Query 004743
Match_columns 732
No_of_seqs 606 out of 3444
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 12:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.9E-51 1.3E-55 488.7 28.4 432 146-613 435-921 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.1E-51 1.5E-55 488.1 26.6 345 159-558 415-768 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1E-45 2.2E-50 447.8 24.3 412 149-607 153-589 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.4E-46 3.1E-51 445.3 15.6 390 145-602 155-558 (697)
5 PLN03081 pentatricopeptide (PP 100.0 1.8E-45 3.8E-50 436.0 21.7 390 149-600 88-522 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 4.5E-44 9.7E-49 433.5 23.9 345 146-556 251-601 (857)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.8 1.7E-21 3.6E-26 186.0 3.0 119 607-731 5-133 (155)
8 PRK11788 tetratricopeptide rep 99.7 7.7E-15 1.7E-19 162.1 25.6 276 162-502 47-326 (389)
9 PRK11788 tetratricopeptide rep 99.6 2.1E-13 4.4E-18 150.7 23.2 269 159-493 78-354 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.4 4.7E-11 1E-15 145.0 30.0 283 192-511 602-891 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 7.5E-11 1.6E-15 143.2 31.6 310 160-511 407-723 (899)
12 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 3E-17 99.6 6.3 49 385-433 1-49 (50)
13 PF13041 PPR_2: PPR repeat fam 99.3 2.6E-12 5.7E-17 98.1 6.6 50 420-469 1-50 (50)
14 KOG4422 Uncharacterized conser 99.3 3.1E-10 6.6E-15 119.0 20.9 290 193-506 118-447 (625)
15 KOG4422 Uncharacterized conser 99.2 2.8E-09 6.1E-14 111.9 22.6 111 192-332 208-323 (625)
16 KOG4318 Bicoid mRNA stability 99.0 1.2E-09 2.7E-14 123.3 12.5 257 171-472 11-286 (1088)
17 PRK15174 Vi polysaccharide exp 99.0 4.7E-07 1E-11 106.8 30.7 290 159-486 51-347 (656)
18 PRK15174 Vi polysaccharide exp 98.8 3.3E-06 7.2E-11 99.7 29.1 281 162-486 88-381 (656)
19 PF12854 PPR_1: PPR repeat 98.7 1E-08 2.3E-13 71.1 4.1 32 382-413 2-33 (34)
20 PF12854 PPR_1: PPR repeat 98.7 1.6E-08 3.5E-13 70.1 3.6 34 345-379 1-34 (34)
21 TIGR00990 3a0801s09 mitochondr 98.7 8.3E-06 1.8E-10 96.0 27.6 256 164-486 308-571 (615)
22 KOG4318 Bicoid mRNA stability 98.6 1.2E-06 2.6E-11 99.8 18.4 244 212-506 11-286 (1088)
23 PF13429 TPR_15: Tetratricopep 98.6 2.2E-07 4.7E-12 98.1 11.5 255 162-484 20-275 (280)
24 PRK10747 putative protoheme IX 98.5 1.7E-05 3.6E-10 88.2 23.1 276 163-483 97-387 (398)
25 TIGR02521 type_IV_pilW type IV 98.5 2.1E-05 4.5E-10 78.9 22.0 199 191-485 31-231 (234)
26 TIGR02521 type_IV_pilW type IV 98.5 1.7E-05 3.7E-10 79.5 20.7 180 294-510 41-222 (234)
27 PF13429 TPR_15: Tetratricopep 98.4 1.4E-06 3.1E-11 91.9 12.2 251 196-510 13-267 (280)
28 PRK11447 cellulose synthase su 98.4 4.3E-05 9.4E-10 96.3 27.3 294 160-486 361-700 (1157)
29 PRK10049 pgaA outer membrane p 98.4 8.3E-05 1.8E-09 89.6 28.2 286 162-486 61-388 (765)
30 TIGR00990 3a0801s09 mitochondr 98.4 0.00018 3.8E-09 84.8 30.0 264 160-486 137-462 (615)
31 TIGR00540 hemY_coli hemY prote 98.4 4.5E-05 9.8E-10 85.1 23.9 281 162-483 96-396 (409)
32 PRK11447 cellulose synthase su 98.3 0.00025 5.5E-09 89.5 30.4 123 160-313 279-414 (1157)
33 PRK10049 pgaA outer membrane p 98.3 0.00046 9.9E-09 83.3 29.2 290 160-486 93-422 (765)
34 COG2956 Predicted N-acetylgluc 98.3 9E-05 2E-09 76.4 19.3 229 204-493 48-285 (389)
35 PRK09782 bacteriophage N4 rece 98.1 0.00063 1.4E-08 83.2 26.7 230 190-486 476-706 (987)
36 TIGR00756 PPR pentatricopeptid 98.1 3E-06 6.5E-11 58.6 4.1 35 192-226 1-35 (35)
37 KOG4626 O-linked N-acetylgluco 98.1 0.00024 5.1E-09 78.7 19.6 279 160-484 126-415 (966)
38 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 57.0 4.7 33 424-456 2-34 (35)
39 PRK14574 hmsH outer membrane p 98.1 0.0012 2.5E-08 79.3 26.3 128 359-486 299-445 (822)
40 PF13812 PPR_3: Pentatricopept 98.1 5.6E-06 1.2E-10 57.1 4.1 33 192-224 2-34 (34)
41 PRK14574 hmsH outer membrane p 98.0 0.0014 3.1E-08 78.5 26.2 283 161-486 45-396 (822)
42 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 56.0 4.1 32 389-420 3-34 (34)
43 PRK09782 bacteriophage N4 rece 97.9 0.0021 4.7E-08 78.6 25.4 220 164-457 490-710 (987)
44 PRK12370 invasion protein regu 97.9 0.0017 3.6E-08 75.5 23.0 249 165-486 276-535 (553)
45 KOG1126 DNA-binding cell divis 97.9 0.0023 5E-08 72.0 22.6 284 166-501 335-632 (638)
46 PRK10747 putative protoheme IX 97.9 0.0016 3.4E-08 72.5 21.4 218 160-449 163-388 (398)
47 PRK12370 invasion protein regu 97.8 0.0034 7.4E-08 72.9 24.6 240 189-485 254-501 (553)
48 COG2956 Predicted N-acetylgluc 97.8 0.0035 7.6E-08 65.0 20.9 243 142-451 34-278 (389)
49 PF01535 PPR: PPR repeat; Int 97.8 2.5E-05 5.4E-10 52.5 3.2 31 192-222 1-31 (31)
50 KOG1840 Kinesin light chain [C 97.7 0.0074 1.6E-07 68.1 23.9 242 159-484 208-477 (508)
51 PF01535 PPR: PPR repeat; Int 97.7 4.1E-05 8.9E-10 51.4 3.6 29 424-452 2-30 (31)
52 PF12569 NARP1: NMDA receptor- 97.6 0.03 6.6E-07 63.8 27.6 293 159-485 13-333 (517)
53 PF08579 RPM2: Mitochondrial r 97.6 0.00059 1.3E-08 60.2 9.9 78 392-469 30-116 (120)
54 COG3071 HemY Uncharacterized e 97.6 0.022 4.8E-07 60.8 23.2 282 163-486 97-390 (400)
55 TIGR00540 hemY_coli hemY prote 97.5 0.011 2.3E-07 66.1 21.5 229 162-449 165-397 (409)
56 PF10037 MRP-S27: Mitochondria 97.5 0.0009 2E-08 73.7 11.9 113 358-470 72-186 (429)
57 KOG4626 O-linked N-acetylgluco 97.3 0.018 3.9E-07 64.4 19.6 257 191-485 116-382 (966)
58 PF08579 RPM2: Mitochondrial r 97.3 0.0021 4.6E-08 56.7 10.0 78 358-435 31-117 (120)
59 PF12569 NARP1: NMDA receptor- 97.3 0.035 7.5E-07 63.3 22.6 267 200-503 13-308 (517)
60 COG3071 HemY Uncharacterized e 97.2 0.1 2.3E-06 55.8 22.7 247 195-502 86-371 (400)
61 PF10037 MRP-S27: Mitochondria 97.2 0.0055 1.2E-07 67.6 13.8 131 374-504 50-186 (429)
62 PF06239 ECSIT: Evolutionarily 97.1 0.0042 9.2E-08 61.4 11.0 101 384-484 44-166 (228)
63 KOG1155 Anaphase-promoting com 97.1 0.35 7.5E-06 52.9 25.4 236 202-504 273-519 (559)
64 KOG2003 TPR repeat-containing 97.0 0.048 1E-06 58.7 18.5 125 358-486 564-689 (840)
65 KOG2003 TPR repeat-containing 97.0 0.022 4.7E-07 61.3 15.2 285 160-483 429-719 (840)
66 KOG1129 TPR repeat-containing 96.9 0.16 3.4E-06 53.0 20.7 243 179-486 211-458 (478)
67 KOG2076 RNA polymerase III tra 96.9 0.16 3.4E-06 59.6 22.6 266 198-485 248-554 (895)
68 PRK11189 lipoprotein NlpI; Pro 96.9 0.12 2.7E-06 54.9 20.5 218 204-486 39-265 (296)
69 COG3063 PilF Tfp pilus assembl 96.8 0.23 5E-06 49.7 20.2 207 193-461 37-244 (250)
70 PF04733 Coatomer_E: Coatomer 96.8 0.012 2.5E-07 62.4 12.2 124 358-486 137-265 (290)
71 KOG1840 Kinesin light chain [C 96.8 0.088 1.9E-06 59.6 19.7 211 192-483 200-435 (508)
72 COG4783 Putative Zn-dependent 96.8 0.33 7.2E-06 53.5 23.2 143 296-493 318-461 (484)
73 cd05804 StaR_like StaR_like; a 96.8 0.27 5.8E-06 53.4 23.3 230 199-486 51-293 (355)
74 PF06239 ECSIT: Evolutionarily 96.8 0.01 2.2E-07 58.8 10.3 88 350-438 46-154 (228)
75 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.091 2E-06 57.8 17.7 121 358-485 175-296 (395)
76 KOG3777 Uncharacterized conser 96.6 0.0011 2.3E-08 72.4 2.4 103 604-713 12-124 (443)
77 KOG1070 rRNA processing protei 96.5 0.14 3E-06 62.4 18.7 75 398-473 1611-1687(1710)
78 TIGR03302 OM_YfiO outer membra 96.5 0.18 3.8E-06 51.4 17.8 160 294-486 43-232 (235)
79 PRK11189 lipoprotein NlpI; Pro 96.3 0.6 1.3E-05 49.6 21.4 206 192-463 65-276 (296)
80 PF05843 Suf: Suppressor of fo 96.3 0.079 1.7E-06 55.9 14.2 129 353-486 3-136 (280)
81 KOG1915 Cell cycle control pro 96.3 1.2 2.5E-05 49.0 22.6 286 162-493 153-471 (677)
82 cd00189 TPR Tetratricopeptide 96.3 0.071 1.5E-06 43.9 11.4 87 360-448 8-94 (100)
83 TIGR02552 LcrH_SycD type III s 96.3 0.18 3.9E-06 46.3 15.0 97 388-486 18-114 (135)
84 PRK10370 formate-dependent nit 96.2 0.26 5.6E-06 49.2 16.9 128 365-498 52-184 (198)
85 PRK15359 type III secretion sy 96.2 0.11 2.5E-06 48.8 13.5 92 393-486 30-121 (144)
86 TIGR02552 LcrH_SycD type III s 96.2 0.15 3.2E-06 46.9 14.1 102 358-463 23-124 (135)
87 PF04733 Coatomer_E: Coatomer 96.2 0.092 2E-06 55.6 14.1 135 360-506 110-250 (290)
88 KOG3785 Uncharacterized conser 96.2 0.04 8.6E-07 57.8 10.7 194 294-497 295-499 (557)
89 KOG1126 DNA-binding cell divis 96.2 0.18 3.9E-06 57.3 16.5 244 164-452 367-621 (638)
90 KOG2002 TPR-containing nuclear 96.1 0.65 1.4E-05 55.0 21.3 276 192-504 453-763 (1018)
91 PRK15359 type III secretion sy 96.1 0.21 4.6E-06 47.0 14.5 121 338-463 11-131 (144)
92 cd05804 StaR_like StaR_like; a 96.1 0.98 2.1E-05 48.9 22.0 92 392-484 119-213 (355)
93 cd00189 TPR Tetratricopeptide 96.0 0.096 2.1E-06 43.1 11.0 96 389-486 2-97 (100)
94 PF09976 TPR_21: Tetratricopep 96.0 0.2 4.4E-06 47.1 14.0 121 358-482 18-143 (145)
95 KOG1070 rRNA processing protei 95.9 0.92 2E-05 55.8 21.6 203 248-504 1470-1680(1710)
96 PF09295 ChAPs: ChAPs (Chs5p-A 95.9 0.087 1.9E-06 58.0 12.5 116 294-449 179-295 (395)
97 KOG3785 Uncharacterized conser 95.9 0.33 7E-06 51.2 15.7 225 165-460 269-497 (557)
98 KOG2076 RNA polymerase III tra 95.8 1.5 3.3E-05 51.7 22.5 285 163-484 152-510 (895)
99 COG3063 PilF Tfp pilus assembl 95.8 0.61 1.3E-05 46.7 16.5 126 358-486 41-168 (250)
100 KOG2047 mRNA splicing factor [ 95.7 1.5 3.2E-05 50.0 20.8 297 162-484 359-685 (835)
101 KOG3081 Vesicle coat complex C 95.6 0.5 1.1E-05 48.3 15.4 122 360-486 145-271 (299)
102 KOG1129 TPR repeat-containing 95.6 0.79 1.7E-05 48.1 17.0 221 162-451 235-458 (478)
103 TIGR03302 OM_YfiO outer membra 95.5 1.6 3.5E-05 44.3 19.8 84 366-451 129-232 (235)
104 PF12921 ATP13: Mitochondrial 95.5 0.14 2.9E-06 47.1 10.3 99 386-504 1-100 (126)
105 PRK14720 transcript cleavage f 95.5 2.1 4.6E-05 51.8 22.7 219 187-486 27-252 (906)
106 TIGR02795 tol_pal_ybgF tol-pal 95.4 0.35 7.6E-06 42.8 12.8 95 390-486 5-105 (119)
107 KOG1128 Uncharacterized conser 95.4 0.45 9.8E-06 54.7 15.8 208 159-451 407-616 (777)
108 KOG0547 Translocase of outer m 95.3 2.7 5.8E-05 46.5 20.8 124 360-486 436-566 (606)
109 KOG4340 Uncharacterized conser 95.3 0.64 1.4E-05 48.1 15.1 172 248-448 156-336 (459)
110 KOG1155 Anaphase-promoting com 95.2 3.5 7.6E-05 45.4 21.2 126 358-486 336-461 (559)
111 TIGR02795 tol_pal_ybgF tol-pal 95.2 0.63 1.4E-05 41.2 13.6 93 358-452 8-106 (119)
112 KOG3616 Selective LIM binding 95.1 0.23 5E-06 56.6 12.2 111 358-484 797-909 (1636)
113 KOG0985 Vesicle coat protein c 94.9 0.95 2.1E-05 53.8 16.8 196 205-482 1089-1304(1666)
114 PF12921 ATP13: Mitochondrial 94.8 0.25 5.5E-06 45.3 10.0 54 417-470 47-101 (126)
115 COG5010 TadD Flp pilus assembl 94.8 1 2.3E-05 45.9 15.0 123 358-483 106-228 (257)
116 KOG3081 Vesicle coat complex C 94.7 0.59 1.3E-05 47.8 13.0 140 360-510 116-260 (299)
117 PRK10153 DNA-binding transcrip 94.6 2.7 5.9E-05 48.3 20.0 149 345-500 331-494 (517)
118 KOG3941 Intermediate in Toll s 94.6 0.37 8E-06 49.5 11.1 85 401-485 86-187 (406)
119 KOG1156 N-terminal acetyltrans 94.5 8.6 0.00019 44.1 22.6 292 157-486 192-511 (700)
120 PRK04841 transcriptional regul 94.2 3.9 8.5E-05 50.5 21.8 271 162-486 464-760 (903)
121 PRK10370 formate-dependent nit 94.2 1.3 2.9E-05 44.0 14.3 109 353-466 75-186 (198)
122 PRK04841 transcriptional regul 94.0 10 0.00022 46.9 24.9 276 162-486 421-720 (903)
123 PF12895 Apc3: Anaphase-promot 94.0 0.11 2.4E-06 43.7 5.4 79 366-447 3-83 (84)
124 KOG2002 TPR-containing nuclear 93.9 9.1 0.0002 45.9 21.9 125 358-486 276-409 (1018)
125 PLN03088 SGT1, suppressor of 93.8 1 2.2E-05 49.2 14.0 101 360-464 10-110 (356)
126 PRK02603 photosystem I assembl 93.8 2.1 4.6E-05 41.3 14.8 108 388-501 36-160 (172)
127 KOG0495 HAT repeat protein [RN 93.7 16 0.00035 42.1 27.3 188 358-560 624-818 (913)
128 PF12895 Apc3: Anaphase-promot 93.7 0.14 3.1E-06 43.0 5.6 80 400-482 2-83 (84)
129 PRK15179 Vi polysaccharide bio 93.7 2.4 5.2E-05 50.4 17.5 132 294-463 96-228 (694)
130 KOG1173 Anaphase-promoting com 93.7 15 0.00034 41.5 22.2 123 361-486 389-518 (611)
131 PRK02603 photosystem I assembl 93.6 2 4.4E-05 41.5 14.3 78 358-437 41-121 (172)
132 PRK15179 Vi polysaccharide bio 93.5 2.6 5.7E-05 50.1 17.3 124 358-486 92-217 (694)
133 PF14938 SNAP: Soluble NSF att 93.2 4 8.8E-05 43.0 16.8 120 362-483 124-263 (282)
134 KOG1128 Uncharacterized conser 93.2 2.4 5.2E-05 49.1 15.4 214 195-486 402-616 (777)
135 KOG1915 Cell cycle control pro 93.1 2.3 4.9E-05 46.9 14.5 126 359-492 148-277 (677)
136 PLN03088 SGT1, suppressor of 93.0 1.9 4E-05 47.2 14.3 99 395-497 10-108 (356)
137 PF03704 BTAD: Bacterial trans 93.0 0.59 1.3E-05 43.7 9.1 58 390-448 65-122 (146)
138 COG4783 Putative Zn-dependent 92.9 3 6.5E-05 46.2 15.2 120 362-485 316-436 (484)
139 PF14559 TPR_19: Tetratricopep 92.8 0.42 9E-06 38.1 6.8 52 434-486 3-54 (68)
140 PF05843 Suf: Suppressor of fo 92.8 0.38 8.2E-06 50.7 8.2 143 280-465 3-148 (280)
141 PF09976 TPR_21: Tetratricopep 92.7 3.2 7E-05 38.8 13.7 95 388-485 13-113 (145)
142 KOG1914 mRNA cleavage and poly 92.7 3.3 7.1E-05 46.4 15.2 125 358-486 372-501 (656)
143 KOG3616 Selective LIM binding 92.7 2.5 5.5E-05 48.6 14.5 223 196-482 737-962 (1636)
144 KOG2047 mRNA splicing factor [ 92.7 23 0.0005 40.8 23.7 45 192-238 249-293 (835)
145 CHL00033 ycf3 photosystem I as 92.7 2.1 4.4E-05 41.2 12.6 58 358-415 41-100 (168)
146 PF03704 BTAD: Bacterial trans 92.6 0.45 9.7E-06 44.6 7.7 66 358-424 68-138 (146)
147 KOG3941 Intermediate in Toll s 92.5 0.67 1.5E-05 47.6 8.9 84 366-449 86-186 (406)
148 KOG4340 Uncharacterized conser 92.5 5.6 0.00012 41.4 15.5 270 161-507 21-326 (459)
149 KOG2376 Signal recognition par 92.4 8.7 0.00019 43.7 18.0 218 294-602 22-254 (652)
150 PF04840 Vps16_C: Vps16, C-ter 91.6 1.8 3.9E-05 46.5 11.6 110 353-483 179-288 (319)
151 COG5107 RNA14 Pre-mRNA 3'-end 91.5 4.2 9.1E-05 44.6 14.0 138 353-497 399-540 (660)
152 smart00299 CLH Clathrin heavy 91.5 10 0.00023 35.0 15.6 121 358-501 13-134 (140)
153 KOG3617 WD40 and TPR repeat-co 91.4 3 6.5E-05 48.8 13.4 44 163-218 741-784 (1416)
154 CHL00033 ycf3 photosystem I as 91.3 3.4 7.4E-05 39.6 12.4 96 386-482 34-138 (168)
155 PF12688 TPR_5: Tetratrico pep 91.2 6 0.00013 36.0 12.9 102 360-469 9-118 (120)
156 KOG1914 mRNA cleavage and poly 90.6 8.9 0.00019 43.1 15.7 133 277-450 365-500 (656)
157 COG5010 TadD Flp pilus assembl 90.5 2.3 5E-05 43.4 10.4 98 192-314 101-198 (257)
158 KOG1538 Uncharacterized conser 90.4 6.4 0.00014 45.0 14.5 86 390-486 750-846 (1081)
159 PLN02789 farnesyltranstransfer 90.3 29 0.00063 37.3 24.1 223 198-483 44-299 (320)
160 PRK10803 tol-pal system protei 90.2 7.4 0.00016 40.6 14.3 100 388-493 144-251 (263)
161 PRK10866 outer membrane biogen 90.1 14 0.00031 37.9 16.3 158 294-484 42-239 (243)
162 PF13170 DUF4003: Protein of u 89.8 8.5 0.00019 40.9 14.7 154 299-486 77-250 (297)
163 KOG2053 Mitochondrial inherita 89.8 16 0.00034 43.7 17.6 106 120-237 16-121 (932)
164 PF04840 Vps16_C: Vps16, C-ter 89.6 18 0.00038 38.9 17.0 87 387-483 177-263 (319)
165 KOG2053 Mitochondrial inherita 89.4 7.4 0.00016 46.2 14.6 134 363-504 20-157 (932)
166 PF13432 TPR_16: Tetratricopep 89.0 1.5 3.2E-05 34.6 6.4 53 431-485 6-59 (65)
167 KOG1156 N-terminal acetyltrans 89.0 44 0.00095 38.7 19.8 269 192-488 144-470 (700)
168 COG3898 Uncharacterized membra 88.7 26 0.00055 38.1 16.8 248 203-486 132-392 (531)
169 KOG0495 HAT repeat protein [RN 88.6 54 0.0012 38.1 27.5 125 358-486 556-680 (913)
170 PF13371 TPR_9: Tetratricopept 88.2 3.2 7E-05 33.3 8.1 61 430-493 3-63 (73)
171 PF13432 TPR_16: Tetratricopep 88.1 1.8 3.9E-05 34.1 6.3 54 361-415 6-59 (65)
172 KOG2796 Uncharacterized conser 87.7 13 0.00029 38.2 13.3 134 358-496 183-323 (366)
173 KOG0985 Vesicle coat protein c 87.6 44 0.00095 40.7 19.0 109 358-481 1110-1218(1666)
174 PF13170 DUF4003: Protein of u 87.4 11 0.00024 40.0 13.6 70 207-287 78-150 (297)
175 PRK14720 transcript cleavage f 87.4 7.1 0.00015 47.4 13.3 145 281-451 34-178 (906)
176 KOG1174 Anaphase-promoting com 86.8 54 0.0012 36.0 18.5 253 200-486 205-467 (564)
177 PRK15363 pathogenicity island 86.4 9.9 0.00022 36.2 11.1 87 397-486 45-132 (157)
178 PF14626 RNase_Zc3h12a_2: Zc3h 86.2 2.6 5.6E-05 37.6 6.5 72 640-711 22-98 (122)
179 PF13424 TPR_12: Tetratricopep 85.9 2.4 5.2E-05 34.7 6.2 59 389-447 7-71 (78)
180 KOG2376 Signal recognition par 85.7 74 0.0016 36.6 20.2 136 367-506 356-507 (652)
181 PF12688 TPR_5: Tetratrico pep 85.0 18 0.00038 32.9 11.8 89 394-484 8-102 (120)
182 PRK10803 tol-pal system protei 84.8 12 0.00027 39.0 12.1 94 353-451 145-246 (263)
183 PRK15363 pathogenicity island 84.2 25 0.00054 33.5 12.7 91 359-451 42-132 (157)
184 KOG1173 Anaphase-promoting com 83.9 66 0.0014 36.7 17.6 220 190-469 311-534 (611)
185 PF13414 TPR_11: TPR repeat; P 82.3 6.8 0.00015 31.0 7.3 26 389-414 5-30 (69)
186 KOG3060 Uncharacterized conser 81.8 67 0.0015 33.1 18.7 130 358-493 58-188 (289)
187 PLN02789 farnesyltranstransfer 81.5 66 0.0014 34.6 16.5 131 358-493 43-176 (320)
188 PF10300 DUF3808: Protein of u 81.4 22 0.00048 40.4 13.5 118 365-485 246-375 (468)
189 PF05991 NYN_YacP: YacP-like N 81.1 3.7 8E-05 39.7 6.1 49 676-724 70-128 (166)
190 PF14938 SNAP: Soluble NSF att 81.1 31 0.00067 36.2 13.7 112 358-486 100-225 (282)
191 PLN03098 LPA1 LOW PSII ACCUMUL 80.6 33 0.00071 38.3 13.7 63 351-416 75-141 (453)
192 PLN03098 LPA1 LOW PSII ACCUMUL 80.5 24 0.00052 39.3 12.7 66 384-451 72-141 (453)
193 PF13424 TPR_12: Tetratricopep 80.3 4.4 9.6E-05 33.1 5.6 62 423-484 6-73 (78)
194 PF13371 TPR_9: Tetratricopept 80.2 6.7 0.00014 31.4 6.6 52 362-414 5-56 (73)
195 PRK10153 DNA-binding transcrip 79.6 98 0.0021 35.7 18.0 89 369-461 401-490 (517)
196 PF13414 TPR_11: TPR repeat; P 79.4 9.2 0.0002 30.2 7.1 63 422-485 3-66 (69)
197 KOG4570 Uncharacterized conser 78.9 8.4 0.00018 40.5 8.0 99 277-416 63-164 (418)
198 PF13929 mRNA_stabil: mRNA sta 77.8 36 0.00077 35.7 12.3 140 365-504 141-290 (292)
199 COG3629 DnrI DNA-binding trans 77.1 21 0.00046 37.4 10.5 61 424-485 155-215 (280)
200 KOG0547 Translocase of outer m 76.9 50 0.0011 37.0 13.5 155 326-486 336-491 (606)
201 KOG3617 WD40 and TPR repeat-co 75.1 81 0.0018 37.7 15.1 183 202-448 811-993 (1416)
202 KOG4570 Uncharacterized conser 74.7 22 0.00048 37.5 9.7 104 381-486 58-164 (418)
203 smart00299 CLH Clathrin heavy 74.2 27 0.00058 32.1 9.7 88 390-485 10-97 (140)
204 PF09613 HrpB1_HrpK: Bacterial 73.6 71 0.0015 30.6 12.1 18 433-450 55-72 (160)
205 PF09205 DUF1955: Domain of un 72.8 81 0.0018 29.3 13.4 118 365-486 15-149 (161)
206 KOG4162 Predicted calmodulin-b 72.2 1.3E+02 0.0027 35.8 15.8 208 218-484 315-540 (799)
207 PF07035 Mic1: Colon cancer-as 71.8 80 0.0017 30.5 12.3 102 372-483 14-115 (167)
208 COG3629 DnrI DNA-binding trans 71.4 30 0.00065 36.3 10.0 79 388-467 154-237 (280)
209 COG5107 RNA14 Pre-mRNA 3'-end 71.3 58 0.0013 36.2 12.2 143 281-468 400-546 (660)
210 PF13525 YfiO: Outer membrane 71.1 75 0.0016 31.5 12.7 73 160-237 15-88 (203)
211 PF13762 MNE1: Mitochondrial s 70.2 95 0.0021 29.2 12.0 103 374-476 24-134 (145)
212 PRK10866 outer membrane biogen 69.8 1.4E+02 0.003 30.7 17.8 73 160-237 42-115 (243)
213 PF13512 TPR_18: Tetratricopep 69.3 43 0.00094 31.3 9.5 71 364-434 22-94 (142)
214 KOG0553 TPR repeat-containing 68.9 57 0.0012 34.3 11.2 95 397-497 91-187 (304)
215 PF10602 RPN7: 26S proteasome 67.8 51 0.0011 32.1 10.3 97 388-486 37-142 (177)
216 PF00637 Clathrin: Region in C 66.9 1.6 3.5E-05 40.6 -0.4 84 358-448 13-96 (143)
217 TIGR02561 HrpB1_HrpK type III 66.7 1E+02 0.0022 29.2 11.3 78 363-445 21-99 (153)
218 PF09613 HrpB1_HrpK: Bacterial 66.6 1.2E+02 0.0027 29.0 12.5 93 358-455 16-110 (160)
219 KOG2280 Vacuolar assembly/sort 66.5 34 0.00074 40.2 9.8 85 389-483 686-770 (829)
220 PF00637 Clathrin: Region in C 66.4 2.3 5.1E-05 39.5 0.6 86 393-485 13-98 (143)
221 KOG0553 TPR repeat-containing 65.6 76 0.0016 33.4 11.3 101 361-466 90-191 (304)
222 PF04184 ST7: ST7 protein; In 65.0 1.1E+02 0.0024 34.5 13.1 80 358-437 265-346 (539)
223 PF13512 TPR_18: Tetratricopep 64.6 77 0.0017 29.7 10.2 98 387-486 11-128 (142)
224 PF07035 Mic1: Colon cancer-as 63.5 1.5E+02 0.0032 28.7 13.8 125 344-485 22-148 (167)
225 KOG0276 Vesicle coat complex C 62.2 30 0.00065 39.6 8.1 102 361-483 646-747 (794)
226 COG0735 Fur Fe2+/Zn2+ uptake r 62.1 48 0.001 31.2 8.6 62 443-505 7-69 (145)
227 COG4235 Cytochrome c biogenesi 61.1 1.9E+02 0.0041 30.5 13.4 108 384-495 153-263 (287)
228 COG4700 Uncharacterized protei 60.8 1.8E+02 0.0039 28.8 14.5 121 358-482 95-218 (251)
229 KOG1538 Uncharacterized conser 60.3 77 0.0017 36.7 10.9 79 363-452 758-847 (1081)
230 TIGR02561 HrpB1_HrpK type III 59.9 1.6E+02 0.0034 27.9 13.2 107 388-501 8-119 (153)
231 PRK15331 chaperone protein Sic 59.3 97 0.0021 29.8 10.0 85 364-450 49-133 (165)
232 KOG1920 IkappaB kinase complex 59.1 4.6E+02 0.01 33.0 18.0 28 192-219 791-820 (1265)
233 COG1729 Uncharacterized protei 59.1 1.5E+02 0.0033 30.7 12.2 100 389-493 144-249 (262)
234 PF13929 mRNA_stabil: mRNA sta 58.5 94 0.002 32.7 10.6 101 367-467 181-288 (292)
235 COG3898 Uncharacterized membra 58.0 2.9E+02 0.0064 30.4 16.2 130 363-497 165-301 (531)
236 PF07079 DUF1347: Protein of u 57.6 3.2E+02 0.0069 30.7 15.5 174 294-507 16-210 (549)
237 PF13176 TPR_7: Tetratricopept 57.6 23 0.0005 24.3 4.2 23 390-412 2-24 (36)
238 KOG2041 WD40 repeat protein [G 57.5 2.3E+02 0.005 33.4 14.0 119 354-486 812-952 (1189)
239 PF04053 Coatomer_WDAD: Coatom 57.4 53 0.0012 37.0 9.4 111 358-483 301-428 (443)
240 PF13176 TPR_7: Tetratricopept 56.8 22 0.00047 24.4 4.0 26 193-218 1-26 (36)
241 KOG1125 TPR repeat-containing 55.8 3.7E+02 0.0081 31.0 22.0 109 362-474 440-559 (579)
242 PF02284 COX5A: Cytochrome c o 55.5 1.3E+02 0.0028 26.6 9.1 60 370-430 28-87 (108)
243 COG3118 Thioredoxin domain-con 55.4 2.8E+02 0.006 29.4 13.7 140 360-503 142-283 (304)
244 PF10602 RPN7: 26S proteasome 55.4 1.1E+02 0.0023 29.9 10.0 90 358-449 42-140 (177)
245 KOG2796 Uncharacterized conser 54.8 1.7E+02 0.0038 30.4 11.4 65 366-433 266-330 (366)
246 PF13281 DUF4071: Domain of un 54.1 3.4E+02 0.0073 29.9 16.9 32 187-220 139-170 (374)
247 PF11663 Toxin_YhaV: Toxin wit 53.6 17 0.00036 33.6 3.7 35 160-202 105-139 (140)
248 COG3118 Thioredoxin domain-con 53.6 3E+02 0.0065 29.2 14.1 113 358-473 174-288 (304)
249 KOG1125 TPR repeat-containing 53.3 4.1E+02 0.0089 30.7 16.4 110 368-482 410-523 (579)
250 PF13762 MNE1: Mitochondrial s 52.8 1.2E+02 0.0026 28.5 9.4 80 358-437 45-130 (145)
251 PF11848 DUF3368: Domain of un 52.6 42 0.00091 25.0 5.2 38 198-235 9-46 (48)
252 cd00923 Cyt_c_Oxidase_Va Cytoc 52.3 77 0.0017 27.6 7.2 45 370-414 25-69 (103)
253 PF13374 TPR_10: Tetratricopep 51.9 34 0.00074 23.5 4.6 27 388-414 3-29 (42)
254 KOG3165 Predicted nucleic-acid 51.0 20 0.00044 33.8 3.9 30 676-705 129-159 (195)
255 cd00923 Cyt_c_Oxidase_Va Cytoc 51.0 90 0.002 27.2 7.4 45 405-449 25-69 (103)
256 PF13281 DUF4071: Domain of un 50.4 3.8E+02 0.0083 29.5 15.6 161 294-486 151-334 (374)
257 PF07079 DUF1347: Protein of u 50.1 1.8E+02 0.0038 32.7 11.3 46 354-399 130-179 (549)
258 COG4235 Cytochrome c biogenesi 49.7 2.8E+02 0.006 29.3 12.4 111 350-465 155-268 (287)
259 PHA02875 ankyrin repeat protei 49.7 1.5E+02 0.0032 32.8 11.5 98 373-479 116-221 (413)
260 PF09205 DUF1955: Domain of un 49.4 1E+02 0.0022 28.6 8.0 60 358-418 92-151 (161)
261 COG1729 Uncharacterized protei 48.7 2.6E+02 0.0056 29.1 11.9 95 353-451 144-244 (262)
262 PF04053 Coatomer_WDAD: Coatom 48.4 1.6E+02 0.0034 33.3 11.3 157 200-447 270-427 (443)
263 PF02284 COX5A: Cytochrome c o 47.3 1.5E+02 0.0032 26.2 8.3 44 443-486 31-74 (108)
264 PF11207 DUF2989: Protein of u 47.1 1.4E+02 0.003 29.8 9.2 73 369-442 123-198 (203)
265 KOG0543 FKBP-type peptidyl-pro 46.9 2.4E+02 0.0051 31.1 11.7 80 422-504 257-337 (397)
266 PRK10564 maltose regulon perip 46.7 49 0.0011 34.9 6.4 48 184-231 249-297 (303)
267 KOG1127 TPR repeat-containing 46.6 6.6E+02 0.014 31.2 16.0 191 197-449 465-657 (1238)
268 KOG1127 TPR repeat-containing 46.6 2.7E+02 0.0059 34.3 12.9 124 358-484 498-623 (1238)
269 PF10366 Vps39_1: Vacuolar sor 46.5 1.1E+02 0.0023 27.2 7.7 26 460-485 42-67 (108)
270 PF13374 TPR_10: Tetratricopep 46.3 47 0.001 22.8 4.5 28 192-219 3-30 (42)
271 PF13525 YfiO: Outer membrane 46.2 3E+02 0.0066 27.1 12.7 56 361-416 14-71 (203)
272 PF13428 TPR_14: Tetratricopep 45.9 41 0.00089 24.1 4.2 28 389-416 3-30 (44)
273 PHA03100 ankyrin repeat protei 45.7 2.7E+02 0.0058 31.4 13.0 216 195-458 36-279 (480)
274 PF08631 SPO22: Meiosis protei 44.4 3.9E+02 0.0085 27.9 17.0 166 295-493 4-193 (278)
275 PRK15331 chaperone protein Sic 43.7 1.7E+02 0.0036 28.2 8.9 87 397-486 47-134 (165)
276 PF11838 ERAP1_C: ERAP1-like C 43.7 4.1E+02 0.009 27.9 13.9 92 358-452 135-231 (324)
277 KOG3060 Uncharacterized conser 42.8 4.1E+02 0.0089 27.6 21.3 118 365-486 99-220 (289)
278 PF11663 Toxin_YhaV: Toxin wit 42.5 22 0.00047 32.9 2.6 32 364-397 107-138 (140)
279 COG1747 Uncharacterized N-term 42.4 4.8E+02 0.01 29.8 13.2 144 327-486 52-234 (711)
280 KOG2297 Predicted translation 42.3 4.5E+02 0.0098 28.0 13.8 54 81-135 31-84 (412)
281 PF13428 TPR_14: Tetratricopep 42.2 51 0.0011 23.6 4.2 28 459-486 3-30 (44)
282 PF10083 DUF2321: Uncharacteri 41.6 32 0.00068 32.4 3.6 56 548-603 64-135 (158)
283 PF12796 Ank_2: Ankyrin repeat 41.2 79 0.0017 26.1 5.9 55 393-456 29-86 (89)
284 COG4455 ImpE Protein of avirul 40.5 1.7E+02 0.0038 29.6 8.7 76 390-466 4-81 (273)
285 PHA02875 ankyrin repeat protei 39.9 5.4E+02 0.012 28.2 17.2 203 171-458 16-231 (413)
286 PF06844 DUF1244: Protein of u 39.2 7.9 0.00017 30.7 -0.5 36 689-728 20-55 (68)
287 PF11848 DUF3368: Domain of un 38.6 98 0.0021 23.0 5.3 27 469-495 14-40 (48)
288 COG2178 Predicted RNA-binding 37.7 2.6E+02 0.0057 27.6 9.3 107 369-485 20-149 (204)
289 COG1569 Predicted nucleic acid 37.0 59 0.0013 30.2 4.6 41 665-705 65-113 (142)
290 PF04184 ST7: ST7 protein; In 36.6 3.7E+02 0.0079 30.7 11.4 55 431-485 268-323 (539)
291 KOG1174 Anaphase-promoting com 36.6 6.4E+02 0.014 28.1 20.7 278 162-486 208-500 (564)
292 KOG2041 WD40 repeat protein [G 35.9 3E+02 0.0064 32.6 10.7 22 8-29 406-427 (1189)
293 PF10300 DUF3808: Protein of u 35.0 7.2E+02 0.016 28.2 18.3 180 208-449 174-374 (468)
294 PRK10564 maltose regulon perip 34.0 68 0.0015 33.9 5.1 44 383-426 252-296 (303)
295 KOG2610 Uncharacterized conser 33.9 4.2E+02 0.0091 28.6 10.7 116 365-483 116-235 (491)
296 TIGR03504 FimV_Cterm FimV C-te 33.7 68 0.0015 23.5 3.6 23 393-415 5-27 (44)
297 KOG4555 TPR repeat-containing 33.5 4E+02 0.0087 24.8 10.0 50 363-413 54-103 (175)
298 COG4455 ImpE Protein of avirul 32.9 2.2E+02 0.0047 28.9 8.0 73 358-431 7-81 (273)
299 PF10345 Cohesin_load: Cohesin 32.3 8.9E+02 0.019 28.5 16.9 226 164-463 153-453 (608)
300 PF11207 DUF2989: Protein of u 32.2 3E+02 0.0065 27.4 9.0 79 398-478 118-199 (203)
301 KOG4555 TPR repeat-containing 31.9 4.3E+02 0.0093 24.6 10.6 86 396-483 52-141 (175)
302 KOG0543 FKBP-type peptidyl-pro 31.9 6.8E+02 0.015 27.6 12.3 124 360-486 216-355 (397)
303 PF07721 TPR_4: Tetratricopept 31.5 73 0.0016 20.0 3.2 20 392-411 6-25 (26)
304 KOG4162 Predicted calmodulin-b 30.6 1E+03 0.022 28.6 20.9 284 165-484 459-781 (799)
305 TIGR00305 probable toxin-antit 30.5 41 0.00088 29.9 2.5 22 683-704 86-108 (114)
306 COG3947 Response regulator con 30.4 6.9E+02 0.015 26.6 12.3 41 207-259 149-189 (361)
307 TIGR02508 type_III_yscG type I 30.1 3.9E+02 0.0084 23.7 8.1 49 398-452 50-98 (115)
308 KOG1920 IkappaB kinase complex 29.5 1.3E+03 0.028 29.4 16.1 77 394-481 972-1050(1265)
309 PHA03100 ankyrin repeat protei 28.8 2.1E+02 0.0046 32.2 8.6 173 294-481 42-238 (480)
310 PF11846 DUF3366: Domain of un 28.8 2E+02 0.0043 28.1 7.4 33 454-486 141-173 (193)
311 KOG0548 Molecular co-chaperone 28.6 4.7E+02 0.01 29.9 10.7 103 361-467 11-114 (539)
312 PF07163 Pex26: Pex26 protein; 28.3 4.5E+02 0.0098 27.7 9.7 88 391-480 87-181 (309)
313 PRK15180 Vi polysaccharide bio 28.0 7.6E+02 0.017 28.0 11.8 121 360-484 297-418 (831)
314 KOG2908 26S proteasome regulat 27.6 5.9E+02 0.013 27.5 10.6 85 358-442 81-177 (380)
315 PF11846 DUF3366: Domain of un 27.3 2.2E+02 0.0047 27.8 7.4 61 391-451 112-173 (193)
316 KOG0548 Molecular co-chaperone 27.2 1E+03 0.022 27.4 14.5 89 360-449 306-419 (539)
317 PRK11906 transcriptional regul 27.1 9.2E+02 0.02 27.3 12.6 111 366-482 318-432 (458)
318 PF00515 TPR_1: Tetratricopept 26.5 1.7E+02 0.0037 19.1 4.5 29 192-220 2-30 (34)
319 COG4615 PvdE ABC-type sideroph 26.1 2.6E+02 0.0056 31.0 7.8 113 570-693 393-516 (546)
320 KOG1550 Extracellular protein 25.9 1.1E+03 0.024 27.4 14.4 123 359-486 255-393 (552)
321 COG0457 NrfG FOG: TPR repeat [ 25.6 5.3E+02 0.012 23.7 16.2 126 358-486 65-196 (291)
322 PF10475 DUF2450: Protein of u 25.4 7E+02 0.015 26.2 11.2 112 358-480 104-220 (291)
323 TIGR03504 FimV_Cterm FimV C-te 25.0 1.4E+02 0.003 21.9 4.0 25 428-452 5-29 (44)
324 KOG2297 Predicted translation 23.2 8.4E+02 0.018 26.1 10.6 74 399-477 267-341 (412)
325 KOG0276 Vesicle coat complex C 23.2 5.9E+02 0.013 29.8 10.1 81 351-447 666-746 (794)
326 PF13174 TPR_6: Tetratricopept 22.7 98 0.0021 19.9 2.7 22 465-486 8-29 (33)
327 COG4700 Uncharacterized protei 22.7 7.7E+02 0.017 24.5 12.6 108 382-493 84-194 (251)
328 KOG2114 Vacuolar assembly/sort 22.5 7.3E+02 0.016 30.2 11.1 25 10-34 74-99 (933)
329 KOG2280 Vacuolar assembly/sort 21.4 1.5E+03 0.032 27.4 15.5 112 352-483 685-796 (829)
330 PF11838 ERAP1_C: ERAP1-like C 21.1 8.9E+02 0.019 25.3 11.3 85 358-447 175-262 (324)
331 PF10366 Vps39_1: Vacuolar sor 20.9 4.3E+02 0.0094 23.3 7.2 26 390-415 42-67 (108)
332 PRK14951 DNA polymerase III su 20.8 1.4E+03 0.031 27.0 13.9 100 379-505 197-297 (618)
333 PF13431 TPR_17: Tetratricopep 20.5 1.1E+02 0.0025 20.6 2.7 23 385-407 11-33 (34)
334 COG2040 MHT1 Homocysteine/sele 20.3 1.7E+02 0.0038 30.7 5.0 43 608-652 200-243 (300)
335 PRK07764 DNA polymerase III su 20.2 1.7E+03 0.036 27.5 14.5 45 369-415 182-227 (824)
336 TIGR02508 type_III_yscG type I 20.2 6.2E+02 0.013 22.5 9.3 52 429-486 46-97 (115)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.9e-51 Score=488.74 Aligned_cols=432 Identities=13% Similarity=0.145 Sum_probs=263.6
Q ss_pred cchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCC-----------------------------CCCCcHHHHHH
Q 004743 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSK-----------------------------KDRSEQFQLRV 196 (732)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~-----------------------------~~~p~~~tyn~ 196 (732)
+...+||..+. .+++.++.++|+++|++|.+.|..|+. ++.||.++||+
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34445555555 445555555555555555555544432 33444466666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc-CCC
Q 004743 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDM 275 (732)
Q Consensus 197 lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~-~g~ 275 (732)
||++|++.|++++|+++|++|...|+.||.+|||+||.+|+ +.|++++|.++|. +|... .|+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi 575 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPI 575 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCC
Confidence 66666666666666666666666666666666666666666 6666666666663 55432 244
Q ss_pred C-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCC
Q 004743 276 D-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSI 349 (732)
Q Consensus 276 ~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~p 349 (732)
. |.++||+||.+ |++.|++++|.++|++|.+.|+.|+.++|+ .+|++|+ ++|..+|++|...|+.|
T Consensus 576 ~PD~vTynaLI~a------y~k~G~ldeA~elf~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 576 DPDHITVGALMKA------CANAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred CCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 4 56666666666 666666666666666666666666666666 6666666 45555666777677777
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
|.++|++ ||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||
T Consensus 648 D~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 648 DEVFFSA-LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777766 667777777777777777777777777777777777777777777777777777776666777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHhchHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~~~~~~~~~ 509 (732)
.+||+.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|.+|.+.+..++..+|+.|.++|... ..+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~k 805 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEK 805 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHH
Confidence 7777777777777777777767777777777777777777777777777777776663333333666655554421 111
Q ss_pred hccc-----cchh-------HHHHHHHhhcCCCccccccCCCceeEEEEeeecCCCccCcccccccc-----ccCCH--H
Q 004743 510 LGKK-----KWNE-------SLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDP--I 570 (732)
Q Consensus 510 a~~~-----~~~~-------~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~~-----i~l~~--~ 570 (732)
++.. .|+. .-..+|+. +|++|...|+.|+.+||..++ .+.|...+..+.. +.+.+ .
