Query 004741
Match_columns 732
No_of_seqs 160 out of 283
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 12:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07393 Sec10: Exocyst comple 100.0 4.6E-96 1E-100 868.1 54.3 533 148-731 1-610 (710)
2 KOG3745 Exocyst subunit - Sec1 100.0 2.6E-92 5.6E-97 791.4 56.4 591 34-731 22-657 (763)
3 PF10191 COG7: Golgi complex c 99.3 1.3E-08 2.9E-13 122.1 38.9 310 174-540 105-426 (766)
4 PF04100 Vps53_N: Vps53-like, 98.6 2.8E-05 6E-10 86.6 29.2 330 106-474 17-380 (383)
5 KOG4182 Uncharacterized conser 97.6 0.096 2.1E-06 58.3 29.4 264 253-537 172-483 (828)
6 KOG2180 Late Golgi protein sor 97.5 0.21 4.6E-06 58.3 31.9 345 95-477 19-398 (793)
7 KOG0412 Golgi transport comple 96.9 0.096 2.1E-06 61.0 21.0 266 98-376 23-302 (773)
8 smart00762 Cog4 COG4 transport 93.8 13 0.00027 40.9 23.8 102 262-368 2-107 (324)
9 PF08318 COG4: COG4 transport 93.4 0.96 2.1E-05 49.7 12.8 115 262-382 2-119 (331)
10 PF10475 DUF2450: Protein of u 93.3 5.5 0.00012 42.9 18.1 188 77-287 9-199 (291)
11 PF06419 COG6: Conserved oligo 92.6 29 0.00062 41.6 29.0 283 106-396 12-326 (618)
12 PF10392 COG5: Golgi transport 89.2 6.7 0.00015 37.2 12.1 93 108-200 34-126 (132)
13 PF07889 DUF1664: Protein of u 83.2 4.4 9.5E-05 38.2 7.2 80 102-181 31-110 (126)
14 PF06248 Zw10: Centromere/kine 80.0 1.4E+02 0.003 35.6 29.8 118 343-477 276-393 (593)
15 PHA02562 46 endonuclease subun 70.4 2.1E+02 0.0045 33.5 18.1 81 120-200 194-281 (562)
16 PF14712 Snapin_Pallidin: Snap 64.8 72 0.0016 27.9 9.8 67 99-165 13-90 (92)
17 PF01763 Herpes_UL6: Herpesvir 63.6 19 0.00041 42.2 7.3 44 21-64 293-341 (557)
18 PF08700 Vps51: Vps51/Vps67; 60.6 68 0.0015 27.5 8.8 69 100-168 10-80 (87)
19 PF10454 DUF2458: Protein of u 60.6 1.7E+02 0.0037 28.5 13.1 70 100-169 3-75 (150)
20 PF04899 MbeD_MobD: MbeD/MobD 60.0 32 0.00069 29.1 6.2 66 115-180 4-69 (70)
21 PF06046 Sec6: Exocyst complex 59.9 3.5E+02 0.0075 31.8 21.6 133 359-523 124-264 (566)
22 KOG4552 Vitamin-D-receptor int 59.8 48 0.001 33.7 8.3 92 100-201 47-140 (272)
23 PF09325 Vps5: Vps5 C terminal 56.7 2.3E+02 0.0051 28.9 15.6 48 90-137 21-68 (236)
24 PF05531 NPV_P10: Nucleopolyhe 56.3 22 0.00048 30.5 4.6 51 118-169 15-65 (75)
25 KOG0994 Extracellular matrix g 55.2 5.7E+02 0.012 32.9 31.3 55 136-190 1229-1283(1758)
26 KOG3990 Uncharacterized conser 54.1 1.6E+02 0.0034 31.1 11.1 73 89-163 216-298 (305)
27 PF09763 Sec3_C: Exocyst compl 52.9 1.6E+02 0.0035 35.8 13.2 33 645-677 629-661 (701)
28 PF03127 GAT: GAT domain; Int 49.7 35 0.00077 30.6 5.3 55 107-163 41-95 (100)
29 smart00503 SynN Syntaxin N-ter 44.0 2.1E+02 0.0046 25.6 9.7 64 100-163 43-113 (117)
30 cd07650 F-BAR_Syp1p_like The F 43.5 3.9E+02 0.0086 27.6 17.1 170 93-302 2-188 (228)
31 PF05816 TelA: Toxic anion res 43.4 1.1E+02 0.0024 33.7 8.9 63 101-163 78-140 (333)
32 COG4942 Membrane-bound metallo 43.0 1.7E+02 0.0037 33.2 10.3 88 94-181 155-245 (420)
33 PF14988 DUF4515: Domain of un 41.1 1.1E+02 0.0024 31.3 8.0 94 102-201 66-159 (206)
34 PRK15365 type III secretion sy 40.1 1.2E+02 0.0027 27.2 6.8 23 146-168 73-95 (107)
35 cd07627 BAR_Vps5p The Bin/Amph 39.9 4.3E+02 0.0093 27.0 17.7 73 91-164 2-76 (216)
36 PF14523 Syntaxin_2: Syntaxin- 38.5 2.6E+02 0.0056 24.6 9.1 65 100-164 30-96 (102)
37 PF15469 Sec5: Exocyst complex 38.2 3.7E+02 0.0081 26.5 11.1 140 154-310 41-180 (182)
38 cd07596 BAR_SNX The Bin/Amphip 37.8 4.2E+02 0.009 26.3 16.9 40 92-131 3-42 (218)
39 PF00261 Tropomyosin: Tropomyo 37.8 2E+02 0.0044 29.9 9.5 46 134-179 171-216 (237)
40 cd00179 SynN Syntaxin N-termin 36.4 3.1E+02 0.0067 25.9 9.9 64 100-163 41-112 (151)
41 cd07651 F-BAR_PombeCdc15_like 36.2 2.7E+02 0.0059 28.8 10.2 18 115-132 119-136 (236)
42 PF00745 GlutR_dimer: Glutamyl 35.9 2.1E+02 0.0046 25.0 8.1 73 342-422 24-99 (101)
43 cd07624 BAR_SNX7_30 The Bin/Am 35.8 2.2E+02 0.0049 28.8 9.2 50 88-137 9-58 (200)
44 PRK04098 sec-independent trans 35.7 2.2E+02 0.0047 28.1 8.5 62 100-162 27-90 (158)
45 PF14662 CCDC155: Coiled-coil 35.3 1.9E+02 0.0042 29.3 8.3 70 103-172 63-135 (193)
46 PF10267 Tmemb_cc2: Predicted 34.9 2.4E+02 0.0053 31.9 9.9 57 102-165 214-270 (395)
47 PF15463 ECM11: Extracellular 34.5 2.6E+02 0.0056 26.7 8.9 55 99-153 79-133 (139)
48 PF06148 COG2: COG (conserved 34.3 13 0.00028 35.1 -0.1 91 107-200 30-123 (133)
49 PF10805 DUF2730: Protein of u 32.9 1.7E+02 0.0037 26.6 7.0 45 137-181 47-93 (106)
50 COG3437 Response regulator con 32.8 7.4E+02 0.016 27.7 13.8 34 91-127 117-150 (360)
51 PF10146 zf-C4H2: Zinc finger- 32.2 2.4E+02 0.0052 29.5 8.8 81 109-190 3-83 (230)
52 PF06363 Picorna_P3A: Picornav 32.1 1.1E+02 0.0023 27.3 5.1 61 654-718 4-64 (100)
53 PF10241 KxDL: Uncharacterized 31.7 3.6E+02 0.0077 23.7 9.4 60 100-163 22-81 (88)
54 cd07648 F-BAR_FCHO The F-BAR ( 31.6 2.6E+02 0.0056 29.4 9.2 64 98-161 125-197 (261)
55 PF01442 Apolipoprotein: Apoli 31.3 3.2E+02 0.007 26.4 9.5 77 100-176 27-105 (202)
56 PF04859 DUF641: Plant protein 31.2 1.3E+02 0.0028 28.7 6.0 52 107-162 80-131 (131)
57 PF04740 LXG: LXG domain of WX 31.2 4E+02 0.0086 26.6 10.2 94 108-201 62-166 (204)
58 PRK10803 tol-pal system protei 30.9 2.9E+02 0.0062 29.4 9.4 64 102-165 42-105 (263)
59 PF06120 Phage_HK97_TLTM: Tail 30.4 5E+02 0.011 28.3 11.1 102 98-199 72-192 (301)
60 PF07889 DUF1664: Protein of u 30.4 4.8E+02 0.01 24.7 9.8 28 138-165 95-122 (126)
61 PF04048 Sec8_exocyst: Sec8 ex 30.4 1.1E+02 0.0024 29.3 5.7 65 108-172 27-91 (142)
62 KOG2148 Exocyst protein Sec3 [ 29.9 5.7E+02 0.012 30.8 11.9 215 98-319 177-428 (867)
63 PF00611 FCH: Fes/CIP4, and EF 29.4 1.9E+02 0.0042 24.5 6.6 46 100-153 13-58 (91)
64 PF04156 IncA: IncA protein; 29.0 4.1E+02 0.0089 26.3 9.8 24 136-159 127-150 (191)
65 PF04124 Dor1: Dor1-like famil 28.9 8E+02 0.017 26.9 28.4 142 119-279 19-170 (338)
66 cd07674 F-BAR_FCHO1 The F-BAR 28.5 4.1E+02 0.009 28.0 10.1 52 112-163 118-174 (261)
67 KOG1029 Endocytic adaptor prot 28.4 1.1E+03 0.023 29.2 13.8 60 141-200 439-499 (1118)
68 PF10498 IFT57: Intra-flagella 28.2 2.2E+02 0.0047 31.9 8.2 37 142-178 276-312 (359)
69 PF09969 DUF2203: Uncharacteri 28.2 3.4E+02 0.0073 25.4 8.2 72 97-168 7-79 (120)
70 PF12718 Tropomyosin_1: Tropom 28.1 4.5E+02 0.0097 25.3 9.3 44 141-184 82-125 (143)
71 PHA03332 membrane glycoprotein 27.7 2.7E+02 0.0058 35.2 9.1 17 219-235 978-994 (1328)
72 PF10018 Med4: Vitamin-D-recep 27.5 3.8E+02 0.0083 26.8 9.2 81 103-199 12-93 (188)
73 PF07393 Sec10: Exocyst comple 27.2 2.8E+02 0.006 33.8 9.6 99 617-717 493-592 (710)
74 cd07667 BAR_SNX30 The Bin/Amph 27.0 7.7E+02 0.017 26.0 13.8 50 88-137 46-95 (240)
75 TIGR00606 rad50 rad50. This fa 26.7 1.1E+03 0.025 31.0 15.6 38 255-300 1114-1151(1311)
76 PF11802 CENP-K: Centromere-as 26.1 6.1E+02 0.013 27.2 10.5 89 102-201 91-182 (268)
77 PRK11637 AmiB activator; Provi 26.0 1E+03 0.022 27.0 14.6 74 108-182 45-118 (428)
78 KOG1962 B-cell receptor-associ 25.7 2E+02 0.0043 29.8 6.7 18 100-117 111-128 (216)
79 cd07628 BAR_Atg24p The Bin/Amp 25.5 6.9E+02 0.015 25.0 15.2 50 257-308 127-179 (185)
80 KOG0250 DNA repair protein RAD 25.3 3E+02 0.0065 34.9 9.2 129 22-164 572-714 (1074)
81 KOG3614 Ca2+/Mg2+-permeable ca 25.2 2.4E+02 0.0051 36.5 8.4 57 254-311 610-666 (1381)
82 cd07673 F-BAR_FCHO2 The F-BAR 25.1 3.7E+02 0.008 28.7 9.0 18 117-134 130-147 (269)
83 PF08580 KAR9: Yeast cortical 25.1 4.7E+02 0.01 31.9 10.8 89 102-190 230-329 (683)
84 PF06013 WXG100: Proteins of 1 25.1 3.8E+02 0.0083 21.9 9.3 69 97-165 8-77 (86)
85 PF01519 DUF16: Protein of unk 25.1 68 0.0015 29.1 2.8 16 164-179 85-100 (102)
86 PRK11637 AmiB activator; Provi 24.9 3.6E+02 0.0078 30.6 9.5 36 100-135 170-205 (428)
87 KOG2129 Uncharacterized conser 24.9 1.1E+03 0.023 27.0 12.4 55 101-155 254-308 (552)
88 PF14942 Muted: Organelle biog 24.0 4.7E+02 0.01 25.3 8.6 70 81-158 13-85 (145)
89 PF12329 TMF_DNA_bd: TATA elem 23.9 2.7E+02 0.0059 23.7 6.2 43 129-171 23-65 (74)
90 PRK02224 chromosome segregatio 23.7 1.4E+03 0.031 28.3 15.3 32 155-186 648-679 (880)
91 PF12709 Kinetocho_Slk19: Cent 23.7 5E+02 0.011 23.0 7.8 32 132-163 42-73 (87)
92 PF05816 TelA: Toxic anion res 23.4 6.7E+02 0.015 27.5 10.9 78 97-176 85-166 (333)
93 PF05377 FlaC_arch: Flagella a 23.1 1.9E+02 0.0041 23.4 4.7 15 139-153 28-42 (55)
94 PF08317 Spc7: Spc7 kinetochor 22.6 3.6E+02 0.0077 29.6 8.5 8 35-42 54-61 (325)
95 KOG1853 LIS1-interacting prote 22.4 4.2E+02 0.009 28.1 8.2 80 100-186 91-173 (333)
96 KOG2629 Peroxisomal membrane a 22.1 4E+02 0.0086 28.8 8.2 69 94-165 112-180 (300)
97 PF04272 Phospholamban: Phosph 22.0 2.4E+02 0.0052 21.7 4.7 31 511-542 3-33 (52)
98 PF10805 DUF2730: Protein of u 22.0 3.4E+02 0.0074 24.7 6.9 55 109-168 37-94 (106)
99 KOG3390 General control of ami 21.6 2.8E+02 0.0062 25.2 6.0 52 125-176 18-74 (120)
100 cd07664 BAR_SNX2 The Bin/Amphi 21.6 8.3E+02 0.018 25.5 10.6 74 88-165 17-95 (234)
101 KOG2176 Exocyst complex, subun 21.2 1.9E+02 0.0041 35.3 6.3 54 141-194 82-135 (800)
102 PF07352 Phage_Mu_Gam: Bacteri 21.1 5.8E+02 0.013 24.5 8.8 56 98-153 5-60 (149)
103 KOG0709 CREB/ATF family transc 20.8 3.2E+02 0.007 31.4 7.6 69 107-175 245-329 (472)
104 PF01442 Apolipoprotein: Apoli 20.5 5.3E+02 0.011 24.8 8.7 14 139-152 133-146 (202)
105 PF10158 LOH1CR12: Tumour supp 20.4 5.8E+02 0.013 24.3 8.3 99 64-179 8-106 (131)
106 cd07600 BAR_Gvp36 The Bin/Amph 20.0 8.1E+02 0.018 25.8 10.1 10 221-230 230-239 (242)
No 1
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=100.00 E-value=4.6e-96 Score=868.12 Aligned_cols=533 Identities=31% Similarity=0.501 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHHHHHHHHHHHHHHhCCCC--CccccCCCCCCchhhHHHHHH
Q 004741 148 VDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPG--DLMELSPLFSDDSRVAEAASI 225 (732)
Q Consensus 148 ~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~--~l~~ls~~f~dp~~~~eaA~i 225 (732)
+++++++|++||++||+||++|+|||||||+++++|.||++|++||+||++|++.++ ++..+++.|++|++..+||+|
T Consensus 1 ~~~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~i 80 (710)
T PF07393_consen 1 FQEAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKI 80 (710)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHH
Confidence 468999999999999999999999999999999999999999999999999998522 334456889999999999999
Q ss_pred HHHHHhhchhhhcccCcccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHH
Q 004741 226 AEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAM 305 (732)
Q Consensus 226 i~kL~~la~e~~~~~~~p~~~~~~~~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I 305 (732)
+++|++||+++ .+.++|..+.++|++||+.||++||++|+.+|+++|+++|++||+||++||||.+||
T Consensus 81 l~~L~~ls~~~------------~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i 148 (710)
T PF07393_consen 81 LRNLLRLSKEL------------SDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCI 148 (710)
T ss_pred HHHHHHHHHhc------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999985 134578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcchhhhhhh-------hhhhhhhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCchHHHHHHH
Q 004741 306 QHYVATRPMFIDVEVMN-------ADVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILV 378 (732)
Q Consensus 306 ~~fV~k~~~Fid~~~~~-------~~~~~~l~~~~~~~~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~~Vm~~Fv 378 (732)
++||+||+||++.+.+. ...|..+.|+ +..++...+.++++|++|+.+|++|++||++|||+|.+||.+||
T Consensus 149 ~~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~d~--~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fi 226 (710)
T PF07393_consen 149 DFFINKHEFFIDEDQLDESNGFEDEEIWEKLSDP--DSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFI 226 (710)
T ss_pred HHHHHhChhhhhhhhhccccccchhHHHHhccCc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 99999999999877662 1335555653 33344567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------cccHHHHHHHHh
Q 004741 379 QRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLAVAYEKTQELARDLRTVGCG---------DLDIEGVTECLF 449 (732)
Q Consensus 379 qrIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~YLr~L~~lY~~t~~lv~~L~~~~~~---------~~~l~~l~~~lF 449 (732)
||||+|+|++||+.+|+.+++. +.++|||+||.+|.+|.+|+++|+++..+ ...++++++++|
T Consensus 227 ervf~~~I~~~i~~lL~~a~~~--------s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF 298 (710)
T PF07393_consen 227 ERVFEQVIQEYIESLLEEASSI--------STLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLF 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHhhccC--------CHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHH
Confidence 9999999999999999998764 56999999999999999999999999432 235899999999
Q ss_pred hHhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhhc------------------------c-ccc------------cc--
Q 004741 450 TSHK--EEYPEHEQASLRQLYQAKIEELRSESQQL------------------------S-ESS------------GT-- 488 (732)
Q Consensus 450 ~~yl--~~Yl~~E~~~L~~~~~~~l~~~~~~~~~~------------------------~-~~~------------~~-- 488 (732)
++|+ +.|++.|++||++.+.+.+.+|+ .++.. . ... .+
T Consensus 299 ~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~-~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T PF07393_consen 299 EPYLEDDEYLEEEKRSLKELLESILSRFN-ELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKL 377 (710)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhccc
Confidence 9999 89999999999999999999999 22100 0 000 00
Q ss_pred ---cCC----------C----CCccccCCCCccCHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHhh-
Q 004741 489 ---IGR----------S----KGASVASSPQQISVTVVTEFVRWNEEALSRCTLFSSQPAALAANVRAVFTCLLDQVSQ- 550 (732)
Q Consensus 489 ---~~r----------~----~~a~l~~~~~~lS~eva~~il~~~keal~Rc~~ls~~~~~~~~~v~~IF~~Ll~~lg~- 550 (732)
..+ . ....+++++++||+|+|++||||+++|++||.+|++ |+++++++++||.+|++.+|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~-~~~~~~~~~~if~~Ll~~l~~~ 456 (710)
T PF07393_consen 378 DRSQQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSP-PSDLPKNCQEIFEILLQSLGEE 456 (710)
T ss_pred CcccccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHHHHHH
Confidence 000 0 001356789999999999999999999999999998 899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhHHHHHhhcCCCchhhHHHhhhhhhHHHHHHHHHHHHHhhhh
Q 004741 551 YITEGLERARDSLTEAAALRERFVLGTSVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRL 630 (732)
Q Consensus 551 hi~~ale~al~~L~~~~~~~~~y~~~~~~~r~~~~~~~~~~e~~~~~~ep~l~~F~elV~~~d~I~~miq~~f~~ei~~~ 630 (732)
||++|||.+...+. +.+...++.+||+. ||++|++||+|+|||++||+++|.|.
