999998 4766655556789
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccc-cCceeEEEEecCCCcEEEE----EeC-------------CCcEEEEECCCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDFRQGS 150 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s----~s~-------------dg~i~vwd~~~~~ 150 (732)
.+|+.. +.... ......+. ...++.+++.|++ +++++ |.. .+.|..+|..+++
T Consensus 110 ~~~~~~-g~~~~-------~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 110 TRSDAD-GQAHL-------LVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp EEECTT-SCEEE-------EECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred EEECCC-CCEEE-------EEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 999875 21100 00111111 2346789999955 67765 321 2456666665544
Q ss_pred CCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC------CeEEEEECCCCCCCcccc
Q 004739 151 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPLTSCQ 224 (732)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~ 224 (732)
.. .+. .......++|+|+ ++.|+.+... +.|++||+.... +...
T Consensus 181 ~~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~- 230 (305)
T 3dr2_A 181 LQ-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR- 230 (305)
T ss_dssp CE-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-EEEE-
T ss_pred EE-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-
Confidence 11 010 1124578999999 6767666554 789999987542 1110
Q ss_pred cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+... ... ....++++++|+ |.+++.+ .|.+|+...
T Consensus 231 ---------~~~~~~------~~~-~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 231 ---------RHFASV------PDG-LPDGFCVDRGGW-LWSSSGT-GVCVFDSDG 267 (305)
T ss_dssp ---------EEEECC------SSS-CCCSEEECTTSC-EEECCSS-EEEEECTTS
T ss_pred ---------eEEEEC------CCC-CCCeEEECCCCC-EEEecCC-cEEEECCCC
Confidence 000000 011 245688999999 5555544 599998743
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.69 E-value=1.7e-06 Score=97.00 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=42.1
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEEecCccc-EEEEeecCCCC-eEEEec
Q 004739 605 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAV-VNCVQCHPFDC-VVATSG 657 (732)
Q Consensus 605 s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~-V~~v~fsp~~~-~l~S~s 657 (732)
+..+.+|+.|+.||.++.||.+||+++.+++.+.+. .+-+.|..+|+ |++..+
T Consensus 483 ~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 483 STAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 557889999999999999999999999999865433 35577788997 555443
No 225
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=3.6e-06 Score=80.95 Aligned_cols=225 Identities=8% Similarity=-0.028 Sum_probs=135.8
Q ss_pred hccccEeeeccCCc--eeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE
Q 004739 8 RLSQERELEGHQGC--VNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 8 ~~~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~--dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
+.+.++++. |... ...++|++|+.++++.+. ++.|++.|+.+++.+..+..+.......+.+..+ .+.++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~---~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE---KLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT---EEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC---EEEEEEe
Confidence 455667773 5533 579999999866666553 5799999999999998873222222345556532 5555555
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccc
Q 004739 84 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR 163 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 163 (732)
.++.+.++|..+.+ .+..+..-.. ....+++++..++++ ..++.|.++|..+.+...
T Consensus 84 ~~~~v~viD~~t~~----------v~~~i~~g~~--~g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~---------- 140 (266)
T 2iwa_A 84 LKNIGFIYDRRTLS----------NIKNFTHQMK--DGWGLATDGKILYGS-DGTSILYEIDPHTFKLIK---------- 140 (266)
T ss_dssp TCSEEEEEETTTTE----------EEEEEECCSS--SCCEEEECSSSEEEE-CSSSEEEEECTTTCCEEE----------
T ss_pred cCCEEEEEECCCCc----------EEEEEECCCC--CeEEEEECCCEEEEE-CCCCeEEEEECCCCcEEE----------
Confidence 68999999998642 2344431101 123455666566655 467899999998866220
Q ss_pred eEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccccccccc
Q 004739 164 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 243 (732)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (732)
.+... ........++.+.|. + +..++....++.|.+.|+.+++.+..+.... ..+.....
T Consensus 141 ~I~Vg----------~~~~p~~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g--------~~~~~~~~ 200 (266)
T 2iwa_A 141 KHNVK----------YNGHRVIRLNELEYI-N-GEVWANIWQTDCIARISAKDGTLLGWILLPN--------LRKKLIDE 200 (266)
T ss_dssp EEECE----------ETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEEETTTCCEEEEEECHH--------HHHHHHHT
T ss_pred EEEEC----------CCCcccccceeEEEE-C-CEEEEecCCCCeEEEEECCCCcEEEEEECCC--------cccccccc
Confidence 00000 000001135677777 4 6556665568899999999988766553210 00000000
Q ss_pred CCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004739 244 HGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 279 (732)
Q Consensus 244 ~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~ 279 (732)
........+.++|+|+++.|++++ ..+.|++.++..
T Consensus 201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 001112478999999987666665 478999998876
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.62 E-value=3.5e-06 Score=94.42 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=51.8
Q ss_pred CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCCC
Q 004739 617 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGA 679 (732)
Q Consensus 617 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~gh 679 (732)
+|+|+.||+.||+.+.++..|.. +..-.++..+.+++.++.|+.|++||.++++++..+...
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 68999999999999999887643 344466777889999999999999999999999766543
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=4.3e-06 Score=93.45 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=51.2
Q ss_pred CCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004739 617 DGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 677 (732)
Q Consensus 617 Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~ 677 (732)
.|.|..||+.||+.+.++.. ...+.+..++.++.+++.++.|+.+++||.++++.+..+.
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 48899999999999988873 4456666778888888889999999999999999988765
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=2.6e-05 Score=87.21 Aligned_cols=226 Identities=13% Similarity=0.067 Sum_probs=117.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCC----cCeEEEEEecCCCCCEEEEEEC------CCcEEEEEcCCCCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFSGR 99 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~----~~V~~~~~s~~~~g~~l~s~~~------dg~i~vwd~~~~~~~ 99 (732)
++..|+.++.|+.|..+|..+|+.+.++..... ..+.+--...+ ..++.++. ++.|+.+|..+++..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~---~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK---GKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET---TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC---CEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 356788888999999999999999988832201 12221111112 45555543 689999999875421
Q ss_pred CCC---CCC-CCCc---------eeec---------cccCceeEEEEecCCCcEEEEEeCCC------------------
Q 004739 100 GLD---DNA-ITPS---------ALYQ---------CHTRRVKKLAVEVGNPHVVWSASEDG------------------ 139 (732)
Q Consensus 100 ~~~---~~~-~~~~---------~~~~---------~h~~~v~~l~~~p~~~~~l~s~s~dg------------------ 139 (732)
-.. ... ..+. ..+. +.......+++.|++ .+++.+..++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeee
Confidence 100 000 0000 0000 111222457888855 6666666554
Q ss_pred -cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCC---CEEEEEeCCCeEEEEECC
Q 004739 140 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARLYDRR 215 (732)
Q Consensus 140 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~l~tg~~dg~v~iwd~~ 215 (732)
.|..+|..+++ .+|..+...... ..... .....-+....+ | ..++.++.+|.|+++|.+
T Consensus 283 ~sv~AlD~~TG~--------------~~W~~~~~~~d~-wd~~~-~~~p~l~~~~~d-G~~~~~l~~~~~~G~l~~lD~~ 345 (677)
T 1kb0_A 283 ASIVALDPDTGK--------------YKWHYQETPGDN-WDYTS-TQPMILADIKIA-GKPRKVILHAPKNGFFFVLDRT 345 (677)
T ss_dssp TEEEEECTTTCC--------------EEEEEESSTTCC-SCCCC-CSCCEEEEEEET-TEEEEEEEECCTTSEEEEEETT
T ss_pred EEEEEEECCCCC--------------EEEEEecCCCcc-ccccc-CCCcEEEecccC-CcEeeEEEEECCCCEEEEEECC
Confidence 48888888776 233322211000 00000 011122223234 4 678999999999999999
Q ss_pred CCCCCcccccCCCC------CCcccccccc--------cc--ccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 216 MLPPLTSCQKRMSP------PPCVNYFCPM--------HL--SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 216 ~~~~~~~~~~~~~~------~~~~~~~~~~--------~~--~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
+++.+......... ..|...+.+. .. ...|... -..++|+|++.++++...+-...++...
T Consensus 346 tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~--w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 346 NGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN--WHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp TCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC--SSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred CCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC--CCCceEcCCCCEEEEeChhcceeeeccc
Confidence 99876554322100 0000000000 00 0011111 2357899999999988877665555443
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.52 E-value=1.1e-06 Score=89.94 Aligned_cols=221 Identities=9% Similarity=0.011 Sum_probs=126.8
Q ss_pred ccCCceeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeeEEEEccC-----CCcCeEEEEEecCCCCCEEEEEE---
Q 004739 17 GHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETG-----HSANVFCTKFVPETSDELVVSGA--- 83 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~-----dg~i~vWd~~~~~~~~~~~~~-----h~~~V~~~~~s~~~~g~~l~s~~--- 83 (732)
+|-..+..++++++|+++++-.. ++.|.+||+.+++.+..+... +...+..++++|+. +..+++-.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~ 142 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPD 142 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccC
Confidence 45678999999999987776543 578999999999877666221 22456899999863 35556655
Q ss_pred CCCcEEEEEcCCCCCCCCCCC--CCCC---ceeecc--------------ccCceeEEEEecCCCcEEEEEeCCC-cEEE
Q 004739 84 GDAEVRLFNLSRFSGRGLDDN--AITP---SALYQC--------------HTRRVKKLAVEVGNPHVVWSASEDG-TLRQ 143 (732)
Q Consensus 84 ~dg~i~vwd~~~~~~~~~~~~--~~~~---~~~~~~--------------h~~~v~~l~~~p~~~~~l~s~s~dg-~i~v 143 (732)
.++.|.+||+.++........ ...+ .....+ ....++.|+|+|++ +.|+.+..++ .|..
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYR 221 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEE
Confidence 678999999975432110000 0000 000011 11346889999965 6666666555 4444
Q ss_pred EECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004739 144 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 223 (732)
Q Consensus 144 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~ 223 (732)
++....... .. ...... ..+. ..++......++++++ ++++++...++.|.+||..+++. ..+
T Consensus 222 ~~~~~~~~~--~~-~~~~~~-----------~~~~-~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~-~~~ 284 (343)
T 2qe8_A 222 IKSADLSNL--QL-TDAELG-----------SKIE-RYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAY-KLL 284 (343)
T ss_dssp EEHHHHTCT--TC-CHHHHH-----------TTCE-EEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEE-EEE
T ss_pred EEHHHhcCC--CC-Chhhhh-----------cceE-ecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCE-EEE
Confidence 443211100 00 000000 0000 0011113456899998 78888888899999999844421 111
Q ss_pred ccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004739 224 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 275 (732)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw 275 (732)
. ........++++|.++++++++.+..+.+.+|
T Consensus 285 ~-------------------~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 285 V-------------------TDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp E-------------------ECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred E-------------------ECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 0 00111248899999999877777655544444
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.50 E-value=3e-06 Score=85.02 Aligned_cols=198 Identities=9% Similarity=0.020 Sum_probs=119.7
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEc--cC-CCcCeEEEEEecCCCCCEEEE----EEC
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TG-HSANVFCTKFVPETSDELVVS----GAG 84 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~--~~-h~~~V~~~~~s~~~~g~~l~s----~~~ 84 (732)
...+..+...+..++++++|+++++...++.|.+|+.. ++...... .+ ....+.++.++|+ |.++++ |..
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~ 154 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLR 154 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGS
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCcc
Confidence 34555567788999999999977766666889999976 55332220 11 1234678999998 577776 321
Q ss_pred -------------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC------CcEEEEE
Q 004739 85 -------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHD 145 (732)
Q Consensus 85 -------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d------g~i~vwd 145 (732)
.+.|..+|..++. +..+. .....+.++|+|++ +.|+.+... +.|.+|+
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~ 221 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSP-----------LQRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFA 221 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCC-----------CEEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEE
T ss_pred ccccccccccccCCCeEEEEcCCCCc-----------EEEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEE
Confidence 2456666665422 12222 34567889999966 555555443 6899999
Q ss_pred CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccccc
Q 004739 146 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK 225 (732)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~ 225 (732)
+.... . .....+... .......+.++++ +++. +++.+ .|.+||.. ++.+..+.
T Consensus 222 ~~~~~-l--------~~~~~~~~~-------------~~~~pdgi~~d~~-G~lw-v~~~~-gv~~~~~~-g~~~~~~~- 274 (305)
T 3dr2_A 222 WRDGA-L--------HDRRHFASV-------------PDGLPDGFCVDRG-GWLW-SSSGT-GVCVFDSD-GQLLGHIP- 274 (305)
T ss_dssp EETTE-E--------EEEEEEECC-------------SSSCCCSEEECTT-SCEE-ECCSS-EEEEECTT-SCEEEEEE-
T ss_pred ecCCC-c--------cCCeEEEEC-------------CCCCCCeEEECCC-CCEE-EecCC-cEEEECCC-CCEEEEEE-
Confidence 86532 0 000111111 0113456788988 6644 44444 59999984 43332221
Q ss_pred CCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEE
Q 004739 226 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY 273 (732)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~ 273 (732)
.+. .+.+++|.|+++.|++++.++..+
T Consensus 275 -------------------~~~--~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 275 -------------------TPG--TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -------------------CSS--CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -------------------CCC--ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 111 277899999999999888764433
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.48 E-value=8.3e-06 Score=83.52 Aligned_cols=256 Identities=14% Similarity=0.100 Sum_probs=138.2
Q ss_pred Ec--CCCCEEEEE-eCCCcEEEEeCCCC----eeEEEEc----c-C-CCcCeEEEEEecCCCCCEEEEEECC------Cc
Q 004739 27 WN--SKGSLLISG-SDDTHINVWSYSSR----KLLHSIE----T-G-HSANVFCTKFVPETSDELVVSGAGD------AE 87 (732)
Q Consensus 27 ~s--~dg~~lasg-~~dg~i~vWd~~~~----~~~~~~~----~-~-h~~~V~~~~~s~~~~g~~l~s~~~d------g~ 87 (732)
++ +++++|+.. ..+++|.|+|+.+. +..+.+. . . -...-..+..+|+ | +++++..+ +.
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGG 165 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCe
Confidence 36 788877664 56789999998755 5666551 0 1 1113456777888 5 77777666 78
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeecc--cc-CceeEEEEecCCCcEEEEEe-------------------CCCcEEEEE
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQC--HT-RRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQHD 145 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-~~v~~l~~~p~~~~~l~s~s-------------------~dg~i~vwd 145 (732)
|.+.|..+.+ .+..+.. .. .--..+.|+|++ +.+++.. .+.+|.+||
T Consensus 166 v~vlD~~T~~----------v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 166 ILMLDHYSFE----------PLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp EEEECTTTCC----------EEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred EEEEECCCCe----------EEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 9999998743 2333331 11 123457889965 6777764 367899999
Q ss_pred CCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEE--ecCCCCCEEEEEe------CCCeEEEEECCCC
Q 004739 146 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD--ISSTRPHLLLVGG------SDAFARLYDRRML 217 (732)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~~~~~~~~l~tg~------~dg~v~iwd~~~~ 217 (732)
+.+++.. ..+.+. . .......+. |+|+ ++++.+++ .+++|.+|....+
T Consensus 235 ~~~~k~~------------~tI~vg----------~-~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 235 LRKRKRI------------HSLTLG----------E-ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp TTTTEEE------------EEEESC----------T-TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred CCCCcEe------------eEEecC----------C-CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecCC
Confidence 9876421 001110 0 111223444 4998 55655554 6678887766532
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCccee--eecCCCCc
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMR--YTVGDASK 294 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~~~~~~~ 294 (732)
+ .........+...+....+......+........+.++|||++|+++.. .+.|.+||+......... ...+....
T Consensus 291 ~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~ 369 (462)
T 2ece_A 291 K-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH 369 (462)
T ss_dssp E-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred c-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence 1 1110000000000000000000000000113677999999999999877 789999999754322211 11111111
Q ss_pred eeeeccCCCCccCCCCCCccCCCccccc
Q 004739 295 IMSFTPTLNGLELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 322 (732)
... .|...........++++|||+.+.
T Consensus 370 ~~~-~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 370 RAD-HPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp CBC-CTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccc-ccccccCCCCCCEEEEcCCCCEEE
Confidence 111 111122334578899999999876
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.48 E-value=6e-06 Score=78.29 Aligned_cols=209 Identities=9% Similarity=-0.008 Sum_probs=125.2
Q ss_pred ccccEeeeccCCc--eeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEE--EEEecCCCCCEEEEE
Q 004739 9 LSQERELEGHQGC--VNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFC--TKFVPETSDELVVSG 82 (732)
Q Consensus 9 ~~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~--~~~s~~~~g~~l~s~ 82 (732)
.+.++++ .|... ...+.|+ ++.++.+++.+| .|+++|+.+++.+.++.. ...... +.+..+ .+.+..
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~---~ly~lt 103 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKD---KIVGLT 103 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETT---EEEEEE
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCC---EEEEEE
Confidence 4556666 45443 3678998 777777777766 899999999999988832 233433 444432 455555
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCccc
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 162 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 162 (732)
-.++.+.++|..+.+ .+.++.-- . ....+++++..++++- .++.|.++|..+.+...
T Consensus 104 w~~~~v~v~D~~t~~----------~~~ti~~~-~--eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~--------- 160 (262)
T 3nol_A 104 WKNGLGFVWNIRNLR----------QVRSFNYD-G--EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR--------- 160 (262)
T ss_dssp SSSSEEEEEETTTCC----------EEEEEECS-S--CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---------
T ss_pred eeCCEEEEEECccCc----------EEEEEECC-C--CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---------
Confidence 568999999998743 24444421 1 2233345564555554 46789999998876320
Q ss_pred ceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccc
Q 004739 163 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS 242 (732)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (732)
.+ . +.........++.+.|. + +.+++..-.++.|.+.|.++++.+..+......+.+. .
T Consensus 161 --~I-~--------V~~~g~~~~~lNELe~~-~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~-------~- 219 (262)
T 3nol_A 161 --TI-T--------VTAHGEELPELNELEWV-D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG-------P- 219 (262)
T ss_dssp --EE-E--------CEETTEECCCEEEEEEE-T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC-------S-
T ss_pred --EE-E--------eccCCccccccceeEEE-C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc-------c-
Confidence 00 0 00000000134456665 4 6666665578899999999998766654321110000 0
Q ss_pred cCCCccccEEEEEEcCCCCEEEEEecC
Q 004739 243 EHGRSSLHLTHVTFSPNGEEVLLSYSG 269 (732)
Q Consensus 243 ~~~~~~~~i~~l~~sp~g~~l~~~~~d 269 (732)
........+.|+|+|+++.|++.+..
T Consensus 220 -~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 220 -LPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -ccCcCCceEEEEEcCCCCEEEEECCC
Confidence 00112247899999999888887764
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.44 E-value=6.1e-05 Score=73.67 Aligned_cols=202 Identities=7% Similarity=0.025 Sum_probs=123.2
Q ss_pred CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
..+..++|++++..|. +-..++.|.++++........+ ........+++++|++ +.++++-...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~- 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQ- 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCC-
Confidence 4567899999765555 4456789999998766543333 2333567899999974 3555555567889999987421
Q ss_pred CCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 99 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 99 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
...+ .........++++|+++.++++... .+.|..+++..... ..+..
T Consensus 113 ----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~~------- 163 (267)
T 1npe_A 113 ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ------- 163 (267)
T ss_dssp ----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC-------
T ss_pred ----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEEE-------
Confidence 1111 1122457899999966566655543 46788888753221 01110
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
........++++++++.++++-...+.|.++|+....... +.. .. . ....++
T Consensus 164 ------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~--------------~~~-----~~--~-~P~gi~ 215 (267)
T 1npe_A 164 ------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK--------------VLE-----GL--Q-YPFAVT 215 (267)
T ss_dssp ------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE--------------EEE-----CC--C-SEEEEE
T ss_pred ------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE--------------Eec-----CC--C-CceEEE
Confidence 0112467899999855555666667899999987532110 000 00 1 234566
Q ss_pred EcCCCCEEEEEe-cCCeEEEEECCCCCCc
Q 004739 256 FSPNGEEVLLSY-SGEHVYLMDVNHAGGR 283 (732)
Q Consensus 256 ~sp~g~~l~~~~-~dg~v~iwd~~~~~~~ 283 (732)
+. +..|+.+. ..+.|.++|..+++..
T Consensus 216 ~d--~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 216 SY--GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred Ee--CCEEEEEECCCCeEEEEeCCCCCce
Confidence 54 45565555 4689999999886543
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.42 E-value=0.0001 Score=76.17 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC--------CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h--------~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
++..|++++.++.|..+|..+++.+..+.... ...+.+.-...+ ..++.++.++.|..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~v~~~~g~l~a~d~~tG~~--- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---GHVYIGSEKAQVYALNTSDGTV--- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---TEEEEEETTSEEEEEETTTCCE---
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---CEEEEEcCCCEEEEEECCCCCE---
Confidence 35678888888999999999999887763221 222322222222 5788888999999999987532
Q ss_pred CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
+................ + ..++.++.++.|..+|..+++. +|....... .....
T Consensus 126 -------~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~--------------~W~~~~~~~--~~~~~ 179 (376)
T 3q7m_A 126 -------AWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV--------------KWTVNLDMP--SLSLR 179 (376)
T ss_dssp -------EEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE--------------EEEEECCC-------C
T ss_pred -------EEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEEEeCCCC--ceeec
Confidence 22222221111112222 3 4677788899999999988862 232221110 00000
Q ss_pred CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004739 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 261 (732)
Q Consensus 182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 261 (732)
....+ ... +..+++++.++.|..+|..+++.+-........... .. ..+. .....++ + .+.
T Consensus 180 ~~~~~----~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~--~~--~~~~--~~~~~p~----~--~~~ 240 (376)
T 3q7m_A 180 GESAP----TTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGST--EI--DRLS--DVDTTPV----V--VNG 240 (376)
T ss_dssp CCCCC----EEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------------CCCCCCE----E--ETT
T ss_pred CCCCc----EEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCc--cc--cccc--ccCCCcE----E--ECC
Confidence 00111 111 236788888999999999988754333211000000 00 0000 0000011 1 245
Q ss_pred EEEEEecCCeEEEEECCCCC
Q 004739 262 EVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~~~ 281 (732)
.+++++.++.|..+|..+++
T Consensus 241 ~v~~~~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLRSGQ 260 (376)
T ss_dssp EEEEECTTSCEEEEETTTCC
T ss_pred EEEEEecCcEEEEEECCCCc
Confidence 68888889999999998864
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.39 E-value=2.2e-06 Score=86.97 Aligned_cols=181 Identities=11% Similarity=0.167 Sum_probs=102.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 23 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 23 ~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
.+..+..++. |..++.++.|..|| .+++.+..+ ......+.++...++ ..|..++.+ |..+|.. +..
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-~~~~~~~~~~~~~~~---g~l~v~t~~--l~~~d~~---g~~-- 89 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-KSGEIIECRPSIGKD---GTIYFGSDK--VYAINPD---GTE-- 89 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-CGGGEEEECCEETTT---TEECCSSCE--EEEECCC---GGG--
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-ecCCCcccceEEecC---CcEEEecCc--EEEECCC---CcE--
Confidence 3445555665 55667788999999 888877665 334445566666665 345555544 8888753 211
Q ss_pred CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCC
Q 004739 103 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK 182 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (732)
+..+...........+. + ..++.++.++.|..+|.. ++. .+.....
T Consensus 90 ------~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~--------------~~~~~~~---------- 135 (330)
T 3hxj_A 90 ------KWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTE--------------KWRFKTK---------- 135 (330)
T ss_dssp ------GGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCE--------------EEEEECS----------
T ss_pred ------EEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCE--------------EEEEcCC----------
Confidence 12222122222223333 3 456678888999999987 541 1211110
Q ss_pred CccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCE
Q 004739 183 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE 262 (732)
Q Consensus 183 ~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~ 262 (732)
...+.++...++ + .+..++.++.|..+|.. ++.+..... ... .+.++.+.+++.
T Consensus 136 -~~~~~~~~~~~~-g-~l~vgt~~~~l~~~d~~-g~~~~~~~~--------------------~~~-~~~~~~~d~~g~- 189 (330)
T 3hxj_A 136 -KAIYATPIVSED-G-TIYVGSNDNYLYAINPD-GTEKWRFKT--------------------NDA-ITSAASIGKDGT- 189 (330)
T ss_dssp -SCCCSCCEECTT-S-CEEEECTTSEEEEECTT-SCEEEEEEC--------------------SSC-CCSCCEECTTCC-
T ss_pred -CceeeeeEEcCC-C-EEEEEcCCCEEEEECCC-CCEeEEEec--------------------CCC-ceeeeEEcCCCE-
Confidence 112334455555 4 46667888999999988 543322210 011 255567777887
Q ss_pred EEEEecCCeEEEEECCC
Q 004739 263 VLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 263 l~~~~~dg~v~iwd~~~ 279 (732)
|++++ +.|..|| .+
T Consensus 190 l~v~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 190 IYFGS--DKVYAIN-PD 203 (330)
T ss_dssp EEEES--SSEEEEC-TT
T ss_pred EEEEe--CEEEEEC-CC
Confidence 45555 7888898 44
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=4.1e-05 Score=71.95 Aligned_cols=212 Identities=11% Similarity=0.081 Sum_probs=124.8
Q ss_pred ccccEeeeccCC--ceeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC
Q 004739 9 LSQERELEGHQG--CVNAISWNSKGSLLISGSDD--THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG 84 (732)
Q Consensus 9 ~~~~~~l~~h~~--~V~~l~~s~dg~~lasg~~d--g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~ 84 (732)
.+.++++ .|.. -...+.|++ +.++.+.+.+ ..|+++|+.+++.+.++.-...---..+.+..+ .+.+..-.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~---~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRD---RLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT---EEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCC---EEEEEEee
Confidence 4566666 5654 355899986 6667777765 489999999999998873222211134444433 55555567
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 85 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 85 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
++.+.++|..+.+ .+.++..- ..-..+ .+++..+++|- .++.|.++|..+.+....
T Consensus 84 ~~~v~v~D~~tl~----------~~~ti~~~-~~Gwgl--t~dg~~L~vSd-gs~~l~~iDp~t~~~~~~---------- 139 (243)
T 3mbr_X 84 NHEGFVYDLATLT----------PRARFRYP-GEGWAL--TSDDSHLYMSD-GTAVIRKLDPDTLQQVGS---------- 139 (243)
T ss_dssp SSEEEEEETTTTE----------EEEEEECS-SCCCEE--EECSSCEEEEC-SSSEEEEECTTTCCEEEE----------
T ss_pred CCEEEEEECCcCc----------EEEEEeCC-CCceEE--eeCCCEEEEEC-CCCeEEEEeCCCCeEEEE----------
Confidence 8999999998743 24444321 222344 45565566554 478899999988763200
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 244 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (732)
+. +.........++.+.+. + ++.++..-.+..|.+.|.++++.+..+....-.+.... . .