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~----lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALM----VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHH----HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCc
Confidence 1100 0110 11233444 789999999999999996666 5555544432211 11111 1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHhhcCCccccccccc
Q 004743 571 ETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAAN 613 (732)
Q Consensus 571 e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~v~d~~n 613 (732)
....+...|-+. ....++++..|.++...+-.+++.-+-..
T Consensus 881 ~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~p~~~~~~~~ 921 (1060)
T PLN03218 881 KQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVVPSVSFKKSP 921 (1060)
T ss_pred chhhhHHHHHhh--ccChHHHHHHHHHHHHcCCCCCcccccCc
Confidence 111222222221 11234789999999999877777754443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.1e-51 Score=488.05 Aligned_cols=345 Identities=14% Similarity=0.156 Sum_probs=299.2
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.+.+.+...+|+.+|+.|. .||..+||.+|.+|++.|+++.|+++|++|++.|+.||..+||+||.+|+
T Consensus 415 ~~~~~g~~~eAl~lf~~M~----------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~- 483 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIR----------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA- 483 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcC----------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Confidence 4567788999999999992 27889999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
+.|++++|.++|+ +|.+. |+. |.+|||+||.+ |++.|++++|.++|++|.+.|+.|
T Consensus 484 ---------k~G~vd~A~~vf~-------eM~~~-Gv~PdvvTynaLI~g------y~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 484 ---------KSGKVDAMFEVFH-------EMVNA-GVEANVHTFGALIDG------CARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred ---------hCcCHHHHHHHHH-------HHHHc-CCCCCHHHHHHHHHH------HHHCcCHHHHHHHHHHHHHcCCCC
Confidence 8999999999994 78776 777 88999999999 999999999999999999999999
Q ss_pred Cccccchhhhhhccc-----cccCCCchhhhc--cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 004743 318 NGHMKLNSQLLDGRS-----NLERGPDDQSRK--KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (732)
Q Consensus 318 d~~ty~~~~li~~~~-----~~a~~~~~~m~~--~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (732)
|.+||+ .+|.+++ +.|..+|.+|.. .|+.||.++||+ ||++|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 541 D~vTYn--sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna-LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 541 DRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA-LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999 9999988 567779999975 688999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
|+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHhccccchhHHHHHHHhhcCCCccccccCCCceeEEEEeee
Q 004743 471 GKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~v 549 (732)
|++++|.++|++|.+.+..|+..+|++ |.++|+.+...+|. .+|.+|...|+.|+.++| +.
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl-----------------elf~eM~~~Gi~Pd~~Ty-~s 759 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL-----------------EVLSEMKRLGLCPNTITY-SI 759 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH-----------------HHHHHHHHcCCCCCHHHH-HH
Confidence 999999999999988833333338888 88888888876555 255556666666666666 33
Q ss_pred cCCCccCcc
Q 004743 550 GGDALCKCC 558 (732)
Q Consensus 550 ~~~G~C~~c 558 (732)
++.++|+.+
T Consensus 760 LL~a~~k~G 768 (1060)
T PLN03218 760 LLVASERKD 768 (1060)
T ss_pred HHHHHHHCC
Confidence 334555444
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-45 Score=447.79 Aligned_cols=412 Identities=12% Similarity=0.032 Sum_probs=311.8
Q ss_pred hhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004743 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (732)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (732)
.+||..+. .+.+.++.++|+++|++|...|+ .||.+||+++|.+|++.+++..+.+++..|.+.|+.||..+
T Consensus 153 ~~~n~li~--~~~~~g~~~~A~~~f~~M~~~g~------~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 153 FSWNVLVG--GYAKAGYFDEALCLYHRMLWAGV------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred eEHHHHHH--HHHhCCCHHHHHHHHHHHHHcCC------CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 34444444 44445555555555555533322 22335555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHH
Q 004743 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (732)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (732)
||+||.+|+ ++|++++|..+|+ +|... |.++||+||.+ |++.|++++|.++|+
T Consensus 225 ~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 225 VNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLELFF 277 (857)
T ss_pred HhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHHHHH
Confidence 555555555 9999999999996 56543 88999999999 999999999999999
Q ss_pred HHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 004743 309 EKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (732)
+|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||..+||+ ||++|++.|++++|.++|++|.
T Consensus 278 ~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 278 TMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH-HHHHHHhcCCHHHHHHHHhhCC----
Confidence 999999999999999 9999887 556779999999999999999999 9999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||+|
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHhccc------cc--hh---HHHHHHHhhc----
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKK------KW--NE---SLIKDTMENK---- 527 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~------~~--~~---~~v~ea~~~~---- 527 (732)
|++|++.|++++|.++|++|.+. ...+|+. |.++++.+...+|..- .. +. ..+..+..+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999999653 2337777 7778777665544310 00 00 0000000000
Q ss_pred --CCCccccccCCCceeEEEEeeecCCCccCccccccc--cccCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhhcC
Q 004743 528 --GGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA--IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603 (732)
Q Consensus 528 --g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~--~i~l~~~e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~~~ 603 (732)
.+++..|...|+.++...+ +.+++++|+++...-+ .++-.+.+...|...|..++.+|...++++.|++|.+.+.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HhHHHHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1134456667777777777 6677788877754322 2211134556788889999999999999999999998865
Q ss_pred Cccc
Q 004743 604 PFEA 607 (732)
Q Consensus 604 pyD~ 607 (732)
.+|.
T Consensus 586 ~Pd~ 589 (857)
T PLN03077 586 NPDE 589 (857)
T ss_pred CCCc
Confidence 4444
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=445.29 Aligned_cols=390 Identities=11% Similarity=0.014 Sum_probs=290.9
Q ss_pred ccchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 145 IKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (732)
Q Consensus 145 ~~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p 224 (732)
.....++|..+. ...+.++.++|.++|++| ..||.++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 155 ~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 155 EPDQYMMNRVLL--MHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred CcchHHHHHHHH--HHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 345667777776 777888888999999988 23677999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHH
Q 004743 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (732)
Q Consensus 225 d~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (732)
|..||+++|.+|+ +.|..+.+.+++. .+.+. |+. |.++||+||++ |++.|++++|
T Consensus 223 ~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~~~~A 278 (697)
T PLN03081 223 EPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGDIEDA 278 (697)
T ss_pred ChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCCHHHH
Confidence 9999999999998 6777777777774 44444 666 77778888888 8888888888
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHH
Q 004743 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (732)
Q Consensus 304 ~~lf~eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (732)
.++|++|.. ||+++|| .++.+|+ ++|..+|.+|...|+.||.+||++ +|.+|++.|++++|.+++++|
T Consensus 279 ~~vf~~m~~----~~~vt~n--~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 279 RCVFDGMPE----KTTVAWN--SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI-MIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHhCCC----CChhHHH--HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhccchHHHHHHHHHH
Confidence 888888853 5788888 7777777 556678888888888888888888 888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 888888888888888888888888888888888875 3688888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCChhHHHH-HHHHHhchHHHHhccccchhHHHHHHHhhcCCCcccccc
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~-~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~ 536 (732)
||+++|.+|++.|++++|.++|++|.+ .+..|...+|++ |..+++.|...+|. . ++.+|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~-------------~----~~~~~-- 488 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY-------------A----MIRRA-- 488 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH-------------H----HHHHC--
Confidence 888888888888888888888888865 322233337776 77777776654443 1 23333
Q ss_pred CCCceeEEEEeeecCCCccCccccccc------cccCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhhc
Q 004743 537 LGKGKWIVSHTTVGGDALCKCCGEKLA------IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602 (732)
Q Consensus 537 ~g~~p~~vt~t~v~~~G~C~~c~~~L~------~i~l~~~e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~~ 602 (732)
++.|+..+| +.+..+.|..+...+. .+.+.++....+...+..++..|.-.++.+.|+.|.+++
T Consensus 489 -~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 489 -PFKPTVNMW-AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred -CCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 456777776 4455555554443221 123333333334444445566676677788888888776
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=435.96 Aligned_cols=390 Identities=12% Similarity=0.070 Sum_probs=283.6
Q ss_pred hhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004743 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (732)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (732)
.++|..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..+
T Consensus 88 ~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 88 VSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred eeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 34566665 6778899999999999996433 3457779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHH
Q 004743 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (732)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (732)
||.||.+|+ ++|++++|.++|+ +|.+. |+++||+||.+ |++.|++++|.++|+
T Consensus 161 ~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----~~~t~n~li~~------~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 161 MNRVLLMHV----------KCGMLIDARRLFD-------EMPER----NLASWGTIIGG------LVDAGNYREAFALFR 213 (697)
T ss_pred HHHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CeeeHHHHHHH------HHHCcCHHHHHHHHH
Confidence 999999999 9999999999995 66543 89999999999 999999999999999
Q ss_pred HHHHcCCCCCccccc---------------------------------hhhhhhccc-----cccCCCchhhhccCCCCC
Q 004743 309 EKENLGQFSNGHMKL---------------------------------NSQLLDGRS-----NLERGPDDQSRKKDWSID 350 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~---------------------------------~~~li~~~~-----~~a~~~~~~m~~~g~~pd 350 (732)
+|.+.|+.||..||+ ...++++|+ +.|..+|++|.. +|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 999998888887776 013444444 445556666653 46
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
+++||+ ||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||+
T Consensus 290 ~vt~n~-li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 290 TVAWNS-MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred hhHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 777777 7777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHH
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAAR 509 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~ 509 (732)
+|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.+..|+..||.. |.++++.|..
T Consensus 369 ~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~-- 442 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS-- 442 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH--
Confidence 7777777777777777775 46777777777777777777777777777777733333336666 4555444443
Q ss_pred hccccchhHHHHHHHhhcCCCcccccc-CCCceeEEEEeeecCCCccCccccccc--cc---cCCHHHHHHHHHHHHHHH
Q 004743 510 LGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKLA--II---DLDPIETEKFAESVASIA 583 (732)
Q Consensus 510 a~~~~~~~~~v~ea~~~~g~~~~~m~~-~g~~p~~vt~t~v~~~G~C~~c~~~L~--~i---~l~~~e~~~l~~~i~~~a 583 (732)
+++.. +|+.|.. .|+.|+..+| +.+++++|+.+...-+ .+ .+.+ +...|...+....
T Consensus 443 -----------~~a~~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~~~Ll~a~~ 505 (697)
T PLN03081 443 -----------EQGWE----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKP-TVNMWAALLTACR 505 (697)
T ss_pred -----------HHHHH----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Confidence 33333 6777764 5788888777 6666777776653211 11 1111 1122444444444
Q ss_pred HhhccchhHHHHHHHHh
Q 004743 584 IKRERNSSFQKFQKWLD 600 (732)
Q Consensus 584 ~~~~~~~~~~~F~~~l~ 600 (732)
.++....+...+++.++
T Consensus 506 ~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 506 IHKNLELGRLAAEKLYG 522 (697)
T ss_pred HcCCcHHHHHHHHHHhC
Confidence 55555555555555543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-44 Score=433.50 Aligned_cols=345 Identities=12% Similarity=0.040 Sum_probs=280.6
Q ss_pred cchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004743 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (732)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (732)
+...+||..+. .+.+.++..+|+++|++|.+.|+.| |.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g~~P------d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELSVDP------DLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 34455666666 6667777777777777776555443 337777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHH
Q 004743 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (732)
Q Consensus 226 ~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~ 305 (732)
..+||+||.+|+ ++|++++|.++|+ +|... |.++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~~----d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMETK----DAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCCC----CeeeHHHHHHH------HHhCCCHHHHHH
Confidence 777777777777 8999999999995 56543 88999999999 999999999999
Q ss_pred HHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh
Q 004743 306 TFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (732)
Q Consensus 306 lf~eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~ 380 (732)
+|++|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||..+||+ ||++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999 9999887 566779999999999999999999 99999999999999999999974
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004743 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (732)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (732)
+|.++||+||.+|++.|+.++|.++|++|.. ++.||..||+++|.+|++.|+++.+.+++..|.+.|+.+|..++
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 6788999999999999999999999999975 58899999999999999999999999999988888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHhccccchhHHHHHHHhhcCCCccccccCCC
Q 004743 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539 (732)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~ 539 (732)
|+||++|++.|++++|.++|++| .++..+|++ |.++++.|...+|. . +|++|...|+
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~-------------~----lf~~M~~~g~ 585 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAV-------------E----LFNRMVESGV 585 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHH-------------H----HHHHHHHcCC
Confidence 88888888888888888888877 223447777 77777776654444 2 7777888888
Q ss_pred ceeEEEEeeecCCCccC
Q 004743 540 GKWIVSHTTVGGDALCK 556 (732)
Q Consensus 540 ~p~~vt~t~v~~~G~C~ 556 (732)
.||.+||.. +..++|.
T Consensus 586 ~Pd~~T~~~-ll~a~~~ 601 (857)
T PLN03077 586 NPDEVTFIS-LLCACSR 601 (857)
T ss_pred CCCcccHHH-HHHHHhh
Confidence 888888843 3344343
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.83 E-value=1.7e-21 Score=186.00 Aligned_cols=119 Identities=29% Similarity=0.422 Sum_probs=91.2
Q ss_pred ccccccceecc--cCCCCChhhHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHHcCceeeCCCCCC
Q 004743 607 AVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSN 684 (732)
Q Consensus 607 ~v~d~~nv~~~--~~~~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 684 (732)
|||||+|||+. .+..|++.+|..+|++|++ +|+.+++|++..+........+.+.+.+++|.+.+.++.||++++
T Consensus 5 VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~~ 81 (155)
T PF11977_consen 5 VVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGSN 81 (155)
T ss_dssp EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEEE
T ss_pred EEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCCC
Confidence 89999999853 2335999999999999999 788888888766533223356778899999999999999999997
Q ss_pred --------chHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 685 --------DDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 685 --------DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
||||||++|.+.+|+|||||+||||.+ ....|.+|.++|+|+|+
T Consensus 82 ~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~t 133 (155)
T PF11977_consen 82 YGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFT 133 (155)
T ss_dssp TTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--E
T ss_pred CCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEE
Confidence 999999999999999999999999999 56689999999999985
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.68 E-value=7.7e-15 Score=162.10 Aligned_cols=276 Identities=15% Similarity=0.042 Sum_probs=206.0
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd---~~tyn~LL~~~~~ 238 (732)
..++.++|...|+++.+.. +.+..+|..+...+.+.|++++|..+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996542 22446889999999999999999999999997643332 256778888888
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
+.|++++|..+|. ++.+. ...+..+++.++.. +.+.|++++|..+|+.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55543 22256679999999 9999999999999999987642221
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
.... ...|.. +...+.+.|++++|...|+++.+.. +.+...+..+...|.
T Consensus 176 ~~~~----------------------------~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 176 RVEI----------------------------AHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred hHHH----------------------------HHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 1100 001223 5667778888999999998887653 334567778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
+.|++++|.++|+++...+-.....+++.+..+|++.|+.++|.+.++.+.+. .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 89999999999988876532222456788888888999999999988888775 4676777888888888899999999
Q ss_pred HHHHHHhccCCCChhHHHH-HHHHH
Q 004743 479 LLHKLRTSVRKVSPSTADV-IAKWF 502 (732)
Q Consensus 479 l~~~M~~~~~~~~p~t~~~-I~~~~ 502 (732)
+|+++.+. .|...++.. +..++
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhh
Confidence 98887766 555445554 44443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=2.1e-13 Score=150.74 Aligned_cols=269 Identities=12% Similarity=0.073 Sum_probs=212.7
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.....++.++|..+++.+...+ ..........|..+...|.+.|+++.|+.+|+++.+.. +++..+++.+...|.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~- 152 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQ- 152 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHH-
Confidence 3447789999999999986532 11011123578899999999999999999999998752 456789999999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc-----cccccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN-----GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~-----~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
+.|++++|.+.+. .+... +..+. ..|..+... +.+.|++++|..+|+++.+.
T Consensus 153 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 153 ---------QEKDWQKAIDVAE-------RLEKL-GGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred ---------HhchHHHHHHHHH-------HHHHh-cCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 8899999999995 44443 22211 124556666 78899999999999999775
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
. |+.. ..+.. +...|.+.|++++|.++|+++...+......+++.+
T Consensus 210 ~--p~~~-------------------------------~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 210 D--PQCV-------------------------------RASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred C--cCCH-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 2 3321 12223 778899999999999999999976433335678999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---c
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---A 470 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~ 470 (732)
+.+|++.|++++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999876 477777889999999999999999999998876 6999999999998875 5
Q ss_pred CChHHHHHHHHHHHhccCCCChh
Q 004743 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|+.+++..+|++|.+....+.|+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999885556664
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=4.7e-11 Score=144.96 Aligned_cols=283 Identities=12% Similarity=-0.019 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|..+..+|.+.|++++|+..|+.+.+.. +.+...+..+...|. +.|+.++|...+. .+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555555566666666665555432 223444555555555 5566666666663 2222
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhcc-----ccccCCCchhhhccC
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR-----SNLERGPDDQSRKKD 346 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~-----~~~a~~~~~~m~~~g 346 (732)
. ...+..+|..+... +...|++++|..+++.|.+... ++...+. .+...+ -..|...+..+...
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~- 732 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKR- 732 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 1 11144456666666 6666677777777766665542 2222222 111111 13444455555543
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
.|+..++.. +...+.+.|+.++|.+.++++.... +.+..+++.+...|...|+.++|.++|+++.+.. +.+...++
T Consensus 733 -~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 -APSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred -CCCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 244445555 6677777777777777777777653 4566777777777777888888888887777653 34566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-hhHHH-HHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTAD-VIAKWFNS 504 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~-p~t~~-~I~~~~~~ 504 (732)
.+...+.+.|+ .+|.++++.+.+.. .-+..++..+...+...|++++|..+|+++.+. .+. +.++. ....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 77777777777 77777777776542 223445566777778888888888888888876 443 33443 36666766
Q ss_pred hHHHHhc
Q 004743 505 KEAARLG 511 (732)
Q Consensus 505 ~~~~~a~ 511 (732)
|...+|.
T Consensus 885 g~~~~A~ 891 (899)
T TIGR02917 885 GRKAEAR 891 (899)
T ss_pred CCHHHHH
Confidence 6655444
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=7.5e-11 Score=143.16 Aligned_cols=310 Identities=11% Similarity=0.009 Sum_probs=215.1
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|.+.|+.+.+... + +...+..++..+.+.|++++|+++++.+... .+++..+|..+...|.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 476 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDP--E-----LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-- 476 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCC--c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--
Confidence 3466788888888888754321 1 1245566778888888888888888888754 3456778888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|+.++|...|. ++... ...+...+..+... +...|++++|..+|+++.... +.+.
T Consensus 477 --------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 477 --------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred --------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 7788888888884 33332 22244446666677 788888888888888887654 1233
Q ss_pred cccchhhhhhcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004743 320 HMKLNSQLLDGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (732)
Q Consensus 320 ~ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI 394 (732)
.++. .+...+ .+.|...+..+...+ ..+...+.. +...|.+.|++++|.++++++.... +.+..+|..+.
T Consensus 534 ~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 534 RAIL--ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA-LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH-HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 3333 222222 244455555554432 223344445 7888888999999999999887643 55778888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
.+|...|++++|...|+.+.+.. +.+...+..+...|.+.|+.++|..+++.+.+.. ..+..++..+...+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998887653 3356678888888888999999999998887653 345778888888889999999
Q ss_pred HHHHHHHHHHhccCCCChh-HHHH-HHHHHhchHHHHhc
Q 004743 475 RVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a~ 511 (732)
+|..+++.+... .+... .+.. ...++..+...++.
T Consensus 687 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 687 SAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 999999988876 43333 4443 44555565554443
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.4e-12 Score=99.61 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
||+++||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2.6e-12 Score=98.07 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=49.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 420 pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999986
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=3.1e-10 Score=118.96 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCccc-------------------CCCCChh
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP-------------------AKSGSGM 253 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~-------------------~k~g~~~ 253 (732)
+=|.|+. ....|.+..+.-+|+.|..+|+..+...--.|+...|--+.-.+.+ =|.|.+.
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4455554 4567899999999999999999999888888887766322110000 0333332
Q ss_pred hHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc-
Q 004743 254 RTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS- 332 (732)
Q Consensus 254 ~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~- 332 (732)
+ -+|. ..- +..-||.+||.| +|+--.++.|.++++|-.+...+-+..+|| .+|.+-+
T Consensus 197 d--L~~E--------~~P----KT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN--~lI~~~S~ 254 (625)
T KOG4422|consen 197 D--LLFE--------TLP----KTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN--GLIGASSY 254 (625)
T ss_pred H--HHHh--------hcC----CCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--hhhhHHHh
Confidence 2 2221 111 166789999999 999999999999999999998899999999 8887766
Q ss_pred cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 004743 333 NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM-AF 407 (732)
Q Consensus 333 ~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~-A~ 407 (732)
...+.+..+|.+..+.||..|+|+ ++++..+.|+++. |.+++.+|++-|+.|...+|.-+|..+++.++..+ |.
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 455779999999999999999999 9999999997654 56889999999999999999999999999888743 44
Q ss_pred HHHHHHHHc----CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhcCC
Q 004743 408 DMVKRMKSL----GINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE---PELEALLRVSVEAGK 472 (732)
Q Consensus 408 ~l~~~M~~~----g~~p----d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~---~ty~~Li~~~~~~g~ 472 (732)
.++.++... .++| |..-|-..+..|.+..+.+.|.++..-.... -+.|+. .-|.-+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 445444432 3333 3456778899999999999999998776533 123332 235678888899999
Q ss_pred hHHHHHHHHHHHhccCCCChhHHHHHHHHHhchH
Q 004743 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506 (732)
Q Consensus 473 ~~~A~~l~~~M~~~~~~~~p~t~~~I~~~~~~~~ 506 (732)
.+.-+..++.|.-+..+|.+-+...|........
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~ 447 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN 447 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcC
Confidence 9999999999988766666655555544444433
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.8e-09 Score=111.85 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
.||.+||.++||--..+.|.++|.+-.....+.+..+||.||.+-+- ....+++ .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--------------~~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--------------SVGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--------------hccHHHH-------HHHHH
Confidence 79999999999999999999999999998889999999999988662 2224555 36766
Q ss_pred cCCCC-CccccccccccccccccccccCChhH----HHHHHHHHHHcCCCCCccccchhhhhhccc
Q 004743 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDD----LDSTFNEKENLGQFSNGHMKLNSQLLDGRS 332 (732)
Q Consensus 272 ~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~----A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~ 332 (732)
. .+. |..|+|+++.+ .++.|.++. |.+++.||++.|+.|...+|. .+|.-++
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~ 323 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFK 323 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhc
Confidence 5 555 99999999999 999998865 478889999999999999998 6666665
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.04 E-value=1.2e-09 Score=123.29 Aligned_cols=257 Identities=13% Similarity=0.051 Sum_probs=163.7
Q ss_pred HHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC
Q 004743 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (732)
Q Consensus 171 ~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g 250 (732)
.++-.|+..|+.|++ +||..+|.-||..|+++.|- +|.-|+-.....+...|+.++.+.. ..+
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 456678888888888 99999999999999999999 9999998888888899999999888 444
Q ss_pred ChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC--CCCCccccc-hh--
Q 004743 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG--QFSNGHMKL-NS-- 325 (732)
Q Consensus 251 ~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g--i~Pd~~ty~-~~-- 325 (732)
+.+.+.+. -.-||+.|+.+ |...|++..-..+=..|.... ..|..+--. ..
T Consensus 74 d~Enpkep------------------~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEP------------------LADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCC------------------chhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 44433322 23479999999 999999765222222232210 111111000 00
Q ss_pred hhhhccc---c---------ccCCCchhhhccCCCCChhhhHHHHHHHHHhcc-CHHHHHHHHHHHHhCCC-CCCHHHHH
Q 004743 326 QLLDGRS---N---------LERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMCLDEV-PMNEASLT 391 (732)
Q Consensus 326 ~li~~~~---~---------~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g-~~~~A~~lf~~M~~~gi-~pd~~ty~ 391 (732)
..+++.- . .-+++++...+.+..--+..|+.-..-..-.+. ......++.+. .+.+. .|+..+|.
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~-cksl~e~~~s~~l~ 208 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNM-CKSLVEAPTSETLH 208 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHH-HHHhhcCCChHHHH
Confidence 0000000 0 001112222222111011111110100000110 11222333332 23333 48999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (732)
+++++-..+|+++.|..++.+|++.|+..+..-|.+||-+ .++...+..+..-|.+.|+.|+..||.-.+..+.++|
T Consensus 209 a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 209 AVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9999999999999999999999999999998888888876 8888888999999999999999999988777777755
Q ss_pred C
Q 004743 472 K 472 (732)
Q Consensus 472 ~ 472 (732)
.
T Consensus 286 ~ 286 (1088)
T KOG4318|consen 286 Q 286 (1088)
T ss_pred h
Confidence 4
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.96 E-value=4.7e-07 Score=106.80 Aligned_cols=290 Identities=10% Similarity=-0.076 Sum_probs=193.7
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~ 237 (732)
.....++..+|+.+++.....-.. .| ..+..+..++...|++++|++.|+++... .|+ ...+..+-..+.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~-----~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKN-----GR--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCC-----ch--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 344778999999999888554211 12 23444446666799999999999998864 343 445656666666
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 7788999998885 33321 11144557777778 888999999999888776553222
Q ss_pred Cccccch-hhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004743 318 NGHMKLN-SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (732)
Q Consensus 318 d~~ty~~-~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (732)
....+.. ..+..+-..+|...+..+....-.++...+.. +...+.+.|+.++|.+.|++..... +.+...+..+-..
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLA 255 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1111110 01111112344444554443321122222322 5677888899999999999888764 3456778888888
Q ss_pred HHhcCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004743 397 AMSMGDGDM----AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAG 471 (732)
Q Consensus 397 ~~~~g~~~~----A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g 471 (732)
|...|+.++ |...|++..+.. +.+...+..+-..+.+.|+.++|...+++..+.. |+ ...+..+-.+|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 888998885 788888877642 2345678888888888999999999998887653 44 445666778888899
Q ss_pred ChHHHHHHHHHHHhc
Q 004743 472 KGDRVYYLLHKLRTS 486 (732)
Q Consensus 472 ~~~~A~~l~~~M~~~ 486 (732)
++++|...|+++...
T Consensus 333 ~~~eA~~~l~~al~~ 347 (656)
T PRK15174 333 QYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999888765
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=3.3e-06 Score=99.67 Aligned_cols=281 Identities=7% Similarity=-0.034 Sum_probs=182.8
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~ 240 (732)
..++.++|...|+.+.+. .|+ +...|..+-..+.+.|++++|+..|+++... .| +...+..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~--~P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAV--NVC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHh--CCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---
Confidence 466777777777777432 111 2245666666777777777777777777653 23 3455666666666
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..|+.++|...+. .+... ...+...+..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 6677777777663 22221 11121122111 23 556677777777777765543222222
Q ss_pred ccchhhhhh-----ccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHH
Q 004743 321 MKLNSQLLD-----GRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASL 390 (732)
Q Consensus 321 ty~~~~li~-----~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~ty 390 (732)
.+. .+.. +...+|...+...... .|+ ...++. +-..|.+.|++++ |...|++..... +.+...+
T Consensus 214 ~~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~ 287 (656)
T PRK15174 214 SAG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIV 287 (656)
T ss_pred HHH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHH
Confidence 221 1111 1113344444444432 243 334444 7788899999886 899999988753 3466789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-EALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty-~~Li~~~~ 468 (732)
..+...+...|++++|...+++.... .|+ ...+..+-..|.+.|++++|...|+.+.+. .|+...+ ..+..++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 99999999999999999999998865 354 456667788899999999999999999875 4655443 33456789
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|+.++|...|++..+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998765
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1e-08 Score=71.08 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004743 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (732)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (732)
|+.||.+|||+||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 20
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=1.6e-08 Score=70.12 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=32.1
Q ss_pred cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 004743 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (732)
+|+.||++|||+ ||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~-lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNT-LIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHH-HHHHHHHCCCHHHHHHHHHhCc
Confidence 588999999999 9999999999999999999995
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.66 E-value=8.3e-06 Score=95.97 Aligned_cols=256 Identities=11% Similarity=0.041 Sum_probs=186.5
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~ 241 (732)
++.++|.+.|+...+.+. ..| +...|+.+-..+...|++++|+..|+..... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 466788888888765441 122 3467788888888999999999999998864 454 456666666677
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
..|++++|...|. +..+. .-.+...|..+-.. +...|++++|...|++.... .|+..
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~~- 433 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDFI- 433 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccCH-
Confidence 7789999999995 33332 22245557777777 88899999999999887664 23321
Q ss_pred cchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004743 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (732)
Q Consensus 322 y~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (732)
..|.. +-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 434 ------------------------------~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 434 ------------------------------FSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 12223 6677889999999999999987642 345788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLR------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~------ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (732)
++++|.+.|++.....-..+.. .++..+..+...|++++|.+++++..+.. .-+...+..|...+.+.|+.++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999876542111111 12222333445699999999999987654 2334578899999999999999
Q ss_pred HHHHHHHHHhc
Q 004743 476 VYYLLHKLRTS 486 (732)
Q Consensus 476 A~~l~~~M~~~ 486 (732)
|..+|++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999988665
No 22
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.63 E-value=1.2e-06 Score=99.78 Aligned_cols=244 Identities=12% Similarity=0.029 Sum_probs=152.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-Cccccccccccccc
Q 004743 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (732)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~ 290 (732)
.++-.|...|+.|+.+||.+||.-|| ..|+++.|- +|. -|.-+ ..+ +...++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 35677889999999999999999999 778888887 884 23333 555 77779999999
Q ss_pred cccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCC-Cchhhh--------------------------
Q 004743 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSR-------------------------- 343 (732)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~-~~~~m~-------------------------- 343 (732)
...+++.+.+. .|-.-||. .+..+|.....- .|+...
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 89999888776 46666676 555444421110 000000
Q ss_pred --ccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 344 --KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (732)
Q Consensus 344 --~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p 420 (732)
..+.-||..+ .|--..-.|.++.+.+++..|.... ..|-.+ .|+-+... ..-..++....+...-.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCC
Confidence 0011111111 1222222333333333333332211 001111 12222221 122333443333322258
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HH
Q 004743 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IA 499 (732)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~ 499 (732)
+..+|.+++++-..+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-+..++..|+..+..|..+|+.. ++
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 9999999999999999999999999999999999998888888866 7888888899999999944444448766 77
Q ss_pred HHHhchH
Q 004743 500 KWFNSKE 506 (732)
Q Consensus 500 ~~~~~~~ 506 (732)
..+.++.
T Consensus 280 p~l~N~~ 286 (1088)
T KOG4318|consen 280 PQLSNGQ 286 (1088)
T ss_pred hhhcchh
Confidence 7777554
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.61 E-value=2.2e-07 Score=98.12 Aligned_cols=255 Identities=17% Similarity=0.121 Sum_probs=104.7
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~ty-n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
+.++.++|+++++.-.... .+|+...| ..+-..+-..++.+.|++.|+++...+-. +...|..++.. .
T Consensus 20 ~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--- 88 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c---
Confidence 6688999999996542211 12222344 44444556678999999999999876533 45566666666 4
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..++.++|..++. +.-+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 -------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~-- 144 (280)
T PF13429_consen 89 -------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD-- 144 (280)
T ss_dssp ---------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred -------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC--
Confidence 5677888888874 22121 1244446677777 8889999999999988765321111
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~ 400 (732)
+...|.. +-..+.+.|+.++|.+++++..+.. +-|....+.++..+...
T Consensus 145 -----------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 145 -----------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDM 193 (280)
T ss_dssp ------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTT
T ss_pred -----------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC
Confidence 2222223 5577888999999999999988763 22577889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|+...... ..|......+-+++...|+.++|..+.
T Consensus 194 ~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 99999999998887764 4566677888889999999999999999988653 346777788899999999999999988
Q ss_pred HHHH
Q 004743 481 HKLR 484 (732)
Q Consensus 481 ~~M~ 484 (732)
.+.-
T Consensus 272 ~~~~ 275 (280)
T PF13429_consen 272 RQAL 275 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.50 E-value=1.7e-05 Score=88.24 Aligned_cols=276 Identities=8% Similarity=-0.004 Sum_probs=181.1
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcc
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL--YLCSSAA 240 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL--~~~~~~~ 240 (732)
.|+...|++....-.+ ....|. ..|-..-.+..+.|+++.|.+.|.++.+ ..|+...+..++ ..+.
T Consensus 97 eGd~~~A~k~l~~~~~------~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD------HAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHh------cccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 4788888877776521 111233 4454455666899999999999999986 356655444333 3445
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..|+.+.|...++ ++.+. ...+......+... |.+.|++++|..++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 32255567788888 999999999999999999987653321
Q ss_pred -------ccchhhhhhcc-cccc----CCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH
Q 004743 321 -------MKLNSQLLDGR-SNLE----RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (732)
Q Consensus 321 -------ty~~~~li~~~-~~~a----~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (732)
+|. .++... .... ..++...... .|+.......+...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 111100 0000 0111111110 1222222233677888888888888888887764 45542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
-.++.+.+..++.+++.+..+...+. .|+. ..+.++=..|.+.+++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 22344555668888888888887755 3444 44566667788888888898888888865 58888888888888
Q ss_pred HhcCChHHHHHHHHHH
Q 004743 468 VEAGKGDRVYYLLHKL 483 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M 483 (732)
.+.|+.++|.+++++-
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888888888888754
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.50 E-value=2.1e-05 Score=78.92 Aligned_cols=199 Identities=17% Similarity=0.118 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...|. ..|+.++|...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~~---------- 89 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSFR---------- 89 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH----------
Confidence 3667778888899999999999999987653 223455555555555 5566666666653
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
+..+.. |+. ..+
T Consensus 90 --------------------------------------~al~~~--~~~~~~~--------------------------- 102 (234)
T TIGR02521 90 --------------------------------------RALTLN--PNNGDVL--------------------------- 102 (234)
T ss_pred --------------------------------------HHHhhC--CCCHHHH---------------------------
Confidence 332221 111 111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
.. +...+...|++++|.+.|++...... ......+..+...+...|+.++|.+.+.+..... +.+...+..+
T Consensus 103 -----~~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 175 (234)
T TIGR02521 103 -----NN-YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLEL 175 (234)
T ss_pred -----HH-HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHH
Confidence 11 44555666777777777777665322 1233455666667777777777777777766542 2234566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...+...|+.++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 67777777777777777777665 234455566666777777777777777776654
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.48 E-value=1.7e-05 Score=79.54 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=133.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++..+.. |+.... +.. +...|...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~-------------------------------~~~-la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDYLA-------------------------------YLA-LALYYQQLGELEKAED 86 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHH-------------------------------HHH-HHHHHHHcCCHHHHHH
Confidence 778889999999998887653 443222 112 6677888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
.+++..... +.+...+..+...+...|++++|.+.+++.......| ....+..+-..+...|+.++|...+++..+..