T Consensus 457 ~i~~~lea~~~~~~-------------------------~~~~~~~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl 510 (710)
T PF07393_consen 457 HIEPALEAAYYKLS-------------------------SQDIAESKEVPPLV-FLELINQADTILQLLQIFYKEELLPL 510 (710)
T ss_pred HHHHHHHHHHhhhh-------------------------cccccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999994443322 11111124568986 99999999999999999999999887
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 004741 631 LLPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSR 710 (732)
Q Consensus 631 l~pl~~~~~~~~~~kk~~~~~lE~~v~~GL~~~I~~l~~~v~~iL~t~QkktDF~P~~~~~~~~~~pT~aC~~vv~~L~~ 710 (732)
+.+..+..++|+++|++++++||++|+.||++||+++|+||+++|+ +|+|+||+|++++..++.+||+||++||+||+.
T Consensus 511 ~~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~-~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~ 589 (710)
T PF07393_consen 511 IQSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILS-EQKKTDFKPKEDDLSLDQQPTPACQEVVEFLER 589 (710)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCccccccccCCCHHHHHHHHHHHH
Confidence 6554444678999999999999999999999999999999999999 999999999988766667899999999999999
Q ss_pred HHHHHHHcccchhHHHHhhhc
Q 004741 711 VLEAAFTALEGLNKQAFLTEL 731 (732)
Q Consensus 711 ~~~~l~~sldg~nl~vfl~El 731 (732)
|+++++++|||+|+++|++||
T Consensus 590 ~~~~~~~~l~~~nl~~f~~el 610 (710)
T PF07393_consen 590 HCSLLKGSLDGSNLDVFLQEL 610 (710)
T ss_pred HHHHHHHHccchhHHHHHHHH
Confidence 999999999999999999997
No 2
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-92 Score=791.42 Aligned_cols=591 Identities=23% Similarity=0.329 Sum_probs=511.1
Q ss_pred CCCHhHHHHhhhhhcCcCcccccccccCCCCCCCCCCCCCCCCCC--CcchhhhhhcccCCCCChhHHHHHHHHHHHHHH
Q 004741 34 DFSFDALFGNLVNELLPSFQEEEADSADGHGNVSGNDTLPNGHKR--ASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRE 111 (732)
Q Consensus 34 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~tFe~~i~e 111 (732)
+|-.++||+.++..+.- -|+... .-+||+ +++++|+++++|
T Consensus 22 ~~~~~e~Ie~~~~~~~~----------------------~~~~~~~~~~~~~~---------------~l~~~f~~~~~e 64 (763)
T KOG3745|consen 22 DINSDEFIEKLVWRLPL----------------------VNRSFQQSKDLDPK---------------GLIKTFENEIKE 64 (763)
T ss_pred CcchHHHHHHHHhcCcc----------------------ccccccchhhcCcH---------------HHHHHHHHHHHH
Confidence 57788999999887531 011111 246777 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHHHHHH
Q 004741 112 LIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTID 191 (732)
Q Consensus 112 L~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ea~~ 191 (732)
|+.|+++.++|++.+|.+|+.++..|.+++..|+.++..+...|.+||++++.|++++||+|+|||+++++|+|+.+|++
T Consensus 65 L~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~v~~~r~r~~~a~~ 144 (763)
T KOG3745|consen 65 LTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLGQQLETVIKPRSRAVDAQE 144 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCc-hhhHHHHHHHHHHHhhchhhhcccCcccCCCCccccchHHHHHHHHHHHHHHHH
Q 004741 192 LIKYLMEFNSSPGDLMELSPLFSDD-SRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELEN 270 (732)
Q Consensus 192 Li~~~~eF~~~~~~l~~ls~~f~dp-~~~~eaA~ii~kL~~la~e~~~~~~~p~~~~~~~~~~~e~~~~~Ie~~~e~fE~ 270 (732)
||+||++|++. |+-...+.+|+++ ++..+||+++++|++||++. |. +.+.++..+|+++++.||+
T Consensus 145 lir~~~eF~s~-~~~~i~s~i~~~~~~k~leaa~~~~kLl~isnel------~~-------~~f~~tka~I~k~~~~lE~ 210 (763)
T KOG3745|consen 145 LIRYYNEFLSG-GRQYINSDIFTSAFDKNLEAADRIKKLLLISNEL------PY-------GKFSETKARIEKKYEVLEQ 210 (763)
T ss_pred HHHHHHHHhcc-CchhHHHHHhcChhhhHHHHHHHHHHHHHHhccC------Cc-------chhHHHHHHHHHHHHHHHH
Confidence 99999999974 3332357888888 78899999999999999985 21 1355778999999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHhhCCcchhhhhhhhhhhhhhcCCCCCCCCCchhhhHHHHHH
Q 004741 271 RLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQGSQASPSNVARGLASLYK 350 (732)
Q Consensus 271 ~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~k~~~Fid~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~f~ 350 (732)
++|++|+.+||++|+++|+++|+||++||| +|+.|+++|++|||....+. + .+-.+..++++|.
T Consensus 211 ~lleeF~~~~R~~n~~~m~~~a~iL~~F~G---~v~~y~n~~d~fid~~~~~~-~------------~~fi~~~~~di~~ 274 (763)
T KOG3745|consen 211 NLLEEFNSAQREENIKKMAEFAKILSEFKG---VVRMYLNCVDDFIDSDEFQP-E------------QPFISNILQDIFN 274 (763)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhcc---hHHHHHHhHHHHHHHhhccc-h------------hhHHHHHHHHHHH
Confidence 999999999999999999999999999998 89999999999998621110 0 0112235889999
Q ss_pred HHHHHHHHHHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH
Q 004741 351 EITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLAVAYEKTQELARD 430 (732)
Q Consensus 351 ~I~~~v~~e~~iI~~VFp~p~~Vm~~FvqrIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~YLr~L~~lY~~t~~lv~~ 430 (732)
++..+|+.++++|++|||+|+.||++|++|||.++|++|++.+|+..... .+.++|||.||++|.++.+++.+
T Consensus 275 D~~~l~~~~sk~ik~vf~~pe~V~q~~iq~If~~~ik~~~~e~le~~~~~-------~~~l~ylR~L~~Lys~~~k~~~~ 347 (763)
T KOG3745|consen 275 DILKLCESESKFIKRVFPNPETVLQKFIQNIFGQKIKDRVEELLEECKEG-------KDFLAYLRDLYGLYSSTLKLSKD 347 (763)
T ss_pred HHHHHHHhHhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999986532 57899999999999999999999
Q ss_pred Hhhc----C-CC-cccHHHHHHHHhhHhhhhhHHHHHHHH----------HHHHHHHHHHHHHhhh-hccccccc-c---
Q 004741 431 LRTV----G-CG-DLDIEGVTECLFTSHKEEYPEHEQASL----------RQLYQAKIEELRSESQ-QLSESSGT-I--- 489 (732)
Q Consensus 431 L~~~----~-~~-~~~l~~l~~~lF~~yl~~Yl~~E~~~L----------~~~~~~~l~~~~~~~~-~~~~~~~~-~--- 489 (732)
|..+ . .. ...+.++.+.+|..|+..|++.|..++ +..+...+.+++.+.+ |++..+++ .
T Consensus 348 L~~~~e~~~~~~d~~~lst~~~q~f~~~~~~y~e~e~~~~~n~~~~~~~~~~k~s~~l~~~~~sp~~h~k~~~t~~~~~l 427 (763)
T KOG3745|consen 348 LVDYFEQLFISDDNQFLSTLLEQIFIDYLAKYIEVEDKYLQNTLKNLFLETFKCSTLLPRFYESPKEHQKSNSTELGGKL 427 (763)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhHHHHHHHHHhHHHHhcCchhhhhhhcccccccc
Confidence 9988 3 22 246999999999999999999999999 7777788888887665 55443332 1
Q ss_pred -------CCCCC---------c----cccCCCCccCHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHh
Q 004741 490 -------GRSKG---------A----SVASSPQQISVTVVTEFVRWNEEALSRCTLFSSQPAALAANVRAVFTCLLDQVS 549 (732)
Q Consensus 490 -------~r~~~---------a----~l~~~~~~lS~eva~~il~~~keal~Rc~~ls~~~~~~~~~v~~IF~~Ll~~lg 549 (732)
.|... + .+ +++|++|+|+|++||||+++|++||..|+. |+++|-++.+||++|+..++
T Consensus 428 d~~~~v~~r~N~~~d~~~~~~a~~s~~l-~g~Tfis~dl~~~iLqe~kes~~Ra~~l~~-~~dlp~~~l~i~~iLl~~L~ 505 (763)
T KOG3745|consen 428 DAKTLVAARTNTSKDRLAYQAAVISENL-GGETFISEDLAIKILQETKESLARAKVLID-PQDLPLNILEIFKILLKFLG 505 (763)
T ss_pred hhhHHHHHhhcCchhHHHHHHhhhhhhh-ccccchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHHHHH
Confidence 11110 1 12 359999999999999999999999999997 89999999999999999998
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhHHHHHhhcCCCchhhHHHhhhhhhHHHHHHHHHHHHHhh
Q 004741 550 Q-YITEGLERARDSLTEAAALRERFVLGTSVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSIS 628 (732)
Q Consensus 550 ~-hi~~ale~al~~L~~~~~~~~~y~~~~~~~r~~~~~~~~~~e~~~~~~ep~l~~F~elV~~~d~I~~miq~~f~~ei~ 628 (732)
+ ||++|||+|+..++ .++ ++++|+ ++||++|++||+|+|||++||+.++.
T Consensus 506 ~~hv~~ale~a~~~is-------------------------~a~---~~vep~-l~Fl~~I~~~~~I~~l~s~~~~~~~i 556 (763)
T KOG3745|consen 506 QEHVDYALETALAGIS-------------------------SAD---TRVEPN-LYFLEVINKGDIILQLMSKFFKSELI 556 (763)
T ss_pred HHHHHHHHHHHhcCCC-------------------------hhh---cCCCcc-hHHHHHHHHhhHHHHHHHHHHhcccC
Confidence 8 99999999977653 334 356766 69999999999999999999999988
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 004741 629 RLLLPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYL 708 (732)
Q Consensus 629 ~~l~pl~~~~~~~~~~kk~~~~~lE~~v~~GL~~~I~~l~~~v~~iL~t~QkktDF~P~~~~~~~~~~pT~aC~~vv~~L 708 (732)
|.+--..+..++|+++|+.+++.||.+|+.||+++|++||+|+++||+++|||+||+|+.-+. ..+-|++|++||+||
T Consensus 557 P~i~~t~d~~~~~i~~kk~~i~~iE~~v~~gL~~tIn~li~~~~~il~~~qkk~df~p~s~~s--~~~~~~pa~~vVq~L 634 (763)
T KOG3745|consen 557 PLISVTPDKLSEVIQKKKSFIQSIEEKVAFGLDRTINVLIGHVKFILSTEQKKTDFKPDSINS--LTRDIEPAIRVVQFL 634 (763)
T ss_pred ccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccCc--chhhhHHHHHHHHHH
Confidence 765333335689999999999999999999999999999999999999999999999954332 456799999999999
Q ss_pred HHHHHHHHHcccchhHHHHhhhc
Q 004741 709 SRVLEAAFTALEGLNKQAFLTEL 731 (732)
Q Consensus 709 ~~~~~~l~~sldg~nl~vfl~El 731 (732)
..|+..+.+++||+||++|++|+
T Consensus 635 ~~~~~~l~~~~dg~nLd~~~~ei 657 (763)
T KOG3745|consen 635 GNHIEQLKGRLDGENLDVFLQEI 657 (763)
T ss_pred HHHHHHHHcccCCchHHHHHHHH
Confidence 99999999999999999999996
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.30 E-value=1.3e-08 Score=122.11 Aligned_cols=310 Identities=21% Similarity=0.279 Sum_probs=208.8
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHHhCCCCCccccCCCCCCchhhHHHHHHHHHHHhhchhhhcccCcccCCCCccccc
Q 004741 174 DHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRG 253 (732)
Q Consensus 174 dqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~kL~~la~e~~~~~~~p~~~~~~~~~~ 253 (732)
.+|..+++-|.|-..|..-++--..+..-.. .++++|...+ +.. +..+|....+.+.. ....|+
T Consensus 105 ~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~---~v~~~~~~~d-~~~---~a~~l~~m~~sL~~---------l~~~pd 168 (766)
T PF10191_consen 105 AQLAELDSVKSRMEAARETLQEADNWSTLSA---EVDDLFESGD-IAK---IADRLAEMQRSLAV---------LQDVPD 168 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHhcCC-HHH---HHHHHHHHHHHHHH---------HcCCCc
Confidence 4588999999999888887776444432101 2345565543 333 34444444433211 022456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHhhCCcchhhhhhhhhhhhhhcCCC
Q 004741 254 LEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQG 333 (732)
Q Consensus 254 ~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~k~~~Fid~~~~~~~~~~~l~~~~ 333 (732)
++.....++.+.+.||..+--+.-.+....|.+.-++|..|+....+....-+.|.+-|.--+ ...|......+
T Consensus 169 ~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l------~~~W~~~~~~~ 242 (766)
T PF10191_consen 169 YEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPL------QRLWQEYCQSD 242 (766)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HHHHHHHhhhc
Confidence 778889999999999999999999999999999999999999999888888888877664211 12232222111
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCchHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCCCCCCCcCcH
Q 004741 334 SQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQ---RVTAILDKLLVKPSLVNLPPMEEGGL 410 (732)
Q Consensus 334 ~~~~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~~Vm~~FvqrIf~q---~I~~~i~~lL~~a~~~s~~~~~~~~~ 410 (732)
.. .....-|..||+.++..++.|.+-+..|||++..++..++...+.. .+...|...+..+ +.
