Citrus Sinensis ID: 004742

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730--
MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVGASQADAAKNN
cccHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHcc
cccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHcccHEEEHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHccccccEEEEEcccccccEEEccEEEEEEHEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccHHEEEHHcHHHHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHcccEHHEHcHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHcccc
MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKrefhletepTIEGLIVAMSLIGATCITTCSGAIAdwlgrrpmlIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPiyisetappeirgllntlpqftgCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFylpesprwlvsKGRMLEAKKVLQSLRGREDVAGEMALLVEGlgvggetsleeyiigpandlaadqdisadkdqiklygpeeglswiarpvtgqsivglgsrhgsmvdpLVTLFgsvheklpdqgsmrstlfphfgsmfsvggnqprneewdeeslvregdeypsdaaggdsddnlqsplisrqttsiekdmvppahgtlssmrhgsqvqgnagepvgmgiggGWQLAWKWSekegrdgkkeggFKRIylhqegvpashrgslvsmhgedvpvgGEVVQAAALVSQAALCSKelldqnpigpamihpsetaakgfswkdlaepgvKRALMVGVGIQILQQLSgingvlyytpqileqaGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFvmgfgpipnilcseifptRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIkvpetkgmplEVITEFFAvgasqadaaknn
MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDaaggdsddnlqSPLISrqttsiekdmvPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAvgasqadaaknn
MggaalvaiaaaignllQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMAllveglgvggetsleeYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSekegrdgkkeggfkRIYLHQEGVPASHRGSLVSMHGEDVPVGGEvvqaaalvsqaalCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVllsnlgissasasllisgiTTLLMLPSIAVAMRLMDISGRRtlllstipilitslvvlvlssviKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVGASQADAAKNN
****ALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVH**************************************************************************************************VGMGIGGGWQLAWKWS***********GFKRIYLHQEGV*******LVSMHGEDVPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVG**********
MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGE*******************IIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEK*********TLFPHFGSMFS***************************************************************************PVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDV****EV**AAALVS***********************************AEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITE***************
MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQ************************GDSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVGASQADAAKNN
*GGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQGSMRSTLFPHFGSMF*******************************************************************SQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCSKELLDQNPIG***IH*****AKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVG**********
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVGASQADAAKNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query732 2.2.26 [Sep-21-2011]
Q8LPQ8729 Monosaccharide-sensing pr yes no 0.983 0.987 0.766 0.0
Q9SD00729 Monosaccharide-sensing pr no no 0.957 0.961 0.619 0.0
Q96290734 Monosaccharide-sensing pr no no 0.972 0.970 0.629 0.0
C0SPB2457 Putative metabolite trans yes no 0.275 0.442 0.381 2e-34
Q9ZQP6580 Probable inositol transpo no no 0.310 0.391 0.392 1e-33
Q9C757580 Probable inositol transpo no no 0.296 0.374 0.386 1e-32
O23492582 Inositol transporter 4 OS no no 0.311 0.391 0.371 1e-31
P94493471 Putative metabolite trans no no 0.310 0.481 0.351 3e-30
P46333461 Probable metabolite trans no no 0.296 0.470 0.355 4e-30
Q8VZ80539 Polyol transporter 5 OS=A no no 0.288 0.391 0.35 1e-29
>sp|Q8LPQ8|MSSP2_ARATH Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2 Back     alignment and function desciption
 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/741 (76%), Positives = 644/741 (86%), Gaps = 21/741 (2%)

Query: 1   MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
           M GA LVAIAAA+GNLLQGWDNATIAGAVLYIK+EF+LE+ P++EGLIVAMSLIGAT IT
Sbjct: 1   MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLESNPSVEGLIVAMSLIGATLIT 60

Query: 61  TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
           TCSG +ADWLGRRPMLI+SS+LYF+G LVMLWSPNVYVLLL RLLDGFG+GL VTLVPIY
Sbjct: 61  TCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIY 120

Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
           ISETAPPEIRGLLNTLPQFTG  GMFL+YCMVFGMSLM +PSWRLMLGVLFIPSL++F L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMPSPSWRLMLGVLFIPSLVFFFL 180

Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
           T+F+LPESPRWLVSKGRMLEAK+VLQ LRGREDV+GEMALLVEGLG+GGET++EEYIIGP
Sbjct: 181 TVFFLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGEMALLVEGLGIGGETTIEEYIIGP 240

Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRH--------GSMVDPL 292
           A+++  D DI+ DKDQIKLYG EEGLSW+ARPV G S + + SRH        GS++DPL
Sbjct: 241 ADEVTDDHDIAVDKDQIKLYGAEEGLSWVARPVKGGSTMSVLSRHGSTMSRRQGSLIDPL 300

Query: 293 VTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGG 352
           VTLFGSVHEK+PD GSMRS LFPHFGSMFSVGGNQPR+E+WDEE+LV EG++YPSD  G 
Sbjct: 301 VTLFGSVHEKMPDTGSMRSALFPHFGSMFSVGGNQPRHEDWDEENLVGEGEDYPSD-HGD 359

Query: 353 DSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGE-PVGMGIGGGWQLAW 411
           DS+D+L SPLISRQTTS+EKDM   AHGTLS+ RHGSQVQG  GE    MGIGGGWQ+AW
Sbjct: 360 DSEDDLHSPLISRQTTSMEKDMPHTAHGTLSTFRHGSQVQGAQGEGAGSMGIGGGWQVAW 419

Query: 412 KWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAAL 471
           KW+E+E   G+KE          EG P S RGS+VS+ G D     + VQA+ALVSQ AL
Sbjct: 420 KWTEREDESGQKE----------EGFPGSRRGSIVSLPGGDGTGEADFVQASALVSQPAL 469

Query: 472 CSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLY 531
            SK+LL ++ IGPAM+HPSET  KG  W DL +PGVKRAL+VGVG+QILQQ SGINGVLY
Sbjct: 470 YSKDLLKEHTIGPAMVHPSET-TKGSIWHDLHDPGVKRALVVGVGLQILQQFSGINGVLY 528

Query: 532 YTPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLST 591
           YTPQILEQAGVG+LLSN+GISS+SASLLIS +TT +MLP+IAVAMRLMD+SGRRTLLL+T
Sbjct: 529 YTPQILEQAGVGILLSNMGISSSSASLLISALTTFVMLPAIAVAMRLMDLSGRRTLLLTT 588

Query: 592 IPILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVR 651
           IPILI SL+VLV+S+++ M S+VHA +STVSVVLYFC FVMGFGP PNILCSEIFPTRVR
Sbjct: 589 IPILIASLLVLVISNLVHMNSIVHAVLSTVSVVLYFCFFVMGFGPAPNILCSEIFPTRVR 648