T Consensus 87 ~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999988764 3456788889999999999999999999988753222 34566677788999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHh
Q 004743 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARL 510 (732)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a 510 (732)
..+...+..+...+...|+.++|..++++.... ....+..+.. ..-+...+...++
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 234667888889999999999999999998776 1223333333 4444444444333
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.44 E-value=1.4e-06 Score=91.87 Aligned_cols=251 Identities=15% Similarity=0.075 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCC
Q 004743 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (732)
Q Consensus 196 ~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~ 275 (732)
.+-..+.+.|++++|+++++.-....-.|+...|-.++..++. ..++.+.|...+. .+... +-
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-cc
Confidence 3356677899999999999766554435666666555554442 5677888888884 44332 22
Q ss_pred CCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhH
Q 004743 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (732)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn 355 (732)
.+...|..++.. ...+++++|.+++.+.-++. ++.. .+.
T Consensus 76 ~~~~~~~~l~~l-------~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~l~ 114 (280)
T PF13429_consen 76 ANPQDYERLIQL-------LQDGDPEEALKLAEKAYERD--GDPR--------------------------------YLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-------cccccccccccccccccccc--cccc--------------------------------hhh
Confidence 222234443332 36778888887776554432 2211 222
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 004743 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (732)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~ 433 (732)
. ++..+.+.++++++.+++++.... ..+.|...|..+...+.+.|+.++|.+++++..+. .|+ ....+.++..+.
T Consensus 115 ~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 115 S-ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3 667788999999999999998753 34578888999999999999999999999998775 464 677888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHHHHhchHHHHh
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARL 510 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a 510 (732)
..|+.+++.++++...... ..|...+..+-.+|...|+.++|...|++.... .|... +... ...+-..|...+|
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 9999999999998887664 445566788999999999999999999998876 44333 2222 3344444444333
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.44 E-value=4.3e-05 Score=96.31 Aligned_cols=294 Identities=11% Similarity=0.001 Sum_probs=166.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
..+.++.++|.+.|++..+. . +.+...+..+-..+...|++++|++.|++..+.. +.+...+..+...|...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~--~-----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQV--D-----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 44678899999999998654 1 1234677788899999999999999999998643 22233444443333210
Q ss_pred ccC--------------------------------CcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccc
Q 004743 240 AVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287 (732)
Q Consensus 240 ~~~--------------------------------~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~ 287 (732)
... +......|+.++|+..|. +..+. ...+...+..+-..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH
Confidence 000 000113577777777774 33322 22233445556666
Q ss_pred ccccccccccCChhHHHHHHHHHHHcCCCCCccc--cchhhhhhccc--cccCCCchhhhccCCCCChhh---------h
Q 004743 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD---------A 354 (732)
Q Consensus 288 ~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t--y~~~~li~~~~--~~a~~~~~~m~~~g~~pd~~t---------y 354 (732)
+.+.|++++|...|++..+. .|+... |..+.+..... ..|...+..+......++... +
T Consensus 505 ------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 ------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred ------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 88889999999999888764 243221 11111111000 122222222211111111110 0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004743 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (732)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~ 434 (732)
.. +...+...|+.++|.++++. .+.+...+..|-..+.+.|+.++|.+.|++..+.. +-+...+..+...|..
T Consensus 577 l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 11 33456666777777776661 23444556666667777777777777777766542 2235566667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+.++|.+.++...+. .|+ ...+..+-.++.+.|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 77777777777765543 232 334455556666777777777777776554
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.42 E-value=8.3e-05 Score=89.64 Aligned_cols=286 Identities=9% Similarity=-0.006 Sum_probs=157.0
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++..+|.+++++..+. .+.+...+..+...+...|++++|+..+++..+. -+.+.. +..+-.++.
T Consensus 61 ~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~---- 127 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK---- 127 (765)
T ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH----
Confidence 556666666666665322 1122344556666666677777777777776654 122333 445544555
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
..|+.++|+..+. +..+. ...+...+..+... +...+..+.|...++.... .|+...
T Consensus 128 ------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 128 ------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 5566666766663 22221 11122223334444 5555666666655543322 222100
Q ss_pred cc----hhhhhhcc-------------ccccCCCchhhhcc-CCCCChh-hhHHH---HHHHHHhccCHHHHHHHHHHHH
Q 004743 322 KL----NSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEI---RLSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 322 y~----~~~li~~~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~---lI~~~~k~g~~~~A~~lf~~M~ 379 (732)
.. ...++... .+.|...++.+... .-.|+.. .+... .+..+...|++++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00 00000000 01122223333321 1122221 11111 1234456688999999999998
Q ss_pred hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-
Q 004743 380 LDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG- 452 (732)
Q Consensus 380 ~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g- 452 (732)
..+-. |+-. --.+...|...|++++|..+|+++.... |. ...+..+..++...|+.++|.++++.+.+..
T Consensus 265 ~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 265 AEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred ccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 87632 4321 1224668889999999999999876542 22 2345556667889999999999999888652
Q ss_pred ----------CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 453 ----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 453 ----------v~pd~---~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-.|+. ..+..+...+...|+.++|.++|+++...
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12342 23456667788889999999999998776
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.41 E-value=0.00018 Score=84.85 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=164.9
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSS 238 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~ 238 (732)
..+.++.++|.+.|+.... ..|+...|..+-.+|.+.|++++|++.++...+. .| +...|..+-.+|.
T Consensus 137 ~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~- 205 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD- 205 (615)
T ss_pred HHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH-
Confidence 4467899999999998743 2345578888999999999999999999998865 34 4557777777777
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc-----------------------------cccccc-----
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN-----------------------------GQLDYG----- 284 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~-----------------------------~tyn~L----- 284 (732)
..|++++|+.-|... ....++.+. -.+..+
T Consensus 206 ---------~lg~~~eA~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 206 ---------GLGKYADALLDLTAS-------CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred ---------HcCCHHHHHHHHHHH-------HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 778888887655311 000000000 000000
Q ss_pred ---------------------cccccc----cccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCc
Q 004743 285 ---------------------SSPMID----KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPD 339 (732)
Q Consensus 285 ---------------------I~~~~~----~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~ 339 (732)
..+... .......+.+++|...|++....+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------------------------- 324 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------------------------- 324 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-------------------------
Confidence 000000 000011133444444444444332
Q ss_pred hhhhccCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004743 340 DQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (732)
Q Consensus 340 ~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (732)
...|+. ..|+. +-..+...|++++|...|++..+. .|+ ..+|..+...+...|++++|...|++..+..
T Consensus 325 ------~~~~~~a~a~~~-lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 325 ------KLGEKEAIALNL-RGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred ------CCChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 112222 23333 556666778888888888877654 343 4577777777888888888888888776542
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 418 ~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+-+...|..+-..+...|++++|...|++..+.. ..+...+..+-..+.+.|+.++|...|++....
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2235667777777888888888888888777653 223555666777777888888888888877654
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.41 E-value=4.5e-05 Score=85.11 Aligned_cols=281 Identities=9% Similarity=-0.022 Sum_probs=178.2
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~-~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~--tyn~LL~~~~~ 238 (732)
..|+...|++.+....+. .|+ ...|-..-.++.+.|+.+.|.+.|.+..+.- |+.. ..-.....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568899999998765221 232 2334444567778899999999999987543 4432 2222344555
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
..|+.+.|...+. ++.+. ...+...+-.+... +.+.|++++|.+++..+.+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6789999999995 55554 33355556777777 9999999999999999999875433
Q ss_pred ccccc------hhhhhhccccccCCCchhhhccCCCC-----ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH
Q 004743 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDWSI-----DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (732)
Q Consensus 319 ~~ty~------~~~li~~~~~~a~~~~~~m~~~g~~p-----d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~ 387 (732)
..... .+.+-.+....+...+..+... .| +...+.. +...+...|+.++|.+++++..+.. ||.
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~ 296 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDD 296 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCc
Confidence 32211 0111111111111122222211 12 3334444 7778888888888888888887753 333
Q ss_pred HHH-HHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 388 ASL-TAVGRM--AMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 388 ~ty-~~LI~~--~~~~g~~~~A~~l~~~M~~~g~~pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
... -.++.. ....++.+.+.+.++...+. .|+.. ...++=..|.+.|++++|.+.|+........|+...+.
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 211 012222 23356777777777765543 34443 33455566778888888888888544444578888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 004743 462 ALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 462 ~Li~~~~~~g~~~~A~~l~~~M 483 (732)
.+-..+.+.|+.++|.+++++-
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888764
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.33 E-value=0.00025 Score=89.49 Aligned_cols=123 Identities=9% Similarity=0.031 Sum_probs=86.7
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH----
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK-LGQYHYNVLLY---- 234 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~-pd~~tyn~LL~---- 234 (732)
....++.++|...|++..+.. +.+...+..+-..+.+.|++++|+..|++..+..-. +....+..++.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 346788999999999885531 124578888889999999999999999998864321 12222322221
Q ss_pred --------HHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHH
Q 004743 235 --------LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (732)
Q Consensus 235 --------~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (732)
.+. +.|++++|+..|. +.... .-.+...+..|-.. +...|++++|.+.
T Consensus 352 ~~~~~~g~~~~----------~~g~~~eA~~~~~-------~Al~~-~P~~~~a~~~Lg~~------~~~~g~~~eA~~~ 407 (1157)
T PRK11447 352 WLLIQQGDAAL----------KANNLAQAERLYQ-------QARQV-DNTDSYAVLGLGDV------AMARKDYAAAERY 407 (1157)
T ss_pred HHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHH
Confidence 233 6789999999995 44432 21244456666667 8899999999999
Q ss_pred HHHHHHc
Q 004743 307 FNEKENL 313 (732)
Q Consensus 307 f~eM~~~ 313 (732)
|++..+.
T Consensus 408 y~~aL~~ 414 (1157)
T PRK11447 408 YQQALRM 414 (1157)
T ss_pred HHHHHHh
Confidence 9998865
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.26 E-value=0.00046 Score=83.31 Aligned_cols=290 Identities=10% Similarity=-0.044 Sum_probs=186.4
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~ 238 (732)
+.+.++.++|...+++..+. .| .+.. |..+-.++...|+.++|+..++++.+. .|+ ...+..+..++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-
Confidence 34778999999999998543 22 2334 888888999999999999999999975 344 344445555555
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccC----CCC----CccccccccccccccccccccCCh---hHHHHHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~----g~~----d~~tyn~LI~~~~~~~~~~~~g~~---~~A~~lf 307 (732)
..|..+.|+..+.. ..... ++. ....-..+... ....+++ ++|...+
T Consensus 162 ---------~~~~~e~Al~~l~~-------~~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAIDD-------ANLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 56777888877741 11110 000 00001111222 3334445 7788888
Q ss_pred HHHHHc-CCCCCcc-ccch------hh-hhhccccccCCCchhhhccCCC-CCh-hhhHHHHHHHHHhccCHHHHHHHHH
Q 004743 308 NEKENL-GQFSNGH-MKLN------SQ-LLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIYE 376 (732)
Q Consensus 308 ~eM~~~-gi~Pd~~-ty~~------~~-li~~~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (732)
+.+.+. ...|+.. .+.. +. +..+....|...|..+...+-. |+- ..+ +-..|...|++++|..+|+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHHH
Confidence 888754 2333332 1110 01 1122235566677777765421 332 222 3457888999999999999
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---hhhHHHHHHHHHhcCChH
Q 004743 377 KMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 377 ~M~~~gi~p---d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----------~~pd---~~ty~~lI~~~~~~g~~~ 439 (732)
+.....-.. ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 877543111 13456667778889999999999999887652 1123 224455667888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|.++++++.... .-+...+..+...+...|+.++|++.+++....
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 9999999987653 344667778888888999999999999988776
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=9e-05 Score=76.36 Aligned_cols=229 Identities=16% Similarity=0.133 Sum_probs=165.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLGQYHYNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd~~tyn~---LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~t 280 (732)
....++|.++|-+|.+. |..||.+ |=+.|- +.|.+++|+.+.. .+.+. +..|
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfR----------sRGEvDRAIRiHQ-------~L~~s----pdlT 102 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFR----------SRGEVDRAIRIHQ-------TLLES----PDLT 102 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHH----------hcchHHHHHHHHH-------HHhcC----CCCc
Confidence 47889999999999973 3444443 334455 7899999999995 55554 4445
Q ss_pred ccccccc-ccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 281 LDYGSSP-MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 281 yn~LI~~-~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
++-=+-+ ......|-..|-+|.|..+|..+...|... ..+. -.|+
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa----------~~Al------------------------qqLl 148 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA----------EGAL------------------------QQLL 148 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh----------HHHH------------------------HHHH
Confidence 4432222 222344778899999999999887654210 0011 1188
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~ 434 (732)
.-|-+..++++|.++-+++...|-.+.. .-|.-|...+....+.+.|..++++-.+. .|+.+--++++ ..+..
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELA 226 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHh
Confidence 8899999999999999998887655432 24555666666788899999999876654 34444334333 46778
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
.|+.++|.+.++...+.+-.--..+...|..+|.+.|+.++....+.++.+...++.+.
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 89999999999999998766666788999999999999999999999999886666665
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.13 E-value=0.00063 Score=83.19 Aligned_cols=230 Identities=8% Similarity=-0.041 Sum_probs=167.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...|..+-.++.. ++..+|+..|.+..... |+......+...+. ..|+.++|...|. .+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 44666666666665 89999999888877543 66554333334444 6799999999995 33
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
... -++...+..+... +.+.|++++|...|++..+.. |+....
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 322 1122223344445 778999999999999887653 332111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~l 428 (732)
+.. +.....+.|++++|...|++..+. .|+...|..+-..+.+.|+.++|...+++.... .|+ ...++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223344569999999999998865 467889999999999999999999999997765 455 4566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-..+...|+.++|.++++...+.. .-+...+..+-.++...|+.++|...|++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 678999999999999999988753 234567788888999999999999999998765
No 36
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=3e-06 Score=58.63 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (732)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 37
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.10 E-value=0.00024 Score=78.67 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=169.1
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
+.+++...+|+.+++.|.+.. | -.+..|..+-.++...|+...|.+.|.+..+ +.|+.+...+-+.-+.+
T Consensus 126 ~kerg~~~~al~~y~~aiel~--p-----~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk- 195 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK--P-----KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK- 195 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC--c-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH-
Confidence 347889999999999996542 2 1346899999999999999999999998876 45776665555544443
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|++++|..-+. +.++.... =.+.|+-|=.. +...|+...|..-|++-... .|+-
T Consensus 196 --------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~f 251 (966)
T KOG4626|consen 196 --------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPNF 251 (966)
T ss_pred --------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCcc
Confidence 3477777777764 22222211 23446666666 77788888888888877654 3332
Q ss_pred c-cc-chhhhhhccccccCCCchhh-----hccCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHH
Q 004743 320 H-MK-LNSQLLDGRSNLERGPDDQS-----RKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASL 390 (732)
Q Consensus 320 ~-ty-~~~~li~~~~~~a~~~~~~m-----~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty 390 (732)
. .| |.|.+.. +...|+.. ....+.|+. +.|-+ |-..|-..|.+|-|+..+++-.+. .|+ ...|
T Consensus 252 ~dAYiNLGnV~k-----e~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 252 LDAYINLGNVYK-----EARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred hHHHhhHHHHHH-----HHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 1 11 1111111 11111111 112334432 22333 445566667777777777776653 343 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~ 468 (732)
|.|-.++-..|++.+|.+.++..... .|+ .-+-+.|=..|...|.++.|..+|....+- .|.. ...|-|-..|-
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHH
Confidence 77777777777777777777665543 233 334455666677777777777776655432 3332 34555666666
Q ss_pred hcCChHHHHHHHHHHH
Q 004743 469 EAGKGDRVYYLLHKLR 484 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~ 484 (732)
+.|++++|...+++..
T Consensus 400 qqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL 415 (966)
T ss_pred hcccHHHHHHHHHHHH
Confidence 6677777666666543
No 38
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.1e-06 Score=57.05 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (732)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 555666666666666666666666666565555
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.05 E-value=0.0012 Score=79.32 Aligned_cols=128 Identities=13% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHH
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFC 433 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~ 433 (732)
+-++.+.|++.++.+.|+.|...|.+....+--++.++|...+++++|+.++.+..... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 45677888899999999999988876555688889999999999999999999886542 2334444678889999
Q ss_pred hcCChHHHHHHHHHHHHCC-------------CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~g-------------v~pd~~ty-~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+++++|..+++.+.+.- -.||-..+ ..++..+...|+..+|++.++++...
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998731 11333333 34566678899999999999999766
No 40
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=5.6e-06 Score=57.10 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p 224 (732)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999998
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.02 E-value=0.0014 Score=78.54 Aligned_cols=283 Identities=9% Similarity=-0.052 Sum_probs=186.6
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HH
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---YL 235 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~--~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL---~~ 235 (732)
.+.|+...|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.. .|+...+..++ ..
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~l 111 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARA 111 (822)
T ss_pred HhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHH
Confidence 3678888999999988432 2221 233 88888889999999999999988 34333333333 34
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCC
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi 315 (732)
|. ..|++++|++++. ++.+. .-.|.-.+..|+.. +...++.++|+..++.....
T Consensus 112 y~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~-- 165 (822)
T PRK14574 112 YR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER-- 165 (822)
T ss_pred HH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc--
Confidence 55 6799999999994 55544 33344445566666 88999999999999988766
Q ss_pred CCCccccchhhhhhcc---c--cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHH--------------
Q 004743 316 FSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE-------------- 376 (732)
Q Consensus 316 ~Pd~~ty~~~~li~~~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~-------------- 376 (732)
.|+...|- .+..-+ . ..|...+.++... .|+...+..-++....+.|-...|.++..
T Consensus 166 dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 166 DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 45544442 111111 1 2355667777664 57655554446666666666555544433
Q ss_pred ----------------------------------HHHh-CCCCCCH-HHH-H---HHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 377 ----------------------------------KMCL-DEVPMNE-ASL-T---AVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 377 ----------------------------------~M~~-~gi~pd~-~ty-~---~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
.+.. .+-.|.. .-| . =.+-++...|+.+++.+.++.|...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 2221 1111221 111 1 2233666788888888888888888
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|.+.-..+--.+-++|...++.++|..+|..+.... ..++......|.-+|...+++++|..+++++.+.
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 765445566778888888899999999988886542 2334444678888888889999999999888873
No 42
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=9.3e-06 Score=55.99 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p 420 (732)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.91 E-value=0.0021 Score=78.63 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=155.5
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~ 243 (732)
++.++|...+.+-... .|+......+...+...|++++|...|+.+... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777888877765332 234344334445556899999999999997653 455555555555666
Q ss_pred cccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 244 ~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
+.|+.++|...+. ..... +..+...+..+... ....|++++|...|++-.+. .|+.
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~---- 609 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSA---- 609 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCH----
Confidence 7799999999995 33322 11111112122222 33459999999999887654 2432
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (732)
..|.. +-..+.+.|+.++|.+.|++..... +-+...++.+-..+...|+.
T Consensus 610 ----------------------------~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 610 ----------------------------NAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ----------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 23335 6678999999999999999988764 34567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004743 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (732)
++|..++++..+. .| +...+..+-.++...|++++|...++...+. .|+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9999999987765 35 4567778888999999999999999998865 3543
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=97.88 E-value=0.0017 Score=75.54 Aligned_cols=249 Identities=12% Similarity=0.021 Sum_probs=129.2
Q ss_pred CCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004743 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (732)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~---------k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~ 235 (732)
...+|..+|++..+. .|+ +...|..+-.++. ..+++++|...+++..+.. +-+...+..+-..
T Consensus 276 ~~~~A~~~~~~Al~l--dP~-----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~ 347 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPN-----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHhc--CCc-----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 346788888876332 121 2234444433332 3345889999999888653 2245555555445
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCC
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi 315 (732)
+. ..|+.++|...|. +..+. +..+...|..+-.. +...|++++|...|++..+..
T Consensus 348 ~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~- 402 (553)
T PRK12370 348 NT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD- 402 (553)
T ss_pred HH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC-
Confidence 55 5677888888874 33222 11133335555455 666777777777777665542
Q ss_pred CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004743 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (732)
Q Consensus 316 ~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~ 395 (732)
|+...+. .. +...+...|++++|.+.+++.....-+-+...+..+-.
T Consensus 403 -P~~~~~~-------------------------------~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 403 -PTRAAAG-------------------------------IT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVM 449 (553)
T ss_pred -CCChhhH-------------------------------HH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 3211110 01 22234445667777777777655431113344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCh
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKG 473 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~ 473 (732)
++...|+.++|...+.++... .|+. ...+.+-..|+..| ++|...++.+.+. .-.|...-+..++ |.-.|+-
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~ 523 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEA 523 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhh
Confidence 666777777777777665433 2332 22333334455555 3666655555432 1122222223333 3334544
Q ss_pred HHHHHHHHHHHhc
Q 004743 474 DRVYYLLHKLRTS 486 (732)
Q Consensus 474 ~~A~~l~~~M~~~ 486 (732)
+.+..+ +++.+.
T Consensus 524 ~~~~~~-~~~~~~ 535 (553)
T PRK12370 524 IAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHH-HHhhcc
Confidence 444444 555544
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.0023 Score=71.99 Aligned_cols=284 Identities=15% Similarity=0.062 Sum_probs=189.8
Q ss_pred CchHHHHHHHHhhcCCCCCCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcccC
Q 004743 166 DSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQREG-I-KLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 166 ~~~A~~v~~~M~~~g~~~~~~~~p~~-~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G-i-~pd~~tyn~LL~~~~~~~~~ 242 (732)
..+|...|..+ |. ..+|+ .+..-+=.+|-..+++++|.++|+...+.. . .-+...|+++|.-+-+.
T Consensus 335 ~~~A~~~~~kl------p~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--- 403 (638)
T KOG1126|consen 335 CREALNLFEKL------PS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--- 403 (638)
T ss_pred HHHHHHHHHhh------HH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---
Confidence 34566666554 22 22332 344455578889999999999999998542 2 23678999999777621
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC-Cccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHM 321 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P-d~~t 321 (732)
-++..+. +++.+. .-....||.++=++ |+-.++.+.|.+.|++-.+. .| ...+
T Consensus 404 -----------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faYa 457 (638)
T KOG1126|consen 404 -----------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAYA 457 (638)
T ss_pred -----------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccchh
Confidence 2222222 233322 11255789999999 99999999999999876654 34 4455
Q ss_pred cchhhhhhccc-------cccCCCchhhhccCCCCChhhhHHH--HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004743 322 KLNSQLLDGRS-------NLERGPDDQSRKKDWSIDNQDADEI--RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (732)
Q Consensus 322 y~~~~li~~~~-------~~a~~~~~~m~~~g~~pd~~tyn~~--lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~ 392 (732)
|+ +-|+. +.|...|. +.+..|...||+. |=-.|.|.++++.|+--|++..+-+ +-|.+....
T Consensus 458 yT----LlGhE~~~~ee~d~a~~~fr----~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~ 528 (638)
T KOG1126|consen 458 YT----LLGHESIATEEFDKAMKSFR----KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCH 528 (638)
T ss_pred hh----hcCChhhhhHHHHhHHHHHH----hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhh
Confidence 54 33333 33333333 3455677777762 2345778899999999998877654 346677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAG 471 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t-y~~Li~~~~~~g 471 (732)
+-..+-+.|+.|+|++++++-....-+--..-|. ....+...++.++|+..++++++. .|+..+ |-.|-..|.+-|
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHc
Confidence 7788889999999999999877654333334444 445566788999999999999864 677654 556667888899
Q ss_pred ChHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 004743 472 KGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 472 ~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~ 501 (732)
+.+.|+.=|.-+.+. .|.+.- ..|...
T Consensus 606 ~~~~Al~~f~~A~~l--dpkg~~-i~~k~~ 632 (638)
T KOG1126|consen 606 NTDLALLHFSWALDL--DPKGAQ-IQIKAA 632 (638)
T ss_pred cchHHHHhhHHHhcC--CCccch-hhHHHH
Confidence 999999888887765 555433 334443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.86 E-value=0.0016 Score=72.51 Aligned_cols=218 Identities=8% Similarity=-0.032 Sum_probs=153.6
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-------HYNVL 232 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~-------tyn~L 232 (732)
....++.+.|.+.++++.+.. +-+...+..+...|.+.|++++|++++..+.+.+..++.. +|..+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346688889999999884432 1233678888999999999999999999999887653221 22223
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
+.... +....+....++. .+.+. .+ +.-..-.+..+ +...|+.++|.+++.+..
T Consensus 236 ~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 236 MDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHH
Confidence 33222 1122223333332 12111 11 33334455556 888999999999998776
Q ss_pred HcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004743 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 312 ~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~ 391 (732)
+. .||.. ..++-+.+..++.+++.+..+...+.. +-|...+.
T Consensus 291 ~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l 332 (398)
T PRK10747 291 KR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWS 332 (398)
T ss_pred hc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHH
Confidence 63 23221 114455556799999999999988763 44566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
++-..|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999998865 6999999999999999999999999998754
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=97.84 E-value=0.0034 Score=72.90 Aligned_cols=240 Identities=9% Similarity=-0.059 Sum_probs=120.5
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhc
Q 004743 189 SEQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (732)
Q Consensus 189 p~~~tyn~lI~a~~k-----~g~~~~A~~lf~~M~~~Gi~pd~-~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~ 262 (732)
.+...|...+.+-.. .+++++|+++|++..+. .|+. ..|..|-.+|......+. ....++.++|...+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~-- 328 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAI-- 328 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHH--
Confidence 344566666666432 23578999999998854 4543 344444333331110000 012344566666663
Q ss_pred cccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhh
Q 004743 263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQS 342 (732)
Q Consensus 263 ~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m 342 (732)
+..+. +-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 329 -----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~--------------------- 373 (553)
T PRK12370 329 -----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISAD--------------------- 373 (553)
T ss_pred -----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHH---------------------
Confidence 22221 11133334444334 556667777777776665542 32211
Q ss_pred hccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 004743 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (732)
Q Consensus 343 ~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd- 421 (732)
.|.. +-..|...|++++|...+++..+..-. +...+..++..+...|++++|...+++..... .|+
T Consensus 374 ----------a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~ 440 (553)
T PRK12370 374 ----------IKYY-YGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDN 440 (553)
T ss_pred ----------HHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccC
Confidence 1112 445566667777777777776654311 11222233334555666777777766655442 233
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...+..+-.++...|+.++|.+.+.++... .|+.. ..+.|-..|+..| ++|...++.+.+
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 223444455556667777777776665433 23322 2333334445555 355555555544
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.0035 Score=64.98 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=129.5
Q ss_pred cccccchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (732)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~-tyn~lI~a~~k~g~~~~A~~lf~~M~~~ 220 (732)
.+...-+..+|-.++ ...+.|.++|-+|.+ ..|..+ +--+|=+.|-+.|.++.|+.+...+.++
T Consensus 34 ~lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s 98 (389)
T COG2956 34 RLSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES 98 (389)
T ss_pred hccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 344555666666666 568899999999954 223223 2334556778889999999999998864
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCCh
Q 004743 221 GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF 300 (732)
Q Consensus 221 Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~ 300 (732)
|| .|++-=+.+.-.. +..+-..|-+++|+++|. .+++. |..-.-.---|+.- |-...+|
T Consensus 99 ---pd-lT~~qr~lAl~qL---~~Dym~aGl~DRAE~~f~-------~L~de-~efa~~AlqqLl~I------YQ~treW 157 (389)
T COG2956 99 ---PD-LTFEQRLLALQQL---GRDYMAAGLLDRAEDIFN-------QLVDE-GEFAEGALQQLLNI------YQATREW 157 (389)
T ss_pred ---CC-CchHHHHHHHHHH---HHHHHHhhhhhHHHHHHH-------HHhcc-hhhhHHHHHHHHHH------HHHhhHH
Confidence 33 2333322222110 012337899999999995 44433 11111112334455 8888899
Q ss_pred hHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh
Q 004743 301 DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (732)
Q Consensus 301 ~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~ 380 (732)
++|..+-.++...|-.+..+ .+.+-||+ |-..+.-..++++|.+++.+-.+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~-----eIAqfyCE------------------------LAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRV-----EIAQFYCE------------------------LAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHHHHHHHHcCCccchh-----HHHHHHHH------------------------HHHHHhhhhhHHHHHHHHHHHHh
Confidence 99999988888775433322 22233342 22222233344555555554443
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 381 DEVPMNEASLTA-VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 381 ~gi~pd~~ty~~-LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.. |+.+--++ +=+.+...|++..|.+.++...+.+..--..+-..|..+|...|+.++....+.++.+.
T Consensus 209 a~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 209 AD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 32 22221121 12233445555555555555544432222334444555555555555555555555443
No 49
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=2.5e-05 Score=52.50 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi 222 (732)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.72 E-value=0.0074 Score=68.10 Aligned_cols=242 Identities=12% Similarity=0.020 Sum_probs=157.4
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----HHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQ----YHYN 230 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~ty-n~lI~a~~k~g~~~~A~~lf~~M~~---~Gi~pd~----~tyn 230 (732)
.....++.+.|+.+|+.-.+.-.+......|.+.+. +.+=..|...+++.+|..+|.++.. ...-++. .+++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 455678999999999986553111111234443332 3355678888999999999999972 2222332 3444
Q ss_pred HHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHH
Q 004743 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 231 ~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
.|-.+|+ +.|++++|...++ .|.+++..
T Consensus 288 nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~- 315 (508)
T KOG1840|consen 288 NLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK- 315 (508)
T ss_pred HHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH-
Confidence 4445566 6777777777663 33333333
Q ss_pred HHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC---CCCCC-
Q 004743 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMN- 386 (732)
Q Consensus 311 ~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd- 386 (732)
..|.. .|.+.+..+-+...|+..+++++|..+++.-.+. -..++
T Consensus 316 -~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 316 -LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred -hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 11110 1122222222667788888888888888755431 12222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHH----HCC
Q 004743 387 ---EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEHML----EHG 452 (732)
Q Consensus 387 ---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~----~~g 452 (732)
..+|+.|-..|-+.|++++|.+++++.... | ..+. -..++-|=..|.+.+..++|.++|.+-. ..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999987643 1 1222 3456667778888899999999987743 334
Q ss_pred CC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 453 VY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 453 v~-pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.. |+ ..+|.-|...|.+.|+++.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 33 4678899999999999999999988765
No 51
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.1e-05 Score=51.42 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.65 E-value=0.03 Score=63.81 Aligned_cols=293 Identities=11% Similarity=0.038 Sum_probs=183.8
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~-~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.+.+.|+.++|++.++.-.. ..+| ...+...-..+.+.|+.++|..+|..+.+.+ |+-..|-..+..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 45588999999999977522 2233 2455667788899999999999999999876 67676666665554
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCCh-hHHHHHHHHHHHcC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLG 314 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~g 314 (732)
.... .......+....+++ ++... .+ +.+-.=.|. +.....| ..+...+..+..+|
T Consensus 83 g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 83 GLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred hhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhcC
Confidence 1110 001224556666664 33221 11 111111111 2222233 34566667778888
Q ss_pred CCCCccccc-----------hhhhhhcccccc--CCCchhh-hccCCCCChhhhHHHH-HHHHHhccCHHHHHHHHHHHH
Q 004743 315 QFSNGHMKL-----------NSQLLDGRSNLE--RGPDDQS-RKKDWSIDNQDADEIR-LSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 315 i~Pd~~ty~-----------~~~li~~~~~~a--~~~~~~m-~~~g~~pd~~tyn~~l-I~~~~k~g~~~~A~~lf~~M~ 379 (732)
+++--...- ...++.++.... ...+..- ....-.|....|...+ -..|-..|+.++|++.+++-.
T Consensus 142 vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 142 VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 643222221 112222222100 0011100 0111235555555434 356778999999999999888
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 380 LDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 380 ~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
+.. |+ +-.|..-.+.|-+.|++++|.+.+++-..... -|-..-+-....+.++|++++|.+++......+..|-..
T Consensus 222 ~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 222 EHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred hcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 763 54 66888889999999999999999999887754 477778889999999999999999999988777544332
Q ss_pred HH--------HHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 459 EL--------EALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 459 ty--------~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+ ...-.+|.+.|++..|++.|..+.+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 21 3345667889998888877766544
No 53
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.00059 Score=60.16 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEA 462 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~lI~~~~~~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (732)
..|.-|...+++.....+|..+++.|+ .|++.+|+.++.+.++.. .+-..+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444444555666666666666665 566666666665555542 23345667777777777777777777
Q ss_pred HHHHHHh
Q 004743 463 LLRVSVE 469 (732)
Q Consensus 463 Li~~~~~ 469 (732)
+|..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.57 E-value=0.022 Score=60.78 Aligned_cols=282 Identities=12% Similarity=-0.004 Sum_probs=183.6
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
.|++..|+++..+-.+. +..|- ..|-.-..+.-+.||.+.|-.+..+.-+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~------~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH------GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhc------CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 47889999988875333 23343 6778888888999999999999999887633555666666666666
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
..|+.+.|..-++ ++.+. +-.+...-.....+ |.+.|++.+...++..|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~-------~ll~~-~pr~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVD-------QLLEM-TPRHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHH-------HHHHh-CcCChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 5567777776664 22211 22255557777888 99999999999999999999876554322
Q ss_pred c------hhhhhhccc-cccCC---Cchhhhcc-CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004743 323 L------NSQLLDGRS-NLERG---PDDQSRKK-DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 323 ~------~~~li~~~~-~~a~~---~~~~m~~~-g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~ 391 (732)
- .+.+-+.-. ..+.. .+.+...+ .-.|..+ .+ ++.-+.+.|+.++|.++..+-.+++..|.. .
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~--~~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~ 299 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV--VA-YAERLIRLGDHDEAQEIIEDALKRQWDPRL---C 299 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH--HH-HHHHHHHcCChHHHHHHHHHHHHhccChhH---H
Confidence 1 111111111 01111 11111110 0112221 12 566778888999999998888888776662 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH-HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M-~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
. .-.+.+.++.+.-.+..+.- +..+..| -.+.+|=.-|.+++.+.+|.+.|+...+ ..|+..+|+.+-+++.+.
T Consensus 300 ~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 R-LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred H-HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 1 22344566666555555443 3445555 4556666678888999999999985554 468999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 004743 471 GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~ 486 (732)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999998888775433
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.50 E-value=0.011 Score=66.11 Aligned_cols=229 Identities=10% Similarity=-0.022 Sum_probs=148.5
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++.+.|...++++.+.. | -+...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++...-.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~--P-----~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA--P-----RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5788999999999995542 2 13367889999999999999999999999998865433222222222210000
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
........+....... ...+. .. +...+-.+... +...|+.++|..++++..+. .||..
T Consensus 238 ---~~~~~~~~~~L~~~~~-------~~p~~--~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 238 ---EAMADEGIDGLLNWWK-------NQPRH--RRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred ---HHHHhcCHHHHHHHHH-------HCCHH--HhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 0000011112222221 11100 00 33345566667 89999999999999988775 24433
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMA 397 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~ 397 (732)
... +-....-.....++.+.+.+.++...+. .|+. ....++-..|
T Consensus 298 ~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 298 AIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLL 345 (409)
T ss_pred cch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH
Confidence 210 0010112233456778888888776654 2333 4566888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
.+.|++++|.+.|+........||...+..+-..+-+.|+.++|.+++++-.
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999965555567999999999999999999999999998743
No 56
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.0009 Score=73.69 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=91.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
+++.+....+++.+..++-+.+.. ....-..|..++|+.|.+.|..++|..+++.=...|+-||..|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 667777777888888888888765 222223455699999999999999999998888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999988888888888887777777665
No 57
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.34 E-value=0.018 Score=64.37 Aligned_cols=257 Identities=15% Similarity=0.102 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
..+|..+-+.+-..|++++|+.+|+.|.+. +| .+..|--+-.++. ..|+.+.|.+.|. +.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~al 177 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EAL 177 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHH
Confidence 368999999999999999999999999975 34 3567777777787 7788888888885 222
Q ss_pred cccCCCCCccc-cccccccccccccccccCChhHHHHHHHHHHHcCCCCC-ccccc-hhhhhhcccc--ccCCCchhhhc
Q 004743 270 GDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL-NSQLLDGRSN--LERGPDDQSRK 344 (732)
Q Consensus 270 ~~~~g~~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd-~~ty~-~~~li~~~~~--~a~~~~~~m~~ 344 (732)
.-....-+..+ ...|++ ..|++.+|..-+.+-.+. .|. .+.|+ .|.+.....+ .|..-|.+..
T Consensus 178 qlnP~l~ca~s~lgnLlk---------a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv- 245 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLK---------AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV- 245 (966)
T ss_pred hcCcchhhhhcchhHHHH---------hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-
Confidence 21111011212 333333 367888887777655443 231 12222 1111111111 1111111111
Q ss_pred cCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 004743 345 KDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (732)
Q Consensus 345 ~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd- 421 (732)
.+.|+- ..|-+ |=..|...+.+++|...+.+... ..|+ .+.|..|-..|-..|.+|.|.+.+++..+ +.|+
T Consensus 246 -kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F 319 (966)
T KOG4626|consen 246 -KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNF 319 (966)
T ss_pred -cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCc
Confidence 123331 12333 44555555566666666655443 3343 46677777777778888888888877654 3566
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...|+.|-.++-..|++.+|...|.....-. |+ ....+-|-..|...|++++|..+|..-.+
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 4578888888888888888888887776543 33 34556677778888888888888876654
No 58
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.32 E-value=0.0021 Score=56.72 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=67.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGD--------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~--------~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
.|..+...+++.....+|+.+++.|+ .|++.+|+.++++.++..- +-+++.++..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 45566667999999999999999999 8999999999999987432 33678889999999999999999999
Q ss_pred HHHHHhc
Q 004743 429 LSVFCNN 435 (732)
Q Consensus 429 I~~~~~~ 435 (732)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988653
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.31 E-value=0.035 Score=63.33 Aligned_cols=267 Identities=14% Similarity=0.072 Sum_probs=177.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
.+...|++++|++.+..-. +..+|...+--.. ..+. +.|+.++|..++. ++.+. +..|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCcH
Confidence 4578899999999997633 3456665555444 4555 8899999999994 66654 43344
Q ss_pred ccccccccccccccccc-----ccCChhHHHHHHHHHHHcCCCCCccccchhhh-hh-----ccccccCCCchhhhccCC
Q 004743 279 GQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL-LD-----GRSNLERGPDDQSRKKDW 347 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~-----~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l-i~-----~~~~~a~~~~~~m~~~g~ 347 (732)
--|..|..+ .. .....+....+|+++...- |-....- .+ ++ .+-..+......+..+|+
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 447777666 42 2235778889999887653 3322221 11 11 111233334555666664
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 004743 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMVK 411 (732)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------i~pd~~--ty~~LI~~~~~~g~~~~A~~l~~ 411 (732)
.+ .++. |-..|....+.+-..+++...... | -+|... +|.-|...|-..|+.++|++.++
T Consensus 143 Ps---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 143 PS---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred ch---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33 3445 667777666666667777766532 1 134443 44556677888999999999999
Q ss_pred HHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 004743 412 RMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490 (732)
Q Consensus 412 ~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~ 490 (732)
+-.+. .|+ +..|..--..|-+.|++++|.+.+++..... .-|...-+-....+.++|++++|.+++....+...++
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 87765 466 4567777778889999999999999988765 3467777788888899999999999999987774333
Q ss_pred ChhHHHHHHHHHh
Q 004743 491 SPSTADVIAKWFN 503 (732)
Q Consensus 491 ~p~t~~~I~~~~~ 503 (732)
..+...+-..||.