T Consensus 140 --I~--------V~~~g~~~~~lNeLe~~-~-G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~ 199 (243)
T 3mbr_X 140 --IK--------VTAGGRPLDNLNELEWV-N-GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T 199 (243)
T ss_dssp --EE--------CEETTEECCCEEEEEEE-T-TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred --EE--------EccCCcccccceeeEEe-C-CEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence 00 00000001134555555 3 65665555688999999999987666543211111000 0 0
Q ss_pred CCccccEEEEEEcCCCCEEEEEecC
Q 004739 245 GRSSLHLTHVTFSPNGEEVLLSYSG 269 (732)
Q Consensus 245 ~~~~~~i~~l~~sp~g~~l~~~~~d 269 (732)
.......+.|+++|+++.|++.+.-
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CCcCCceEEEEEcCCCCEEEEECCC
Confidence 0112247899999988877777664
No 237
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.26 E-value=2.5e-05 Score=73.95 Aligned_cols=209 Identities=8% Similarity=-0.068 Sum_probs=123.2
Q ss_pred cccEeeeccCCc--eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCc
Q 004739 10 SQERELEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 87 (732)
Q Consensus 10 ~~~~~l~~h~~~--V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~ 87 (732)
+.++++ .|... ...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ ....---..+.+..+ .+.+..-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~---~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE---RLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS---CEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC---EEEEEEccCCE
Confidence 455666 34433 3678887 4677788888899999999999988877 332211233555443 56666667899
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEe
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL 167 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 167 (732)
+.+||..+.+ .+.++.. ...-..++ +++ ..|+.+..++.|.++|..+.+... .+
T Consensus 118 v~V~D~~Tl~----------~~~ti~~-~~eGwGLt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~~-----------~I- 171 (268)
T 3nok_A 118 LFTWSGMPPQ----------RERTTRY-SGEGWGLC--YWN-GKLVRSDGGTMLTFHEPDGFALVG-----------AV- 171 (268)
T ss_dssp EEEEETTTTE----------EEEEEEC-SSCCCCEE--EET-TEEEEECSSSEEEEECTTTCCEEE-----------EE-
T ss_pred EEEEECCcCc----------EEEEEeC-CCceeEEe--cCC-CEEEEECCCCEEEEEcCCCCeEEE-----------EE-
Confidence 9999998743 2344432 22223444 445 444444558899999998876320 00
Q ss_pred eccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCc
Q 004739 168 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
.+.........++.+.|. + +.+++..-.++.|.+.|.++++.+..+..... .+.........
T Consensus 172 --------~V~~~g~~v~~lNeLe~~-d-G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L--------~~~~~~~~~~~ 233 (268)
T 3nok_A 172 --------QVKLRGQPVELINELECA-N-GVIYANIWHSSDVLEIDPATGTVVGVIDASAL--------TRAVAGQVTNP 233 (268)
T ss_dssp --------ECEETTEECCCEEEEEEE-T-TEEEEEETTCSEEEEECTTTCBEEEEEECHHH--------HHHHTTTCCCT
T ss_pred --------EeCCCCcccccccccEEe-C-CEEEEEECCCCeEEEEeCCCCcEEEEEECCCC--------cccccccccCc
Confidence 000000111134566666 4 65665555688999999999987665532210 00000000011
Q ss_pred cccEEEEEEcCCCCEEEEEec
Q 004739 248 SLHLTHVTFSPNGEEVLLSYS 268 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~ 268 (732)
....+.|+++|+++.|++.+.
T Consensus 234 ~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 234 EAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCCEEEEEECTTTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEeCC
Confidence 224789999998776666654
No 238
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.23 E-value=0.00047 Score=65.78 Aligned_cols=231 Identities=11% Similarity=0.135 Sum_probs=134.9
Q ss_pred EeeeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 13 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 13 ~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
+.+.|-.+.+..++|+|++. ++++...++.|...|+. ++.+.++..+-......|++.++ +.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence 35667777899999999766 44456778899999988 88888773333356788999887 4666665567889999
Q ss_pred EcCCCCC-CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 92 NLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 92 d~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
++..... ....... .++. ....+.....|+|.|.+.+++ ++.+.....+|.+. +... .....++.+..
T Consensus 97 ~v~~~~~i~~~~~~~-~~~~-~~~~N~g~EGLA~d~~~~~L~-va~E~~p~~i~~~~-g~~~-------~~~l~i~~~~~ 165 (255)
T 3qqz_A 97 SLTPNSEVKILKKIK-IPLQ-ESPTNCGFEGLAYSRQDHTFW-FFKEKNPIEVYKVN-GLLS-------SNELHISKDKA 165 (255)
T ss_dssp EECTTCCEEEEEEEE-CCCS-SCCCSSCCEEEEEETTTTEEE-EEEESSSEEEEEEE-STTC-------SSCCEEEECHH
T ss_pred EcCCCCeeeeeeeec-cccc-cccccCCcceEEEeCCCCEEE-EEECcCCceEEEEc-cccc-------CCceeeecchh
Confidence 8865321 0000000 0000 012345578999999664455 45444445555554 1100 00111111100
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
+. .......+.+++++|..+++++.....+.|.++|... +.+..+.... .... ..+.-..
T Consensus 166 ------~~-~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~-----------g~~~-l~~~~~q 225 (255)
T 3qqz_A 166 ------LQ-RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTK-----------GSRG-LSHNIKQ 225 (255)
T ss_dssp ------HH-HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECST-----------TGGG-CSSCCCS
T ss_pred ------hc-cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCC-----------ccCC-cccccCC
Confidence 00 0011235689999999888888888889999999774 3333322110 0000 0000113
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~ 278 (732)
.-.|+|.++|+ |+..+.-+.++.|.-.
T Consensus 226 pEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 226 AEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 67899999998 6666787777777543
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.16 E-value=2.4e-05 Score=83.17 Aligned_cols=262 Identities=13% Similarity=0.104 Sum_probs=141.9
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEE-e-cCCCCCEEEEEE------------------CCCc
Q 004739 29 SKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAE 87 (732)
Q Consensus 29 ~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~-s-~~~~g~~l~s~~------------------~dg~ 87 (732)
+||++|..... ++.|.+.|+.+.++...+.-.....+..+++ + |+ +.+++.++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCce
Confidence 48888877664 5679999999999888552244456889988 4 78 47887774 2457
Q ss_pred EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---------------cEEEEECCCCCCC
Q 004739 88 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---------------TLRQHDFRQGSSC 152 (732)
Q Consensus 88 i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg---------------~i~vwd~~~~~~~ 152 (732)
+.+.|..+.+ .+..+.- ......++++|++ +++++.+.+. .|.+.|....+..
T Consensus 177 vtvID~~t~~----------v~~qI~V-gg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 177 FTAVDADKWE----------VAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EEEEETTTTE----------EEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEECCCCe----------EEEEEEe-CCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 8888888632 1333321 1245668899965 6665655442 3566665432210
Q ss_pred CCCCCCCcccceEEeeccC--Ccc--ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCC
Q 004739 153 PPAGSSHQECRNILLDLRC--GAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS 228 (732)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~ 228 (732)
........-....+++... +.. ..+.. .....++.++||+...++++..+.+|.++|+.+.+... .....
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv----g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~ 318 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENAD 318 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCC
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec----CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccC
Confidence 0000000001133445443 111 01110 11456799999944444555568999999998642110 00000
Q ss_pred CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECCCCCCcceeeecCCCCceeeecc-CCC-Cc
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP-TLN-GL 305 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 305 (732)
+..++.. .-..+.....++|+|+| ++++... |++|.+||+..... .+........+.-.+ .+. +|
T Consensus 319 ~~~~v~~--------~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~---~~~g~~~~~vi~kidV~yqpGh 386 (595)
T 1fwx_A 319 PRSAVVA--------EPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIR---AYAGEKVDPIKDKLDVHYQPGH 386 (595)
T ss_dssp GGGGEEE--------CCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHH---HHHTCSCCCEEEEEECSSCEEE
T ss_pred cccceEE--------EcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhh---hhcccccceeEEEeeccccccc
Confidence 0000000 00112237889999999 6666554 99999999877210 000000111111111 112 44
Q ss_pred cCCCCCCccCCCccccc
Q 004739 306 ELQPPIHDFLQTNIRVR 322 (732)
Q Consensus 306 ~~~~~~~~~~~~g~~~~ 322 (732)
........++|||+++.
T Consensus 387 ~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 387 LKTVMGETLDATNDWLV 403 (595)
T ss_dssp EEETTTTSTTCCSSEEE
T ss_pred ceeccceEeCCCCCEEE
Confidence 45556778899999887
No 240
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.15 E-value=0.003 Score=64.12 Aligned_cols=209 Identities=9% Similarity=0.042 Sum_probs=128.4
Q ss_pred CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
..+..++|++.+..|. +-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCce
Confidence 3467899997555444 4456788999998766544433 2333456789999864 45666666678899999874211
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.............+++.|.++.++++-... +.|...++...... . +
T Consensus 151 ----------~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------------~-----------~ 197 (349)
T 3v64_C 151 ----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------------I-----------I 197 (349)
T ss_dssp ----------EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------------E-----------S
T ss_pred ----------EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE------------E-----------E
Confidence 122223345678999999776777676655 77888887643211 0 0
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
. .........++++|+++.++++-...+.|..+|+..... ..+ . ..... ....+++.
T Consensus 198 ~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~-------------~------~~~~~-~P~giav~ 254 (349)
T 3v64_C 198 A--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------I------SQGLP-HPFAITVF 254 (349)
T ss_dssp C--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-------------E------CSSCS-SEEEEEEE
T ss_pred E--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEE-------------E------eCCCC-CceEEEEE
Confidence 0 011224688999987566666666778899999874321 111 0 00011 35677773
Q ss_pred CCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004739 258 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 287 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 287 (732)
++...++-...+.|..++..+++....+.
T Consensus 255 -~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 255 -EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp -TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 44445555567889999876666554443
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.13 E-value=0.00012 Score=75.10 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=121.4
Q ss_pred eeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeeEEEEccC-CC-cCeEEEEEecCCCCCEEEEEE----------
Q 004739 22 VNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETG-HS-ANVFCTKFVPETSDELVVSGA---------- 83 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~-h~-~~V~~~~~s~~~~g~~l~s~~---------- 83 (732)
-..+..+|+| +++++..+ +.|.+.|..+++.+.++..+ .. .--+.+.|+|+. +.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g 216 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDG 216 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccc
Confidence 3456788999 77776555 78999999999999988433 21 123458889994 7777774
Q ss_pred ---------CCCcEEEEEcCCCCCCCCCCCCCCCceeecc--ccCceeEEEE--ecCCCcEEEEEe-----CCCcEEEEE
Q 004739 84 ---------GDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHD 145 (732)
Q Consensus 84 ---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~--~p~~~~~l~s~s-----~dg~i~vwd 145 (732)
...+|.+||+.+.+ .+.++.- .......+.| +|++...++++. .+++|.+|.
T Consensus 217 ~~~~~~~~~~~d~V~v~D~~~~k----------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 217 LKLEHLKDRYGNRIHFWDLRKRK----------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp CCTTTHHHHSCCEEEEEETTTTE----------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred cchhhhhhccCCEEEEEECCCCc----------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence 37899999998632 1333332 1123455655 997655555555 677888877
Q ss_pred CCCCCCCCCCCCCCcccceEEeeccCCccc-cccCCC---C-CccceEEEEecCCCCCEEEEEeC-CCeEEEEECCCCCC
Q 004739 146 FRQGSSCPPAGSSHQECRNILLDLRCGAKR-SLADPP---K-QTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPP 219 (732)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~-~~~~v~~i~~~~~~~~~l~tg~~-dg~v~iwd~~~~~~ 219 (732)
...+.. .....+++...... .+...+ + .......|.++++ +++|.++.. .+.|.+||+.....
T Consensus 287 ~d~g~~----------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D-GrfLYVSnrg~d~VavfdV~d~~~ 355 (462)
T 2ece_A 287 YEDGKW----------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD-DKFLYLSLWGIGEVRQYDISNPFK 355 (462)
T ss_dssp EETTEE----------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT-SCEEEEEETTTTEEEEEECSSTTS
T ss_pred ecCCce----------eEEEEEeCCCccccccccccccccccCCCceeEEEECCC-CCEEEEEeCCCCEEEEEEecCCCC
Confidence 654220 01112222221100 000000 0 0124678999999 666666654 68999999863321
Q ss_pred Cc---ccccCCCCCCccccccccccccCCC-ccccEEEEEEcCCCCEEEEEe
Q 004739 220 LT---SCQKRMSPPPCVNYFCPMHLSEHGR-SSLHLTHVTFSPNGEEVLLSY 267 (732)
Q Consensus 220 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~~~~ 267 (732)
.. .+...... . .+.+. .|. -...-..++++|||++|+++.
T Consensus 356 ~~lv~~I~tGG~~----~--~~~~~--~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 356 PVLTGKVKLGGIF----H--RADHP--AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEEECBTTT----T--CBCCT--TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cEEEEEEEeCCee----c--ccccc--ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 11 11100000 0 00000 000 000245689999999999998
No 242
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.0016 Score=67.16 Aligned_cols=210 Identities=8% Similarity=0.041 Sum_probs=128.1
Q ss_pred CCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 19 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 19 ~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
...+..++|.+.+. ++++-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSCS
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCCc
Confidence 34567899997555 4445456788999998766544434 3333456788999864 4555666667888888876421
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
. ...+.........|++.|.++.++++-... +.|...++..... ..+..
T Consensus 193 ~----------~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~-------- 242 (386)
T 3v65_B 193 R----------KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD-------- 242 (386)
T ss_dssp C----------EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred e----------EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE--------
Confidence 1 122223345678999999776666665555 6788888754321 01110
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
........++++|+++.++++-+..+.|..+|+..... ..+ .. . ... ....+++
T Consensus 243 -----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~-------------~~-----~-~~~-~P~giav 296 (386)
T 3v65_B 243 -----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV-------------IS-----Q-GLP-HPFAITV 296 (386)
T ss_dssp -----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEE-------------EC-----S-SCS-SEEEEEE
T ss_pred -----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEE-------------EE-----C-CCC-CceEEEE
Confidence 01124678999987566666666778899999864321 111 00 0 011 3567777
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 287 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 287 (732)
..+..+++-...+.|..++..+++....+.
T Consensus 297 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 297 -FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 344555555667899999976766555444
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.05 E-value=0.0052 Score=70.33 Aligned_cols=213 Identities=10% Similarity=0.107 Sum_probs=120.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL 101 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~ 101 (732)
|.++...+++++.+ |..++.|..||..+++............|.++...++ |. |..++.++-|.+||..+......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~--g~-lwigt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP--TR-IWVATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEET--TE-EEEEEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC--CC-EEEEECCCCeEEEeCCCCeEEEe
Confidence 88888888887555 5555558999988776543321234567889888887 34 44455444488898875321100
Q ss_pred CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCC
Q 004739 102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP 181 (732)
Q Consensus 102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (732)
... ......-....|.++...+++ . |..|+.+ -|.+||..+.... ...... .....
T Consensus 251 ~~~---~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~---------------~~~~~~---~~~~~ 306 (795)
T 4a2l_A 251 LHS---PSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFA---------------SYSSNP---VENGS 306 (795)
T ss_dssp CCC---TTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEE---------------EECCCT---TSTTS
T ss_pred ecC---CCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEE---------------EEecCC---CCCCC
Confidence 000 000000113568999887744 4 4455555 5889997665311 000000 00001
Q ss_pred CCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCC
Q 004739 182 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE 261 (732)
Q Consensus 182 ~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~ 261 (732)
-....|.++...++ +. |..|+.++-|..|+..+.. ...+.. ... ..+-....|.++...++|.
T Consensus 307 l~~~~i~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~-~~~~~~-------------~~~-~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 307 LSQRSVRSIFMDSQ-GG-MWLGTYFGGLNYYHPIRNR-FKNIRN-------------IPY-KNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp CSSSCEEEEEECTT-SC-EEEEESSSCEEEECGGGGS-SEEECC-------------CTT-SSSCSCSSEEEEEECTTSC
T ss_pred CCCCcEEEEEEeCC-cC-EEEEECCCCeEEeCCCccc-ceEEcC-------------CCC-CCCCCCCeeEEEEECCCCC
Confidence 12246899999987 54 5667777789999876432 111100 000 0111122599999999987
Q ss_pred EEEEEecCCeEEEEECCCC
Q 004739 262 EVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 262 ~l~~~~~dg~v~iwd~~~~ 280 (732)
|.+|+.++-|..|+..++
T Consensus 370 -lWiGt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQ 387 (795)
T ss_dssp -EEEEESSSCEEEECTTTC
T ss_pred -EEEEECCCCeEEEcCCCC
Confidence 667888878999988764
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.04 E-value=3.3e-05 Score=82.09 Aligned_cols=183 Identities=6% Similarity=-0.043 Sum_probs=113.5
Q ss_pred hhccccEeeecc-CCceeEEEE-c-CCCCEEEEEe------------------CCCcEEEEeCCCCeeEEEEccCCCcCe
Q 004739 7 RRLSQERELEGH-QGCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKLLHSIETGHSANV 65 (732)
Q Consensus 7 ~~~~~~~~l~~h-~~~V~~l~~-s-~dg~~lasg~------------------~dg~i~vWd~~~~~~~~~~~~~h~~~V 65 (732)
.+++..++++-. ......+++ + |+++++++++ .++.+.+.|..+++.+.++..+- ..
T Consensus 120 ~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~p 197 (595)
T 1fwx_A 120 DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NL 197 (595)
T ss_dssp TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CC
T ss_pred CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--Cc
Confidence 345555544322 356788998 5 9999999884 34689999999999998884332 45
Q ss_pred EEEEEecCCCCCEEEEEECCC--------------------------------------cEEEEEcCCCCCCCCCCCCCC
Q 004739 66 FCTKFVPETSDELVVSGAGDA--------------------------------------EVRLFNLSRFSGRGLDDNAIT 107 (732)
Q Consensus 66 ~~~~~s~~~~g~~l~s~~~dg--------------------------------------~i~vwd~~~~~~~~~~~~~~~ 107 (732)
..++++|+ |+++++++.+. .|.|.|..+..+. .
T Consensus 198 d~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~-------~ 268 (595)
T 1fwx_A 198 DNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS-------L 268 (595)
T ss_dssp CCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC-------S
T ss_pred cceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc-------e
Confidence 67889998 58888877553 2444444431110 0
Q ss_pred CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004739 108 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 187 (732)
Q Consensus 108 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 187 (732)
.+..+. -.....++.++||+...++++..+.+|.++|+.+.+....-. . .........+. -....
T Consensus 269 ~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~-l-~~~~~v~~~v~------------vG~gP 333 (595)
T 1fwx_A 269 FTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-A-DPRSAVVAEPE------------LGLGP 333 (595)
T ss_dssp SEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC-C-CGGGGEEECCB------------CCSCE
T ss_pred eEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccc-c-CcccceEEEcC------------CCCCc
Confidence 022222 234567899999875566666678899999998642100000 0 00000111111 11246
Q ss_pred EEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 188 KSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 188 ~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
..++|+|+ |+..++...|+.|.+||+.+
T Consensus 334 ~h~aF~~d-G~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 334 LHTAFDGR-GNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEECTT-SEEEEEETTTTEEEEEEHHH
T ss_pred ceEEECCC-CeEEEEEecCCcEEEEEhhH
Confidence 78999999 56666777899999999876
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.04 E-value=0.0026 Score=72.90 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC-CcC-eEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 22 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-SAN-VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 22 V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h-~~~-V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
|.++...++|++.+.. . +.|.+||..+++..... ..+ ... |.++...++ |. |..+..++-|..|+..+....
T Consensus 133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~-~~~~~~~~i~~i~~d~~--g~-lwigt~~~Gl~~~~~~~~~~~ 206 (795)
T 4a2l_A 133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDS-FSTAMHKTIASTLYRQG--DQ-IYIGTSTDGLYTYSITQKTFE 206 (795)
T ss_dssp CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSS-SCHHHHTCCEEEEEEET--TE-EEEEESSSCEEEEETTTCCEE
T ss_pred EEEEEECCCCCEEEEE-C-CceEEEECCCCEEEecc-CCCCCCcceEEEEECCC--CC-EEEEECCCCEEEEeCCCCeEE
Confidence 8889888888766644 3 45899998776543221 111 123 888888887 34 444666555888987753211
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. .. .......|.++...+++ . |..++.++.|.+||..+.+.. .+...... .
T Consensus 207 ~--------~~-~~~~~~~i~~i~~d~~g-~-lwigt~~~Gl~~~~~~~~~~~-------------~~~~~~~~-----~ 257 (795)
T 4a2l_A 207 K--------VI-PILGTKQIQAILQQSPT-R-IWVATEGAGLFLINPKTKEIK-------------NYLHSPSN-----P 257 (795)
T ss_dssp E--------CC-----CCCEEEEEEEETT-E-EEEEEBSSCEEEEETTTTEEE-------------EECCCTTC-----T
T ss_pred E--------ec-CCCCCCeeEEEEEcCCC-C-EEEEECCCCeEEEeCCCCeEE-------------EeecCCCC-----c
Confidence 0 00 01134568888877743 4 445555545889998665311 00000000 0
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
.......|.++...++ +. |..|+.+ .|.+||..+... ..+... ......-....|.++...++
T Consensus 258 ~~l~~~~i~~i~~d~~-g~-lWigt~~-Gl~~~~~~~~~~-~~~~~~-------------~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 258 KSISSNYIRSLAMDSQ-NR-LWIGTFN-DLNIYHEGTDSF-ASYSSN-------------PVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp TSCSCSBEEEEEECTT-SC-EEEEESS-CEEEEETTTTEE-EEECCC-------------TTSTTSCSSSCEEEEEECTT
T ss_pred cccCCCeEEEEEEcCC-CC-EEEEeCC-hhheEcCCCCeE-EEEecC-------------CCCCCCCCCCcEEEEEEeCC
Confidence 0012236899999887 54 4445555 588999875431 111000 00001111225999999999
Q ss_pred CCEEEEEecCCeEEEEECCC
Q 004739 260 GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 260 g~~l~~~~~dg~v~iwd~~~ 279 (732)
|. |.+|+.++-|..|+..+
T Consensus 321 g~-lWigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 321 GG-MWLGTYFGGLNYYHPIR 339 (795)
T ss_dssp SC-EEEEESSSCEEEECGGG
T ss_pred cC-EEEEECCCCeEEeCCCc
Confidence 97 67788878888898765
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.02 E-value=0.00059 Score=76.08 Aligned_cols=65 Identities=6% Similarity=-0.010 Sum_probs=51.4
Q ss_pred EecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccCC
Q 004739 613 SGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGG 678 (732)
Q Consensus 613 sgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~g 678 (732)
....+|.|..||..||+.+.+...+. .+....+...+.+++.++.|+.|++||.++++.+..+.-
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 44567999999999999998877543 334445556688888999999999999999998876643
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.02 E-value=0.00081 Score=65.50 Aligned_cols=190 Identities=7% Similarity=0.035 Sum_probs=113.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeE----EEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCC
Q 004739 32 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT 107 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~~~~~~----~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 107 (732)
.+|..+.. +.|+.+++...... ..+.......+.+++|+++. +.++++-..++.|..+++.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~--------- 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGEP--------- 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCCC---------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCCc---------
Confidence 34554443 47888887754321 11111123457899999974 34555555678999999874321
Q ss_pred CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccce
Q 004739 108 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 187 (732)
Q Consensus 108 ~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 187 (732)
.............+++.|+++.++++-...+.|.++++..... ..+.. ......
T Consensus 71 -~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P 124 (267)
T 1npe_A 71 -TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFD-------------TGLVNP 124 (267)
T ss_dssp -EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSE
T ss_pred -EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEE-------------CCCCCc
Confidence 1122222246789999997667777777778999999864321 01110 001245
Q ss_pred EEEEecCCCCCEEEEEeC--CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004739 188 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 265 (732)
Q Consensus 188 ~~i~~~~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~ 265 (732)
..++++|+++.++++... .+.|..+++.... ...+ . ..... ....++++|++..|+.
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~-------------~------~~~~~-~P~gia~d~~~~~lyv 183 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRIL-------------A------QDNLG-LPNGLTFDAFSSQLCW 183 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEE-------------E------CTTCS-CEEEEEEETTTTEEEE
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEE-------------E------ECCCC-CCcEEEEcCCCCEEEE
Confidence 789999974555555433 4688888876422 1111 0 00011 3788999998877766
Q ss_pred Eec-CCeEEEEECCC
Q 004739 266 SYS-GEHVYLMDVNH 279 (732)
Q Consensus 266 ~~~-dg~v~iwd~~~ 279 (732)
+.. .+.|.++++..
T Consensus 184 ~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 184 VDAGTHRAECLNPAQ 198 (267)
T ss_dssp EETTTTEEEEEETTE
T ss_pred EECCCCEEEEEecCC
Confidence 655 68999999875
No 248
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.94 E-value=8.1e-07 Score=91.72 Aligned_cols=146 Identities=8% Similarity=0.049 Sum_probs=78.6
Q ss_pred cCCCCCCCCcccccccc-cCCcceeeccCCCCccccccCCCCCCCCCCCCCCCCCccccccccccceeEeeeccccceee
Q 004739 521 HTSVPGDEGRDVEANFL-HGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIK 599 (732)
Q Consensus 521 ~~~~s~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~ 599 (732)
..+.+++.|+.+..|+. +|+..-++.. ..+.+..+.++++.++.++.++....|+..+ ++.+.++..+.... +.
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~--~~ 84 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPEL--VQ 84 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHH--HT
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccc--cc
Confidence 45667778888999996 6888777765 5667777778888877765455555577755 55555555443221 11
Q ss_pred ecccccCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCcccc
Q 004739 600 QASFLGQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVS 676 (732)
Q Consensus 600 ~~~f~s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~ 676 (732)
...+++ ++..|++|+.|+.|+.||.++|+++.++..|. .+.++|++..|++++.|+.|+.||.++++....+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 111112 45678889999999999999999999888765 2467788889999999999999999999987654
No 249
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.92 E-value=0.0087 Score=59.76 Aligned_cols=211 Identities=7% Similarity=-0.030 Sum_probs=123.7
Q ss_pred CCceeEEEEcCCCCEE-EEEeCCCcEEEEeCCC---CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 19 QGCVNAISWNSKGSLL-ISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~---~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
-....+++|++++..| ++-...+.|..+++.. +.....+....-.....+++.+.. ++++++-...+.|.+.++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCC
Confidence 3456789999866544 4545678999999876 122222212223456889998753 3555665678899999987
Q ss_pred CCCCCCCCCCCCCCcee-eccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 95 RFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
... ... ..........+++.|.++.++++-... +.|...++..... ..+..
T Consensus 108 g~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------~~~~~---- 160 (316)
T 1ijq_A 108 GVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT---- 160 (316)
T ss_dssp SSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC----
T ss_pred CCc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------EEEEE----
Confidence 421 122 222335678999999776666665443 6788887743220 01110
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
........++++++++.++++-...+.|..+|+.... ...+. .. ..... ...