T Consensus 243 ~~---~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~-----------~~ 308 (766)
T PF10191_consen 243 QS---QSFAEWLPSFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRA-----------GP 308 (766)
T ss_pred cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhc-----------Cc
Confidence 11 2334668899999999999999999999999988666666656532 4555666666433 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC---c---ccHHHHHHHHhhHhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004741 411 LLYLRMLAVAYEKTQELARDLRTVGCG---D---LDIEGVTECLFTSHK---EEYPEHEQASLRQLYQAKIEELRSESQQ 481 (732)
Q Consensus 411 ~~YLr~L~~lY~~t~~lv~~L~~~~~~---~---~~l~~l~~~lF~~yl---~~Yl~~E~~~L~~~~~~~l~~~~~~~~~ 481 (732)
..-|..|-.+|.-|..|++.|...... . ..+.+++.-+|+||. ..|-+.|.++|.........++..-.
T Consensus 309 ~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~~~~~-- 386 (766)
T PF10191_consen 309 ETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPFKPYQQRYGELERRFLSAQLSALDLESAELS-- 386 (766)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHH--
Confidence 345888888999999999988765321 1 135667777777765 47999999999877665432221000
Q ss_pred ccccccccCCCCCccccCCCCccCHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHH
Q 004741 482 LSESSGTIGRSKGASVASSPQQISVTVVTEFVRWNEEALSRCTLFSSQPAALAANVRAV 540 (732)
Q Consensus 482 ~~~~~~~~~r~~~a~l~~~~~~lS~eva~~il~~~keal~Rc~~ls~~~~~~~~~v~~I 540 (732)
+.. ..+ .+-.-++..++.+|+.||..|+. +-.++.-+.+|
T Consensus 387 ----------------d~v-~~L-~~s~~k~f~lae~Av~RC~~fT~-G~~~~~Ll~Al 426 (766)
T PF10191_consen 387 ----------------DAV-RRL-EESIPKLFGLAEEAVDRCIAFTG-GYGVPGLLKAL 426 (766)
T ss_pred ----------------HHH-HHH-HHhHHHHHHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 000 112 23556789999999999999996 56676665544
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.63 E-value=2.8e-05 Score=86.61 Aligned_cols=330 Identities=16% Similarity=0.249 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHhhhhhccccccccccccccc
Q 004741 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKT-------LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQS 178 (732)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~-------l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~ 178 (732)
|+++..|..+-..++.++.++..+....-+.+... +.+.+..+.+++.++.++.++=..--..|..|-.-...
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~ 96 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQ 96 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999988888877633 44444445555555544444444444444455555667
Q ss_pred chhhhhhHHHHHHHHHHHHHHhCCCCCccccCCCCCCchhhHHHHHHHHHHHhhchhhhccc-CcccCCCCccccchHHH
Q 004741 179 ADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQ-GIQDMGNANASRGLEVA 257 (732)
Q Consensus 179 ~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~kL~~la~e~~~~~-~~p~~~~~~~~~~~e~~ 257 (732)
+|.-++.=..++-++++++.+.+....+..+ ... .+-.++|..++-...++.- ..+. ++ +.....
T Consensus 97 LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~---~~~-r~Y~e~a~~L~av~~L~~~-F~~yksi---------~~I~~L 162 (383)
T PF04100_consen 97 LDNAKRNLTQSITTLKRLQMLVTAVEQLKEL---AKK-RQYKEIASLLQAVKELLEH-FKPYKSI---------PQIAEL 162 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHc-CCHHHHHHHHHHHHHHHHH-HHcccCc---------HHHHHH
Confidence 7788888888899999998887532222222 111 1245788877777766632 2221 12 223445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------hc-cHHHHHHHHHHHhhccCcc--hHHHHHHhhCCcchhhhhhhhhhhhh
Q 004741 258 VANLQDYCNELENRLLSRFDAASQ------RR-ELSTMSECAKILSQFNRGT--SAMQHYVATRPMFIDVEVMNADVRLV 328 (732)
Q Consensus 258 ~~~Ie~~~e~fE~~LL~eF~~ay~------~~-D~~~M~~~A~iL~~fngG~--s~I~~fV~k~~~Fid~~~~~~~~~~~ 328 (732)
...+......+-..+...|+..+. .+ ....|+++..|+-.+.... ..|+-|+++. +..-...+
T Consensus 163 ~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~q--------L~eY~~iF 234 (383)
T PF04100_consen 163 SKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQ--------LKEYRRIF 234 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHH--------HHHHHHHH
Confidence 678888888888999999999872 11 3568899889998885433 3577666642 21111111
Q ss_pred hcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcC
Q 004741 329 LGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEG 408 (732)
Q Consensus 329 l~~~~~~~~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~~Vm~~FvqrIf~q~I~~~i~~lL~~a~~~s~~~~~~~ 408 (732)
-.+ .++ ...+.+++=|..++..++.--..-..|||..-.|=..++...+. .-..-+..+|.+.... .
T Consensus 235 ~~~--~e~---~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~-~Tr~dL~~iL~~~~~~-------~ 301 (383)
T PF04100_consen 235 REN--DEA---ASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCE-ITRKDLSEILSKRKSE-------L 301 (383)
T ss_pred ccc--ccc---cchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHH-HHHHHHHHHHhhcCCC-------C
Confidence 111 111 12355677788888888888778899999987777666665554 4455567777653221 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-hcC-C----------Cc-----ccHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Q 004741 409 GLLLYLRMLAVAYEKTQELARDLR-TVG-C----------GD-----LDIEGVTECLFTSHKEEYPEHEQASLRQLYQAK 471 (732)
Q Consensus 409 ~~~~YLr~L~~lY~~t~~lv~~L~-~~~-~----------~~-----~~l~~l~~~lF~~yl~~Yl~~E~~~L~~~~~~~ 471 (732)
+....|.+|+.+- .|=+.|. .+. . .+ ..+.+.+.+.|+|||.-|++.|-+.|.+.+...
T Consensus 302 dv~~Ll~aLq~T~----~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~ 377 (383)
T PF04100_consen 302 DVKLLLKALQKTL----EFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKF 377 (383)
T ss_pred cHHHHHHHHHHHH----HHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 5566776666543 3333332 121 0 00 146789999999999999999999999988887
Q ss_pred HHH
Q 004741 472 IEE 474 (732)
Q Consensus 472 l~~ 474 (732)
+.+
T Consensus 378 ~~~ 380 (383)
T PF04100_consen 378 ISE 380 (383)
T ss_pred Hhh
Confidence 753
No 5
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.096 Score=58.30 Aligned_cols=264 Identities=20% Similarity=0.232 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcch-------HHHHHHhhCCcchhhhhhhh--
Q 004741 253 GLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTS-------AMQHYVATRPMFIDVEVMNA-- 323 (732)
Q Consensus 253 ~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s-------~I~~fV~k~~~Fid~~~~~~-- 323 (732)
++.++...+|.+-+.+|.-.--+...++..++.+.-.++-.|+.....-.+ +-..|+.|- +-|.....-
T Consensus 172 efAe~qkQlE~~edRLEAlaqPrltda~a~~ktd~AQd~r~I~irIgRfkqLelqY~~Vq~k~ikQl--Wedfd~kQ~an 249 (828)
T KOG4182|consen 172 EFAERQKQLEDFEDRLEALAQPRLTDAFAEGKTDQAQDFRQIFIRIGRFKQLELQYRAVQKKFIKQL--WEDFDEKQGAN 249 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHhcchh
Confidence 455667788888888888777788889999999988888888876643332 223333331 000000000
Q ss_pred ---hhh---hhh--cCCC-CCCCCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCc-hHHHHHHHHHHH---HHHHHHHH
Q 004741 324 ---DVR---LVL--GDQG-SQASPSNVARGLASLYKEITDTVRKEAATITAVFPSP-NYVMSILVQRVL---EQRVTAIL 390 (732)
Q Consensus 324 ---~~~---~~l--~~~~-~~~~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p-~~Vm~~FvqrIf---~q~I~~~i 390 (732)
+++ ..+ +++- +....+....-|-.+|++++..|++|.+--...||+. .+..-+++-... .-..-.+|
T Consensus 250 klanersesqrlssgdEfQstssq~qfaq~LT~fYDeLL~~~eqe~KWCm~aF~ddym~l~~kliaE~lgaLgasf~a~i 329 (828)
T KOG4182|consen 250 KLANERSESQRLSSGDEFQSTSSQPQFAQFLTLFYDELLEHCEQEVKWCMNAFGDDYMPLPFKLIAELLGALGASFDAHI 329 (828)
T ss_pred hhhcchhhhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHhhhchhHHHHH
Confidence 000 011 1110 0111233445577899999999999999999999965 332222222221 11122233
Q ss_pred HHhhcCCCCC--------------CCCCCCcCcH---HHHHHHHHHHHHHHHHHHHHHhhcCCC-cc----cHHHHHHHH
Q 004741 391 DKLLVKPSLV--------------NLPPMEEGGL---LLYLRMLAVAYEKTQELARDLRTVGCG-DL----DIEGVTECL 448 (732)
Q Consensus 391 ~~lL~~a~~~--------------s~~~~~~~~~---~~YLr~L~~lY~~t~~lv~~L~~~~~~-~~----~l~~l~~~l 448 (732)
...+..+... ..| ++. ..+|..|-.++.-|..|...+.-.... ++ +.-+.+.+-
T Consensus 330 ~la~gda~~e~eaLAk~a~dl~Sgdlp----kgini~tkHLeaLiElh~iTgsfarniqhlfaEee~RiL~dtleAifep 405 (828)
T KOG4182|consen 330 LLALGDANEELEALAKFAKDLHSGDLP----KGINIFTKHLEALIELHHITGSFARNIQHLFAEEEHRILGDTLEAIFEP 405 (828)
T ss_pred HHHhccccHHHHHHHHHHHHhccCcCc----cchhHHHHHHHHHHHHhhcchhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333222110 000 111 223333334444455555555333211 11 111334455
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCC---ccccCCCCccC-HHHHHHHHHHHHHHHHHHH
Q 004741 449 FTSHKEEYPEHEQASLRQLYQAKIEELRSESQQLSESSGTIGRSKG---ASVASSPQQIS-VTVVTEFVRWNEEALSRCT 524 (732)
Q Consensus 449 F~~yl~~Yl~~E~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~---a~l~~~~~~lS-~eva~~il~~~keal~Rc~ 524 (732)
|++|+..|-..|..-|. +.+++..-+ |...|.-| +.++ ++.=. .|-.-+++.|.++|.+||.
T Consensus 406 FekF~QkYgklE~aiLS----seia~ldlr--------gavtrgvgang~elS--d~VR~lEESipklv~lLeaA~ERC~ 471 (828)
T KOG4182|consen 406 FEKFIQKYGKLEEAILS----SEIARLDLR--------GAVTRGVGANGAELS--DGVRHLEESIPKLVELLEAACERCA 471 (828)
T ss_pred HHHHHHHhhhHHHHHHH----HHHHHhhcc--------cccccccccCCCCcc--HHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 55566677777765443 223322211 11111111 1221 11111 2345578999999999999
Q ss_pred hhhcCchhHHHHH
Q 004741 525 LFSSQPAALAANV 537 (732)
Q Consensus 525 ~ls~~~~~~~~~v 537 (732)
-|.+ ....-+-+
T Consensus 472 gfTg-~~~a~eLI 483 (828)
T KOG4182|consen 472 GFTG-DLAACELI 483 (828)
T ss_pred cccC-cHHHHHHH
Confidence 9985 34444444
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.21 Score=58.32 Aligned_cols=345 Identities=17% Similarity=0.242 Sum_probs=199.2
Q ss_pred ChhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 95 FPEVDALSSLFKD--SCRELIDLRKQIDDRLFNLKKELSVQDS-------KHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 95 ~~~~~~li~tFe~--~i~eL~~L~~~~~~k~~~Le~~v~~~E~-------~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
|-.+.-+...|-. .+..+..|...++.++.++.+..+..=+ ++.+++.+++.-+.+++.+++.+-++--+-
T Consensus 19 f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~T 98 (793)
T KOG2180|consen 19 FNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAEST 98 (793)
T ss_pred hhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444555533 5666666666566666555554443333 445555555555555555555554444433
Q ss_pred cccccccccccccchhhhhhHHHHHHHHHHHHHHhCCCCCccccCCCCCCchhhHHHHHHHHHHHhhchhhhcccCcccC
Q 004741 166 GQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDM 245 (732)
Q Consensus 166 ~~~~v~lGdqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~kL~~la~e~~~~~~~p~~ 245 (732)
-..|..|-.-.-.+|--++.-..++-.+.+++...+....+..+ .+-.+-.|+|..++....+++--.+=.++
T Consensus 99 e~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l----~~kr~y~e~a~~lqai~~ll~~F~~Yk~v--- 171 (793)
T KOG2180|consen 99 EAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNAL----LSKRSYGEAASPLQAILQLLNHFIAYKSV--- 171 (793)
T ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhccHHHHHhHHHHHHHHHHHHHHhcch---
Confidence 34444454445556666666667777777777776421112112 11112346666666666666421111011
Q ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHhhccCcc--hHHHHHHhhCCcch
Q 004741 246 GNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRREL-------STMSECAKILSQFNRGT--SAMQHYVATRPMFI 316 (732)
Q Consensus 246 ~~~~~~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~-------~~M~~~A~iL~~fngG~--s~I~~fV~k~~~Fi 316 (732)
+....-.+.|.++-..+=..+..-|..++..+.. ....+.-.++.-+.|.. ..|+-|+.|+=
T Consensus 172 ------~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL--- 242 (793)
T KOG2180|consen 172 ------DEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQL--- 242 (793)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---
Confidence 1233445666777777777788889998887765 45566666666665543 46777766542
Q ss_pred hhhhhhhhhhhhhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 004741 317 DVEVMNADVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVK 396 (732)
Q Consensus 317 d~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~~Vm~~FvqrIf~q~I~~~i~~lL~~ 396 (732)
..-+..+-+|.+. ...+.+++-|..++..++.--..=..|||..-.|-..+...++++ -..-+..+|.+
T Consensus 243 -----~ey~~IF~en~E~-----a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~-Tr~~L~~Il~~ 311 (793)
T KOG2180|consen 243 -----EEYEQIFRENEEA-----ASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQ-TRKQLESILKR 311 (793)
T ss_pred -----HHHHHHHhccHhh-----hhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHH-HHHHHHHHHHH
Confidence 1111111122110 123457788999999999888888889998777666555544443 23345555543
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHH-hhcCCC-------c---------ccHHHHHHHHhhHhhhhhHHH
Q 004741 397 PSLVNLPPMEEGGLLLYLRMLAVAYEKTQELARDL-RTVGCG-------D---------LDIEGVTECLFTSHKEEYPEH 459 (732)
Q Consensus 397 a~~~s~~~~~~~~~~~YLr~L~~lY~~t~~lv~~L-~~~~~~-------~---------~~l~~l~~~lF~~yl~~Yl~~ 459 (732)
-.. +.+...+|. +-.+|..|=+-| +.++.| . ..++..+.++|+||++-|++.