T Consensus 296 ~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 296 LSNLNDMQCMWFE 308 (517)
T ss_pred ccCHHHHHHHHHH
Confidence 3334444344443
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.18 E-value=0.1 Score=55.82 Aligned_cols=247 Identities=14% Similarity=0.028 Sum_probs=143.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 195 RVELDMCSK--RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 195 n~lI~a~~k--~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
..++.+..+ .|++..|.++..+-.+.+-.| +.+.++.+-+- . ..|+.+++...+. +..+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA-~-------qrgd~~~an~yL~-------eaae~ 147 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAA-Q-------QRGDEDRANRYLA-------EAAEL 147 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHH-H-------hcccHHHHHHHHH-------HHhcc
Confidence 345555554 588888888888877777555 33444444331 1 6677777777763 33222
Q ss_pred CCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChh
Q 004743 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 273 ~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (732)
.|=.+...+=+.-.- ....|+...|..-.++..+.+-.+..
T Consensus 148 ~~~~~l~v~ltrarl------ll~~~d~~aA~~~v~~ll~~~pr~~~--------------------------------- 188 (400)
T COG3071 148 AGDDTLAVELTRARL------LLNRRDYPAARENVDQLLEMTPRHPE--------------------------------- 188 (400)
T ss_pred CCCchHHHHHHHHHH------HHhCCCchhHHHHHHHHHHhCcCChH---------------------------------
Confidence 111111112222233 55667777776666665554321111
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
.. .+....|.+.|++.....++.+|.+.|+--|+ .+|+.+++-....+..+.-...++..... .+-+...-
T Consensus 189 vl-rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~ 266 (400)
T COG3071 189 VL-RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELV 266 (400)
T ss_pred HH-HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHH
Confidence 11 23678888888888888888888887765443 36777776666655555555555554332 33344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------------------------------HHHHHHHHHHHhcCChHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------------------------------PELEALLRVSVEAGKGDR 475 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~------------------------------~ty~~Li~~~~~~g~~~~ 475 (732)
.+++.-+.++|+.++|.++.++-.+++..|+. -.+.+|=..|.+.+.+.+
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 55666666667777776666665554444332 334556666677777888
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHH
Q 004743 476 VYYLLHKLRTSVRKVSPSTADVIAKWF 502 (732)
Q Consensus 476 A~~l~~~M~~~~~~~~p~t~~~I~~~~ 502 (732)
|...|+.-.+. .++.++|..+...+
T Consensus 347 A~~~leaAl~~--~~s~~~~~~la~~~ 371 (400)
T COG3071 347 ASEALEAALKL--RPSASDYAELADAL 371 (400)
T ss_pred HHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 88888766555 66666776644333
No 61
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.18 E-value=0.0055 Score=67.61 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=108.2
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 374 lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
++..|.. .+.+.+.+....+++.+....+++++..++...... .......|.+++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 456678889999999999999999999999888766 33334556679999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhc
Q 004743 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (732)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (732)
...|+-||..|||.||+.+.+.|++..|.++..+|......-+|.|+.. +..+++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987755566667665 5544433
No 62
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.12 E-value=0.0042 Score=61.39 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------CChHHHH
Q 004743 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN----------------GDVDKAC 442 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~----------------g~~~~A~ 442 (732)
..|..+|..+|+.|.+ .|.++=....++.|.+-|+.-|+.+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3466667777776664 456666666777777777777777777777766543 2446689
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLR 484 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~l~~~M~ 484 (732)
++++.|+..|+.||..|+..|++.+.+.+..- +..+++--|.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887643 4444444443
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.35 Score=52.89 Aligned_cols=236 Identities=13% Similarity=0.090 Sum_probs=171.6
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--C
Q 004743 202 SKRGDVMGAIRLYDKAQREG-IK-LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--N 277 (732)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G-i~-pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d 277 (732)
-...|+++|+.+|++..+.. .+ -|..+|+-+|..--. +..-.--|..++. +. -
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~--------------idKyR 329 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN--------------IDKYR 329 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH--------------hccCC
Confidence 34679999999999999763 11 368899999877652 1112224444442 11 3
Q ss_pred ccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
.-|+.++-+- |+-.++.+.|...|+.-.+.+ |....-.+.
T Consensus 330 ~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN----------------------------------p~~~~aWTL 369 (559)
T KOG1155|consen 330 PETCCIIANY------YSLRSEHEKAVMYFKRALKLN----------------------------------PKYLSAWTL 369 (559)
T ss_pred ccceeeehhH------HHHHHhHHHHHHHHHHHHhcC----------------------------------cchhHHHHH
Confidence 4456666666 888888999999998776642 222222232
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
|=+-|....+...|.+-++...+-. +.|-..|=.|=.+|.-.+.+.-|+-.|++-.. ++| |.+.|.+|=.+|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhc
Confidence 4478888888899999998877653 56888899999999999999999988887554 455 5789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCChhHHHH---HHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV---RKVSPSTADV---IAKWFNS 504 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~---~~~~p~t~~~---I~~~~~~ 504 (732)
++++|..-|......|- .+...|..|-+.|-+-++.++|...|.+-.+.. ....|.|..+ +..||..
T Consensus 447 ~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred cHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999999988773 366889999999999999999999988765531 1245555433 4445443
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.048 Score=58.71 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=99.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-+-|--..+...|.+++-+... =++-|....+-|-+.|-+.|+-..|++.+-+--.. ++-++.|..-|-..|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 44566666777788887755432 24557889999999999999999999988664433 55577888888888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~l~~~M~~~ 486 (732)
+++|...|+... =+.|+..-|..||..| .+.|++.+|+++++.+.++
T Consensus 642 ~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 642 SEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999998754 3589999999998776 5689999999999999876
No 65
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.022 Score=61.28 Aligned_cols=285 Identities=11% Similarity=0.083 Sum_probs=161.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
+.+.++++.|.+++..+..+..+... -..+--+++.-+--..++..|-++-+..... .-||.---.--..
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~s----aaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn 498 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTAS----AAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGN 498 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhH----HHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCc
Confidence 44667788888888777544332222 1011112222222234566666665555422 2222221111100
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
-.--.|++++|.+.+. |.... +-. ....||+=+.+ -..|++++|+..|-.+...=.---
T Consensus 499 -----~~f~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 499 -----IAFANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred -----eeeecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHHHHhhH
Confidence 0003466777777663 32221 000 11114544433 345667777777655532111001
Q ss_pred ccccchhhhhhccc---cccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRS---NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (732)
Q Consensus 319 ~~ty~~~~li~~~~---~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI 394 (732)
.+.| .+.+-|. +.+..+---|....+.|+ ....+. |-+.|-+.|+-..|++.+-+--. -++.|..|..-|-
T Consensus 559 evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLA 633 (840)
T ss_pred HHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHH
Confidence 1111 2222221 222222222333445554 344444 88899999999999888755432 3567888888898
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (732)
.-|....-+++|...|+.- .=++|+..-|-.+|..|. +.|+..+|+++|.....+ +.-|.....-|++.+...|.
T Consensus 634 ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl- 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL- 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-
Confidence 8999999999999999863 347899999999998665 569999999999998754 56678888888888877774
Q ss_pred HHHHHHHHHH
Q 004743 474 DRVYYLLHKL 483 (732)
Q Consensus 474 ~~A~~l~~~M 483 (732)
.++.++-+++
T Consensus 710 ~d~key~~kl 719 (840)
T KOG2003|consen 710 KDAKEYADKL 719 (840)
T ss_pred hhHHHHHHHH
Confidence 3444444444
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.16 Score=53.03 Aligned_cols=243 Identities=11% Similarity=-0.010 Sum_probs=168.9
Q ss_pred cCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHH
Q 004743 179 KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257 (732)
Q Consensus 179 ~g~~~~~~~~p~~~ty-n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~ 257 (732)
.+.....+..-| .-| +.|=.+|-+-|.+.+|...|..-... .|-+.||-.|-+.|. +..+.+.|+.
T Consensus 211 a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~ 277 (478)
T KOG1129|consen 211 AKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALL 277 (478)
T ss_pred ccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHH
Confidence 333334444444 444 55668889999999999999988765 456678988999999 7788899999
Q ss_pred HhhhccccchhhcccCCCCCcccccc-ccccccccccccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhcccccc
Q 004743 258 TFEVSTMNSTELGDSRDMDNNGQLDY-GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLE 335 (732)
Q Consensus 258 ~~~~~~~~s~em~~~~g~~d~~tyn~-LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a 335 (732)
+|. +-.+ .++-.|||-. +-.. +-..++.++|.+++++-.+.. |+- ...
T Consensus 278 ~~~-------~gld--~fP~~VT~l~g~ARi------~eam~~~~~a~~lYk~vlk~~--~~nvEai------------- 327 (478)
T KOG1129|consen 278 VIG-------EGLD--SFPFDVTYLLGQARI------HEAMEQQEDALQLYKLVLKLH--PINVEAI------------- 327 (478)
T ss_pred HHh-------hhhh--cCCchhhhhhhhHHH------HHHHHhHHHHHHHHHHHHhcC--Cccceee-------------
Confidence 985 2221 1223344321 1122 444567788888887765531 211 111
Q ss_pred CCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 336 RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 336 ~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
.++-.+|.-.++++-|+..+..+..-|+. +...|+.+--+|.-.+++|.++--|.+-..
T Consensus 328 --------------------Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 328 --------------------ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred --------------------eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 11445677788999999999999999975 456777777788889999999999988776
Q ss_pred cCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 416 LGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 416 ~g~~pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.--.|+. -.|-.+=......||+..|.+-|.-...+. .-+...||-|--.-.+.|++++|..+++.-.+.
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5444543 234445555567799999999998887664 234567777776678999999999999887654
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.90 E-value=0.16 Score=59.55 Aligned_cols=266 Identities=12% Similarity=0.045 Sum_probs=162.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc-cCCCC
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD-SRDMD 276 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~-~~g~~ 276 (732)
+..|-+.|+...|.+-|.+|...-=+.|..-+-.+|...+.. +-..+..+.|.+.+. .... ..+..
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~------~~~~~~~e~a~~~le-------~~~s~~~~~~ 314 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY------FITHNERERAAKALE-------GALSKEKDEA 314 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH------HHHhhHHHHHHHHHH-------HHHhhccccc
Confidence 456677788888888888887543222323333344333311 113455578888875 2222 11111
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc----------------------ccchhh--hhhccc
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH----------------------MKLNSQ--LLDGRS 332 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~----------------------ty~~~~--li~~~~ 332 (732)
..-.+|++... +.+...++.|......+..+...||.. +|.... +.-++.
T Consensus 315 ~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 315 SLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred cccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 33447888888 999999999999998888844333332 222000 111111
Q ss_pred -----cccCCCchhhhccCCCC--ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004743 333 -----NLERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405 (732)
Q Consensus 333 -----~~a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~ 405 (732)
.....+.+-.....+.| ++.-|-. +..+|...|++++|+.+|..+...-.--+.+.|--+-++|-..|..++
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 11111223333333222 3334555 778888999999999999998887656678888888999999999999
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 406 AFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML--------EHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 406 A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
|.+.++..... .|+. -.=.+|=.-+-+.|+.++|.+.++.|. ..+..|+....--..+.|.+.|+.++-
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999887654 3432 222334445667899999999888853 345566666666667777788887765
Q ss_pred HHHHHHHHh
Q 004743 477 YYLLHKLRT 485 (732)
Q Consensus 477 ~~l~~~M~~ 485 (732)
...-..|..
T Consensus 546 i~t~~~Lv~ 554 (895)
T KOG2076|consen 546 INTASTLVD 554 (895)
T ss_pred HHHHHHHHH
Confidence 555555443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.86 E-value=0.12 Score=54.92 Aligned_cols=218 Identities=11% Similarity=-0.041 Sum_probs=138.7
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccc
Q 004743 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~-Gi~pd~--~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~t 280 (732)
.+..+.++.-+.++... .+.|+. ..|..+=..|. +.|+.++|...|. +.... ...+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 34567778888887743 233332 33444444455 6789999998885 33322 2225556
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|+.+-.. +...|++++|...|+...+. .|+- ...|.. +-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHH
Confidence 8888777 99999999999999888764 3432 122334 556
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.+...|++++|.+.|+...... |+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 6778899999999999988753 44322222222344577899999999775533 33443222 222 233566655
Q ss_pred HHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+ +.++.+.+. .+ .| ....|..|-..+.+.|+.++|...|++..+.
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2346888888899999999999999998876
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.84 E-value=0.23 Score=49.69 Aligned_cols=207 Identities=13% Similarity=0.003 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
+..-|=-+|-..|+...|..-++...+.. +-+..+|.++-..|- +.|..+.|.+.|. .-+...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~ 99 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLA 99 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcC
Confidence 44455568999999999999999999764 223457777777787 7888999988884 222222
Q ss_pred CCCCCccc-cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 273 RDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 273 ~g~~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
.+-.|+.- |.+. +|..|++++|...|++-... |+-.+- .
T Consensus 100 p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~----------------------------s 139 (250)
T COG3063 100 PNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP----------------------------S 139 (250)
T ss_pred CCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc----------------------------c
Confidence 11112222 3333 67777777777777765543 221111 1
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
.||.+ +.-+..+.|+.+.|.+.|++-.+..- -..-+.-.+.+...+.|+.-.|...++.....|. ++..+.-..|..
T Consensus 140 ~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 140 DTLEN-LGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRI 216 (250)
T ss_pred hhhhh-hHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 23334 33344466777777777776665421 1223455566666667777777666666555544 666666666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
--+.|+.+.|-+.=..+... -|....|.
T Consensus 217 ak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 217 AKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 66666666665544444332 34444443
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.83 E-value=0.012 Score=62.42 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=84.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
.|..|.+.++++.|.+.++.|.+.. .| .+.+-|..++.. ...+.+|+-+|+++... ..++..+.|.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 6778888888888888888888653 34 344445555443 33578888888887554 5677788888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~l~~~M~~~ 486 (732)
..|++++|.+++.+..+.. .-|..+..-+|-+....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888888888888866543 22344555666666677776 6777888888765
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.83 E-value=0.088 Score=59.62 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~---Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
.+..-+-..|...|+++.|..++.+..+. +.-.+.-....++..|+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a------------------------------- 248 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA------------------------------- 248 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH-------------------------------
Confidence 56666899999999999999999998754 11111122222222222
Q ss_pred hcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCC
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
.. |...+++++|..+|+++..- ....+.. -.
T Consensus 249 -----------------~~------y~~~~k~~eAv~ly~~AL~i-------------~e~~~G~-------------~h 279 (508)
T KOG1840|consen 249 -----------------LV------YRSLGKYDEAVNLYEEALTI-------------REEVFGE-------------DH 279 (508)
T ss_pred -----------------HH------HHHhccHHHHHHHHHHHHHH-------------HHHhcCC-------------CC
Confidence 11 66677778888888777542 1111110 00
Q ss_pred CC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 004743 349 ID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVP-MNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSL---G 417 (732)
Q Consensus 349 pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi~-pd~-~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---g 417 (732)
|. ..++++ |-..|++.|++++|...+++-.+ .|.. |.+ .-++.++..|+..+++++|..++..-.+. -
T Consensus 280 ~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 233445 66678999998887777665432 2332 333 34778888899999999999998865432 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 418 INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYPE-EPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 418 ~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~------gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
..++ .-+|+.|=..|-..|++++|.++|++.... +..+. -..++-|-..|.+.+..++|.++|.+-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 2222 357888999999999999999999987643 11222 456778888888999999999999763
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.83 E-value=0.33 Score=53.47 Aligned_cols=143 Identities=12% Similarity=0.026 Sum_probs=115.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHH
Q 004743 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (732)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf 375 (732)
..|..++|+..++++... .||..-|.....+-+.+.++.++|.+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~----------------------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA----------------------------------QPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HhcccchHHHHHHHHHHh----------------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456778888888887654 3555555576788999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004743 376 EKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (732)
Q Consensus 376 ~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (732)
+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|..|-.+|...|+..+|..-..+
T Consensus 364 ~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------- 433 (484)
T COG4783 364 KKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------- 433 (484)
T ss_pred HHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------
Confidence 999876 465 566677888999999999999999987655 566789999999999999999999877665
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+|...|+++.|...+..-++....-.|.
T Consensus 434 -----------~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 434 -----------GYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred -----------HHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 4577899999999998888764334444
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.81 E-value=0.27 Score=53.37 Aligned_cols=230 Identities=11% Similarity=-0.033 Sum_probs=131.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 199 ~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
..+...|++++|.+++++..+.. +-|...+.. ...+.... ...|....+...+. . . . ...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~-~-~~~~~ 112 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-W-A-PENPD 112 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-c-C-cCCCC
Confidence 34567789999999999887652 223334432 11121100 03355555666553 1 0 0 11122
Q ss_pred c--ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 279 G--QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 279 ~--tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
. ....+-.. +...|++++|...+++..+.. |+..... .
T Consensus 113 ~~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~--------------------------------~ 152 (355)
T cd05804 113 YWYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV--------------------------------H 152 (355)
T ss_pred cHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH--------------------------------H
Confidence 2 22333344 778899999999999988764 5543221 1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhH-H--HHH
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PAL 429 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty-~--~lI 429 (732)
.+-..|...|++++|...+++.....- .|+. ..|..+...+...|+.++|..++++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 156677888999999999988776432 2333 3466788888899999999999988754322 1222211 2 334
Q ss_pred HHHHhcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.-+-..|..+.+.+. ......... ............++...|+.++|..++..+...
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444445544433333 211111111 111122225666678888899999999888764
No 74
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.78 E-value=0.01 Score=58.79 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=71.7
Q ss_pred ChhhhHHHHHHHHHhc-----cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 004743 350 DNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFD 408 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----------------g~~~~A~~ 408 (732)
|..+|.. +|+.|.+. |.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.+
T Consensus 46 ~K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444445 66666544 67888888899999999999999999999976542 23467999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 409 l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
++++|...|+.||..|+..|++.|.+.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999888754
No 75
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.65 E-value=0.091 Score=57.82 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=98.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
|+..+...++++.|.++|+++.+.. |++ ...|++.+...++-.+|.+++++.... .+-+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 5566667789999999999999885 664 445888888889999999999988854 22344455555566889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 438 VDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+.|.++.+++.+. .|+.. +|..|..+|.+.|+++.|+..++.+.-
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999875 46655 999999999999999999999998754
No 76
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.0011 Score=72.39 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=77.4
Q ss_pred CccccccccceecccCC--CCChhhHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHHcCceeeCCC
Q 004743 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT 681 (732)
Q Consensus 604 pyD~v~d~~nv~~~~~~--~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (732)
-+-+||||.|||+-..| -|++..+...++.+.+ .++....+++..+|. ....|.. ++.++.+...+-+||+
T Consensus 12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~-~~~rd~tv~~~~~r~----e~~~p~~--~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQ-RGHRDITVLVPSWRK----EATRPDA--ILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccchhheecccceeehhhhhh-hcccCcchhchhhhh----cCCchHH--HHHHHHhccccccCCC
Confidence 45689999999966543 6889999999999988 233333333333332 1123333 7888888888888988
Q ss_pred C--------CCchHHHHHHHHhCCcEEEeCcccccccccc
Q 004743 682 G--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL 713 (732)
Q Consensus 682 ~--------s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l 713 (732)
. ++||||+...|.+.+++|++||..||-.-..
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 7 8999999999999999999999999987643
No 77
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.47 E-value=0.14 Score=62.44 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCh
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKG 473 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~ 473 (732)
.+.|+.+.+..+|+..... .+-..-.|+..|.+=.++|+.+.++.+|++....++.|-- ..|...|..=-..|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 3455555555555554443 2223445555555555555555555555555555554432 3344444444444443
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.47 E-value=0.18 Score=51.40 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=110.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|...|++..... |+.... ...+.. +-..|-+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 778899999999999886642 332111 012223 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChh-hHH----------------
Q 004743 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (732)
Q Consensus 374 lf~~M~~~gi~pd~~--ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~pd~~-ty~---------------- 426 (732)
.++++.+..-..... ++..+-.++... |+.++|.+.|+.+... .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998753221122 333333344433 7788999999998765 24322 111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 -PALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 -~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-..|.+.|+.++|...++...+..- ......+..+..++.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233557788999999999999886631 223567889999999999999999999998776
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.32 E-value=0.6 Score=49.63 Aligned_cols=206 Identities=12% Similarity=-0.000 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|..+=..+.+.|+.++|...|++..+.. +-+...|+.+-..+. ..|++++|...|+ ...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~Al~ 126 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----------QAGNFDAAYEAFD-------SVLE 126 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHH
Confidence 446666667889999999999999998753 235678888888888 8899999999996 3322
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
. .-.+...|..+-.. +...|++++|.+.|+.-.+. .|+-...
T Consensus 127 l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~--~P~~~~~----------------------------- 168 (296)
T PRK11189 127 L-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQD--DPNDPYR----------------------------- 168 (296)
T ss_pred h-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHHH-----------------------------
Confidence 1 22244556666666 78899999999999887664 2332111
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C----CCC-ChhhH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----INP-RLRSY 425 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g----~~p-d~~ty 425 (732)
.+....+...++.++|.+.|++..... .|+...+ .+ .....|+.+++ +.+..+.+. . +.| ....|
T Consensus 169 ----~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~ 239 (296)
T PRK11189 169 ----ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETY 239 (296)
T ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHH
Confidence 101122335678999999997755432 3433222 22 22345666554 355555432 1 112 23578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
..+=..+.+.|+.++|...|++..+.+ .||.+.+-..
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 888889999999999999999998765 3466665543
No 80
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.28 E-value=0.079 Score=55.91 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
+|-. ++...-+.+.++.|..+|.+..+.+ +...+....++|.-+ ..++.+.|.++|+...+. +.-+...|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555 7788888889999999999998653 345555555555433 356777899999998876 55677788889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~----~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.|+.+.|..+|+..... .|.. ..|...|+.=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999865 3444 48999999999999999999999999886
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=1.2 Score=49.03 Aligned_cols=286 Identities=10% Similarity=0.036 Sum_probs=177.1
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++...|.++|+.-. ...|+...|++.|+.=.+...++.|..+|++.+-. .|++.+|--...-=-
T Consensus 153 ~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~---- 218 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE---- 218 (677)
T ss_pred HhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH----
Confidence 4578899999998741 46788899999999999999999999999998853 488888765554444
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
+.|.++.|..++. ...+..|-. +...+++.-.- -.....++.|.-+|.--... .|..
T Consensus 219 ------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk~ 277 (677)
T KOG1915|consen 219 ------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPKG 277 (677)
T ss_pred ------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 7788888888774 222211111 11112222111 11223334444444322221 2222
Q ss_pred cccchhhhhhccc-----------------cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 004743 320 HMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (732)
Q Consensus 320 ~ty~~~~li~~~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (732)
.+- .|-.++. .+-+.-+..+..+ -..|-.+|.- .+..--..|+.+...++|+.....
T Consensus 278 rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 278 RAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred cHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 221 1111111 1111122223222 1224456666 666666778999999999988764
Q ss_pred CCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHH
Q 004743 383 VPMNE--ASLTAVGR-----MA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEHM 448 (732)
Q Consensus 383 i~pd~--~ty~~LI~-----~~---~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~----~~g~~~~A~~l~~~M 448 (732)
++|-. .-|--.|- +| ....+++.+.+++....+. ++-...||.-+--.|+ ++.++..|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45521 11221111 11 2467888889999888773 5556778877666665 457888888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+ |.-|-..+|-..|..=.+-+.+|+...++++..+. +|...
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c 471 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENC 471 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhh
Confidence 5 66788888888888888889999999999888876 54444
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.28 E-value=0.071 Score=43.87 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+...|++++|..+|++..+.. +.+...+..+...+...|++++|.+.++...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34444455555555555444332 1122344444444444455555555554443331 112233334444444444444
Q ss_pred HHHHHHHHH
Q 004743 440 KACSVEEHM 448 (732)
Q Consensus 440 ~A~~l~~~M 448 (732)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444433
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.26 E-value=0.18 Score=46.29 Aligned_cols=97 Identities=8% Similarity=-0.032 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
.....+...+...|+.++|...|+.....+ ..+...|..+-..|.+.|+.++|..+++.....+ ..+...+..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555666667777777666665542 2244555556666666677777777666665543 23344555555566
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|+.++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6677777777777666554
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.23 E-value=0.26 Score=49.15 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=96.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH-HHhcCC--hHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSV-FCNNGD--VDK 440 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~-~~~~g~--~~~ 440 (732)
.++.+++...++...... +.|...|..|-..|...|+.++|...|+...+. .| +...+..+-.+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 445566666666655543 568889999999999999999999999987765 34 45566665555 367777 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHH
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVI 498 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I 498 (732)
|.+++++..+.. .-+...+..|-..+.+.|++++|...++++.+. .+..+ -+.+|
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 999999998775 225667777888889999999999999999876 33333 45555
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.21 E-value=0.11 Score=48.82 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+-..+...|++++|...|....... +.+...|..+-..+.+.|++++|...|+...+.. ..+...+..+-.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444455555555555555544331 1234444444445555555555555555555432 2234444445555555555
Q ss_pred hHHHHHHHHHHHhc
Q 004743 473 GDRVYYLLHKLRTS 486 (732)
Q Consensus 473 ~~~A~~l~~~M~~~ 486 (732)
.++|...|+.....
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.20 E-value=0.15 Score=46.91 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=82.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+...+.+.|++++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++...+.+ +.+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 5677888999999999999988764 4577888899999999999999999999877664 3445666667778999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
.++|...|+...+. .|+...+..+
T Consensus 101 ~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 101 PESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHHHHHHHHh--ccccchHHHH
Confidence 99999999988765 3665554433
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.20 E-value=0.092 Score=55.62 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~ 435 (732)
..+...|++++|++++..- -+.-.....+..|.+.+++|.|.+.++.|.+. ..|.. -.-+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCc
Confidence 4566789999999888642 35566677889999999999999999999865 33433 3334444443 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hH-HHHHHHHHhchH
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-ST-ADVIAKWFNSKE 506 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t-~~~I~~~~~~~~ 506 (732)
+.+.+|+.+|+++.+. ..++..+.|.+.-+....|++++|.+++.+.... .+.. +| .+.|......|+
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCC
Confidence 4799999999998654 5688899999999999999999999999987654 3333 33 444443333333
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.04 Score=57.84 Aligned_cols=194 Identities=9% Similarity=-0.008 Sum_probs=124.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc---------cccCCCchhhhccCCCCChhhhHHHHHHHHHh
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (732)
|.+.+++.+|..+..++... .|-..... |.+..++. +.|...|...-..+..-|.+.-.-.+-+.+.-
T Consensus 295 yL~q~dVqeA~~L~Kdl~Pt--tP~EyilK-gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDPT--TPYEYILK-GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred ecccccHHHHHHHHhhcCCC--ChHHHHHH-HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 66777777777777765321 22222111 11111111 23333444444445554544444446677777
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCChHHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACS 443 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~~g~~~~A~~ 443 (732)
..++++.+-.++..+.-=..-|.+.|| +..+++..|...+|+++|-.+....+ -|..+|-+++ .+|.+++..+.|++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 788899888888888765566777776 77899999999999999976554433 3566776654 57889999999998
Q ss_pred HHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 444 VEEHMLEHGVYPEEPELEA-LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~-Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
++-.|.. ..+..+.-. +-..|-+.+.+--|-+-|+.+... .|+|+-|.-
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 8766542 223333333 335567788888888888888777 888876643
No 89
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=0.18 Score=57.30 Aligned_cols=244 Identities=11% Similarity=-0.006 Sum_probs=149.9
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~-~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
.+.++|+++|+........+ --+...|.+++--+-+.-.+ ..|.++.+.+ +-.+.||-++=++|+
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS----- 432 (638)
T KOG1126|consen 367 IEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS----- 432 (638)
T ss_pred HHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh-----
Confidence 46789999999985432111 22446777776554332111 1233333332 234578888887777
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
-.++.+.|+..|. +...- +....++|+.+=.- +.....+|.|...|.. .+..|...|
T Consensus 433 -----LQkdh~~Aik~f~------RAiQl--dp~faYayTLlGhE------~~~~ee~d~a~~~fr~----Al~~~~rhY 489 (638)
T KOG1126|consen 433 -----LQKDHDTAIKCFK------RAIQL--DPRFAYAYTLLGHE------SIATEEFDKAMKSFRK----ALGVDPRHY 489 (638)
T ss_pred -----hhhHHHHHHHHHH------Hhhcc--CCccchhhhhcCCh------hhhhHHHHhHHHHHHh----hhcCCchhh
Confidence 6677788888884 21111 11133445544444 7778888888888763 355677778
Q ss_pred chhhhhhccc---------cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 323 LNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 323 ~~~~li~~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
+ ..-|+. +.|+.-|.... .+.|.....-..+-..+-+.|+.|+|+++|++.....- -|...---.
T Consensus 490 n---AwYGlG~vy~Kqek~e~Ae~~fqkA~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~ 563 (638)
T KOG1126|consen 490 N---AWYGLGTVYLKQEKLEFAEFHFQKAV--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHR 563 (638)
T ss_pred H---HHHhhhhheeccchhhHHHHHHHhhh--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHH
Confidence 5 222332 22222233222 24454333222245667788999999999999876542 233333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
+..+...++.++|++.++++++. .|+ ...|..+-..|-+.|+.+.|+.-|.-|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55667789999999999999875 455 5667777788999999999998888776543
No 90
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.65 Score=55.05 Aligned_cols=276 Identities=13% Similarity=0.036 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-----HHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~---Gi~pd~~-----tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~ 263 (732)
...|.+=.-.-..|++..|...|...... -..+|.. |---.|..|.. ..++.+.|.+++.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E---------~l~~~~~A~e~Yk--- 520 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE---------ELHDTEVAEEMYK--- 520 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH---------hhhhhhHHHHHHH---
Confidence 67888888888999999999999998754 2334442 22222333331 3456778888874
Q ss_pred ccchhhcccCCCCCcccccccccccccccccccc-------CChhHHHHHHHHHHH-cCCCCCccccchhhhhhc--ccc
Q 004743 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YRFDDLDSTFNEKEN-LGQFSNGHMKLNSQLLDG--RSN 333 (732)
Q Consensus 264 ~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~-------g~~~~A~~lf~eM~~-~gi~Pd~~ty~~~~li~~--~~~ 333 (732)
+..+. |-.-|++ |.+. +...+|...+.+... ....|++.+|- |-+--+ ...
T Consensus 521 ----~Ilke--------hp~YId~------ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~-G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 521 ----SILKE--------HPGYIDA------YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL-GNLHLKKSEWK 581 (1018)
T ss_pred ----HHHHH--------CchhHHH------HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH-HHHHHhhhhhc
Confidence 22221 2233444 3333 456677777766544 34668887774 111111 113
Q ss_pred ccCCCchhhhccCCC-CChhhhHHHH-----HHHHH--------hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004743 334 LERGPDDQSRKKDWS-IDNQDADEIR-----LSEDA--------KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (732)
Q Consensus 334 ~a~~~~~~m~~~g~~-pd~~tyn~~l-----I~~~~--------k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (732)
.|..-|.....+-.. +| +|+.+- +..+- ..+..++|+++|.+..... +-|...=|-+--.++.
T Consensus 582 ~a~k~f~~i~~~~~~~~D--~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTD--AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred ccccHHHHHHhhhccCCc--hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 444444444332111 33 333321 22111 2335688999999877653 4577777888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
.|++.+|.++|.+..+... -+.-+|-.+-++|...|++..|.++|+...+. .-.-+....+.|-+++-+.|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999988754 23446677889999999999999999987654 445567788889999999999999999
Q ss_pred HHHHHHhccCCCChh--HHHHHHHHHhc
Q 004743 479 LLHKLRTSVRKVSPS--TADVIAKWFNS 504 (732)
Q Consensus 479 l~~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (732)
.+..-+.. .|+.. .+++..-.++.
T Consensus 738 ~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 738 ALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 88777665 55554 35553333333
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.06 E-value=0.21 Score=46.96 Aligned_cols=121 Identities=9% Similarity=0.016 Sum_probs=93.5
Q ss_pred CchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004743 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (732)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (732)
+......+.+..|...+.. +-..+...|++++|...|+...... +.+...|..+-.++...|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444444444444544 5677888999999999999988764 4578899999999999999999999999988752
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 418 ~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
+.+...+..+-.++...|+.++|.+.|+...+. .|+...|..+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~ 131 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEI 131 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 346677888888899999999999999998765 4766555533
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.05 E-value=0.98 Score=48.93 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSV 468 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~--~ty~~Li~~~~ 468 (732)
.+-..+...|++++|...+++..+.. +.+...+..+-..|...|++++|...+++.....- .|+. ..|..+-..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445555666666666666655432 12233444455555566666666666655543311 1222 22334555556
Q ss_pred hcCChHHHHHHHHHHH
Q 004743 469 EAGKGDRVYYLLHKLR 484 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~ 484 (732)
..|+.++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666653
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.03 E-value=0.096 Score=43.05 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
+|..+...+...|++++|..++++..+.. ..+...+..+-..+...|++++|.+.++...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2334667778888889999999999999988764 334467888888999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.97 E-value=0.2 Score=47.06 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=86.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVF 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~lI~~~ 432 (732)
++..+ ..++...+.+.++.+.... +.+ ....=.+-..+...|++++|...|+......-.|+.. ..-.|-..+
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 55555 4788899999999998864 222 1222234467788999999999999998876333322 333356777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
...|++++|...++......+ ....+..+=+.|.+.|+.++|...|+.
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 889999999999977544333 334556677788999999999998875
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.91 E-value=0.92 Score=55.77 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=142.1
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCC----CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
..+.++.|+.++. +....-.+. -.-.|-++++. ..--|.-+...++|++..+. +
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqy---------c 1527 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQY---------C 1527 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHh---------c
Confidence 5677888888885 322211222 12236666666 44445556667777766543 1
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (732)
|..+....|..-|.+.++.++|-++|+.|.++= .-....|...+..+.+..+.
T Consensus 1528 --------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1528 --------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred --------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHH
Confidence 222222338899999999999999999999862 24567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 404 DMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
+.|..++.+-.+. .|. +....-....-.+.|+.+.+..+|+.....- .--...|+..|+.=.++|+.+.+..+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999876543 354 2223334444568899999999999988653 223567999999999999999999999
Q ss_pred HHHHhccCCCChh-HHHHHHHHHhc
Q 004743 481 HKLRTSVRKVSPS-TADVIAKWFNS 504 (732)
Q Consensus 481 ~~M~~~~~~~~p~-t~~~I~~~~~~ 504 (732)
++.... ..++. +--....|...
T Consensus 1658 eRvi~l--~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1658 ERVIEL--KLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHhc--CCChhHhHHHHHHHHHH
Confidence 999998 55665 22224555543
No 96
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.89 E-value=0.087 Score=57.97 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=94.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 667789999999999998874 543322 5566666778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
++++.... .+-|......-.+.|.+.++.+.|..+.+++... .|+. .+|..|..+|.+.|+++.|+..++.|.
T Consensus 222 ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99888854 2446777777778888999999999999998865 5664 599999999999999999999998875
No 97
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.33 Score=51.25 Aligned_cols=225 Identities=16% Similarity=0.106 Sum_probs=126.9
Q ss_pred CCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 004743 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (732)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~ 244 (732)
+-+.|++|+-.+. ++.|. .-.| ||--|.+.+|+.+|..+..++. -..| |.-++++...+..| .
T Consensus 269 ngEgALqVLP~L~--------~~IPE-ARlN-L~iYyL~q~dVqeA~~L~Kdl~--PttP----~EyilKgvv~aalG-Q 331 (557)
T KOG3785|consen 269 NGEGALQVLPSLM--------KHIPE-ARLN-LIIYYLNQNDVQEAISLCKDLD--PTTP----YEYILKGVVFAALG-Q 331 (557)
T ss_pred CCccHHHhchHHH--------hhChH-hhhh-heeeecccccHHHHHHHHhhcC--CCCh----HHHHHHHHHHHHhh-h
Confidence 4455666665542 12333 2333 4446788999999998876543 1223 44555555433211 0
Q ss_pred ccCCCCChhhHHHHhhhccccchhhcccCCCC-Cccc-cccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 245 ~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
.-+....++-|.+.|. |...++.. |.+. --++-.+ +--..++|+.+-.++..+.-=.--|.+-|
T Consensus 332 e~gSreHlKiAqqffq--------lVG~Sa~ecDTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQ--------LVGESALECDTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hcCcHHHHHHHHHHHH--------HhcccccccccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 0012222445666663 54443433 4332 1122222 22333445554444444333222233333
Q ss_pred chhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcC
Q 004743 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA-VGRMAMSMG 401 (732)
Q Consensus 323 ~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~-LI~~~~~~g 401 (732)
| +-.+++..|...+|+++|-......+ .|..+|.+ |.++|.+++
T Consensus 398 N----------------------------------~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 398 N----------------------------------LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK 442 (557)
T ss_pred H----------------------------------HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC
Confidence 2 77899999999999999977654443 35566654 567888999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (732)
.++.|++++-.|.. ..+..+.--+| +-|-+++++--|-+.|++++.. .|+..-|
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 99999998865542 23344444444 4677889998888888888754 4555554
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.84 E-value=1.5 Score=51.73 Aligned_cols=285 Identities=10% Similarity=0.028 Sum_probs=154.3
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~ 241 (732)
.|+.++|.+++.|.+.+- +.+...|-+|=..|-..||...++..+ |....+.|. ..-|-.+-....
T Consensus 152 rg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~---- 218 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSE---- 218 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHH----
Confidence 399999999999986542 233478999999999999999998766 443344443 344444444444
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc-ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~-tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
+.|.+++|.-.|. +-+... -.+.- .|+- ...|-+.|+...|..-|.+|.+.-- |...
T Consensus 219 ------~~~~i~qA~~cy~------rAI~~~--p~n~~~~~er-------s~L~~~~G~~~~Am~~f~~l~~~~p-~~d~ 276 (895)
T KOG2076|consen 219 ------QLGNINQARYCYS------RAIQAN--PSNWELIYER-------SSLYQKTGDLKRAMETFLQLLQLDP-PVDI 276 (895)
T ss_pred ------hcccHHHHHHHHH------HHHhcC--CcchHHHHHH-------HHHHHHhChHHHHHHHHHHHHhhCC-chhH
Confidence 6677777777764 111111 00100 0110 1115556777777777766665421 1111
Q ss_pred ccc--------------------hhhhhhccc------------------------cccCCCchhhhccCCCCC------
Q 004743 321 MKL--------------------NSQLLDGRS------------------------NLERGPDDQSRKKDWSID------ 350 (732)
Q Consensus 321 ty~--------------------~~~li~~~~------------------------~~a~~~~~~m~~~g~~pd------ 350 (732)
-.. ...+..++. +.+......+...-.++|
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 000 000000000 111112222222111111
Q ss_pred ----------------hhhhHHH---HHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004743 351 ----------------NQDADEI---RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDM 409 (732)
Q Consensus 351 ----------------~~tyn~~---lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l 409 (732)
..+|+.- ++-++.+....+....+........+ .-++..|.-+.++|...|++.+|..+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111111 12223333333333344444444442 23445566777788888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 410 ~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
|..+...-..-+...|-.+=.+|-..|..+.|.+.|+..+.. .|+ ...--+|-..+-+.|+.++|.+.+..|.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 888776654455667777777777888888888888877654 233 2223344455677788888888888775
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.78 E-value=0.61 Score=46.73 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=97.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g 436 (732)
|--+|...|+...|.+-+++-.+.. +-+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+ -...|.-=..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4468889999999999999988764 335678999999999999999999999886654 344 233444445578999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.++|+..|+.....--.|. ..||.-+--+..+.|+.+.|...|++-.+.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 99999999999887643332 346666666678899999999999988776
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.68 E-value=1.5 Score=50.02 Aligned_cols=297 Identities=12% Similarity=0.058 Sum_probs=167.9
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++..+...+|.+..+.---+...-+|. ..|..+-+.|-.+|+++.|..+|+...+-..+- +.-...+=-.|+....