Query: 652 GICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMP 711
           GICIAICAL FWI DIIVTYSLPVLL S+GLAGVFGMYA+VC ISW+FVFIKVPETKGMP
Sbjct: 649 GICIAICALTFWICDIIVTYSLPVLLKSIGLAGVFGMYAIVCCISWVFVFIKVPETKGMP 708

Query: 712 LEVITEFFAVGASQADAAKNN 732
           LEVITEFF+VGA QA+AAKN 
Sbjct: 709 LEVITEFFSVGARQAEAAKNE 729

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SD00|MSSP3_ARATH Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1 Back     alignment and function description
>sp|Q96290|MSSP1_ARATH Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2 Back     alignment and function description
>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1 Back     alignment and function description
>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1 Back     alignment and function description
>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1 Back     alignment and function description
>sp|P94493|YNCC_BACSU Putative metabolite transport protein YncC OS=Bacillus subtilis (strain 168) GN=yncC PE=3 SV=2 Back     alignment and function description
>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3 Back     alignment and function description
>sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query732
255559173740 sugar transporter, putative [Ricinus com 1.0 0.989 0.829 0.0
449475697733 PREDICTED: monosaccharide-sensing protei 0.990 0.989 0.803 0.0
449444423733 PREDICTED: monosaccharide-sensing protei 0.990 0.989 0.802 0.0
224102781740 predicted protein [Populus trichocarpa] 1.0 0.989 0.809 0.0
225428316739 PREDICTED: monosaccharide-sensing protei 0.995 0.986 0.782 0.0
401063425739 tonoplastic transporter 2 [Vitis vinifer 0.995 0.986 0.781 0.0
147853377739 hypothetical protein VITISV_042076 [Viti 0.995 0.986 0.778 0.0
225428318731 PREDICTED: monosaccharide-sensing protei 0.984 0.986 0.771 0.0
356516105738 PREDICTED: monosaccharide-sensing protei 0.998 0.990 0.776 0.0
224132450735 predicted protein [Populus trichocarpa] 0.993 0.989 0.790 0.0
>gi|255559173|ref|XP_002520608.1| sugar transporter, putative [Ricinus communis] gi|223540207|gb|EEF41781.1| sugar transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1201 bits (3106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/740 (82%), Positives = 677/740 (91%), Gaps = 8/740 (1%)

Query: 1   MGGAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCIT 60
           M GA LVA+AAA+GNLLQGWDNATIAGAVLYIKREF+LE+EPTIEGLIVA SLIGAT IT
Sbjct: 1   MSGAVLVAVAAAVGNLLQGWDNATIAGAVLYIKREFNLESEPTIEGLIVATSLIGATLIT 60

Query: 61  TCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIY 120
           TCSGAI+DWLGRRPMLI+SSVLYF+ G+VMLWSPNVY+LLLARLLDGFGIGLAVTLVP+Y
Sbjct: 61  TCSGAISDWLGRRPMLIISSVLYFLSGVVMLWSPNVYILLLARLLDGFGIGLAVTLVPVY 120

Query: 121 ISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVL 180
           ISETAPPEIRGLLNTLPQFTG  GMFL+YCMVFGMSL TAPSWRLMLGVLFIPSLIY  L
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLTTAPSWRLMLGVLFIPSLIYLAL 180

Query: 181 TIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMALLVEGLGVGGETSLEEYIIGP 240
           T+FYLPESPRWLVSKGRMLEAK+VLQ LRGREDV+GEMALLVEGLGVGGETS+EEYIIGP
Sbjct: 181 TLFYLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGEMALLVEGLGVGGETSIEEYIIGP 240

Query: 241 ANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSM-------VDPLV 293
           AN++  DQDIS DKD +KLYGPEEGLSW+A+PVTGQS +GL SR GS+       +DPLV
Sbjct: 241 ANEVVDDQDISVDKDHVKLYGPEEGLSWVAKPVTGQSTIGLVSRRGSLANQSMPLMDPLV 300

Query: 294 TLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGD 353
           TLFGSVHEKLP+ GSMRS LFPHFGSMFSVGGNQ RNEEWDEES  REG++Y SDA GGD
Sbjct: 301 TLFGSVHEKLPETGSMRSMLFPHFGSMFSVGGNQARNEEWDEESQTREGEDYQSDAGGGD 360

Query: 354 SDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMRHGSQVQGNAGEPVG-MGIGGGWQLAWK 412
           SDDNL+SPLISRQTTS++KD+VP AHG+LSSMRHGS +QGNAGEPVG  GIGGGWQLAWK
Sbjct: 361 SDDNLESPLISRQTTSMDKDLVPHAHGSLSSMRHGSLMQGNAGEPVGSAGIGGGWQLAWK 420

Query: 413 WSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALVSQAALC 472
           WSE+EG+DGKKEGGFKRIYLHQEGVP S RGSLVS+HG D P  GE +QAAALVSQ AL 
Sbjct: 421 WSEREGQDGKKEGGFKRIYLHQEGVPGSRRGSLVSLHGGDAPAEGEFIQAAALVSQPALF 480

Query: 473 SKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYY 532
           SKEL++Q+P+GPAMIHPSETAAKG SW DL EPGVK AL+VGVG+QILQQ SGINGVLYY
Sbjct: 481 SKELVNQHPVGPAMIHPSETAAKGPSWNDLFEPGVKHALVVGVGLQILQQFSGINGVLYY 540

Query: 533 TPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTI 592
           TPQILEQAGVGVLLS+LGISSASASLLIS ITTLLMLP IAVAMRLMDISGRR+LLL TI
Sbjct: 541 TPQILEQAGVGVLLSDLGISSASASLLISAITTLLMLPCIAVAMRLMDISGRRSLLLCTI 600

Query: 593 PILITSLVVLVLSSVIKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRG 652
           P+LI SL+VLVL S + +GSV++ASIST SV++YFCCFVMGFGPIPNILC+EIFPTRVRG
Sbjct: 601 PVLIVSLLVLVLGSAVNLGSVINASISTASVIVYFCCFVMGFGPIPNILCAEIFPTRVRG 660

Query: 653 ICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPL 712
           +CIAICAL FWIGDIIVTYSLPV+L S+GLAGVFG+YAVVC+IS +FV++KVPETKGMPL
Sbjct: 661 LCIAICALTFWIGDIIVTYSLPVMLKSIGLAGVFGLYAVVCIISLVFVYLKVPETKGMPL 720