T Consensus 312 ~~~-------~~~v~lll~----Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~ 380 (793)
T KOG2180|consen 312 RKK-------EPDVKLLLF----ALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIES 380 (793)
T ss_pred hhh-------CccHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhH
Confidence 211 124444444 445566666666 334211 0 135889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004741 460 EQASLRQLYQAKIEELRS 477 (732)
Q Consensus 460 E~~~L~~~~~~~l~~~~~ 477 (732)
+-+.|.++++..+.+.+.
T Consensus 381 qek~l~ellek~v~e~~~ 398 (793)
T KOG2180|consen 381 QEKELSELLEKFVSEEKW 398 (793)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999999876543
No 7
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.096 Score=61.04 Aligned_cols=266 Identities=11% Similarity=0.165 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccc
Q 004741 98 VDALSSLFKDSCRELIDLRKQIDDR-------LFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAA 170 (732)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k-------~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v 170 (732)
+..+++-+- .|.++..+-+++... ++.|-.+-..-|..--..|......+..+-..+++|-+.|.+.+..|=
T Consensus 23 ~~eli~d~t-~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe 101 (773)
T KOG0412|consen 23 VGELIRDLT-DISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAE 101 (773)
T ss_pred HHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 446777776 566665555544443 333333323333311256778888899999999999999999999999
Q ss_pred ccccccccchhhhhhHHHHHHHHHHHHHHhCCCCCccccCCCCCCchhhHHHHHHHHHHHhhchhhhcccCcccCCCCcc
Q 004741 171 KIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANA 250 (732)
Q Consensus 171 ~lGdqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~kL~~la~e~~~~~~~p~~~~~~~ 250 (732)
.+-++.+.+|..|.|..++...++-.-++-.- .......... +.-..||+-++..+.+.+..+... ..+.+ .|
T Consensus 102 ~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C---~~gv~~Al~s-eDyE~AA~~IhRflslD~~~i~~~-~~~~~--~~ 174 (773)
T KOG0412|consen 102 TVSGKVRALDLAQNRVNECLQRVDDVRDLKNC---IEGVDTALES-EDYEKAATHIHRFLSLDQALIESR-FAKQV--VP 174 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh-hhHHHHHHHHHHHHhcCHHHHhhh-hhhcc--CC
Confidence 99999999999999999998887776666420 0001111111 113478998888888776543211 00100 11
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHhhCCcchhhhh-----hhhhh
Q 004741 251 SRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEV-----MNADV 325 (732)
Q Consensus 251 ~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~k~~~Fid~~~-----~~~~~ 325 (732)
+.......+.|...++.+..-+=++|..|-+.+|...|-++-++--...-...-+++|.. |++.-. .+-.+
T Consensus 175 ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~----ylc~iIA~kar~~l~n 250 (773)
T KOG0412|consen 175 TSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSV----YLCQIIASKARKNLAN 250 (773)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHH----HHHHHHHHHHHHHHHH
Confidence 112244578899999999999999999999999999999999987666555556777764 332211 11110
Q ss_pred hhhhcCCCCCCCCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCch--HHHHH
Q 004741 326 RLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPN--YVMSI 376 (732)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~--~Vm~~ 376 (732)
..-+..++..-.......|-.+|+.+...++...+||........ .||.+
T Consensus 251 -~~~~~~~~~r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~~li~~i~~ 302 (773)
T KOG0412|consen 251 -VKAGMEDDNRRQVFFADTLTMLFEGVARIIEANQPILETYYGLKKLIDVIEK 302 (773)
T ss_pred -HHhccccCchhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCchhHHHHHHH
Confidence 000111110111234467889999999999999999999998654 35543
No 8
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=93.78 E-value=13 Score=40.87 Aligned_cols=102 Identities=15% Similarity=0.303 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHhhCCcchhhhhhhhhhhhhh----cCCCCCCC
Q 004741 262 QDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNADVRLVL----GDQGSQAS 337 (732)
Q Consensus 262 e~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~k~~~Fid~~~~~~~~~~~l----~~~~~~~~ 337 (732)
+..++.+..-++++|+.|-+.+|.++.-+|.+..-...-..-.++.|.. |++...-. ..+... +...+...
T Consensus 2 ~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~----yic~~Ia~-~ar~~~~~~~~~~~~~~~ 76 (324)
T smart00762 2 DEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSK----YICDIIAD-KARSLLNELAGASDDTRA 76 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHH----HHHHHHHH-HHHHHhhccccccccccc
Confidence 4567888999999999999999999999999999888766667777765 33321111 001011 11000111
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhHHhhcCC
Q 004741 338 PSNVARGLASLYKEITDTVRKEAATITAVFP 368 (732)
Q Consensus 338 ~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp 368 (732)
+......+-.+|+.|...++....+|.+.|.
T Consensus 77 ~~~~a~~lt~Lfe~ia~ii~~h~~~I~~~yG 107 (324)
T smart00762 77 AVFYADTLTHLFENVATIIEQHQPVIEKYYG 107 (324)
T ss_pred cchHHHHHHHHHHHHHHHHHhccHHHHHHcC
Confidence 2344577889999999999999999999997
No 9
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=93.42 E-value=0.96 Score=49.69 Aligned_cols=115 Identities=14% Similarity=0.286 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHhhCCcchhhhhhhhh---hhhhhcCCCCCCCC
Q 004741 262 QDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNAD---VRLVLGDQGSQASP 338 (732)
Q Consensus 262 e~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~k~~~Fid~~~~~~~---~~~~l~~~~~~~~~ 338 (732)
+..++.+..-++++|+.|-+.+|.+++-+|.+..-..+-..-.++.|.. |++...-... .....+.......+
T Consensus 2 ~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~----ylc~~i~~~~r~~~~~~~~~~~~~~~~ 77 (331)
T PF08318_consen 2 DEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSK----YLCDIIAEQSRKLLDSATSGSSDSRSP 77 (331)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHH----HHHHHHHHHHHHHHHhhcccccccccc
Confidence 5567888889999999999999999999999999999776667777765 3333211110 00011100011123
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhHHhhcCCCchHHHHHHHHHHH
Q 004741 339 SNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVL 382 (732)
Q Consensus 339 ~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~~Vm~~FvqrIf 382 (732)
......|-.+|+.|...++....+|++.|.... |..+++++-
T Consensus 78 ~~~~~~lt~LFe~ia~ii~~h~~lI~~~yG~~~--~~~vi~~Lq 119 (331)
T PF08318_consen 78 VFYADALTKLFEHIATIIEQHQPLIEKYYGPGY--MVYVIEKLQ 119 (331)
T ss_pred ccHHHHHHHHHHHHHHHHHHccHHHHHHcCCcH--HHHHHHHHH
Confidence 345678889999999999999999999999655 555555553
No 10
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=93.28 E-value=5.5 Score=42.94 Aligned_cols=188 Identities=13% Similarity=0.162 Sum_probs=108.7
Q ss_pred CCCcchhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHH
Q 004741 77 KRASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH---RKTLAELEKGVDGLFD 153 (732)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h---~~~l~~L~~~~~~~~~ 153 (732)
..+.|||.++....-++... -...++.....|..-.+-|+.++. .++.+.-..| -.++.++++.+..+..
T Consensus 9 F~~~FD~~~~~L~~l~~~~~----~~~~i~~~~ekLs~~ldvVe~~L~---~~I~~~s~~f~~a~~~v~el~~~l~~a~~ 81 (291)
T PF10475_consen 9 FDEDFDPVRYELEKLPEDEL----DLEDIEELQEKLSHYLDVVEKKLS---REISEKSDSFFQAMSSVQELQDELEEALV 81 (291)
T ss_pred cCCCCCchHHHHHhCCCccC----CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888665432222211 123455555555555555554444 4455555555 4457788889999999
Q ss_pred HHHHHhhhhhcccccccccccccccchhhhhhHHHHHHHHHHHHHHhCCCCCccccCCCCCCchhhHHHHHHHHHHHhhc
Q 004741 154 SFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFA 233 (732)
Q Consensus 154 ~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~kL~~la 233 (732)
.-..+-..+..+...++.-|=++-...+.|++..+....++-...+..... .+..+..+++ -..|-.++.....+.
T Consensus 82 ~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~---~l~~ll~~~d-y~~Al~li~~~~~~l 157 (291)
T PF10475_consen 82 ICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQS---RLQELLEEGD-YPGALDLIEECQQLL 157 (291)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence 999999999888888777776666777777776655555555444443111 1223333333 457777777777766
Q ss_pred hhhhcccCcccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 004741 234 EEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELST 287 (732)
Q Consensus 234 ~e~~~~~~~p~~~~~~~~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~ 287 (732)
.+. . |+ .-+..-...++.+.+.++..|=..|..-...-|.++
T Consensus 158 ~~l-~--~~---------~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~ 199 (291)
T PF10475_consen 158 EEL-K--GY---------SCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDK 199 (291)
T ss_pred Hhc-c--cc---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 542 1 11 112233456677777777766666665444444433
No 11
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=92.58 E-value=29 Score=41.60 Aligned_cols=283 Identities=14% Similarity=0.180 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhh
Q 004741 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVT 185 (732)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~r 185 (732)
+++++-=+.|+.+++++.-+...+.-++=..-.+++..++..++.+-+..+++.++++..-....++=++-+.+..+|+.
T Consensus 12 ~nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~ 91 (618)
T PF06419_consen 12 ENTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEE 91 (618)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555557788888888888888887777788888999999999999999999999998888888887777777777777
Q ss_pred HHHHHHHHHHHHH-HhCCCCCcccc-CCCCCCchhhHHHHHHHHHHHhhchhhhcccCcccCCCCccccchHHHHHHHHH
Q 004741 186 ASQTIDLIKYLME-FNSSPGDLMEL-SPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQD 263 (732)
Q Consensus 186 a~ea~~Li~~~~e-F~~~~~~l~~l-s~~f~dp~~~~eaA~ii~kL~~la~e~~~~~~~p~~~~~~~~~~~e~~~~~Ie~ 263 (732)
...=.+|+..|.+ |.=...+...| +....=++.--.+-.-+++.+.=|+.+.... -+. .+..-.+.....+++
T Consensus 92 ~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~-~~~----ag~~iM~~~~~~~e~ 166 (618)
T PF06419_consen 92 LELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTE-NQR----AGLEIMEQMSKYLER 166 (618)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-Cch----HHHHHHHHHHHHHHH
Confidence 7766667766655 43111111112 1100111122233333333343333332211 000 011123445566777
Q ss_pred HHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHhhcc-CcchHHHHHHhhCCcchhhhhhhhhhhhhhcCCC-----CC
Q 004741 264 YCNELENRLLSRFDAASQRR--ELSTMSECAKILSQFN-RGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQG-----SQ 335 (732)
Q Consensus 264 ~~e~fE~~LL~eF~~ay~~~--D~~~M~~~A~iL~~fn-gG~s~I~~fV~k~~~Fid~~~~~~~~~~~l~~~~-----~~ 335 (732)
-++.+=+-+..+|....... ....+++|-..|.+=- --..|++.|.+.|.--+-..++..- ..+.++ |.
T Consensus 167 a~erl~~w~q~e~~~l~~~~~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aL---t~g~~~~~~~rPI 243 (618)
T PF06419_consen 167 AYERLYRWVQRECRSLNLDNPEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDAL---TRGGPGGSPSRPI 243 (618)
T ss_pred HHHHHHHHHHHHHhhhhhcCcccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCCCCCCCCch
Confidence 77777777788887762211 2347888888776521 2346899888876532222222210 011111 11
Q ss_pred C-CCCchhhhHHHHHHHHHHHHHHHHhHHhhcCCCch------------------HHHHHHHHHHHHH---HHHHHHHHh
Q 004741 336 A-SPSNVARGLASLYKEITDTVRKEAATITAVFPSPN------------------YVMSILVQRVLEQ---RVTAILDKL 393 (732)
Q Consensus 336 ~-~~~~~~~~L~~~f~~I~~~v~~e~~iI~~VFp~p~------------------~Vm~~FvqrIf~q---~I~~~i~~l 393 (732)
. ..-+..+-..+++..|=.++-.|...++.+|.... ..+...+.+|++. .++.+|+++
T Consensus 244 el~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQv 323 (618)
T PF06419_consen 244 ELHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCRPLKIRVEQV 323 (618)
T ss_pred hhhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 0 11233466778899999999999999999997421 4677778888876 466678888
Q ss_pred hcC
Q 004741 394 LVK 396 (732)
Q Consensus 394 L~~ 396 (732)
+..
T Consensus 324 i~s 326 (618)
T PF06419_consen 324 ISS 326 (618)
T ss_pred HHc
Confidence 864
No 12
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=89.21 E-value=6.7 Score=37.16 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHH
Q 004741 108 SCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTAS 187 (732)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ 187 (732)
.++.|..=-+++++++..+-..-...=..+...+.+++.-++.+-.+.+.|...+..+...|+..-++++.....=.|..
T Consensus 34 ~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 34 PLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344433344444444444333334456666677777777777777888888888888888888888999998889999
Q ss_pred HHHHHHHHHHHHh
Q 004741 188 QTIDLIKYLMEFN 200 (732)
Q Consensus 188 ea~~Li~~~~eF~ 200 (732)
+|.+|++.-..|.
T Consensus 114 ~t~~LLR~~~r~l 126 (132)
T PF10392_consen 114 QTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877665
No 13
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.25 E-value=4.4 Score=38.23 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchh
Q 004741 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADA 181 (732)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~ 181 (732)
-..+=-|-+.|..-+..+-.+++++...++..-+.-.++|..+..++++..+--+...+.++.|...+.+||+.++.++.
T Consensus 31 sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 31 SDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455677888888888899999999999999999999999999999999999999999999999999999999887764
No 14
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=79.96 E-value=1.4e+02 Score=35.57 Aligned_cols=118 Identities=10% Similarity=0.112 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcCcHHHHHHHHHHHHH
Q 004741 343 RGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLAVAYE 422 (732)
Q Consensus 343 ~~L~~~f~~I~~~v~~e~~iI~~VFp~p~~Vm~~FvqrIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~YLr~L~~lY~ 422 (732)
+....+|+.|..+++-=.+.+-.++..+..++..|-.-+..+...-.|+..|..+ + |- ...=|..+..+-.
T Consensus 276 ~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~lI~~~L~~a--i---P~----~~~~l~~f~~v~~ 346 (593)
T PF06248_consen 276 PSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSELLISNCLSPA--I---PT----SASELQEFEEVLE 346 (593)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHHHhhCcCc--C---CC----CHHHHHHHHHHHH
Confidence 4457899999999888776666665555678888888888887788888888754 2 21 1233333445555
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004741 423 KTQELARDLRTVGCGDLDIEGVTECLFTSHKEEYPEHEQASLRQLYQAKIEELRS 477 (732)
Q Consensus 423 ~t~~lv~~L~~~~~~~~~l~~l~~~lF~~yl~~Yl~~E~~~L~~~~~~~l~~~~~ 477 (732)
.+.+|.+.|++.|.-..+- .-+..|.+ +.+..|.++.+...+..-+.
T Consensus 347 ~~~~Fe~~L~~lgf~~~~~-----~~L~~~~~---~i~~~f~~kr~~~iL~~AR~ 393 (593)
T PF06248_consen 347 SVEEFEEALKELGFLSSDN-----TELSEFVD---NIETHFANKRCQDILDKARD 393 (593)
T ss_pred HHHHHHHHHHHcCCcCCCc-----hHHHHHHH---hHHHHHHHHHHHHHHHHHHH
Confidence 7888999998887311110 12222333 24666777888888766554
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.41 E-value=2.1e+02 Score=33.48 Aligned_cols=81 Identities=10% Similarity=0.214 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccccccccccc-------chhhhhhHHHHHHH
Q 004741 120 DDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQS-------ADAQRVTASQTIDL 192 (732)
Q Consensus 120 ~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~-------~~~~R~ra~ea~~L 192 (732)
+.++..++..+...+......+.++...++.+.....+|+..++.+-..+..+|.+++. +...+..+...+..