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMEL 436 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHH
Confidence 34566777788888755322222223444 678888999999999999999999988655432 2222222223332221
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccC------CCCCc--------cccccccccccccccccccCChhHHHHHH
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDNN--------GQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~------g~~d~--------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (732)
+..+++.|..++.-- ..+.... |-.++ ..|.-.++- .-..|-++.-..++
T Consensus 437 ------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vY 500 (835)
T KOG2047|consen 437 ------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVY 500 (835)
T ss_pred ------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHH
Confidence 445567777766311 0011110 10111 124334444 44456777888888
Q ss_pred HHHHHcCCCCCccccchhhhhhc--cccccCCCchhhhccCCC----CCh-hhhHHHHHHHHHhcc--CHHHHHHHHHHH
Q 004743 308 NEKENLGQFSNGHMKLNSQLLDG--RSNLERGPDDQSRKKDWS----IDN-QDADEIRLSEDAKKY--AFQRGFEIYEKM 378 (732)
Q Consensus 308 ~eM~~~gi~Pd~~ty~~~~li~~--~~~~a~~~~~~m~~~g~~----pd~-~tyn~~lI~~~~k~g--~~~~A~~lf~~M 378 (732)
+.+....+.-..+..|.+.+++- |..++.+++ .+|+. |++ ..||+.|...-.+.| .+++|.++|++-
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~Y----ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY----ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH----HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888776544444442222221 112222211 23332 344 346664544444444 789999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004743 379 CLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (732)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (732)
.+ |++|.-.-+--|+-+-. +.|....|..++++.- .++++. ...||..|.-....=-+-...++|++.++. -
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 88 87775543333332222 3688888999998843 345554 457888877555554455566777776655 5
Q ss_pred CCHHHHHHHHHHH---HhcCChHHHHHHHHHHH
Q 004743 455 PEEPELEALLRVS---VEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 455 pd~~ty~~Li~~~---~~~g~~~~A~~l~~~M~ 484 (732)
||...-..-|+.- ++-|.+++|..++..-.
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 6655544444332 67788888888876543
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=0.5 Score=48.27 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=85.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
..+.|..+++-|.+.+++|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|-.+ ..|+.-+-|-...++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 34456667888999999998643 66777766666654 55678899999998764 778888888888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~l~~~M~~~ 486 (732)
|++++|..++++...+.-. +..|..-+|-.-...|.. +-..+.+.+++..
T Consensus 221 ~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999988876532 344444444444444543 4455666666554
No 102
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.79 Score=48.06 Aligned_cols=221 Identities=7% Similarity=-0.094 Sum_probs=150.8
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAA 240 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~~~~~~~ 240 (732)
+.+-..+|++-|..-..+ .|-+.||--|-.+|.+-..+..|+.+|.+-.+. .|-.+||-.=+ +.+-
T Consensus 235 rLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e--- 301 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE--- 301 (478)
T ss_pred HhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH---
Confidence 456777888888775332 233368888999999999999999999987753 46666664322 2222
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..++.++|.+++. +..+. .-.|+...-.+-.+ |--.++.+-|+..+..+.+.|+....
T Consensus 302 -------am~~~~~a~~lYk-------~vlk~-~~~nvEaiAcia~~------yfY~~~PE~AlryYRRiLqmG~~spe- 359 (478)
T KOG1129|consen 302 -------AMEQQEDALQLYK-------LVLKL-HPINVEAIACIAVG------YFYDNNPEMALRYYRRILQMGAQSPE- 359 (478)
T ss_pred -------HHHhHHHHHHHHH-------HHHhc-CCccceeeeeeeec------cccCCChHHHHHHHHHHHHhcCCChH-
Confidence 3467888888885 33332 11145445555566 78889999999999999999864222
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAM 398 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~ty~~LI~~~~ 398 (732)
-|++ +=-+|.-.+++|-++--|+.-...--.|++ ..|-.|=....
T Consensus 360 --------------------------------Lf~N-igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 360 --------------------------------LFCN-IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred --------------------------------HHhh-HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 2223 323344467888888888877654444443 23545555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..|++..|.+.|+-..... .-+...||.|----.+.|++++|..++......
T Consensus 407 ~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred eccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7899999999998766542 234567888777788999999999999887654
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.53 E-value=1.6 Score=44.27 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=60.2
Q ss_pred cCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhH
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSY 425 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~ty 425 (732)
|+.++|.+.|++..... |+. ..+ -.+-..|.+.|+.++|...+++..... -......+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 55667777777766542 221 111 134566788999999999999987652 11235678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..+..++.+.|+.++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88999999999999999999888754
No 104
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.50 E-value=0.14 Score=47.11 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
|+.++.++|-++++.|+++....+++..= |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45677777777777777777777765432 33222100 0000 1122345677777777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcc-CCCChhHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFNS 504 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~~-~~~~p~t~~~I~~~~~~ 504 (732)
+|+..|++..|+++++...+.- +.++..+|..+..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777766552 22333367666666543
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.47 E-value=2.1 Score=51.77 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=129.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcccc
Q 004743 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265 (732)
Q Consensus 187 ~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~ 265 (732)
.+.+...|-.||..+-..+++++|.++.++-.+. .-.+...-|..+| +. ..++..++.-+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l--~~----------q~~~~~~~~lv------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGIL--SL----------SRRPLNDSNLL------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHH--HH----------hhcchhhhhhh-------
Confidence 3456678999999999999999999999966543 2223333333332 22 11222222211
Q ss_pred chhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc
Q 004743 266 STELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (732)
Q Consensus 266 s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~ 345 (732)
.+++. .....++..+.-+...|...+-
T Consensus 88 -----------------~~l~~------~~~~~~~~~ve~~~~~i~~~~~------------------------------ 114 (906)
T PRK14720 88 -----------------NLIDS------FSQNLKWAIVEHICDKILLYGE------------------------------ 114 (906)
T ss_pred -----------------hhhhh------cccccchhHHHHHHHHHHhhhh------------------------------
Confidence 12222 3344444444444444433211
Q ss_pred CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
+...+.+ +-.+|-+.|+.++|..+++++.+.. +-|..+.|-+-..|+.. ++++|.+++..-...- .+..-|
T Consensus 115 ----~k~Al~~-LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~--i~~kq~ 185 (906)
T PRK14720 115 ----NKLALRT-LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF--IKKKQY 185 (906)
T ss_pred ----hhHHHHH-HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--Hhhhcc
Confidence 1111223 6788889999999999999999877 56788899999999988 9999999888765541 122222
Q ss_pred HHHHH---HHHhc--CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 426 GPALS---VFCNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~---~~~~~--g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.. -+|.. .+++.=..+.+.+... |..--+.++-.|-..|-...+++++..+|+.+.+.
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 22222 11111 2233333333333322 33344455666667778888899999999998876
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.40 E-value=0.35 Score=42.83 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEAL 463 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~~L 463 (732)
+-.+...+.+.|+.++|.+.|..+.... |+ ...+..+-..+.+.|+++.|...|+.+....- ......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444555555666666555554431 21 12333355555555666666666665554310 0112334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-.++.+.|+.++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555666666666666666554
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.38 E-value=0.45 Score=54.71 Aligned_cols=208 Identities=8% Similarity=-0.032 Sum_probs=146.8
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.+.+.|-..+|..+|+.+ ..|--+|.+|+..|+-..|..+..+-.+ -+||+..|..|.+...
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 445777888999999999 8999999999999999999998887776 4789999988888776
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC-CCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-i~P 317 (732)
..--+++|.+++. ..+.+. -..++-+ ....+++.++.+.|+.-.+.. +.
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq- 518 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQ- 518 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccc-
Confidence 3344788888885 111110 0001111 233678888888887543321 11
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRM 396 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~ 396 (732)
..+|-. +=.+.-+.++++.|.+-|..-.. ..|| .-.||.+-.+
T Consensus 519 ---------------------------------~~~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 519 ---------------------------------LGTWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred ---------------------------------hhHHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 112222 22344466788888888876553 2454 5679999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
|.+.|+-.+|+..+.+-.+.. .-+...|-.-+....+.|.+++|++.+..|...
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999988776 444555655666678899999999998887643
No 108
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=2.7 Score=46.55 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=89.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChh--hHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRLR--SYGPALSVF 432 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd~~--ty~~lI~~~ 432 (732)
.+.-|.+++++++..|++-+.+ ++-..-.||-.-..+...++++.|.+.|+..... ++..+.. .--++|..-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 3445667999999999998876 4545678898999999999999999999876643 1111111 111222211
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
=.+++..|.+++....+.. .-....|.+|-..-.+.|++++|.++|++-..-
T Consensus 515 -wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2389999999998887653 224567889999999999999999999986543
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.64 Score=48.09 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=105.4
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhh
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l 327 (732)
+.|+.+.|.+-|. +...-+|..+.+.||.-+.- | +.++.+.|+++..|+.++|++- ..-++.|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH------y-~~~qyasALk~iSEIieRG~r~-HPElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH------Y-SSRQYASALKHISEIIERGIRQ-HPELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH------H-hhhhHHHHHHHHHHHHHhhhhc-CCccCccce
Confidence 8899999999995 44444477788889887655 4 6789999999999999999642 122221111
Q ss_pred hhccccccCCCchhhhccCCCCChhhh-HHHHH-------HHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004743 328 LDGRSNLERGPDDQSRKKDWSIDNQDA-DEIRL-------SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAM 398 (732)
Q Consensus 328 i~~~~~~a~~~~~~m~~~g~~pd~~ty-n~~lI-------~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~ 398 (732)
.+|-- ++. .-|..+. -+.++ .-+.+.|+.+.|.+-+-.|.-+ .-..|.+|...+.-.-.
T Consensus 221 tegiD--vrs----------vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~ 288 (459)
T KOG4340|consen 221 TEGID--VRS----------VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM 288 (459)
T ss_pred eccCc--hhc----------ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc
Confidence 11111 000 0011110 01122 2345677888888888888643 33457777665432222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
.+++-+..+-+.-+....- --..||..++-.||++.-++.|-.++.+-
T Consensus 289 -~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 -DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred -cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3444444444444444322 23578999999999999999999888763
No 110
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=3.5 Score=45.40 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=106.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-+-|+-.++-++|...|+.-..-+ +-....|+-|=.-|....+...|.+-++.-.+- .+-|-+.|-.|=++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 4467778889999999999887654 234577888888999999999999999987766 45678899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..-|+-.|++..+.. .-|...|.+|=++|.+.++.++|.+.|..-..-
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999877543 456889999999999999999999999988765
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.17 E-value=0.63 Score=41.16 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~~ 431 (732)
+...+.+.|++++|.+.|+++....- ......+..+...+.+.|++++|.+.|+...... |+ ...+..+-..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHH
Confidence 56677889999999999999987531 1123466678999999999999999999988652 33 3456667778
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 004743 432 FCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~g 452 (732)
+.+.|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999998774
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.08 E-value=0.23 Score=56.63 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
.|..|.++|+++.|.++-.+. .|-......|-+-..-+-+.|++.+|++++-.+ | .|+ -.|.+|-+.|.
T Consensus 797 ai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~ 865 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGL 865 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCc
Confidence 444555555555555443332 222233333444444444455555555444221 1 122 24555556665
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+...++.+.-. |+ ..|--.+-.-|-..|++..|..-|-+-.
T Consensus 866 ~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 866 DDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred chHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 555555544321 22 1233444455566777777777665543
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.95 Score=53.80 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccc
Q 004743 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (732)
Q Consensus 205 g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~L 284 (732)
+.+++|.++-++-. .+..|+.|-.+-. ..|.+.+|++-|- .-.|...|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 56666666554432 2456788877777 6788888888873 22266668888
Q ss_pred cccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh
Q 004743 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (732)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (732)
|+. ..+.|.+++..+.+..-+++.-.|.+-+- ||-+|++
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e-----------------------------------Li~AyAk 1178 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE-----------------------------------LIFAYAK 1178 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH-----------------------------------HHHHHHH
Confidence 898 99999999999888666665555655443 5556666
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------cCCCCChhh
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS--------------------LGINPRLRS 424 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~--------------------~g~~pd~~t 424 (732)
.+++.+-++++. -||..-.-.+=+-|...|.++.|.-++...-. ..-.-+..|
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 665544433321 24444444444444444444444433322110 001124556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
|--+-.+|...+.+..| .|-...+........-||.-|-..|.+++...+++.
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 66666666655555433 233333445566677788888888888888777664
No 114
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.83 E-value=0.25 Score=45.32 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 004743 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-HGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-~gv~pd~~ty~~Li~~~~~~ 470 (732)
.+.|+..+..+++.+|+.+|++..|+++.+...+ -++..+..+|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4779999999999999999999999999998765 47888889999998866443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.81 E-value=1 Score=45.88 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=97.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
......+.|++..|...|.+...- -++|..+||.+=-+|.+.|+.++|..-|.+-.+.-. -+...+|.|--.|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCC
Confidence 566777889999999999998764 378999999999999999999999999988766522 234556667777888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
.+.|..++.+....+-. |...-.-|.-+....|++++|..+-..-
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999998877643 4455556666778899999998886553
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.59 Score=47.75 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=101.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~ 435 (732)
.-|++.|++++|++.... |-.......| ...+.+..++|-|.+.++.|..- -+..|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~----~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL----GENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhc----cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 568899999999998876 2222333333 33445777899999999999876 355666655555554 4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhH-HHHHHHHHhchHHHHh
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARL 510 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t-~~~I~~~~~~~~~~~a 510 (732)
+.+..|+-+|++|-++ ..|+..+.+-+..++...|++++|..++++...+.-. .|+| .+.|......|+..++
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 6899999999999864 4799999999999999999999999999998877222 2443 5556655555554333
No 117
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.63 E-value=2.7 Score=48.30 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=99.4
Q ss_pred cCCCCChhhhHHHHHHHHHhc-----cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHH
Q 004743 345 KDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMV 410 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g--------~~~~A~~l~ 410 (732)
.+...|...|.. .+.+.... +..+.|.++|++..+. .|| ...|..+.-++.... ++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344456666766 66554432 2377999999998876 455 344555444333221 123334444
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 004743 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (732)
Q Consensus 411 ~~M~~~-g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~ 489 (732)
...... ....+...|.++--.+...|+.++|...+++..+.+ |+...|..+-..|...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 233345677776555566799999999999998876 78889999999999999999999999987766 6
Q ss_pred CChhHHHHHHH
Q 004743 490 VSPSTADVIAK 500 (732)
Q Consensus 490 ~~p~t~~~I~~ 500 (732)
|...||-.+..
T Consensus 484 P~~pt~~~~~~ 494 (517)
T PRK10153 484 PGENTLYWIEN 494 (517)
T ss_pred CCCchHHHHHh
Confidence 66667755443
No 118
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.57 E-value=0.37 Score=49.46 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g----------------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
+.++=....++.|++.|+.-|+.+|+.||+.+=+.. +-+-+..++++|+.+|+.||-.+--.||
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344444455556666666666666666665554432 2234778999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHHh
Q 004743 465 RVSVEAGKG-DRVYYLLHKLRT 485 (732)
Q Consensus 465 ~~~~~~g~~-~~A~~l~~~M~~ 485 (732)
+++.+.+.. .+..+++--|.+
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhccccccHHHHHHHHHhhhh
Confidence 999988864 355566555543
No 119
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.52 E-value=8.6 Score=44.12 Aligned_cols=292 Identities=10% Similarity=0.010 Sum_probs=170.2
Q ss_pred hhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004743 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (732)
Q Consensus 157 ~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~-tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~ 235 (732)
++.+.+.+...+|.+.+..-+.. .-|-+ .--+--+-+.+.+++++|..+|..+.... ||.+-|+-.+..
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 33455666666666655543211 11112 22445567788999999999999999764 888888877766
Q ss_pred HHhcccCCcccCCCCChhhHH-HHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC
Q 004743 236 CSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~-~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (732)
+.. +.-+.-++. .+|...+ +.-... .++-...-+. .-...-.+...+++..+.++|
T Consensus 262 ~lg---------k~~d~~~~lk~ly~~ls---~~y~r~-e~p~Rlplsv----------l~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 262 ALG---------KIKDMLEALKALYAILS---EKYPRH-ECPRRLPLSV----------LNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHH---------HHhhhHHHHHHHHHHHh---hcCccc-ccchhccHHH----------hCcchhHHHHHHHHHHHhhcC
Confidence 651 111222333 4443110 111110 1110000111 111223355566777788888
Q ss_pred CC---CCccccc--------hhhhhhccc--cccCCCchhhhccCC-CCChhhhHH-HHHHHHHhccCHHHHHHHHHHHH
Q 004743 315 QF---SNGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDW-SIDNQDADE-IRLSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 315 i~---Pd~~ty~--------~~~li~~~~--~~a~~~~~~m~~~g~-~pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~M~ 379 (732)
++ +|+.++. ...++..|. ......|...-...+ .|....|.. .++..|-+.|+++.|.+.++.-.
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 54 4555554 111111221 111111111111112 445555544 35678889999999999999877
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 380 LDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 380 ~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
.. .|+.+ -|-+=.+.++.+|++++|..++++-.+... ||...-+-......+++++++|.++.......|. +..
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 54 56543 455556888999999999999999887743 7777666778888899999999999998888775 333
Q ss_pred HHHHHH----------HHHHhcCChHHHHHHHHHHHhc
Q 004743 459 ELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 459 ty~~Li----------~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-+-+ .+|.+.|++.+|++=|+.+...
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 332222 3456677777777766665443
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.19 E-value=3.9 Score=50.51 Aligned_cols=271 Identities=8% Similarity=-0.011 Sum_probs=156.9
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CC--HHHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IK-LG--QYHYNVLLYL 235 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G--i~-pd--~~tyn~LL~~ 235 (732)
..++.++|...+++..+. .+.. ..+ -...++.+-..+...|++++|...+.+..... .. +. ..++..+-..
T Consensus 464 ~~g~~~~A~~~~~~al~~--~~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 464 NDGDPEEAERLAELALAE--LPLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred hCCCHHHHHHHHHHHHhc--CCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566788888888876442 1111 011 12345566667788999999999999887421 11 11 1233333334
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCC----ccccccccccccccccccccCChhHHHHHHHHHH
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
+. ..|++++|...+... .+.....+..+ ...+..+-.. +...|++++|...+.+..
T Consensus 541 ~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 541 LF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKGL 600 (903)
T ss_pred HH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHhH
Confidence 44 678999998887411 11111112111 1123333333 556799999999888765
Q ss_pred HcCC--CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCCC
Q 004743 312 NLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (732)
Q Consensus 312 ~~gi--~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p 385 (732)
...- .|.. ....+.. +-..+...|+.++|.+.+++.... +...
T Consensus 601 ~~~~~~~~~~------------------------------~~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 601 EVLSNYQPQQ------------------------------QLQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HhhhccCchH------------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 4311 0110 0111222 445667789999999998887542 1111
Q ss_pred CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 004743 386 NEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE 456 (732)
Q Consensus 386 d~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd 456 (732)
..... ...+..+...|+.+.|..++............ ..+..+-.++...|+.++|..++++.... |..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11010 11234455689999999998775432111111 11344566788889999999999887653 43332
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 457 -EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 457 -~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..++..+-.++.+.|+.++|...|.+..+.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234556666778999999999999988765
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.17 E-value=1.3 Score=44.02 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~-~~~g~--~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
.|.. +-..|...|++++|.+.|++..... +-|...+..+-.++ ...|+ .++|.+++++..+..- -+...+..+-
T Consensus 75 ~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA 151 (198)
T PRK10370 75 QWAL-LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLA 151 (198)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444 7778889999999999999888764 34677888888764 67777 5999999999887642 2567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..+.+.|++++|...|+.+.+.. .|+..-+ .+|..
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence 88999999999999999998664 4555444 34443
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.02 E-value=10 Score=46.88 Aligned_cols=276 Identities=14% Similarity=0.017 Sum_probs=151.6
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~--tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~ 235 (732)
..++.++|...++.....-...+....|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4456777777777654321111111112211 1112223456789999999999998753111121 122333333
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
+. ..|++++|...+... .+.....|-. -..+++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 678999998888411 0111111111 11223333334 67789999999988876542
Q ss_pred CC---CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCC--C
Q 004743 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (732)
Q Consensus 314 gi---~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p--d 386 (732)
.- .++... ....+.. +-..+...|++++|...+++.... ...+ .
T Consensus 561 ~~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLPM----------------------------HEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhccccccH----------------------------HHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 000000 0111222 334456679999999999876542 1112 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty-----~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--- 457 (732)
...+..+...+...|+.++|.+.+.+.....-. .....+ ...+..+...|+.+.|.+++............
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555666788899999999999887543110 111111 11234456689999999998775532211111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+..+-.++...|+.++|..++.+....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345666778899999999999887653
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.01 E-value=0.11 Score=43.74 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHH
Q 004743 366 YAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~ 443 (732)
|+++.|..+|+++.+.... |+...+-.+..+|.+.|++++|..+++. . ...|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666666666654321 1233333356666666666666666655 1 111221 111222344555566666666
Q ss_pred HHHH
Q 004743 444 VEEH 447 (732)
Q Consensus 444 l~~~ 447 (732)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.87 E-value=9.1 Score=45.90 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=74.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~ 433 (732)
|-+.|.-.|+++.+..+...+...-..- -...|=-+-++|-..|++++|+..|-+ ..+..||-.++ --|-..|.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~--s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME--SLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HHccCCCCccccccchhHHHH
Confidence 5677777788888888877776543111 112345566777778888888887754 33445554333 34667778
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcC----ChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLR-VSVEAG----KGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~-~~~~~g----~~~~A~~l~~~M~~~ 486 (732)
+.|+++.|...|+...+. .||...-..++. .|+..+ ..++|..++.+..+.
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 888888888877777654 354443333333 233332 345566555554443
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.85 E-value=1 Score=49.22 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=75.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+...|++++|.++|++..+.. +-+...|..+-.+|.+.|++++|...+++..... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34557788999999998888754 3456778888888888999999999988877652 224566777777888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
+|...|++..+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999988888764 46655555554
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.81 E-value=2.1 Score=41.29 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALL 464 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li 464 (732)
..|..+-..+...|++++|...|++..+..-.+. ...|..+-..+.+.|+.++|...+.+..+. .|+ ...+..+-
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555566666667776666666654432221 245555666666667777777666666543 232 33344444
Q ss_pred HHHHhcCC--------------hHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 004743 465 RVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 465 ~~~~~~g~--------------~~~A~~l~~~M~~~~~~~~p~t~~~I~~~ 501 (732)
..|...|+ +++|.+++++.... .|+.+..+..|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~ 160 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNW 160 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHH
Confidence 44444444 45566666665543 34444344444
No 127
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.75 E-value=16 Score=42.08 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=122.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g 436 (732)
-+..-..+.++++|..+|.+-.. ..|.+..|.--+...--.+..++|.+++++..+. .|+.. .|-.+=..+-..+
T Consensus 624 avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 56667778888999999988765 4577777777666666778889999998876654 35543 3333334455556
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHHHHhchHHHHhccc
Q 004743 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLGKK 513 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a~~~ 513 (732)
+++.|.+.|..=.. .-|+ ...|-.|-+.=-+.|.+-+|..+|++-+-+ .|... .|-. |..-.+.|...+|.
T Consensus 700 ~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~-- 773 (913)
T KOG0495|consen 700 NIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAE-- 773 (913)
T ss_pred HHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHH--
Confidence 77777666643221 2244 445666666667788999999999988776 55555 4533 77666766655554
Q ss_pred cchhHHHHHHH---hhcCCCccccccCCCceeEEEEeeecCCCccCcccc
Q 004743 514 KWNESLIKDTM---ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGE 560 (732)
Q Consensus 514 ~~~~~~v~ea~---~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~ 560 (732)
..+..|+ .++|-+|-+.+|.--.|..-|- +++.--.|..--+
T Consensus 774 ----~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~dph 818 (913)
T KOG0495|consen 774 ----LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHDPH 818 (913)
T ss_pred ----HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCCch
Confidence 3444444 4678889888888777777554 4443345554433
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.73 E-value=0.14 Score=43.01 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 004743 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (732)
.|+++.|..+++++.+..- .|+...+-.+-.+|.+.|+.++|.++++. .. +.|.. ...-.+-.+|.+.|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987743 22444455578899999999999999988 22 22333 33334567788999999999
Q ss_pred HHHHH
Q 004743 478 YLLHK 482 (732)
Q Consensus 478 ~l~~~ 482 (732)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.70 E-value=2.4 Score=50.40 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=100.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
..+.|+.++|..+++...+. .||-... -..+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 66789999999999877664 3444333 2447788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
..++..... +-+....+.+-.++.+.|+.++|..+|++.... .|+ ..++..+=.++-+.|+.++|...|+...+.-
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999988764 335566777888889999999999999998873 344 6677777788889999999999999887542
Q ss_pred CCCCHHHHHHH
Q 004743 453 VYPEEPELEAL 463 (732)
Q Consensus 453 v~pd~~ty~~L 463 (732)
.|...-|+-+
T Consensus 219 -~~~~~~~~~~ 228 (694)
T PRK15179 219 -GDGARKLTRR 228 (694)
T ss_pred -CcchHHHHHH
Confidence 2344444433
No 130
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=15 Score=41.51 Aligned_cols=123 Identities=9% Similarity=0.056 Sum_probs=90.4
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC----ChhhHHHHHHHHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINP----RLRSYGPALSVFC 433 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~p----d~~ty~~lI~~~~ 433 (732)
-|.+.+.++.|.+.|.+-.. +.| |...++=+=-..-..+.+.+|...|..-... .+.+ -.-+++.|=++|.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 46678889999999987654 444 5566665555555678899999999876521 1112 2334566667888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+..++|...|+..+... .-|..+|.++--.|...|+++.|.+.|++-...
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 8999999999999887654 457778888888888999999999999987543
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.65 E-value=2 Score=41.46 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~ 434 (732)
+-..|...|++++|...|++.......++ ...|..+...+.+.|++++|...+.+.... .|+ ...+..+-..|..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 55677888999999999999886543332 467888999999999999999999988764 343 4555556666666
Q ss_pred cCC
Q 004743 435 NGD 437 (732)
Q Consensus 435 ~g~ 437 (732)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 665
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.49 E-value=2.6 Score=50.11 Aligned_cols=124 Identities=8% Similarity=-0.082 Sum_probs=100.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~ 435 (732)
|-......|..++|..+++...+. .| +......+...+.+.+++++|....++.... .|+.. ..+.+=.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 667777889999999999998875 45 4567888899999999999999999987765 46654 444555677788
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|+.++|.++|++....+ .-+..++..+=.++-..|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999843 223778888888889999999999999987654
No 133
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.21 E-value=4 Score=42.96 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHhc-cCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChh-hHHHH
Q 004743 362 DAKK-YAFQRGFEIYEKMCL----DEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLR-SYGPA 428 (732)
Q Consensus 362 ~~k~-g~~~~A~~lf~~M~~----~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-----pd~~-ty~~l 428 (732)
|-.. |++++|.+.|++-.+ .| .+. ..++.-+...+.+.|++++|.++|++....-+. .+.. .|-..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3344 566677766665443 22 111 235667777888899999999999888765332 2232 22334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVSVEAGK---GDRVYYLLHKL 483 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~--gv~pd--~~ty~~Li~~~~~~g~---~~~A~~l~~~M 483 (732)
+-.+...||...|.+.+++.... ++..+ ......||.+| +.|+ +++|..-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHccc
Confidence 44666678898999888887644 22222 33455666664 3444 44444444444
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.19 E-value=2.4 Score=49.07 Aligned_cols=214 Identities=12% Similarity=0.108 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
..+-..+.+.|-...|+.+|++.. -|.-+|.+|+ ..|+.++|..+.. ++..+.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~----------~lg~~~kaeei~~------q~lek~-- 454 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYL----------LLGQHGKAEEINR------QELEKD-- 454 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH----------HhcccchHHHHHH------HHhcCC--
Confidence 345567778889999999998754 4677788888 6777778888775 344422
Q ss_pred CCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhh
Q 004743 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (732)
Q Consensus 275 ~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ty 354 (732)
++..-|..+-+. .-+..-++.|.++++.--.+- .- .+
T Consensus 455 -~d~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r-------------------------------~~ 491 (777)
T KOG1128|consen 455 -PDPRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QR-------------------------------SL 491 (777)
T ss_pred -CcchhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HH-------------------------------hh
Confidence 144447666666 555566677877776443220 00 00
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 004743 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (732)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~ 433 (732)
+. ...+.++++++.+.|+.-.+-. +.-..||=.+=.+..+.+++..|.+.|..... ..|| ...||.+=.+|.
T Consensus 492 ~~----~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 492 AL----LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYI 564 (777)
T ss_pred cc----ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHH
Confidence 01 1123578888888887544321 22334565555556678899999999987664 4566 568999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.|+-.+|+..+.+..+.. .-+...|.--+-...+.|.+++|++.+++|...
T Consensus 565 ~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999999887 445556666666779999999999999887654
No 135
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=2.3 Score=46.86 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=96.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
+..=-..|++..|.++|+.-.+ ..|+...|.+.|+-=.+-..++.|..+++..+-. .|++.+|---...=-++|++
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 3333456889999999998775 4799999999999999999999999999988754 59999998888888889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhccCCCCh
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
..|..+|+...+. .-|...-..|+-++ .++..+++|..+++--.++ -|+.
T Consensus 224 ~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~ 277 (677)
T KOG1915|consen 224 ALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKG 277 (677)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 9999999887653 12333334444444 4556678888888777665 4444
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.02 E-value=1.9 Score=47.23 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
..+...|++++|.++|++..+.. .-+...|..+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45567899999999999988753 2345677777888999999999999999998764 235667888888999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHH
Q 004743 475 RVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
+|...|++.... .+.......
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHH
Confidence 999999998876 555444333
No 137
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.96 E-value=0.59 Score=43.73 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
...++..+...|++++|..+...+... -+-|...|-.+|.+|...|+...|.++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555443 2234445555555555555555555555544
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.89 E-value=3 Score=46.21 Aligned_cols=120 Identities=12% Similarity=0.121 Sum_probs=86.7
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~ 440 (732)
+-..|++++|+..++.+... .+-|..-+....+.+.+.++.++|.+.++.+... .|+ ....-.+=.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34677888888888887654 2445566666677888888888888888887765 455 2333345567888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
|..++++-.... .-|...|..|-.+|...|+..+|..-.-++-.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888888776543 56777888888888888888887777666544
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.83 E-value=0.42 Score=38.07 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.|++++|.++|+.+.... .-+...+-.|..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555555444332 113333334444555555555555555544444
No 140
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.79 E-value=0.38 Score=50.75 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=98.9
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
+|-.+|+. .-+.+.++.|..+|.+-.+.+ ..+| ++...++ +|
T Consensus 3 v~i~~m~~------~~r~~g~~~aR~vF~~a~~~~----~~~~---------------------------~vy~~~A-~~ 44 (280)
T PF05843_consen 3 VWIQYMRF------MRRTEGIEAARKVFKRARKDK----RCTY---------------------------HVYVAYA-LM 44 (280)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHCCC----CS-T---------------------------HHHHHHH-HH
T ss_pred HHHHHHHH------HHHhCChHHHHHHHHHHHcCC----CCCH---------------------------HHHHHHH-HH
Confidence 34455555 666677899999998886432 2222 2222233 44
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcC
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNG 436 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~lI~~~~~~g 436 (732)
. |...++.+.|..+|+...+. +.-+...|..-|+-+.+.++.+.|..+|++.... +.++. ..|...|..=.+.|
T Consensus 45 E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 45 E-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp H-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS
T ss_pred H-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcC
Confidence 3 44456778899999998875 5667888999999999999999999999998765 43333 48999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
+++.+..+.+++.+. .|+......+++
T Consensus 122 dl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 122 DLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp -HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred CHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 999999999998864 455444444443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.72 E-value=3.2 Score=38.77 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-h---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-R---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELE 461 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--~ty~ 461 (732)
..|..++..+ ..++.+.+...++.+.+.. |+. . ..-.+-..+...|++++|...|+......-.|+. ...-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455556655 4889999999999988762 332 2 2222446788899999999999999987733332 2334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 004743 462 ALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 462 ~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.|-..+...|++++|+..++....
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~ 113 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD 113 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC
Confidence 467778899999999999977543
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.72 E-value=3.3 Score=46.43 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhhH-HHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~-M~~~g~~pd~~ty-~~lI~~~~~ 434 (732)
.|+.--|..-++.|..+|.+.++.+..+ .+..++++|.-||. ++.+-|+++|+- |+.. +|.-.| ..-++.+..
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHH
Confidence 5566666667777888888888777666 77777888877764 566777777764 2333 333222 345666667
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-++-..|..+|+..+..++.||. ..|..+|+-=..-|++..+.++-+++...
T Consensus 448 lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77777788888888777665553 57888887777788888777777776554
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.71 E-value=2.5 Score=48.61 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCC
Q 004743 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (732)
Q Consensus 196 ~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~ 275 (732)
-.|.+...+..+..|+.+++.+...... ..-|.-+-.-|+ ..|+++.|.++|. +
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhya----------n~~dfe~ae~lf~-------e------- 790 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYA----------NKGDFEIAEELFT-------E------- 790 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhc----------cchhHHHHHHHHH-------h-------
Confidence 3455666677788888888877765433 233556666666 8899999999994 1
Q ss_pred CCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc---hhhhhhccccccCCCchhhhccCCCCChh
Q 004743 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---NSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~---~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (732)
.--++--|.+ |.++|+|++|.++-.+- .|-....+.|- ...--+|...+|+.++-.+. .||.
T Consensus 791 --~~~~~dai~m------y~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~- 855 (1636)
T KOG3616|consen 791 --ADLFKDAIDM------YGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK- 855 (1636)
T ss_pred --cchhHHHHHH------HhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-
Confidence 1124555777 99999999999886544 33333333442 00001111233333332221 1332
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|..|-+.|..++.+++.++-.-.- -..|---+-.-|-..|++..|+.-|-+-. -|-+.+++|
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmy 918 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMY 918 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHh
Confidence 6777888888777777776532111 11344455566677888888877764322 256777788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
-.++.+++|.++-.. .|- .|..-- +.-.+++.=--+.|.+++++
T Consensus 919 k~s~lw~dayriakt---egg-~n~~k~--v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKT---EGG-ANAEKH--VAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred hhhhhHHHHHHHHhc---ccc-ccHHHH--HHHHHHHhhCcHHHHHHHHh
Confidence 888888888776543 221 122222 22223444344667777765
No 144
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.68 E-value=23 Score=40.81 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
..|++|-+-|.+.|+++.|..+|++....- .++.-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 689999999999999999999999987653 356678888888883
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=92.68 E-value=2.1 Score=41.18 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
+...+...|++++|...|++.......| ...+|..+-..+...|+.++|.+.++....
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445566666666666654432111 123555555666666666666666655543
No 146
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.63 E-value=0.45 Score=44.57 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=51.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t 424 (732)
++..+...|++++|.++.+.+.... +-|+..|-.+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 6778888999999999999998864 56899999999999999999999999998854 388888654
No 147
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.48 E-value=0.67 Score=47.64 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=67.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----------------~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+.++-...-++.|++.|+.-|..+|+.||+.+=+.. +-+-+.+++++|...|+.||..+-..||
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 567777788899999999999999999999765432 2245889999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHH
Q 004743 430 SVFCNNGDV-DKACSVEEHML 449 (732)
Q Consensus 430 ~~~~~~g~~-~~A~~l~~~M~ 449 (732)
++|.+.+.. .+.+++.--|.
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999998853 44445544454
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.48 E-value=5.6 Score=41.41 Aligned_cols=270 Identities=11% Similarity=0.018 Sum_probs=146.8
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHh
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV--LLYLCSS 238 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~--LL~~~~~ 238 (732)
.+..+..+|.+++..--++.. .+....+.|=.+|-...++..|-..|+++-.. -|...-|.. --+.|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY-- 89 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY-- 89 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH--
Confidence 355677788877776533321 13366777778888888888888888887643 343333321 11111
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
+.+...+|+.+.. .|.+...+. -.+-.-+-| .-+.+++-.+..+.++....|-
T Consensus 90 ---------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAI--------kYse~Dl~g~rsLveQlp~en~-- 143 (459)
T KOG4340|consen 90 ---------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAI--------KYSEGDLPGSRSLVEQLPSENE-- 143 (459)
T ss_pred ---------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHH--------hcccccCcchHHHHHhccCCCc--
Confidence 3445667777664 121110000 000011111 1234445555555544432210
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRM 396 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~ 396 (732)
..+.++ .-....+.|+.+.|.+-|+...+ .|..| ...||.-+ +
T Consensus 144 ---------------------------------Ad~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-a 187 (459)
T KOG4340|consen 144 ---------------------------------ADGQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-A 187 (459)
T ss_pred ---------------------------------cchhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-H
Confidence 001111 11223578999999999988776 46655 56788666 4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-------------CChhh--------HHHHHHH-------HHhcCChHHHHHHHHHH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSV-------FCNNGDVDKACSVEEHM 448 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~-------------pd~~t--------y~~lI~~-------~~~~g~~~~A~~l~~~M 448 (732)
..+.|+.+.|++...++.+.|++ ||+++ -+.++.+ +.+.|+.+.|.+-+-+|
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 45678899999999999888754 33322 2234433 34568889999988888
Q ss_pred HHC-CCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHhccCCCChhHH-HHHHHHHhchHH
Q 004743 449 LEH-GVYPEEPELEA--LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSKEA 507 (732)
Q Consensus 449 ~~~-gv~pd~~ty~~--Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~-~~I~~~~~~~~~ 507 (732)
.-+ .-..|.+|..- |.++=.+-+.--+-+.++-++ . .++++|+ +++.-+|++.-.
T Consensus 268 PPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~--n--PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ--N--PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred CCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc--C--CCChHHHHHHHHHHhhhHHH
Confidence 532 33456666653 333323233322223333222 2 4555565 557777877554
No 149
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=8.7 Score=43.66 Aligned_cols=218 Identities=11% Similarity=0.131 Sum_probs=121.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|.+.-+.+...+ ||..+-- -.=+-+..+.+++++|+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~--pdd~~a~--------------------------------~cKvValIq~~ky~~ALk 67 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV--PDDEDAI--------------------------------RCKVVALIQLDKYEDALK 67 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC--CCcHhhH--------------------------------hhhHhhhhhhhHHHHHHH
Confidence 778899999999888887665 5543321 012234556778888886
Q ss_pred HHHHHHhCCCCCCHHHHHH--HHHHHH--hcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTA--VGRMAM--SMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~--LI~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
+.+.=. -.-+++. +=++|| +.+..|+|...++ |+.++.. +-..=-..+-+.|++++|+.+|+++
T Consensus 68 ~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 68 LIKKNG------ALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HHHhcc------hhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554321 1123333 356777 5889999999887 4444443 3333345577889999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCChhHHHH-HHHHHh---chHHHHhccccchhHHHHHH
Q 004743 449 LEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFN---SKEAARLGKKKWNESLIKDT 523 (732)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~---~~~~~~a~~~~~~~~~v~ea 523 (732)
.+++.. .|...+.+-+-. +-.-.+- +++.... ++.++|.. ....|. .++..+|. +.+..+
T Consensus 137 ~kn~~d----d~d~~~r~nl~a~~a~l~~~-~~q~v~~----v~e~syel~yN~Ac~~i~~gky~qA~------elL~kA 201 (652)
T KOG2376|consen 137 AKNNSD----DQDEERRANLLAVAAALQVQ-LLQSVPE----VPEDSYELLYNTACILIENGKYNQAI------ELLEKA 201 (652)
T ss_pred HhcCCc----hHHHHHHHHHHHHHHhhhHH-HHHhccC----CCcchHHHHHHHHHHHHhcccHHHHH------HHHHHH
Confidence 876532 233333222111 1111111 2222211 22336655 333333 33333332 344444
Q ss_pred HhhcCCCccccccCCCceeEEEEeeecCCCccCccccccccccCCHHHHHHHHHHHH---HHH--HhhccchhHHHHHHH
Q 004743 524 MENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVA---SIA--IKRERNSSFQKFQKW 598 (732)
Q Consensus 524 ~~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~---~~a--~~~~~~~~~~~F~~~ 598 (732)
+. .|...|..-+-.+||.+.=.+.|. .++ +.|.+.++.+.+...
T Consensus 202 ~~-------------------------------~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 202 LR-------------------------------ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HH-------------------------------HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33 355666555555666665555552 333 347777888888887
Q ss_pred Hhhc
Q 004743 599 LDYY 602 (732)
Q Consensus 599 l~~~ 602 (732)
+...
T Consensus 251 i~~~ 254 (652)
T KOG2376|consen 251 IKRN 254 (652)
T ss_pred HHhc
Confidence 7764
No 150
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.60 E-value=1.8 Score=46.51 Aligned_cols=110 Identities=9% Similarity=-0.013 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
+.+. .|.-+...|+...|.++..+.+ .||..-|-..|++|+..++|++-.++-.. .- ..+-|-+.+.+|
T Consensus 179 Sl~~-Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLND-TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEAC 247 (319)
T ss_pred CHHH-HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHH
Confidence 3344 5566677888888888876664 47888899999999999999887775432 22 348899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
.+.|+..+|..+...+ ++..-+..|.+.|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999988887762 2366677888899988887764443
No 151
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.52 E-value=4.2 Score=44.60 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALS 430 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty-~~lI~ 430 (732)
.|-. .|+.--+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|.++|+-=... -||.-.| +--+.