Query: 713 EVITEFFAVGASQADAAKNN 732
           EVITEFF+VGA QA AAK+N
Sbjct: 721 EVITEFFSVGARQAAAAKDN 740

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449475697|ref|XP_004154526.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444423|ref|XP_004139974.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224102781|ref|XP_002312798.1| predicted protein [Populus trichocarpa] gi|222849206|gb|EEE86753.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428316|ref|XP_002282975.1| PREDICTED: monosaccharide-sensing protein 2 isoform 1 [Vitis vinifera] gi|310877834|gb|ADP37148.1| putative tonoplastic monosaccharide transporter [Vitis vinifera] Back     alignment and taxonomy information
>gi|401063425|gb|AFP89954.1| tonoplastic transporter 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147853377|emb|CAN80213.1| hypothetical protein VITISV_042076 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225428318|ref|XP_002282981.1| PREDICTED: monosaccharide-sensing protein 2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516105|ref|XP_003526737.1| PREDICTED: monosaccharide-sensing protein 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224132450|ref|XP_002328276.1| predicted protein [Populus trichocarpa] gi|222837791|gb|EEE76156.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query732
TAIR|locus:2030377734 TMT1 "tonoplast monosaccharide 0.941 0.938 0.555 1.3e-196
TAIR|locus:2009832580 INT2 "inositol transporter 2" 0.270 0.341 0.388 8.6e-55
TAIR|locus:2130689582 INT4 "inositol transporter 4" 0.269 0.338 0.361 4.6e-50
TIGR_CMR|CBU_0347463 CBU_0347 "d-xylose-proton symp 0.255 0.403 0.359 1e-49
TAIR|locus:2058193509 INT1 "inositol transporter 1" 0.25 0.359 0.405 1.3e-49
TAIR|locus:2058774580 INT3 "nositol transporter 3" [ 0.270 0.341 0.384 9.2e-49
TAIR|locus:2181422546 PGLCT "plastidic GLC transloca 0.263 0.353 0.355 2.8e-46
MGI|MGI:2146030637 Slc2a13 "solute carrier family 0.266 0.306 0.355 2.3e-45
TAIR|locus:2051443526 AT2G20780 [Arabidopsis thalian 0.266 0.370 0.368 2.5e-45
TAIR|locus:2046333508 AT2G18480 [Arabidopsis thalian 0.265 0.381 0.336 4e-45
TAIR|locus:2030377 TMT1 "tonoplast monosaccharide transporter1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
 Identities = 408/734 (55%), Positives = 492/734 (67%)

Query:    18 QGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLI 77
             QGWDNATIAGA++YI ++ +L T  +++GL+VAMSLIGAT ITTCSG I+DWLGRRPMLI
Sbjct:    18 QGWDNATIAGAMVYINKDLNLPT--SVQGLVVAMSLIGATVITTCSGPISDWLGRRPMLI 75

Query:    78 VSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLP 137
             +SSV+YF+ GL+MLWSPNVYVL  ARLL+GFG GLAVTLVP+YISETAPPEIRG LNTLP
Sbjct:    76 LSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAGLAVTLVPVYISETAPPEIRGQLNTLP 135

Query:   138 QFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGR 197
             QF G  GMFL+YCMVF MSL  +PSWR MLGVL IPSL+Y  LT+FYLPESPRWLVSKGR
Sbjct:   136 QFLGSGGMFLSYCMVFTMSLSDSPSWRAMLGVLSIPSLLYLFLTVFYLPESPRWLVSKGR 195

Query:   198 MLEAKKVLQSLRGREDVAGEMAXXXXXXXXXXXXXXXXYIIGPANDLAADQDI-SADKD- 255
             M EAK+VLQ L GREDV  EMA                 ++    D   D  + + D+D 
Sbjct:   196 MDEAKRVLQQLCGREDVTDEMALLVEGLDIGGEKTMEDLLV-TLEDHEGDDTLETVDEDG 254

Query:   256 QIKLYGPEEGLSWIARPVTGQ-SIVGLGSRHGSMV-------DPLVTLFGSVHEKLPDQG 307
             Q++LYG  E  S++ARPV  Q S +GL SRHGS+        DPLV LFGS+HEK+P+ G
Sbjct:   255 QMRLYGTHENQSYLARPVPEQNSSLGLRSRHGSLANQSMILKDPLVNLFGSLHEKMPEAG 314

Query:   308 -SMRSTLFPHFGSMFSVGGNQPRNE--EWD---EESLVREGDEYPSDAAGGDSDDN---L 358
              + RS +FPHFGSMFS   + P  +   W+   E    ++ D+Y +D   GD DD+   L
Sbjct:   315 GNTRSGIFPHFGSMFSTTADAPHGKPAHWEKDIESHYNKDNDDYATDDGAGDDDDSDNDL 374

Query:   359 QSPLISRQTTSIEKDMVPPAHGTLSSM--RHGSQVQGNAGEPVGMGIGGGWQLAWKWSXX 416
             +SPL+SRQTTS++KDM+P  H T  S                  MGIGGGW + +++   
Sbjct:   375 RSPLMSRQTTSMDKDMIP--HPTSGSTLSMRRHSTLMQGNGESSMGIGGGWHMGYRYEND 432

Query:   417 XXXXXXXXXXXXRIYLHQEGVPASHRGSLVSMHGEDVPVGGEXXXXXXXXXXXXXCSKEL 476
                         R YL ++G   S RGS++S+ G   P GG               S+ +
Sbjct:   433 EYK---------RYYLKEDGAE-SRRGSIISIPGG--PDGG-----GSYIHASALVSRSV 475

Query:   477 LDQNPI-GPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYYTPQ 535
             L    + G AM+ P + AA G  W  L EPGVKRAL+VGVGIQILQQ SGINGVLYYTPQ
Sbjct:   476 LGPKSVHGSAMVPPEKIAASGPLWSALLEPGVKRALVVGVGIQILQQFSGINGVLYYTPQ 535

Query:   536 ILEQAGVGVXXXXXXXXXXXXXXXXXXXTTLLMLPSIAVAMRLMDISGRRXXXXXXXXXX 595
             ILE+AGV +                   TTLLMLP+I VAMRLMD+SGRR          
Sbjct:   536 ILERAGVDILLSSLGLSSISASFLISGLTTLLMLPAIVVAMRLMDVSGRRSLLLWTIPVL 595

Query:   596 XXXXXXXXXXXXXKMGSVVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICI 655
                           +  VV+A++ST  VVLYFC FVMG+GPIPNILCSEIFPTRVRG+CI
Sbjct:   596 IVSLVVLVISELIHISKVVNAALSTGCVVLYFCFFVMGYGPIPNILCSEIFPTRVRGLCI 655

Query:   656 AICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKVPETKGMPLEVI 715
             AICA+VFWIGDIIVTYSLPVLL+S+GL GVF +YA VCVISWIFV++KVPETKGMPLEVI
Sbjct:   656 AICAMVFWIGDIIVTYSLPVLLSSIGLVGVFSIYAAVCVISWIFVYMKVPETKGMPLEVI 715