T Consensus 194 ~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666667788888888888888888988888888888888877655 55555555555544
Q ss_pred HHHHHHHh
Q 004741 193 IKYLMEFN 200 (732)
Q Consensus 193 i~~~~eF~ 200 (732)
..--..|+
T Consensus 274 ~~~~~~~~ 281 (562)
T PHA02562 274 FQKVIKMY 281 (562)
T ss_pred HHHHHHHh
Confidence 44444444
No 16
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=64.83 E-value=72 Score=27.89 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQD-----------SKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E-----------~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
.|-++.+...+.+|..-+..+...++++..+.++.. ..|..+|..+.+.+..+.+..+.|..|+..+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366788888888888888777777776665443222 2388888888888888888888888887643
No 17
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=63.63 E-value=19 Score=42.19 Aligned_cols=44 Identities=9% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCccccccccccCC----CCHhHHHHhhhhhcCcCccc-ccccccCCCC
Q 004741 21 SIPLILDIDDFKGD----FSFDALFGNLVNELLPSFQE-EEADSADGHG 64 (732)
Q Consensus 21 ~~~~~~~~~~f~~~----f~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 64 (732)
=+-+++++.+=|.. =+|.+|+..++..++..++- ...-||.|++
T Consensus 293 LvklLinl~~~K~v~gItD~Ve~fl~d~s~~lvD~~~l~~~~~pg~g~~ 341 (557)
T PF01763_consen 293 LVKLLINLSEMKHVGGITDVVESFLQDVSPSLVDQNRLFDTRQPGFGGA 341 (557)
T ss_pred HHHHHHhcccCcccCCchhhHHHHHHhcccccccccccCCCCCCCCCCC
Confidence 35667888887763 57889999999998876554 3333555555
No 18
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=60.64 E-value=68 Score=27.54 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=45.1
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccc
Q 004741 100 ALSSLF--KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQT 168 (732)
Q Consensus 100 ~li~tF--e~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~ 168 (732)
.+.+.| ..++.++..+..++...+.....+.+..=-.+-..+....+.+..+-..+..|...++...+.
T Consensus 10 ~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 10 EYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455433 256788888888888888888777776666666666666666666666666666655554433
No 19
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=60.55 E-value=1.7e+02 Score=28.51 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccc
Q 004741 100 ALSSLFKDSCREL---IDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTA 169 (732)
Q Consensus 100 ~li~tFe~~i~eL---~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~ 169 (732)
..|.++-+|++-+ ..-+..+..++.+|-.+-...|++.-+.=..|-.+.+.-.++...||+.+..||..+
T Consensus 3 ~~It~w~~ALryv~~~v~~n~~~~~~Ir~Li~~Q~~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~~i 75 (150)
T PF10454_consen 3 STITTWPAALRYVMKTVAQNPEFLQRIRRLIKEQHDHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGGGI 75 (150)
T ss_pred hhhhcHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3788888887765 344678888899998888889999888888888899988899999999999988843
No 20
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=60.04 E-value=32 Score=29.15 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccch
Q 004741 115 LRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (732)
Q Consensus 115 L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~ 180 (732)
|..+..+=.+.|++...............|+..+..+-..=..|..+++..+..+-.+-++|+.+.
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555556666666666666677777777777777777777888888888888888877777543
No 21
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=59.93 E-value=3.5e+02 Score=31.83 Aligned_cols=133 Identities=9% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHhHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcCcHHHHHHHH--HHHHHHHHHHHHHHhhcCC
Q 004741 359 EAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRML--AVAYEKTQELARDLRTVGC 436 (732)
Q Consensus 359 e~~iI~~VFp~p~~Vm~~FvqrIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~YLr~L--~~lY~~t~~lv~~L~~~~~ 436 (732)
-...+...||+...|...|+. +|++.+..++..+..... +....|..| ...|.. +...+ +.
T Consensus 124 v~~~~~~cfPp~~~I~~~y~~-~YH~~l~~~l~~l~~~~l----------~~~~ll~ll~W~~~Y~~---~m~~~---~l 186 (566)
T PF06046_consen 124 VKDDVVPCFPPEYDIFNTYVS-MYHNALSDHLQELISPDL----------EANDLLSLLSWVNTYPS---IMGHP---DL 186 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCcccCCCCChHHHHHHH-HHHHHHHHHHHHHccCCC----------CHHHHhhheechhhChH---hhcCC---cc
Confidence 344677889999999999888 999999999998744321 112333333 333333 22211 11
Q ss_pred C-cccHH-HHHHHHhhHhhhhhHHHHHHHH----HHHHHHHHHHHHHhhhhccccccccCCCCCccccCCCCccCHHHHH
Q 004741 437 G-DLDIE-GVTECLFTSHKEEYPEHEQASL----RQLYQAKIEELRSESQQLSESSGTIGRSKGASVASSPQQISVTVVT 510 (732)
Q Consensus 437 ~-~~~l~-~l~~~lF~~yl~~Yl~~E~~~L----~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~a~l~~~~~~lS~eva~ 510 (732)
. ...+. -+..+.-..-+++|+......+ .+.++.....|.+.. .| -...++.+....+.
T Consensus 187 ~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~~~------~P---------e~~~dg~y~t~~~~ 251 (566)
T PF06046_consen 187 AIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKDWSEEK------EP---------EEDEDGYYHTPLPV 251 (566)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S-----------------EE-TTS-EE-HHHH
T ss_pred cchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------CC---------CcCCCCCeecCcHH
Confidence 1 11111 1222222334455666665544 445555556665421 01 01245677778888
Q ss_pred HHHHHHHHHHHHH
Q 004741 511 EFVRWNEEALSRC 523 (732)
Q Consensus 511 ~il~~~keal~Rc 523 (732)
.|+|...+-++.+
T Consensus 252 difqmi~qql~va 264 (566)
T PF06046_consen 252 DIFQMINQQLDVA 264 (566)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887777
No 22
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=59.79 E-value=48 Score=33.70 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccc
Q 004741 100 ALSSLFKDSCRELIDLRKQI--DDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQ 177 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~--~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe 177 (732)
.++..|.+--.+.+.|-+.+ +.|++++-..++..=.+|-..+++|+++++.+--- .++.+-+--.+|.
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~i----------Ltta~fqA~qKLk 116 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVI----------LTTACFQANQKLK 116 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 46666665544444444433 22334444444444556677788888888876442 2456778889999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhC
Q 004741 178 SADAQRVTASQTIDLIKYLMEFNS 201 (732)
Q Consensus 178 ~~~~~R~ra~ea~~Li~~~~eF~~ 201 (732)
+++.-++|++..-+||+|-+..++
T Consensus 117 si~~A~krpvsSEelIKyAHrIS~ 140 (272)
T KOG4552|consen 117 SIKEAEKRPVSSEELIKYAHRISK 140 (272)
T ss_pred HHHHHhcCCCCHHHHHHHHHHhhh
Confidence 999999999999999999988875
No 23
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=56.65 E-value=2.3e+02 Score=28.86 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=36.9
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 90 LAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH 137 (732)
Q Consensus 90 ~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h 137 (732)
.++|.|-....++..++.-++.|....+.+..+...|.....+.-..+
T Consensus 21 e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~ 68 (236)
T PF09325_consen 21 EPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSF 68 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888899999999999998888888888777776666554443
No 24
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=56.34 E-value=22 Score=30.46 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccc
Q 004741 118 QIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTA 169 (732)
Q Consensus 118 ~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~ 169 (732)
.++.|+..|+.+|..-+... ..+.+|.++++....+...|+.+++.+....
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777776655554 6677888888888888888888887765443
No 25
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.16 E-value=5.7e+02 Score=32.89 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHHHHH
Q 004741 136 KHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTI 190 (732)
Q Consensus 136 ~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ea~ 190 (732)
+-...+++|.++++++.+...++|.+|++|.+...--|.-||++.+.+..-..+.
T Consensus 1229 ~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~ 1283 (1758)
T KOG0994|consen 1229 QLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTY 1283 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999999999999998877655443
No 26
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.07 E-value=1.6e+02 Score=31.08 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=50.5
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 004741 89 GLAAPLFPEVDALSSLFKDSCRELIDLRKQI-------DDRLFNLKKE---LSVQDSKHRKTLAELEKGVDGLFDSFARL 158 (732)
Q Consensus 89 ~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~-------~~k~~~Le~~---v~~~E~~h~~~l~~L~~~~~~~~~~f~~L 158 (732)
||..|..-. .-|.-.+..|..|+.|-.+- +.++..|... -.+.|..|..++++|+++..++......|
T Consensus 216 ~D~~~~dh~--V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 216 GDRDPGDHM--VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred CCCCCcchH--HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666554 56777777777777654433 3445555432 23468899999999999999999988888
Q ss_pred hhhhh
Q 004741 159 DSRIS 163 (732)
Q Consensus 159 d~~i~ 163 (732)
...=+
T Consensus 294 ~~sKs 298 (305)
T KOG3990|consen 294 RNSKS 298 (305)
T ss_pred hcccc
Confidence 76433
No 27
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=52.85 E-value=1.6e+02 Score=35.77 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004741 645 MATAMSSAEAAAYKGLQQCIETVMAEVERLLSA 677 (732)
Q Consensus 645 kk~~~~~lE~~v~~GL~~~I~~l~~~v~~iL~t 677 (732)
|..+...|-.+-...+.+||+.+-..|+.-|..
T Consensus 629 k~~l~kvl~~y~~kev~k~i~~l~krveKHf~~ 661 (701)
T PF09763_consen 629 KQELKKVLKSYPSKEVRKGIEALYKRVEKHFSR 661 (701)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCC
Confidence 566777888888999999999999999998853
No 28
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=49.66 E-value=35 Score=30.55 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 107 DSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 107 ~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
..+.+|..-++.++.|+.++-..+...| .-..+.++.+.+..++.+|+.|...-.
T Consensus 41 el~~eL~~~ck~~r~~i~~li~~~~dee--~l~~lL~~ND~L~~~l~~Y~~l~~~~~ 95 (100)
T PF03127_consen 41 ELIQELYESCKSMRPRIQRLIEEVEDEE--LLGELLQANDELNQALERYDRLVKGQQ 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCH--HHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3677888889999999999998877766 899999999999999999999876543
No 29
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=43.98 E-value=2.1e+02 Score=25.60 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSV-------QDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~-------~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
.+-......+.+-..+-.++..++..|+..... ..+.-......|...|.+++..|+.+..+..
T Consensus 43 ~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 43 ELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888888888877652 3344455678899999999999999988765
No 30
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.52 E-value=3.9e+02 Score=27.65 Aligned_cols=170 Identities=12% Similarity=0.169 Sum_probs=97.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHhhhhhc
Q 004741 93 PLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVD--------GLFDSFARLDSRISS 164 (732)
Q Consensus 93 ~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~--------~~~~~f~~Ld~~i~~ 164 (732)
++++.+.+|+.....+-.-...|.+-++ +.+..|..|.+.|.+|.++.. .....|..+-..+..
T Consensus 2 ~P~~a~~~l~~Rl~~~~~~~~el~~~~k--------ERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~ 73 (228)
T cd07650 2 SPYEATEILRIRLSQIKLVNTELADWLQ--------ERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEF 73 (228)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Confidence 4556667777777666555555554444 457889999999999998753 344666777777777
Q ss_pred ccccccccccccccchhhhhhHHHHHHHHHHHHHHhCCCCC---------ccccCCCCCCchhhHHHHHHHHHHHhhchh
Q 004741 165 VGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGD---------LMELSPLFSDDSRVAEAASIAEKLRSFAEE 235 (732)
Q Consensus 165 V~~~~v~lGdqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~~---------l~~ls~~f~dp~~~~eaA~ii~kL~~la~e 235 (732)
+|..-..|.++|..-.. +-+.+|.+.... +..+.+.+.. .....+++-++....+..
T Consensus 74 ~a~~H~~la~~l~~~ve------------~~l~~~~~~~~~~~~l~~~q~l~~~~k~~~e--~~k~~~Kl~kk~~k~~~~ 139 (228)
T cd07650 74 IAASHGELAQRIETDVE------------EPLRDFATSTEFMNTLDDDQNLSNLAKELDE--SQKKWDKLKKKHSKASSK 139 (228)
T ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHhcCHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHH
Confidence 77766666666664332 222222211000 0000000100 011222333222222211
Q ss_pred hhcccCcccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcc
Q 004741 236 DIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGT 302 (732)
Q Consensus 236 ~~~~~~~p~~~~~~~~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~ 302 (732)
. .+.++..++......|...-.-|+ .++.-|.+++...=.+|+.|-.+.
T Consensus 140 ~-----------------~~~~~~~l~~~~~~We~~~~~~~e-~fQ~leeeRl~~lk~~l~~y~~~~ 188 (228)
T cd07650 140 A-----------------VSAAVSDLEEARQQWDSQAPFLFE-LLQAIDEERLNHLKDVLLQFQTHE 188 (228)
T ss_pred H-----------------HHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 0 122367788888888998888888 455568888888888888886443
No 31
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=43.44 E-value=1.1e+02 Score=33.73 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 101 LSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 101 li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
|...+...++.+..=-+.++..++++-.++...+..-.+....|..-++...+.|.+|+..|-
T Consensus 78 lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ 140 (333)
T PF05816_consen 78 LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIA 140 (333)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666777777777777777777777777777777777777777776665
No 32
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.00 E-value=1.7e+02 Score=33.25 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccc
Q 004741 94 LFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKK---ELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAA 170 (732)
Q Consensus 94 ~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~---~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v 170 (732)
..|+-...|..++.++++|..++..+..+..+|.. +...+..+-.+.+.+-++.+..+-......+.++...+....
T Consensus 155 l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~ 234 (420)
T COG4942 155 LNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234 (420)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34566678999999999999999999888887775 455556666777778888888888888899999999999999
Q ss_pred ccccccccchh
Q 004741 171 KIGDHLQSADA 181 (732)
Q Consensus 171 ~lGdqLe~~~~ 181 (732)
.|++.+.++..
T Consensus 235 ~L~~~Ias~e~ 245 (420)
T COG4942 235 RLKNEIASAEA 245 (420)
T ss_pred HHHHHHHHHHH
Confidence 99999988883
No 33
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=41.07 E-value=1.1e+02 Score=31.33 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchh
Q 004741 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADA 181 (732)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~ 181 (732)
++.=-.++++...++++.+.++..|+.++...+..|..++.+++.++-.--..+ +..++.. .++.+|++-..--.
T Consensus 66 l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~L---Eke~~e~--~i~~l~e~a~~el~ 140 (206)
T PF14988_consen 66 LQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARL---EKEASEL--KILQLGERAHKELK 140 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh--hHHHhHHHhhHHHH
Confidence 333346778888899999999999999999999999999999999876655544 3333221 33455555444445
Q ss_pred hhhhHHHHHHHHHHHHHHhC
Q 004741 182 QRVTASQTIDLIKYLMEFNS 201 (732)
Q Consensus 182 ~R~ra~ea~~Li~~~~eF~~ 201 (732)
.+..|.+. .-+++..+|..
T Consensus 141 ~k~~ale~-~A~~~l~e~~~ 159 (206)
T PF14988_consen 141 KKAQALEL-AAKKSLDEFTR 159 (206)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 56666655 24777777763
No 34
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=40.11 E-value=1.2e+02 Score=27.18 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHhhhhhccccc
Q 004741 146 KGVDGLFDSFARLDSRISSVGQT 168 (732)
Q Consensus 146 ~~~~~~~~~f~~Ld~~i~~V~~~ 168 (732)
.-+..+...|.+||+++-++++.
T Consensus 73 k~m~~i~~~FKQLEt~LKnlnt~ 95 (107)
T PRK15365 73 KDLKKIVSLFKQLEVRLKQLNAQ 95 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566678999999998877654
No 35
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=39.94 E-value=4.3e+02 Score=27.03 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=44.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhhhc
Q 004741 91 AAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELE--KGVDGLFDSFARLDSRISS 164 (732)
Q Consensus 91 ~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~--~~~~~~~~~f~~Ld~~i~~ 164 (732)
++|.|-+...++..+|..++.|..--+.+-.+...|........... ..|..+. ..+..++.+|.+.-.+++.