T Consensus 399 v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3444 6677777778899999999999998 67999999999998875 6778899999752222 3565444 34666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
.+.+-++-+.|..+|+.-.++ +.-+ ...|..||+-=...|++..|..+=++|... .|..++..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 778889999999999954432 1222 468999999999999999999999999988 777776665
No 152
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.52 E-value=10 Score=34.97 Aligned_cols=121 Identities=9% Similarity=-0.012 Sum_probs=86.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+|..+.+.+.......+++.+...+ ..+...+|.+|..|++... .+..+.+.. .++.+...-++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 8888888899999999999999887 4788899999999998743 344444442 2455556668888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~ 501 (732)
++++..++..+.. |...+..+... ++.+.|.+++.+- -.|+.|..+..+
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 9999999887642 23334444444 7888888887752 245666554433
No 153
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.40 E-value=3 Score=48.81 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=35.6
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ 218 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~ 218 (732)
.|+.+.|++-..-+ +.. ..|..|-..|.+..+++-|.-.+..|.
T Consensus 741 iG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred eccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 46677777776666 223 899999999999999999998888887
No 154
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.34 E-value=3.4 Score=39.63 Aligned_cols=96 Identities=19% Similarity=0.104 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
-...|..+...+...|++++|...|++.....-.| ...+|..+=..|...|+.++|...++...... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34567777888888999999999999887653222 23477778888999999999999999988652 2234455666
Q ss_pred HHHHH-------hcCChHHHHHHHHH
Q 004743 464 LRVSV-------EAGKGDRVYYLLHK 482 (732)
Q Consensus 464 i~~~~-------~~g~~~~A~~l~~~ 482 (732)
...+. +.|+.++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 67777766555543
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.18 E-value=6 Score=35.97 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR------LRSYGPALSV 431 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd------~~ty~~lI~~ 431 (732)
..+-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++..... |+ ...+ +--+
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f--~Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF--LALA 84 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH--HHHH
Confidence 445567888888888888888776654 2345556667778888888888888776541 33 2222 2225
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
+...|+.++|.+.+-.... ++...|.--|..|+.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 6677888888887765542 444466666666653
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.60 E-value=8.9 Score=43.15 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=100.9
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
...+|-.+|+. .-+..-+..|..+|.+..+.+..+- ++..+++
T Consensus 365 ~tLv~~~~mn~------irR~eGlkaaR~iF~kaR~~~r~~h-------------------------------hVfVa~A 407 (656)
T KOG1914|consen 365 LTLVYCQYMNF------IRRAEGLKAARKIFKKAREDKRTRH-------------------------------HVFVAAA 407 (656)
T ss_pred CceehhHHHHH------HHHhhhHHHHHHHHHHHhhccCCcc-------------------------------hhhHHHH
Confidence 66667777777 6677777888888887777765551 3334445
Q ss_pred HHHHHHHhccCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHH
Q 004743 357 IRLSEDAKKYAFQRGFEIYEK-MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFC 433 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~-M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~ 433 (732)
+|..||. ++.+-|.++|+- |+..| -+..--...++-+...++-..|..+|+.....++.|| ...|..+|..=.
T Consensus 408 -~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 408 -LMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred -HHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8887775 556889999985 44433 2234446778888899999999999999998877776 589999999999
Q ss_pred hcCChHHHHHHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLE 450 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (732)
.-|++..+.++-+++..
T Consensus 484 ~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFT 500 (656)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999888764
No 157
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.51 E-value=2.3 Score=43.44 Aligned_cols=98 Identities=10% Similarity=-0.042 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
...+..+....+.|++..|+..|.+...- -++|..+|+-+=.+|- +.|+.+.|..-+. ...+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaald----------q~Gr~~~Ar~ay~-------qAl~ 162 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALD----------QLGRFDEARRAYR-------QALE 162 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHH----------HccChhHHHHHHH-------HHHH
Confidence 45666888888889999999998888753 4677888888877777 7788888877773 1111
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (732)
- -..+...+|.|--. +.-.|+.+.|..++..-...+
T Consensus 163 L-~~~~p~~~nNlgms------~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 163 L-APNEPSIANNLGMS------LLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred h-ccCCchhhhhHHHH------HHHcCCHHHHHHHHHHHHhCC
Confidence 1 00122233333333 445556667766666555443
No 158
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=90.41 E-value=6.4 Score=44.96 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----------
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP----------- 458 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~----------- 458 (732)
.-.+..-+-+...+..|-++|..|-.. .++++.....+++.+|+.+-+...+- .||++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 333333344455566677777766543 35666777777787777777665432 33332
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-|.--=.+|-++|+..+|..+++++..+
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334446777888888888888888666
No 159
>PLN02789 farnesyltranstransferase
Probab=90.31 E-value=29 Score=37.31 Aligned_cols=223 Identities=11% Similarity=0.003 Sum_probs=129.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC-ChhhHHHHhhhccccchhhcccCCC
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDM 275 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~~~~~~~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~~~~g~ 275 (732)
-..+...++.++|+.+++.+... .|+.. .|+.-=..+. +.| .++++++.++ ++... ..
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-np 103 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NP 103 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CC
Confidence 33345667888999999988864 34332 3332222233 334 4567777774 33322 22
Q ss_pred CCccccccccccccccccccccCC--hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhh
Q 004743 276 DNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (732)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~--~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (732)
.+...|+.--.. +.+.|. .+++..+++.|.+.. .. |...
T Consensus 104 knyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----pk-----------------------------Ny~A 144 (320)
T PLN02789 104 KNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----AK-----------------------------NYHA 144 (320)
T ss_pred cchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----cc-----------------------------cHHH
Confidence 233345433222 222232 255666666665542 11 2233
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHcCCCCChhhHH
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---g~~----~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
|+. .--.+.+.|.+++|++.++++.+.+. -|...|+-.--.+.+. |.. +++.+....+... .+-|...|+
T Consensus 145 W~~-R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~ 221 (320)
T PLN02789 145 WSH-RQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWR 221 (320)
T ss_pred HHH-HHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHH
Confidence 444 44555566889999999999998763 3556676665555544 222 4566666555544 233567888
Q ss_pred HHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------------ChHHHHHHHHHH
Q 004743 427 PALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG------------------KGDRVYYLLHKL 483 (732)
Q Consensus 427 ~lI~~~~~~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g------------------~~~~A~~l~~~M 483 (732)
-+-..+... +...+|.+++.+....+ ..+......|++.|+... ..++|..++..+
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 877777773 34456888888876543 345677888999998643 235677777776
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.18 E-value=7.4 Score=40.59 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPE 459 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~t 459 (732)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+.+.- |+ ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 44555555555667777777777777654 2332 234445566777788888888887776531 22 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+-.+...+...|+.++|..+|+++.+. .|...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 333444566778888888888888776 55544
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.10 E-value=14 Score=37.94 Aligned_cols=158 Identities=8% Similarity=0.005 Sum_probs=92.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++.... -|+..... +. . -.+..+|-+.+++++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~--------------------------~a--~-l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQ--------------------------QV--Q-LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHH--------------------------HH--H-HHHHHHHHhcCCHHHHHH
Confidence 55689999999999998874 34331110 00 0 115678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--c---------------CC---HHHHHHHHHHHHHcCCCCCh------hhHH-
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSLGINPRL------RSYG- 426 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~pd~------~ty~- 426 (732)
.|++..+.-..-..+-|.-.+.|.+. . .+ ..+|++.|+++.+. -|+. ...-
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999876433334466666666552 1 12 23555666666554 2332 1111
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 427 -----------~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+-.-|.+.|....|..-++.+.+. +........-.|+.+|.+.|..++|......+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1333456666666666666666654 333334445566666666666666666555443
No 162
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.83 E-value=8.5 Score=40.87 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=99.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhc----cCHHHHHHH
Q 004743 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK----YAFQRGFEI 374 (732)
Q Consensus 299 ~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~----g~~~~A~~l 374 (732)
.+++...+++.|.+.|+.-+..+|- . +.+|...+.. ..+.+|.++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~l-----a--------------------------A~~i~~~~~~~~~~~~~~ra~~i 125 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYL-----A--------------------------ALIILEEEEKEDYDEIIQRAKEI 125 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHH-----H--------------------------HHHHHHhcccccHHHHHHHHHHH
Confidence 3577788999999999988887763 1 1122222111 246789999
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCC---hHHHHH
Q 004743 375 YEKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD---VDKACS 443 (732)
Q Consensus 375 f~~M~~~gi---~pd~~ty~~LI~~~~~~g~~----~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~---~~~A~~ 443 (732)
|+.|++.-. .++-.++.+|+.. ...++ +.++.+++.+...|+..+- .-+-+-|-+++.... +.++.+
T Consensus 126 y~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~ 203 (297)
T PF13170_consen 126 YKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIE 203 (297)
T ss_pred HHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHH
Confidence 999998632 3677888888776 33343 4678888888888876653 344444555555432 446889
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhc
Q 004743 444 VEEHMLEHGVYPEEPELEALLRVSVEAGK-----GDRVYYLLHKLRTS 486 (732)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~-----~~~A~~l~~~M~~~ 486 (732)
+++.+.+.|+++....|..+ ..++-.+. .+...++.+.+.+.
T Consensus 204 l~~~l~~~~~kik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 204 LYNALKKNGVKIKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHcCCccccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 99999999999888877644 33333332 33444555555443
No 163
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.82 E-value=16 Score=43.65 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=67.5
Q ss_pred chhhhccccccccCcCCcccCccccccchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHH
Q 004743 120 NFAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELD 199 (732)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~ 199 (732)
+++...++....++....+.-++.++.....+-.++. +.+.|+.++|..+++..... +++ |..|..++-.
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs---l~r~gk~~ea~~~Le~~~~~--~~~-----D~~tLq~l~~ 85 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS---LFRLGKGDEALKLLEALYGL--KGT-----DDLTLQFLQN 85 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH---HHHhcCchhHHHHHhhhccC--CCC-----chHHHHHHHH
Confidence 3444444433333333333333334444443333333 45778888999888887332 222 5589999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.|-..+..++|..+|++.... -|+..-...+..+|+
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 999999999999999988743 577777777777777
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.61 E-value=18 Score=38.92 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..+.+.-|.-+...|+...|.++-++. ++ ||.+-|-.-|.+|+..+++++-.++... +-..+-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 346666788888899999999887654 34 8999999999999999999887776442 2234779999999
Q ss_pred HHhcCChHHHHHHHHHH
Q 004743 467 SVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M 483 (732)
|.+.|...+|..+..++
T Consensus 247 ~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 99999999999998874
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.43 E-value=7.4 Score=46.22 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=100.7
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
...+++..|.....++.++- ||. .|..+++++. +.|+.++|..+++.....+.. |..|...+-..|-..|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 35678889999888877652 443 5666666665 799999999999988776655 89999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHhc
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (732)
|..+|++.... .|+..-...+..+|.+.+.+.+-.+.=-+|-+. .|... .|.+|.=.+.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHh
Confidence 99999998754 688888889999999998877544444444443 34433 56665544444
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.04 E-value=1.5 Score=34.58 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+.+.|++++|.+.|+...+.. | +...+..+-.++.+.|++++|..+|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666655443 3 333444445555556666666666655544
No 167
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=89.00 E-value=44 Score=38.68 Aligned_cols=269 Identities=10% Similarity=-0.021 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
..|....-++--.|+...|..+.++..+.- -.|+...|.-....+-+.. .-.+.|....|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~----i~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ----ILIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH----HHHHcccHHHHHHHHH--------hh
Confidence 678888888888999999999999998665 3577777765544432210 0115666777777663 11
Q ss_pred ccCCCCCcccc-ccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc------hh-------hhhhccc----
Q 004743 271 DSRDMDNNGQL-DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRS---- 332 (732)
Q Consensus 271 ~~~g~~d~~ty-n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~------~~-------~li~~~~---- 332 (732)
+. .+.|.+.| -+--. .+.+.+++++|..++..+..+. ||-+-|. .+ .+...|.
T Consensus 212 e~-~i~Dkla~~e~ka~------l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 212 EK-QIVDKLAFEETKAD------LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hh-HHHHHHHHhhhHHH------HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 11111111 11111 1667788888888888888773 7877776 11 0001111
Q ss_pred ----------------------cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHH----hCC----
Q 004743 333 ----------------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC----LDE---- 382 (732)
Q Consensus 333 ----------------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~----~~g---- 382 (732)
......+..+.++|+.+--. . +.+.|-.....+--.++.-++. ..|
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---d-l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---D-LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---h-hHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 11112444555666554221 2 3333322222221122222222 111
Q ss_pred ------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004743 383 ------VPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (732)
Q Consensus 383 ------i~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (732)
-+|....|+ -++..|-+.|+++.|...++.-.. -.|+.+ -|-.=-..++.+|++++|..++++..+-.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 145655554 456667789999999999987554 356643 44444467888999999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~ 488 (732)
.||...-.--..-..++.+.++|.++.....+.+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 45554443444455678899999999988877743
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.72 E-value=26 Score=38.15 Aligned_cols=248 Identities=16% Similarity=0.107 Sum_probs=140.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCC--cc
Q 004743 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL-CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NG 279 (732)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~-~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d--~~ 279 (732)
-.|+.+.|.+-|+.|... +.|--.=|.+ |..+. +.|.-+-|.+.-. +.- +.-+ ..
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAq-------r~GareaAr~yAe-------~Aa---~~Ap~l~W 189 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQ-------RLGAREAARHYAE-------RAA---EKAPQLPW 189 (531)
T ss_pred hcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHH-------hcccHHHHHHHHH-------HHH---hhccCCch
Confidence 469999999999999852 3333332333 33333 5666666665542 111 1112 23
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcC-CCCCccccchhhhhhccc------cccCCCchhhhccCCCCChh
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRS------NLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-i~Pd~~ty~~~~li~~~~------~~a~~~~~~m~~~g~~pd~~ 352 (732)
.+.+++.. .|..|+|+.|+++.+.-++.. +.||+.--....|+.+.. +.+...-.......+.||.+
T Consensus 190 A~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 190 AARATLEA------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLV 263 (531)
T ss_pred HHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc
Confidence 36677888 999999999999999877654 455554333222222221 11111112222334455554
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-hhhHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-LRSYGPALS 430 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd-~~ty~~lI~ 430 (732)
--..+--..+.+.|++.++-.+++.+-+..--|+.. ++..+++.|+ .+.+=++..++. .++|| ..+--.+..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 433334467788888888888888888776555532 2222334443 344333333322 24454 344455666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~l~~~M~~~ 486 (732)
+-...|++..|..--+.... ..|....|-.|-+.- +..|+-.++...+-+-.+.
T Consensus 338 aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66777887776654443332 357777777766655 3447877777776665444
No 169
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=88.65 E-value=54 Score=38.10 Aligned_cols=125 Identities=10% Similarity=-0.003 Sum_probs=89.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
.+..--..|..+.-..+|++.... ++-.++.|-...+-+-..|++..|..++.+..+..- -+...|-..+..-..+.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhcccc
Confidence 333333456777777788877764 455667777777777778888888888887766532 256677788888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++.|..+|..... ..|+...|.--+...--.+..++|.+++++-.+.
T Consensus 634 ~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 634 LERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 8888888877665 4577777776666666678888888888776665
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.16 E-value=3.2 Score=33.33 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
..|.+.+++++|.++++.+.... ..+...|...-..+.+.|++++|...|+...+. .|.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 34666677777777777776553 223344444555566777777777777776665 44443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.07 E-value=1.8 Score=34.09 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
.+.+.|++++|.+.|++..+.. +-+...+..+-.++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666666666666554 22445555666666666666666666666543
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.75 E-value=13 Score=38.19 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=98.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-----H
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~-----~ 432 (732)
++...--.|.+.-...++.+..+..-+-+.+..+.|.+.-.+.|+.+.|...|+...+..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 44444445667777888888888877778899999999999999999999999988877556677777766542 4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~ 496 (732)
.-+.+...|...|.++.... .-|...-| +|+..| .|+..+|.+.+..|... .|.|.+-+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 44578888998898887654 12222222 444444 58899999999999887 66666433
No 173
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.56 E-value=44 Score=40.70 Aligned_cols=109 Identities=9% Similarity=0.044 Sum_probs=49.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++
T Consensus 1110 lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 444444445555554443321 134455555555555555555555554444443434332 345555555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
+.+-+++.. -||......+=+-|...|.++.|.-++.
T Consensus 1182 l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1182 LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 544333321 2444444444444444444444444333
No 174
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.38 E-value=11 Score=39.98 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC---Ccccccc
Q 004743 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (732)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~---d~~tyn~ 283 (732)
+++.+.+++.|++.|++-+.++|-+.+-...... .....-...+|..++ +.|+++..+- +.+++.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 5667889999999999998888776444443210 000112245677777 4677664443 6666777
Q ss_pred cccc
Q 004743 284 GSSP 287 (732)
Q Consensus 284 LI~~ 287 (732)
|+..
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 7666
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.37 E-value=7.1 Score=47.43 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=102.2
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|..||.. +...+++++|.++.++-.+ ..|+...+ .++.|.......-.+++.. . . +++
T Consensus 34 ~~~Li~~------~~~~~~~deai~i~~~~l~--~~P~~i~~---yy~~G~l~~q~~~~~~~~l---------v-~-~l~ 91 (906)
T PRK14720 34 LDDLIDA------YKSENLTDEAKDICEEHLK--EHKKSISA---LYISGILSLSRRPLNDSNL---------L-N-LID 91 (906)
T ss_pred HHHHHHH------HHhcCCHHHHHHHHHHHHH--hCCcceeh---HHHHHHHHHhhcchhhhhh---------h-h-hhh
Confidence 6777888 8899999999999984444 46888777 4555553221111222211 1 2 555
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
......++.-...+...|...+ -+...+-.|..+|-+.|+.++|..+++++.+.. .-|...-|-+=..|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 5666666655666666666643 345688889999999999999999999999886 34567777777778888 9999
Q ss_pred HHHHHHHHHHC
Q 004743 441 ACSVEEHMLEH 451 (732)
Q Consensus 441 A~~l~~~M~~~ 451 (732)
|.+++......
T Consensus 168 A~~m~~KAV~~ 178 (906)
T PRK14720 168 AITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHH
Confidence 99888776654
No 176
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=54 Score=36.03 Aligned_cols=253 Identities=10% Similarity=-0.000 Sum_probs=123.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 200 MCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
+.|-.++-..|..++-..... -++-|++....+-+.+. ..|+.++|+..|.. ..|.+-..+..-
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~dpy~i~~M 269 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCANPDNVEAM 269 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCChhhhhhH
Confidence 334456666666666666543 45667788888888888 88999999999951 011111001100
Q ss_pred cccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhh-hhhccccccCCCchh---hhccCCCCChhhh
Q 004743 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ-LLDGRSNLERGPDDQ---SRKKDWSIDNQDA 354 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~-li~~~~~~a~~~~~~---m~~~g~~pd~~ty 354 (732)
-.|..| +.+.|+++....+...+.... -|+... ..++....-++-+.. ...+.+..|....
T Consensus 270 D~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 270 DLYAVL---------LGQEGGCEQDSALMDYLFAKV------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred HHHHHH---------HHhccCHhhHHHHHHHHHhhh------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 114444 556677777666666554321 010000 000110000000000 0011111222222
Q ss_pred HHHHH--HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--HH
Q 004743 355 DEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LS 430 (732)
Q Consensus 355 n~~lI--~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l--I~ 430 (732)
-..++ ..+...++.++|.=-|..-..-. +-+...|--|+.+|...|.+.+|.-+-++..+. +.-+..+.+.+ .-
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 23222 33445567777777776654321 235677888888888888888776655543322 11222222211 00
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-...--++|..+++.-.. +.|+- ...+.+-..+...|..+++..+++.-...
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred eccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 11111223556665554332 23442 23445555566677777777777766554
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=86.40 E-value=9.9 Score=36.18 Aligned_cols=87 Identities=9% Similarity=-0.046 Sum_probs=41.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (732)
+...|++++|..+|+-.... .|....|--=+.+++ ..|++++|...|........ -|...+-.+=.++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 34555555555555554432 233333322222222 23555555555555554442 233344444445555556665
Q ss_pred HHHHHHHHHhc
Q 004743 476 VYYLLHKLRTS 486 (732)
Q Consensus 476 A~~l~~~M~~~ 486 (732)
|.+-|+.-...
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 178
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=86.20 E-value=2.6 Score=37.62 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=53.5
Q ss_pred CCCccEEEeccc---cccCCCCCChhhHHHHHHHHHcCceeeCCCCCCchHH--HHHHHHhCCcEEEeCcccccccc
Q 004743 640 SKKWPLIVLHNR---RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWY--WLYAAIKFKCLLVTNDEMRDHTF 711 (732)
Q Consensus 640 ~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~--~lyaa~~~~~~~vsnD~~RdH~~ 711 (732)
+|++++|+|+.= .+..+.....++...++++.+.+.+-+......-+|+ .+..|-+.+++||||.++|--.+
T Consensus 22 rGHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~~~eV~~~Aek~~GI~VSs~E~~~~~~ 98 (122)
T PF14626_consen 22 RGHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKWFNEVLDEAEKTHGIFVSSSEYRRRNF 98 (122)
T ss_pred ccCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHHHHHHHHHHHHcCcEEECCHHHhcccc
Confidence 699999999854 3333334477889999999999998777666555554 34555568999999999875554
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.91 E-value=2.4 Score=34.72 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCC-hhhHHHHHHHHHhcCChHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g-~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (732)
+|+.+-..|...|++++|...|++.... | -.|+ ..+|+.+=..|...|+.++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555555555555555555544322 1 0111 23444444444445555555554444
No 180
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=74 Score=36.55 Aligned_cols=136 Identities=13% Similarity=0.200 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~--------~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
....|.+++...-+..-.-..++--+++......|+++.|.+++. .+.+.+..|-++.+ ++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 466777777776654322234566667777888999999999999 66677777776654 55667777777
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHhccCCCCh-hH-HHHHHHHHhchH
Q 004743 439 DKACSVEEHMLEH--GVYPEEPELEALLR----VSVEAGKGDRVYYLLHKLRTSVRKVSP-ST-ADVIAKWFNSKE 506 (732)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~Li~----~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t-~~~I~~~~~~~~ 506 (732)
+.|-.++.+.... .-.+.......++. .=.+.|..++|..+++++.+. .+.. ++ ...+.+++.-..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhcCH
Confidence 7788888766432 11222233333333 335789999999999999885 2222 23 344777766543
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=84.99 E-value=18 Score=32.91 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHH-HHHHHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPEL-EALLRVS 467 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd---~~ty-~~Li~~~ 467 (732)
-.++-..|+.++|..++++-...|+... ...+--+=..|-..|+.++|..++++..... |+ .... ..+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3456678999999999999999887765 3455556677888899999999999887652 44 1111 1222356
Q ss_pred HhcCChHHHHHHHHHHH
Q 004743 468 VEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~ 484 (732)
...|+.++|...+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78899999998886543
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.76 E-value=12 Score=38.97 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhh
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRS 424 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t 424 (732)
.|.. .+..+.+.|++++|...|+.+...- |+. ..+-.+-..|...|++++|...|+.+.+. .|+ ...
T Consensus 145 ~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 145 DYNA-AIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 3444 5555567799999999999999763 332 45667888899999999999999999865 132 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
+--+...+...|+.++|..+|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445667889999999999988765
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.22 E-value=25 Score=33.53 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=72.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
-.-+...|++++|..+|+-+..-. +-+..-|-.|=-+|-..|++++|.+.+........ -|.+.|-.+=.++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 345678899999999999988754 23445566666677789999999999999887753 4566777777889999999
Q ss_pred HHHHHHHHHHHHC
Q 004743 439 DKACSVEEHMLEH 451 (732)
Q Consensus 439 ~~A~~l~~~M~~~ 451 (732)
+.|.+-|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
No 184
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=66 Score=36.71 Aligned_cols=220 Identities=13% Similarity=0.103 Sum_probs=116.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~--Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
..++|-++=--|--.|+..+|.+.|.....- -+.| .|-..=+.|+ -.|.-|.|...+..- +
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---aWl~fghsfa----------~e~EhdQAmaaY~tA---a- 373 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---AWLAFGHSFA----------GEGEHDQAMAAYFTA---A- 373 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---HHHHHhHHhh----------hcchHHHHHHHHHHH---H-
Confidence 3478887777777779999999999876532 2223 3333334444 445555555554210 0
Q ss_pred hhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccC
Q 004743 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKD 346 (732)
Q Consensus 268 em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g 346 (732)
.++. |+.-..-|-. .+|.+.+.+..|.++|.+-. ++.|+. ..++
T Consensus 374 rl~~--G~hlP~LYlg--------mey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~----------------------- 418 (611)
T KOG1173|consen 374 RLMP--GCHLPSLYLG--------MEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLH----------------------- 418 (611)
T ss_pred Hhcc--CCcchHHHHH--------HHHHHhccHHHHHHHHHHHH--hcCCCcchhhh-----------------------
Confidence 1111 3321111211 12666777888888886544 344543 3332
Q ss_pred CCCChhhhHHHHHHHHHhcc-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 347 WSIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g-~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
...++.|+. ..|.++- -+..|++..+......+ -=.-+++.|=.+|-+.+..++|...++.-... .+-|..+|
T Consensus 419 -Elgvvay~~---~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~ 492 (611)
T KOG1173|consen 419 -ELGVVAYTY---EEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTH 492 (611)
T ss_pred -hhhheeehH---hhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHH
Confidence 001111111 1111111 12233322222222211 12345666666777777777777777765544 34466667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
.++=-.|...|+++.|.+.|.+-. .+.||..+-..|+..+..
T Consensus 493 asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 776666777777777777776654 356777666666665543
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.34 E-value=6.8 Score=31.00 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
+|..+-..+...|++++|...|++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 186
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.80 E-value=67 Score=33.10 Aligned_cols=130 Identities=8% Similarity=0.019 Sum_probs=92.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~-~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
+.=+....|+.+.|...++.+..+- |...=.-.|=. -+-..|+.++|.++++.+.+.. +-|.++|--=|...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3334456788889999999988763 33221111111 1335788999999999988775 556777776666666677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+--+|.+-+.+-.+. +.-|...|.-|-..|...|++++|.-.+++|.-. .|...
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~ 188 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNP 188 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcH
Confidence 777777766665544 4678999999999999999999999999999765 44433
No 187
>PLN02789 farnesyltranstransferase
Probab=81.46 E-value=66 Score=34.58 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=92.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
+-..+...++.++|+.+.++..+.. +-+..+|+.--..+.+.| ++++++..++++.+..- -+..+|+.---.+-+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC
Confidence 4556677889999999999988753 223345555545556666 57999999999887632 23345664433344555
Q ss_pred C--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 437 D--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 437 ~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+ .+++.++++.|.+.. .-|...|+..--++...|+++++++.++++.+. .+...
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 4 367888898888665 346778888878888889999999999999887 55544
No 188
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=81.45 E-value=22 Score=40.41 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=80.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~-~~~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
....+.|.++++.+..+ -|+...|...-. .+...|++++|.+.|++..... -+.....|--+.-.++-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45789999999999986 488777765543 4456999999999999755321 11122333335556778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHh
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-------~~A~~l~~~M~~ 485 (732)
|.+.|..+.+.. .....+|..+..+| ...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998753 23344454444443 445666 888888887644
No 189
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=81.11 E-value=3.7 Score=39.65 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=29.8
Q ss_pred eeeCCCCCCchHHHHHHHHh-----CCcEEEeCccc-ccccc----cccCCchhhhhhh
Q 004743 676 LYATPTGSNDDWYWLYAAIK-----FKCLLVTNDEM-RDHTF----QLLGNDFFPRWKE 724 (732)
Q Consensus 676 ~~~~~~~s~DD~~~lyaa~~-----~~~~~vsnD~~-RdH~~----~l~~~~~f~rW~~ 724 (732)
+++|+.+...|-|+.-.+-. .++.|||+|.. +.+.+ .-++.+-|.+|-.
T Consensus 70 Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 70 VVFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELK 128 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHH
Confidence 56688876666666655554 26899999975 33333 2234455666543
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=81.10 E-value=31 Score=36.23 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=71.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALS 430 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~pd--~~ty~~lI~ 430 (732)
.+..|.+.|++..|-+++.++ -..|-.. |++++|.+.|.+-... | .+. ...+.-+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 556666666666665555443 4455555 7888888888765432 3 222 345566778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC-----CCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVY-----PEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~-----pd~~t--y~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.+.|++++|.++|++....-+. .+... +.++| ++...|+...|.+.|++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999998875432 22322 23444 556679999999999998765
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.58 E-value=33 Score=38.32 Aligned_cols=63 Identities=14% Similarity=-0.035 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
...|++ +-..|.+.|++++|...|++-.+. .||. .+|..+-.+|++.|+.++|.+.+++..+.
T Consensus 75 a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666 778889999999999999987664 4553 46899999999999999999999988765
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.51 E-value=24 Score=39.34 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
+.+...|+.+-.+|.+.|++++|...|++-.+. .|+.. +|..+-.+|...|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999986654 57743 5788999999999999999999998875
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=80.31 E-value=4.4 Score=33.09 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv-~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+|+.+=..|...|++++|...|++..+. |- .|+ ..+++.|-..|...|+.++|.+++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888999999999999999987643 21 133 5678888888999999999999998754
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=80.24 E-value=6.7 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
|.+.+++++|.++++.+...+ +.+...|...-.++.+.|++++|...|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444455555555555555442 2233444444444555555555555555444
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=79.56 E-value=98 Score=35.71 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 004743 369 QRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (732)
Q Consensus 369 ~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (732)
..+.+..++.... ....+...|.++--.+...|++++|...+++..... |+...|..+-..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444433332 233455778877666667899999999999988765 7888999999999999999999999988
Q ss_pred HHHCCCCCCHHHHH
Q 004743 448 MLEHGVYPEEPELE 461 (732)
Q Consensus 448 M~~~gv~pd~~ty~ 461 (732)
.... .|...||-
T Consensus 479 A~~L--~P~~pt~~ 490 (517)
T PRK10153 479 AFNL--RPGENTLY 490 (517)
T ss_pred HHhc--CCCCchHH
Confidence 7654 46666653
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.36 E-value=9.2 Score=30.24 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRT 485 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-~~~~A~~l~~~M~~ 485 (732)
..+|..+=..+...|++++|...|++..+.. .-+...|..+-.+|.+.| +.++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4566777778899999999999999998864 235567777778888889 79999999987654
No 197
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.92 E-value=8.4 Score=40.50 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=70.9
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcC---CCCCccccchhhhhhccccccCCCchhhhccCCCCChhh
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (732)
.+++-..++.. -.+..+++++..++-.++..- ..|+...|
T Consensus 63 s~~~Vd~~V~v------~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~------------------------------- 105 (418)
T KOG4570|consen 63 SSLTVDRLVDV------ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH------------------------------- 105 (418)
T ss_pred ceeehhhhhhc------cccccchhHHHHHHHHHhcCcchhhhccccHH-------------------------------
Confidence 55556666666 667788888887776665431 22222222
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
.+--.+-.-++++++-++..=...|+-||.+|++.||+-+.+.+++.+|..+.-+|...
T Consensus 106 ----~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 ----TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ----HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22334455577888888888888899999999999999999999999988888777655
No 198
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.78 E-value=36 Score=35.73 Aligned_cols=140 Identities=9% Similarity=0.168 Sum_probs=101.2
Q ss_pred ccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHH
Q 004743 365 KYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMS-MG-DGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~~~~-~g-~~~~A~~l~~~M~~~-g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
+..+.+|+.+|+...- ..+--|..+...|++.... .+ ....-.++.+.+... |-.++.-+-.++|..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3456678888874333 3456677777777777766 22 333445555555543 566888888999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhccCCCChhHHHHHHHHHhc
Q 004743 441 ACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK-----LRTSVRKVSPSTADVIAKWFNS 504 (732)
Q Consensus 441 A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~-----M~~~~~~~~p~t~~~I~~~~~~ 504 (732)
-+++++..... +-.-|..-|..+|+...+.|+..-...+.++ +++.+..++|+....|..+|+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999887755 5667888999999999999998877777664 4555445666676667777653
No 199
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.06 E-value=21 Score=37.37 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
++..++..+...|+.+.+.+.++++.... .-|...|..||.+|.+.|+...|...++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34455555666666666666666665543 34566666666666666666666666665544
No 200
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.88 E-value=50 Score=37.03 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=105.6
Q ss_pred hhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004743 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405 (732)
Q Consensus 326 ~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~ 405 (732)
.++.|-...+...|+..+...-.++.. |-- +-..|....+.++....|++-..-. +-|..+|--=-..+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~-~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIK-RAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHH-HHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344444455555666655432222221 322 5577888889999999999887654 2234455544455555678888
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 406 AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 406 A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
|..=|++-++. .| ++..|--+--+.-+.+.+++++..|++.+++ +.-....|+-.-..+...+++++|.+.++.-.
T Consensus 413 A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 88888876654 34 3556666666666889999999999998865 34445678888888999999999999998876
Q ss_pred hc
Q 004743 485 TS 486 (732)
Q Consensus 485 ~~ 486 (732)
+.
T Consensus 490 ~L 491 (606)
T KOG0547|consen 490 EL 491 (606)
T ss_pred hh
Confidence 54
No 201
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.08 E-value=81 Score=37.66 Aligned_cols=183 Identities=14% Similarity=0.057 Sum_probs=100.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccc
Q 004743 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (732)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~ty 281 (732)
..-|.+++|+.+|.+=++ |..|=+.|- ..|.+.+|.++-. -.++ +.=..||
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQ----------s~g~w~eA~eiAE--------~~DR--iHLr~Ty 861 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQ----------SQGMWSEAFEIAE--------TKDR--IHLRNTY 861 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHH----------hcccHHHHHHHHh--------hccc--eehhhhH
Confidence 567999999999998775 344445555 5678889888863 2221 1111122
Q ss_pred ccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHH
Q 004743 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (732)
Q Consensus 282 n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (732)
--- .+.+-..++++.|++.|+.- ++..++.-.++.-+-..-+.....|. .|....|.. ..
T Consensus 862 y~y------A~~Lear~Di~~AleyyEK~-------~~hafev~rmL~e~p~~~e~Yv~~~~----d~~L~~WWg---qY 921 (1416)
T KOG3617|consen 862 YNY------AKYLEARRDIEAALEYYEKA-------GVHAFEVFRMLKEYPKQIEQYVRRKR----DESLYSWWG---QY 921 (1416)
T ss_pred HHH------HHHHHhhccHHHHHHHHHhc-------CChHHHHHHHHHhChHHHHHHHHhcc----chHHHHHHH---HH
Confidence 111 11144466788888877632 22223211122111111111112222 234455555 22
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A 441 (732)
+-..|.++.|+.++...+. |-++++..|-.|+.++|-++-++-. |....-.|-..|-..|++.+|
T Consensus 922 lES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 922 LESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHH
Confidence 3345788888888876553 5567777777788888777766522 333333355666667777777
Q ss_pred HHHHHHH
Q 004743 442 CSVEEHM 448 (732)
Q Consensus 442 ~~l~~~M 448 (732)
..+|.+.
T Consensus 987 v~FfTrA 993 (1416)
T KOG3617|consen 987 VKFFTRA 993 (1416)
T ss_pred HHHHHHH
Confidence 7666543
No 202
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.71 E-value=22 Score=37.52 Aligned_cols=104 Identities=10% Similarity=0.050 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004743 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (732)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (732)
.|.+....+...++..-....+++.+...+-.++.. -..|+...|. .|. +|-.=+.+++..+...=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhccccch
Confidence 344555555565665555566666666666555433 1223333222 222 33334455666666666666777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+++.||+.+.+.++..+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777766666666555443
No 203
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=74.15 E-value=27 Score=32.14 Aligned_cols=88 Identities=8% Similarity=0.007 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
...+|..+...+....+..+++.+...+. .+...+|.+|..|++... .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888999999999999988874 677899999999998753 344444442 2344445668888888
Q ss_pred cCChHHHHHHHHHHHh
Q 004743 470 AGKGDRVYYLLHKLRT 485 (732)
Q Consensus 470 ~g~~~~A~~l~~~M~~ 485 (732)
.+.++++..++.++..
T Consensus 82 ~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 82 AKLYEEAVELYKKDGN 97 (140)
T ss_pred cCcHHHHHHHHHhhcC
Confidence 8888888888888743
No 204
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.60 E-value=71 Score=30.56 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=8.7
Q ss_pred HhcCChHHHHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~ 450 (732)
...|++.+|..+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344555555555555443
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.77 E-value=81 Score=29.27 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=69.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C----------------CCCChhhHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----------------INPRLRSYGP 427 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g----------------~~pd~~ty~~ 427 (732)
.|.++++.++..+..... +..-||-+|--....-+.+-.+++++.+-+. . ..-+..-...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 355677788888877643 4455665655555555555555555543221 0 0112233455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+.+...|.-|.-.+++.++... -.++....-.+-.+|.+-|+..++-+++.+--++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 677777778777777888777653 3677777888888899999999998888888777
No 206
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=72.21 E-value=1.3e+02 Score=35.81 Aligned_cols=208 Identities=8% Similarity=-0.000 Sum_probs=111.5
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccccccccccccc
Q 004743 218 QREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS 297 (732)
Q Consensus 218 ~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~ 297 (732)
....+.-|...|..|--+.. .+|+++.+.+.|. +-|.. -+.-...|+.+--. +.-.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~----------~~g~f~~lae~fE------~~~~~--~~~~~e~w~~~als------~saa 370 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALS----------RCGQFEVLAEQFE------QALPF--SFGEHERWYQLALS------YSAA 370 (799)
T ss_pred HHhhhcchHHHHHHHHHHHH----------HHHHHHHHHHHHH------HHhHh--hhhhHHHHHHHHHH------HHHh
Confidence 33445567788888887777 7888888888885 22221 11123336655555 6667
Q ss_pred CChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHH
Q 004743 298 YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (732)
Q Consensus 298 g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~ 377 (732)
|.-..|..++++-....-.|+..+-- .+....| +-+.+..+++.+.-.+
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~--Lmasklc-----------------------------~e~l~~~eegldYA~k 419 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVL--LMASKLC-----------------------------IERLKLVEEGLDYAQK 419 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHH--HHHHHHH-----------------------------HhchhhhhhHHHHHHH
Confidence 77677777776543332123323221 2222222 1112333333333222
Q ss_pred HHh------CCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChH
Q 004743 378 MCL------DEVPMNEASLTAVGRMAMS-----------MGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 378 M~~------~gi~pd~~ty~~LI~~~~~-----------~g~~~~A~~l~~~M~~~g-~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
... .-+.| ..|-.+=-+|.. .....++.+.+++..+.+ -.|++.-|-++= |+..++++
T Consensus 420 ai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~ 495 (799)
T KOG4162|consen 420 AISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLT 495 (799)
T ss_pred HHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHH
Confidence 222 11112 122222112221 112235666676665543 445444443332 66677888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.|++...+..+.+-.-+...|.-|.-.+.-.+++.+|+.+.+.-.
T Consensus 496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 888888888877656777778777777777788888887776543
No 207
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=71.79 E-value=80 Score=30.47 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=73.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.+.+..+.+.|++|+...|..+|+.+.+.|+... +..+...++-||.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 5666777788999999999999999999998654 4555567888887777666644433 334455554455432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
=...+..+++.+...|++-+|.++.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0124577888899999999999998875
No 208
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.43 E-value=30 Score=36.28 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA 462 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~~ 462 (732)
.+++.++..+...|+.+.+...++++.... +-|...|-.+|.+|.+.|+...|...|+.+.. .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 467777777777777887777777777652 34667777788888888887777777776644 588888877777
Q ss_pred HHHHH
Q 004743 463 LLRVS 467 (732)
Q Consensus 463 Li~~~ 467 (732)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 76664
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=71.28 E-value=58 Score=36.16 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=97.2
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcC-CCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
|..+|+. ..+..-++.|..+|-+..+.| +.|++..| ++ +|
T Consensus 400 ~C~~~N~------v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~--------------------------------~A-~~ 440 (660)
T COG5107 400 FCVHLNY------VLRKRGLEAARKLFIKLRKEGIVGHHVYIY--------------------------------CA-FI 440 (660)
T ss_pred HHHHHHH------HHHHhhHHHHHHHHHHHhccCCCCcceeee--------------------------------HH-HH
Confidence 5566666 555566677777777776666 44444444 46 77
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcC
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNG 436 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t-y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g 436 (732)
..+|. |+..-|..+|+-=... -||... -+-.+.-+...++-+.|..+|+.-+.. +.-+ ...|-.+|..=..-|
T Consensus 441 E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 441 EYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhc
Confidence 76654 5667888998753332 244444 356677778899999999999954433 2223 568999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
++..|..+-+.|.+. .|-..+-.....-|.