Query:   716 TEFFAVGA-SQADA 728
             T++FA GA +QA A
Sbjct:   716 TDYFAFGAQAQASA 729
GO:0005215 "transporter activity" evidence=IEA
GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISS
GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS
GO:0006810 "transport" evidence=IEA
GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0022857 "transmembrane transporter activity" evidence=IEA
GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0009624 "response to nematode" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TAIR|locus:2051443 AT2G20780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046333 AT2G18480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LPQ8MSSP2_ARATHNo assigned EC number0.76650.98360.9876yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IX.162.1
hypothetical protein (736 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 2e-45
TIGR00879481 TIGR00879, SP, MFS transporter, sugar porter (SP) 2e-41
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 6e-35
TIGR00879481 TIGR00879, SP, MFS transporter, sugar porter (SP) 5e-33
PRK10077479 PRK10077, xylE, D-xylose transporter XylE; Provisi 9e-31
PRK10077479 PRK10077, xylE, D-xylose transporter XylE; Provisi 8e-23
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 1e-21
TIGR00898505 TIGR00898, 2A0119, cation transport protein 1e-20
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 1e-15
TIGR00895398 TIGR00895, 2A0115, benzoate transport 3e-14
TIGR00883394 TIGR00883, 2A0106, metabolite-proton symporter 1e-12
TIGR00891405 TIGR00891, 2A0112, putative sialic acid transporte 6e-12
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 3e-11
PRK03893496 PRK03893, PRK03893, putative sialic acid transport 6e-11
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 2e-09
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 4e-09
TIGR00880141 TIGR00880, 2_A_01_02, Multidrug resistance protein 4e-09
COG0477338 COG0477, ProP, Permeases of the major facilitator 6e-07
cd06174 352 cd06174, MFS, The Major Facilitator Superfamily (M 2e-06
TIGR00711485 TIGR00711, efflux_EmrB, drug resistance transporte 4e-06
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 7e-06
PRK11551406 PRK11551, PRK11551, putative 3-hydroxyphenylpropio 3e-05
PRK15403413 PRK15403, PRK15403, multidrug efflux system protei 1e-04
pfam07690 346 pfam07690, MFS_1, Major Facilitator Superfamily 2e-04
TIGR00883394 TIGR00883, 2A0106, metabolite-proton symporter 2e-04
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 3e-04
TIGR00710385 TIGR00710, efflux_Bcr_CflA, drug resistance transp 3e-04
pfam03137582 pfam03137, OATP, Organic Anion Transporter Polypep 5e-04
COG2814394 COG2814, AraJ, Arabinose efflux permease [Carbohyd 5e-04
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 0.001
pfam13347425 pfam13347, MFS_2, MFS/sugar transport protein 0.002
COG2211467 COG2211, MelB, Na+/melibiose symporter and related 0.002
PRK15402406 PRK15402, PRK15402, multidrug efflux system transl 0.002
TIGR00887502 TIGR00887, 2A0109, phosphate:H+ symporter 0.002
PRK11652394 PRK11652, emrD, multidrug resistance protein D; Pr 0.002
TIGR00898505 TIGR00898, 2A0119, cation transport protein 0.003
PRK12307426 PRK12307, PRK12307, putative sialic acid transport 0.003
PRK11043401 PRK11043, PRK11043, putative transporter; Provisio 0.003
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information 
 Score =  168 bits (427), Expect = 2e-45
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 13/225 (5%)

Query: 7   VAIAAAIGNLLQGWDNATIAGAVLYIKREFH---------LETEPTIEGLIVAMSLIGAT 57
           +A+ AA+G  L G+D   I   +  IK                   + GLIV++  +G  
Sbjct: 1   LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60

Query: 58  CITTCSGAIADWLGRRPMLIVSSVLYFIGGLVMLWSP--NVYVLLLARLLDGFGIGLAVT 115
             +  +G + D  GR+  L++ +VL+ IG L+  ++   + Y+L++ R++ G G+G    
Sbjct: 61  IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120

Query: 116 LVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPS-WRLMLGVLFIPS 174
           LVP+YISE AP ++RG L +L Q     G+ +A  +  G++  +    WR+ LG+ F+P+
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180

Query: 175 LIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGREDVAGEMA 219
           ++  +  +F LPESPRWLV KG++ EA+ VL  LRG  DV  E+ 
Sbjct: 181 ILLLIGLLF-LPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQ 224