T Consensus 161 ---------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~-------------~~----~~~~~-~P~ 212 (316)
T 1ijq_A 161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTIL-------------ED----EKRLA-HPF 212 (316)
T ss_dssp ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------------EC----TTTTS-SEE
T ss_pred ---------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEe-------------ec----CCccC-CcE
Confidence 0112567899999856556666667899999987432 11110 00 00001 256
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 286 (732)
.+++. .+..+++-...+.|..++..+++....+
T Consensus 213 giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 213 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 67775 3555555556789999998776654443
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.91 E-value=0.0061 Score=61.85 Aligned_cols=200 Identities=9% Similarity=0.025 Sum_probs=123.7
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
.+..+|.+..+++.+++ +. ...|+..++........+ . ....+..++|++.. +.++++-...+.|..+++.....
T Consensus 33 ~d~~~C~~~~~~~~ll~-~~-~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 33 PDRRSCKALGPEPVLLF-AN-RIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TTSSCEEESSSCCEEEE-EC-BSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCcccccccCceeEe-ec-ccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCCc
Confidence 44556766666443343 33 356888888765554433 3 33457899999874 34555555678899998875321
Q ss_pred CCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 99 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
.............+++.+.+++++++-...+.|.+.++..... ..+..
T Consensus 108 ----------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~---------- 155 (349)
T 3v64_C 108 ----------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW---------- 155 (349)
T ss_dssp ----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC----------
T ss_pred ----------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe----------
Confidence 1112222345678999886767777777778899999864431 01110
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
........++++|.++.++++-... +.|..+++...... .+ . . ..-...+.|+++
T Consensus 156 ---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-------------~------~-~~~~~PnGla~d 211 (349)
T 3v64_C 156 ---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-------------A------D-THLFWPNGLTID 211 (349)
T ss_dssp ---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ES-------------C------C-SSCSCEEEEEEE
T ss_pred ---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EE-------------E------E-CCCCCcceEEEe
Confidence 1112457899999756666666555 78998888743211 11 0 0 001137889999
Q ss_pred CCCCEEEEEec-CCeEEEEECCC
Q 004739 258 PNGEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 258 p~g~~l~~~~~-dg~v~iwd~~~ 279 (732)
|++..|+.+.. .+.|..+++..
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCEEEEEECCCCEEEEEeCCC
Confidence 97777777654 67899999875
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.80 E-value=0.0026 Score=70.88 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=38.7
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEEecCcccE-EEEeecCCCC-eEEEec
Q 004739 605 GQRGDYIASGSDDGRWFIWEKQTGRLIKMLLGDEAVV-NCVQCHPFDC-VVATSG 657 (732)
Q Consensus 605 s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~gH~~~V-~~v~fsp~~~-~l~S~s 657 (732)
...|.+|+.|+.|+.+++||.++|+.+..++...... .-+.+..+|+ +++.++
T Consensus 466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 3467889999999999999999999999997654221 2334456676 555554
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.79 E-value=0.001 Score=63.84 Aligned_cols=174 Identities=13% Similarity=0.069 Sum_probs=101.2
Q ss_pred CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC--CCcEEEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecC
Q 004739 51 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVG 127 (732)
Q Consensus 51 ~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~ 127 (732)
.+.+.++..+.......+.|+|+ +.++++.+. ++.|.+.|+.+++- +..+. +.......+++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg~v----------~~~i~l~~~~fgeGi~~~-- 74 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTGKV----------ENIHKMDDSYFGEGLTLL-- 74 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTCCE----------EEEEECCTTCCEEEEEEE--
T ss_pred ceEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCCCE----------EEEEecCCCcceEEEEEe--
Confidence 35566663222234689999997 355555543 67999999997532 23322 111122345554
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004739 128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 207 (732)
Q Consensus 128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg 207 (732)
+..++++.-.++.+.++|..+.+.. -.+..+ .. . ...+++++. .++++..++
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~--------------~~i~~g--------~~---~--g~glt~Dg~-~l~vs~gs~ 126 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNI--------------KNFTHQ--------MK---D--GWGLATDGK-ILYGSDGTS 126 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEE--------------EEEECC--------SS---S--CCEEEECSS-SEEEECSSS
T ss_pred CCEEEEEEecCCEEEEEECCCCcEE--------------EEEECC--------CC---C--eEEEEECCC-EEEEECCCC
Confidence 4466666667889999999887622 111100 00 1 122445634 455555688
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCCCcc
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~ 284 (732)
.|.++|..+.+.+..+.... .+..-..++.+.|. +|+ |++.. .++.|.+.|..+++...
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLG 186 (266)
T ss_dssp EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEE
Confidence 99999999877655442110 01111126778888 675 55554 57899999999976433
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.76 E-value=0.0021 Score=60.95 Aligned_cols=172 Identities=8% Similarity=-0.011 Sum_probs=104.4
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcE
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 131 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 131 (732)
+.+.++...-..-...+.|+.+ .++++.+.+|.|+++|+++++- +... -..........+.+.++
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~---~Ly~stG~~g~v~~iD~~Tgkv----------~~~~--l~~~~FgeGit~~g~~L 108 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQG---HFFESTGHQGTLRQLSLESAQP----------VWME--RLGNIFAEGLASDGERL 108 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETT---EEEEEETTTTEEEECCSSCSSC----------SEEE--ECTTCCEEEEEECSSCE
T ss_pred EEEEEEcCCCccccceEEEECC---EEEEEcCCCCEEEEEECCCCcE----------EeEE--CCCCcceeEEEEeCCEE
Confidence 4556663222334578999853 7888888899999999997532 2333 12233332233345577
Q ss_pred EEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004739 132 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 211 (732)
Q Consensus 132 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i 211 (732)
++..-.++.+.+||..+.+.. - .+.. ... -..++ ++ +..|+.+..++.|++
T Consensus 109 y~ltw~~~~v~V~D~~Tl~~~--------------~--------ti~~-~~e---GwGLt--~D-g~~L~vSdGs~~l~~ 159 (268)
T 3nok_A 109 YQLTWTEGLLFTWSGMPPQRE--------------R--------TTRY-SGE---GWGLC--YW-NGKLVRSDGGTMLTF 159 (268)
T ss_dssp EEEESSSCEEEEEETTTTEEE--------------E--------EEEC-SSC---CCCEE--EE-TTEEEEECSSSEEEE
T ss_pred EEEEccCCEEEEEECCcCcEE--------------E--------EEeC-CCc---eeEEe--cC-CCEEEEECCCCEEEE
Confidence 777777899999999887632 0 0110 011 12333 44 456666667899999
Q ss_pred EECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 212 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
+|..+.+.+.++.... .+..-..++.+.|. +|+..+....++.|.+.|.++++...
T Consensus 160 iDp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 160 HEPDGFALVGAVQVKL----------------RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp ECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred EcCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence 9999987665542110 11111136777877 77544444458899999999976433
No 254
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.74 E-value=0.026 Score=58.38 Aligned_cols=213 Identities=8% Similarity=-0.020 Sum_probs=125.4
Q ss_pred cCCceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 18 HQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 18 h~~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
....+..++|++.+..|. +-...+.|+.+++... .....+ .........+++.+.. ++++++-...+.|.+.+
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEC
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecC-CceEEEECCCCeEEEEe
Confidence 345778999998655554 4446688999988652 222223 3344567899999853 45666656678899998
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCCCCCCCCCCcccceEEeeccC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 171 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (732)
+..... ...+.........|++.|.++.++++-.. .+.|...++..... ..+..
T Consensus 188 ~~g~~~----------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~~~~--- 242 (400)
T 3p5b_L 188 TKGVKR----------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT--- 242 (400)
T ss_dssp TTTCSE----------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------EEEEC---
T ss_pred CCCCce----------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------EEEEE---
Confidence 874211 12222234557899999976666665433 36788888754331 01110
Q ss_pred CccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccE
Q 004739 172 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 251 (732)
Q Consensus 172 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 251 (732)
........|+++++++.++++-...+.|..+|+..... ..+. .. .+... ..
T Consensus 243 ----------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~-------------~~----~~~l~-~P 293 (400)
T 3p5b_L 243 ----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-------------ED----EKRLA-HP 293 (400)
T ss_dssp ----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEE-------------EC----SSTTS-SE
T ss_pred ----------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEE-------------eC----CCCCC-CC
Confidence 11125688999988565555556678899999875321 1110 00 00111 24
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCCCcceee
Q 004739 252 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY 287 (732)
Q Consensus 252 ~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 287 (732)
..+++. .+.++++-...+.|..+|..+++....+.
T Consensus 294 ~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 294 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 567763 33445555567899999987776555443
No 255
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.73 E-value=0.0055 Score=63.16 Aligned_cols=198 Identities=8% Similarity=0.024 Sum_probs=119.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
.-+|.+..+.+ +|+.+ ....|+..++........+ . ....+..++|++.. +.++++-...+.|..+++.....
T Consensus 78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~~-- 150 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSNV-- 150 (386)
T ss_dssp SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCE--
T ss_pred CCeECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCCc--
Confidence 34455555533 34433 3357888998776554444 2 33457899999864 34555555678899999875321
Q ss_pred CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004739 101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180 (732)
Q Consensus 101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (732)
.............+++.+.+++++++-...+.|.+.++..... ..+..
T Consensus 151 --------~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~------------ 198 (386)
T 3v65_B 151 --------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW------------ 198 (386)
T ss_dssp --------EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC------------
T ss_pred --------EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec------------
Confidence 1112222234577889886767777777777888888754321 11110
Q ss_pred CCCccceEEEEecCCCCCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
........++++|.++.++++-... +.|..+++...... .+ . ... -...+.|+|+|+
T Consensus 199 -~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-------------~------~~~-~~~PnGlavd~~ 256 (386)
T 3v65_B 199 -QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-------------A------DTH-LFWPNGLTIDYA 256 (386)
T ss_dssp -SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-------------E------CSS-CSCEEEEEEEGG
T ss_pred -CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EE-------------E------ECC-CCCeeeEEEeCC
Confidence 1112457899999856566665555 78888888643211 11 0 000 113688999987
Q ss_pred CCEEEEEec-CCeEEEEECCC
Q 004739 260 GEEVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 260 g~~l~~~~~-dg~v~iwd~~~ 279 (732)
+..|+.+.. .+.|..+++..
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 257 GRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp GTEEEEEETTTTEEEEECTTS
T ss_pred CCEEEEEECCCCEEEEEeCCC
Confidence 777776654 67899999875
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.73 E-value=0.0035 Score=62.37 Aligned_cols=208 Identities=9% Similarity=0.008 Sum_probs=115.2
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS 97 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~ 97 (732)
.....++|+++|+++++-..++.|..||.... ....+ .....+.++++.++ |+++++..... .|..+|..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCCcceEEEEcCCCCe
Confidence 56778999999997777767899999997754 33333 22346889999998 46666554333 35566655432
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
.. .+.... .......++..+ ++..+++-..++.|.++|...+.. .++... +... .
T Consensus 107 ~~--------~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~-------------~v~~~~-~~~~-~ 161 (306)
T 2p4o_A 107 VE--------TLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG-------------SIWLEH-PMLA-R 161 (306)
T ss_dssp EE--------EEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE-------------EEEEEC-GGGS-C
T ss_pred EE--------EEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE-------------eEEEEC-Cccc-c
Confidence 10 011111 122234555544 435555555678888888764320 000000 0000 0
Q ss_pred cCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEc
Q 004739 178 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS 257 (732)
Q Consensus 178 ~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 257 (732)
............+ +++++.++++-...+.|..||+.....+... ..+. .. . ....++++
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~----------~~~~------~~--~-~P~gi~vd 220 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP----------EIFV------EQ--T-NIDDFAFD 220 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC----------EEEE------ES--C-CCSSEEEB
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc----------EEEe------cc--C-CCCCeEEC
Confidence 0001111133445 6774445566666789999998752111100 0000 00 0 24558999
Q ss_pred CCCCEEEEEecCCeEEEEECC
Q 004739 258 PNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 258 p~g~~l~~~~~dg~v~iwd~~ 278 (732)
++|++.++....+.|.+++..
T Consensus 221 ~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 221 VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTCCEEEECBTTCCEEEECTT
T ss_pred CCCCEEEEeCCCCeEEEECCC
Confidence 999876666667899999865
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.72 E-value=0.0027 Score=63.76 Aligned_cols=201 Identities=10% Similarity=0.029 Sum_probs=112.4
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEE--ccC-CCcCeEEEEEec-CCCCCEEEEEEC-----------
Q 004739 21 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI--ETG-HSANVFCTKFVP-ETSDELVVSGAG----------- 84 (732)
Q Consensus 21 ~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~--~~~-h~~~V~~~~~s~-~~~g~~l~s~~~----------- 84 (732)
.+..+++.+ +|++++ +...+.|..+|..+++..... ..+ .......+++.+ + |.++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCC--CEEEEECCccccccccccee
Confidence 578899998 665544 444455888997766432211 011 113468899999 7 466666432
Q ss_pred ------CCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCC
Q 004739 85 ------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS 158 (732)
Q Consensus 85 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 158 (732)
++.|..||..+.. +..+.......+.|+++|++..++++-...+.|.+|++......
T Consensus 158 ~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~------ 220 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG------ 220 (322)
T ss_dssp HHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT------
T ss_pred hcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC------
Confidence 3668888876422 12222223446789999966335555566788999998753210
Q ss_pred CcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeC----------CCeEEEEECCCCCCCcccccCCC
Q 004739 159 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMS 228 (732)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~ 228 (732)
....+. ..+ . ...++++++ |+++++... .+.|..+|.. ++.+..+...
T Consensus 221 ---~~~~~~-----------~~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~-- 278 (322)
T 2fp8_A 221 ---TAEVLV-----------KIP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP-- 278 (322)
T ss_dssp ---CEEEEE-----------ECS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--
T ss_pred ---ccceEE-----------eCC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--
Confidence 000111 111 1 567899998 666666544 4668888864 4333222110
Q ss_pred CCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 229 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.+..-..++.+++ .++++.++....+.|..+++..
T Consensus 279 ---------------~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 279 ---------------PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ---------------TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ---------------CCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 1110113556666 3555444445678999999875
No 258
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.71 E-value=0.014 Score=58.10 Aligned_cols=208 Identities=9% Similarity=0.057 Sum_probs=124.1
Q ss_pred ceeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 21 CVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 21 ~V~~l~~s~dg-~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
.+.+++|.+.+ .++.+-...+.|..+++........+....-.....+++.+.. +.++++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~~- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSLR- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCcE-
Confidence 46688999854 4555555678899999876632211112222456789998764 45666666678899999874211
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
.............+++.|.++.++++-. ..+.|...++..... ..+..
T Consensus 114 ---------~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~---------- 162 (318)
T 3sov_A 114 ---------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN---------- 162 (318)
T ss_dssp ---------EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC----------
T ss_pred ---------EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE----------
Confidence 1112233456789999986656665542 356788887754321 01110
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
........++++++++.++++-+..+.|..+|+.... ...+ . .+... ....+++..
T Consensus 163 ---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~-------------~------~~~~~-~P~glav~~ 218 (318)
T 3sov_A 163 ---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAV-------------V------KGSLP-HPFALTLFE 218 (318)
T ss_dssp ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------------E------CSCCS-CEEEEEEET
T ss_pred ---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEE-------------e------cCCCC-CceEEEEeC
Confidence 0112457899999756666666677899999987432 1111 0 00111 256677753
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCccee
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 286 (732)
+..+++-...+.|..++..+++....+
T Consensus 219 -~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 219 -DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp -TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred -CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 344455555789999999877654443
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.68 E-value=0.0027 Score=60.17 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=100.7
Q ss_pred eeEEEEccCCCcC--eEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC
Q 004739 52 KLLHSIETGHSAN--VFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 127 (732)
Q Consensus 52 ~~~~~~~~~h~~~--V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~ 127 (732)
+.+.++ .|... ...+.|+ + +.++.+.+.+| .|+++|+.+++- +....- ..........+.
T Consensus 32 ~vv~~~--phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tgkv----------~~~~~l-~~~~FgeGit~~ 95 (262)
T 3nol_A 32 QIVHSY--PHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESGKT----------LQQIEL-GKRYFGEGISDW 95 (262)
T ss_dssp EEEEEE--ECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTCCE----------EEEEEC-CTTCCEEEEEEE
T ss_pred EEEEEe--cCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCCcE----------EEEEec-CCccceeEEEEe
Confidence 455566 45433 4889998 4 47777777766 899999997532 233321 223333333333
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCC
Q 004739 128 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA 207 (732)
Q Consensus 128 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg 207 (732)
+.++++..-.++.+.++|..+.+... .+.. .. ....++++ +..|+.+..++
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~----------------------ti~~-~~-----eG~glt~d-g~~L~~SdGs~ 146 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVR----------------------SFNY-DG-----EGWGLTHN-DQYLIMSDGTP 146 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEE----------------------EEEC-SS-----CCCCEEEC-SSCEEECCSSS
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEE----------------------EEEC-CC-----CceEEecC-CCEEEEECCCC
Confidence 54666666678899999998877320 0110 01 11122345 34555555578
Q ss_pred eEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 208 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 208 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
.|.++|..+.+.+..+.... .+..-..++.+.|. +|+..+....++.|.+.|.++++...
T Consensus 147 ~i~~iDp~T~~v~~~I~V~~----------------~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 147 VLRFLDPESLTPVRTITVTA----------------HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTG 206 (262)
T ss_dssp EEEEECTTTCSEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred eEEEEcCCCCeEEEEEEecc----------------CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEE
Confidence 89999999887665542110 11111135667776 67644444458899999999976443
No 260
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.64 E-value=0.0052 Score=63.19 Aligned_cols=188 Identities=9% Similarity=0.089 Sum_probs=110.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCc
Q 004739 30 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS 109 (732)
Q Consensus 30 dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 109 (732)
++..++.++.++.|..+|..+++.+.++. ............ + ..++.++.++.|..+|..+++. +
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~p~~~-~---~~v~v~~~~g~l~~~d~~tG~~----------~ 166 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTK-VAGEALSRPVVS-D---GLVLIHTSNGQLQALNEADGAV----------K 166 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEE-CSSCCCSCCEEE-T---TEEEEECTTSEEEEEETTTCCE----------E
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEe-CCCceEcCCEEE-C---CEEEEEcCCCeEEEEECCCCcE----------E
Confidence 35577778889999999999999887762 222211111222 3 5788888899999999987532 2
Q ss_pred eeeccccCce-----eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc---ccCC-
Q 004739 110 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS---LADP- 180 (732)
Q Consensus 110 ~~~~~h~~~v-----~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 180 (732)
.......... ...... + ..++.++.++.|..+|..+++. +|......... +...
T Consensus 167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~--------------~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQM--------------IWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCE--------------EEEEECCC-----------
T ss_pred EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcE--------------EEEEecccCCCCccccccc
Confidence 2222111100 112222 3 4566788889999999988762 23221110000 0000
Q ss_pred CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g 260 (732)
.....++ .. +..+++++.++.+..+|.++++.+-... .. ....+.. ++
T Consensus 230 ~~~~~p~----~~---~~~v~~~~~~g~l~~~d~~tG~~~w~~~----------------------~~-~~~~~~~--~~ 277 (376)
T 3q7m_A 230 DVDTTPV----VV---NGVVFALAYNGNLTALDLRSGQIMWKRE----------------------LG-SVNDFIV--DG 277 (376)
T ss_dssp CCCCCCE----EE---TTEEEEECTTSCEEEEETTTCCEEEEEC----------------------CC-CEEEEEE--ET
T ss_pred ccCCCcE----EE---CCEEEEEecCcEEEEEECCCCcEEeecc----------------------CC-CCCCceE--EC
Confidence 0000111 11 3478888889999999999886543221 00 1333333 35
Q ss_pred CEEEEEecCCeEEEEECCCCC
Q 004739 261 EEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 261 ~~l~~~~~dg~v~iwd~~~~~ 281 (732)
..|++++.++.|..+|..+++
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCC
T ss_pred CEEEEEcCCCeEEEEECCCCc
Confidence 678889999999999998864
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.63 E-value=0.0026 Score=72.09 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=70.6
Q ss_pred ceeEEEEc-CCCCEEEEEeC-C----CcEEEEeCCCC-eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcE
Q 004739 21 CVNAISWN-SKGSLLISGSD-D----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEV 88 (732)
Q Consensus 21 ~V~~l~~s-~dg~~lasg~~-d----g~i~vWd~~~~-~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i 88 (732)
.+...+|| |||++||-+.. + .+|+++|+.++ +.+... -......+.|+|++ +.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspDg--~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPDH--TSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSST--TEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecCC--CEEEEEEECCCCCCCEE
Confidence 67889999 99998885532 2 25999999998 633211 11224578899994 666666554 257
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEeC--CCcEEEEECCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG 149 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s~--dg~i~vwd~~~~ 149 (732)
.++++.+..... ...+. ........+.|+|++..++++... ...|.++|+.++
T Consensus 250 ~~~~lgt~~~~~--------~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSED--------VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGC--------EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhc--------EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 777776532111 12222 222345678999976434444432 335778888765
No 262
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.60 E-value=0.0035 Score=62.92 Aligned_cols=204 Identities=9% Similarity=0.029 Sum_probs=116.0
Q ss_pred eccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccC-------------------CCcCeEEEEEecCCCC
Q 004739 16 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------------------HSANVFCTKFVPETSD 76 (732)
Q Consensus 16 ~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~-------------------h~~~V~~~~~s~~~~g 76 (732)
.+.-....+++|.++|+++.++..++.|..||..+++... +... ....+.++++.++.
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-- 91 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-- 91 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT--
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCC--
Confidence 3333456788999999988888889999999987654332 2110 11357899999832
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce-eecc-ccCceeEEEEec-CCCcEEEEEeC----------------
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQC-HTRRVKKLAVEV-GNPHVVWSASE---------------- 137 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~-h~~~v~~l~~~p-~~~~~l~s~s~---------------- 137 (732)
..|+.+...+.|..+|..++.... +. ...+ .....+.+++.+ ++ +++++-..
T Consensus 92 g~l~v~d~~~~i~~~d~~~g~~~~--------~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 92 NQLYIVDCYYHLSVVGSEGGHATQ--------LATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp TEEEEEETTTEEEEECTTCEECEE--------EESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTC
T ss_pred CcEEEEECCCCEEEEeCCCCEEEE--------ecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccC
Confidence 345555555558888876421100 11 0111 113467788888 55 55555322
Q ss_pred -CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEE-EEeCCCeEEEEECC
Q 004739 138 -DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRR 215 (732)
Q Consensus 138 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-tg~~dg~v~iwd~~ 215 (732)
++.|..||..+++.. .+.. .......++++|+ ++.|+ +-..++.|.+|++.
T Consensus 163 ~~g~v~~~d~~~~~~~------------~~~~--------------~~~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETT------------LLLK--------------ELHVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp CCEEEEEEETTTTEEE------------EEEE--------------EESCCCEEEECTT-SSEEEEEEGGGTEEEEEESS
T ss_pred CCceEEEEeCCCCEEE------------Eecc--------------CCccCcceEECCC-CCEEEEEeCCCCeEEEEECC
Confidence 245666665543210 0000 0113457899998 56554 44667899999987
Q ss_pred CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec----------CCeEEEEECC
Q 004739 216 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN 278 (732)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~----------dg~v~iwd~~ 278 (732)
... .... ..+. .. . . ...++++++|++.++... .+.|..+|..
T Consensus 216 ~~~-~~~~----------~~~~--~~--~----g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 216 GPK-KGTA----------EVLV--KI--P----N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp STT-TTCE----------EEEE--EC--S----S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CCc-CCcc----------ceEE--eC--C----C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 532 1100 0110 00 1 1 567899999986666544 3567777754
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.064 Score=61.11 Aligned_cols=216 Identities=8% Similarity=0.052 Sum_probs=119.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEcc------CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~------~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
..|.++...++|.+.+. ..+ -+.+||..+++....... .....|.++...++ ..|..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~---g~lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKD---NKLWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTT---SEEEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCC---CCEEEEeCCCCeEEECC
Confidence 56889998888886664 444 589999877654432211 12356899988877 35556666456888888
Q ss_pred CCCCCCCCCCCCCC----CceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 94 SRFSGRGLDDNAIT----PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 94 ~~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
.+..-......... ......-....|.++...+++ .|..|+.++-|..++....... .+..
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-------------~~~~ 350 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH-------------TWSY 350 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE-------------EEC-
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce-------------eecc
Confidence 75321110000000 000001124568888887744 3556777778999987655311 0000
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccc
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
.... ..........|.++...++ +. |..|+.++-|..||..+.... .+ ... ......
T Consensus 351 ~~~~---~~~~~l~~~~v~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~-~~-------------~~~----~~~~~~ 407 (781)
T 3v9f_A 351 SPTQ---MNESSLSNKVVSSVCDDGQ-GK-LWIGTDGGGINVFENGKRVAI-YN-------------KEN----RELLSN 407 (781)
T ss_dssp ---C---CCSSCCSSSCEEEEEECTT-SC-EEEEEBSSCEEEEETTEEEEE-CC----------------------CCCS
T ss_pred Cccc---cccCCCCCcceEEEEEcCC-CC-EEEEeCCCcEEEEECCCCeEE-Ec-------------cCC----CCCCCc
Confidence 0000 0000012236888888876 44 556676667899998653211 00 000 011112
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 250 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 250 ~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
.|.++...++|. |.+|+.++-|..++..+
T Consensus 408 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 408 SVLCSLKDSEGN-LWFGTYLGNISYYNTRL 436 (781)
T ss_dssp BEEEEEECTTSC-EEEEETTEEEEEECSSS
T ss_pred ceEEEEECCCCC-EEEEeccCCEEEEcCCC
Confidence 599999988887 55677777788888766
No 264
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.55 E-value=0.00093 Score=67.26 Aligned_cols=176 Identities=9% Similarity=0.042 Sum_probs=106.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA 110 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 110 (732)
+..|..++.++.|..+|.. ++..... ......+.++...++ ..+..++.++.|..+|.. +. .+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~---g~l~vgt~~~~l~~~d~~-g~----------~~~ 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED---GTIYVGSNDNYLYAINPD-GT----------EKW 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT---SCEEEECTTSEEEEECTT-SC----------EEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC---CEEEEEcCCCEEEEECCC-CC----------EeE
Confidence 4457778888999999988 7776666 344555666767666 346667778999999987 32 133
Q ss_pred eeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEE
Q 004739 111 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC 190 (732)
Q Consensus 111 ~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 190 (732)
.+......+.++...+++ .++ .++ +.|..+| .+++. ++.... ....+.++
T Consensus 171 ~~~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~~--------------~~~~~~-----------~~~~~~~~ 220 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDGTE--------------KWNFYA-----------GYWTVTRP 220 (330)
T ss_dssp EEECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTSCE--------------EEEECC-----------SSCCCSCC
T ss_pred EEecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCCcE--------------EEEEcc-----------CCcceece
Confidence 333334556667776633 444 444 7899999 55441 121111 11245666
Q ss_pred EecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCC
Q 004739 191 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE 270 (732)
Q Consensus 191 ~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg 270 (732)
...++ + .|..++.++.|..+|. +++.+..+.. ... .+.++.+.+++. |++++.+|
T Consensus 221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~~--------------------~~~-~~~~~~~~~~g~-l~v~t~~g 275 (330)
T 3hxj_A 221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFKT--------------------GKR-IESSPVIGNTDT-IYFGSYDG 275 (330)
T ss_dssp EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEEC--------------------SSC-CCSCCEECTTSC-EEEECTTC
T ss_pred EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEeeC--------------------CCC-ccccceEcCCCe-EEEecCCC
Confidence 77776 4 4666777888888875 3332221110 000 122345566664 77888898
Q ss_pred eEEEEEC
Q 004739 271 HVYLMDV 277 (732)
Q Consensus 271 ~v~iwd~ 277 (732)
.|..+|.