T Consensus 2 ~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~-~~L~~~E~~~~l~~~l~~~a~~~~~~~~ 76 (216)
T cd07627 2 PDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETL-EALSSLELSKSLSDLLAALAEVQKRIKE 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcchHhHHHHHHHHHHHHHHHH
Confidence 35778888889999999998888777777777766666554443322 1222222 4455555555555554443
No 36
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.50 E-value=2.6e+02 Score=24.64 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKE--LSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~--v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (732)
.|-..+...+.+...|.+.+...+.+|..- .+.......-...+|.+.+..+...|+.+-.++..
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888999999999999999998886 56666667788999999999999999998877654
No 37
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.20 E-value=3.7e+02 Score=26.49 Aligned_cols=140 Identities=10% Similarity=0.131 Sum_probs=63.4
Q ss_pred HHHHHhhhhhcccccccccccccccchhhhhhHHHHHHHHHHHHHHhCCCCCccccCCCCCCchhhHHHHHHHHHHHhhc
Q 004741 154 SFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFA 233 (732)
Q Consensus 154 ~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~kL~~la 233 (732)
-.+.|+..|+.+.+++-.+-..|-.-...-.+...|+.+++-+.-|..-|+.+.+. ....+ -..+..-.++.+.+-
T Consensus 41 ~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~---i~~~d-y~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 41 GTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLREC---IKKGD-YDQAINDYKKAKSLF 116 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHcCc-HHHHHHHHHHHHHHH
Confidence 35567777777666666664444443344444456666666666654422211110 00000 111122222222222
Q ss_pred hhhhcccCcccCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHh
Q 004741 234 EEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVA 310 (732)
Q Consensus 234 ~e~~~~~~~p~~~~~~~~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~ 310 (732)
..... ..+-+......++...+.+.+.|.+++.... .+.+.-.++...|.+++-..+-|-.|+.
T Consensus 117 ~~~~~-----------~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~--~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 117 EKYKQ-----------QVPVFQKVWSEVEKIIEEFREKLWEKLLSPP--SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred HHhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 11000 0112223333444444444445554444333 5677777888889888744444444443
No 38
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.81 E-value=4.2e+02 Score=26.29 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 92 APLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELS 131 (732)
Q Consensus 92 ~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~ 131 (732)
+|.|-...+++..|+..++.|......+-++...|.....
T Consensus 3 d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~ 42 (218)
T cd07596 3 DQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALG 42 (218)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999888888877777776665433
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=37.76 E-value=2e+02 Score=29.94 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccc
Q 004741 134 DSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSA 179 (732)
Q Consensus 134 E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~ 179 (732)
+..|..++..|..++..+-......+.++...-..+-.|-+.|...
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544444444444433
No 40
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.35 E-value=3.1e+02 Score=25.87 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQ--------DSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~--------E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
.+-+..+..+.+-..+-..+..++..|+...... .+........|.+.|.+++..|+.+..+..
T Consensus 41 ~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 41 ELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888888888776543 233355577899999999999999988776
No 41
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=36.24 E-value=2.7e+02 Score=28.80 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004741 115 LRKQIDDRLFNLKKELSV 132 (732)
Q Consensus 115 L~~~~~~k~~~Le~~v~~ 132 (732)
.-..++.-..+.+..|+.
T Consensus 119 ~~~~l~KaK~~Y~~~c~~ 136 (236)
T cd07651 119 QEKYLEKAREKYEADCSK 136 (236)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333433
No 42
>PF00745 GlutR_dimer: Glutamyl-tRNAGlu reductase, dimerisation domain; InterPro: IPR015896 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the helical dimerisation domain of glutamyl-tRNA reductase (1.2.1.70 from EC) []. This enzyme reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=35.94 E-value=2.1e+02 Score=25.04 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHhhc--CC-CchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcCcHHHHHHHHH
Q 004741 342 ARGLASLYKEITDTVRKEAATITAV--FP-SPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLA 418 (732)
Q Consensus 342 ~~~L~~~f~~I~~~v~~e~~iI~~V--Fp-~p~~Vm~~FvqrIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~YLr~L~ 418 (732)
.+.+.++...+..+++.|.+..-+- ++ .+..++..++.++....+...+..+=+.+.. ++...|++.+.
T Consensus 24 ~p~I~~l~~~~e~i~~~el~~~~~~l~~~~~~~~~i~~~~~~~~~Kllh~p~~~Lr~~a~~--------~~~~~~~~~l~ 95 (101)
T PF00745_consen 24 DPVIKALREKAEEIRDEELERALKKLDLDEDDEEVIEKLTRSLVNKLLHPPISNLREAAEE--------GDGDEYLEALR 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-S----------TTHHHHHHHHHHHHHHHHHHSS-TT--------TT-THHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHH
Confidence 4556788888888888886544333 43 4556999999999998888888877665433 34478999988
Q ss_pred HHHH
Q 004741 419 VAYE 422 (732)
Q Consensus 419 ~lY~ 422 (732)
.+|.
T Consensus 96 ~lF~ 99 (101)
T PF00745_consen 96 KLFG 99 (101)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8886
No 43
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.85 E-value=2.2e+02 Score=28.78 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=38.0
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 88 QGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH 137 (732)
Q Consensus 88 ~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h 137 (732)
|..++|=|-++.-++..|+..+..+.....++-++...|.....+.-..+
T Consensus 9 ~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~ 58 (200)
T cd07624 9 LKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIF 58 (200)
T ss_pred hcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456889999999999999999999888888888776666555444433
No 44
>PRK04098 sec-independent translocase; Provisional
Probab=35.72 E-value=2.2e+02 Score=28.10 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNL--KKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRI 162 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~L--e~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i 162 (732)
.+.|++-..+++++..-..++..+++- ..+.+++-.+|.+.+.+....++.. -.|+.||+-.
T Consensus 27 ~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~-~~~eel~~~~ 90 (158)
T PRK04098 27 QAMVDIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKK-LKFEELDDLK 90 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHh
Confidence 466666666666655544443332221 1233444455666666666666541 2344444443
No 45
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.26 E-value=1.9e+02 Score=29.30 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhhhhccccccccc
Q 004741 103 SLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH---RKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKI 172 (732)
Q Consensus 103 ~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h---~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~l 172 (732)
.+.+..+.+|+.+....+..-..|-.+++..|++- ..++..|+..+..+...++.|-.++........-+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 34567788888888899999999999888877764 56788999999999999999998888876654444
No 46
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.92 E-value=2.4e+02 Score=31.90 Aligned_cols=57 Identities=9% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
+..+...+.+++.-...++.++++| ..+|.+.+.-+...+++--.....||+.+|+.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~L-------k~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKL-------KEQYQREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444455544444444444444 44566677777888888888888999999863
No 47
>PF15463 ECM11: Extracellular mutant protein 11
Probab=34.55 E-value=2.6e+02 Score=26.73 Aligned_cols=55 Identities=13% Similarity=0.293 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004741 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFD 153 (732)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~ 153 (732)
+-|+..|...+..|+..+...-.+...++.++.+-+..=..+-..+.++++.+-.
T Consensus 79 d~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 79 DWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999998888777766666666666655543
No 48
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=34.31 E-value=13 Score=35.15 Aligned_cols=91 Identities=14% Similarity=0.297 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhh
Q 004741 107 DSCRELIDLRKQIDDRLFNLKKELSVQDSKH---RKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQR 183 (732)
Q Consensus 107 ~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h---~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R 183 (732)
.-.++|..+.+.+++..-++-+ ..=.+| +.++....+.++.+......+...|..|-..+...=+.++..-..|
T Consensus 30 ~L~~dL~~~~~~L~~~Li~lIN---~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~ 106 (133)
T PF06148_consen 30 DLRKDLRSYSKELKNELIELIN---DDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEER 106 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444332 111112 4555566666666666666777777776666666656666666667
Q ss_pred hhHHHHHHHHHHHHHHh
Q 004741 184 VTASQTIDLIKYLMEFN 200 (732)
Q Consensus 184 ~ra~ea~~Li~~~~eF~ 200 (732)
++..+...+++.+..+.
T Consensus 107 ~~l~~~k~~l~~~l~~~ 123 (133)
T PF06148_consen 107 KELREEKALLKLLLDIS 123 (133)
T ss_dssp HHHHHHHHT-SSSSHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 76666666665555554
No 49
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.92 E-value=1.7e+02 Score=26.62 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhHHHH--HHHHHHHhhhhhcccccccccccccccchh
Q 004741 137 HRKTLAELEKGVDGL--FDSFARLDSRISSVGQTAAKIGDHLQSADA 181 (732)
Q Consensus 137 h~~~l~~L~~~~~~~--~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~ 181 (732)
|..+|..++..++.+ .+.+++|.-.|+.+...+-.+..+|+.++.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444555555555555 555555555555555555555555555433
No 50
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=32.84 E-value=7.4e+02 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=24.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 91 AAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLK 127 (732)
Q Consensus 91 ~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le 127 (732)
++|+.| +++.+=-++..+++........+...+|
T Consensus 117 ~KP~~~---~~l~~rv~~~~q~k~~~~~~~~~~~~le 150 (360)
T COG3437 117 SKPISP---KELVARVSSHLQLKRNEDFLLDQNLYLE 150 (360)
T ss_pred cCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 5666666677777777777777777776
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.16 E-value=2.4e+02 Score=29.52 Aligned_cols=81 Identities=14% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHHH
Q 004741 109 CRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQ 188 (732)
Q Consensus 109 i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~e 188 (732)
|++|..--.+++....++-+++...|.+- +-|.++.+..+.+.+......+.+..|-+.+.++++-...+...|.+..+
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444433 55667777777777777777777777777777777777777888887765
Q ss_pred HH
Q 004741 189 TI 190 (732)
Q Consensus 189 a~ 190 (732)
.+
T Consensus 82 ~i 83 (230)
T PF10146_consen 82 KI 83 (230)
T ss_pred HH
Confidence 54
No 52
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=32.08 E-value=1.1e+02 Score=27.30 Aligned_cols=61 Identities=11% Similarity=0.267 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Q 004741 654 AAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSRVLEAAFTA 718 (732)
Q Consensus 654 ~~v~~GL~~~I~~l~~~v~~iL~t~QkktDF~P~~~~~~~~~~pT~aC~~vv~~L~~~~~~l~~s 718 (732)
.++..-+++..+.|+.+++-.+. +++.=|+==.. .....+-.||.+|.+++.+|+..+-..
T Consensus 4 ~~i~e~~~~e~s~LIEqiE~~i~--P~~S~F~CFa~--~~~~~~~~a~~kv~~W~~~k~k~~~~F 64 (100)
T PF06363_consen 4 PYIDEYYNIEMSELIEQIEAFIE--PRPSVFKCFAS--KVPTKIKTACDKVKSWVKNKMKSMLSF 64 (100)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHC--CCCChHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999885 44444432111 112346789999999999999877544
No 53
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=31.73 E-value=3.6e+02 Score=23.69 Aligned_cols=60 Identities=22% Similarity=0.430 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
.....|+++=.+|..+.+..+.|...+.... .+|.+.+.++.+.++-++.+-..|-.++.
T Consensus 22 ~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f----~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 22 QTLGRLNKTNEELLNLNDLSQQRLAEARERF----ARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999998877654 57888899999999999998888877765
No 54
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.62 E-value=2.6e+02 Score=29.43 Aligned_cols=64 Identities=11% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHhhh
Q 004741 98 VDALSSLFKDSCRELIDLRKQI--DDRLFNLKKELSVQDSKHRKTLAELE-------KGVDGLFDSFARLDSR 161 (732)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~--~~k~~~Le~~v~~~E~~h~~~l~~L~-------~~~~~~~~~f~~Ld~~ 161 (732)
+..-...++...+++..++.+. ...+++++..+.....+|...|..+. ..+..+++.|+.||..
T Consensus 125 l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~ 197 (261)
T cd07648 125 LQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEES 197 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 55
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=31.30 E-value=3.2e+02 Score=26.36 Aligned_cols=77 Identities=13% Similarity=0.263 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-Hhhhhhccccccccccccc
Q 004741 100 ALSSLFKDSCRELID-LRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFAR-LDSRISSVGQTAAKIGDHL 176 (732)
Q Consensus 100 ~li~tFe~~i~eL~~-L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~-Ld~~i~~V~~~~v~lGdqL 176 (732)
.+...+...+..+.. |...+......+..............+..+...+......+.. |+.+++.+...+...++.+
T Consensus 27 ~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 105 (202)
T PF01442_consen 27 EIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTSELDESLSERAEELKERLEARAEEL 105 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544 5555555556666655666666666666666666666665555 5555555544444444443
No 56
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=31.25 E-value=1.3e+02 Score=28.72 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 004741 107 DSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRI 162 (732)
Q Consensus 107 ~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i 162 (732)
..+.+++.+-.--+.-+++|+.+++.-+. .+..|..+++++...-..|+.||
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kds----ei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDS----EIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhccC
Confidence 33333333333333344444444443333 35667777777777777777664
No 57
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.21 E-value=4e+02 Score=26.64 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHhhHHHHHHHHHHHhhhhhccccccccccc----ccc
Q 004741 108 SCRELIDLRKQIDDRLFNLKKELSVQDSK-----HRKTLA-ELEKGVDGLFDSFARLDSRISSVGQTAAKIGD----HLQ 177 (732)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~E~~-----h~~~l~-~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd----qLe 177 (732)
.+.-+..+.+.+...+..++.-....|.. ....+. ++.++++.+.+.+..+.+.++.+-..+.+|-. .+.
T Consensus 62 ll~~~~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~ 141 (204)
T PF04740_consen 62 LLQGLILLLEEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSS 141 (204)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHH
Confidence 34444455555555554444433333321 134455 78889999999999999999887777666611 011
Q ss_pred cchhh-hhhHHHHHHHHHHHHHHhC
Q 004741 178 SADAQ-RVTASQTIDLIKYLMEFNS 201 (732)
Q Consensus 178 ~~~~~-R~ra~ea~~Li~~~~eF~~ 201 (732)
.+... ++.-.+..+.++-+.+|..
T Consensus 142 ~~~~~~~~~~~~l~~~lekL~~fd~ 166 (204)
T PF04740_consen 142 SFIDSLEKAKKKLQETLEKLRAFDQ 166 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111244566667777764
No 58
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.88 E-value=2.9e+02 Score=29.41 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
+...|..+..-.++.-+++.+++.|+.+|++---.=.+.-.+|+.-.+.--+-|.+||.|++.+
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455655555566666778888888887776544444443444444444556677888887643
No 59
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=30.43 E-value=5e+02 Score=28.34 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQD--------------SKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E--------------~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
+..-|.--+..|.+++..=++.++++..|+.++..++ ..|...+.+..+++..+.+.......+++
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777778887777775443 23445566778888888888888888888
Q ss_pred cccccccccccccccchhhhh-----hHHHHHHHHHHHHHH
Q 004741 164 SVGQTAAKIGDHLQSADAQRV-----TASQTIDLIKYLMEF 199 (732)
Q Consensus 164 ~V~~~~v~lGdqLe~~~~~R~-----ra~ea~~Li~~~~eF 199 (732)
..-+++-.+=..|+.+..+|- .+.+-..++.-+...