Length = 449
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family Back     alignment and domain information
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family Back     alignment and domain information
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional Back     alignment and domain information
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter Back     alignment and domain information
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein Back     alignment and domain information
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter Back     alignment and domain information
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family Back     alignment and domain information
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein Back     alignment and domain information
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter Back     alignment and domain information
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional Back     alignment and domain information
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 732
KOG0569485 consensus Permease of the major facilitator superf 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
KOG0254513 consensus Predicted transporter (major facilitator 100.0
PRK10077479 xylE D-xylose transporter XylE; Provisional 100.0
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 100.0
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 100.0
PRK10642490 proline/glycine betaine transporter; Provisional 100.0
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 100.0
PRK11663434 regulatory protein UhpC; Provisional 100.0
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 100.0
PRK12307426 putative sialic acid transporter; Provisional 100.0
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 100.0
PRK10406432 alpha-ketoglutarate transporter; Provisional 100.0
TIGR00893399 2A0114 d-galactonate transporter. 100.0
TIGR00891405 2A0112 putative sialic acid transporter. 100.0
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 100.0
PRK14995495 methyl viologen resistance protein SmvA; Provision 100.0
PRK03545390 putative arabinose transporter; Provisional 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
PRK09952438 shikimate transporter; Provisional 99.98
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.98
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.97
PRK03893496 putative sialic acid transporter; Provisional 99.97
PRK09705393 cynX putative cyanate transporter; Provisional 99.97
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.97
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.97
TIGR00895398 2A0115 benzoate transport. 99.97
PRK15075434 citrate-proton symporter; Provisional 99.97
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.97
PRK10091382 MFS transport protein AraJ; Provisional 99.97
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.97
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.97
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.96
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.96
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.96
PRK05122399 major facilitator superfamily transporter; Provisi 99.96
PRK10504471 putative transporter; Provisional 99.96
PRK03699394 putative transporter; Provisional 99.96
PRK10489417 enterobactin exporter EntS; Provisional 99.96
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.96
TIGR00900365 2A0121 H+ Antiporter protein. 99.96
PLN00028476 nitrate transmembrane transporter; Provisional 99.96
PRK12382392 putative transporter; Provisional 99.96
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.96
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.96
PRK03633381 putative MFS family transporter protein; Provision 99.96
PRK09874408 drug efflux system protein MdtG; Provisional 99.96
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.96
TIGR00897402 2A0118 polyol permease family. This family of prot 99.96
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.96
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.95
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.95
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 99.95
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.95
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.95
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.95
PRK11043401 putative transporter; Provisional 99.94
PRK15011393 sugar efflux transporter B; Provisional 99.94
PRK11010491 ampG muropeptide transporter; Validated 99.94
PRK10054395 putative transporter; Provisional 99.94
PRK11652394 emrD multidrug resistance protein D; Provisional 99.94
PRK11646400 multidrug resistance protein MdtH; Provisional 99.93
PRK10133438 L-fucose transporter; Provisional 99.93
PRK11195393 lysophospholipid transporter LplT; Provisional 99.93
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.93
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.93
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.93
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.93
KOG2532466 consensus Permease of the major facilitator superf 99.93
PRK11902402 ampG muropeptide transporter; Reviewed 99.93
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.92
TIGR00896355 CynX cyanate transporter. This family of proteins 99.92
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.92
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.91
KOG2533495 consensus Permease of the major facilitator superf 99.91
PRK09528420 lacY galactoside permease; Reviewed 99.91
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.91
PTZ00207591 hypothetical protein; Provisional 99.91
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.9
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.9
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.9
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.9
TIGR00901356 2A0125 AmpG-related permease. 99.89
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.88
TIGR00805633 oat sodium-independent organic anion transporter. 99.87
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.87
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.87
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.86
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.86
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.85
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.83
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.83
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.82
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.82
PRK09669444 putative symporter YagG; Provisional 99.8
PRK10429473 melibiose:sodium symporter; Provisional 99.8
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.78
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.77
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.77
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.77
KOG2615451 consensus Permease of the major facilitator superf 99.76
PRK09848448 glucuronide transporter; Provisional 99.74
PF13347428 MFS_2: MFS/sugar transport protein 99.74
PRK11462460 putative transporter; Provisional 99.72
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.72
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.64
KOG2563480 consensus Permease of the major facilitator superf 99.62
COG2211467 MelB Na+/melibiose symporter and related transport 99.59
COG2270438 Permeases of the major facilitator superfamily [Ge 99.58
PRK10642490 proline/glycine betaine transporter; Provisional 99.57
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.55
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.54
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.49
KOG2325488 consensus Predicted transporter/transmembrane prot 99.48
KOG3626735 consensus Organic anion transporter [Secondary met 99.47
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.37
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.36
PRK09528420 lacY galactoside permease; Reviewed 99.36
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.36
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.35
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.34
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.33
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.31
PRK11663 434 regulatory protein UhpC; Provisional 99.31
TIGR00895 398 2A0115 benzoate transport. 99.31
PRK05122399 major facilitator superfamily transporter; Provisi 99.29
PRK15011393 sugar efflux transporter B; Provisional 99.28
PRK03545 390 putative arabinose transporter; Provisional 99.28
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.27
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.27
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.27
PRK12382392 putative transporter; Provisional 99.26
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.26
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.25
TIGR00893 399 2A0114 d-galactonate transporter. 99.24
PRK09874408 drug efflux system protein MdtG; Provisional 99.24
PRK10054 395 putative transporter; Provisional 99.24
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.24
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.24
KOG2816463 consensus Predicted transporter ADD1 (major facili 99.24
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.23
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.23
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.23
PRK10504 471 putative transporter; Provisional 99.21
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.21
TIGR00891 405 2A0112 putative sialic acid transporter. 99.21
PLN00028 476 nitrate transmembrane transporter; Provisional 99.2
PRK03893 496 putative sialic acid transporter; Provisional 99.19
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 99.18
PRK10489417 enterobactin exporter EntS; Provisional 99.18
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.18
TIGR00900 365 2A0121 H+ Antiporter protein. 99.17
PRK10091 382 MFS transport protein AraJ; Provisional 99.17
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.16
PRK03633381 putative MFS family transporter protein; Provision 99.16
PRK12307 426 putative sialic acid transporter; Provisional 99.16
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.15
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.15
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.14
TIGR00897402 2A0118 polyol permease family. This family of prot 99.13
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.13
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.12
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.12
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.11
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 99.11
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.11
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.1
PRK11646 400 multidrug resistance protein MdtH; Provisional 99.09
PRK03699394 putative transporter; Provisional 99.09
PRK09705393 cynX putative cyanate transporter; Provisional 99.09
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.08
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.08
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.08
PRK09952438 shikimate transporter; Provisional 99.08
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.02
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.01
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 99.01
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.01
PRK15075434 citrate-proton symporter; Provisional 99.01
PRK11043 401 putative transporter; Provisional 99.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.0
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 98.98
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 98.97
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 98.97
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.97
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.96
PRK09584 500 tppB putative tripeptide transporter permease; Rev 98.95
PRK11195 393 lysophospholipid transporter LplT; Provisional 98.95
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.92
PRK10207 489 dipeptide/tripeptide permease B; Provisional 98.92
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.9
PRK11010491 ampG muropeptide transporter; Validated 98.89
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 98.89
TIGR00898505 2A0119 cation transport protein. 98.87
PRK10406432 alpha-ketoglutarate transporter; Provisional 98.87
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 98.86
COG0477338 ProP Permeases of the major facilitator superfamil 98.85
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 98.83
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 98.83
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 98.81
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 98.79
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.77
KOG0569485 consensus Permease of the major facilitator superf 98.76
TIGR00901356 2A0125 AmpG-related permease. 98.76
COG2223 417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.75
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.74
KOG1330 493 consensus Sugar transporter/spinster transmembrane 98.74
COG2270438 Permeases of the major facilitator superfamily [Ge 98.73
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.71
PRK10133 438 L-fucose transporter; Provisional 98.71
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.7
PRK09848448 glucuronide transporter; Provisional 98.67
PRK11902402 ampG muropeptide transporter; Reviewed 98.67
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.65
TIGR00896355 CynX cyanate transporter. This family of proteins 98.65
TIGR00805 633 oat sodium-independent organic anion transporter. 98.62
PTZ00207 591 hypothetical protein; Provisional 98.61
PRK10429473 melibiose:sodium symporter; Provisional 98.56
KOG0254 513 consensus Predicted transporter (major facilitator 98.56
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 98.56
KOG2615 451 consensus Permease of the major facilitator superf 98.55
PRK09669444 putative symporter YagG; Provisional 98.54
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 98.52
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.51
KOG3098461 consensus Uncharacterized conserved protein [Funct 98.51
KOG3762618 consensus Predicted transporter [General function 98.5
PF13347428 MFS_2: MFS/sugar transport protein 98.49
KOG2532 466 consensus Permease of the major facilitator superf 98.48
KOG3764 464 consensus Vesicular amine transporter [Intracellul 98.42
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 98.23
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 98.22
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 98.21
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 98.18
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.14
PRK11462460 putative transporter; Provisional 98.13
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 98.08
KOG0637498 consensus Sucrose transporter and related proteins 98.08
TIGR00926654 2A1704 Peptide:H+ symporter (also transports b-lac 98.07
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.06
KOG2816 463 consensus Predicted transporter ADD1 (major facili 98.06
KOG3762618 consensus Predicted transporter [General function 98.03
TIGR00788468 fbt folate/biopterin transporter. The only functio 98.03
COG2211467 MelB Na+/melibiose symporter and related transport 98.03
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 98.02
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 98.0
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 97.97
KOG2533 495 consensus Permease of the major facilitator superf 97.97
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 97.95
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 97.94
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 97.9
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.9
COG0738422 FucP Fucose permease [Carbohydrate transport and m 97.77
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 97.54
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.52
PF1283277 MFS_1_like: MFS_1 like family 97.5
KOG2325 488 consensus Predicted transporter/transmembrane prot 97.49
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 97.46
KOG2563 480 consensus Permease of the major facilitator superf 97.43
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 97.36
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 97.32
KOG3810433 consensus Micronutrient transporters (folate trans 97.02
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.61
COG0477 338 ProP Permeases of the major facilitator superfamil 96.6
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 96.37
PF1283277 MFS_1_like: MFS_1 like family 96.24
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 96.11
PRK03612521 spermidine synthase; Provisional 96.0
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 95.9
KOG3098461 consensus Uncharacterized conserved protein [Funct 95.87
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 95.79
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 95.74
PRK03612 521 spermidine synthase; Provisional 95.56
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 95.48
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 95.42
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 94.68
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 94.57
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 94.56
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 94.38
KOG0637 498 consensus Sucrose transporter and related proteins 94.08
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 94.02
COG3202509 ATP/ADP translocase [Energy production and convers 93.01
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 92.36
KOG3626 735 consensus Organic anion transporter [Secondary met 89.46
COG3202 509 ATP/ADP translocase [Energy production and convers 86.44
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 84.07
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 83.51
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 82.92
KOG1479 406 consensus Nucleoside transporter [Nucleotide trans 80.13
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-42  Score=389.30  Aligned_cols=447  Identities=30%  Similarity=0.508  Sum_probs=376.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCCchh----HHHHHHHHHHHHHHHHHHhHHHhhhhh
Q 004742            3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIK--------REFHLETEPT----IEGLIVAMSLIGATCITTCSGAIADWL   70 (732)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~I~--------~~lgl~~s~s----~~gll~Sl~~IG~~Ig~~~~g~LsDrf   70 (732)
                      +..+..+.++++.+-.|+....+++..+.+.        +.+|...++.    .++.+++++.+|.++|+++.+.++||+
T Consensus         8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~   87 (485)
T KOG0569|consen    8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF   87 (485)
T ss_pred             HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445666777777889999888888765433        3345322332    578899999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHH
Q 004742           71 GRRPMLIVSSVLYFIGGLVMLW---SPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFL  147 (732)
Q Consensus        71 GrRkvLLigllL~aIgslL~a~---a~s~~lLiI~R~l~G~g~G~~~~~~~alIaE~fP~k~RG~~~~~~~~~~~~G~~i  147 (732)
                      |||..+++..++..++.+++.+   .+++.+++++|++.|+..|......+.++.|..|++.||.+..+.+++.++|..+
T Consensus        88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll  167 (485)
T KOG0569|consen   88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL  167 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence            9999999998888887777765   5788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhc-ccccHHHHHHHHHhhcCcCchhHHHHHHhhhc
Q 004742          148 AYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVS-KGRMLEAKKVLQSLRGREDVAGEMALLVEGLG  226 (732)
Q Consensus       148 g~l~~l~~~l~~~~~Wr~~~~i~~~l~~i~~~l~~~~~~esp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (732)
                      ++....-..+.+...|.+.+.+..+++++.++ .+.++|||||||.. +++.++|++.++.+++.+|++.+..       
T Consensus       168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e-------  239 (485)
T KOG0569|consen  168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIE-------  239 (485)
T ss_pred             HHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHH-------
Confidence            98777777777888999999999999988665 47889999999988 8999999999999998875332221       