T Consensus 276 gl~~~d~ 282 (330)
T 3hxj_A 276 HLYAINP 282 (330)
T ss_dssp EEEEECT
T ss_pred CEEEECC
Confidence 9999985
No 265
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.54 E-value=0.037 Score=62.25 Aligned_cols=211 Identities=8% Similarity=-0.022 Sum_probs=124.0
Q ss_pred cCCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC----eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 18 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 18 h~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~----~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
....+.+|+|.+... ++++-...+.|+.+++... .....+ .........|++.+.+ ++++++-...+.|.+.+
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEe
Confidence 345677899998544 4455556678988888753 222223 3344567789999874 35566666778999999
Q ss_pred cCCCCCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeecc
Q 004739 93 LSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR 170 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (732)
+.... ...+ .........|++.|.++.++++-... +.|...++..... ..+..
T Consensus 500 ldG~~-----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~-- 554 (791)
T 3m0c_C 500 TKGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT-- 554 (791)
T ss_dssp TTSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC--
T ss_pred CCCCe-----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe--
Confidence 87421 2222 22345688999999766666665333 6788888754331 11110
Q ss_pred CCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 171 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 171 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
........|++++.+++++++-...+.|..+++...... .+. .. .+... .
T Consensus 555 -----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~-------------~~----~~~l~-~ 604 (791)
T 3m0c_C 555 -----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL-------------ED----EKRLA-H 604 (791)
T ss_dssp -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------------EC----TTTTS-S
T ss_pred -----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEe-------------cC----CCccC-C
Confidence 112257889999875655555556678999998654321 110 00 00111 2
Q ss_pred EEEEEEcCCCCEEEEE-ecCCeEEEEECCCCCCcceee
Q 004739 251 LTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRY 287 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~~ 287 (732)
..+|++. +.+|+.+ ...+.|...|..+++....+.
T Consensus 605 P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 605 PFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 4466664 3355555 456889999988876555443
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.22 Score=56.68 Aligned_cols=223 Identities=9% Similarity=0.002 Sum_probs=118.3
Q ss_pred CceeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeeEEEEcc----CCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEc
Q 004739 20 GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIET----GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL 93 (732)
Q Consensus 20 ~~V~~l~~s~--dg~~lasg~~dg~i~vWd~~~~~~~~~~~~----~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~ 93 (732)
..|.++.... +|.+.+ +..++.|..+|..+++....... .....|.++...++ ..|..+..++-|..||.
T Consensus 115 ~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~ 190 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLWV-CTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAED---GKLYIGHVEGGLSILSL 190 (781)
T ss_dssp SCEEEEEECSSTTSEEEE-EESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEET---TEEEEEETTTEEEEEET
T ss_pred CcceEEEecCccCCCEEE-EECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCC---CCEEEEecCCCeEEEcC
Confidence 3688888887 776544 55445689999887765432110 12346888888777 34555666656888987
Q ss_pred CCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 94 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.+..-..... .......-....|.++...+++ .+. .++.+ -|.+||..+.+... .....
T Consensus 191 ~~~~~~~~~~---~~~~~~~l~~~~i~~i~~d~~g-~lw-igt~~-Gl~~~d~~~~~~~~---------------~~~~~ 249 (781)
T 3v9f_A 191 NDKSVKHFVH---DPQNPNSLPGNDVRCIYKDTNG-NIW-IGTSK-GLALFNANTETFTN---------------FHNNP 249 (781)
T ss_dssp TTTEEEEECC-----------CCSSEEEEEECTTC-CEE-EEETT-EEEEEETTTTEEEC--------------------
T ss_pred CCCceEeeec---CCCCcccCCCCceeEEEEcCCC-CEE-EEeCC-cHheECCCCCcEEE---------------EEcCC
Confidence 7532110000 0000000013468888877643 444 45555 68899976654110 00000
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH 253 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (732)
. .........|.++...++ + .|..|+..+-|.++|..+..... +.. .....+. ......+-....|.+
T Consensus 250 ~---~~~~l~~~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~-~~~-----~~f~~~~-~~~~~~~l~~~~v~~ 317 (781)
T 3v9f_A 250 G---NIHGALSSYIFSIKQLKD-N-KLWIATELNGIMILDLQQNQFLL-PEQ-----IRFEFIR-EGDNNYSLSNASARY 317 (781)
T ss_dssp ---------CCCCEEEEEECTT-S-EEEEEESSSCEEEEETTCC---------------CEEEC-BCSSTTSBSSSCEEE
T ss_pred C---ccccccCceEEEEEECCC-C-CEEEEeCCCCeEEECCCCCeeee-eec-----ccccccc-CCCCCCCCCCCeEEE
Confidence 0 000012236888888877 4 56667765678899987653211 100 0000000 000001111225999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCC
Q 004739 254 VTFSPNGEEVLLSYSGEHVYLMDVNHA 280 (732)
Q Consensus 254 l~~sp~g~~l~~~~~dg~v~iwd~~~~ 280 (732)
+...++|. |.+|+.++-|..|+..+.
T Consensus 318 i~~D~~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 318 IFQDSFNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp EEECSSCC-EEEEEBSSCEEEECSSCC
T ss_pred EEEeCCCC-EEEEecCCeEEEeCCCCC
Confidence 99999987 677887888888987763
No 267
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.50 E-value=0.027 Score=56.11 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=111.7
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCcee
Q 004739 41 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK 120 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 120 (732)
..|+..|+.+.+....+ .....+.+++|++.. +.++++-...+.|..+++....... .....+........
T Consensus 10 ~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~------~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPD 80 (316)
T ss_dssp SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCC
T ss_pred CeEEEEECCCcceEehh--cCCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc------ccEEEEeCCCCCcC
Confidence 56999999887665554 334567899999874 3455555567899999987410000 00111222224567
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEE
Q 004739 121 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL 200 (732)
Q Consensus 121 ~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 200 (732)
.+++.+.+++++++-...+.|.+.++..... ..+.. ........++++|.++.++
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~------------~~~~~-------------~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCce------------EEEEE-------------CCCCCcceEEeCCCCCEEE
Confidence 8999876667777777788999999764321 11111 0112457899999756555
Q ss_pred EEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEECC
Q 004739 201 LVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN 278 (732)
Q Consensus 201 ~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~~ 278 (732)
++.... +.|...++.... ...+ . ... -...+.++++|++..|+.+.. .+.|..+|+.
T Consensus 136 ~~d~~~~~~I~~~~~dG~~-~~~~-------------~------~~~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGVD-IYSL-------------V------TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEECSSSCEEEEEETTSCC-EEEE-------------E------CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEccCCCCeEEEEcCCCCC-eEEE-------------E------ECC-CCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 554433 688888876422 1111 0 000 114788999998877776654 6799999987
Q ss_pred C
Q 004739 279 H 279 (732)
Q Consensus 279 ~ 279 (732)
.
T Consensus 195 g 195 (316)
T 1ijq_A 195 G 195 (316)
T ss_dssp S
T ss_pred C
Confidence 5
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.49 E-value=0.0039 Score=69.49 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=71.7
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCeeE--EEEccCCCcCeEEEEEecCCCCCEEEEEEC-CCcE
Q 004739 24 AISWNS-KGSLLISGSDDT-----------HINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV 88 (732)
Q Consensus 24 ~l~~s~-dg~~lasg~~dg-----------~i~vWd~~~~~~~--~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg~i 88 (732)
.+++.+ ++++++.|+.+. .+.+||+.+++.. ..+...+.....++++.++ |.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCCCce
Confidence 566777 888888887643 5889999887633 2332233334445777777 588888884 5689
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe-CC-----CcEEEEECCCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED-----GTLRQHDFRQGS 150 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s-~d-----g~i~vwd~~~~~ 150 (732)
.+||+.+..-.. +..+.. ...-.+++..+ ++++++.|+ .+ ..+.+||..+.+
T Consensus 268 ~~yd~~t~~W~~--------~~~~~~-~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 268 SLYDSSSDSWIP--------GPDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEGGGTEEEE--------CCCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEecCcCCceeE--------CCCCCc-cccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 999998643211 111211 11112344555 447888887 34 468999987653
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.48 E-value=0.0091 Score=56.02 Aligned_cols=173 Identities=13% Similarity=0.034 Sum_probs=101.0
Q ss_pred eeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCC
Q 004739 52 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 129 (732)
Q Consensus 52 ~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~ 129 (732)
+.+.++......-...+.|+++ .++.+.+.+| .|+.+|+.+++- +....- ..........+.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~---~LyestG~~g~S~v~~vD~~tgkv----------~~~~~l-~~~~fgeGi~~~~~ 75 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRG---HLYESTGETGRSSVRKVDLETGRI----------LQRAEV-PPPYFGAGIVAWRD 75 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETT---EEEEEECCTTSCEEEEEETTTCCE----------EEEEEC-CTTCCEEEEEEETT
T ss_pred EEEEEcCCCCccccccEEEECC---EEEEECCCCCCceEEEEECCCCCE----------EEEEeC-CCCcceeEEEEeCC
Confidence 4555663233345679999874 6777777754 899999997532 232221 22233332333355
Q ss_pred cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeE
Q 004739 130 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 209 (732)
Q Consensus 130 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v 209 (732)
++++..-.++.+.++|..+.+.. - .+.. .. .-..++ ++ +..|+.+..++.|
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~--------------~--------ti~~-~~---~Gwglt--~d-g~~L~vSdgs~~l 126 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPR--------------A--------RFRY-PG---EGWALT--SD-DSHLYMSDGTAVI 126 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEE--------------E--------EEEC-SS---CCCEEE--EC-SSCEEEECSSSEE
T ss_pred EEEEEEeeCCEEEEEECCcCcEE--------------E--------EEeC-CC---CceEEe--eC-CCEEEEECCCCeE
Confidence 66666677899999999887632 0 0110 11 112333 44 3455555568899
Q ss_pred EEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 210 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 210 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
.++|..+.+.+.++.... .+..-..++.+.+. +|+..+....+..|.+.|.++++...
T Consensus 127 ~~iDp~t~~~~~~I~V~~----------------~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 127 RKLDPDTLQQVGSIKVTA----------------GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp EEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred EEEeCCCCeEEEEEEEcc----------------CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence 999999987665542110 11111135667766 66644444458899999999976443
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.47 E-value=0.036 Score=60.30 Aligned_cols=61 Identities=10% Similarity=-0.079 Sum_probs=47.0
Q ss_pred CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004739 616 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 677 (732)
Q Consensus 616 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~ 677 (732)
.+|.|..||..+|+.+.++... ..+.+..+...+.+++.++.|+.|++||.++++.+..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 4689999999999998887643 233334444456677778999999999999999887654
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.44 E-value=0.02 Score=56.84 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=110.4
Q ss_pred CCceeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg--~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
......+++.++|+++++..... .|..+|..+++...............++..+. +..+++-..++.|.++|....
T Consensus 71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTT
T ss_pred CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCC
Confidence 34678899999999766654332 46677777776543331122223345555554 244444445888888887642
Q ss_pred CCCCCC-CCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCC-CCCCCCCCCCCcccceEEeeccCCcc
Q 004739 97 SGRGLD-DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 97 ~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
...... ...... ..........+.| +|++..++++-...+.|..+++.. +.. .....+...
T Consensus 149 ~~~v~~~~~~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~~----- 211 (306)
T 2p4o_A 149 SGSIWLEHPMLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVEQ----- 211 (306)
T ss_dssp EEEEEEECGGGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEES-----
T ss_pred cEeEEEECCcccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEecc-----
Confidence 111000 000000 0001111234555 776655666777778999999865 221 000111110
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
.....++++++ ++++++....+.|.++|.. ++... + ... ... ....+++
T Consensus 212 ----------~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~-~----------~~~-------~~~-~~~p~~~ 260 (306)
T 2p4o_A 212 ----------TNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTI-I----------AQA-------EQG-VIGSTAV 260 (306)
T ss_dssp ----------CCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEE-E----------ECG-------GGT-CTTEEEE
T ss_pred ----------CCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEE-E----------eec-------ccc-cCCceEE
Confidence 13356788998 6777777778899999975 32210 0 000 000 0147899
Q ss_pred EEc---CCCCEEEEEecCC
Q 004739 255 TFS---PNGEEVLLSYSGE 270 (732)
Q Consensus 255 ~~s---p~g~~l~~~~~dg 270 (732)
+|. |+++.|++++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 999 8988888777643
No 272
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.38 E-value=0.06 Score=58.61 Aligned_cols=61 Identities=11% Similarity=-0.080 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCcccEEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCCCCCccccC
Q 004739 616 DDGRWFIWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSG 677 (732)
Q Consensus 616 ~Dg~i~iWd~~tg~~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~~~~~~~~~ 677 (732)
.+|.|..||+.||+.+.+..- ...+.+-...-.+.+++.++.|+.|+.+|.++++++..+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 468999999999999887752 1222221223346677779999999999999999987664
No 273
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.33 E-value=0.099 Score=51.75 Aligned_cols=202 Identities=9% Similarity=0.118 Sum_probs=116.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCC--CCC---EEEEEE-C--CCcEEEEEcCCCCCCCCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---LVVSGA-G--DAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~--~g~---~l~s~~-~--dg~i~vwd~~~~~~~~~~ 102 (732)
..+++.....+-+.|+|+ +|+.+..+ .. +.++.+..-|.- .|+ ++++.. . +++|.+|++......
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--- 112 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--- 112 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---
Confidence 356666677889999999 89999888 32 567777777631 011 233333 3 578999977422111
Q ss_pred CCCCCCceeec-------cccCceeEEEE--ecCCCc-EEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 103 DNAITPSALYQ-------CHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 103 ~~~~~~~~~~~-------~h~~~v~~l~~--~p~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
+..+. .-...+..+++ +|..+. +++....+|.+..|++.....- .-....+..+.-
T Consensus 113 ------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lVR~f~l- 178 (355)
T 3amr_A 113 ------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKVRAFKM- 178 (355)
T ss_dssp ------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEEEEEEC-
T ss_pred ------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEEEEecC-
Confidence 22221 11145666777 664443 6777888899999998542210 000011111111
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
...+..|...+. ...|+.+-.+..|..+|.+...... +..+..+. .++-...+.
T Consensus 179 -----------gsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~------~g~l~aDvE 232 (355)
T 3amr_A 179 -----------NSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRAD------GRHLTRDIE 232 (355)
T ss_dssp -----------SSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC--------CEEEEEBS------SSSBCSCEE
T ss_pred -----------CCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC--------ceEEEEec------CCccccCcc
Confidence 125778899887 5688888888777777754221000 00111110 111122377
Q ss_pred EEEE--cCCCC-EEEEEec-CCeEEEEECCC
Q 004739 253 HVTF--SPNGE-EVLLSYS-GEHVYLMDVNH 279 (732)
Q Consensus 253 ~l~~--sp~g~-~l~~~~~-dg~v~iwd~~~ 279 (732)
.|++ .++++ +|+++++ ++.+.+||...
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 7777 56666 7888885 77999999974
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.32 E-value=0.076 Score=54.80 Aligned_cols=192 Identities=13% Similarity=0.068 Sum_probs=116.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004739 33 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 112 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 112 (732)
+|+.+. ...|+..++........+ .....+..++|++.. +.++.+-...+.|+.+++....... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~ 154 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI 154 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence 444443 367999998876555444 345678899999874 3445554567889888886421000 011222
Q ss_pred ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004739 113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 192 (732)
Q Consensus 113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 192 (732)
.........+++.+.+++++++-...+.|.+.++..... ..+.. ........|++
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------------~~l~~-------------~~~~~P~~iav 209 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVV 209 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE------------EEEEE-------------CSSCCEEEEEE
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce------------EEEEe-------------CCCCCcceEEE
Confidence 223456788999886667777777788899988765431 11111 01124678999
Q ss_pred cCCCCCEEEEEeC-CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC
Q 004739 193 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 270 (732)
Q Consensus 193 ~~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg 270 (732)
+|.++.++++-.. .+.|...++...... .+ . ... -...+.|+++|++..|+.+.. .+
T Consensus 210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~-------------~------~~~-l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SL-------------V------TEN-IQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp ETTTTEEEEEECSSSCCEEEEETTSCSCE-EE-------------E------CSS-CSCEEEEEEETTTTEEEEEETTTT
T ss_pred ecccCeEEEEeCCCCCEEEEEeCCCCccE-EE-------------E------ECC-CCceEEEEEEeCCCEEEEEECCCC
Confidence 9975655555433 378888888753211 11 0 001 114788999998887877754 67
Q ss_pred eEEEEECCCC
Q 004739 271 HVYLMDVNHA 280 (732)
Q Consensus 271 ~v~iwd~~~~ 280 (732)
.|..+|+...
T Consensus 269 ~I~~~d~dG~ 278 (400)
T 3p5b_L 269 SISSIDVNGG 278 (400)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEeCCCC
Confidence 8999998763
No 275
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.26 E-value=0.053 Score=61.02 Aligned_cols=187 Identities=12% Similarity=0.068 Sum_probs=114.3
Q ss_pred CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCce
Q 004739 40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 119 (732)
Q Consensus 40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 119 (732)
...|+..++........+ .....+.+|+|++.. +.++++-...+.|+.+++....... .....+.......
T Consensus 403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P 473 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP 473 (791)
T ss_dssp BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred ccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCc
Confidence 356888888766554444 344567899999864 3555565567889988887421100 1122223234567
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004739 120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 199 (732)
Q Consensus 120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 199 (732)
..|++.+.+++++++-...+.|.+.++..... ..+.. ........|+++|.++.+
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~------------~~l~~-------------~~l~~P~gIaVDp~~g~L 528 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFR-------------ENGSKPRAIVVDPVHGFM 528 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeE------------EEEEe-------------CCCCCcceEEEecCCCCE
Confidence 78999887767887877888999999865431 11111 011246789999985555
Q ss_pred EEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEEC
Q 004739 200 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV 277 (732)
Q Consensus 200 l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~ 277 (732)
+++-... +.|...++...... .+ . ... -...+.|++++.+..|+.+.. .+.|..+++
T Consensus 529 YwtD~g~~~~I~~~~~dG~~~~-~l-------------v------~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 529 YWTDWGTPAKIKKGGLNGVDIY-SL-------------V------TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp EEEECSSSCEEEEEETTSCCEE-EE-------------E------CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEecCCCCCeEEEEecCCCceE-EE-------------E------eCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 5554333 77888888753221 11 0 001 114788999988777777754 578999998
Q ss_pred CCCC
Q 004739 278 NHAG 281 (732)
Q Consensus 278 ~~~~ 281 (732)
....
T Consensus 588 dG~~ 591 (791)
T 3m0c_C 588 NGGN 591 (791)
T ss_dssp TSCS
T ss_pred CCCc
Confidence 7643
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.22 E-value=0.039 Score=54.90 Aligned_cols=184 Identities=7% Similarity=0.033 Sum_probs=111.0
Q ss_pred CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCce
Q 004739 40 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV 119 (732)
Q Consensus 40 dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 119 (732)
...|+..++........+.......+.+++|++.. +.++.+-...+.|..+++...... ...+.......
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~~---------~~~~~~~l~~p 81 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTESV---------QNVVVSGLLSP 81 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSCC---------CEEEEECCSCC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCce---------EEEEcCCCCCc
Confidence 46799999887631111111223456799999864 355555556788999988753211 11222223456
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE
Q 004739 120 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL 199 (732)
Q Consensus 120 ~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 199 (732)
..+++.+.+++++++-...+.|.++++..... ..+.. ........++++|.++.+
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g~l 136 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSGFM 136 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGTEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCCEE
Confidence 78999876767777777778899999865331 11110 111245789999875544
Q ss_pred EEEEe-CCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CCeEEEEEC
Q 004739 200 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDV 277 (732)
Q Consensus 200 l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg~v~iwd~ 277 (732)
+++-. ..+.|...++..... ..+ .. . . -...+.|+++|++..|+.+.. .+.|..+|+
T Consensus 137 y~td~~~~~~I~r~~~dG~~~-~~~-------------~~-----~-~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSSR-FII-------------IN-----S-E-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EEEECSSSCEEEEEETTSCSC-EEE-------------EC-----S-S-CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEecCCCCEEEEEEcCCCCe-EEE-------------EE-----C-C-CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 55442 357888888764321 111 00 0 0 113688999997777777654 689999998
Q ss_pred CC
Q 004739 278 NH 279 (732)
Q Consensus 278 ~~ 279 (732)
..
T Consensus 196 dG 197 (318)
T 3sov_A 196 DG 197 (318)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 277
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.20 E-value=0.0013 Score=73.58 Aligned_cols=205 Identities=7% Similarity=-0.036 Sum_probs=115.1
Q ss_pred CceeEEEEcCCCCEEEEE-eCCCcEEEEeCCC----CeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcC
Q 004739 20 GCVNAISWNSKGSLLISG-SDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg-~~dg~i~vWd~~~----~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~ 94 (732)
..+..++|.+.+..|..+ ...+.|+.+++.. ......+ .........|++.+.. +.++++-...+.|.+.++.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecC
Confidence 456688999866655554 4567899999875 2222112 1222345678888653 4555655567889999987
Q ss_pred CCCCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCCCCCCCCCCcccceEEeeccCC
Q 004739 95 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG 172 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (732)
... +..+ .........|++.|.++.++++-... +.|.+.++...... .+..
T Consensus 484 g~~-----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~------------~l~~---- 536 (699)
T 1n7d_A 484 GVK-----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------SLVT---- 536 (699)
T ss_dssp SCC-----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC------------EESC----
T ss_pred CCc-----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee------------EEEe----
Confidence 421 1222 11234567889988665666554332 66777766432210 0000
Q ss_pred ccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEE
Q 004739 173 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT 252 (732)
Q Consensus 173 ~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 252 (732)
........|+|+|+++.++++-+..+.|..+|+..... ..+. .. .+... ...
T Consensus 537 ---------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~-------------~~----~~~~~-~P~ 588 (699)
T 1n7d_A 537 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-------------ED----EKRLA-HPF 588 (699)
T ss_dssp ---------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEEC-------------CC----SSSCS-SCC
T ss_pred ---------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEE-------------ec----CCcCC-Cce
Confidence 01124567899998677777777788999999874321 1110 00 00000 123
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 004739 253 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 282 (732)
Q Consensus 253 ~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 282 (732)
.|++..+ .++++....+.|..++..+++.
T Consensus 589 glavd~~-~lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 589 SLAVFED-KVFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp CCEEETT-EEEEECSTTTCEEEEETTTEEE
T ss_pred EeEEECC-EEEEEeCCCCeEEEEEccCCCc
Confidence 4555544 3444445578999999877543
No 278
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.03 E-value=0.2 Score=54.88 Aligned_cols=207 Identities=9% Similarity=0.018 Sum_probs=127.0
Q ss_pred CceeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg~~la-sg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
..+..++|++.+..|. +-..++.|+.+++........+ .........+++.+.. ++++++-...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT-
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc-
Confidence 4567899998665555 4456788999998755443333 2223457789998764 4555665667889999987422
Q ss_pred CCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEE-eCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 99 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 99 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
...+ ...-.....|++.|..+.++++- +..+.|...++..... ..+..
T Consensus 114 ----------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~~-------- 163 (628)
T 4a0p_A 114 ----------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLVP-------- 163 (628)
T ss_dssp ----------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC--------
T ss_pred ----------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEEC--------
Confidence 1222 23345678999999665666654 2356777777754431 11110
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
.......+++++++++++++-...+.|..+|+..... ..+. . ... ....+++
T Consensus 164 ------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-------------------~-~l~-~P~glav 215 (628)
T 4a0p_A 164 ------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-------------------D-DLP-HPFGLTQ 215 (628)
T ss_dssp ------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-------------------E-CCS-CEEEEEE
T ss_pred ------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-------------------c-cCC-CceEEEE
Confidence 1225688999998555555656678999999875422 1110 0 001 2456777
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCcceeee
Q 004739 257 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT 288 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 288 (732)
.. +...++-...+.|...|..+++....+..
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 65 34444444578999999888766555443
No 279
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.89 E-value=0.13 Score=56.40 Aligned_cols=208 Identities=9% Similarity=0.061 Sum_probs=120.5
Q ss_pred CCceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~ 97 (732)
-....+++|++.+..|..+. ..+.|..+++........+....-.....+++.+.+ ++++++-...+.|.+.++....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC
Confidence 34577899998666555444 567888898875532222213333568899999864 3555665667899999987432
Q ss_pred CCCCCCCCCCCceeec-cccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 98 GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
...+. ........|++.|.++.++++-- ..+.|...++..... ..+..
T Consensus 118 -----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~------- 167 (619)
T 3s94_A 118 -----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN------- 167 (619)
T ss_dssp -----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC-------
T ss_pred -----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe-------
Confidence 12222 33456788999997666666642 245666666643321 11110
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT 255 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 255 (732)
........+++++++++++++-...+.|..+|+......... .+... ....|+
T Consensus 168 ------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~--------------------~~~~~-~P~gi~ 220 (619)
T 3s94_A 168 ------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--------------------KGSLP-HPFALT 220 (619)
T ss_dssp ------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------CCCEE
T ss_pred ------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE--------------------eCCCC-CceEEE
Confidence 012256889999985655566566788999988753211100 00000 123567
Q ss_pred EcCCCCEEEEE-ecCCeEEEEECCCCCCccee
Q 004739 256 FSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 256 ~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~ 286 (732)
+..+ .|+.+ ...+.|...|..+++....+
T Consensus 221 ~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 221 LFED--ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp ESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence 7655 45554 45789999999887654443
No 280
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.80 E-value=0.054 Score=58.86 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
.+..++.++.||.|+.||.++++..-
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 45678889999999999999976543
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.77 E-value=0.11 Score=54.23 Aligned_cols=213 Identities=11% Similarity=0.014 Sum_probs=115.3
Q ss_pred ceeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC---Cc-EEEEEcC
Q 004739 21 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNLS 94 (732)
Q Consensus 21 ~V~~l~~s~d--g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d---g~-i~vwd~~ 94 (732)
.-..++|+|+ +..|..+...+.|+.+|+.+++..... .......+++|+++ |+++++.... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEECC
Confidence 4568999985 334444443388999999887765443 34456899999999 4655554321 11 2222222
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
. . . .....+. .......+++.|.++.++++-..++.|+.+|..++... ..+....
T Consensus 216 ~--~-~------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~~---- 270 (433)
T 4hw6_A 216 S--G-F------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMMD---- 270 (433)
T ss_dssp G--T-T------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEECS----
T ss_pred C--C-e------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEeccC----
Confidence 1 1 0 0001111 23456778899855577766667788999998755410 0111100
Q ss_pred ccccCCCCCccceEEEEecCCCCC-EEEEEeCCCeEEEEECCCCC-CCc---ccccCCCCCCccccccccccccCCCccc
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLP-PLT---SCQKRMSPPPCVNYFCPMHLSEHGRSSL 249 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~~dg~v~iwd~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (732)
....-..++|+|+ ++ ++++-...+.|+.++..... .+. .+...... ..+.... .....-.
T Consensus 271 --------~~~~~~~ia~dpd-G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~----~g~~dg~-~~~a~~~- 335 (433)
T 4hw6_A 271 --------TKGSNFHIVWHPT-GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSS----PGWVDGM-GTGARLW- 335 (433)
T ss_dssp --------CCSSCEEEEECTT-SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTC----CCCBCEE-GGGSBCS-
T ss_pred --------CCCCcccEEEeCC-CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCC----CccCCCc-ccceEEc-
Confidence 0112246999999 56 55555667899998876321 110 00000000 0000000 0000011
Q ss_pred cEEEEEE---------cCCCCEEEEEecCCeEEEEEC
Q 004739 250 HLTHVTF---------SPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 250 ~i~~l~~---------sp~g~~l~~~~~dg~v~iwd~ 277 (732)
....+++ .++|.+.++-...+.|+.++.
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 3677999 777776666666788998874
No 282
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.76 E-value=0.39 Score=52.65 Aligned_cols=191 Identities=7% Similarity=-0.007 Sum_probs=118.7
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceee
Q 004739 33 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY 112 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 112 (732)
+|+-+ ....|+..++.+......+....-..+.+++|++.. +.++.+-..++.|..+++..... ....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~~----------~~v~ 75 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSAL----------EHVV 75 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC----------EEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCCc----------EEEE
Confidence 34433 346799999987654443322334568899999975 45555556678899998874221 1112
Q ss_pred ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe
Q 004739 113 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 192 (732)
Q Consensus 113 ~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 192 (732)
.........|++.+.+++++++-...+.|.+.++..... ..+.. ........|++
T Consensus 76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iav 130 (628)
T 4a0p_A 76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALAL 130 (628)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEE
T ss_pred eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEE
Confidence 222245778999876767777777778899999865431 11110 01124579999
Q ss_pred cCCCCCEEEEE-eCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEec-CC
Q 004739 193 SSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE 270 (732)
Q Consensus 193 ~~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~-dg 270 (732)
+|..+.++++- +..+.|...++...... .+ . . .....+.|+++++++.|+.+.. .+
T Consensus 131 dp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l-------------~------~--~~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 131 DPAEGFMYWTEWGGKPKIDRAAMDGSERT-TL-------------V------P--NVGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-------------E------C--SCSSEEEEEEETTTTEEEEEETTTT
T ss_pred ccCCCeEEEeCCCCCCEEEEEeCCCCceE-EE-------------E------C--CCCCcceEEEccccCEEEEEECCCC
Confidence 99756555554 22567888887643211 11 0 0 0114788999998877777755 67
Q ss_pred eEEEEECCCCCC
Q 004739 271 HVYLMDVNHAGG 282 (732)
Q Consensus 271 ~v~iwd~~~~~~ 282 (732)
.|..+++.....
T Consensus 189 ~I~~~d~dG~~~ 200 (628)
T 4a0p_A 189 LIESSNMLGLNR 200 (628)
T ss_dssp EEEEEETTSCSC
T ss_pred EEEEEcCCCCce
Confidence 999999976443
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.70 E-value=1.2 Score=52.53 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCceeEEEEcCC------CCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 19 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 19 ~~~V~~l~~s~d------g~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
...|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....-+......++.+..-+...+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 568999999863 369999996 9999999999877665442222233444444322113688999999998777
Q ss_pred EcCC
Q 004739 92 NLSR 95 (732)
Q Consensus 92 d~~~ 95 (732)
.+..
T Consensus 633 ~~d~ 636 (1158)
T 3ei3_A 633 GLNI 636 (1158)
T ss_dssp EECT
T ss_pred EEcC
Confidence 7654
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.64 E-value=0.039 Score=61.40 Aligned_cols=73 Identities=12% Similarity=0.213 Sum_probs=49.1
Q ss_pred ceeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeeEEEEccCCCc-CeEEEEEecCCCCCEEEEEE-CC-----CcEEEEE
Q 004739 21 CVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGA-GD-----AEVRLFN 92 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~-dg~i~vWd~~~~~~~~~~~~~h~~-~V~~~~~s~~~~g~~l~s~~-~d-----g~i~vwd 92 (732)
...++++..++++++.|+. +..+.+||..+.+....- ..+.. .-.++...++ |++++.|+ .+ ..+.+||
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~d--g~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSD--GRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTT--SCEEEECCCCCSSSCCCCEEEEE
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecC--CeEEEEeCcccCCcccccceEeC
Confidence 3445778899999999984 568999999887654322 11222 2234555666 48888888 34 5689999
Q ss_pred cCCC
Q 004739 93 LSRF 96 (732)
Q Consensus 93 ~~~~ 96 (732)
+.+.
T Consensus 321 ~~t~ 324 (656)
T 1k3i_A 321 PSSK 324 (656)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8764
No 285
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.62 E-value=0.076 Score=57.80 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=47.9
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCCCeeEEEEccC-CC--------cCeEEEEE
Q 004739 24 AISWNSKGSLLISGSD--------------------D----THINVWSYSSRKLLHSIETG-HS--------ANVFCTKF 70 (732)
Q Consensus 24 ~l~~s~dg~~lasg~~--------------------d----g~i~vWd~~~~~~~~~~~~~-h~--------~~V~~~~~ 70 (732)
.+++.|+..++..+.. | +.|.-+|..+|+.+..+... |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4677777777776653 2 58999999999999887433 32 1221 222
Q ss_pred e-cCCCC---CEEEEEECCCcEEEEEcCCCC
Q 004739 71 V-PETSD---ELVVSGAGDAEVRLFNLSRFS 97 (732)
Q Consensus 71 s-~~~~g---~~l~s~~~dg~i~vwd~~~~~ 97 (732)
. .+ | ..++.++.+|.++++|..+++
T Consensus 329 ~~~~--G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 329 KAKD--GKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp ECSS--SCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ecCC--CCEEEEEEEECCCceEEEEECCCCC
Confidence 1 23 4 378888999999999988753
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.60 E-value=0.14 Score=50.28 Aligned_cols=166 Identities=10% Similarity=0.047 Sum_probs=100.9
Q ss_pred CCceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEEccC----CC--cCeEEEEE---ecCCCCCEEEEEE-----
Q 004739 19 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETG----HS--ANVFCTKF---VPETSDELVVSGA----- 83 (732)
Q Consensus 19 ~~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~~~~----h~--~~V~~~~~---s~~~~g~~l~s~~----- 83 (732)
.----+++|.+... ++++.-..++|..||...+........+ .. ..+..|.| .|+ +.++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEETTTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEcccccc
Confidence 33345788987544 4454447899999999866433332122 11 13589999 577 46666543
Q ss_pred --------CCCcEEEEEcC---CCCCCCCCCCCCCCceeeccc-----------cCceeEEEEecCCCcEEEEEeCC-Cc
Q 004739 84 --------GDAEVRLFNLS---RFSGRGLDDNAITPSALYQCH-----------TRRVKKLAVEVGNPHVVWSASED-GT 140 (732)
Q Consensus 84 --------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~h-----------~~~v~~l~~~p~~~~~l~s~s~d-g~ 140 (732)
.+..|..+|+. ++.... ...+... ......++..+++ +..++++.. +.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~--------~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~ 160 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVW--------SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPA 160 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSE--------EEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEE--------EecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCe
Confidence 15779999998 532211 1111111 1348899999955 777788877 77
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
|...+..... ...|.+... ........+.|++.|+ +++|++....|.|.-+|++.
T Consensus 161 I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 161 IARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEECSS
T ss_pred EEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcCCC
Confidence 6666654332 112221111 0112235678999999 67777776699999999883
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.51 E-value=0.16 Score=57.41 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=67.0
Q ss_pred eEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCee--EEEEccCCCcCeEEEEEecCCCCCEEEEEEC---CCcEEEEE
Q 004739 23 NAISWNSKGSLLISGSDD-----THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFN 92 (732)
Q Consensus 23 ~~l~~s~dg~~lasg~~d-----g~i~vWd~~~~~~--~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---dg~i~vwd 92 (732)
..++|+|||+.|+....| ..|+++++.+++. ...+..........+.|+|+ |++|+..+. ...|.++|
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEE
Confidence 468899999988877654 3688888887642 22231233345678899999 477765542 34577888
Q ss_pred cCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC--C--cEEEEECCC
Q 004739 93 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ 148 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d--g--~i~vwd~~~ 148 (732)
+.++.... ..............++.|+. ++.+++....+ + .|..+|+.+
T Consensus 302 ~~~~~~~~------~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGNAHN------TLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCTTCC------CEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCCc------eeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 87642111 00111222334555666554 54555555443 2 566666654
No 288
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.49 E-value=0.1 Score=56.82 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=21.4
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
.+..++.++.||.++.||.++++..-
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEE
Confidence 35678889999999999999976543
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.47 E-value=0.074 Score=55.48 Aligned_cols=157 Identities=7% Similarity=0.028 Sum_probs=95.9
Q ss_pred ceeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC-CC----cEEEEEcC
Q 004739 21 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS 94 (732)
Q Consensus 21 ~V~~l~~s~-dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~-dg----~i~vwd~~ 94 (732)
....|+++| ++..|..+...+.|+.+|+.+++..... ........++|+++ |++|+.+.. ++ .+.+.+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 3555555554488999998877655444 34456889999998 475555543 22 23333332
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
. .. .....+. .......++++|+++.++++-..++.|..++...+... .+....
T Consensus 214 g-~~--------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~~~~---- 267 (430)
T 3tc9_A 214 S-GF--------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLFTIQ---- 267 (430)
T ss_dssp G-TS--------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEEECS----
T ss_pred C-ce--------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEEEcC----
Confidence 1 11 1012222 23446788899966677777777788999998754310 111100
Q ss_pred ccccCCCCCccceEEEEecCCCCC-EEEEEeCCCeEEEEECCC
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~-~l~tg~~dg~v~iwd~~~ 216 (732)
.......++|+|+ ++ ++++-...+.|..++...
T Consensus 268 --------~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 268 --------DSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp --------SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEET
T ss_pred --------CCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCCc
Confidence 0124578999999 66 555556678899988753
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.46 E-value=0.071 Score=52.28 Aligned_cols=178 Identities=7% Similarity=0.036 Sum_probs=104.7
Q ss_pred CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc----c--cCceeEEEE---ecCCCcEE
Q 004739 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPHVV 132 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~p~~~~~l 132 (732)
..--.+++|++.. +.++++.-..++|..||....... .+ .+.+ . ...+..|.| .|+ ++++
T Consensus 12 ~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~--------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~ 80 (334)
T 2p9w_A 12 NLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHF--------NV-VIDGASSNGDGEQQMSGLSLLTHDNS-KRLF 80 (334)
T ss_dssp TCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEE--------EE-CCTTTCCSSCCSEEEEEEEESSSSSC-CEEE
T ss_pred ccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEE--------EE-ecCCccccCCCcceeeEEEEeccCCC-CcEE
Confidence 3345688999864 455555558999999998742111 01 1211 0 114578999 575 4676
Q ss_pred EEEe-------------CCCcEEEEECC---CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCC
Q 004739 133 WSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR 196 (732)
Q Consensus 133 ~s~s-------------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 196 (732)
++.. .+..|..+|+. +++.. ...++..-.................++..++
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~- 147 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD- 147 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTT-
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCccccccccccccccccCCceeEECCC-
Confidence 6433 25779999998 55532 1122210000000000001235789999998
Q ss_pred CCEEEEEeCC-CeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEE
Q 004739 197 PHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM 275 (732)
Q Consensus 197 ~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iw 275 (732)
|+..++++.. +.|...+.... .+..+....+ ........+.++++|+|+.|++....|.+..+
T Consensus 148 GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~---------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f 211 (334)
T 2p9w_A 148 GNSYVAFALGMPAIARVSADGK-TVSTFAWESG---------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAF 211 (334)
T ss_dssp SCEEEEEEESSCEEEEECTTSC-CEEEEEECCC---------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred CCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCC---------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence 8889988888 88877777643 2221110000 01111136789999999999998779999999
Q ss_pred ECCC
Q 004739 276 DVNH 279 (732)
Q Consensus 276 d~~~ 279 (732)
|+.+
T Consensus 212 D~~~ 215 (334)
T 2p9w_A 212 DVSK 215 (334)
T ss_dssp ECSS
T ss_pred cCCC
Confidence 9985
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.30 E-value=0.29 Score=50.95 Aligned_cols=240 Identities=7% Similarity=0.023 Sum_probs=116.0
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEeCC---Cc-EEEEeCCCCee-EEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcE
Q 004739 14 ELEGHQGCVNAISWNSKGSLLISGSDD---TH-INVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV 88 (732)
Q Consensus 14 ~l~~h~~~V~~l~~s~dg~~lasg~~d---g~-i~vWd~~~~~~-~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i 88 (732)
.+.+.......++|+++|+++++.... .. +...+...+.. ...+ ........++++|.. |.++++-..++.|
T Consensus 176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~-G~lyv~d~~~~~V 252 (433)
T 4hw6_A 176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHPQN-GKIYYTRYHHAMI 252 (433)
T ss_dssp EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECTTT-CCEEECBTTCSEE
T ss_pred EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeCCC-CeEEEEECCCCEE
Confidence 333344568899999999955554321 12 33333222111 0111 122345678899943 5666666677889
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEee
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD 168 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 168 (732)
+.+|..++... ..+... +....-..++|+|++..++++-...+.|+.+++....... .....+..
T Consensus 253 ~~~d~~~g~~~-------~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~-------~~~~~~ag 317 (433)
T 4hw6_A 253 SSYDPATGTLT-------EEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL-------AVPYIVCG 317 (433)
T ss_dssp EEECTTTCCEE-------EEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB-------CCCEEEEE
T ss_pred EEEECCCCeEE-------EEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc-------CcEEEEEe
Confidence 99988743210 001111 1122234699999764466666677889998875321100 00001111
Q ss_pred c-c-CCccccccCCCCCccceEEEEe---------cCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCcccccc
Q 004739 169 L-R-CGAKRSLADPPKQTLSLKSCDI---------SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 237 (732)
Q Consensus 169 ~-~-~~~~~~~~~~~~~~~~v~~i~~---------~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 237 (732)
. . .+...-. .....-.....+++ .++ ++++++-..++.|+.++.. +. +..+..... .+...+.
T Consensus 318 ~~g~~g~~dg~-~~~a~~~~P~giav~~n~~y~~dd~~-g~lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~--~~~~G~~ 391 (433)
T 4hw6_A 318 QHSSPGWVDGM-GTGARLWGPNQGIFVKNEAYAGEEDE-YDFYFCDRDSHTVRVLTPE-GR-VTTYAGRGN--SREWGYV 391 (433)
T ss_dssp CTTCCCCBCEE-GGGSBCSSEEEEEEEECGGGTTSSCC-EEEEEEETTTTEEEEECTT-SE-EEEEECCCT--TCSSCCB
T ss_pred cCCCCccCCCc-ccceEEcCCccEEEEccccccccCCC-CcEEEEECCCCEEEEECCC-CC-EEEEEeCCC--CCccccC
Confidence 0 0 0000000 00001113567888 555 6677776777889999853 32 221111100 0000000
Q ss_pred ccccccCCCccccEEEEEEc-CCCCEEEEEecCCeEEEEECC
Q 004739 238 PMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVN 278 (732)
Q Consensus 238 ~~~~~~~~~~~~~i~~l~~s-p~g~~l~~~~~dg~v~iwd~~ 278 (732)
.........-. ....|+++ ++|.++++=...+.|+.++++
T Consensus 392 dG~~~~~~~~~-~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 392 DGELRSQALFN-HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CEETTTTCBCS-SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCccccccEeC-CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 00000000111 36789999 566655555567888888764
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.24 E-value=0.59 Score=46.49 Aligned_cols=198 Identities=11% Similarity=0.075 Sum_probs=104.0
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEE-EEcCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL-FNLSRFS 97 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~v-wd~~~~~ 97 (732)
...+..+.+.++++.++.+ .++.|..- ...++.-..+..++...+..+.+.|+ +.+++.+ .+|.+.. +|-.
T Consensus 121 ~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~G~~~~S~d~g--- 192 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPS--GEYVAVS-SRGSFYSTWEPG--- 192 (327)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTT--SCEEEEE-TTSSEEEEECTT---
T ss_pred CCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCC--CcEEEEE-CCCcEEEEeCCC---
Confidence 3457788887777766665 45554321 22343333332456678899999997 4666655 4454433 3321
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccc
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL 177 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (732)
+.. ...+ -......+..+.+.+++ .++ .++.+|.+++.+...++. |. .+
T Consensus 193 G~t-----W~~~--~~~~~~~~~~~~~~~~g-~~~-~~~~~G~~~~s~~D~G~t---------------W~-------~~ 241 (327)
T 2xbg_A 193 QTA-----WEPH--NRTTSRRLHNMGFTPDG-RLW-MIVNGGKIAFSDPDNSEN---------------WG-------EL 241 (327)
T ss_dssp CSS-----CEEE--ECCSSSCEEEEEECTTS-CEE-EEETTTEEEEEETTEEEE---------------EC-------CC
T ss_pred CCc-----eeEC--CCCCCCccceeEECCCC-CEE-EEeCCceEEEecCCCCCe---------------eE-------ec
Confidence 111 1111 12345678889988854 554 455678777764221210 00 00
Q ss_pred cCC-CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 178 ADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 178 ~~~-~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
... ......+.++.+.++ +.+++++ .++.| .+..+.++.-..+... ..... .+.++.|
T Consensus 242 ~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~-----------------~~~~~-~~~~v~~ 300 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQDVDV-----------------KKVPS-NFYKILF 300 (327)
T ss_dssp BCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEECGGG-----------------TTSSS-CCCEEEE
T ss_pred cCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEcCcc-----------------CCCCC-CeEEEEE
Confidence 000 011225788889876 5566555 46766 4444444322111000 00111 3677888
Q ss_pred cCCCCEEEEEecCCeEEEEEC
Q 004739 257 SPNGEEVLLSYSGEHVYLMDV 277 (732)
Q Consensus 257 sp~g~~l~~~~~dg~v~iwd~ 277 (732)
.+++ .+++++.+|.|.-++-
T Consensus 301 ~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 301 FSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EETT-EEEEECSTTEEEEECC
T ss_pred ECCC-ceEEEcCCceEEEEcC
Confidence 7555 4777788898877654
No 293
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.21 E-value=0.16 Score=55.15 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=21.1
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCc
Q 004739 259 NGEEVLLSYSGEHVYLMDVNHAGGR 283 (732)
Q Consensus 259 ~g~~l~~~~~dg~v~iwd~~~~~~~ 283 (732)
.+..++.++.||.|+.||.++++..
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEE
Confidence 4667888999999999999997644
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.17 E-value=0.047 Score=56.97 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=92.6
Q ss_pred CeEEEEEec-CCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC---
Q 004739 64 NVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--- 139 (732)
Q Consensus 64 ~V~~~~~s~-~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--- 139 (732)
....++++| +. ..|+.+...+.|+.+|+.... +..+.........|+|++++..++++...++
T Consensus 138 ~P~~lavdp~~~--g~Lyv~d~~~~I~~id~~~~~-----------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNH--NHLYLVGEQHPTRLIDFEKEY-----------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTEE--EEEEEEEBTEEEEEEETTTTE-----------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCCC--CeEEEEeCCCcEEEEECCCCE-----------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 457899997 33 456555555888899987522 3333334566889999996633555544322
Q ss_pred -cEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCC
Q 004739 140 -TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP 218 (732)
Q Consensus 140 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~ 218 (732)
.+.+.+. .+.... ...+. . ......++++|+++.++++-..++.|+.++.....
T Consensus 205 ~~v~~~~~-~g~~~~---------~~~l~-----------~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 205 PNNYILTR-ESGFKV---------ITELT-----------K----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp EEEEEEEG-GGTSCS---------EEEEE-----------E----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred ceEEEEeC-CCceee---------eeeec-----------c----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 2333332 222100 00000 0 11345778999547777777778899999987543
Q ss_pred CCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 004739 219 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH 279 (732)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~~ 279 (732)
..... . .+. ......++|+|+|++|+.+. ..+.|+.++...
T Consensus 260 ~~~~~----------------~---~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 260 TTPLF----------------T---IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEEE----------------E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEE----------------E---cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 10000 0 001 11367899999999666654 578999988764
No 295
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.08 E-value=1 Score=42.69 Aligned_cols=167 Identities=10% Similarity=0.091 Sum_probs=99.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee---EEEEc-----cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIE-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF 91 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~---~~~~~-----~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vw 91 (732)
...-.|++.+++.++++.-.++.+.++++..... +.... .........++|+|.. +.|+++.......||
T Consensus 70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~ 147 (255)
T 3qqz_A 70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVY 147 (255)
T ss_dssp SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEE
T ss_pred CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEE
Confidence 4566788888888777665678899998765432 22221 1233456899999984 566666666566666
Q ss_pred EcCCCCCCCCCCCCCCCceee-------ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccce
Q 004739 92 NLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN 164 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (732)
.+...... ..+..+ ..+...+.+++++|..+++++.....+.|.++|..... .
T Consensus 148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~ 207 (255)
T 3qqz_A 148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I 207 (255)
T ss_dssp EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence 66410000 001111 11234578999999887888888888889999975431 1
Q ss_pred EEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 165 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
..+.+..+... ....-..-..|+|.++ |+++++ +..+.++.+..
T Consensus 208 ~~~~L~~g~~~----l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 208 GEMSLTKGSRG----LSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEECSTTGGG----CSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred EEEEcCCccCC----cccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence 22233222100 0111125678999998 665555 66667776654
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.98 E-value=1 Score=49.20 Aligned_cols=200 Identities=7% Similarity=-0.014 Sum_probs=116.3
Q ss_pred CceeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 20 GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 20 ~~V~~l~~s~dg~~l-asg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
..+.+++|.+.+..| ++-...+.|+.+++........+ ...-.....+++.+.+ ++++++-+..+.|.+.++....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~- 425 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM- 425 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence 346788998854444 44445788999988754433333 3333567799998754 4566665667889999987431
Q ss_pred CCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccc
Q 004739 99 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS 176 (732)
Q Consensus 99 ~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (732)
...+ ...-....+|++.|..+.++++-. ..+.|...++..... ..+.
T Consensus 426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~------------~~l~--------- 474 (619)
T 3s94_A 426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR------------VVLV--------- 474 (619)
T ss_dssp ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEE---------
T ss_pred ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc------------EEEE---------
Confidence 1222 223456889999997656666542 235666666643221 1111
Q ss_pred ccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEE
Q 004739 177 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF 256 (732)
Q Consensus 177 ~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 256 (732)
.........++++++++++.++=+..+.|..+++..... ..+ .... ..| ..+|++
T Consensus 475 ----~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~-------------~~~~---l~~----P~glav 529 (619)
T 3s94_A 475 ----NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RVL-------------VEDK---IPH----IFGFTL 529 (619)
T ss_dssp ----CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-------------EECC---CCS----SCCEEE
T ss_pred ----eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EEE-------------eccC---CCC----cEEEEE
Confidence 011225678999987555555555667899999864321 111 0000 111 224555
Q ss_pred cCCCCEEEEEec-CCeEEEEECCCC
Q 004739 257 SPNGEEVLLSYS-GEHVYLMDVNHA 280 (732)
Q Consensus 257 sp~g~~l~~~~~-dg~v~iwd~~~~ 280 (732)
..+ +|+.+.. .+.|...|..++
T Consensus 530 ~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 530 LGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ETT--EEEEECTTSSCEEEEESSSC
T ss_pred ECC--EEEEeecCCCeEEEEEcCCC
Confidence 433 5555544 677888888876
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.75 E-value=1.2 Score=44.64 Aligned_cols=203 Identities=10% Similarity=0.087 Sum_probs=108.6
Q ss_pred CceeEEEEcCCCCEEEEEe------------CCCcEEEEeCCC--CeeE-EEEccC-----CCcCeEEEEEecCCCCC-E
Q 004739 20 GCVNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKLL-HSIETG-----HSANVFCTKFVPETSDE-L 78 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~------------~dg~i~vWd~~~--~~~~-~~~~~~-----h~~~V~~~~~s~~~~g~-~ 78 (732)
...-.+...|+|..+++++ .+|.|.++|+.+ ++.. ..+ .+ .......+.+.++.+|. +
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455777888886555542 689999999873 2221 122 22 23467888887742233 4
Q ss_pred EEEEE-C--CCcEEEEEcCCCCCCCCCCCCCCCceeeccc-cCceeEEEEecCCCcEEEEEe---CC-------------
Q 004739 79 VVSGA-G--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSAS---ED------------- 138 (732)
Q Consensus 79 l~s~~-~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~s~s---~d------------- 138 (732)
|+.+. . +.+|.+|++....... ..+..+.+. -...+.+.+.+++ .+.++.. .|
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~------~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCeEEEEEEECCCCEE------EEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCC
Confidence 54443 2 5678898887532211 123333322 2457889998854 6655543 11
Q ss_pred -CcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC
Q 004739 139 -GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML 217 (732)
Q Consensus 139 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~ 217 (732)
|.|..+|. ++ + ..+. ..-..-+.++|+|++..++++-+..+.|+.|++...
T Consensus 202 ~g~vyr~d~--~~-~-----------~~~~--------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 202 WSFVTYYSP--ND-V-----------RVVA--------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp CEEEEEECT--TC-C-----------EEEE--------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ccEEEEEEC--Ce-E-----------EEee--------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 22333332 11 0 0000 011245889999994344455556789999998742
Q ss_pred CCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC-CCCEEEEEecC-CeEEEEEC
Q 004739 218 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG-EHVYLMDV 277 (732)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~~~~~d-g~v~iwd~ 277 (732)
..+... +.+ .. ....-.+++.+ +|++.+++..+ +.|..|+.
T Consensus 254 g~l~~~----------~~~---~~------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 254 WTLTPL----------RVL---SF------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp SCEEEE----------EEE---EC------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CcEecC----------EEE---eC------CCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 211110 111 00 11367789999 59876656533 34444443
No 298
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.63 E-value=0.047 Score=60.93 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=95.3
Q ss_pred eeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-CcEEEEEcCCCCCC
Q 004739 22 VNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGR 99 (732)
Q Consensus 22 V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-g~i~vwd~~~~~~~ 99 (732)
...|++.+. ++++++-...+.|.+.++........+ .........|+++|.. +.++++-... +.|.+.++....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~-- 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-REQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD-- 530 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-CCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCC--
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-eCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCC--
Confidence 456788754 445555456788999997755433333 3333456788999874 3444443233 677777765321
Q ss_pred CCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcccccc
Q 004739 100 GLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA 178 (732)
Q Consensus 100 ~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (732)
...+ .......+.|+|+|+++.++++-+..+.|..+++..... ..+...
T Consensus 531 ---------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~~--------- 580 (699)
T 1n7d_A 531 ---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILED--------- 580 (699)
T ss_dssp ---------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECCC---------
T ss_pred ---------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEec---------
Confidence 1111 112345678999997778887777788899999864321 111110
Q ss_pred CCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCccc
Q 004739 179 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC 223 (732)
Q Consensus 179 ~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~ 223 (732)
........+|++.. ..++++....+.|..+|..+++.+..+
T Consensus 581 --~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 581 --EKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp --SSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred --CCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 00011223444544 346666667789999998776654444
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.47 E-value=0.95 Score=45.84 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=96.8
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCC---CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCC
Q 004739 27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH---SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD 103 (732)
Q Consensus 27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h---~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~ 103 (732)
.+.+|..|+.+- ++.||.-++......+.+...+ -..|..+..+|+ |.+|+..+ +..|.|-.+..+.......
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps--G~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS--GDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT--SSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCC--CCEEEEec-CCeEEEEEecCccccCccc
Confidence 345677677664 4778887877544333332222 236888999999 58888775 6789999988432111000
Q ss_pred C--CCCCceeecc------ccCceeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 104 N--AITPSALYQC------HTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 104 ~--~~~~~~~~~~------h~~~v~~l~~~p~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
. .....+.+.- ....|..+.|+|-+. ..|++-..|+.|++||+......+. .++...+
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-----------~L~k~~~- 171 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-----------VLNKPNN- 171 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-----------EESCCCS-
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-----------chhcccc-
Confidence 0 0000112211 246799999999643 4888999999999999987332110 1111100
Q ss_pred cccccCCCCCccceEEEEecCCCCCEEEEEe--CCCeEEEE
Q 004739 174 KRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLY 212 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~--~dg~v~iw 212 (732)
.+ ........|.+++|.++ +-.|...+ .+|.|+-.
T Consensus 172 --~f-g~d~~~~ev~S~~Fg~~-~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 --SF-GLDARVNDITDLEFSKD-GLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp --EE-ESCSSCCCEEEEEECTT-SSCEEEEECTTSCEEEEE
T ss_pred --cc-CCCcccceEEEEEEcCC-CcEEEEEecCCCCCEEEE
Confidence 01 11223357889999986 55555544 66666544
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.41 E-value=1 Score=47.20 Aligned_cols=175 Identities=13% Similarity=0.123 Sum_probs=96.8
Q ss_pred ceeEEEEcCC-C-CEEEEEeCCCcEEEEeCCCCeeEEEEccC--CCcCeEEEEE-------ecCCCCCEEEEEECCC-c-
Q 004739 21 CVNAISWNSK-G-SLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKF-------VPETSDELVVSGAGDA-E- 87 (732)
Q Consensus 21 ~V~~l~~s~d-g-~~lasg~~dg~i~vWd~~~~~~~~~~~~~--h~~~V~~~~~-------s~~~~g~~l~s~~~dg-~- 87 (732)
....|+|+|. + +++++-...+.|++.|+.++........+ .......++| +++ |+.|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCc
Confidence 3568999983 4 44444444567999998887766544211 1235799999 998 46555555443 2
Q ss_pred -----EEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECC-------CCCCCCCC
Q 004739 88 -----VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPPA 155 (732)
Q Consensus 88 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~-------~~~~~~~~ 155 (732)
|.+.+... .+..... .....+.. ......++++|+++.++++-..++.|..+|+. ++..-...
T Consensus 218 ~~~~~V~~i~r~~-~G~~~~~---~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 218 DESPSVYIIKRNA-DGTFDDR---SDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp GGEEEEEEEECCT-TSCCSTT---SCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred ccCceEEEEecCC-CCceeec---ccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 55555322 1111000 00012221 23456788999777888888888899999987 44420000
Q ss_pred CCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCE-EEEEeCCCeEEEEECC
Q 004739 156 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL-LLVGGSDAFARLYDRR 215 (732)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-l~tg~~dg~v~iwd~~ 215 (732)
..........++.. ......+.|+|+|+ ++. +++-.....|+.+|..
T Consensus 293 ~~~~~g~~~~l~~~------------~~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 293 VKNNPNTFKQLFTI------------ADPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp GGGCTTTEEEEEEC------------SSSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccceeEec------------CCCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence 00000000011111 01124578999999 664 5555667889887654
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.38 E-value=2.6 Score=42.29 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=60.1
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEc--cCCCcCeEEEEEecC---CCCCEEEEEECC-----C
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----A 86 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~--~~h~~~V~~~~~s~~---~~g~~l~s~~~d-----g 86 (732)
-..-..++|.|+|+++++ ..++.|++++ +++. +..+. .........|+|+|+ . +.++++-... +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCcc
Confidence 345678999999996665 5669999998 4432 22221 122456799999997 3 2444444432 5
Q ss_pred cEEEEEcCCCCCCCCCCCCCCC-ceeec---cccCceeEEEEecCCCcEEEEEe
Q 004739 87 EVRLFNLSRFSGRGLDDNAITP-SALYQ---CHTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 87 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~---~h~~~v~~l~~~p~~~~~l~s~s 136 (732)
.|..++....... ..+. +..+. +.......|+|.|++ .++++.+
T Consensus 106 ~v~r~~~~~~~~~-----~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGV-----LDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEE-----EEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred EEEEEEeCCCCcC-----ceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 6777776531100 0000 11122 111234689999966 6666543
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.81 E-value=0.63 Score=47.10 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=79.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------------eEEEEccC-----CCcCeEEEEEecCCC-CCEEEEE
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPETS-DELVVSG 82 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~------------~~~~~~~~-----h~~~V~~~~~s~~~~-g~~l~s~ 82 (732)
.|..+..||+|++||..+. ..|.|-.+..+. ..+.+.-+ ...+|..+.|+|-+. |..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6888999999999998865 579988876321 11222111 256799999999642 4589999
Q ss_pred ECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEe--CCCcEEEEE
Q 004739 83 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD 145 (732)
Q Consensus 83 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s--~dg~i~vwd 145 (732)
..|+.|++||+......+...++......+......|.+++|.+ ++-.|...+ +.|-|+-..
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence 99999999999963322210000001112222336788999988 445555544 677776554
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=94.62 E-value=3.1 Score=41.13 Aligned_cols=160 Identities=12% Similarity=0.106 Sum_probs=86.3
Q ss_pred ccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCC
Q 004739 17 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF 96 (732)
Q Consensus 17 ~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~ 96 (732)
++...+..+++.+++.+++.+...+..+-+|- .++.-..+.......+..+.+.++ +.. +.++.+|.+++.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~--g~~-~~~~~~G~~~~s~~D~- 234 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPD--GRL-WMIVNGGKIAFSDPDN- 234 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTT--SCE-EEEETTTEEEEEETTE-
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCC--CCE-EEEeCCceEEEecCCC-
Confidence 44567889999999988877654433444442 122211222345677899999887 354 4556788887764221
Q ss_pred CCCCCCCCCCCCceee-ccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 97 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
+... ..+..- ..+...+.++.+.+ ++.+++.+ .+|.| .+....++.- .
T Consensus 235 -G~tW-----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~tW---------------~------- 283 (327)
T 2xbg_A 235 -SENW-----GELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQTW---------------Q------- 283 (327)
T ss_dssp -EEEE-----CCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSSC---------------E-------
T ss_pred -CCee-----EeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCccc---------------E-------
Confidence 1100 001100 01223578888887 43666554 46766 4444444311 0
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEEC
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR 214 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~ 214 (732)
.+.........+.++.|.++ ..+++++.+|.|.-++-
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~--~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 284 QDVDVKKVPSNFYKILFFSP--DQGFILGQKGILLRYVT 320 (327)
T ss_dssp ECGGGTTSSSCCCEEEEEET--TEEEEECSTTEEEEECC
T ss_pred EcCccCCCCCCeEEEEEECC--CceEEEcCCceEEEEcC
Confidence 01100011224567777644 35777778898877764
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=94.40 E-value=0.47 Score=49.74 Aligned_cols=175 Identities=11% Similarity=0.067 Sum_probs=92.0
Q ss_pred eEEEEEecC-CCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeecc----ccCceeEEEE-------ecCCCcEE
Q 004739 65 VFCTKFVPE-TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAV-------EVGNPHVV 132 (732)
Q Consensus 65 V~~~~~s~~-~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~-------~p~~~~~l 132 (732)
...|+|+|. . ++++++-...+.|++.|+.... +..+.. .......|+| ++++..++
T Consensus 141 p~~la~dp~~~-~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly 208 (496)
T 3kya_A 141 NGRLAFDPLNK-DHLYICYDGHKAIQLIDLKNRM-----------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI 208 (496)
T ss_dssp EEEEEEETTEE-EEEEEEEETEEEEEEEETTTTE-----------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred CCEEEEccCCC-CEEEEEECCCCeEEEEECCCCE-----------EEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence 468999983 3 3455554445678888887532 233221 1235899999 99664355
Q ss_pred EEEeCCCc------EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC
Q 004739 133 WSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD 206 (732)
Q Consensus 133 ~s~s~dg~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d 206 (732)
++-..++. |.+.+........ .... ...+-. ......++++|+++.++++-..+
T Consensus 209 vad~~~~~~~~~~~V~~i~r~~~G~~~----~~~~-~~~v~~---------------~~~p~giavdp~~g~LYvtd~~~ 268 (496)
T 3kya_A 209 VAIDYDGKGDESPSVYIIKRNADGTFD----DRSD-IQLIAA---------------YKQCNGATIHPINGELYFNSYEK 268 (496)
T ss_dssp EEECCCTTGGGEEEEEEEECCTTSCCS----TTSC-EEEEEE---------------ESCCCCEEECTTTCCEEEEETTT
T ss_pred EEeCCCCCcccCceEEEEecCCCCcee----eccc-ceeecc---------------CCCceEEEEcCCCCeEEEEECCC
Confidence 44443322 5566532211100 0000 000100 01335678899767778888888
Q ss_pred CeEEEEECC-------CCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEe-cCCeEEEEECC
Q 004739 207 AFARLYDRR-------MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVN 278 (732)
Q Consensus 207 g~v~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~-~dg~v~iwd~~ 278 (732)
+.|..+|+. ++..-.... ..... -...+ ...+. ......++|+|+|++|+.+. ....|+.++..
T Consensus 269 g~V~r~d~~~~~~~~~tg~~~tp~~-~~~~g-~~~~l-----~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 269 GQVFRLDLVDYFKTIKNGGSWDPIV-KNNPN-TFKQL-----FTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEECHHHHHHHHHTTCCCCCBG-GGCTT-TEEEE-----EECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEecccccccccCceeecccc-ccccc-cccee-----EecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 999999987 443200000 00000 00000 00111 11357899999999766664 46788887765
Q ss_pred C
Q 004739 279 H 279 (732)
Q Consensus 279 ~ 279 (732)
.
T Consensus 341 g 341 (496)
T 3kya_A 341 E 341 (496)
T ss_dssp T
T ss_pred C
Confidence 4
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.03 E-value=4.8 Score=39.19 Aligned_cols=209 Identities=11% Similarity=0.141 Sum_probs=122.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
.-.+|..+.||-=. ..++.|+|+++.+.++.+ . ....|.-=+|-.. +.|+-.. +..|..|++....
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~-~-~~e~VvfWkWis~---~~L~lVT-~taVyHWs~~~~s------- 137 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES------- 137 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCEEEEEECSS---SEEEEEE-SSEEEEEESSTTC-------
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcce-e-cCCccEEEEecCC---CeEEEEc-CCcEEEEcccCCC-------
Confidence 34578777777655 578999999999999887 2 3467878888776 5666555 5689999997521
Q ss_pred CCCCceeecccc----CceeEEEEecCCCcEEE-EEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 105 AITPSALYQCHT----RRVKKLAVEVGNPHVVW-SAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 105 ~~~~~~~~~~h~----~~v~~l~~~p~~~~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.|.+.+..|. ..|.....+++. ++++ +|- -.|.+.+|..+.....
T Consensus 138 --~P~kvFdR~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--------------------- 193 (365)
T 2xzh_A 138 --QPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--------------------- 193 (365)
T ss_dssp --CCEEEEECCGGGTTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTEEE---------------------
T ss_pred --CCceeeecchhcccceEEEEEECCCC-CEEEEEeEeccCCccceeEEEEeecccccc---------------------
Confidence 3455555443 457777777755 4443 332 2367778887665311
Q ss_pred cccccCCCCCccceEEEEec--CCCCCEEEEEeC---CCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCc
Q 004739 174 KRSLADPPKQTLSLKSCDIS--STRPHLLLVGGS---DAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~--~~~~~~l~tg~~---dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
...+|......+.+. +....+++-+.. .+.++|.++... .....+.. ..+..+.| +....
T Consensus 194 -----~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k-----k~vdi~fp----pea~~ 259 (365)
T 2xzh_A 194 -----PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFP----PEAQN 259 (365)
T ss_dssp -----EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC-----EEEEECCC----TTCTT
T ss_pred -----eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc-----ccceeeCC----ccccC
Confidence 111222222222221 110112332222 258999998543 11111110 01111111 12233
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 286 (732)
+. .-++..++.-..++.-+.-|.|++||+.++.....-
T Consensus 260 DF-PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 260 DF-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp CC-EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred Cc-eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 43 557889998889999999999999999998654433
No 306
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.89 E-value=3 Score=41.63 Aligned_cols=163 Identities=11% Similarity=0.129 Sum_probs=87.2
Q ss_pred CeEEEEEecCCCCCEEEEE------------ECCCcEEEEEcCCCCCCCCCCCCCCCcee----eccccCceeEEEEecC
Q 004739 64 NVFCTKFVPETSDELVVSG------------AGDAEVRLFNLSRFSGRGLDDNAITPSAL----YQCHTRRVKKLAVEVG 127 (732)
Q Consensus 64 ~V~~~~~s~~~~g~~l~s~------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~~p~ 127 (732)
....+...|+ |..++++ ..+|.|.++|+.+...+. ..+.. +.........|.+.++
T Consensus 51 G~EDi~~~~~--G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~------~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 51 GSEDLEILPN--GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV------SELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp CCCEEEECTT--SEEEEEECCC-----------CCEEEEEETTSSSCCE------EECEEECSSCCGGGCCEEEEEEEEC
T ss_pred CcceeEEcCC--CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce------EEEEccCCCCCcCceeeeeeEEEEC
Confidence 3456777776 4444444 168999999998533221 11111 1112346677777663
Q ss_pred --CC-cEEEEEeC--CCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEE
Q 004739 128 --NP-HVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV 202 (732)
Q Consensus 128 --~~-~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~t 202 (732)
+. .++++-.. +..|.+|++...... ..+.....+ ..-...+.+.+.++ |.++++
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-----------~~~~~~~~g---------~~~~~pND~~v~~~-G~fyvt 181 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-----------LLHLKTIRH---------KLLPSVNDIVAVGP-EHFYAT 181 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTE-----------EEEEEEECC---------TTCSSEEEEEEEET-TEEEEE
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCE-----------EEEEecccc---------CCCCCCceEEEeCC-CCEEec
Confidence 32 24444333 457778877654310 111111001 11225788889988 666666
Q ss_pred EeC-----------------CCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEE
Q 004739 203 GGS-----------------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL 265 (732)
Q Consensus 203 g~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~ 265 (732)
... .|.|.-+|... ...+. .+- ...+.++|+||++.|+.
T Consensus 182 ~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~---~~~~~-------------------~~l--~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 182 NDHYFIDPYLKSWEMHLGLAWSFVTYYSPND---VRVVA-------------------EGF--DFANGINISPDGKYVYI 237 (355)
T ss_dssp ESCSCSSHHHHHHHHHTTCCCEEEEEECTTC---CEEEE-------------------EEE--SSEEEEEECTTSSEEEE
T ss_pred CCcEeCCcccccchhhccCCccEEEEEECCe---EEEee-------------------cCC--cccCcceECCCCCEEEE
Confidence 431 23444444421 11000 000 13688999999998887
Q ss_pred Eec-CCeEEEEECCC
Q 004739 266 SYS-GEHVYLMDVNH 279 (732)
Q Consensus 266 ~~~-dg~v~iwd~~~ 279 (732)
+.. .+.|+.|++..
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 754 78999999875
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.85 E-value=1.8 Score=42.27 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC-----cEEEEEcCCC
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg-----~i~vwd~~~~ 96 (732)
++.+++.|+.+ ..+.+||+.+.+....-.......-.++... + +.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCC
Confidence 56677777644 3588899887764432211111111222222 3 36777777653 4778887754
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.48 E-value=2.5 Score=41.12 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=52.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCe---eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCC
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~---~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~~ 96 (732)
++.+++.|+.+ ..+.+||+.+.+ ....-.......-.++... + +.+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-G--DMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-C--CEEEEEcccCCCcccceEEEEcCCCC
Confidence 56677777754 468999988765 3322111111111122222 3 3677777654 35788888754
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 150 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~ 150 (732)
.-.. +..+......- ++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 139 ~W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 139 QWSM--------LGDMQTAREGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EEEE--------EEECSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred eEEE--------CCCCCCCcccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 3211 11111111111 12222 44677777654 347777776543
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.36 E-value=7.8 Score=39.41 Aligned_cols=209 Identities=11% Similarity=0.141 Sum_probs=123.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCC
Q 004739 25 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN 104 (732)
Q Consensus 25 l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 104 (732)
.-.+|..+.||-=. ..++.|+|+++.+.++.+ . ....|.-=.|-.+ +.|+-.+ +..|..|++....
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~-~-~~e~VvfWkWis~---~~l~lVT-~taVyHWsi~~~s------- 136 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES------- 136 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEEEET---TEEEEEC-SSEEEEEESSSSC-------
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcce-e-cCCCceEEEecCC---CeEEEEc-CCeeEEecccCCC-------
Confidence 44677777777654 578999999999998887 2 3456777778766 4665554 5789999997421
Q ss_pred CCCCceeecccc----CceeEEEEecCCCcEEE-EEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 105 AITPSALYQCHT----RRVKKLAVEVGNPHVVW-SAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 105 ~~~~~~~~~~h~----~~v~~l~~~p~~~~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
.|++.+.-|. ..|.....+++. ++++ +|- -.|.+.+|..+.....
T Consensus 137 --~P~kvFdR~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--------------------- 192 (494)
T 1bpo_A 137 --QPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--------------------- 192 (494)
T ss_dssp --CCEEEEECCGGGTTCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCCEE---------------------
T ss_pred --CchhheecchhcccceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccccc---------------------
Confidence 3455555443 457777777755 5444 332 2367888887765411
Q ss_pred cccccCCCCCccceEEEEecCC--CCCEEEEEeC---CCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCc
Q 004739 174 KRSLADPPKQTLSLKSCDISST--RPHLLLVGGS---DAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRS 247 (732)
Q Consensus 174 ~~~~~~~~~~~~~v~~i~~~~~--~~~~l~tg~~---dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (732)
...+|......+.+..+ ...+++-+.. .+.++|.++... .....+.. ..+..+.| +....
T Consensus 193 -----~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k-----k~vdv~fp----pe~~~ 258 (494)
T 1bpo_A 193 -----PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK-----KAVDVFFP----PEAQN 258 (494)
T ss_dssp -----EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC-----EEEECCCC----TTSTT
T ss_pred -----hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc-----eeeeeeCC----ccccc
Confidence 11223322222222211 0123333333 378999998643 11111110 01111111 12233
Q ss_pred cccEEEEEEcCCCCEEEEEecCCeEEEEECCCCCCccee
Q 004739 248 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR 286 (732)
Q Consensus 248 ~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 286 (732)
+. ..++..++.-..++.-+.-|.|++||+.++.....-
T Consensus 259 DF-Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 259 DF-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp CC-EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred Cc-eeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 43 557899998889999999999999999997654433
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.22 E-value=4.1 Score=39.65 Aligned_cols=64 Identities=8% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC------CcEEEEEcCCC
Q 004739 30 KGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~d----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d------g~i~vwd~~~~ 96 (732)
++.+++.|+.+ ..+.++|+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-E--GKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 56677777754 5788999988764432211111111122222 3 3677777765 45888898864
No 311
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.97 E-value=7.2 Score=35.60 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=72.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe------eEEEEccCC--CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCC
Q 004739 31 GSLLISGSDDTHINVWSYSSRK------LLHSIETGH--SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 102 (732)
Q Consensus 31 g~~lasg~~dg~i~vWd~~~~~------~~~~~~~~h--~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~ 102 (732)
...|.+...| +|+.=....+. ...++ +. =..+..++|+|+ |.+.+. .+|.+.-.+..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i--G~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~---- 72 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI--GKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDN---- 72 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE--ESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTT----
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc--CccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCc----
Confidence 3456666666 66655444433 22233 22 246789999997 465555 677655544432111
Q ss_pred CCCCCCceeeccccCc--------eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCcc
Q 004739 103 DNAITPSALYQCHTRR--------VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK 174 (732)
Q Consensus 103 ~~~~~~~~~~~~h~~~--------v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (732)
..+.+-... -.++.|.|++ .+.++ .||.|.-++-.+.... -|--. +.
T Consensus 73 -------~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~-------------~Wl~~-a~- 127 (236)
T 1tl2_A 73 -------DNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD-------------NWIAR-AT- 127 (236)
T ss_dssp -------CCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC-------------CHHHH-SE-
T ss_pred -------ccccccccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC-------------ceecc-cc-
Confidence 111111222 3788899855 66655 5698887774332210 00000 00
Q ss_pred ccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEE
Q 004739 175 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL 211 (732)
Q Consensus 175 ~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~i 211 (732)
.+ ....-..+..+.|.|+ |.+.++. |+.++-
T Consensus 128 -~v--g~~gw~~~~~lff~p~-G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 128 -EV--GSGGWSGFKFLFFHPN-GYLYAVH--GQQFYK 158 (236)
T ss_dssp -EE--ECSSGGGEEEEEECTT-SCEEEEE--TTEEEE
T ss_pred -Ee--ccCCCCceEEEEECCC-ceEEEEe--CCcEEe
Confidence 00 0011136789999999 7666555 777543
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.24 E-value=12 Score=36.54 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=35.9
Q ss_pred EEcCCCCEEEEEeC----C-------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC--------C
Q 004739 26 SWNSKGSLLISGSD----D-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------A 86 (732)
Q Consensus 26 ~~s~dg~~lasg~~----d-------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d--------g 86 (732)
+...++.+++.|+. + ..+.+||+.+.+....-.......-.++... + +.+++.|+.+ .
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence 33457788888873 1 1277889888764322100111111122222 3 3667777632 4
Q ss_pred cEEEEEcCCC
Q 004739 87 EVRLFNLSRF 96 (732)
Q Consensus 87 ~i~vwd~~~~ 96 (732)
.+.+||+.+.
T Consensus 118 ~~~~~d~~~~ 127 (315)
T 4asc_A 118 SVMCYDRLSF 127 (315)
T ss_dssp CEEEEETTTT
T ss_pred eEEEECCCCC
Confidence 5888888764
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.13 E-value=6.4 Score=39.35 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=43.3
Q ss_pred CceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeeEEEE------ccCCCcCeEEEEEecC---CCCCEEEEEEC-----
Q 004739 20 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSI------ETGHSANVFCTKFVPE---TSDELVVSGAG----- 84 (732)
Q Consensus 20 ~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~~~~~~~------~~~h~~~V~~~~~s~~---~~g~~l~s~~~----- 84 (732)
..-..|+|.|+|+ +++ +...|.|++++.. ++....+ ..........|+|+|+ . +.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCC
Confidence 4567999999999 555 4567999999853 3321111 0122345789999995 2 344444333
Q ss_pred --CCcEEEEEcC
Q 004739 85 --DAEVRLFNLS 94 (732)
Q Consensus 85 --dg~i~vwd~~ 94 (732)
...|..|++.
T Consensus 95 ~~~~~v~r~~~~ 106 (353)
T 2g8s_A 95 KAGTAVGYGRLS 106 (353)
T ss_dssp CEEEEEEEEEEC
T ss_pred CceeEEEEEEEC
Confidence 2346566654
No 314
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.90 E-value=12 Score=36.50 Aligned_cols=144 Identities=13% Similarity=0.175 Sum_probs=85.1
Q ss_pred chhhhhhccccEeeecc----CCceeEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCeeEEEEccCCCcCeEEEEE
Q 004739 2 HSSLVRRLSQERELEGH----QGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKF 70 (732)
Q Consensus 2 ~~~~~~~~~~~~~l~~h----~~~V~~l~~s~dg~~lasg~~-------dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~ 70 (732)
||++.....+++.+.-| ...|.....+++.++++..+- .|.+.+|..+.+.. +.+ .+|.+.-..+.+
T Consensus 130 HWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~i-eGhaa~F~~~~~ 207 (365)
T 2xzh_A 130 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI-EGHAASFAQFKM 207 (365)
T ss_dssp EEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEE-CCSEEEEEEECC
T ss_pred EEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-cee-eeeeeeeEEEec
Confidence 45554455677777665 357777888899998775442 36788998776533 233 688765544433
Q ss_pred ecCCCC-CEEEEEEC---CCcEEEEEcCCC-CCCCCCCCCCCCceee---ccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004739 71 VPETSD-ELVVSGAG---DAEVRLFNLSRF-SGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 142 (732)
Q Consensus 71 s~~~~g-~~l~s~~~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 142 (732)
.-+... .+++-+.. -+.++|-++... .+... ...+.+..+ ..-.+-..++..++.. .++...++-|.|+
T Consensus 208 ~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~--f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ih 284 (365)
T 2xzh_A 208 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP--FPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIH 284 (365)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC--CCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC--cccccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEE
Confidence 322111 23333332 258999998653 12110 000001111 1224556677888744 6777888999999
Q ss_pred EEECCCCC
Q 004739 143 QHDFRQGS 150 (732)
Q Consensus 143 vwd~~~~~ 150 (732)
+||++++.
T Consensus 285 lyDleTgt 292 (365)
T 2xzh_A 285 LYDLETGT 292 (365)
T ss_dssp EEETTTCC
T ss_pred EEEcccCc
Confidence 99999987
No 315
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.75 E-value=7 Score=40.64 Aligned_cols=68 Identities=9% Similarity=-0.003 Sum_probs=37.9
Q ss_pred CCEEEEecCCCcEEEEEcCc-cc-EE---EEEecCcccEEEEeecCCCC-eEEEecCCCcEE------EEcCCCCCCccc
Q 004739 608 GDYIASGSDDGRWFIWEKQT-GR-LI---KMLLGDEAVVNCVQCHPFDC-VVATSGIDNTIK------IWTPSASVPSIV 675 (732)
Q Consensus 608 g~~lasgs~Dg~i~iWd~~t-g~-~~---~~l~gH~~~V~~v~fsp~~~-~l~S~s~D~~i~------vW~~~~~~~~~~ 675 (732)
|++++..-..+.|....++. |. .. ..+..-..+++.|++.|||. ++++.+..|.|. +|.+.....+..
T Consensus 369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~~~~~~~~~~~~~~~~i~~ 448 (454)
T 1cru_A 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQKDDGSVTNTLENPGSLIK 448 (454)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEECTTSCEECCCSSTTCEEE
T ss_pred CcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCccCCCceeEeccCCCceEE
Confidence 44444444445555555442 22 11 22222236999999999997 666666556543 676655544443
No 316
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=90.67 E-value=7.3 Score=38.49 Aligned_cols=158 Identities=9% Similarity=0.100 Sum_probs=86.5
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecC---CCc---E-EEEEeC--CCcEEEEECC
Q 004739 77 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPH---V-VWSASE--DGTLRQHDFR 147 (732)
Q Consensus 77 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~---~~~---~-l~s~s~--dg~i~vwd~~ 147 (732)
.+++.....+-+.+||+.. +.++.+.. ..++.+..-|. ++. + +++.-. +++|.+|++.
T Consensus 41 s~ii~t~k~~gL~Vydl~G-----------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDG-----------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp CEEEEEETTTEEEEEETTS-----------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred cEEEEEcCCCCEEEEcCCC-----------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 4677777888999999952 22455542 56777777661 111 2 333333 5789999774
Q ss_pred CCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEe--cCCCCC-EEEEEeCCCeEEEEECCCCCCCcccc
Q 004739 148 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPH-LLLVGGSDAFARLYDRRMLPPLTSCQ 224 (732)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~ 224 (732)
..... +-...... ..+. .....+..+++ +|..+. ++++...+|.+..|++.....-. .
T Consensus 108 p~~~~-------------l~~i~~~~-~pv~---t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~- 168 (355)
T 3amr_A 108 GKNGT-------------LQSMTDPD-HPIA---TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-I- 168 (355)
T ss_dssp TTTCC-------------EEECSCTT-SCEE---CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-E-
T ss_pred CCCCc-------------eeeccccc-cCcC---CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-c-
Confidence 22110 00000000 0000 01135566666 775443 67788889999999984321000 0
Q ss_pred cCCCCCCccccccccccccCCCccccEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 004739 225 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~~~~~dg~v~iwd~~~ 279 (732)
..+.++.+. . ...+-.++..+....|+.+-.+..|..++...
T Consensus 169 ----~~~lVR~f~------l---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p 210 (355)
T 3amr_A 169 ----SGKKVRAFK------M---NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEP 210 (355)
T ss_dssp ----EEEEEEEEE------C---SSCEEEEEEETTTTEEEEEETTTEEEEEECST
T ss_pred ----cceEEEEec------C---CCCcceEEEcCCCCeEEEecccceEEEEeCCc
Confidence 001112221 0 11477899999888999999986666666443
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.64 E-value=6.1 Score=38.46 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=52.2
Q ss_pred CCCEEEEEeC----C-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCC
Q 004739 30 KGSLLISGSD----D-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSR 95 (732)
Q Consensus 30 dg~~lasg~~----d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~ 95 (732)
++.+++.|+. + ..+.++|+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~ 146 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-D--GHIYAVGGSHGCIHHNSVERYEPER 146 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-T--TEEEEECCEETTEECCCEEEEETTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-C--CEEEEEcCCCCCcccccEEEECCCC
Confidence 5666777665 2 4688899887764332110111111122222 3 3677776643 3588888876
Q ss_pred CCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004739 96 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 150 (732)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~ 150 (732)
..-.. +..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 147 ~~W~~--------~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 147 DEWHL--------VAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp TEEEE--------CCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CeEeE--------CCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 43211 1111111111112222 44677777654 347777776543
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.55 E-value=13 Score=43.91 Aligned_cols=210 Identities=10% Similarity=0.125 Sum_probs=114.7
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCC
Q 004739 27 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI 106 (732)
Q Consensus 27 ~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 106 (732)
.+|..+.||-=. ..++.|+|+++.+.++.+ .....|.-=.|-.. +.|+-.+ +..|..|++...+
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~--~~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~s--------- 136 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAH--TMTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES--------- 136 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhccc--ccCCCceEEEecCC---CeeEEEc-CCeEEEeccCCCC---------
Confidence 456666666543 578999999998888776 23456777777665 4555544 5679999996421
Q ss_pred CCceeeccc----cCceeEEEEecCCCcEEE-EEe------CCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccc
Q 004739 107 TPSALYQCH----TRRVKKLAVEVGNPHVVW-SAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 175 (732)
Q Consensus 107 ~~~~~~~~h----~~~v~~l~~~p~~~~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (732)
.|++.+.-| ...|..-..+++. ++++ +|- -.|.+.+|..+.... ....+|..+-..+.
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~iegha~~F~~~~-------- 205 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPIEGHAASFAQFK-------- 205 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeecccccc--hhhhHhHhhhheec--------
Confidence 334444444 3567777777755 4444 332 347788888766542 11222221110000
Q ss_pred cccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCC-CCCcccccCCCCCCccccccccccccCCCccccEEEE
Q 004739 176 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV 254 (732)
Q Consensus 176 ~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 254 (732)
.....+...+.+.+.-. ...+.++|.++... .....+... .+..+.|. ....+. ..++
T Consensus 206 --~~~~~~~~~l~~f~~~~---------~~g~kLhi~Ei~~~~~~~~~f~kk-----~~~~~~~~----~~~~Df-pv~~ 264 (1630)
T 1xi4_A 206 --MEGNAEESTLFCFAVRG---------QAGGKLHIIEVGTPPTGNQPFPKK-----AVDVFFPP----EAQNDF-PVAM 264 (1630)
T ss_pred --cCCCCCCceEEEEEEec---------CCCceEEEEecCCCccCCCCCccc-----cccccCCc----ccccCc-ceEE
Confidence 00000111122222211 11368999998643 111111110 11111111 222333 4568
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCcc
Q 004739 255 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRA 284 (732)
Q Consensus 255 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 284 (732)
..++.-..++.-+.-|.|++||+.++....
T Consensus 265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EeccccCEEEEEecCceEEEEecccchhhh
Confidence 888888889999999999999999976443
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.23 E-value=8 Score=37.60 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCCEEEEEeC----CCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC----C-----CcEEEEEcCCC
Q 004739 30 KGSLLISGSD----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----D-----AEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~----dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~----d-----g~i~vwd~~~~ 96 (732)
++.+++.|+. -..+.++|+.+.+....-.......-.++... + +.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-G--GLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T--TEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-C--CEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 5667777763 24689999888764432100111111122222 3 366777665 2 45888888764
Q ss_pred C
Q 004739 97 S 97 (732)
Q Consensus 97 ~ 97 (732)
.
T Consensus 101 ~ 101 (308)
T 1zgk_A 101 Q 101 (308)
T ss_dssp E
T ss_pred e
Confidence 3
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=90.00 E-value=17 Score=36.29 Aligned_cols=111 Identities=12% Similarity=0.022 Sum_probs=60.5
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-eEEEEc--cCCCcCeEEEEEecC---CCCCEEEEEEC---C----
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D---- 85 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~-~~~~~~--~~h~~~V~~~~~s~~---~~g~~l~s~~~---d---- 85 (732)
-..-..|+|.|+|+++++ ..++.|+++| .+++ .+..+. .........|+|+|+ . +.++++-.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcc
Confidence 345678999999985555 5569999997 4454 222221 122356889999996 3 344444432 3
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCc-eeec-cccCceeEEEEecCCCcEEEEEe
Q 004739 86 AEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSAS 136 (732)
Q Consensus 86 g~i~vwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~p~~~~~l~s~s 136 (732)
..|..|+......... ..+.+ ..+. ........|+|.|++ .++++.+
T Consensus 105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence 5677777653211100 00001 1111 111124678999965 6666544
No 321
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.86 E-value=17 Score=35.29 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=35.3
Q ss_pred EcCCCCEEEEEeC----CC-------cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-------CcE
Q 004739 27 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV 88 (732)
Q Consensus 27 ~s~dg~~lasg~~----dg-------~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-------g~i 88 (732)
...++.+++.|+. ++ .+.++|+.+.+....-.......-.++... + +.+++.|+.+ ..+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence 3456778888873 12 177888887764432101111111222222 3 3677777754 247
Q ss_pred EEEEcCCC
Q 004739 89 RLFNLSRF 96 (732)
Q Consensus 89 ~vwd~~~~ 96 (732)
.+||+.+.
T Consensus 130 ~~yd~~~~ 137 (318)
T 2woz_A 130 LCYDPVAA 137 (318)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 78888754
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.64 E-value=5.8 Score=38.44 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=53.5
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-------CcEEEEEcCCCC
Q 004739 30 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS 97 (732)
Q Consensus 30 dg~~lasg~~dg-----~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-------g~i~vwd~~~~~ 97 (732)
++++++.|+.++ .+.+||+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 566777777543 577889887764432211111111222222 3 3666766543 348888887643
Q ss_pred CCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004739 98 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 150 (732)
Q Consensus 98 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~ 150 (732)
-.. +..+....... ++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 185 W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 WTY--------IAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEE--------ECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEE--------CCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 211 11111111111 22222 44777777754 357788876653
No 323
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=88.58 E-value=16 Score=36.23 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=45.8
Q ss_pred CcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCCCCCCCCCCce----eeccccCceeEEEEecC---CCcEEEE
Q 004739 62 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVWS 134 (732)
Q Consensus 62 ~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~l~~~p~---~~~~l~s 134 (732)
-.....|+|.|+ |.++++--..|.|++++...+... .+. .+.........|+++|+ ++.+.++
T Consensus 31 L~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~~--------~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 31 LNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRKT--------ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp CSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCEE--------EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcEe--------eecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 345689999999 577776554899998876532211 111 11223456789999995 3344443
Q ss_pred Ee--CCCcEEEEECCC
Q 004739 135 AS--EDGTLRQHDFRQ 148 (732)
Q Consensus 135 ~s--~dg~i~vwd~~~ 148 (732)
-+ .++.|.-|.+..
T Consensus 101 yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 101 FTSASDNRIVRMLYDE 116 (347)
T ss_dssp EECSSSEEEEEEEBCT
T ss_pred EecCCCCEEEEEEeCC
Confidence 22 345566666554
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.14 E-value=13 Score=37.05 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=34.6
Q ss_pred CCCEEEEecCCCcEEEEEcCcccEEEE--Ee-cCcccEEEEeecCCCCeEEEe
Q 004739 607 RGDYIASGSDDGRWFIWEKQTGRLIKM--LL-GDEAVVNCVQCHPFDCVVATS 656 (732)
Q Consensus 607 dg~~lasgs~Dg~i~iWd~~tg~~~~~--l~-gH~~~V~~v~fsp~~~~l~S~ 656 (732)
+|+++++.-..+.|...++..++.+.. +. +-...+..|++.|||.+.++.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 577777777777787777776654432 22 223589999999999966643
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=87.96 E-value=25 Score=35.77 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred chhhhhhccccEeeecc----CCceeEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE
Q 004739 2 HSSLVRRLSQERELEGH----QGCVNAISWNSKGSLLISGS-------DDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70 (732)
Q Consensus 2 ~~~~~~~~~~~~~l~~h----~~~V~~l~~s~dg~~lasg~-------~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~ 70 (732)
||++.....+++.+.-| ...|..-..+++.++++..| -.|.+.+|..+.+.. ..+ .+|.+....+..
T Consensus 129 HWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~i-eGhaa~F~~~~~ 206 (494)
T 1bpo_A 129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI-EGHAASFAQFKM 206 (494)
T ss_dssp EEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEE-CCSEEEEEEEEC
T ss_pred EecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chh-eeeeeeeEEEec
Confidence 55554455677777665 35777788889999877543 246788998776533 234 688766555544
Q ss_pred ecCCCC-CEEEEEECC---CcEEEEEcCCC-CCCCCCCCCCCCce---eeccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004739 71 VPETSD-ELVVSGAGD---AEVRLFNLSRF-SGRGLDDNAITPSA---LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 142 (732)
Q Consensus 71 s~~~~g-~~l~s~~~d---g~i~vwd~~~~-~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 142 (732)
.-+... .+++-+... +.++|-++... .+... ...+.+. .-..-.+-..++..++.. .++....+-|.|+
T Consensus 207 ~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~--f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~ 283 (494)
T 1bpo_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP--FPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIH 283 (494)
T ss_dssp TTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC--CCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC--ccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEE
Confidence 322101 234444332 78999998653 12110 0000011 111234556678888855 6777888999999
Q ss_pred EEECCCCC
Q 004739 143 QHDFRQGS 150 (732)
Q Consensus 143 vwd~~~~~ 150 (732)
+||+.++.
T Consensus 284 lyDleTgt 291 (494)
T 1bpo_A 284 LYDLETGT 291 (494)
T ss_dssp EEETTTCC
T ss_pred EEecccce
Confidence 99999987
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=87.26 E-value=10 Score=36.57 Aligned_cols=107 Identities=11% Similarity=0.051 Sum_probs=54.3
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECC-----CcEEEEEcCCCCCC
Q 004739 30 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR 99 (732)
Q Consensus 30 dg~~lasg~~d-----g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d-----g~i~vwd~~~~~~~ 99 (732)
++++++.|+.+ ..+.++|+.+.+....-.......-.++... + +.+++.|+.+ ..+.+||+.+..-.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 188 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGHWT 188 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence 56677777643 3688899887764332211111111122222 3 3677777654 45888898764321
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGS 150 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~ 150 (732)
. +..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 189 ~--------~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 189 N--------VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp E--------ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred e--------CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 1 1111111111112222 44777777764 357888877654
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.99 E-value=8.8 Score=37.20 Aligned_cols=148 Identities=7% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC---------CCcEEEEEcC
Q 004739 30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLS 94 (732)
Q Consensus 30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~---------dg~i~vwd~~ 94 (732)
++++++.|+.+ ..+.+||+.+.+....-.......-.++... + +.+++.|+. -..+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-N--GLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-C--CEEEEECCCCCCCCcccccceEEEeCCC
Confidence 56777777754 4688999988764432111111111122222 3 366666653 3458889988
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCCCCCCCCCCcccceEEeec
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQECRNILLDL 169 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 169 (732)
+..-.. +..+...... .++... ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 178 ~~~W~~--------~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W------------------ 228 (306)
T 3ii7_A 178 TETWTE--------LCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW------------------ 228 (306)
T ss_dssp TTEEEE--------ECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEE------------------
T ss_pred CCeEEE--------CCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcE------------------
Confidence 643211 1111111111 122222 44677776654 3577888766531
Q ss_pred cCCccccccCCCCCccceEEEEecCCCCCEEEEEeCC-----CeEEEEECCCC
Q 004739 170 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRML 217 (732)
Q Consensus 170 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~d-----g~v~iwd~~~~ 217 (732)
..+...+........+.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 229 -----~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 229 -----KMVSPMPWKGVTVKCAAV--G-SIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp -----EECCCCSCCBSCCEEEEE--T-TEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred -----EECCCCCCCccceeEEEE--C-CEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 111111212222233333 2 6688888754 56888998764
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=86.44 E-value=8.8 Score=38.07 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=67.6
Q ss_pred cEeeeccCCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeE--EEEc---cCCCcCeEEEEEecC--CCCCEEEEEE-
Q 004739 12 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIE---TGHSANVFCTKFVPE--TSDELVVSGA- 83 (732)
Q Consensus 12 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~--~~~~---~~h~~~V~~~~~s~~--~~g~~l~s~~- 83 (732)
+..+...-..-..|+|.|||+++++--..|.|++++..+++.. ..+. .........|+|+|+ .++.+.++-+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3444444566789999999998777655899999987665432 2221 123566899999995 1134444322
Q ss_pred -CCCcEEEEEcCCCCCCCCCCCCCCCc-eeec-cccCceeEEEEecCCCcEEEEEeCCC
Q 004739 84 -GDAEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSASEDG 139 (732)
Q Consensus 84 -~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l~~~p~~~~~l~s~s~dg 139 (732)
.++.|.-|.+.............+.+ ..+. .....-..|+|.|++ .++++.+..+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~ 161 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESG 161 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCC
Confidence 34455555554321100000001111 1111 111134568888855 6666655443
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.26 E-value=34 Score=35.43 Aligned_cols=114 Identities=9% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee--EEEEcc-----CCCcCeEEEEEecC---CCCCEEEEEEC----
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIET-----GHSANVFCTKFVPE---TSDELVVSGAG---- 84 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~--~~~~~~-----~h~~~V~~~~~s~~---~~g~~l~s~~~---- 84 (732)
-..-..|+|.|+|+++++-...+.|++++..+++. +..+.. ........|+|+|+ . +.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccccC
Confidence 34566999999999777654445788888655543 222311 12456789999994 2 344444432
Q ss_pred --------CCcEEEEEcCCCCCCCCCCCCCCCce-eec-cccCceeEEEEecCCCcEEEEEeC
Q 004739 85 --------DAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASE 137 (732)
Q Consensus 85 --------dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~v~~l~~~p~~~~~l~s~s~ 137 (732)
...|.-|++........ ..+.+. .+. ........|+|.|++ .++++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 12455555432111100 000111 111 112246889999966 66666554
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=86.11 E-value=2.2 Score=38.94 Aligned_cols=108 Identities=10% Similarity=-0.041 Sum_probs=60.8
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCee------EEEEc-cCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 92 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~------~~~~~-~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd 92 (732)
..+..++|+|+|.+.++ .+|.+.-.+..+.+. -..+= .+-.. -.++.|.|+ |.+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~--G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPN--GYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTT--SCEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCC--CCEEEe--CCCEEEEeC
Confidence 37789999999997777 567766666544211 11110 01111 478899998 466655 569887776
Q ss_pred cCCCCCCCCCCCCCCCceee--ccccCceeEEEEecCCCcEEEEEeCCCcEE
Q 004739 93 LSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLR 142 (732)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~ 142 (732)
..+...... .-.... .+-=..+..|.+.|++ .+.+.. |+.+.
T Consensus 114 pP~~~~~~W-----l~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly 157 (236)
T 1tl2_A 114 PPQSDTDNW-----IARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY 157 (236)
T ss_dssp CCCSTTCCH-----HHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred CCcCCCCce-----eccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence 543221110 000011 1111467899999955 665554 77754
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=84.57 E-value=2.5 Score=41.77 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=62.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEe--cCCCCCEEEEE-ECCCcEEEEEcCCCCCCCCCCCCCCC
Q 004739 32 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV--PETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITP 108 (732)
Q Consensus 32 ~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s--~~~~g~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~ 108 (732)
.+++.++.||.|.-.|..+|+.+.++......++....-. +.. +..++.. ..||.|..++..++..+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~-------- 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKL-------- 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEE--------
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEe--------
Confidence 4688899999999999999999998843311233322100 111 2333333 578999888876531110
Q ss_pred ceeecc--ccCceeE---EEE-ec---CCCcEEEEEeCCCcEEEEECCCCC
Q 004739 109 SALYQC--HTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGS 150 (732)
Q Consensus 109 ~~~~~~--h~~~v~~---l~~-~p---~~~~~l~s~s~dg~i~vwd~~~~~ 150 (732)
...... ...++.. ... .+ ..+..+++++.+|.+...|+.+++
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 000000 1111111 000 00 023577899999999999999997
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=84.29 E-value=31 Score=33.35 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=32.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC----C-------CcEEEEEcCCC
Q 004739 33 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----D-------AEVRLFNLSRF 96 (732)
Q Consensus 33 ~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~----d-------g~i~vwd~~~~ 96 (732)
+++.|+ ..+.+||+.+++....-...............+ +.+++.|+. + ..+.+||+.+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 77 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE--NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT--CCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC--CEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence 445565 569999999887543221111122222222334 477777873 1 12677888754
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=83.52 E-value=37 Score=33.63 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=36.4
Q ss_pred CCceeEEEEcCC---CCEEEEE-eCC-----CcEEEEeCCCCe-----eEE-EEc--cCCCcCeEEEEEecCCCCCEEEE
Q 004739 19 QGCVNAISWNSK---GSLLISG-SDD-----THINVWSYSSRK-----LLH-SIE--TGHSANVFCTKFVPETSDELVVS 81 (732)
Q Consensus 19 ~~~V~~l~~s~d---g~~lasg-~~d-----g~i~vWd~~~~~-----~~~-~~~--~~h~~~V~~~~~s~~~~g~~l~s 81 (732)
......|+|+|+ +..|..+ ... +.|..++...+. .+. .+. .+.......++|.|+ |.++++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence 456789999998 4444433 322 568888876431 222 231 111123468999998 466666
Q ss_pred EE
Q 004739 82 GA 83 (732)
Q Consensus 82 ~~ 83 (732)
.+
T Consensus 152 ~G 153 (352)
T 2ism_A 152 TG 153 (352)
T ss_dssp CC
T ss_pred EC
Confidence 43
No 334
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.18 E-value=20 Score=39.55 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=57.4
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCeeEEEE-c-----cCCCcCeEEEEEec-CCCCCEEEEEECCC------cEEEE
Q 004739 29 SKGSLLISGSDD----THINVWSYSSRKLLHSI-E-----TGHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF 91 (732)
Q Consensus 29 ~dg~~lasg~~d----g~i~vWd~~~~~~~~~~-~-----~~h~~~V~~~~~s~-~~~g~~l~s~~~dg------~i~vw 91 (732)
.++..++.||.+ ..+.+||+.+++....- . ......-.++...+ + +.+++.|+.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence 456777777753 46888998877644322 1 01111112333332 4 47777777543 47788
Q ss_pred EcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC--cEEEEECCCCC
Q 004739 92 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGS 150 (732)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg--~i~vwd~~~~~ 150 (732)
|+.+..-.. +..+..-.. -.+++... ++.+++.|+.++ .+.+||+.+..
T Consensus 474 d~~t~~W~~--------~~~~p~~R~-~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 474 DMKTREWSM--------IKSLSHTRF-RHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp ETTTTEEEE--------CCCCSBCCB-SCEEEECT-TSCEEEECCBCSSCSEEEEETTTTE
T ss_pred eCCCCcEEE--------CCCCCCCcc-cceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc
Confidence 887633211 111111111 11222222 447777877654 68888887754
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=80.79 E-value=20 Score=34.87 Aligned_cols=107 Identities=8% Similarity=0.067 Sum_probs=52.1
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEEC------CCcEEEEEcCCC
Q 004739 30 KGSLLISGSDD-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRF 96 (732)
Q Consensus 30 dg~~lasg~~d-------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~------dg~i~vwd~~~~ 96 (732)
++++++.|+.+ ..+.++|+.+.+....-.......-.++.. .+ +.+++.|+. -..+.+||+.+.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~ 185 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN--GMIYCLGGKTDDKKCTNRVFIYNPKKG 185 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET--TEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC--CEEEEEcCCCCCCCccceEEEEcCCCC
Confidence 56677777753 357888988776443210011111112222 23 366676654 235888998864
Q ss_pred CCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCC-----cEEEEECCCCC
Q 004739 97 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGS 150 (732)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg-----~i~vwd~~~~~ 150 (732)
.-.. +..+...... .+++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 186 ~W~~--------~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 186 DWKD--------LAPMKTPRSM-FGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEE--------ECCCSSCCBS-CEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEE--------CCCCCCCccc-ceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 3211 1111111111 122222 447777776542 46678876654
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=78.76 E-value=28 Score=34.44 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=28.2
Q ss_pred CCCEEEEEeC-C---------CcEEEEeCCCCeeEEEEccC-CCcCeEEEEEecCCCCCEEEEEECC
Q 004739 30 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 30 dg~~lasg~~-d---------g~i~vWd~~~~~~~~~~~~~-h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
++++++.|+. + ..+.+||+.+.+....-... ....-.++.. .+ +.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HN--GKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ET--TEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-EC--CEEEEEeCcC
Confidence 5667777765 2 46889999887644322111 1111112222 33 3777788754
No 337
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.48 E-value=23 Score=36.78 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=60.8
Q ss_pred CceeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC---eeEEEEc----c----CCCcCeEEEEEecC--CCCCEEEEEECC
Q 004739 20 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSR---KLLHSIE----T----GHSANVFCTKFVPE--TSDELVVSGAGD 85 (732)
Q Consensus 20 ~~V~~l~~s~dg~-~lasg~~dg~i~vWd~~~~---~~~~~~~----~----~h~~~V~~~~~s~~--~~g~~l~s~~~d 85 (732)
..-..|+|.|||. .|+++...|.|++++.... ..+..+. . ........|+|+|+ .++.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456899999996 4555667899999975422 1222221 1 11456889999995 112344443321
Q ss_pred ------------CcEEEEEcCCCCCCCCCCCCCCCceeec--cccCceeEEEEecCCCcEEEEEeCCC
Q 004739 86 ------------AEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDG 139 (732)
Q Consensus 86 ------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~s~s~dg 139 (732)
..|.-|.+.............+.+..+. .....-..|+|.|++ .++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCCC
Confidence 1344455543211111000111122221 112235789999965 6666666543
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=73.00 E-value=46 Score=39.60 Aligned_cols=148 Identities=13% Similarity=0.154 Sum_probs=83.1
Q ss_pred chhhhhhccccEeeecc----CCceeEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCeeEEEEccCCCcCeEEEEE
Q 004739 2 HSSLVRRLSQERELEGH----QGCVNAISWNSKGSLLISGS-------DDTHINVWSYSSRKLLHSIETGHSANVFCTKF 70 (732)
Q Consensus 2 ~~~~~~~~~~~~~l~~h----~~~V~~l~~s~dg~~lasg~-------~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~ 70 (732)
||++.....+++.+.-| ...|..-..+++.++++..| -.|.+.+|.++.+.. ..+ .||.+....+..
T Consensus 129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~i-egha~~F~~~~~ 206 (1630)
T 1xi4_A 129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPI-EGHAASFAQFKM 206 (1630)
T ss_pred EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhh-hHhHhhhheecc
Confidence 45554445566666655 56788888889999877543 247788888765432 122 567655544444
Q ss_pred ecCCCC-CEEEEEEC---CCcEEEEEcCCC-CCCCC-CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEE
Q 004739 71 VPETSD-ELVVSGAG---DAEVRLFNLSRF-SGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH 144 (732)
Q Consensus 71 s~~~~g-~~l~s~~~---dg~i~vwd~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vw 144 (732)
...... .+++-+.. .+.++|-++... .+... ..........-..-.+-..++..++.. .++...+.-|.|.++
T Consensus 207 ~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 207 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLY 285 (1630)
T ss_pred CCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEE
Confidence 321111 23332222 268899988653 22110 000000001111223445567777744 567777888999999
Q ss_pred ECCCCCCC
Q 004739 145 DFRQGSSC 152 (732)
Q Consensus 145 d~~~~~~~ 152 (732)
|+.++..+
T Consensus 286 d~~t~~~i 293 (1630)
T 1xi4_A 286 DLETGTCI 293 (1630)
T ss_pred ecccchhh
Confidence 99998754
No 339
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=70.34 E-value=87 Score=30.90 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=37.0
Q ss_pred ceEEEEec-------CCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcC
Q 004739 186 SLKSCDIS-------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP 258 (732)
Q Consensus 186 ~v~~i~~~-------~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 258 (732)
....+.|. .+ +.++++....+.|...++......... ..+. .+. ...+..+++.|
T Consensus 260 ap~G~~~y~g~~fp~~~-G~l~v~~~~~~~v~~~~~~~~g~~~~~----------~~~~------~~~-~~rp~~v~~~p 321 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLR-GWLLIACLRGSMLAAVNFGDNMEVRKI----------STFF------KNV-FGRLRDVVIDD 321 (354)
T ss_dssp CEEEEEECCSSSCGGGT-TEEEEEETTTTEEEEEEECGGGCEEEE----------EEEC------TTT-SCCEEEEEECT
T ss_pred CCcceEEECCCCCcccC-CcEEEEEcCCCEEEEEEECCCCcccce----------eeec------cCC-CCCeeEEEECC
Confidence 56778883 33 667776666778888887643111000 0110 111 12488999999
Q ss_pred CCCEEEEEe
Q 004739 259 NGEEVLLSY 267 (732)
Q Consensus 259 ~g~~l~~~~ 267 (732)
||.+.++..
T Consensus 322 DG~lyv~~~ 330 (354)
T 3a9g_A 322 DGGILISTS 330 (354)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 997655553
No 340
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=70.02 E-value=1.8e+02 Score=34.27 Aligned_cols=116 Identities=17% Similarity=0.205 Sum_probs=67.9
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCC----CCEEEEEEC-CCcEEEEEcC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS----DELVVSGAG-DAEVRLFNLS 94 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~----g~~l~s~~~-dg~i~vwd~~ 94 (732)
..|...+.+. .+++.++ .+.+.++++..++........-...|.|+++.|... ..+++.|.. |++|+|+.+.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3566665543 3555554 577888877765432211123356799999986421 368999986 9999999998
Q ss_pred CCCCCCCCCCCCCCceeeccccCceeEEEEec-CCCcEEEEEeCCCcEEEEECC
Q 004739 95 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFR 147 (732)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~s~s~dg~i~vwd~~ 147 (732)
..... ....+.. .....++.+.. .+..+|..|-.||.+.-+.+.
T Consensus 591 ~l~~~--------~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 591 SFELL--------HKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TCCEE--------EEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCeE--------EEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 52210 0112211 12344444332 133577788899988766554
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.77 E-value=12 Score=43.02 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=27.8
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEE
Q 004739 605 GQRGDYIASGSDDGRWFIWEKQTGRLIKML 634 (732)
Q Consensus 605 s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l 634 (732)
.++..+|+|-+.|+++|||++.+|+++.+.
T Consensus 244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp ETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 678899999999999999999999999875
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=67.52 E-value=60 Score=31.93 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=25.9
Q ss_pred CcEEEEeCCCCeeEEEEccCCCcCe-EEEEEecCCCCCEEEEEEC------CCcEEEEEc
Q 004739 41 THINVWSYSSRKLLHSIETGHSANV-FCTKFVPETSDELVVSGAG------DAEVRLFNL 93 (732)
Q Consensus 41 g~i~vWd~~~~~~~~~~~~~h~~~V-~~~~~s~~~~g~~l~s~~~------dg~i~vwd~ 93 (732)
..+.+||+.+.+....-.......- .++.... +.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~---~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG---DKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEET---TEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEEC---CEEEEEeeecCCCcccCceEEEEe
Confidence 5788999988764432211111111 2333333 366666653 345777776
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=60.82 E-value=48 Score=36.51 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=58.9
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCC--cEEEEEcCCCCCCCC
Q 004739 30 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGL 101 (732)
Q Consensus 30 dg~~lasg~~d------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg--~i~vwd~~~~~~~~~ 101 (732)
++++++.||.+ ..+.+||+.+.+....-.......-.++....+ +.+++.|+.++ .+.+||+.+..-...
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 67777777743 357889988765433210011111122222224 47888887654 689999886432211
Q ss_pred CCCCCCCceeeccccCceeEEEEecCCCcEEEEEeC--C-----CcEEEEECCCCC
Q 004739 102 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--D-----GTLRQHDFRQGS 150 (732)
Q Consensus 102 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~--d-----g~i~vwd~~~~~ 150 (732)
. ....+........++.+....+.+++.|+. + ..+.+||+.+..
T Consensus 529 ~-----~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 529 T-----PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp C-----CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred c-----CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 0 000011111112334455433567777765 2 357888887765
No 344
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.51 E-value=7.3 Score=42.44 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=27.5
Q ss_pred CCCCEEEEecCCCcEEEEEcCcccEEEEEec
Q 004739 606 QRGDYIASGSDDGRWFIWEKQTGRLIKMLLG 636 (732)
Q Consensus 606 ~dg~~lasgs~Dg~i~iWd~~tg~~~~~l~g 636 (732)
.+..||++-+.|+++|+||+.+++++.+..-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3678999999999999999999999887654
No 345
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.02 E-value=11 Score=44.37 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=27.7
Q ss_pred cCCCCEEEEecCCCcEEEEEcCcccEEEEE
Q 004739 605 GQRGDYIASGSDDGRWFIWEKQTGRLIKML 634 (732)
Q Consensus 605 s~dg~~lasgs~Dg~i~iWd~~tg~~~~~l 634 (732)
.++..+|+|-+.|+++||||+.+++|+.+.
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 678899999999999999999999998875
No 346
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.01 E-value=35 Score=36.46 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=39.7
Q ss_pred ccCCCCEEEEecCC------------CcEEEEEcCcccEEEEEecC-cccEEEEeecCCCCeEEEe
Q 004739 604 LGQRGDYIASGSDD------------GRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATS 656 (732)
Q Consensus 604 ~s~dg~~lasgs~D------------g~i~iWd~~tg~~~~~l~gH-~~~V~~v~fsp~~~~l~S~ 656 (732)
|+|+|.+++.-..+ ..+.+.+..+|++.+-|.++ ..++++++|+||++.|+..
T Consensus 483 fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 58999877653322 23556677789998888887 4689999999999976654
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=51.35 E-value=1.7e+02 Score=27.98 Aligned_cols=104 Identities=7% Similarity=0.022 Sum_probs=55.7
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEE--CCCcE
Q 004739 25 ISWNSKGSLLISGSDD--------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--GDAEV 88 (732)
Q Consensus 25 l~~s~dg~~lasg~~d--------------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~--~dg~i 88 (732)
--++++|.+|.-.... ..|+..++...+..... . . .+..|+++ ++.|+-.. .++.-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-~-~----~~~~~s~~--g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-P-D----PCIYASLI--GNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-C-S----CEEEEEEE--TTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-c-C----CccEEEEe--CCEEEEEeecCCCCc
Confidence 3467888888766532 35777777766533222 1 1 12367777 46776655 34555
Q ss_pred EEEEcCCCCCCCCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 004739 89 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 149 (732)
Q Consensus 89 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~ 149 (732)
.||.+...... ...+..+.. .+++|++..++.+......|.+.++...
T Consensus 130 ~Iy~~~~dGs~---------~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 130 SLYRIRIDGEE---------KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEEETTSCC---------CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred eEEEEECCCCC---------eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence 55544431111 233333322 3466766555555444567777777554
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.78 E-value=21 Score=41.08 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=33.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 57 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~ 57 (732)
..|.+++..++..+++|-+.|+++|||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35677888888899999999999999999999988765
No 349
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=49.60 E-value=3e+02 Score=30.31 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCC
Q 004739 19 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG 98 (732)
Q Consensus 19 ~~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~ 98 (732)
...|.++.-..+|.+.+.. +.-+..+|..+.+..... ......|.++.. .+ ..|..++.+ -|..+|..+..
T Consensus 62 ~~~i~~i~~d~~g~lWigT--~~Gl~~yd~~~~~f~~~~-~~~~~~i~~i~~-~~---g~lWigt~~-Gl~~~~~~~~~- 132 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGT--DNGILVYNYRADRYEQPE-TDFPTDVRTMAL-QG---DTLWLGALN-GLYTYQLQSRK- 132 (758)
T ss_dssp SSCEEEEEEETTTEEEEEE--TTEEEEEETTTTEECCCS-CCCCSCEEEEEE-ET---TEEEEEETT-EEEEEETTTCC-
T ss_pred CceEEEEEEcCCCcEEEEe--CCCeEEEeCCCCEEECcc-cCCCceEEEEEe-cC---CcEEEEcCC-cceeEeCCCCe-
Q ss_pred CCCCCCCCCCceeeccc-----cCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCc
Q 004739 99 RGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA 173 (732)
Q Consensus 99 ~~~~~~~~~~~~~~~~h-----~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (732)
+..+... ...|.++....++.-++.+ ++-|..++..+.+
T Consensus 133 ----------~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt---~~Gl~~~~~~~~~----------------------- 176 (758)
T 3ott_A 133 ----------LTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT---YNGLCRYIPSNGK----------------------- 176 (758)
T ss_dssp ----------EEEECHHHHCCSCSCEEEEEECTTCCEEEEE---TTEEEEEETTTTE-----------------------
T ss_pred ----------EEEeccCCCCcCCCeEEEEEEcCCCCEEEEe---CCCHhhCccCCCc-----------------------
Q ss_pred cccccCCCCC---ccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCcccc
Q 004739 174 KRSLADPPKQ---TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH 250 (732)
Q Consensus 174 ~~~~~~~~~~---~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (732)
...+...... ...|.++...++ +..|..|+ ++.|..+|..+.+.... ..-....
T Consensus 177 ~~~~~~~~~~~~~~~~i~~i~~d~~-~~~lWigt-~~Gl~~~~~~~~~~~~~---------------------~~l~~~~ 233 (758)
T 3ott_A 177 FEGIPLPVHSSQSNLFVNSLLEDTT-RQCVWIGT-EGYLFQYFPSTGQIKQT---------------------EAFHNNS 233 (758)
T ss_dssp EEEECCCCCTTCSSCCEEEEEEETT-TTEEEEEE-EEEEEEEETTTTEEEEE---------------------EEEEEEE
T ss_pred eEEecCCCccccccceeEEEEEECC-CCEEEEEE-CCCCeEEcCCCCeEEec---------------------cCCCCCe
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Q 004739 251 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 281 (732)
Q Consensus 251 i~~l~~sp~g~~l~~~~~dg~v~iwd~~~~~ 281 (732)
|.++...++|. |.+|+ ++-+.+++..+..
T Consensus 234 i~~i~~d~~g~-lWigT-~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 234 IKSLALDGNGD-LLAGT-DNGLYVYHNDTTP 262 (758)
T ss_dssp EEEEEECTTCC-EEEEE-TTEEEEECCTTSC
T ss_pred EEEEEEcCCCC-EEEEe-CCceeEEecCCCc
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=46.51 E-value=1.9e+02 Score=27.21 Aligned_cols=184 Identities=13% Similarity=0.033 Sum_probs=99.4
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCC
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR 99 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~ 99 (732)
..|..++..... .++. . ||.|..|-......+..- ......|..++.-.. ..++. . ||.|..|-.......
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~---hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY---HSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS---EEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC---EEEEE-E-CCEEEEeeCCCCCCC
Confidence 357777765432 2333 4 899999975543222211 122346777776554 34444 4 999999976642211
Q ss_pred CCCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccC
Q 004739 100 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD 179 (732)
Q Consensus 100 ~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (732)
. .|.. -...|..|+.-. ...+.-. ||.|..|-......+..
T Consensus 95 g------~P~~----~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~------------------------- 135 (282)
T 3qhy_B 95 T------VPAE----ARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTV------------------------- 135 (282)
T ss_dssp C------CCGG----GSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSC-------------------------
T ss_pred C------CCcc----cCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCC-------------------------
Confidence 1 1111 134678887754 3333445 89999998765432210
Q ss_pred CCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCC
Q 004739 180 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN 259 (732)
Q Consensus 180 ~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~ 259 (732)
+......|..++.... ..++ -. ||.|+.|-.....++.. |... ...|..++--.+
T Consensus 136 ~~~~~~~i~~i~~G~~--~~~~-l~-~G~v~~wG~n~~gqlg~---------------p~~~------~~~v~~i~~G~~ 190 (282)
T 3qhy_B 136 PAEAQSGVTALDGGVY--TALA-VK-NGGVIAWGDNYFGQTTV---------------PAEA------QSGVDDVAGGIF 190 (282)
T ss_dssp CGGGGSSEEEEEECSS--EEEE-EE-TTEEEEEECCTTSTTSC---------------CGGG------GSSEEEEEECSS
T ss_pred CccCCCCeEEEEcccC--EEEE-EE-CCEEEEecCCCCCCCCC---------------ceec------CCCeEEEEecCC
Confidence 0011224666666543 2333 34 79999998765433321 0000 114776665443
Q ss_pred CCEEEEEecCCeEEEEECCC
Q 004739 260 GEEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 260 g~~l~~~~~dg~v~iwd~~~ 279 (732)
. .++- .||.|+.|=...
T Consensus 191 h--s~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 191 H--SLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp E--EEEE-ETTEEEEEECCT
T ss_pred E--EEEE-ECCeEEEEECCC
Confidence 3 3333 699999996655
No 351
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=43.20 E-value=55 Score=34.62 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=38.0
Q ss_pred ccCCCCEEE-Eec-----------CCCcEEEEEcCcccEEEEEecC-cccEEEEeecCCCCeEEEe
Q 004739 604 LGQRGDYIA-SGS-----------DDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCHPFDCVVATS 656 (732)
Q Consensus 604 ~s~dg~~la-sgs-----------~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~fsp~~~~l~S~ 656 (732)
|+++|.+.+ |=. ....+..++..+|++...+.+. ...+++++|+||+++|..+
T Consensus 483 fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 483 FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 488888777 321 1225777787789987777765 4679999999999965544
No 352
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=38.96 E-value=2.6e+02 Score=26.61 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=16.7
Q ss_pred EEcCCCCEEEEEecC--CeEEEEECCCC
Q 004739 255 TFSPNGEEVLLSYSG--EHVYLMDVNHA 280 (732)
Q Consensus 255 ~~sp~g~~l~~~~~d--g~v~iwd~~~~ 280 (732)
.++|++.+|+-.... ..|..-++...
T Consensus 190 ~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 190 PVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp EEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred eeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 356988888876553 35666666553
No 353
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.91 E-value=25 Score=41.54 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 004739 20 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 57 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~ 57 (732)
..|.+++..++..+|++-+.|+++|||++.+++++.+.
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 35566777788899999999999999999999998775
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.51 E-value=2.6e+02 Score=26.33 Aligned_cols=183 Identities=11% Similarity=-0.015 Sum_probs=96.0
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEEECCCcEEEEEcCCCCCCC
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG 100 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~dg~i~vwd~~~~~~~~ 100 (732)
.|..++...+.. ++. . ||.|..|-......+..- ..-...|..++.-.. ..++. . ||.|..|-..... +.
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P-~~~~~~v~~ia~G~~---hs~al-~-~G~v~~wG~n~~g-ql 133 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVP-AEARSGVDAIAAGAW---ASYAL-K-DGKVIAWGDDSDG-QT 133 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCC-GGGSSSEEEEEEETT---EEEEE-E-TTEEEEEECCTTS-TT
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCC-cccCCCeEEEECcCC---EEEEE-e-CCeEEEecCCCCC-cC
Confidence 456666543322 333 4 889999975543222111 122346777776655 33333 4 9999999765421 11
Q ss_pred CCCCCCCCceeeccccCceeEEEEecCCCcEEEEEeCCCcEEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCC
Q 004739 101 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 180 (732)
Q Consensus 101 ~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (732)
.........|..++.-. ...+.-. ||.|..|-......+.. +
T Consensus 134 ---------g~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~-------------------------p 175 (282)
T 3qhy_B 134 ---------TVPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTV-------------------------P 175 (282)
T ss_dssp ---------SCCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSC-------------------------C
T ss_pred ---------CCCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCC-------------------------c
Confidence 11111234577776643 2333334 79999998765432210 0
Q ss_pred CCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCCCCCCcccccCCCCCCccccccccccccCCCccccEEEEEEcCCC
Q 004739 181 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG 260 (732)
Q Consensus 181 ~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp~g 260 (732)
......|..++.... ..++. .||.|+.|=.....++... ... ...|..++--...
T Consensus 176 ~~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~gqlg~p---------------~~~------~~~v~~i~~G~~h 230 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRYKQTTVP---------------TEA------LSGVSAIASGEWY 230 (282)
T ss_dssp GGGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTTSTTCCC---------------GGG------GSSCCEEEECSSC
T ss_pred eecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCCCCCCCC---------------ccc------CCCceEEEcCCCE
Confidence 001225677766543 34444 5999999987654333210 000 0136566544333
Q ss_pred CEEEEEecCCeEEEEECCC
Q 004739 261 EEVLLSYSGEHVYLMDVNH 279 (732)
Q Consensus 261 ~~l~~~~~dg~v~iwd~~~ 279 (732)
.++-. ||.|+.|=...
T Consensus 231 --~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 231 --SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp --EEEEE-TTEEEEESTTC
T ss_pred --EEEEE-CCEEEEecCCC
Confidence 33333 99999996554
No 355
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.49 E-value=46 Score=36.32 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=29.1
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeeEEEE
Q 004739 21 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI 57 (732)
Q Consensus 21 ~V~~l~~s~dg~~lasg~~dg~i~vWd~~~~~~~~~~ 57 (732)
.|.++.+ +..+|++-+.|.++|+|++.+++++...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4665555 3679999999999999999999988776
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=37.33 E-value=3.2e+02 Score=27.04 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=18.4
Q ss_pred ceEEEEecCCCCCEEEEEeCCCeEEEEE
Q 004739 186 SLKSCDISSTRPHLLLVGGSDAFARLYD 213 (732)
Q Consensus 186 ~v~~i~~~~~~~~~l~tg~~dg~v~iwd 213 (732)
.+.++.+.|.++..|.++...+ |...+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 5788999987556777777554 44443
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=37.10 E-value=57 Score=34.40 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=49.2
Q ss_pred ccCCCCEEEE-ecCCCcEEEEEcCcc------c-------EEEEEecCcccEEEEeecCCCCeEEEecCCCcEEEEcCCC
Q 004739 604 LGQRGDYIAS-GSDDGRWFIWEKQTG------R-------LIKMLLGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPSA 669 (732)
Q Consensus 604 ~s~dg~~las-gs~Dg~i~iWd~~tg------~-------~~~~l~gH~~~V~~v~fsp~~~~l~S~s~D~~i~vW~~~~ 669 (732)
.+|||+|++. |--+.++-|+|++.- + .+....- --.-.-.+|.++|....|--.|+.|.-|++..
T Consensus 330 vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 330 TSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp ECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred eCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 6999999965 557899999998842 1 1333332 23456689999997677777999999999975
Q ss_pred C
Q 004739 670 S 670 (732)
Q Consensus 670 ~ 670 (732)
.
T Consensus 409 a 409 (638)
T 3sbq_A 409 A 409 (638)
T ss_dssp H
T ss_pred H
Confidence 4
No 358
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=36.32 E-value=1e+02 Score=32.56 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=51.5
Q ss_pred CceeEEEEcCCCCEEEEEe-CCCcEEEEeCCCC------e-------eEEEEccCCCcCeEEEEEecCCCCCEEEEEECC
Q 004739 20 GCVNAISWNSKGSLLISGS-DDTHINVWSYSSR------K-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD 85 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~-~dg~i~vWd~~~~------~-------~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~~~d 85 (732)
.....+.++|||++++.++ -+.+|.|+|+... + ..... .-.-.....+|.++ |+...|---|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e~GlGPlHt~Fd~~--G~aYTtlfid 398 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--ELGLGPLHTTFDGR--GNAYTTLFID 398 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--BCCSCEEEEEECSS--SEEEEEETTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--cCCCcccEEEECCC--CceEeeeeec
Confidence 4445788999999988776 5789999998742 1 12222 22344678899998 5555555689
Q ss_pred CcEEEEEcCC
Q 004739 86 AEVRLFNLSR 95 (732)
Q Consensus 86 g~i~vwd~~~ 95 (732)
..|.-|++..
T Consensus 399 SqvvkWni~~ 408 (638)
T 3sbq_A 399 SQVVKWNMEE 408 (638)
T ss_dssp TEEEEEEHHH
T ss_pred ceEEEEeccH
Confidence 9999999974
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=33.89 E-value=1.2e+02 Score=32.46 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=38.5
Q ss_pred eEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCeeEEEEccCCCcCeEEEEEecCCCCCEEEEE
Q 004739 23 NAISWNSKGSLLISGSDD------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 23 ~~l~~s~dg~~lasg~~d------------g~i~vWd~~~~~~~~~~~~~h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
--|+|+|.|++++.-..+ ..+.+.+..+++...-+.......++.++|+|+. +.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg--~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQ--KTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTS--SEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCC--CEEEEE
Confidence 458999999977764322 2345556667766554533445789999999994 666543
No 360
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=30.64 E-value=69 Score=31.42 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=41.0
Q ss_pred CCEEEEecCCCcEEEEEcCcccEEEEEecC-cccEEEEeec--C-CCCeEEEe-cCCCcEEEEcCCCCC
Q 004739 608 GDYIASGSDDGRWFIWEKQTGRLIKMLLGD-EAVVNCVQCH--P-FDCVVATS-GIDNTIKIWTPSASV 671 (732)
Q Consensus 608 g~~lasgs~Dg~i~iWd~~tg~~~~~l~gH-~~~V~~v~fs--p-~~~~l~S~-s~D~~i~vW~~~~~~ 671 (732)
+.+++.++.||.|.-.|.++|+.+.++..- ..++..+.-. + ++..++.. ..||.|..++..++.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 357888999999999999999999998764 1222222100 1 22333332 567877777766654
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=29.11 E-value=4.8e+02 Score=26.67 Aligned_cols=29 Identities=3% Similarity=-0.034 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCCC-EEEEEECCCcEEEEEcC
Q 004739 64 NVFCTKFVPETSDE-LVVSGAGDAEVRLFNLS 94 (732)
Q Consensus 64 ~V~~~~~s~~~~g~-~l~s~~~dg~i~vwd~~ 94 (732)
....|+|.|++ . .|+.+...|.|++++..
T Consensus 15 ~P~~~a~~pdG--~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDG--SQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSS--SCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCC--CeEEEEEeCCceEEEEeCC
Confidence 45789999994 4 34445678999999754
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=28.93 E-value=2.2e+02 Score=30.18 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=40.5
Q ss_pred CceeEEEEcCCCCEEEEEeC------------CCcEEEEeCCCCeeEEEEccC-CCcCeEEEEEecCCCCCEEEEE
Q 004739 20 GCVNAISWNSKGSLLISGSD------------DTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSG 82 (732)
Q Consensus 20 ~~V~~l~~s~dg~~lasg~~------------dg~i~vWd~~~~~~~~~~~~~-h~~~V~~~~~s~~~~g~~l~s~ 82 (732)
.....|.|.++|.+.++... ...|..++..+++....+ .. ....++.++|+|++ +.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl-~~P~~aEpnGiafSPD~--ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM-VGPIGCEVTGISFSPDQ--KTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE-ECCTTCEEEEEEECTTS--SEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE-eCCCCccccCCEECCCC--CEEEEE
Confidence 34567999999998774321 125666677777765544 33 34678999999995 666554
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=24.40 E-value=7.5e+02 Score=27.33 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=37.9
Q ss_pred CCceeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeeEEEEccC------CCcCeEEEEEecCCCCCEEEEEE
Q 004739 19 QGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVFCTKFVPETSDELVVSGA 83 (732)
Q Consensus 19 ~~~V~~l~~s~d-g~~lasg~~dg~i~vWd~~~~~~~~~~~~~------h~~~V~~~~~s~~~~g~~l~s~~ 83 (732)
...|.+|+++|. ...+..+...+.|...+ ..++.-..+... ....|.+|+++|.. .+.++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~-~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNN-PDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTE-EEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCC-CCEEEEEe
Confidence 468999999995 35566677777776665 333332223111 12469999999853 24444443
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=23.46 E-value=5.5e+02 Score=25.43 Aligned_cols=181 Identities=6% Similarity=0.017 Sum_probs=94.2
Q ss_pred CceeEEEEcCCCCEEEE--EeC-------------CCcEEEEeCCCC--eeEEEEccC-----CCcCeEEEEEe---cC-
Q 004739 20 GCVNAISWNSKGSLLIS--GSD-------------DTHINVWSYSSR--KLLHSIETG-----HSANVFCTKFV---PE- 73 (732)
Q Consensus 20 ~~V~~l~~s~dg~~las--g~~-------------dg~i~vWd~~~~--~~~~~~~~~-----h~~~V~~~~~s---~~- 73 (732)
-.|..+...+++++-+. |-- -.+|.+||+.+. +.++++.-. ....+..+.+. |.
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 46777888887765442 211 236889999999 888877322 23457888888 21
Q ss_pred -CCCCEEEEEE-CCCcEEEEEcCCCCCCCCCCCCCCC----ceeeccc----cCceeEEEEecCC---CcEEEEEeCCCc
Q 004739 74 -TSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITP----SALYQCH----TRRVKKLAVEVGN---PHVVWSASEDGT 140 (732)
Q Consensus 74 -~~g~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~h----~~~v~~l~~~p~~---~~~l~s~s~dg~ 140 (732)
+.+.+++.+. ..+-|.|+|+.+++..........+ .....+. ...+..|+++|+. ++.|.-....+
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss- 245 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA- 245 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-
Confidence 1123444333 4677999999975432211100001 1111121 3578889999861 34444444332
Q ss_pred EEEEECCCCCCCCCCCCCCcccceEEeeccCCccccccCCCCCccceEEEEecCCCCCEEEEEeCCCeEEEEECCC
Q 004739 141 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM 216 (732)
Q Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~tg~~dg~v~iwd~~~ 216 (732)
-++|.+.+.-...... . .....+.. .+....-..+++.+..|.++++--..+.|..|+..+
T Consensus 246 ~~ly~V~T~~L~~~~~----~----------~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGG----K----------LNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SEEEEEEHHHHSSTTC----C----------CCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CcEEEEEHHHhhCcch----h----------hceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 2344443221110000 0 00000100 011113345667643377777778889999999875
No 365
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=20.96 E-value=63 Score=35.63 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=44.8
Q ss_pred eeecccccCCCCEEEE-----ecCCCcEEEEEcCcccEEE-EEecCcc--------cEEEEeecCCCCeEEEe-------
Q 004739 598 IKQASFLGQRGDYIAS-----GSDDGRWFIWEKQTGRLIK-MLLGDEA--------VVNCVQCHPFDCVVATS------- 656 (732)
Q Consensus 598 i~~~~f~s~dg~~las-----gs~Dg~i~iWd~~tg~~~~-~l~gH~~--------~V~~v~fsp~~~~l~S~------- 656 (732)
+..+.+++||+++++- ||.-..|+++|++|++.+. .|. ... .-..++|.+++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 5555546999999875 3445689999999999874 222 110 01233776455555542
Q ss_pred ---cCCCcEEEEcCCCCC
Q 004739 657 ---GIDNTIKIWTPSASV 671 (732)
Q Consensus 657 ---s~D~~i~vW~~~~~~ 671 (732)
+.-..|+.|.+-+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~ 227 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESI 227 (711)
T ss_dssp CTTSSBCEEEEEETTSCG
T ss_pred CcCCCCCEEEEEECCCCh
Confidence 123568888776553
Done!