T Consensus 152 q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~~~ 192 (301)
T PF06120_consen 152 QMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLKGM 192 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777776555544 344444444444443
No 60
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.41 E-value=4.8e+02 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=15.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 138 RKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 138 ~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
+..+...+..++.+......||.+|..+
T Consensus 95 ~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 95 REDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666665544
No 61
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=30.37 E-value=1.1e+02 Score=29.26 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccccc
Q 004741 108 SCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKI 172 (732)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~l 172 (732)
|+.-|..-+.....+..++++.....+..=..-|.+-.+.|+.++.+|..+-..|+.--.++..+
T Consensus 27 al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l 91 (142)
T PF04048_consen 27 ALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL 91 (142)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455666666666666666677778888899999999999888888655555544
No 62
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=5.7e+02 Score=30.82 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccc
Q 004741 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQ 177 (732)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe 177 (732)
.+.++.|-+-+|.+-..-.+++.+..+.|+..--..=..-...|.+|-++++++...-++.|.++..---..-|+-+++|
T Consensus 177 ~eal~~ta~~~igeaeaFaE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE 256 (867)
T KOG2148|consen 177 MEALLGTAVLGIGEAEAFAERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIE 256 (867)
T ss_pred HHHHHhHHhhchhhHHHHHHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999988888875555555556778888889999988888888887764444444444444
Q ss_pred cchhhhhhHH----HHHHHHHHHHHHhCC----CCCcccc-CCCCCCchhhHHHH-HHHHHHHhhchhhhcccCcccCCC
Q 004741 178 SADAQRVTAS----QTIDLIKYLMEFNSS----PGDLMEL-SPLFSDDSRVAEAA-SIAEKLRSFAEEDIGRQGIQDMGN 247 (732)
Q Consensus 178 ~~~~~R~ra~----ea~~Li~~~~eF~~~----~~~l~~l-s~~f~dp~~~~eaA-~ii~kL~~la~e~~~~~~~p~~~~ 247 (732)
.+...-.... --+.||+-+..|-+. .+....| ...|.++++-.+|+ ..++.|..+-...+++. .
T Consensus 257 ~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~~~~ldp~----~-- 330 (867)
T KOG2148|consen 257 SIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAALTEGDFDEADQGIEACTWAAKALRQLMNPNLDPI----Y-- 330 (867)
T ss_pred HHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHhcccCCccccchhHHHHHHHHHHHHHhhcCCCCHH----H--
Confidence 3333211110 113455555555431 1222223 56778887433443 33444443332222210 0
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc---------------------HHHHHHHHHHHhhccC-----
Q 004741 248 ANASRGLEVAVANLQDYCNELENRLLSRFDAAS-QRRE---------------------LSTMSECAKILSQFNR----- 300 (732)
Q Consensus 248 ~~~~~~~e~~~~~Ie~~~e~fE~~LL~eF~~ay-~~~D---------------------~~~M~~~A~iL~~fng----- 300 (732)
.-.+.....++.++++.+.|-.++-.-.+.-+ .-|| ....+.+|+.+..++|
T Consensus 331 -l~m~Avkdqr~eleklk~~FvrrlssfLnnlF~~l~d~~ssd~~~hs~eL~lPnhs~~~r~l~pya~Lm~wlK~~d~k~ 409 (867)
T KOG2148|consen 331 -LNMRAVKDQRAELEKLKATFVRRLSSFLNNLFASLGDFLSSDKSYHSTELTLPNHSDLHRKLRPYARLMQWLKGLDKKC 409 (867)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHhhhhccccCCchHHHHhhhhHHHHHHHHhcCCccc
Confidence 00112334556788887888777655444321 1122 1367788998888875
Q ss_pred cchHHHHHHhhCCcchhhh
Q 004741 301 GTSAMQHYVATRPMFIDVE 319 (732)
Q Consensus 301 G~s~I~~fV~k~~~Fid~~ 319 (732)
+..+.+.|+..-...++++
T Consensus 410 ~~~l~k~Y~dslnlLy~Re 428 (867)
T KOG2148|consen 410 YGGLRKAYCDSLNLLYRRE 428 (867)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3346888887755444444
No 63
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=29.37 E-value=1.9e+02 Score=24.54 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFD 153 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~ 153 (732)
.|.+..+..+..+..+..=+.+|. ..|.+|.++|.+|.++......
T Consensus 13 ~l~~~~~~~~~~~~~l~~~~keRa--------~lE~~Yak~L~kl~~~~~~~~~ 58 (91)
T PF00611_consen 13 VLFKRLKQGIKLLEELASFFKERA--------SLEEEYAKSLQKLAKKFKKKMK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhcccc
Confidence 688888899888888887777665 5789999999999999887665
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.04 E-value=4.1e+02 Score=26.30 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHh
Q 004741 136 KHRKTLAELEKGVDGLFDSFARLD 159 (732)
Q Consensus 136 ~h~~~l~~L~~~~~~~~~~f~~Ld 159 (732)
....++..+...++.....|.+|.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554
No 65
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.90 E-value=8e+02 Score=26.88 Aligned_cols=142 Identities=12% Similarity=0.222 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcc-------cccccccccccccchhhhhhHHHHHH
Q 004741 119 IDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV-------GQTAAKIGDHLQSADAQRVTASQTID 191 (732)
Q Consensus 119 ~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V-------~~~~v~lGdqLe~~~~~R~ra~ea~~ 191 (732)
+......+..+...-+.++.+.+.+-.+....+...|..+++++... ............++...|+++.-+..
T Consensus 19 L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~ 98 (338)
T PF04124_consen 19 LSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLLLE 98 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555554444444433 33333344444455555777666655
Q ss_pred HHHHHHHHhCCCCCcccc---CCCCCCchhhHHHHHHHHHHHhhchhhhcccCcccCCCCccccchHHHHHHHHHHHHHH
Q 004741 192 LIKYLMEFNSSPGDLMEL---SPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQDYCNEL 268 (732)
Q Consensus 192 Li~~~~eF~~~~~~l~~l---s~~f~dp~~~~eaA~ii~kL~~la~e~~~~~~~p~~~~~~~~~~~e~~~~~Ie~~~e~f 268 (732)
=+.-+.+...- |.+... ...| .||=.+.....++...- |. .+-.......++.-...+
T Consensus 99 ~~~~l~diLEl-P~Lm~~ci~~g~y------~eALel~~~~~~L~~~~------~~------~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 99 NHDRLLDILEL-PQLMDTCIRNGNY------SEALELSAHVRRLQSRF------PN------IPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHhh-HHHHHHHHhcccH------hhHHHHHHHHHHHHHhc------cC------chhHHHHHHHHHHHHHHH
Confidence 55556666542 323221 1122 24444444444444331 11 111222344455555666
Q ss_pred HHHHHHHHHHH
Q 004741 269 ENRLLSRFDAA 279 (732)
Q Consensus 269 E~~LL~eF~~a 279 (732)
-+.|+..++..
T Consensus 160 l~~Li~~L~~~ 170 (338)
T PF04124_consen 160 LSQLINQLRTP 170 (338)
T ss_pred HHHHHHHHcCc
Confidence 67777777653
No 66
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.51 E-value=4.1e+02 Score=28.03 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 112 LIDLRKQIDDRLFNLKKELSVQDSKH-----RKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 112 L~~L~~~~~~k~~~Le~~v~~~E~~h-----~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
++..-..+++-....+..|+++|... .+.+.++..+.+.+-+.+....++.+
T Consensus 118 ~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~ 174 (261)
T cd07674 118 LQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYN 174 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555544 13344555555555554444444444
No 67
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.36 E-value=1.1e+03 Score=29.22 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHH-HHHHHHHHHHHHh
Q 004741 141 LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTAS-QTIDLIKYLMEFN 200 (732)
Q Consensus 141 l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~-ea~~Li~~~~eF~ 200 (732)
...|+-.++.+-.+.++|+.||.+|--.+-..-..++.++++|.+-+ +-..|-..+.|..
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999987666666667999999998776 4444544455554
No 68
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.21 E-value=2.2e+02 Score=31.86 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHHHHHHHhhhhhccccccccccccccc
Q 004741 142 AELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQS 178 (732)
Q Consensus 142 ~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~ 178 (732)
...+.++.++..+++++...++.-++....|.++||.
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 69
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=28.19 E-value=3.4e+02 Score=25.43 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccc
Q 004741 97 EVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQ-DSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQT 168 (732)
Q Consensus 97 ~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~-E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~ 168 (732)
+|+.++-.....+.++..+..++.+...+|...-... ...-...+..+...++..++.++.+--.|..+...
T Consensus 7 EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~g 79 (120)
T PF09969_consen 7 EANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLDPG 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcce
Confidence 6778888888888888888888888877776643332 22334456777777777777777776666655333
No 70
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.11 E-value=4.5e+02 Score=25.31 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=19.3
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhh
Q 004741 141 LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRV 184 (732)
Q Consensus 141 l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ 184 (732)
|..|...++.+-..+.....++..+..++-|+..+...+...|.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 33444444444444444444444444444444444444444433
No 71
>PHA03332 membrane glycoprotein; Provisional
Probab=27.74 E-value=2.7e+02 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHhhchh
Q 004741 219 VAEAASIAEKLRSFAEE 235 (732)
Q Consensus 219 ~~eaA~ii~kL~~la~e 235 (732)
...||.--|+|..|+..
T Consensus 978 ~~aaalyYQQlnsltnq 994 (1328)
T PHA03332 978 VMAAALYYQQLNSLTNQ 994 (1328)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666777777754
No 72
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.49 E-value=3.8e+02 Score=26.84 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccccccc-ccccchh
Q 004741 103 SLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGD-HLQSADA 181 (732)
Q Consensus 103 ~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd-qLe~~~~ 181 (732)
..+.+++++|...+ +...++.+|++++...+.+-...+.+|.. ....|+.+ ++-|+ ++.+...
T Consensus 12 ~~L~~~L~~l~~hq-~~~~~I~~L~~e~~~ld~~i~~~~~~L~~-----------~~~~L~~~----~~~~~~~~~~~~~ 75 (188)
T PF10018_consen 12 DELSSALEELQEHQ-ENQARIQQLRAEIEELDEQIRDILKQLKE-----------ARKELRTL----PDQADEKLKSIPK 75 (188)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH----HHHhhhccccccc
Confidence 44566666664444 34778888888777666543333333322 22222221 12222 2467777
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 004741 182 QRVTASQTIDLIKYLMEF 199 (732)
Q Consensus 182 ~R~ra~ea~~Li~~~~eF 199 (732)
..++.+...+||+|=+..
T Consensus 76 ~~~~~v~~~eLL~YA~rI 93 (188)
T PF10018_consen 76 AEKRPVDYEELLSYAHRI 93 (188)
T ss_pred cccCCCCHHHHHHHHHHH
Confidence 788888999999994443
No 73
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=27.23 E-value=2.8e+02 Score=33.82 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC-CCC
Q 004741 617 AIVQQYFANSISRLLLPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIA-PDH 695 (732)
Q Consensus 617 ~miq~~f~~ei~~~l~pl~~~~~~~~~~kk~~~~~lE~~v~~GL~~~I~~l~~~v~~iL~t~QkktDF~P~~~~~~-~~~ 695 (732)
.+|.+.++..+...++|+...++++.++.-......+..+...++.|++..++++-.-+.. -.. ..+|.|-... .+.
T Consensus 493 ~~i~~l~~~~~~~~l~pl~~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~-iL~-~Qkk~Df~p~~~~~ 570 (710)
T PF07393_consen 493 DTILQLLQIFYKEELLPLIQSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEF-ILS-EQKKTDFKPKEDDL 570 (710)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hcCCCCCCCCcccc
Confidence 3444555666666666666556666666666666666666666666666666666666543 223 4444443221 111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 004741 696 RPTNACTRVVAYLSRVLEAAFT 717 (732)
Q Consensus 696 ~pT~aC~~vv~~L~~~~~~l~~ 717 (732)
.+...|+.+|.-+-........
T Consensus 571 ~~~~~~T~ac~~vv~~L~~~~~ 592 (710)
T PF07393_consen 571 SLDQQPTPACQEVVEFLERHCS 592 (710)
T ss_pred ccccCCCHHHHHHHHHHHHHHH
Confidence 2223566666555554444433
No 74
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.95 E-value=7.7e+02 Score=26.01 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=39.7
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 88 QGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH 137 (732)
Q Consensus 88 ~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h 137 (732)
|--+++-|-++.-+..+|...+..+..+..++-++...+..+-++.-..|
T Consensus 46 v~~~d~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f 95 (240)
T cd07667 46 LRSRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVY 95 (240)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778899999999999999999999999998888877665444433
No 75
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.69 E-value=1.1e+03 Score=30.95 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccC
Q 004741 255 EVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNR 300 (732)
Q Consensus 255 e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fng 300 (732)
+.+..-|.+|+..|++++++=- -.+|.++=.|+.+++.
T Consensus 1114 ~~~~~d~~~~~~~~~~~~~~~~--------~~~~~~~n~~~~~~w~ 1151 (1311)
T TIGR00606 1114 ELVNKDLDIYYKTLDQAIMKFH--------SMKMEEINKIIRDLWR 1151 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 3467789999999999988522 2478888888888763
No 76
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=26.05 E-value=6.1e+02 Score=27.18 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccccccccc--ccc
Q 004741 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHL--QSA 179 (732)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqL--e~~ 179 (732)
-+-|...+.+|...-.-++.|..+|+.+..+++.=..+. +++.+ .|-.+.+.+.+.+++.+++- ...
T Consensus 91 keelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eq--------qql~~---sL~~r~~elk~~~~~~se~rv~~el 159 (268)
T PF11802_consen 91 KEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQ--------QQLLE---SLNKRHEELKNQVETFSESRVFQEL 159 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---HHHHHHHHHHHhhhccchHHHHHHH
Confidence 445666677777777777888888887666554322211 11111 23333333334444444442 122
Q ss_pred hhhhhhHH-HHHHHHHHHHHHhC
Q 004741 180 DAQRVTAS-QTIDLIKYLMEFNS 201 (732)
Q Consensus 180 ~~~R~ra~-ea~~Li~~~~eF~~ 201 (732)
.....++. .--+|+.++.+|..
T Consensus 160 ~~K~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 160 KTKIEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233332 23457888888875
No 77
>PRK11637 AmiB activator; Provisional
Probab=25.99 E-value=1e+03 Score=27.02 Aligned_cols=74 Identities=8% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhh
Q 004741 108 SCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQ 182 (732)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~ 182 (732)
.-++|..++.+++....++.. ......+-.+.+..+..++..+....+.++..|+.+-..+..+-.++......
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~-~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ-QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333331 12223333444666666666666666666666666666666666655555444
No 78
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.71 E-value=2e+02 Score=29.83 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004741 100 ALSSLFKDSCRELIDLRK 117 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~ 117 (732)
-.|+++-.-+.+|..+++
T Consensus 111 lvI~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 111 LVIRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468888899999999886
No 79
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.53 E-value=6.9e+02 Score=24.97 Aligned_cols=50 Identities=12% Similarity=0.269 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--cHH-HHHHHHHHHhhccCcchHHHHH
Q 004741 257 AVANLQDYCNELENRLLSRFDAASQRR--ELS-TMSECAKILSQFNRGTSAMQHY 308 (732)
Q Consensus 257 ~~~~Ie~~~e~fE~~LL~eF~~ay~~~--D~~-~M~~~A~iL~~fngG~s~I~~f 308 (732)
.++.-..-++.|.+.++++.++..+.. |+. .|..+|..=..| +..|++.|
T Consensus 127 ~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~--y~~~~~~W 179 (185)
T cd07628 127 EVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDF--YQGLVEDW 179 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 344555667899999998888755443 333 566666655555 33455555
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.31 E-value=3e+02 Score=34.88 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=75.7
Q ss_pred CccccccccccCCCCHhHHHHhhhh--hcCcCcccccc-----c--ccC--CCCCCCCCCCCCCCCC---CCcchhhhhh
Q 004741 22 IPLILDIDDFKGDFSFDALFGNLVN--ELLPSFQEEEA-----D--SAD--GHGNVSGNDTLPNGHK---RASSDAIKFT 87 (732)
Q Consensus 22 ~~~~~~~~~f~~~f~~~~~~~~l~~--~~~~~~~~~~~-----~--~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~ 87 (732)
+|.+|+.-.|.+.+-..-||+-+.= -+|-.++.+.. + |+- ---..+|...+.+||- -++.+|.+-
T Consensus 572 ~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r- 650 (1074)
T KOG0250|consen 572 FPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR- 650 (1074)
T ss_pred CCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC-
Confidence 8999999999877777777664321 11111111000 0 000 0001456666666662 234444411
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhc
Q 004741 88 QGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (732)
Q Consensus 88 ~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (732)
-|. .+-..|+..|+.|+....+.++++..++.+-++ |.+++.++.+.+..+.....+++.+|..
T Consensus 651 ----~~~-----~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~----~e~~l~e~~~~~~~l~~~~~q~~~~~~~ 714 (1074)
T KOG0250|consen 651 ----RPG-----VDEFSFDDEIEDLEREASRLQKEILELENQRRE----AEKNLEELEKKLRELSEHIEQIKRRIRK 714 (1074)
T ss_pred ----Ccc-----ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 467899999999999999999988777665554 4556666666666666666666666553
No 81
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.17 E-value=2.4e+02 Score=36.53 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCcchHHHHHHhh
Q 004741 254 LEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVAT 311 (732)
Q Consensus 254 ~e~~~~~Ie~~~e~fE~~LL~eF~~ay~~~D~~~M~~~A~iL~~fngG~s~I~~fV~k 311 (732)
+..+.+.+..|++.||...++-|+.+|+..+-..|+=.-.-|-.+ |+.+|.+.=|+-
T Consensus 610 ~~~~s~el~~~s~~f~~lAveLfd~cy~~de~~A~~LLt~el~~W-~~~tCL~LAv~a 666 (1381)
T KOG3614|consen 610 WHEAAKELKTLSDEFEGLAVELFDECYSSDEARALQLLTYELENW-GNSTCLQLAVEA 666 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHhhc-ccccHHHHHHhc
Confidence 445678899999999999999999999998877887777776666 788887755443
No 82
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.09 E-value=3.7e+02 Score=28.66 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004741 117 KQIDDRLFNLKKELSVQD 134 (732)
Q Consensus 117 ~~~~~k~~~Le~~v~~~E 134 (732)
..+++-..+.+..|+++|
T Consensus 130 ~~~~KaK~~Y~~~c~e~e 147 (269)
T cd07673 130 QALQKSKENYNAKCLEQE 147 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334344444444444444
No 83
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.08 E-value=4.7e+02 Score=31.91 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHhhhhhccc------cccc
Q 004741 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH-----RKTLAELEKGVDGLFDSFARLDSRISSVG------QTAA 170 (732)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h-----~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~------~~~v 170 (732)
...|..++.+|..=.+.+.+|-..|+.+.+..-.+- ..-...|.++++..++...++-.++++-- +.-.
T Consensus 230 ~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~ 309 (683)
T PF08580_consen 230 ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPS 309 (683)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchH
Confidence 456678889999999999999999988777654443 33344455555554443333333333221 1123
Q ss_pred ccccccccchhhhhhHHHHH
Q 004741 171 KIGDHLQSADAQRVTASQTI 190 (732)
Q Consensus 171 ~lGdqLe~~~~~R~ra~ea~ 190 (732)
.+++++++..+.+..+.-++
T Consensus 310 ~l~~~i~s~~~k~~~~~~~I 329 (683)
T PF08580_consen 310 KLSKQIESKEKKKSHYFPAI 329 (683)
T ss_pred HHHHHHHHHHHHHhccHHHH
Confidence 46788888888888887766
No 84
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=25.07 E-value=3.8e+02 Score=21.87 Aligned_cols=69 Identities=12% Similarity=0.218 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 97 EVDALSSLFKDSCRELIDLRKQIDDRLFNLKKEL-SVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 97 ~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v-~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
.+..+...|.....+|...-.++...+..|...= -..-..|.....++...+..+.+.+..+-..+...
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 77 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALRQA 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888888888877774210 11223444555555555555555555555554443
No 85
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=25.06 E-value=68 Score=29.15 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=6.8
Q ss_pred cccccccccccccccc
Q 004741 164 SVGQTAAKIGDHLQSA 179 (732)
Q Consensus 164 ~V~~~~v~lGdqLe~~ 179 (732)
.+.++.-.++++|+++
T Consensus 85 ~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 85 LILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3333334444454443
No 86
>PRK11637 AmiB activator; Provisional
Probab=24.95 E-value=3.6e+02 Score=30.63 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDS 135 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~ 135 (732)
.++..+....++|.....+++.+..+++....+.+.
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~ 205 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQA 205 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777877777777777766665444444
No 87
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.90 E-value=1.1e+03 Score=26.98 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 004741 101 LSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSF 155 (732)
Q Consensus 101 li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f 155 (732)
-|+-..+.+.+|..-....+..-..--++.+++|..|+.....|++++..-++.=
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444466666666665555555555555667777777777777777776655543
No 88
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=23.99 E-value=4.7e+02 Score=25.34 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=36.5
Q ss_pred chhhhhhcccCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004741 81 SDAIKFTQGLAAPLFPEVDALSSLFK--DSCRELIDLRKQIDDRLFNLKK-ELSVQDSKHRKTLAELEKGVDGLFDSFAR 157 (732)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~li~tFe--~~i~eL~~L~~~~~~k~~~Le~-~v~~~E~~h~~~l~~L~~~~~~~~~~f~~ 157 (732)
||-.++.+| ++.-|++-|| ...+++..|..-.. .+..+.. .+-.-...=..+|.++..+++++.+.-+.
T Consensus 13 fDHrpvIqg-------EI~~FvkEFE~KRgdRE~~~L~~~~~-~~~e~~e~~lp~~~~~~~~~L~~l~~~l~~a~~~~~~ 84 (145)
T PF14942_consen 13 FDHRPVIQG-------EIRYFVKEFEEKRGDREVRVLENLTE-MISETNEHILPRCIELMQQNLEQLLERLQAANSMCSR 84 (145)
T ss_pred cCchHHHHH-------HHHHHHHHHHHccCcHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666 7888999999 66677666654322 2222222 11121222233455555555555554444
Q ss_pred H
Q 004741 158 L 158 (732)
Q Consensus 158 L 158 (732)
|
T Consensus 85 l 85 (145)
T PF14942_consen 85 L 85 (145)
T ss_pred H
Confidence 3
No 89
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.93 E-value=2.7e+02 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcccccccc
Q 004741 129 ELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAK 171 (732)
Q Consensus 129 ~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~ 171 (732)
..+..|..|...+..|...+.+.-..-..|-.+++.+...+..
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777666666666666666666554444433
No 90
>PRK02224 chromosome segregation protein; Provisional
Probab=23.73 E-value=1.4e+03 Score=28.26 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=15.0
Q ss_pred HHHHhhhhhcccccccccccccccchhhhhhH
Q 004741 155 FARLDSRISSVGQTAAKIGDHLQSADAQRVTA 186 (732)
Q Consensus 155 f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra 186 (732)
+..|..++......+-.+...|+.+...+.+.
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l 679 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDL 679 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455544444443
No 91
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=23.72 E-value=5e+02 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Q 004741 132 VQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (732)
Q Consensus 132 ~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (732)
.+|.+|.++|.+|+..++.+.+.-..|..++.
T Consensus 42 sYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 42 SYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444443
No 92
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=23.38 E-value=6.7e+02 Score=27.53 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhhhh-hccccccccc
Q 004741 97 EVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLA---ELEKGVDGLFDSFARLDSRI-SSVGQTAAKI 172 (732)
Q Consensus 97 ~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~---~L~~~~~~~~~~f~~Ld~~i-~~V~~~~v~l 172 (732)
..+.+...|+++-.++..+-.++..-...|.+.+...+..|.++.. +|...+...-.....|+..+ ......+-
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~-- 162 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAE-- 162 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccc--
Confidence 4568999999999999999999999999999999999999988754 55555555555555555552 22233333
Q ss_pred cccc
Q 004741 173 GDHL 176 (732)
Q Consensus 173 GdqL 176 (732)
||++
T Consensus 163 ~d~~ 166 (333)
T PF05816_consen 163 GDQM 166 (333)
T ss_pred cCHH
Confidence 6664
No 93
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.12 E-value=1.9e+02 Score=23.43 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=6.2
Q ss_pred HHHHHHHhhHHHHHH
Q 004741 139 KTLAELEKGVDGLFD 153 (732)
Q Consensus 139 ~~l~~L~~~~~~~~~ 153 (732)
+.+.++.+.++++++
T Consensus 28 ~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 28 ESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.56 E-value=3.6e+02 Score=29.56 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.0
Q ss_pred CCHhHHHH
Q 004741 35 FSFDALFG 42 (732)
Q Consensus 35 f~~~~~~~ 42 (732)
+|+.+++.
T Consensus 54 ~sl~~~~~ 61 (325)
T PF08317_consen 54 PSLEDYVV 61 (325)
T ss_pred CCHHHHHH
Confidence 33333333
No 95
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.41 E-value=4.2e+02 Score=28.08 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHhhhhhccccccccccccc
Q 004741 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKT---LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHL 176 (732)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~---l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqL 176 (732)
.-+...|.-+.++...+++..+.+.+||+.-...|+.-+.+ +..+..+++.+++.-.=||+.+-.-- --|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke-------~ll 163 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE-------VLL 163 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHH
Confidence 34566777788888888899999999998777777666665 56777888888888777776665311 115
Q ss_pred ccchhhhhhH
Q 004741 177 QSADAQRVTA 186 (732)
Q Consensus 177 e~~~~~R~ra 186 (732)
+++.+-|.-|
T Consensus 164 esvqRLkdEa 173 (333)
T KOG1853|consen 164 ESVQRLKDEA 173 (333)
T ss_pred HHHHHHHHHH
Confidence 5666666544
No 96
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.08 E-value=4e+02 Score=28.84 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhcc
Q 004741 94 LFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (732)
Q Consensus 94 ~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (732)
+|++.++ ..|...+.|......++..++.|..++++--..-.+...+|...+..+......|+..++.+
T Consensus 112 ~l~~~~~---k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~ 180 (300)
T KOG2629|consen 112 FLGESKD---KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKL 180 (300)
T ss_pred hhCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
No 97
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=21.99 E-value=2.4e+02 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhhcCchhHHHHHHHHHH
Q 004741 511 EFVRWNEEALSRCTLFSSQPAALAANVRAVFT 542 (732)
Q Consensus 511 ~il~~~keal~Rc~~ls~~~~~~~~~v~~IF~ 542 (732)
++-+.++.|+.|+...-- +.+...|.+++|.
T Consensus 3 kvqhmtrsairrastiev-~~qa~qnlqelfv 33 (52)
T PF04272_consen 3 KVQHMTRSAIRRASTIEV-PQQARQNLQELFV 33 (52)
T ss_dssp HHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccC-CHHHHHHHHHHHH
Confidence 456789999999999875 7889999999886
No 98
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.97 E-value=3.4e+02 Score=24.70 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhhhhhccccc
Q 004741 109 CRELIDLRKQIDDRLFNLKKELSVQDSKH---RKTLAELEKGVDGLFDSFARLDSRISSVGQT 168 (732)
Q Consensus 109 i~eL~~L~~~~~~k~~~Le~~v~~~E~~h---~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~ 168 (732)
+..|..--.+.++|++++|. +.+| ++.+.+|+-.+.++-...+.|+.+|..|+..
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~-----~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALET-----KLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33343334445566666665 4445 5678888888888888888888888876543
No 99
>KOG3390 consensus General control of amino-acid synthesis 5-like 1 [Transcription]
Probab=21.61 E-value=2.8e+02 Score=25.16 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHhhhhhccccccccccccc
Q 004741 125 NLKKELSVQDSKHRKT-----LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHL 176 (732)
Q Consensus 125 ~Le~~v~~~E~~h~~~-----l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqL 176 (732)
+|.+..+.+...|... |..|..++.+++-.=..||+.+-+....+..+|.|-
T Consensus 18 elqEK~r~EAI~aA~~l~~alVdhlN~gVaqay~Nqkrld~E~k~l~~~~A~faKQT 74 (120)
T KOG3390|consen 18 ELQEKTRKEAIRAAARLADALVDHLNGGVAQAYVNQKRLDSEIKNLAITVAKFAKQT 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555 556788888998888999999888877777776653
No 100
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=21.58 E-value=8.3e+02 Score=25.55 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=52.0
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhh
Q 004741 88 QGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEK-----GVDGLFDSFARLDSRI 162 (732)
Q Consensus 88 ~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~-----~~~~~~~~f~~Ld~~i 162 (732)
+..++|+|-....++...|..+++|..--+.+-.+...|-. .=.++.+.+..|.. .+..++..|.++..+|
T Consensus 17 ~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~----~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki 92 (234)
T cd07664 17 MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSA----NTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKI 92 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHH
Confidence 44556888888899999999998888777766666655544 34455555555544 5777777777777777
Q ss_pred hcc
Q 004741 163 SSV 165 (732)
Q Consensus 163 ~~V 165 (732)
..+
T Consensus 93 ~~~ 95 (234)
T cd07664 93 DQL 95 (234)
T ss_pred HHH
Confidence 764
No 101
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.22 E-value=1.9e+02 Score=35.32 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhhcccccccccccccccchhhhhhHHHHHHHHH
Q 004741 141 LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIK 194 (732)
Q Consensus 141 l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~~~~R~ra~ea~~Li~ 194 (732)
|.......+++.....++..|++++|.-.+--++.|-+...+-..-.+|+.+++
T Consensus 82 L~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~ 135 (800)
T KOG2176|consen 82 LLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLT 135 (800)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344456677788888899999999999999888888887777776666666644
No 102
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.09 E-value=5.8e+02 Score=24.47 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004741 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFD 153 (732)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~L~~~~~~~~~ 153 (732)
|+--++.....-+++..+...++.++.++......+-..+..++..|...++.-++
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666655554
No 103
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=20.77 E-value=3.2e+02 Score=31.38 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccccccc
Q 004741 107 DSCRELIDLRKQIDDRLFNLKKELSV----------------QDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAA 170 (732)
Q Consensus 107 ~~i~eL~~L~~~~~~k~~~Le~~v~~----------------~E~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v 170 (732)
..-+-|++.+.++.+|...-|..-+. +-.+-.++|++|+..+..++++.++|.+.+-+++++++
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~ 324 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKST 324 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchh
Confidence 34455666666666665544432222 22334678999999999999999999999999999877
Q ss_pred ccccc
Q 004741 171 KIGDH 175 (732)
Q Consensus 171 ~lGdq 175 (732)
+.|.-
T Consensus 325 qt~tC 329 (472)
T KOG0709|consen 325 QTSTC 329 (472)
T ss_pred ccchh
Confidence 76643
No 104
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=20.45 E-value=5.3e+02 Score=24.81 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.4
Q ss_pred HHHHHHHhhHHHHH
Q 004741 139 KTLAELEKGVDGLF 152 (732)
Q Consensus 139 ~~l~~L~~~~~~~~ 152 (732)
.++.++...+....
T Consensus 133 ~~l~~~~~~l~~~~ 146 (202)
T PF01442_consen 133 ERLEELSEELTERA 146 (202)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhH
Confidence 33333444433333
No 105
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.39 E-value=5.8e+02 Score=24.28 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004741 64 GNVSGNDTLPNGHKRASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAE 143 (732)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~E~~h~~~l~~ 143 (732)
|.+.+.+.-.++ ..+.+||. ++++..-.-...|..--+.|..+-+.|.+.+++-|..-.+-+..
T Consensus 8 ~~l~~~~~rd~~-~leklds~---------------~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~ 71 (131)
T PF10158_consen 8 GSLNLPDSRDPE-VLEKLDSR---------------PVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQ 71 (131)
T ss_pred hhcCCCCCCChH-HHHccChH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHhhhhhcccccccccccccccc
Q 004741 144 LEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSA 179 (732)
Q Consensus 144 L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGdqLe~~ 179 (732)
+.++-+..-.-=..|.. |+.++..+.++..-|+.+
T Consensus 72 ~~erqk~~~k~ae~L~k-v~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 72 MVERQKRFAKFAEQLEK-VNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
No 106
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.01 E-value=8.1e+02 Score=25.78 Aligned_cols=10 Identities=40% Similarity=0.438 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 004741 221 EAASIAEKLR 230 (732)
Q Consensus 221 eaA~ii~kL~ 230 (732)
+|+.++..|.
T Consensus 230 ~~~e~L~~l~ 239 (242)
T cd07600 230 TAAELLEELL 239 (242)
T ss_pred HHHHHHHHHh
Confidence 6777766664
Done!