Q ss_pred             cccccchhhhhhccccccccccccchhhhhhcccCCcCCcccccccccccccccccCCCCCcCCcchhccccccccCCCC
Q 004742          227 VGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPLVTLFGSVHEKLPDQ  306 (732)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (732)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (485)
T KOG0569|consen  240 --------------------------------------------------------------------------------  239 (485)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccccccccccCCCCCCCcchhhhhhhccCCCCCCcCCCCCCCCCcCCcccccccccccccCCCCCCCCCcccc
Q 004742          307 GSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDSDDNLQSPLISRQTTSIEKDMVPPAHGTLSSMR  386 (732)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (732)
                                               +-++|..+.                                              
T Consensus       240 -------------------------~~~~e~~~~----------------------------------------------  248 (485)
T KOG0569|consen  240 -------------------------EMLREIEEE----------------------------------------------  248 (485)
T ss_pred             -------------------------HHHHHHHHh----------------------------------------------
Confidence                                     000000000                                              


Q ss_pred             cCccccCCCCCCcccccCCcccchhhhhhhhccCCcccCCcccccccccCCCCCCccceeeccccccchhhHHHHHHHHH
Q 004742          387 HGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGEDVPVGGEVVQAAALV  466 (732)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~s~~~~~~~~g~~~~~~~~l~  466 (732)
                                                                                                      
T Consensus       249 --------------------------------------------------------------------------------  248 (485)
T KOG0569|consen  249 --------------------------------------------------------------------------------  248 (485)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhhhhhhhhccCCCCcccCCCCcccccCCChhhhcc-cchhhHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHhcccch
Q 004742          467 SQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAE-PGVKRALMVGVGIQILQQLSGINGVLYYTPQILEQAGVGVL  545 (732)
Q Consensus       467 ~~~~~~~~~l~~e~~~~~~~~~~s~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  545 (732)
                                             +.++.+..++.++++ +..++...+++.+...+|++|++++.+|...+++++|+++ 
T Consensus       249 -----------------------~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~-  304 (485)
T KOG0569|consen  249 -----------------------ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTP-  304 (485)
T ss_pred             -----------------------ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCH-
Confidence                                   000112456777774 5678889999999999999999999999999999998774 