T Consensus 517 ~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 517 SLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred chHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 999999998888764 566666555555443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=71.06 E-value=75 Score=31.49 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=47.9
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~ 237 (732)
.-..++..+|.+.|+.+... .|.....|+ ..-.+..++-+.|++..|...|++..+. .-.|. .-+...+.|.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~--A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~ 88 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDR--YPNSPYAPQ--AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLS 88 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHH
Confidence 34678999999999999765 344434444 4456788999999999999999998854 22232 23444444444
No 211
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.16 E-value=95 Score=29.22 Aligned_cols=103 Identities=7% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-hHHHHHHH
Q 004743 374 IYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGD-VDKACSVE 445 (732)
Q Consensus 374 lf~~M~~~gi~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~~~g~-~~~A~~l~ 445 (732)
....|.+.+..++. ...|+++.-.+..+.+.....+++.+.... -..+-.+|++++.+..+..- ---+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 34445666666665 346888888888888888888888774321 12456789999999977766 44567889
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
.-|++.+.+++..-|..||.++.+.-..+..
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 9999888999999999999987765444433
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.83 E-value=1.4e+02 Score=30.69 Aligned_cols=73 Identities=12% Similarity=-0.078 Sum_probs=48.6
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCS 237 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~LL~~~~ 237 (732)
..+.++.++|.+.|+.+... .|.....+. ..-.+..++-+.+++++|...|++..+.- -.|+ .-|...+.|.+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~--a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~ 115 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQQ--VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLT 115 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHh
Confidence 44678999999999999653 232211111 22345678899999999999999998653 3343 34555566655
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=69.26 E-value=43 Score=31.33 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=34.9
Q ss_pred hccCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004743 364 KKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g--i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~ 434 (732)
+.|++++|.+.|+.+..+- -+-..-.--.|+.+|.+.+++++|...+++..+..=.--.+-|.-.+.|++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4556666666666665541 1122334444555666666666666666555544211112344444444443
No 214
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.94 E-value=57 Score=34.32 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=52.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGD 474 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~ 474 (732)
+.+.+++.+|.+.|.+-.+. .|+ .+-|.-=-.+|++-|+.+.|.+=.+..+.- .|. ..+|..|=.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 34566666666666665543 333 334444455666666666666555444422 222 345666666677777777
Q ss_pred HHHHHHHHHHhccCCCChhHHHH
Q 004743 475 RVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
+|.+.|++-.+- .|.-.+|..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHH
Confidence 777776665543 343335544
No 215
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=67.83 E-value=51 Score=32.08 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----H
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEE----P 458 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---gv~pd~----~ 458 (732)
..+..+.+-|++.|+.++|.+.+.++......|. +..+-.+|....-.+++..+.......... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567777788888888888888888777654444 345556777777777877777766554432 222221 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|..|. +...+++.+|-++|-+....
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCcC
Confidence 222222 13467888888888776543
No 216
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.94 E-value=1.6 Score=40.61 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=58.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+|+.+-+.+.++....+++.+...+..-+....|.|+..|++.+..+...++++. .+.+-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 7777878888888888888888776666778888888888888777777777761 222333557777777777
Q ss_pred hHHHHHHHHHH
Q 004743 438 VDKACSVEEHM 448 (732)
Q Consensus 438 ~~~A~~l~~~M 448 (732)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77776666553
No 217
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.70 E-value=1e+02 Score=29.15 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=48.3
Q ss_pred HhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A 441 (732)
...++++++..+++.|..-- -.|...+|-..| +...|++++|.++|++..+.+. ...|...+.++|-...-|-.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChH
Confidence 34678888888888887532 123334454444 4567888888888888776642 22566677777766544444
Q ss_pred HHHH
Q 004743 442 CSVE 445 (732)
Q Consensus 442 ~~l~ 445 (732)
+..+
T Consensus 96 Wr~~ 99 (153)
T TIGR02561 96 WHVH 99 (153)
T ss_pred HHHH
Confidence 4433
No 218
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.65 E-value=1.2e+02 Score=28.95 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=61.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
++..-.+.++.+++..+++-|..-.- .|...++-.+| +...|++.+|.++|+++... +....|...+.++|-..
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHH
Confidence 44555677899999999999987421 23344455444 46899999999999998766 33445666777777765
Q ss_pred ChHHHHHHHHH-HHHCCCCC
Q 004743 437 DVDKACSVEEH-MLEHGVYP 455 (732)
Q Consensus 437 ~~~~A~~l~~~-M~~~gv~p 455 (732)
.-+-.++.+.. +.+.+-.|
T Consensus 91 ~~D~~Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADP 110 (160)
T ss_pred cCChHHHHHHHHHHhcCCCh
Confidence 55555555533 44444333
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.50 E-value=34 Score=40.17 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
|.+--+.-+...|+-.+|.++-.+.+ -||.+-|--=|.+++..+++++-+++-+.+.. ..=|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 34444444455555555555544432 25555565556666666666555554444331 223444555556
Q ss_pred hcCChHHHHHHHHHH
Q 004743 469 EAGKGDRVYYLLHKL 483 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M 483 (732)
+.|+.++|.+++.+.
T Consensus 756 ~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRV 770 (829)
T ss_pred hcccHHHHhhhhhcc
Confidence 666666666665554
No 220
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=66.37 E-value=2.3 Score=39.47 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+|+.+-+.+.+..+..+++.+...+..-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4556666667777777777777665555566677777777777766666666661 111233455666666666
Q ss_pred hHHHHHHHHHHHh
Q 004743 473 GDRVYYLLHKLRT 485 (732)
Q Consensus 473 ~~~A~~l~~~M~~ 485 (732)
+++|..++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 6666666666543
No 221
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.63 E-value=76 Score=33.43 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=80.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~ 439 (732)
-..+.+++++|+..|.+-.+-. +-|.+-|..=..+|++.|..+.|.+=-+.-.. +.|. ..+|..|=.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 3567889999999999988753 45788889899999999999999876655433 3344 578999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
+|.+.|+..++ +.|+-.+|-.=|..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999987764 57988887655543
No 222
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=65.04 E-value=1.1e+02 Score=34.54 Aligned_cols=80 Identities=9% Similarity=0.021 Sum_probs=56.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~lI~~~~~~ 435 (732)
+-.+.-+.|+.++|.+.|.+|.+.. ..-+....-.||.++...+...++..++.+-.+... +.-...|+..+--+-..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3445557799999999999997643 222445778899999999999999999988654333 22356788877555444
Q ss_pred CC
Q 004743 436 GD 437 (732)
Q Consensus 436 g~ 437 (732)
++
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 44
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=64.60 E-value=77 Score=29.69 Aligned_cols=98 Identities=7% Similarity=0.066 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p---d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
...|+.-..+ .+.|++++|.+.|+.+... .+. ....---|+.+|.+.|+.++|...+++.++..=.--.+-|...
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3444444433 4789999999999998876 222 2244455899999999999999999998875422222455556
Q ss_pred HHHHHhcCC-----------------hHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGK-----------------GDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~-----------------~~~A~~l~~~M~~~ 486 (732)
+.|++.-.. ...|+.-|+++.+.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 666543322 56888888888876
No 224
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=63.53 E-value=1.5e+02 Score=28.70 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=79.8
Q ss_pred ccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCC
Q 004743 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPR 421 (732)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g--~~~~A~~l~~~M~~~g~~pd 421 (732)
..|+.|+...|.- +|+.+.+.|++ ..+..+...++-+|.......+-.+.... -..-|.+++.++..
T Consensus 22 ~~~i~~~~~L~~l-li~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~------ 90 (167)
T PF07035_consen 22 QHNIPVQHELYEL-LIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT------ 90 (167)
T ss_pred HcCCCCCHHHHHH-HHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh------
Confidence 3455555555556 99999999984 44566667788888777766664443321 12345555555542
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.|..++..+...|++-+|.++...... .+......++.+..+.++...-..+|+-...
T Consensus 91 --~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 256788899999999999998876532 1222335677777777776655555555444
No 225
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.19 E-value=30 Score=39.65 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=79.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
...+.|+++.|.++..+.. ++.-|..|=++....|++..|.+.|..-. -|..|+-.+...|+.+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhH
Confidence 3457788899988877643 57789999999999999999999997643 35788888999999887
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
-..+-....+.|. - |.-.-+|...|++++..+++.+-
T Consensus 711 l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777777763 2 44445667789999999887664
No 226
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.10 E-value=48 Score=31.15 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHhch
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~~~ 505 (732)
++.+.+.+.|++++..= ..+++.+.+.+..-.|.++++++++..-++++. .|+++..+-..|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 45566778888876544 567788888877799999999999986666666 477777665443
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=61.09 E-value=1.9e+02 Score=30.47 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PEL 460 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty 460 (732)
+-|.-.|-.|=..|...|+.+.|..-|..-.+. |-.|+.. -|...+..-....+..+|.++|+++... .|+. .+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence 457889999999999999999999999876654 4444432 2222222222223567789999999865 3544 444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHH
Q 004743 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (732)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~ 495 (732)
..|--.+...|++.+|...++.|.+. .+..+.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~r 263 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPR 263 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCch
Confidence 55556778999999999999999987 4444444
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=60.78 E-value=1.8e+02 Score=28.77 Aligned_cols=121 Identities=11% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~lI~~~~~ 434 (732)
|-.+....|+..+|...|++-..--..-|....-.+.++....+++.+|..+++.+.+.. -.||.. -.+-..|..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHh
Confidence 667888899999999999987764455677888888888889999999999998877653 344432 223346677
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
.|....|+.-|+..... .|+...-...-..+.+.|+.+++..-+..
T Consensus 173 ~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 173 QGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred cCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 78888888888888765 34433322222334677766655443333
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=60.34 E-value=77 Score=36.75 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=57.5
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-----------hHHHHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----------SYGPALSV 431 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-----------ty~~lI~~ 431 (732)
-+...+.-|-++|..|-. .-+++..+...+++++|+.+-+...+ +.||++ -|--.-.+
T Consensus 758 k~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHH
Confidence 344567778889988864 24678888899999999999876543 345542 23335678
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 004743 432 FCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~g 452 (732)
|-++|+-.+|..+++.+....
T Consensus 827 fhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhhh
Confidence 999999999999999886543
No 230
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.88 E-value=1.6e+02 Score=27.91 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=63.9
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 388 ASLTAVGRMAM---SMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 388 ~ty~~LI~~~~---~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
.+.+.||+... ..++++++..++..|.-.. -.|...+|-..| +...|++++|..+|++..+.+..+ .|..-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHH
Confidence 34444544333 4889999999999987542 123345665555 578899999999999998775332 45555
Q ss_pred HHHHHhcCChHHHHHHH-HHHHhccCCCChhHHHHHHHH
Q 004743 464 LRVSVEAGKGDRVYYLL-HKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~-~~M~~~~~~~~p~t~~~I~~~ 501 (732)
+.++|-...-|-.++.. .++... +..+++...+..+
T Consensus 83 L~A~CL~al~Dp~Wr~~A~~~le~--~~~~~a~~Lv~al 119 (153)
T TIGR02561 83 LLALCLNAKGDAEWHVHADEVLAR--DADADAVALVRAL 119 (153)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHh--CCCHhHHHHHHHH
Confidence 55565544433333322 233344 5556555444443
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=59.25 E-value=97 Score=29.79 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=41.1
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004743 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~ 443 (732)
..|++++|..+|.-+...+. -|..-|..|-.+|-..+++++|..+|...-..+. -|.+.+-.+=.+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 45666666666665555331 1222334444444455566666666655443322 222222233344555566666665
Q ss_pred HHHHHHH
Q 004743 444 VEEHMLE 450 (732)
Q Consensus 444 l~~~M~~ 450 (732)
-|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5555443
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=59.15 E-value=4.6e+02 Score=33.03 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 004743 192 FQLRVELDMCSKRG--DVMGAIRLYDKAQR 219 (732)
Q Consensus 192 ~tyn~lI~a~~k~g--~~~~A~~lf~~M~~ 219 (732)
.-.-.+|.+|++.+ .+++|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 45567889999998 88888888888775
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.08 E-value=1.5e+02 Score=30.73 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH-HHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEE-PELEA 462 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g----~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~-~ty~~ 462 (732)
.|+.-++.+ +.|++.+|.+-|....+.. ..|| .+--|-..+...|+.+.|-.+|..+.+. +-.|-. ..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 577666544 5666888888887777652 2222 2333777788888888888888877654 212222 34444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 463 Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|-....+.|+.++|...|+++.+. +|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 555567888999999999999887 66654
No 234
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.46 E-value=94 Score=32.69 Aligned_cols=101 Identities=8% Similarity=0.090 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004743 367 AFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSV 444 (732)
Q Consensus 367 ~~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~lI~~~~~~g~~~~A~~l 444 (732)
.+..-.|+.+.+.. .|-.++..+..++|+.++..++++.-+++++..... +..-|.+.|...|......|+..-...+
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 33444566666654 356788889999999999999999999999887655 5667899999999999999998766666
Q ss_pred HHH-----HHHCCCCCCHHHHHHHHHHH
Q 004743 445 EEH-----MLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 445 ~~~-----M~~~gv~pd~~ty~~Li~~~ 467 (732)
.++ +++.|+..+...-.+|-..+
T Consensus 261 I~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 261 IDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 544 23445666555544444433
No 235
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.02 E-value=2.9e+02 Score=30.41 Aligned_cols=130 Identities=15% Similarity=0.069 Sum_probs=79.3
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh--hHHHHHHHHHhc---C
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLR--SYGPALSVFCNN---G 436 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~--ty~~lI~~~~~~---g 436 (732)
-+.|.-+.|...-+.--..- +-=...+.+++...|..|+++.|+++++.-+... +.++.. .-..|+.+-+.. -
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 35677777776666554432 1224677888999999999999999988765543 445532 333444433222 2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELE-ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~-~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
+...|...-. ....+.||.+--. .--.+|.+.|++.++-.+++.+-+. .|.|+.+..
T Consensus 244 dp~~Ar~~A~--~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l 301 (531)
T COG3898 244 DPASARDDAL--EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL 301 (531)
T ss_pred ChHHHHHHHH--HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH
Confidence 3333333322 2334556654322 2345678889999999999988877 888876544
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=57.64 E-value=3.2e+02 Score=30.72 Aligned_cols=174 Identities=7% Similarity=0.032 Sum_probs=104.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+-+.+++.+|.++|.......- .+...+ .+ ..+-+-+|++|..+ +++....
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~l-----------------ke----------Evl~grilnAffl~-nld~Me~ 66 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLL-----------------KE----------EVLGGRILNAFFLN-NLDLMEK 66 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHH-----------------HH----------HHHhhHHHHHHHHh-hHHHHHH
Confidence 4466788999999988765421 111111 10 01112277777644 4455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc--CCC------------CChhhHHHHHHHHHhcCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSL--GIN------------PRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~--g~~------------pd~~ty~~lI~~~~~~g~ 437 (732)
.+.+..+. .| ...|-.|..++. +.+..++|.+.+..-... +-. +|..-=+..++.+...|.
T Consensus 67 ~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 67 QLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR 143 (549)
T ss_pred HHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC
Confidence 66666553 12 234555555543 678888888888766554 322 233333668888999999
Q ss_pred hHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCChhHHHHHHHHHhchHH
Q 004743 438 VDKACSVEEHMLEHGV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADVIAKWFNSKEA 507 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv----~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~-~~~~~~p~t~~~I~~~~~~~~~ 507 (732)
+.+++.++++|...=+ ..+..+|+.++-.+.+.= |-++++ ....+-|+-|.+|..|.+....
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 9999999988876544 488999998776666532 223322 1124566677777777665444
No 237
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=57.56 E-value=23 Score=24.30 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKR 412 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~ 412 (732)
|+.|-..|.+.|++++|..++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555554
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=57.54 E-value=2.3e+02 Score=33.43 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhccCHHHHH------HHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 354 ADEIRLSEDAKKYAFQRGF------EIYEKMCL--DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~------~lf~~M~~--~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
|-. ....|.+.|+.+.-. ++|+++.. ..++-|.-..-.|-+++...|..++|.+.+-+ .+. |
T Consensus 812 We~-A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p----- 881 (1189)
T KOG2041|consen 812 WEE-AAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P----- 881 (1189)
T ss_pred HHH-HHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----
Confidence 434 456666666655433 33444432 23455666777888999999999999887743 222 3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--------------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty--------------~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-..+..|....++.+|.++-+... .|.+.|. ---|..+.++|+.-+|.+++.+|.+.
T Consensus 882 kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 356777888888888888776543 2333222 11244566788888888888888654
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.40 E-value=53 Score=37.02 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHH-------h----------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMC-------L----------DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~-------~----------~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p 420 (732)
++.-+-+.|..+.|+++...-. + ..-..+...|..|-+.....|+++-|++.|.+...
T Consensus 301 i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----- 375 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD----- 375 (443)
T ss_dssp HHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------
T ss_pred HHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----
Confidence 6666666777777666543322 1 11234667777777777777887777777765432
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
|..|+--|.-.|+.++-.++.+....+|- +|....++.-.|+.++..++|.+-
T Consensus 376 ----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 ----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 46677777777777777777766666552 455555666667777776666553
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=56.83 E-value=22 Score=24.41 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQ 218 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~ 218 (732)
+|+.|=..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999954
No 241
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.77 E-value=3.7e+02 Score=30.95 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=73.0
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVD 439 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~ty~~lI~~~~~~g~~~ 439 (732)
|--.|.+++|.+.|+...... +-|...||-|=..++...+-++|..-+.+-.+ ++|+- +=||.-| .|...|.++
T Consensus 440 y~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~yk 515 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYK 515 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHH
Confidence 445678899999998877643 34678899988888888889999999887664 46762 3455444 478888888
Q ss_pred HHHHHHHHHH---HC------CCCCCHHHHHHHHHHHHhcCChH
Q 004743 440 KACSVEEHML---EH------GVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 440 ~A~~l~~~M~---~~------gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
+|.+.|-+.+ .+ +-.++...|.+|=.++.-.++.|
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 8887765433 22 11233445655555555445444
No 242
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=55.54 E-value=1.3e+02 Score=26.58 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
+..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+.+ +.+....|..+|+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 34444555555566677777777777777777777777777665543 2233335555443
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.44 E-value=2.8e+02 Score=29.36 Aligned_cols=140 Identities=10% Similarity=0.098 Sum_probs=89.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
......|++.+|..+|+......- -+...--.|+.+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 356678899999999998876532 2344566789999999999999999998765422222222223344444444444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHh
Q 004743 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFN 503 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~ 503 (732)
+...+-...-. .| |...--.|-..|...|+.++|.+.|-.+.++.++-..+ ....+...|.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44444444332 45 55555667778889999999998887777665555544 3333444443
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=55.37 E-value=1.1e+02 Score=29.87 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=65.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----hhhHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPR----LRSYGPA 428 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---g~~pd----~~ty~~l 428 (732)
+-+.|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+...+.+.... |-.++ ...|..|
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 779999999999999999999987655543 45678889999999999988888776543 22222 2333333
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 004743 429 LSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~ 449 (732)
- +...+++.+|-++|-+..
T Consensus 122 ~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 122 A--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred H--HHHhchHHHHHHHHHccC
Confidence 2 234678988888886654
No 245
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.84 E-value=1.7e+02 Score=30.38 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=33.9
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
.++..|...|++..... .-|.+.-|.=.-+..-.|+..+|.+.++.|+.. .|...+-++++-.+|
T Consensus 266 nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLT 330 (366)
T ss_pred cchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHH
Confidence 34555666666555543 223333343333333456777777777776654 355555555444333
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.12 E-value=3.4e+02 Score=29.90 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (732)
Q Consensus 187 ~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~ 220 (732)
.+|| +..+.|+ +|-...+++..++|++.|...
T Consensus 139 ls~d-iv~~lll-SyRdiqdydamI~Lve~l~~~ 170 (374)
T PF13281_consen 139 LSPD-IVINLLL-SYRDIQDYDAMIKLVETLEAL 170 (374)
T ss_pred cChh-HHHHHHH-HhhhhhhHHHHHHHHHHhhcc
Confidence 4566 4445555 488889999999999999864
No 247
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.63 E-value=17 Score=33.56 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=28.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS 202 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~ 202 (732)
+-+.+...+|..||..|.+.|.-|+. |+.||..+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--------W~~Ll~~a~ 139 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--------WDALLKEAK 139 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--------HHHHHHHhc
Confidence 33778889999999999888866655 999997753
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.62 E-value=3e+02 Score=29.15 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=71.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
+..+|...|+.+.|..+++.+...--....+...+=|..+.+.....+..++-.+.-.. | |...=-.+-..+...|
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g 250 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVG 250 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 77899999999999999999876543333444444455556666665555555555544 5 4444445666788889
Q ss_pred ChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCh
Q 004743 437 DVDKACSVEEHMLEHGV-YPEEPELEALLRVSVEAGKG 473 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~~~g~~ 473 (732)
+.+.|.+.+-.+..+.. .-|-..=..||..+.--|..
T Consensus 251 ~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 251 RNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 99999887666654421 22333445555555554533
No 249
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.34 E-value=4.1e+02 Score=30.66 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHH
Q 004743 368 FQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVE 445 (732)
Q Consensus 368 ~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~ 445 (732)
+.+..++|-++.. .+..+|.-.++.|=-.|--.|+++.|.+.|+..... +|+ ...||-|=..++...+.++|...|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445666666654 454566667777777788899999999999987654 565 678999999999999999999999
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 446 EHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 446 ~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
.+.++- .|+- +=||.=| .|...|.+++|.+.|-.
T Consensus 488 ~rALqL--qP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 488 NRALQL--QPGYVRVRYNLGI-SCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHhc--CCCeeeeehhhhh-hhhhhhhHHHHHHHHHH
Confidence 998864 5653 3455444 56788999998888754
No 250
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.83 E-value=1.2e+02 Score=28.51 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=61.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDE---V--PMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g---i--~pd~~ty~~LI~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
++.-....+.+.....+++.+..-. + ..+..+|.+++++.+...- ---+..+|+.|++.+.+++..-|..+|.+
T Consensus 45 iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 45 ILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666677777777777777774311 0 2455689999999977766 44678999999998999999999999998
Q ss_pred HHhcCC
Q 004743 432 FCNNGD 437 (732)
Q Consensus 432 ~~~~g~ 437 (732)
+.+.-.
T Consensus 125 ~l~g~~ 130 (145)
T PF13762_consen 125 ALRGYF 130 (145)
T ss_pred HHcCCC
Confidence 776533
No 251
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.64 E-value=42 Score=24.99 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~ 235 (732)
|-..-+.|-+.++..++++|.+.|+..+...|..+|..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44556788999999999999999999999999988864
No 252
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=52.31 E-value=77 Score=27.64 Aligned_cols=45 Identities=11% Similarity=0.037 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
++.+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555566666666666666666666666666666554
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=51.90 E-value=34 Score=23.54 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666667766666666554
No 254
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=51.04 E-value=20 Score=33.75 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=25.2
Q ss_pred eeeCCCCCCchHHHHHHHHhCCcEEE-eCcc
Q 004743 676 LYATPTGSNDDWYWLYAAIKFKCLLV-TNDE 705 (732)
Q Consensus 676 ~~~~~~~s~DD~~~lyaa~~~~~~~v-snD~ 705 (732)
|=++.-|.+.|-++..-....+|+|| |||.
T Consensus 129 L~C~HKGTYADDClv~RV~qHkCYIVAT~D~ 159 (195)
T KOG3165|consen 129 LPCTHKGTYADDCLVQRVTQHKCYIVATNDR 159 (195)
T ss_pred cccccCCcchhhHHHHHHhhcceEEEEeccH
Confidence 45577889999999999999999987 7773
No 255
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=51.00 E-value=90 Score=27.23 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 405 ~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
++.+-++.+....+.|+...-.+.+.||-+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555555544
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=50.40 E-value=3.8e+02 Score=29.47 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=98.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh---ccCHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK---KYAFQR 370 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k---~g~~~~ 370 (732)
|-...+++...+|.+.|... |+...-. .|.+.- ...-++-+ .|+.++
T Consensus 151 yRdiqdydamI~Lve~l~~~---p~~~~~~------------------------~~~i~~---~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEAL---PTCDVAN------------------------QHNIKF---QYAFALNRRNKPGDREK 200 (374)
T ss_pred hhhhhhHHHHHHHHHHhhcc---Cccchhc------------------------chHHHH---HHHHHHhhcccCCCHHH
Confidence 77888899999999999775 3221110 001100 02234455 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hH-
Q 004743 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMS---------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD-VD- 439 (732)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~---------~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~-~~- 439 (732)
|.+++..+....-.++.-||..+-+.|-. ....++|...+.+-- .+.||.++--.+...+...|. .+
T Consensus 201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF--e~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF--EIEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH--cCCccccchHHHHHHHHHcCCcccc
Confidence 99999997766667888888887776543 223556776665432 234554332222222233332 22
Q ss_pred --HHHHHH----HHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 440 --KACSVE----EHMLEHGV---YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 --~A~~l~----~~M~~~gv---~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+..++- ....++|. ..|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222322 22223443 356667789999999999999999999999865
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.09 E-value=1.8e+02 Score=32.65 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHh
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMS 399 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~ 399 (732)
+..+.++++...|.+.++..++++|..+=. ..|.-+||.++-.+++
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 335578899999999999999999887544 4889999987776665
No 258
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=49.73 E-value=2.8e+02 Score=29.28 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=79.0
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g---~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
|...|-- |=..|...|+.+.|..-|.+-.+-- .+|...+..+-.++.... .-.++.++|+++.+.. .-|+++-.
T Consensus 155 d~egW~~-Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDL-LGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHH-HHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 3444545 7789999999999999998877631 345556666666555432 3458999999988762 23566666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
-|=..+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 67778999999999999999999764 44445555554
No 259
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.69 E-value=1.5e+02 Score=32.76 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHH
Q 004743 373 EIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEH 447 (732)
Q Consensus 373 ~lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (732)
++++.+.+.|..|+... -.+.+...+..|+.+-+..+ .+.|..++. .-++ .+...+..|+.+ +.+.
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~ 186 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKM 186 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHH
Confidence 34444445555544321 12334444556665443333 334443332 2223 333344555543 3344
Q ss_pred HHHCCCCCCHHHH---HHHHHHHHhcCChHHHHHH
Q 004743 448 MLEHGVYPEEPEL---EALLRVSVEAGKGDRVYYL 479 (732)
Q Consensus 448 M~~~gv~pd~~ty---~~Li~~~~~~g~~~~A~~l 479 (732)
+.+.|..|+...- .+++...+..|+.+-+.-+
T Consensus 187 Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L 221 (413)
T PHA02875 187 LLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221 (413)
T ss_pred HHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence 4556665554331 2444444555655444333
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=49.36 E-value=1e+02 Score=28.61 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=32.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
.++...+.|+-|.-.++..++...+ .++....-.+-.+|.+.|+..+|.+++.+--+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4566666666666666666655422 45555555666666666666666666666555554
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.70 E-value=2.6e+02 Score=29.12 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCh-hhHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYG 426 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g----i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~-~ty~ 426 (732)
-|+. -++. .+.|++..|..-|....... ..|| .+=-|-.++...|+.++|-.+|..+.+. +-.|.. ..+-
T Consensus 144 ~Y~~-A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNA-ALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHH-HHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 5777 4454 47888999999999998763 2243 3445888999999999999999998875 222222 3444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
-|-....+.|+.++|..+|++..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555677889999999999998865
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=48.45 E-value=1.6e+02 Score=33.31 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=98.7
Q ss_pred HHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 200 MCSKRGDVMGAIRLYDK-AQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~-M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
...-+++++++.++... -.-..++ ..-.+.+++-+- +.|..+.|+++.. +-..+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~----------~~G~~e~AL~~~~-------D~~~r------ 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLE----------KKGYPELALQFVT-------DPDHR------ 324 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHH----------HTT-HHHHHHHSS--------HHHH------
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHH----------HCCCHHHHHhhcC-------ChHHH------
Confidence 34457888887777642 1112222 444777777777 7788999998873 11111
Q ss_pred cccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHH
Q 004743 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~l 358 (732)
|.. ..+.|+++.|.++-++. .+...|.. |
T Consensus 325 --FeL----------Al~lg~L~~A~~~a~~~--------------------------------------~~~~~W~~-L 353 (443)
T PF04053_consen 325 --FEL----------ALQLGNLDIALEIAKEL--------------------------------------DDPEKWKQ-L 353 (443)
T ss_dssp --HHH----------HHHCT-HHHHHHHCCCC--------------------------------------STHHHHHH-H
T ss_pred --hHH----------HHhcCCHHHHHHHHHhc--------------------------------------CcHHHHHH-H
Confidence 111 44568888887643211 13335556 7
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
=+...+.|+++-|.+.|.+... |..|+=.|...|+.+.-.++.+.-...|- +|....++.-.|++
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-H
T ss_pred HHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCH
Confidence 7888899999999999998653 78888899999999888888877776654 67788888888999
Q ss_pred HHHHHHHHH
Q 004743 439 DKACSVEEH 447 (732)
Q Consensus 439 ~~A~~l~~~ 447 (732)
+++.+++.+
T Consensus 419 ~~cv~lL~~ 427 (443)
T PF04053_consen 419 EECVDLLIE 427 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 263
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=47.29 E-value=1.5e+02 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=20.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+-++.+....+.|+.....+.|++|.+..++..|.++|+-++.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555444
No 264
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.12 E-value=1.4e+02 Score=29.76 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
+.|.+.|-.+...+..-+....-+|..-|. ..+.++|..++....+. +-.+|...+.+|.+.|-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666665544444444444443 45666666666655433 23456666666666666666666654
No 265
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.94 E-value=2.4e+02 Score=31.11 Aligned_cols=80 Identities=14% Similarity=-0.007 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHH
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAK 500 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~ 500 (732)
..+++.|-.+|.+.+++.+|.+.-+..++.+ .+|+-..=-==.+|...|+++.|...|+++.+. .|+.-.... |..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4456667777888888888888877777654 344444333345677778889999999988876 555544444 554
Q ss_pred HHhc
Q 004743 501 WFNS 504 (732)
Q Consensus 501 ~~~~ 504 (732)
+.+.
T Consensus 334 l~~k 337 (397)
T KOG0543|consen 334 LKQK 337 (397)
T ss_pred HHHH
Confidence 4433
No 266
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.74 E-value=49 Score=34.93 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004743 184 SKKDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV 231 (732)
Q Consensus 184 ~~~~~p~~~t-yn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~ 231 (732)
...+.||..+ ||..|....+.||+++|+.|.++.++.|+.--..||-.
T Consensus 249 ~~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 249 SEPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CCccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4445566554 58999999999999999999999999998754555433
No 267
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=46.64 E-value=6.6e+02 Score=31.23 Aligned_cols=191 Identities=11% Similarity=0.111 Sum_probs=98.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC
Q 004743 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (732)
Q Consensus 197 lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~ 276 (732)
.+..|.+.. ...|+..|-+..+..... ...|..|=.-|+ ..-+..+|..-|+ ..-+- +-.
T Consensus 465 ~a~~~~rK~-~~~al~ali~alrld~~~-apaf~~LG~iYr----------d~~Dm~RA~kCf~-------KAFeL-Dat 524 (1238)
T KOG1127|consen 465 VALGCMRKN-SALALHALIRALRLDVSL-APAFAFLGQIYR----------DSDDMKRAKKCFD-------KAFEL-DAT 524 (1238)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHhcccch-hHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHhcC-Cch
Confidence 344444433 777777777666543222 345666666676 3336677877774 11111 111
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
+...+-.+.+. |+....+++|..+.-.--+. ....+-. ..+ ..+|
T Consensus 525 daeaaaa~adt------yae~~~we~a~~I~l~~~qk---a~a~~~k-----~nW-----------~~rG---------- 569 (1238)
T KOG1127|consen 525 DAEAAAASADT------YAEESTWEEAFEICLRAAQK---APAFACK-----ENW-----------VQRG---------- 569 (1238)
T ss_pred hhhhHHHHHHH------hhccccHHHHHHHHHHHhhh---chHHHHH-----hhh-----------hhcc----------
Confidence 55557777777 99999999998772211111 0000000 000 0000
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHh
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LSVFCN 434 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l--I~~~~~ 434 (732)
-.|-+.++...|..-|+.-.... +-|...|..|..+|...|+...|.++|.+... +.|+. +|.-. -..-|.
T Consensus 570 ---~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 570 ---PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred ---ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHH
Confidence 12334455556665555544332 33556677777777777777777777765433 23331 22211 112355
Q ss_pred cCChHHHHHHHHHHH
Q 004743 435 NGDVDKACSVEEHML 449 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~ 449 (732)
.|...+|...+....
T Consensus 643 ~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 643 NGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHHHHH
Confidence 566666666665543
No 268
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=46.61 E-value=2.7e+02 Score=34.31 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=74.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH--HHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL--SVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI--~~~~~~ 435 (732)
|=.-|+..-+..+|.+.|+...+-. .-|.-.+-.+.+.|+...++++|+.+.-.--+. -+.-...+|-+- -.|.+.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCc
Confidence 4456666667788888888776543 235667788888899999999988883221111 111112222211 124455
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
++..+|..-|+...... .-|...|..|..+|...|....|.++|.+..
T Consensus 576 ~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 66666666666555432 2355666777777777777777777776654
No 269
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.47 E-value=1.1e+02 Score=27.22 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 460 LEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
|..|+..|-..|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67788888888888888888888766
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=46.30 E-value=47 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~ 219 (732)
.+++.|-..|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 6789999999999999999999999873
No 271
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=46.20 E-value=3e+02 Score=27.09 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
.+...|++++|.+.|+++...-. +--....-.+..++-+.|+.++|...+++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45578899999999999987521 122334556778888999999999999987765
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.93 E-value=41 Score=24.11 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776654
No 273
>PHA03100 ankyrin repeat protein; Provisional
Probab=45.73 E-value=2.7e+02 Score=31.36 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH-----HHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHY--NVLLYL-----CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~ty--n~LL~~-----~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
.+.+...++.|+.+- ++.+.+.|..|+.... .+.+.. .+ ..|..+-+.-+++
T Consensus 36 ~t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~----------~~~~~~iv~~Ll~------- 94 (480)
T PHA03100 36 VLPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYN----------LTDVKEIVKLLLE------- 94 (480)
T ss_pred chhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHH----------hhchHHHHHHHHH-------
Confidence 456677788888654 4444566877654322 233333 33 3344444333332
Q ss_pred hhcccCCCC----Ccccccccccccccccccc-ccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc-cc--cCCCc
Q 004743 268 ELGDSRDMD----NNGQLDYGSSPMIDKLESN-SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-NL--ERGPD 339 (732)
Q Consensus 268 em~~~~g~~----d~~tyn~LI~~~~~~~~~~-~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~-~~--a~~~~ 339 (732)
. |.. +....+.|.-+ .. ..|..+- ++.+.+.|..++.......+.++..+ .. ...+.
T Consensus 95 ----~-ga~i~~~d~~g~tpL~~A------~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv 159 (480)
T PHA03100 95 ----Y-GANVNAPDNNGITPLLYA------ISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL 159 (480)
T ss_pred ----C-CCCCCCCCCCCCchhhHH------HhcccChHHH----HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH
Confidence 1 322 33334444444 21 5555444 44455677666554433112222222 11 23344
Q ss_pred hhhhccCCCCChhhh--HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCCHHHHHHH
Q 004743 340 DQSRKKDWSIDNQDA--DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--------LTAVGRMAMSMGDGDMAFDM 409 (732)
Q Consensus 340 ~~m~~~g~~pd~~ty--n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t--------y~~LI~~~~~~g~~~~A~~l 409 (732)
..+...|..++.... .+ .+...++.|..+ +++.+.+.|..|+... +.+.+...+..|. ...++
T Consensus 160 ~~Ll~~g~din~~d~~g~t-pL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~i 232 (480)
T PHA03100 160 KLLIDKGVDINAKNRYGYT-PLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEV 232 (480)
T ss_pred HHHHHCCCCcccccCCCCC-HHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHH
Confidence 555556655543221 12 344555566543 3344444555544221 1333444445555 11234
Q ss_pred HHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 410 VKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 410 ~~~M~~~g~~pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
++.+.+.|..++.. -+++| ...+..|+. ++++.+.+.|..|+..
T Consensus 233 v~~Ll~~g~din~~d~~g~TpL-~~A~~~~~~----~iv~~Ll~~gad~n~~ 279 (480)
T PHA03100 233 VNYLLSYGVPINIKDVYGFTPL-HYAVYNNNP----EFVKYLLDLGANPNLV 279 (480)
T ss_pred HHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCH----HHHHHHHHcCCCCCcc
Confidence 44445556554432 23333 334455554 3444555566655543
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=44.41 E-value=3.9e+02 Score=27.85 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=96.9
Q ss_pred cccCChhHHHHHHHHHHHcC--CCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHH--
Q 004743 295 NSSYRFDDLDSTFNEKENLG--QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR-- 370 (732)
Q Consensus 295 ~~~g~~~~A~~lf~eM~~~g--i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~-- 370 (732)
.+.|+++.|..++.+....- ..|+..-+- -.+.||. -.+.+.+..+++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~L--------------------------a~~~yn~-G~~l~~~~~~~~~a~ 56 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEEL--------------------------ARVCYNI-GKSLLSKKDKYEEAV 56 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHH--------------------------HHHHHHH-HHHHHHcCCChHHHH
Confidence 46789999999998876543 223322221 1233444 4455544435444
Q ss_pred -----HHHHHHH---HHhCCCCCCH-----HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 004743 371 -----GFEIYEK---MCLDEVPMNE-----ASLTAVGRMAMSMGDGD---MAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (732)
Q Consensus 371 -----A~~lf~~---M~~~gi~pd~-----~ty~~LI~~~~~~g~~~---~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~ 433 (732)
|.++++. |.. ..|+. .++..|+.+|...+..+ +|..+++.+.... |+ ...|---|..+.
T Consensus 57 ~wL~~a~~~l~~~~~~~~--~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~ 132 (278)
T PF08631_consen 57 KWLQRAYDILEKPGKMDK--LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILL 132 (278)
T ss_pred HHHHHHHHHHHhhhhccc--cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHh
Confidence 4555533 222 22333 46777888888877765 5666777775442 33 445555677777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhccCCCChh
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS---VEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~---~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+.++.+.+.+++.+|...-. -....+..++..+ .... ...|...+.++......++++
T Consensus 133 ~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 133 KSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred ccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChh
Confidence 78999999999999987632 1334455555554 3333 346666666666654455554
No 275
>PRK15331 chaperone protein SicA; Provisional
Probab=43.69 E-value=1.7e+02 Score=28.25 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=61.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (732)
+-..|++++|..+|.-+...+ |...-|..-+.+++ ..++.++|...|......+. -|...+-.+=.+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 446899999999999887653 33333544444444 45899999999987765443 222223344567888999999
Q ss_pred HHHHHHHHHhc
Q 004743 476 VYYLLHKLRTS 486 (732)
Q Consensus 476 A~~l~~~M~~~ 486 (732)
|...|.....+
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 99999988775
No 276
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.66 E-value=4.1e+02 Score=27.92 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=54.9
Q ss_pred HHHHHH-hccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 358 RLSEDA-KKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 358 lI~~~~-k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
++...| ..+..+.|.++|+++...+. ..+...-.+++....+.|..++-..+++..... ++..--..+|.++
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 455555 22346778888888777422 345555666677777777766655555554433 3566667788888
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 004743 433 CNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g 452 (732)
+...+.+...++++.....+
T Consensus 212 a~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTS
T ss_pred hccCCHHHHHHHHHHHcCCc
Confidence 77777777777777777654
No 277
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=4.1e+02 Score=27.62 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=82.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l 444 (732)
.|..++|.++++.+.+.. +-|.++|--=|-..-..|+--+|.+-+.+..+. +.-|...|.-+-..|...|++++|.--
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 467788888888888776 667777776666666677777888777776665 667888888888888888999888888
Q ss_pred HHHHHHCCCCCCHHHHH-HHHHHHH---hcCChHHHHHHHHHHHhc
Q 004743 445 EEHMLEHGVYPEEPELE-ALLRVSV---EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 445 ~~~M~~~gv~pd~~ty~-~Li~~~~---~~g~~~~A~~l~~~M~~~ 486 (732)
+++|.-. .|..+.|- .+-+.+- ...+.+-|.+++.+-.+.
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8888753 45555443 3333332 233455677777766554
No 278
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.46 E-value=22 Score=32.86 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.0
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004743 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (732)
+.|.-.+|..+|.+|.++|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44555679999999999999998 588888764
No 279
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=42.38 E-value=4.8e+02 Score=29.85 Aligned_cols=144 Identities=11% Similarity=0.012 Sum_probs=90.1
Q ss_pred hhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004743 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 327 li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (732)
.|.|.....+.++++|.- ..+++-++.+-+..-..-+-.+|.+-| -+...|-.++.+|..+ ..+.-
T Consensus 52 yisg~~~~s~~~l~d~~l-----------~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l 117 (711)
T COG1747 52 YISGIISLSKQLLDDSCL-----------VTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQL 117 (711)
T ss_pred HHHHHHHhhhccccchHH-----------HHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-Cchhh
Confidence 344444455556666643 237888888888888888888888865 5778899999999988 56677
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH--------------------HHHH----------------
Q 004743 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE--------------------HMLE---------------- 450 (732)
Q Consensus 407 ~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~--------------------~M~~---------------- 450 (732)
..+++++.+..+ |.+...--+.-+...++..++-.+|. .+.+
T Consensus 118 ~~lWer~ve~df--nDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~ki 195 (711)
T COG1747 118 YSLWERLVEYDF--NDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKI 195 (711)
T ss_pred HHHHHHHHHhcc--hhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 788887776643 33333333333333344444444443 3322
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 ---HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ---~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|...-.+.+.-+-.-|....++++|.+++..+.+.
T Consensus 196 qt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 196 QTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 122333444555556677778888888888866554
No 280
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.32 E-value=4.5e+02 Score=28.00 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=35.8
Q ss_pred ecCCCccccccCCccccccccccccccccccccccccccchhhhccccccccCcC
Q 004743 81 TRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSS 135 (732)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (732)
.+-..+++.-+.+..++.+..+. +..++.+...+|....|+-.-.|++......
T Consensus 31 f~da~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~ 84 (412)
T KOG2297|consen 31 FRDAVVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGV 84 (412)
T ss_pred HHHHHHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCc
Confidence 44556677777777777777665 4455677777888888887776666544433
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=42.23 E-value=51 Score=23.61 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|..+-.+|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666778888888889998888888776
No 282
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.62 E-value=32 Score=32.44 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=41.0
Q ss_pred eecCCCccCcccccc---------------ccccCCHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHhhcC
Q 004743 548 TVGGDALCKCCGEKL---------------AIIDLDPIETEKFAESVASIAIKRE-RNSSFQKFQKWLDYYG 603 (732)
Q Consensus 548 ~v~~~G~C~~c~~~L---------------~~i~l~~~e~~~l~~~i~~~a~~~~-~~~~~~~F~~~l~~~~ 603 (732)
+.....+|..||... +.-.|+++|.+.|.+.+-.+..++- ++.+.-+|++++.+.+
T Consensus 64 ~~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~g 135 (158)
T PF10083_consen 64 HYEAPSYCHNCGKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKAG 135 (158)
T ss_pred CCCCChhHHhCCCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHHh
Confidence 334567999998642 2335888999999999888877642 4466788999998864
No 283
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=41.19 E-value=79 Score=26.14 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=23.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (732)
.+...+..|+. ++++.+.+.|..|+.. -+++ +...+..|+. ++++.+.+.|..++
T Consensus 29 ~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNL----EIVKLLLENGADINSQDKNGNTA-LHYAAENGNL----EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBH-HHHHHHTTHH----HHHHHHHHTTT-TT
T ss_pred HHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCH-HHHHHHcCCH----HHHHHHHHcCCCCC
Confidence 34444455553 3344444455555543 2233 3334444543 23444445555444
No 284
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.48 E-value=1.7e+02 Score=29.55 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRV 466 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~ 466 (732)
.+.-|+.+.+.+.+.+|+.+..+-++. -+-|.-+-..+++-||-.|++++|..-++-.-.. ...+-..+|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 334455555566666666665554443 1223334445566666666666665444333211 223344455555543
No 285
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.87 E-value=5.4e+02 Score=28.22 Aligned_cols=203 Identities=11% Similarity=-0.060 Sum_probs=105.4
Q ss_pred HHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcccCCcccC
Q 004743 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY---HYNVLLYLCSSAAVGVVKPA 247 (732)
Q Consensus 171 ~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~---tyn~LL~~~~~~~~~~~~~~ 247 (732)
++++.+.+.|..++.... ...+.|..+++.|+.+ +.+.+.+.|..|+.. ..+.|. ..+
T Consensus 16 ~iv~~Ll~~g~~~n~~~~----~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~-~A~---------- 76 (413)
T PHA02875 16 DIARRLLDIGINPNFEIY----DGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELH-DAV---------- 76 (413)
T ss_pred HHHHHHHHCCCCCCccCC----CCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHH-HHH----------
Confidence 445555566765554221 1245566777788875 444555667666532 233343 333
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCC--Ccc--ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNG--QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~--tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
+.|+.+.+..+++ . |.. +.. .-++.+.. .+..|+.+ +++.+.+.|..|+.....
T Consensus 77 ~~g~~~~v~~Ll~-----------~-~~~~~~~~~~~g~tpL~~------A~~~~~~~----iv~~Ll~~gad~~~~~~~ 134 (413)
T PHA02875 77 EEGDVKAVEELLD-----------L-GKFADDVFYKDGMTPLHL------ATILKKLD----IMKLLIARGADPDIPNTD 134 (413)
T ss_pred HCCCHHHHHHHHH-----------c-CCcccccccCCCCCHHHH------HHHhCCHH----HHHHHHhCCCCCCCCCCC
Confidence 4577776666653 1 111 110 11223333 34555543 444555667766654332
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSM 400 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~ 400 (732)
| .+ .+...+..|+.+-+..+ .+.|..++. .-++.| ...+..
T Consensus 135 ----------------------g--------~t-pLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~TpL-~~A~~~ 178 (413)
T PHA02875 135 ----------------------K--------FS-PLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCTPL-IIAMAK 178 (413)
T ss_pred ----------------------C--------CC-HHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCCHH-HHHHHc
Confidence 0 12 44555667776544443 345544332 233333 344556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSY---GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty---~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
|+.+ +++.+.+.|..|+.... .+++...+..|+.+ +.+.+.+.|..++..
T Consensus 179 g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 179 GDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred CCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 7655 44555667877765432 35666566777764 455566788877754
No 286
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=39.21 E-value=7.9 Score=30.67 Aligned_cols=36 Identities=25% Similarity=0.598 Sum_probs=24.8
Q ss_pred HHHHHHhCCcEEEeCcccccccccccCCchhhhhhhcccc
Q 004743 689 WLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQA 728 (732)
Q Consensus 689 ~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~ 728 (732)
|.-+|-...++=+|-|+=|.|++-+ -+.-||.+||-
T Consensus 20 Wy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q~ 55 (68)
T PF06844_consen 20 WYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQT 55 (68)
T ss_dssp HHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH--
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHCC
Confidence 5556667788999999999999977 79999999995
No 287
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.59 E-value=98 Score=23.01 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=11.9
Q ss_pred hcCChHHHHHHHHHHHhccCCCChhHH
Q 004743 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~~~~~~p~t~ 495 (732)
+.|..+++..++++|++.++.++|..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHH
Confidence 334444444444444444444444433
No 288
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.74 E-value=2.6e+02 Score=27.64 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHH-HHHhcCC--hHHHHH
Q 004743 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS-VFCNNGD--VDKACS 443 (732)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~lI~-~~~~~g~--~~~A~~ 443 (732)
+++.++-.++. -++...-...+.|++++|.+-++++.+. .++--...|.-+.. ++|.++. +-+|.-
T Consensus 20 EE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 55666666554 3555555667788888888888777543 23333455666666 6777764 445555
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHH--------------HhcCChHHHHHHHHHHHh
Q 004743 444 VEEHMLEHGVYPEEP----ELEALLRVS--------------VEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 444 l~~~M~~~gv~pd~~----ty~~Li~~~--------------~~~g~~~~A~~l~~~M~~ 485 (732)
++.-.... ..|... .+-..|.|. .+.|++++|.++++-|.+
T Consensus 91 l~~~l~~~-~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDG-RLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcC-CCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555433 233322 112223333 357888888888888754
No 289
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=36.99 E-value=59 Score=30.16 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHcCcee-eCCCC------CCchHHHHHHHHhCCc-EEEeCcc
Q 004743 665 ALIEKWKNADALY-ATPTG------SNDDWYWLYAAIKFKC-LLVTNDE 705 (732)
Q Consensus 665 ~~~~~~~~~~~~~-~~~~~------s~DD~~~lyaa~~~~~-~~vsnD~ 705 (732)
..+.-+.+.+.++ .+|.. .-||.+||-.|+..++ ++||-|.
T Consensus 65 ~~v~~l~~~~~~i~I~p~~~f~~~RDp~Dn~~L~~A~~~kA~~lvTgD~ 113 (142)
T COG1569 65 ELVLVLFESVSLIAINPLEKFNICRDPKDNKLLALAYESKADYLVTGDQ 113 (142)
T ss_pred HHHHHHHHhheeEeecccccccccCCchHHHHHHHHHhccCCEEEEcch
Confidence 3445555666666 44443 4689999999999887 8999987
No 290
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=36.63 E-value=3.7e+02 Score=30.66 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 431 VFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
++-+.|+.++|.+.|.+|.+. ...-+......||.++...+...++..++.+-.+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 334557777777777777643 2222344556677777777777777777777643
No 291
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.62 E-value=6.4e+02 Score=28.11 Aligned_cols=278 Identities=10% Similarity=-0.009 Sum_probs=156.5
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCS 237 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~~~~ 237 (732)
-.++...|-..+-.+.. +...+-|+.....+-+.+...|+.++|...|+...-. .|+ ...|..||.
T Consensus 208 ~~~~hs~a~~t~l~le~-----~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~--- 277 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHD-----NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG--- 277 (564)
T ss_pred HhcccchhhhHHHHHHh-----hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH---
Confidence 44555556555554422 2234556678899999999999999999999987643 232 223444442
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|+.++...+...+- ...+. ...-|-.-... +-...++..|+.+-+.-.+. .|
T Consensus 278 ----------~eg~~e~~~~L~~~Lf----~~~~~----ta~~wfV~~~~------l~~~K~~~rAL~~~eK~I~~--~~ 331 (564)
T KOG1174|consen 278 ----------QEGGCEQDSALMDYLF----AKVKY----TASHWFVHAQL------LYDEKKFERALNFVEKCIDS--EP 331 (564)
T ss_pred ----------hccCHhhHHHHHHHHH----hhhhc----chhhhhhhhhh------hhhhhhHHHHHHHHHHHhcc--Cc
Confidence 3444444443332000 00000 00001111111 22345566666555443322 12
Q ss_pred Cccccchhhhhhcccc-------ccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 004743 318 NGHMKLNSQLLDGRSN-------LERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (732)
Q Consensus 318 d~~ty~~~~li~~~~~-------~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (732)
+.+- +.++.|... .|.--|... ..+.| +..+|-. |+++|--.|.+.+|.-+-++-... ++-+..+
T Consensus 332 r~~~---alilKG~lL~~~~R~~~A~IaFR~A--q~Lap~rL~~Y~G-L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~ 404 (564)
T KOG1174|consen 332 RNHE---ALILKGRLLIALERHTQAVIAFRTA--QMLAPYRLEIYRG-LFHSYLAQKRFKEANALANWTIRL-FQNSARS 404 (564)
T ss_pred ccch---HHHhccHHHHhccchHHHHHHHHHH--HhcchhhHHHHHH-HHHHHHhhchHHHHHHHHHHHHHH-hhcchhh
Confidence 2111 123333321 111122221 12333 5567888 999999999999998776554332 2234455
Q ss_pred HHHH-HHHHHhcC-CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 390 LTAV-GRMAMSMG-DGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 390 y~~L-I~~~~~~g-~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
.+.+ -..|.-.. --++|.++++.-. .+.|+- -.-+.+-.-+...|..+.+..+++.-... .||....+.|-+.
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDI 480 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHH
Confidence 5444 23333322 2356777776533 345662 33444555667789999999999887643 6999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 004743 467 SVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.....+.+|++.|..-.+.
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999876543
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=35.87 E-value=3e+02 Score=32.58 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=15.3
Q ss_pred hhhhhccceeeeeeccCCCCce
Q 004743 8 NTLQQQNQLFSLTLCKSSPPTL 29 (732)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (732)
|||......|-+-+|.|--.||
T Consensus 406 s~le~~~~~~~l~LCNSIGT~l 427 (1189)
T KOG2041|consen 406 STLENRSRVYFLQLCNSIGTSL 427 (1189)
T ss_pred hhhhcccceEEEeeecccCCcC
Confidence 6677777788888887754443
No 293
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=35.04 E-value=7.2e+02 Score=28.22 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-C-----cccc
Q 004743 208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-N-----NGQL 281 (732)
Q Consensus 208 ~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d-----~~ty 281 (732)
.-..-+|.-|..- ++| .+..+|...+ =.|+-+.+++.+. +-.+..++. + ...|
T Consensus 174 ~~G~G~f~L~lSl-LPp---~~~kll~~vG----------F~gdR~~GL~~L~-------~~~~~~~i~~~la~L~LL~y 232 (468)
T PF10300_consen 174 YFGFGLFNLVLSL-LPP---KVLKLLSFVG----------FSGDRELGLRLLW-------EASKSENIRSPLAALVLLWY 232 (468)
T ss_pred HHHHHHHHHHHHh-CCH---HHHHHHhhcC----------cCCcHHHHHHHHH-------HHhccCCcchHHHHHHHHHH
Confidence 3344555555532 233 3455555555 4566666777664 222222444 1 1225
Q ss_pred cccccccccccccc----ccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 282 DYGSSPMIDKLESN----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 282 n~LI~~~~~~~~~~----~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
+.++.. ++ .....+.|.+++++|.++ -|+..-|. -.
T Consensus 233 ~~~~~~------~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl--------------------------------~~ 272 (468)
T PF10300_consen 233 HLVVPS------FLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL--------------------------------FF 272 (468)
T ss_pred HHHHHH------HcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH--------------------------------HH
Confidence 555555 33 345678899999998876 46666552 11
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP---MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~---pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~-~~ 433 (732)
-=..+...|++++|.+.|++....... .....|==+.-.++-.+++++|.+.|..+.+..- -...+|.-+..+ +.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 113455678999999999975532111 1122333344567789999999999999987632 233344433332 33
Q ss_pred hcCCh-------HHHHHHHHHHH
Q 004743 434 NNGDV-------DKACSVEEHML 449 (732)
Q Consensus 434 ~~g~~-------~~A~~l~~~M~ 449 (732)
..|+. ++|.++|.+..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHH
Confidence 45666 77777777654
No 294
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.05 E-value=68 Score=33.87 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 383 VPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 383 i~pd~~t-y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
+.||..+ |+..|+...+.||+++|+.|++|-++.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3345443 5677777788888888888888877777654444443
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.86 E-value=4.2e+02 Score=28.63 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=72.8
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHH--HHHHhcCChHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG--PAL--SVFCNNGDVDK 440 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~--~lI--~~~~~~g~~~~ 440 (732)
.|+..+|...++++... .+.|...++-.=++|.-.|+.+.-...++++.-. -.||.-.|+ .=| -++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45666677777776654 4667777777777888888887777777776543 234443332 222 23345677788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
|++.-++-.+-+ .-|.-.-.++-..+--.|+..++.+++.+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 877766655443 334445556666666677777777776553
No 296
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.75 E-value=68 Score=23.52 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555553
No 297
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=33.49 E-value=4e+02 Score=24.82 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=22.4
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (732)
+..|+++.|++.|.+-..- .+-+...||.=..++--.|+.++|++=+++-
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555555444332 1223344554444444455555544444443
No 298
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.86 E-value=2.2e+02 Score=28.92 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=55.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~lI~~ 431 (732)
.|+.+.+.+.+++|+.+.++=.+.. +-|.-+=..|+..||-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 5678888999999999987766553 456777888999999999999998776654432 244557788887763
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.31 E-value=8.9e+02 Score=28.47 Aligned_cols=226 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCC---------CHHHHHHH
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV--MGAIRLYDKAQREGIKL---------GQYHYNVL 232 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~--~~A~~lf~~M~~~Gi~p---------d~~tyn~L 232 (732)
++...|.+.++.+...-..+.. |-+.++-.++.+....... +++++..+++......+ -..+|..+
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d---~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~ll 229 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGD---PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLL 229 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (732)
+..|+ +...|+++.+...++++.
T Consensus 230 l~l~~--------------------------------------------------------~l~~~~~~~~~~~L~~lq- 252 (608)
T PF10345_consen 230 LDLCC--------------------------------------------------------SLQQGDVKNSKQKLKQLQ- 252 (608)
T ss_pred HHHHH--------------------------------------------------------HHHcCCHHHHHHHHHHHH-
Q ss_pred cCCCCCccccchhhhhhcccccc-------------------------CCCchhhhccCCCCChhhhHHHHHHHHHhccC
Q 004743 313 LGQFSNGHMKLNSQLLDGRSNLE-------------------------RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA 367 (732)
Q Consensus 313 ~gi~Pd~~ty~~~~li~~~~~~a-------------------------~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~ 367 (732)
..++...... ..+|+-+....+..=+...+. +...+....+
T Consensus 253 -------------~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~-l~~~~~~~~~ 318 (608)
T PF10345_consen 253 -------------QFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSG-LHNLYKGSMD 318 (608)
T ss_pred -------------HHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHH-HHHhhccCch
Q ss_pred -----HHHHHHHHHHHH---hCCCCCCHHHHHHHHH---------------HHHhcCCHHHHHHHHHHHHHcC------C
Q 004743 368 -----FQRGFEIYEKMC---LDEVPMNEASLTAVGR---------------MAMSMGDGDMAFDMVKRMKSLG------I 418 (732)
Q Consensus 368 -----~~~A~~lf~~M~---~~gi~pd~~ty~~LI~---------------~~~~~g~~~~A~~l~~~M~~~g------~ 418 (732)
+++|.+..++.. .....-....++.-+. ..+-.+++..|...+++|.... +
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 398 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKL 398 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccch
Q ss_pred CCChhhHHHHHHHHHhc--CChHHHHHHHH--------HHHHCCCCCCHHHHHHH
Q 004743 419 NPRLRSYGPALSVFCNN--GDVDKACSVEE--------HMLEHGVYPEEPELEAL 463 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~~--g~~~~A~~l~~--------~M~~~gv~pd~~ty~~L 463 (732)
......+...+.|.... |+++.|...|. .....+...+...+..|
T Consensus 399 ~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 399 YESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
No 300
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.20 E-value=3e+02 Score=27.44 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=57.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChH
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
.+.|+ ++|.+.|-.+...+..-+...-- .|..|--..+.++|..++.+..+. +-.+|...+.+|...|-+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 57888888888877654444444 444555578899999998887653 33788899999999999999998
Q ss_pred HHHH
Q 004743 475 RVYY 478 (732)
Q Consensus 475 ~A~~ 478 (732)
.|+-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8863
No 301
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=31.90 E-value=4.3e+02 Score=24.65 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=62.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHH---HHHHhcC
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALL---RVSVEAG 471 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li---~~~~~~g 471 (732)
+++..|+++.|++.|.+-... ++-+...||.--.++--.|+.++|++=+++..+. |-+ +.....+.+ ..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467899999999999987655 4456789999999999999999999988877654 333 332222222 2356778
Q ss_pred ChHHHHHHHHHH
Q 004743 472 KGDRVYYLLHKL 483 (732)
Q Consensus 472 ~~~~A~~l~~~M 483 (732)
+.|.|..=|..-
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888777766543
No 302
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=6.8e+02 Score=27.64 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=81.9
Q ss_pred HHHHhccCHHHHHHHHHHHHh-----CCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCL-----DEVP---------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~-----~gi~---------pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
+.|.|.|++..|...|+.... .+.. .-..+++.|.-+|.+.+++.+|.+.-+.....+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467888888888888776432 1111 224577888889999999999998887766552 2333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC-hHHHHHHHHHHHhc
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE-AGK-GDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~-~g~-~~~A~~l~~~M~~~ 486 (732)
---=.+|...|+++.|+..|+.+.+. .|+-..-..=|..|.+ ... .++..++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345677789999999999999864 5776655544444432 222 33456777777554
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=31.52 E-value=73 Score=20.03 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVK 411 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~ 411 (732)
.+-..+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 304
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=30.61 E-value=1e+03 Score=28.64 Aligned_cols=284 Identities=9% Similarity=-0.051 Sum_probs=145.0
Q ss_pred CCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 004743 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (732)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~ 244 (732)
...++.+.+++-.+.+ +..|++.-|-++= |+..++++.|++...+..+-+-.-+...|..|.-.++
T Consensus 459 ~h~kslqale~av~~d-----~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS------- 524 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFD-----PTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS------- 524 (799)
T ss_pred HHHHHHHHHHHHHhcC-----CCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-------
Confidence 3445666676664432 2456655555543 5667899999999999998766667777777766666
Q ss_pred ccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHc-----------
Q 004743 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL----------- 313 (732)
Q Consensus 245 ~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~----------- 313 (732)
-.+++.+|+.+.+.- -+|..++.+..+ .=|.- --.-++.++|......|...
T Consensus 525 ---a~kr~~~Al~vvd~a---l~E~~~N~~l~~-----~~~~i------~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~ 587 (799)
T KOG4162|consen 525 ---AQKRLKEALDVVDAA---LEEFGDNHVLMD-----GKIHI------ELTFNDREEALDTCIHKLALWEAEYGVQQTL 587 (799)
T ss_pred ---hhhhhHHHHHHHHHH---HHHhhhhhhhch-----hhhhh------hhhcccHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 557788888888610 011111111000 00000 11233344443333322210
Q ss_pred ------C------CCCCcc-----ccc-hhhhhhccccccCCCchhhhccCCCCChh-------hhHHHHHHHHHhccCH
Q 004743 314 ------G------QFSNGH-----MKL-NSQLLDGRSNLERGPDDQSRKKDWSIDNQ-------DADEIRLSEDAKKYAF 368 (732)
Q Consensus 314 ------g------i~Pd~~-----ty~-~~~li~~~~~~a~~~~~~m~~~g~~pd~~-------tyn~~lI~~~~k~g~~ 368 (732)
+ ..+... ++. ...++..-...+. .-..|...-..|+.. ..+...-+.+.+.+..
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~-se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG-SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc-cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 0 111110 010 0011110000000 000012112222211 1112244666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHH--HH
Q 004743 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACS--VE 445 (732)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~--l~ 445 (732)
++|...+.+....- +-....|.-.=..+-..|..++|.+.|..-.. +.|+ +.+-+++=..+.+.|+-.-|.. ++
T Consensus 667 ~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 667 DEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 77776666654431 22333344333444556777777777765433 4455 3455666667777777666666 77
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.++.+.+ .-+...|-.|=..+-+.|+.++|.+.|.--.
T Consensus 744 ~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 744 SDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 7777665 3455667777777777888888877776543
No 305
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=30.49 E-value=41 Score=29.91 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCchHHHHHHHHhCCc-EEEeCc
Q 004743 683 SNDDWYWLYAAIKFKC-LLVTND 704 (732)
Q Consensus 683 s~DD~~~lyaa~~~~~-~~vsnD 704 (732)
.-||..++-+|+..+| +|||+|
T Consensus 86 D~~D~~~l~~A~~~~ad~iVT~D 108 (114)
T TIGR00305 86 DKKDNKFLNTAYASKANALITGD 108 (114)
T ss_pred CchhHHHHHHHHhcCCCEEEECC
Confidence 5578999999999887 999999
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=30.37 E-value=6.9e+02 Score=26.58 Aligned_cols=41 Identities=7% Similarity=-0.085 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHh
Q 004743 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTF 259 (732)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~ 259 (732)
-..|+++|.-+....-+ .++=+.+|.++- ...+..+|...|
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lw----------pe~D~kka~s~l 189 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALW----------PEKDEKKASSLL 189 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHc----------cccchhhHHHHH
Confidence 36899999998865323 245566677776 555555655555
No 307
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=30.14 E-value=3.9e+02 Score=23.66 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=21.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
...|++++|..+.+.+ +.||+..|-+|-. -+.|..+++..-+.+|..+|
T Consensus 50 mNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 50 MNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555544433 3455554444322 23344444444444444443
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=29.52 E-value=1.3e+03 Score=29.41 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t--y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (732)
+.+|-.+|+|++|+.+..+|... -|... --.|+.-+...++.-+|-++..+-... +.--+..||+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555666677766666655422 11111 133555555566665555555543321 123344455555
Q ss_pred ChHHHHHHHH
Q 004743 472 KGDRVYYLLH 481 (732)
Q Consensus 472 ~~~~A~~l~~ 481 (732)
.+++|.++-.
T Consensus 1041 ~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1041 EWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 309
>PHA03100 ankyrin repeat protein; Provisional
Probab=28.81 E-value=2.1e+02 Score=32.21 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=82.4
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhc------cccccCCCchhhhccCCCCChhhh--HHHHHHHHH--
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDG------RSNLERGPDDQSRKKDWSIDNQDA--DEIRLSEDA-- 363 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~------~~~~a~~~~~~m~~~g~~pd~~ty--n~~lI~~~~-- 363 (732)
.++.|+.+- ++.+.+.|..|+.........++. .......+...+...|..++.... .+ .+...+
T Consensus 42 A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-pL~~A~~~ 116 (480)
T PHA03100 42 AKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT-PLLYAISK 116 (480)
T ss_pred hhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc-hhhHHHhc
Confidence 445555544 444556787777654431122221 112222244445555555443221 22 233333
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChH
Q 004743 364 KKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVD 439 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~t--y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~~~g~~~ 439 (732)
..|.. ++++.+.+.|..++... -.+.+..++..|. .-.++++.+.+.|..++.... .+.+...+..|+.+
T Consensus 117 ~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence 55554 44555555676654332 1245555566662 113345555667766654322 34566667777654
Q ss_pred HHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCC--hHHHHHHHH
Q 004743 440 KACSVEEHMLEHGVYPEEPE--------LEALLRVSVEAGK--GDRVYYLLH 481 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~t--------y~~Li~~~~~~g~--~~~A~~l~~ 481 (732)
+.+.+.+.|..|+... +.+.+...+..|. .+-+..+++
T Consensus 191 ----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~ 238 (480)
T PHA03100 191 ----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS 238 (480)
T ss_pred ----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence 4444455666555321 1344445566666 544444433
No 310
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.76 E-value=2e+02 Score=28.12 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+...|..++.++...|+.++|.+++.++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466666666666666666666666666666554
No 311
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.61 E-value=4.7e+02 Score=29.91 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=78.3
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVD 439 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~ 439 (732)
+.+..|+++.|..+|-+-..-. ++|-+.|+.=..+|++.|++++|.+=-.+-+ .+.|+. --|+-.=.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccHH
Confidence 4567899999999998877654 4588999999999999999999887555544 456774 57777777778889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
+|..-|.+=++.. .-|...++-|.+++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999998866543 23444555555555
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=28.32 E-value=4.5e+02 Score=27.69 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
..=|.+++..+++.++....-+--.. .++|.+ .--.|--|.+.|+...+.++-......--.-+...|.++...|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 33477888888888876654433222 344443 33455568899998888888887776533344455777666664
Q ss_pred -----hcCChHHHHHHH
Q 004743 469 -----EAGKGDRVYYLL 480 (732)
Q Consensus 469 -----~~g~~~~A~~l~ 480 (732)
=.|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 469999999887
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=27.96 E-value=7.6e+02 Score=28.00 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=82.0
Q ss_pred HHHHhccCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 360 SEDAKKYAFQRG-FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 360 ~~~~k~g~~~~A-~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
.--...|++-.| .++|+-++...-.|+-+-.-+.| +...|+++.+...+...... +.....+--+++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 334445665444 56777777776678777666655 45789999999998775543 445667778889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
+.|+.+-+-|....++-.++.--+-. ..-.-|.+|+++-.++++-
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~-sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAG-SADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecc-cHHHHhHHHHHHHHHHHHh
Confidence 99999999998777653322211111 1234466788887777764
No 314
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.60 E-value=5.9e+02 Score=27.54 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=55.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChh-hHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD---EVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLR-SYG 426 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~-ty~ 426 (732)
++...-+.++.++|.++++++.+. --.|+.+.|. .+.+.+...|+..++.+++.+.++ .|+.|++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 444455556888899999888864 2346777664 445555568888899998888877 57877654 444
Q ss_pred HHHHHHH-hcCChHHHH
Q 004743 427 PALSVFC-NNGDVDKAC 442 (732)
Q Consensus 427 ~lI~~~~-~~g~~~~A~ 442 (732)
.+=.-|. +.|++...+
T Consensus 161 ~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 4444333 346665443
No 315
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.31 E-value=2.2e+02 Score=27.81 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...+.......+.+......+...+. ...|+..+|..++.++...|+.++|.++..++..-
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444667776666666655443 56799999999999999999999999999988753
No 316
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.23 E-value=1e+03 Score=27.42 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------------------------HHHHhcCCHHHHHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG-------------------------RMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI-------------------------~~~~~~g~~~~A~~l~~~M~ 414 (732)
.+|.+.++.+.|...|.+-...-..||..+=..-. ..+.+.|++..|.+.+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35666667777777777655443334332211111 13445666666666666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 415 ~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
+.. +-|.+.|+..-.+|.+.|.+..|..=-+...
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 553 3345666666666666666666655444433
No 317
>PRK11906 transcriptional regulator; Provisional
Probab=27.14 E-value=9.2e+02 Score=27.28 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=71.0
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHH
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~lI~~~~~~g~~~~A~ 442 (732)
....+|.++-+.-.+.+ +-|......+-.++...|+.+.|..+|++-.. +.||. ..|..++ ++-+|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~--~~~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALV--HFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHH--HHHcCCHHHHH
Confidence 34566777776666654 34666666666666778889999999987654 45663 3444444 34578999999
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 443 SVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 443 ~l~~~M~~-~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
+.+++..+ .-.+.-.......|+.|+.++ ++.|..++-+
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 98888443 222233344455566777766 6667666644
No 318
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=26.49 E-value=1.7e+02 Score=19.11 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~ 220 (732)
.+|..+-..|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788888999999999999999998763
No 319
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=26.08 E-value=2.6e+02 Score=31.00 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHH------Hhh---ccchhHHHHHHHHhhcCCccccccccceecccCCCCChhhHHHHHHHHHhhCCC
Q 004743 570 IETEKFAESVASIA------IKR---ERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPS 640 (732)
Q Consensus 570 ~e~~~l~~~i~~~a------~~~---~~~~~~~~F~~~l~~~~pyD~v~d~~nv~~~~~~~~~~~~i~~vv~~l~~~~~~ 640 (732)
+++..+.+.|.... ..+ ..++.++.+-+.++- ..-..|-||-..- ..-+.-.-+.+...+..+++
T Consensus 393 edYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel-~~ktsl~d~~fs~-~kLStGQkKRlAll~AllEe---- 466 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLEL-AHKTSLNDGRFSN-LKLSTGQKKRLALLLALLEE---- 466 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHH-hhhhcccCCcccc-cccccchHHHHHHHHHHHhh----
Confidence 66777766664322 112 234555544444432 1233444443222 11111122356666666654
Q ss_pred CCccEEEeccccccCCCCCChh-hHHHHHHHHHcCc-eeeCCCCCCchHHHHHHH
Q 004743 641 KKWPLIVLHNRRITGHKMDQPV-NRALIEKWKNADA-LYATPTGSNDDWYWLYAA 693 (732)
Q Consensus 641 ~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~s~DD~~~lyaa 693 (732)
+|++|+-..--.+.+...+. -+.++-.+++.|. +|. .|+||+|+..|-
T Consensus 467 --R~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~a---IsHDd~YF~~AD 516 (546)
T COG4615 467 --RDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFA---ISHDDHYFIHAD 516 (546)
T ss_pred --CCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEE---EecCchhhhhHH
Confidence 58999865533332221111 3555666788876 553 599999998875
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.91 E-value=1.1e+03 Score=27.42 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=75.9
Q ss_pred HHH-HHhccCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCChhhH
Q 004743 359 LSE-DAKKYAFQRGFEIYEKMCL-------DEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 359 I~~-~~k~g~~~~A~~lf~~M~~-------~gi~pd~~ty~~LI~~~~~~g-----~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
..+ ++...+++.|+..|+...+ .|.+ ....-|-.+|.+.. +.+.|..++..-.+.|. |+...+
T Consensus 255 ~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~ 330 (552)
T KOG1550|consen 255 LAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYL 330 (552)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHH
Confidence 344 6778899999999999877 5522 24555555666533 56678998888777776 454433
Q ss_pred HHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhc
Q 004743 426 GPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVS--VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~~~~~-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~--~~~g~~~~A~~l~~~M~~~ 486 (732)
-..+.-... ..+...|.++|...-..|..+ ..-+-+++-.. .-..+...|..++++-.+.
T Consensus 331 lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 331 LGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 333332222 346789999999888877432 22222222111 1233567888888887777
No 321
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=25.61 E-value=5.3e+02 Score=23.71 Aligned_cols=126 Identities=20% Similarity=0.185 Sum_probs=85.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~-~~~~~ 435 (732)
....+...+.+..+...+...... ........+..+...+...+....+.+.+.........+. ........ .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHc
Confidence 556777778888888888777653 3345566777777777788888888888888776543331 22222222 68888
Q ss_pred CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p----d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|+.+.|...+..... ..| ....+......+...++.+++...+.+....
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 999999999988854 233 3344444444466778888888888887766
No 322
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.36 E-value=7e+02 Score=26.22 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=70.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
++..+-+...+.+..+.+..|+. ...--..|+.+...|++..|.+++.+..+. +. ....|++ +..+ ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c-~~~L--~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSC-VRHL--SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchH-HHHH--hHH
Confidence 66777777777777777777763 345566788888999999999999987754 11 1112221 1111 123
Q ss_pred hHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 438 VDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 438 ~~~A~~l~~~M~~~-----gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
+++-....+++.+. -..-|...|..++.||.--|+...+.+=+
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33334444443332 12578899999999999888776654433
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.99 E-value=1.4e+02 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3456666677777777776666443
No 324
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=23.22 E-value=8.4e+02 Score=26.07 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=37.8
Q ss_pred hcCCHHHHHHHH-HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 399 SMGDGDMAFDMV-KRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 399 ~~g~~~~A~~l~-~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
....+++..... ++|++.++ |+......+-++....+++.+-.++..+-. .-...+|.-|+.++|..|+.+-.+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qa----lrhlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQA----LRHLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHH----HHHHHhhhHHHHHHhcCChHHHHH
Confidence 333444544433 45666655 665433333333333444444333322211 113457889999999999876543
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=5.9e+02 Score=29.79 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
..-|.. |=++..+.+++..|.+.|..-+ -|..|+-.+...|+.+....+-..-++.|. .|....
T Consensus 666 ~~Kw~~-Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 666 EVKWRQ-LGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred hHHHHH-HHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 344556 7788889999999999998754 377899999999998877777777777765 366677
Q ss_pred HHHhcCChHHHHHHHHH
Q 004743 431 VFCNNGDVDKACSVEEH 447 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~ 447 (732)
+|...|+++++.+++.+
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 78899999999988754
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.70 E-value=98 Score=19.87 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=13.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 004743 465 RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.++.+.|+.++|...|+++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3445566666666666666554
No 327
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=22.65 E-value=7.7e+02 Score=24.52 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=84.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHH
Q 004743 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---VYPEEP 458 (732)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g---v~pd~~ 458 (732)
.+.|.+..--.|-.++...|+..+|...|.+-..-=..-|....-.+-.+....++...|...++.+.+.. -.||..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 35688877788999999999999999999986644344556666667777888899999999999887753 345533
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
-.+-+.|...|+..+|..-|+...+. .|.|.
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ 194 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISY--YPGPQ 194 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHH
Confidence 34557788899999999999999888 77775
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.51 E-value=7.3e+02 Score=30.19 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=18.1
Q ss_pred hhhccceeeeeeccC-CCCceeEehh
Q 004743 10 LQQQNQLFSLTLCKS-SPPTLTVFNF 34 (732)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 34 (732)
+.|||-|||.-...- .|..|-++++
T Consensus 74 ~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 74 LNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ccCceEEEEEeecCCCCceEEEEecc
Confidence 345677888887777 5558888883
No 329
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.43 E-value=1.5e+03 Score=27.35 Aligned_cols=112 Identities=9% Similarity=-0.037 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
.|.+- -|..+...|+..+|.++-.+.+ .||-..|--=+.+++..+++++-+++-+.++ ...-|-+.+.+
T Consensus 685 lSl~d-Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 685 LSLHD-TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred CcHHH-HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 35555 5677888899999998887776 5899999999999999999999887766544 25678889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
|.+.|+.++|.+.+.... +.. -...+|.+.|++.+|.++--+=
T Consensus 754 c~~~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHhcccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHHHHHHh
Confidence 999999999999987632 222 5788999999999998875543
No 330
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.09 E-value=8.9e+02 Score=25.31 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=52.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~ty~~lI~~~~~~g 436 (732)
++....+.|..+.-..+++..... ++..--..++.+++...+.+...++++.....+ +.+.. . ..++.++...+
T Consensus 175 v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~ 249 (324)
T PF11838_consen 175 VYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSN 249 (324)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CS
T ss_pred HHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCC
Confidence 556666777755544454444433 467788999999999999999999999888764 54433 3 44555665455
Q ss_pred Ch--HHHHHHHHH
Q 004743 437 DV--DKACSVEEH 447 (732)
Q Consensus 437 ~~--~~A~~l~~~ 447 (732)
.. +.+++.+.+
T Consensus 250 ~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 250 PVGRDLAWEFFKE 262 (324)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 44 777776643
No 331
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=20.93 E-value=4.3e+02 Score=23.34 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
|..|+.-|-..|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666655554
No 332
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.79 E-value=1.4e+03 Score=26.97 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=55.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
...|+..+......|+. ...|++..|..++++....|- ...+. +..++|. | .++..
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~--~~It~-----------------~~V~~~L--g-~~~~~ 252 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGS--GQLQE-----------------AAVRQML--G-SVDRS 252 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcC--CCcCH-----------------HHHHHHH--c-CCCHH
Confidence 44577767666666665 335777777777655443221 11111 1111222 1 23444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHhch
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~~~ 505 (732)
....|++++.. |+...++.++++|... |.++. ....+..+++..
T Consensus 253 ~i~~LldaL~~-~d~~~al~~l~~l~~~--G~~~~~il~~l~~~~~~~ 297 (618)
T PRK14951 253 HVFRLIDALAQ-GDGRTVVETADELRLN--GLSAASTLEEMAAVLQRM 297 (618)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 55556666554 6788888888888877 66665 444455555543
No 333
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=20.49 E-value=1.1e+02 Score=20.65 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~ 407 (732)
-|...|+.|-..|...|+.++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36677888888888888887775
No 334
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=20.31 E-value=1.7e+02 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=32.3
Q ss_pred ccccc-ceecccCCCCChhhHHHHHHHHHhhCCCCCccEEEecccc
Q 004743 608 VVDAA-NVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRR 652 (732)
Q Consensus 608 v~d~~-nv~~~~~~~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~ 652 (732)
|+||+ |+++.+-|=+.|+++..+++++-. . .-..|++|-+..+
T Consensus 200 ~~~~~~~iaa~gvNC~~p~~~~a~i~~l~~-~-~~~~piivYPNSG 243 (300)
T COG2040 200 ILAGLPNIAALGVNCCHPDHIPAAIEELSK-L-LTGKPIIVYPNSG 243 (300)
T ss_pred HHhcCcchhheeeccCChhhhHHHHHHHHh-c-CCCCceEEcCCcc
Confidence 56677 888888888899999999999943 2 3445888877643
No 335
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.21 E-value=1.7e+03 Score=27.49 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 369 QRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 369 ~~A~~lf~~M-~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
+...+++.++ ...|+..+...+..+++.. .|++..++.+++++..
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia 227 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLA 227 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Confidence 3334444443 3457777777766665544 5788888888887663
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=20.16 E-value=6.2e+02 Score=22.45 Aligned_cols=52 Identities=29% Similarity=0.391 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+..+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34567889999999998877 4899999988765 4788888888888888776
Done!