Q ss_pred             hcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHhhHHHHHHHHHHHHHHHHhhccc-chhhHHHHHHHH
Q 004742          546 LSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGS-VVHASISTVSVV  624 (732)
Q Consensus       546 ~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~  624 (732)
                               ..+...+...++..++.++++.+++||+|||++++.++.++.+..+++.......... .+..+..+.+++
T Consensus       305 ---------~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~  375 (485)
T KOG0569|consen  305 ---------EEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIF  375 (485)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                     6777778888999999999999999999999999999999999988887765544333 234455678889


Q ss_pred             HHHHHHhhcccchhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhc
Q 004742          625 LYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNSVGLAGVFGMYAVVCVISWIFVFIKV  704 (732)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~gi~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~  704 (732)
                      +|.+.|++|.+|+++.+.+|++|+..|+.+.+++.++.|+.+++....++.+.+..|. ..|++|++.++++.++.++.+
T Consensus       376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~l  454 (485)
T KOG0569|consen  376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYL  454 (485)
T ss_pred             HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999996 799999999999999999999


Q ss_pred             cCCCCCChhhhhhhhhcc
Q 004742          705 PETKGMPLEVITEFFAVG  722 (732)
Q Consensus       705 ~et~~~~~~~~~~~~~~~  722 (732)
                      ||||||+.+|+.+.++++
T Consensus       455 PETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  455 PETKGRTPYEIIEELEKR  472 (485)
T ss_pred             cccCCCCHHHHHHHHHhC
Confidence            999999999998888766

>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
4gby_A491 The Structure Of The Mfs (Major Facilitator Superfa 1e-21
4gby_A491 The Structure Of The Mfs (Major Facilitator Superfa 5e-12
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 31/223 (13%)
Query: 19  GWDNATIAGAVLYIKREF------HLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGR 72
           G+D A I+G V  +   F            ++ G  VA +LIG        G  ++  GR
Sbjct: 25  GYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84
Query: 73  RPMLIVSSVLYFIGGLVMLW--------SPN----VYV------LLLARLLDGFGIGLAV 114
           R  L +++VL+FI G+   W        +P+    VY+       ++ R++ G G+GLA 
Sbjct: 85  RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS 144
Query: 115 TLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGM------SLMTAPSWRLMLG 168
            L P+YI+E AP  IRG L +  QF    G  L YC+ + +      S +    WR M  
Sbjct: 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204
Query: 169 VLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGR 211
              IP+L+ F++ ++ +PESPRWL+S+G+  +A+ +L+ + G 
Sbjct: 205 SECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query732
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 1e-05
2cfq_A417 Lactose permease; transport, transport mechanism, 2e-05
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 Back     alignment and structure
 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 64  GAIADWLGRRPMLIVSSVLYFIGGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPIYISE 123
           G I+D +GRRP+++V   ++ +  LV + + ++ VL+ A  + G G G+   +      +
Sbjct: 56  GPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD 115

Query: 124 TAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLTIF 183
                     N+L      V   LA   + G  L T  +WR     L +           
Sbjct: 116 LYERTQLRHANSLLNMGILVSPLLA--PLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR 173

Query: 184 YLPES 188
           ++PE+
Sbjct: 174 WMPET 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query732
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 100.0
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.96
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.96
2xut_A524 Proton/peptide symporter family protein; transport 99.92
2cfq_A417 Lactose permease; transport, transport mechanism, 99.92
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.32
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.28
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.23
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.23
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.23
2cfq_A417 Lactose permease; transport, transport mechanism, 99.21
2xut_A 524 Proton/peptide symporter family protein; transport 99.14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
Probab=100.00  E-value=7.1e-46  Score=407.86  Aligned_cols=444  Identities=28%  Similarity=0.509  Sum_probs=350.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHH
Q 004742            3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLET------EPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPML   76 (732)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~I~~~lgl~~------s~s~~gll~Sl~~IG~~Ig~~~~g~LsDrfGrRkvL   76 (732)
                      ..+.++++++++.++.|+|.+.++.++|.+.++++.+.      +..+.|++.+++.+|..++++++|+++||+|||+++
T Consensus         9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l   88 (491)
T 4gc0_A            9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            35667778889999999999999999999999885421      345789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHH
Q 004742           77 IVSSVLYFIGGLVML------------------WSPNVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQ  138 (732)
Q Consensus        77 LigllL~aIgslL~a------------------~a~s~~lLiI~R~l~G~g~G~~~~~~~alIaE~fP~k~RG~~~~~~~  138 (732)
                      +++.+++.+++++++                  +++++++++++|+++|++.|+..+...+++.|+.|+++|++..++.+
T Consensus        89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~  168 (491)
T 4gc0_A           89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ  168 (491)
T ss_dssp             HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence            999999999999998                  47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHHHHHHhhccCCchhhhcccccHHHHHHHHHhhcCc
Q 004742          139 FTGCVGMFLAYCMVFGMSLM------TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPRWLVSKGRMLEAKKVLQSLRGRE  212 (732)
Q Consensus       139 ~~~~~G~~ig~l~~l~~~l~------~~~~Wr~~~~i~~~l~~i~~~l~~~~~~esp~~l~~~~~~~~~~~~~~~~~~~~  212 (732)
                      .+..+|.+++..........      ....||+.+.+..++.++.+ +..+++||||+|+..+++.+++++.+++....+
T Consensus       169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            99999999996665544322      23478999988888777755 457889999999999999999998888765433


Q ss_pred             CchhHHHHHHhhhccccccchhhhhhccccccccccccchhhhhhcccCCcCCcccccccccccccccccCCCCCcCCcc
Q 004742          213 DVAGEMALLVEGLGVGGETSLEEYIIGPANDLAADQDISADKDQIKLYGPEEGLSWIARPVTGQSIVGLGSRHGSMVDPL  292 (732)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  292 (732)
                      ....+..                                +.++.                                    
T Consensus       248 ~~~~~~~--------------------------------~~~~~------------------------------------  259 (491)
T 4gc0_A          248 LATQAVQ--------------------------------EIKHS------------------------------------  259 (491)
T ss_dssp             HHHHHHH--------------------------------HHHHH------------------------------------
T ss_pred             hhHHHHH--------------------------------HHHHH------------------------------------
Confidence            1110000                                00000                                    


Q ss_pred             hhccccccccCCCCCCCccccccccccccccCCCCCCCcchhhhhhhccCCCCCCcCCCCCCCCCcCCcccccccccccc
Q 004742          293 VTLFGSVHEKLPDQGSMRSTLFPHFGSMFSVGGNQPRNEEWDEESLVREGDEYPSDAAGGDSDDNLQSPLISRQTTSIEK  372 (732)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (732)
                                                              .+++                                    
T Consensus       260 ----------------------------------------~~~~------------------------------------  263 (491)
T 4gc0_A          260 ----------------------------------------LDHG------------------------------------  263 (491)
T ss_dssp             ----------------------------------------HHHH------------------------------------
T ss_pred             ----------------------------------------HHhh------------------------------------
Confidence                                                    0000                                    


Q ss_pred             cCCCCCCCCCcccccCccccCCCCCCcccccCCcccchhhhhhhhccCCcccCCcccccccccCCCCCCccceeeccccc
Q 004742          373 DMVPPAHGTLSSMRHGSQVQGNAGEPVGMGIGGGWQLAWKWSEKEGRDGKKEGGFKRIYLHQEGVPASHRGSLVSMHGED  452 (732)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~s~~~~~  452 (732)
                                                                                                      
T Consensus       264 --------------------------------------------------------------------------------  263 (491)
T 4gc0_A          264 --------------------------------------------------------------------------------  263 (491)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhccCCCCcccCCCCcccccCCChhhhcccchhhHHHHHHHHHHHHHhhhhHHHHHh
Q 004742          453 VPVGGEVVQAAALVSQAALCSKELLDQNPIGPAMIHPSETAAKGFSWKDLAEPGVKRALMVGVGIQILQQLSGINGVLYY  532 (732)
Q Consensus       453 ~~~g~~~~~~~~l~~~~~~~~~~l~~e~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  532 (732)
                                                               .+......++   ..++..+......++++.+.+.+.+|
T Consensus       264 -----------------------------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (491)
T 4gc0_A          264 -----------------------------------------RKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYY  299 (491)
T ss_dssp             -----------------------------------------HHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -----------------------------------------hhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhc
Confidence                                                     0000111111   13456677777888888899999999


Q ss_pred             HHHHHHHhcccchhcccCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHhhHHHHHHHHHHHHHHHHhhccc
Q 004742          533 TPQILEQAGVGVLLSNLGISSASASLLISGITTLLMLPSIAVAMRLMDISGRRTLLLSTIPILITSLVVLVLSSVIKMGS  612 (732)
Q Consensus       533 ~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~i~~~~~l~~~~i~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  612 (732)
                      .|.+.+..+...          ........+.++..+++.+++++++||+|||+.++.+..++.++++.+.......   
T Consensus       300 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~---  366 (491)
T 4gc0_A          300 APEVFKTLGAST----------DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ---  366 (491)
T ss_dssp             HHHHHHHSSCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             chHHHHhcCCCc----------cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc---
Confidence            999998866442          4455556677888999999999999999999999998888888877766543322   


Q ss_pred             chhhHHHHHHHHHHHHHHhhcccchhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh------hchhHHH
Q 004742          613 VVHASISTVSVVLYFCCFVMGFGPIPNILCSEIFPTRVRGICIAICALVFWIGDIIVTYSLPVLLNS------VGLAGVF  686 (732)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~gi~~~~~~ig~~i~~~~~~~l~~~------~g~~~~f  686 (732)
                       .+.+..++.++++..++..+++++++++++|++|++.|+++.|+++.+.++++++++.+++.+.+.      .+...+|
T Consensus       367 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~  445 (491)
T 4gc0_A          367 -APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY  445 (491)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred             -cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence             234455667777788888889999999999999999999999999999999999999999877543      4566789


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCChhhhhhhhhccCCcchhh
Q 004742          687 GMYAVVCVISWIFVFIKVPETKGMPLEVITEFFAVGASQADAA  729 (732)
Q Consensus       687 ~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~~~~~~~~~~~~  729 (732)
                      ++++++++++.+++++++|||||+++||+|+.|+++.++.++.
T Consensus       446 ~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~~  488 (491)
T 4gc0_A          446 WIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQT  488 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---------
T ss_pred             HHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccccC
Confidence            9999999999999999999999999999999998776655543
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 732
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 6e-10
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 1e-07
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 2e-05
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 5e-07
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 2e-05
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 3e-04
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 59.7 bits (143), Expect = 6e-10
 Identities = 27/190 (14%), Positives = 63/190 (33%), Gaps = 8/190 (4%)

Query: 6   LVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGA 65
            + +    G           A A+ Y+  E          G  ++   I         G+
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFS--RGDLGFALSGISIAYGFSKFIMGS 81

Query: 66  IADWLGRRPMLIVSSVLYFIGGLVMLWSP----NVYVLLLARLLDGFGIGLAVTLVPIYI 121
           ++D    R  L    +L     L M + P    ++ V+ +   L G+  G+        +
Sbjct: 82  VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTM 141

Query: 122 SETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLMTAPSWRLMLGVLFIPSLIYFVLT 181
                 + RG + ++      VG  +   ++F + +     W   L +    +++  +  
Sbjct: 142 VHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200

Query: 182 IFYLPESPRW 191
              + ++P+ 
Sbjct: 201 FAMMRDTPQS 210
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query732
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.94
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.38
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.34
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-34  Score=303.94  Aligned_cols=184  Identities=14%  Similarity=0.081  Sum_probs=163.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhCChHHHHHHHHH
Q 004742            3 GAALVAIAAAIGNLLQGWDNATIAGAVLYIKREFHLETEPTIEGLIVAMSLIGATCITTCSGAIADWLGRRPMLIVSSVL   82 (732)
Q Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~I~~~lgl~~s~s~~gll~Sl~~IG~~Ig~~~~g~LsDrfGrRkvLLigllL   82 (732)
                      .+|.+++.++++++..++++..++.+.|.+. ++|+  +.++.|++.+++.+++.++++++|+++||+|||+++.+++++
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~--s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGF--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTT--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            4688888999999999999999999899876 5899  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhHhHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004742           83 YFIGGLVMLWSP----NVYVLLLARLLDGFGIGLAVTLVPIYISETAPPEIRGLLNTLPQFTGCVGMFLAYCMVFGMSLM  158 (732)
Q Consensus        83 ~aIgslL~a~a~----s~~lLiI~R~l~G~g~G~~~~~~~alIaE~fP~k~RG~~~~~~~~~~~~G~~ig~l~~l~~~l~  158 (732)
                      .+++.+++++++    +++.+++.|++.|++.|..++...+++.|++|+++|++++++.+.+..+|.++++...... ..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~-~~  177 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-MA  177 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-HH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH-hh
Confidence            999999888764    6788999999999999999999999999999999999999999999999999995443322 22


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhhccCCch
Q 004742          159 TAPSWRLMLGVLFIPSLIYFVLTIFYLPESPR  190 (732)
Q Consensus       159 ~~~~Wr~~~~i~~~l~~i~~~l~~~~~~esp~  190 (732)
                      ...+||+.|++.++++++..++.+++++++|+
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  209 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence            34589999999999988888888888888764
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure